RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16306
(302 letters)
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 136 bits (344), Expect = 2e-38
Identities = 71/145 (48%), Positives = 101/145 (69%), Gaps = 3/145 (2%)
Query: 4 EIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAA 63
++ +++ +P P L FG FTDHML +E+N+ GW PR+ P + LTLHPA+
Sbjct: 7 DLQLEMTQKPHKKPGPG-EPLVFGKTFTDHMLMVEWND--KGWGQPRIQPFQNLTLHPAS 63
Query: 64 KVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLI 123
LHYS++LFEGMKA++G D +R+FRP +NMDRM RSA+R LP FD E+++C+ RLI
Sbjct: 64 SSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLI 123
Query: 124 QIDQEWVPHTTAASLYIRPTLIGTD 148
++D++WVP SLY+RP LIG +
Sbjct: 124 EVDKDWVPDAAGTSLYVRPVLIGNE 148
Score = 77.3 bits (189), Expect = 1e-16
Identities = 43/80 (53%), Positives = 59/80 (73%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
LFEGMKA++G D +R+FRP +NMDRM RSA+R LP FD E+++C+ RLI++D++
Sbjct: 69 SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKD 128
Query: 283 WVPHTTAASLYIRPTLIGTD 302
WVP SLY+RP LIG +
Sbjct: 129 WVPDAAGTSLYVRPVLIGNE 148
Score = 76.9 bits (188), Expect = 2e-16
Identities = 42/80 (52%), Positives = 59/80 (73%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
LFEGMKA++G D +R+FRP +NMDRM +SA+R LP FD E+++C+ RLI++D++
Sbjct: 69 SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKD 128
Query: 206 WVPHTTAASLYIRPTLIGTD 225
WVP SLY+RP LIG +
Sbjct: 129 WVPDAAGTSLYVRPVLIGNE 148
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 67.3 bits (163), Expect = 2e-13
Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 105
W + + +H + LHY +FEG++ Y G + +FR +M R++ SA
Sbjct: 6 WFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPV-VFRHREHMQRLHDSA--- 61
Query: 106 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRM 165
+ + Q ++ L++ ++ + S YIRP + D+ G+ G + +
Sbjct: 62 ---KIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVII 118
Query: 166 FRPEMNM 172
Sbjct: 119 AAFPWGA 125
Score = 56.1 bits (134), Expect = 1e-09
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 200 IQIDQEWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALR 258
I + E V A + GT +FEG++ Y G + +FR +M R++ SA
Sbjct: 5 IWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPV-VFRHREHMQRLHDSA-- 61
Query: 259 AGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
+ + Q ++ L++ ++ + S YIRP + D
Sbjct: 62 ----KIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGD 101
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 46.1 bits (108), Expect = 2e-06
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 53 PLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA-LRAGLPQFD 111
+ + + + + ++E +K Y G MF ++DR+ SA +
Sbjct: 11 KDEEVKIDKEDRGYQFGDGVYEVVKVYNG-----EMFTVNEHIDRLYASAEKIRITIPYT 65
Query: 112 PEEMIQCLNRLIQIDQEWVPH 132
++ Q L+ L++ ++ H
Sbjct: 66 KDKFHQLLHELVEKNELNTGH 86
Score = 40.4 bits (93), Expect = 1e-04
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 205 EWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA-LRAGLP 262
+ V R G ++E +K Y G MF ++DR+ SA
Sbjct: 8 QIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNG-----EMFTVNEHIDRLYASAEKIRITI 62
Query: 263 QFDPEEMIQCLNRLIQIDQEWVPH 286
+ ++ Q L+ L++ ++ H
Sbjct: 63 PYTKDKFHQLLHELVEKNELNTGH 86
Score = 39.6 bits (91), Expect = 2e-04
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 128 EWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSA-LRAGLP 185
+ V R G ++E +K Y G MF ++DR+ SA
Sbjct: 8 QIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNG-----EMFTVNEHIDRLYASAEKIRITI 62
Query: 186 QFDPEEMIQCLNRLIQIDQEWVPH 209
+ ++ Q L+ L++ ++ H
Sbjct: 63 PYTKDKFHQLLHELVEKNELNTGH 86
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 40.8 bits (94), Expect = 9e-05
Identities = 8/72 (11%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 58 TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQ 117
+L + + + F + G ++ ++ R+ + R + ++ Q
Sbjct: 11 SLAVSDRATQFGDGCFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQ 65
Query: 118 CLNRLIQIDQEW 129
+ L Q
Sbjct: 66 EMKTLAAEQQNG 77
Score = 36.9 bits (84), Expect = 0.002
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 214 SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 273
++ R T G F + G ++ ++ R+ + R + ++ Q +
Sbjct: 13 AVSDRATQFGDGCFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEM 67
Query: 274 NRLIQIDQEW 283
L Q
Sbjct: 68 KTLAAEQQNG 77
Score = 36.2 bits (82), Expect = 0.003
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 137 SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCL 196
++ R T G F + G ++ ++ R+ + R + ++ Q +
Sbjct: 13 AVSDRATQFGDGCFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEM 67
Query: 197 NRLIQIDQEW 206
L Q
Sbjct: 68 KTLAAEQQNG 77
>d2dk8a1 a.4.5.85 (A:8-75) DNA-directed RNA polymerase III subunit
RPC6, RPO3F {Mouse (Mus musculus) [TaxId: 10090]}
Length = 68
Score = 24.7 bits (54), Expect = 4.1
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 175 MNQSALRAGLPQFDPEEMIQCLNRLIQIDQ 204
+ ++ +P + ++ +NRL+ + Q
Sbjct: 23 ITDQVIQNEMPHIEAQQRAVAINRLLSMGQ 52
Score = 24.3 bits (53), Expect = 5.8
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 98 MNRSALRAGLPQFDPEEMIQCLNRLIQIDQ 127
+ ++ +P + ++ +NRL+ + Q
Sbjct: 23 ITDQVIQNEMPHIEAQQRAVAINRLLSMGQ 52
Score = 24.3 bits (53), Expect = 5.8
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 252 MNRSALRAGLPQFDPEEMIQCLNRLIQIDQ 281
+ ++ +P + ++ +NRL+ + Q
Sbjct: 23 ITDQVIQNEMPHIEAQQRAVAINRLLSMGQ 52
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 26.1 bits (56), Expect = 6.0
Identities = 11/136 (8%), Positives = 29/136 (21%), Gaps = 5/136 (3%)
Query: 159 VDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 218
G + E+++ ++ + +
Sbjct: 138 TGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKAD 197
Query: 219 PTLIGTD----LFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 274
++ T E + + A AG D + I
Sbjct: 198 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDM-QYIDTKA 256
Query: 275 RLIQIDQEWVPHTTAA 290
++ ++ +P A
Sbjct: 257 EVMNAKKQVIPGLYGA 272
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/136 (8%), Positives = 29/136 (21%), Gaps = 5/136 (3%)
Query: 82 VDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141
G + E+++ ++ + +
Sbjct: 138 TGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKAD 197
Query: 142 PTLIGTD----LFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLN 197
++ T E + + A AG D + I
Sbjct: 198 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDM-QYIDTKA 256
Query: 198 RLIQIDQEWVPHTTAA 213
++ ++ +P A
Sbjct: 257 EVMNAKKQVIPGLYGA 272
>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase
{Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 259
Score = 25.9 bits (56), Expect = 6.4
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 164 RMFRPEMNMDRMNQSALRAGLPQFDPEEMIQC--LNRLIQIDQEWVPHTTAASLYIRPTL 221
R + + +A+ G+P + + + I P
Sbjct: 129 HCRRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVN-CIAPGG 187
Query: 222 IGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSAL-RAGLPQ 263
+ TD+F+ + G+ M + +++ N + L R G P
Sbjct: 188 VKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPA 230
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 26.1 bits (56), Expect = 6.6
Identities = 27/243 (11%), Positives = 61/243 (25%), Gaps = 14/243 (5%)
Query: 62 AAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNR 121
AAK +V L + G + + + + F + M +
Sbjct: 37 AAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ 96
Query: 122 LIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALR 181
+ +A + +L VD R + + + + +
Sbjct: 97 NDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRK 156
Query: 182 AGLPQFDPEEMIQCLNRLIQI-----------DQEWVPHTTAASLYIRPTLIGTDLFEGM 230
A Q + + +L+ + + A + T E +
Sbjct: 157 AAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMI 216
Query: 231 KAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN---RLIQIDQEWVPHT 287
YR + A G D + + +N ++ + + +
Sbjct: 217 AYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWVQAAINTTASVLDLQSKPIDGL 276
Query: 288 TAA 290
AA
Sbjct: 277 FAA 279
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.427
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,206,926
Number of extensions: 57380
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 26
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.7 bits)