Query psy16308
Match_columns 371
No_of_seqs 191 out of 526
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 18:00:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3733|consensus 100.0 1.9E-49 4E-54 395.7 15.3 215 1-217 333-547 (566)
2 PLN03223 Polycystin cation cha 100.0 1.2E-28 2.5E-33 270.5 19.4 192 5-199 1209-1445(1634)
3 KOG2301|consensus 100.0 6.4E-29 1.4E-33 280.9 13.4 224 4-239 1214-1458(1592)
4 PF08016 PKD_channel: Polycyst 99.9 8.7E-24 1.9E-28 212.6 16.4 171 4-180 237-425 (425)
5 KOG3599|consensus 99.9 6.1E-22 1.3E-26 214.0 17.8 189 5-199 494-702 (798)
6 KOG2302|consensus 99.7 5.6E-18 1.2E-22 182.3 10.0 172 7-185 1501-1692(1956)
7 PF00520 Ion_trans: Ion transp 99.7 1.5E-16 3.3E-21 137.6 9.5 158 4-173 26-200 (200)
8 TIGR00870 trp transient-recept 99.6 1.8E-15 3.8E-20 161.7 15.4 175 6-185 418-623 (743)
9 KOG2302|consensus 99.6 4.1E-14 8.8E-19 153.0 16.2 173 4-183 1187-1394(1956)
10 KOG2301|consensus 99.5 1.1E-13 2.4E-18 158.1 14.0 160 4-181 500-666 (1592)
11 KOG3609|consensus 98.9 1.6E-08 3.5E-13 109.5 13.6 176 6-183 413-617 (822)
12 KOG0510|consensus 98.7 9.9E-08 2.1E-12 103.3 11.4 143 42-185 620-765 (929)
13 KOG3676|consensus 98.6 5.1E-07 1.1E-11 97.7 15.4 161 11-185 478-655 (782)
14 KOG3614|consensus 98.0 1.3E-05 2.7E-10 90.9 8.3 174 4-183 856-1048(1381)
15 KOG3713|consensus 97.5 0.00063 1.4E-08 71.0 11.0 165 3-184 266-437 (477)
16 KOG3533|consensus 93.7 2.4 5.2E-05 50.0 16.2 116 69-185 2407-2577(2706)
17 PLN03192 Voltage-dependent pot 93.4 3.2 6.9E-05 46.2 16.6 12 222-233 354-365 (823)
18 KOG1545|consensus 92.9 0.24 5.1E-06 51.1 6.3 63 50-120 327-398 (507)
19 PRK10537 voltage-gated potassi 82.1 29 0.00063 35.9 13.2 91 56-164 114-209 (393)
20 PLN03223 Polycystin cation cha 79.7 16 0.00035 43.5 11.3 121 52-175 1301-1428(1634)
21 KOG4390|consensus 76.4 0.9 1.9E-05 47.4 0.3 113 55-183 295-415 (632)
22 KOG0501|consensus 73.1 1.4E+02 0.003 33.5 15.3 101 8-109 248-377 (971)
23 KOG2243|consensus 66.9 14 0.00031 44.3 6.8 128 55-186 4790-4931(5019)
24 KOG0498|consensus 52.2 3.7E+02 0.008 30.5 14.4 48 148-199 323-370 (727)
25 KOG4663|consensus 37.0 1.2E+02 0.0025 29.3 6.7 32 83-114 112-143 (210)
26 PF01235 Na_Ala_symp: Sodium:a 33.3 2.8E+02 0.0062 29.2 9.5 42 69-110 291-333 (416)
27 PF00864 P2X_receptor: ATP P2X 31.7 27 0.00058 36.2 1.7 14 349-362 172-185 (373)
28 COG1115 AlsT Na+/alanine sympo 30.7 2.9E+02 0.0063 29.6 9.0 61 68-128 334-395 (452)
29 PF13198 DUF4014: Protein of u 29.7 1.6E+02 0.0034 24.0 5.3 37 149-185 16-52 (72)
30 COG1480 Predicted membrane-ass 29.1 3.3E+02 0.0071 30.8 9.4 54 76-129 333-387 (700)
31 TIGR01404 FlhB_rel_III type II 27.9 6.6E+02 0.014 25.6 13.4 57 149-205 175-231 (342)
32 PF00520 Ion_trans: Ion transp 27.2 3.9E+02 0.0083 22.6 8.5 56 52-109 62-117 (200)
33 KOG1419|consensus 26.3 1.4E+02 0.0031 32.9 6.0 108 1-120 158-274 (654)
34 PF06027 DUF914: Eukaryotic pr 25.1 5.8E+02 0.012 26.0 9.8 15 16-30 167-181 (334)
35 TIGR00870 trp transient-recept 24.0 5.5E+02 0.012 28.2 10.1 24 156-179 585-608 (743)
36 PF01595 DUF21: Domain of unkn 22.2 5.3E+02 0.011 22.5 8.3 19 185-203 158-176 (183)
37 TIGR00927 2A1904 K+-dependent 21.8 2.2E+02 0.0048 33.5 6.6 129 9-167 931-1085(1096)
38 PRK06298 type III secretion sy 21.7 8.9E+02 0.019 24.9 13.4 57 149-205 177-233 (356)
39 PF08507 COPI_assoc: COPI asso 21.0 4.9E+02 0.011 22.6 7.4 64 43-107 37-109 (136)
No 1
>KOG3733|consensus
Probab=100.00 E-value=1.9e-49 Score=395.71 Aligned_cols=215 Identities=61% Similarity=1.148 Sum_probs=208.4
Q ss_pred CcccccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHh
Q psy16308 1 MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKA 80 (371)
Q Consensus 1 ~~dKl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~S 80 (371)
.+|+++|+|+|+++.+++|+++|+|+++++.+|.+...+ ||+|++++|++.+++|++++|||.|++.+++|+.||++|
T Consensus 333 ~~~rlefvn~wyi~ii~~dvl~i~gs~~k~~iE~K~l~~--yDvCSI~LGtstLLVW~GVIRYLgfF~~YNvlIlTl~~a 410 (566)
T KOG3733|consen 333 FDGRLEFVNGWYIMIIFSDVLTIIGSILKEQIEAKYLVS--YDVCSILLGTSTLLVWFGVIRYLGFFKTYNVLILTLKKA 410 (566)
T ss_pred cccceeEEeeeeEEeeehhHHHHHHHHHHHHHHHHhhhH--HHHHHHHhCcchhHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 478999999999999999999999999999999887765 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcccchhhHHHHHHHHHH
Q psy16308 81 FPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISL 160 (371)
Q Consensus 81 ip~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL 160 (371)
+|++++|++|+++||.||++|||++.||||.+|+++.+..+|||++++||+|++||.+|++.+..+|+++++|+||||.|
T Consensus 411 lPkVlRFc~ca~mIYlGy~FCGWIVLGPYHdKFrsLntvsECLFSLINGDDMFaTFA~mqqkS~lvWlFsqiYLYSFISL 490 (566)
T KOG3733|consen 411 LPKVLRFCCCAAMIYLGYCFCGWIVLGPYHDKFRSLNTVSECLFSLINGDDMFATFATMQQKSTLVWLFSQIYLYSFISL 490 (566)
T ss_pred hHHHHHHHHHHHHHHHHHhheeeEEecchHHhhhhHHHHHHHHHHhhCchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHhccCCCCCccccCccccc
Q psy16308 161 YIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETAS 217 (371)
Q Consensus 161 ~ifIILNmFIAII~daYeevK~~~~~g~~~~dl~~Fi~~~~~dp~sg~~~~~~~~~~ 217 (371)
++|++|++|||+|+|+|+++|+.+++|+++.||++|+.+|.++|.+|.|+.+++...
T Consensus 491 fIYmvLSLFIAlItdaYDTIK~~qq~GfpeTdLqafi~ec~d~~~sg~f~~es~~f~ 547 (566)
T KOG3733|consen 491 FIYMVLSLFIALITDAYDTIKAYQQDGFPETDLQAFITECADDPSSGKFRTESDDFV 547 (566)
T ss_pred HHHHHHHHHHHHHhchHHHHHHhhhCCCChhHHHHHHHHhccCCCccceeccCCCce
Confidence 999999999999999999999999999999999999999999999999999876543
No 2
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=270.50 Aligned_cols=192 Identities=17% Similarity=0.325 Sum_probs=158.1
Q ss_pred ccccccceeeeeccchhhhhhhHHHHHHh---h------------hccc-----------------C----------cch
Q psy16308 5 LEFLNLWYVMIIANDVLLILGSSIKEQIE---R------------KQFI-----------------G----------DQW 42 (371)
Q Consensus 5 l~F~n~WnIf~~I~D~l~IiGsiL~i~i~---~------------~~~~-----------------~----------~~~ 42 (371)
.+|.++||+++++.-++.++...+..... . +... + +.+
T Consensus 1209 aYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~ 1288 (1634)
T PLN03223 1209 AYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLSASANFTALRIPNELPEMNDMFLEMKNLVDYF 1288 (1634)
T ss_pred hHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhhhhcchhhhcccccccchhhHHHHHHHHHHHH
Confidence 45899999998888888877666532110 0 0000 0 012
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHH
Q psy16308 43 NLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSEC 122 (371)
Q Consensus 43 ~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~T 122 (371)
.++..++|+.+|++|+|+||+|+|+|++++|..||++|+|+++.|+++++++|++||++|+++||...+.|+|+..|+.|
T Consensus 1289 q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~ve~FSTf~sSL~T 1368 (1634)
T PLN03223 1289 QWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNASVHFSDMTDSINS 1368 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhcCHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCchh--hhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC-CChhHHHHHHHH
Q psy16308 123 LFALINGDDMF--ATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYING-FPKSDVIKFMGE 199 (371)
Q Consensus 123 LFsl~tGD~~~--dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~~g-~~~~dl~~Fi~~ 199 (371)
||+|++||..+ +.+..+.+.+ +++|++||++|+++++||+||||||||.|+|+++|++..++ ..+.|+-+|+..
T Consensus 1369 LFqMLLGDfdYF~eDLk~l~e~n---rVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d~seq~s~e~EIvDfm~~ 1445 (1634)
T PLN03223 1369 LFENLLGDITYFNEDLKNLTGLQ---FVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKANAAETVSVHTELFPMLRD 1445 (1634)
T ss_pred HHHHHHcCchHHHHHHHhhhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Confidence 99999999763 2233332223 48999999999999999999999999999999999986544 468888888876
No 3
>KOG2301|consensus
Probab=99.96 E-value=6.4e-29 Score=280.89 Aligned_cols=224 Identities=20% Similarity=0.282 Sum_probs=189.4
Q ss_pred cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308 4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK 83 (371)
Q Consensus 4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~ 83 (371)
+-+|.++||+||++..+++|++.++....+....+ .++..+..+++..|++|+++.+.++++|+.|+..|+|+
T Consensus 1214 ~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~~~~~-------~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~Sl~a 1286 (1592)
T KOG2301|consen 1214 RGYFTSAWNVFDFVVTILSIVGIVLSEAVEKYESS-------PTLLRFLRLFRVGRFLRLIPQAKTIRTLLLTLMMSLPA 1286 (1592)
T ss_pred hHhccccchheEeeeeeHhHHHHHHHHHHHhhccc-------hhhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhHH
Confidence 45688999999777777777777765555432222 35667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-------cccCCCCHHHHHHHHHHHHhCCchhhhhhcC-------CC--CC---c
Q psy16308 84 VARFLLCAVLIYAGFTFCGWLVLGP-------YHMKFRSLSTTSECLFALINGDDMFATFSIM-------PK--KS---A 144 (371)
Q Consensus 84 L~~Flvl~~lIffgFAilG~~lFG~-------~~~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l-------~~--~s---~ 144 (371)
+++++++.+++||+||++||.+||. .+.||+|+++|+.+||++.||++|.+.+.++ ++ .+ +
T Consensus 1287 l~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~~i~~~~NF~tf~~a~i~LFr~~Tge~W~~im~~~l~s~p~Cdp~~~~~~~d 1366 (1592)
T KOG2301|consen 1287 LFFIILLLFLLFFIYAIIGMQLFGYVKLGGINDHNNFRTFPNSMVVLFRCATGEGWNDIMDDCLNSKPFCDPDDGNNGTD 1366 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeccccCCCcccccchhheeeeeehhhhhhHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 9999999999999999999999995 4679999999999999999998776655432 21 11 3
Q ss_pred cc-chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHH-hccCCCCCccccCcccccCcHHH
Q psy16308 145 ML-WWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGE-IQEDETNHDFWSSIETASFSFRE 222 (371)
Q Consensus 145 ~~-~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~~g~~~~dl~~Fi~~-~~~dp~sg~~~~~~~~~~~s~~e 222 (371)
|+ +.+|.+||+||+++.+||++|||||||+|+|+.+.++.+++++++|+++|++. .++||+++++..- ..+.+
T Consensus 1367 CGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s~~Ls~~d~~~F~~vW~~fDpeatg~I~~-----~~~~~ 1441 (1592)
T KOG2301|consen 1367 CGNPTVAIIYFVSWILISSYIVVNLFVAVILENFSYATEDSSEGLSEDDFEKFYEAWDEFDPEATQEIPY-----SDLSA 1441 (1592)
T ss_pred cCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcccHHHHHHHHHhcChhhheeeeH-----hhHHH
Confidence 44 78999999999999999999999999999999999988889999999999999 8899988766543 24679
Q ss_pred HHHhhhhhhhHHhhhch
Q psy16308 223 QIHKMHKSIALATRADR 239 (371)
Q Consensus 223 ll~~~~~~l~~~~~~~~ 239 (371)
+++.++++|++++.-|+
T Consensus 1442 ~lr~L~ppL~~~k~~~~ 1458 (1592)
T KOG2301|consen 1442 FLRSLDPPLDLGKPNKR 1458 (1592)
T ss_pred HHHhcCCccccCCCCCc
Confidence 99999999999766555
No 4
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.91 E-value=8.7e-24 Score=212.57 Aligned_cols=171 Identities=23% Similarity=0.454 Sum_probs=142.2
Q ss_pred cccccccceeeeeccchhhhhhhHHHHH--------Hhh-----hcccCc-----chhHHHHHHHHHHHHHHHHHhhhhc
Q psy16308 4 RLEFLNLWYVMIIANDVLLILGSSIKEQ--------IER-----KQFIGD-----QWNLCSVFLGTGNLLVWFGVLRYLG 65 (371)
Q Consensus 4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~--------i~~-----~~~~~~-----~~~v~~illGi~~fl~wlrLLRyLr 65 (371)
+.+|.+.||+++++.-++.++...+... ++. ..+.+. ..+..+.++|+.+++.|+|++|+++
T Consensus 237 ~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~~~~~~l~a~~vfl~~lrll~~l~ 316 (425)
T PF08016_consen 237 RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWDQLYRYLLAFLVFLLWLRLLKLLR 316 (425)
T ss_pred hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 3458899999976666555544443321 110 012111 1235678999999999999999999
Q ss_pred cccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcc
Q psy16308 66 FFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAM 145 (371)
Q Consensus 66 f~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~ 145 (371)
++|++.++..|+++|.++++.|+++++++++|||++|+++||++.++|+|+..|+.|||+++.||..++.+. +.+
T Consensus 317 f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~~f~s~~~s~~tl~~~l~g~~~~~~~~---~~~-- 391 (425)
T PF08016_consen 317 FNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSEDFSSFSSSLVTLFRMLLGDFDYDELY---QAN-- 391 (425)
T ss_pred ecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCHHHHHHHHHHHhcCCCchhhhh---ccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999998877433 233
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16308 146 LWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI 180 (371)
Q Consensus 146 ~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeev 180 (371)
+++|++|+++|+++++++++|||+|||.|+|++|
T Consensus 392 -~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~V 425 (425)
T PF08016_consen 392 -PVLGPLFFFSFMFLVFFILLNLFIAIINDSYEEV 425 (425)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3899999999999999999999999999999975
No 5
>KOG3599|consensus
Probab=99.88 E-value=6.1e-22 Score=213.96 Aligned_cols=189 Identities=20% Similarity=0.320 Sum_probs=155.5
Q ss_pred ccccccceeeeeccchhhhhhhHHHHHHh---h-----------hcccC----cchh-HHHHHHHHHHHHHHHHHhhhhc
Q psy16308 5 LEFLNLWYVMIIANDVLLILGSSIKEQIE---R-----------KQFIG----DQWN-LCSVFLGTGNLLVWFGVLRYLG 65 (371)
Q Consensus 5 l~F~n~WnIf~~I~D~l~IiGsiL~i~i~---~-----------~~~~~----~~~~-v~~illGi~~fl~wlrLLRyLr 65 (371)
..+.+.||+++...+.++++...+.+.-. . ..+.+ .+|+ ..++++|+.+|+.|+|+.|+++
T Consensus 494 ~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~ 573 (798)
T KOG3599|consen 494 RYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNIAARNLLAFLVFLTTIKLWKVLR 573 (798)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56889999997777666665554433111 0 01221 1122 4668899999999999999999
Q ss_pred cccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcc
Q psy16308 66 FFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAM 145 (371)
Q Consensus 66 f~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~ 145 (371)
|+++++++..||.+|.|+|+.|+++++++|++||++|+.+||.+..+|+||.+|+.|+++.+.||.-+.+ +.+.|
T Consensus 574 f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~~f~~f~~s~~t~~~~~~G~~~~~~---i~~~~-- 648 (798)
T KOG3599|consen 574 FNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVSDFRTFVASIVTLLRYILGDFCPAE---IFHAN-- 648 (798)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCChHHHHHHHHHHHHHHhccCCccc---cccCC--
Confidence 9999999999999999999999999999999999999999999999999999999999999999766554 33334
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC-CChhHHHHHHHH
Q psy16308 146 LWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYING-FPKSDVIKFMGE 199 (371)
Q Consensus 146 ~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~~g-~~~~dl~~Fi~~ 199 (371)
.++|++|+.+|++++++|++|||.|||+|+|+++|+...++ .++-++.+++..
T Consensus 649 -r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~~~~~~~~~~~l~~~l~~ 702 (798)
T KOG3599|consen 649 -RILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKADLAKERSSEVELIDFLLY 702 (798)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHhhccccchhHHHHHHH
Confidence 38999999999999999999999999999999999977663 345566666664
No 6
>KOG2302|consensus
Probab=99.73 E-value=5.6e-18 Score=182.31 Aligned_cols=172 Identities=19% Similarity=0.306 Sum_probs=142.3
Q ss_pred ccccceeeeeccchhhhhhhHHHHH-Hh-hhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHHH
Q psy16308 7 FLNLWYVMIIANDVLLILGSSIKEQ-IE-RKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKV 84 (371)
Q Consensus 7 F~n~WnIf~~I~D~l~IiGsiL~i~-i~-~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L 84 (371)
|.|-||-+++-.++++|.|..+... +. ...+.| ..+.+...++..|+||+|+..-+|+.|+.|..+|+|++
T Consensus 1501 fkdrwnqldlaivlls~mgitleeie~naalpinp-------tiirimrvlriarvlkllkmatgmralldtvvqalpqv 1573 (1956)
T KOG2302|consen 1501 FKDRWNQLDLAIVLLSVMGITLEEIEINAALPINP-------TIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQV 1573 (1956)
T ss_pred HhhhhhhhhHHHHHHHHhcccHhheeecccCCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6799999988888888888777432 11 123333 22345567788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc-------------ccCCCCHHHHHHHHHHHHhCCch----hhhhhcCCCCC-ccc
Q psy16308 85 ARFLLCAVLIYAGFTFCGWLVLGPY-------------HMKFRSLSTTSECLFALINGDDM----FATFSIMPKKS-AML 146 (371)
Q Consensus 85 ~~Flvl~~lIffgFAilG~~lFG~~-------------~~nF~Tf~~S~~TLFsl~tGD~~----~dtf~~l~~~s-~~~ 146 (371)
.+..++++++||+||-+|.-+||.- +.-|++|+.+++|||+..|||+| .||.++++..+ +..
T Consensus 1574 gnlgllfmllffiyaalgvelfg~lec~e~npceglsrhatf~nfgmafltlfrvstgdnwngimkdtlrdc~~e~~cls 1653 (1956)
T KOG2302|consen 1574 GNLGLLFMLLFFIYAALGVELFGKLECNEENPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTLRDCTHEESCLS 1653 (1956)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccccCCCCCccccccccchhhhchHhhhheeeccCCcccchhhhhHhhcccchhhhh
Confidence 9999999999999999999999963 45699999999999999999974 46666775443 345
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy16308 147 WWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYI 185 (371)
Q Consensus 147 ~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~ 185 (371)
.+++++||+||++...|+++|+.|||+|...++..++.+
T Consensus 1654 ~~~sp~yfvsfvltaqfvlvnvvvavlmkhleesnkea~ 1692 (1956)
T KOG2302|consen 1654 QFVSPLYFVSFVLTAQFVLVNVVVAVLMKHLEESNKEAQ 1692 (1956)
T ss_pred hhccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhchhhh
Confidence 689999999999999999999999999988887766543
No 7
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.68 E-value=1.5e-16 Score=137.61 Aligned_cols=158 Identities=22% Similarity=0.352 Sum_probs=124.9
Q ss_pred cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308 4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK 83 (371)
Q Consensus 4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~ 83 (371)
+..+.++||++++++.+..++..++......+ . ...+++..+++++|++|+++..+.++.++.++.++.++
T Consensus 26 ~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T PF00520_consen 26 RRYFRSWWNWFDFISVIPSIVSVILRSYGSAS------A---QSLLRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPD 96 (200)
T ss_dssp GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--H------H---CHCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred HHHhcChhhccccccccccccccccccccccc------c---cceEEEEEeecccccccccccccccccccccccccccc
Confidence 56688999999544444443333322111000 0 23456778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc-----------------cCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCccc
Q psy16308 84 VARFLLCAVLIYAGFTFCGWLVLGPYH-----------------MKFRSLSTTSECLFALINGDDMFATFSIMPKKSAML 146 (371)
Q Consensus 84 L~~Flvl~~lIffgFAilG~~lFG~~~-----------------~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~~ 146 (371)
+.+++++++.+.++||++|+.+||+.. ++|.++..|+.++|++++|+++.+...+.....
T Consensus 97 l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~--- 173 (200)
T PF00520_consen 97 LFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSAR--- 173 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTT---
T ss_pred ccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccCCcccccccccccc---
Confidence 999999999999999999999999753 469999999999999999988776654321111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16308 147 WWYLRIYLYSFISLYIYVILSLFISVI 173 (371)
Q Consensus 147 ~vlg~iYfvSFIlL~ifIILNmFIAII 173 (371)
...+.+|+++|++++.++++|++||+|
T Consensus 174 ~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 174 SWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 268999999999999999999999986
No 8
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.65 E-value=1.8e-15 Score=161.68 Aligned_cols=175 Identities=13% Similarity=0.172 Sum_probs=137.1
Q ss_pred cccccceeeeeccchhhhhhhHHHHHHh---hhc-c---c---C-cchhHHHHHHHHHHHHHHHHHhhhhccccchHHHH
Q psy16308 6 EFLNLWYVMIIANDVLLILGSSIKEQIE---RKQ-F---I---G-DQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVI 74 (371)
Q Consensus 6 ~F~n~WnIf~~I~D~l~IiGsiL~i~i~---~~~-~---~---~-~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi 74 (371)
++.+.||+++++...+.+++.++....- ... + . . +...+...+++++.++.|+|++.|++.++.+..+.
T Consensus 418 y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~l~~~rll~~~~~~~~lGp~~ 497 (743)
T TIGR00870 418 YIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEALFAFALVLSWLNLLYIFRGNQHLGPLQ 497 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHhhchhcCchH
Confidence 4789999998766555554433322100 000 0 0 0 00123456889999999999999999999999999
Q ss_pred HHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhcCcc-------------------cCCCCHHHHHHHHHHHHhCCchhh
Q psy16308 75 LTLKKAFP-KVARFLLCAVLIYAGFTFCGWLVLGPYH-------------------MKFRSLSTTSECLFALINGDDMFA 134 (371)
Q Consensus 75 ~TL~~Sip-~L~~Flvl~~lIffgFAilG~~lFG~~~-------------------~nF~Tf~~S~~TLFsl~tGD~~~d 134 (371)
.++.+.+. ++++|+++++++++||++..+.+|+++. ..|+++..|+.+||.++.|...+.
T Consensus 498 i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~lf~~~~G~~~~~ 577 (743)
T TIGR00870 498 IMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGNAYSTLFETSQELFWAIIGLGDLL 577 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccCHHHHHHHHHHHHcCCcccc
Confidence 99999999 9999999999999999999999998532 469999999999999999975442
Q ss_pred hhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy16308 135 TFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYI 185 (371)
Q Consensus 135 tf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~ 185 (371)
. .+ .....++|+++|++|++++..+++||+||++.++|++++++.+
T Consensus 578 ~---~~--~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~ 623 (743)
T TIGR00870 578 A---NE--HKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDAD 623 (743)
T ss_pred c---cc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH
Confidence 1 11 1122489999999999999999999999999999999998544
No 9
>KOG2302|consensus
Probab=99.57 E-value=4.1e-14 Score=153.05 Aligned_cols=173 Identities=18% Similarity=0.285 Sum_probs=133.9
Q ss_pred cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308 4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK 83 (371)
Q Consensus 4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~ 83 (371)
..+|.+.||++ |.++++-+++++......- ....+..+ +....+++.+|.||.+++.+++..++-||..|+|.
T Consensus 1187 ~aYl~ssWN~L----Dgflv~vsviDilvs~asa--~g~kILgV-lrvLRlLRtlRpLRviSra~glklVveTL~sSLkp 1259 (1956)
T KOG2302|consen 1187 QAYLRSSWNVL----DGFLVAVSVIDILVSQASA--GGAKILGV-LRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKP 1259 (1956)
T ss_pred HHHHHHHHHhh----hHHHHHHHHHHHHHHHhhh--hhHHHHHH-HHHHHHHHHhhHHHHHhhcccHHHHHHHHHhcccc
Confidence 45688999999 6666666777665532221 11333332 24557888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----------------------------cccCCCCHHHHHHHHHHHHhCCchhhh
Q psy16308 84 VARFLLCAVLIYAGFTFCGWLVLGP----------------------------YHMKFRSLSTTSECLFALINGDDMFAT 135 (371)
Q Consensus 84 L~~Flvl~~lIffgFAilG~~lFG~----------------------------~~~nF~Tf~~S~~TLFsl~tGD~~~dt 135 (371)
+.++.+++.-.|++|+++|..+|-. +..||-|+++++++||-+.+-|+|-+.
T Consensus 1260 IgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~I 1339 (1956)
T KOG2302|consen 1260 IGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNI 1339 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhh
Confidence 9999999999999999999999971 135899999999999999999987765
Q ss_pred hhc-CCCCC----cc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16308 136 FSI-MPKKS----AM--LWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQY 183 (371)
Q Consensus 136 f~~-l~~~s----~~--~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~ 183 (371)
+.+ ++... +. ...+-.+||+||.+++.|.++|||+.++.++|..-.+.
T Consensus 1340 myDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqh 1394 (1956)
T KOG2302|consen 1340 MYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQH 1394 (1956)
T ss_pred hccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 22111 10 01355799999999999999999999999999876553
No 10
>KOG2301|consensus
Probab=99.51 E-value=1.1e-13 Score=158.15 Aligned_cols=160 Identities=15% Similarity=0.203 Sum_probs=128.3
Q ss_pred cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308 4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK 83 (371)
Q Consensus 4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~ 83 (371)
+.+|..+||+||.+..++.++ ... ..+ ..-+++.+.++.+|+.|+.++.|.++.|+..+..|..+
T Consensus 500 ~~yF~~~~n~fD~~iv~l~~~----~~~-----~~~------~~g~svLr~frllRIfkl~k~wp~l~~lv~~i~ns~~~ 564 (1592)
T KOG2301|consen 500 RNYFRRGWNIFDLIIVLLSLL----ELL-----LKN------VYGLSVLRSFRLLRIFKLIKSWPTLNDLVKSIFNSGKA 564 (1592)
T ss_pred HHHHhhhcchheEEEEehhhH----Hhc-----ccc------hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHH
Confidence 567999999997655553222 111 111 12345566788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc--c-----CCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcccchhhHHHHHH
Q psy16308 84 VARFLLCAVLIYAGFTFCGWLVLGPYH--M-----KFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYS 156 (371)
Q Consensus 84 L~~Flvl~~lIffgFAilG~~lFG~~~--~-----nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~~~vlg~iYfvS 156 (371)
+++..+.++++.++||.+||.+||..- . +|.||..|++++|+ ++|.+|.+++.++.+.. ...+..+||+.
T Consensus 565 l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~~~~~~~~~~fp~sfl~vFq-lt~e~W~evm~~~~~~~--~~~~~~i~Fi~ 641 (1592)
T KOG2301|consen 565 LGNLVLFLFIFIFIFAAIGMQLFGGVYNLHCDIHWHFTDFPHSFLSVFQ-ITCEEWTDVMWDCMEAA--GQPLCAIYFIA 641 (1592)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhCcccCCCCCCccchhhCHHHHHHHHH-HcCCchHHHHHHHHHHh--ccchhhhHHHH
Confidence 999999999999999999999999642 2 68899999999999 77777777765543322 23677899999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q psy16308 157 FISLYIYVILSLFISVIMDAYETIK 181 (371)
Q Consensus 157 FIlL~ifIILNmFIAII~daYeevK 181 (371)
+.++..+++||+|+|++.|+++...
T Consensus 642 ~~l~gn~vvLnlFlAl~~~n~~~~e 666 (1592)
T KOG2301|consen 642 YFLFGNLVVLNLFLALILDNFESDE 666 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhh
Confidence 9999999999999999999998766
No 11
>KOG3609|consensus
Probab=98.89 E-value=1.6e-08 Score=109.49 Aligned_cols=176 Identities=16% Similarity=0.257 Sum_probs=136.6
Q ss_pred cccccceeeeeccchhhhhhhHHHHHHh---hhcc----cCcchh------HHHHHHHHHHHHHHHHHhhhhccccchHH
Q psy16308 6 EFLNLWYVMIIANDVLLILGSSIKEQIE---RKQF----IGDQWN------LCSVFLGTGNLLVWFGVLRYLGFFKTYNV 72 (371)
Q Consensus 6 ~F~n~WnIf~~I~D~l~IiGsiL~i~i~---~~~~----~~~~~~------v~~illGi~~fl~wlrLLRyLrf~~~i~i 72 (371)
++.+.||++|++...+-++..+++...- ++.- .-..|+ +.+.+.+++..|+.+|++-++.-++.+.=
T Consensus 413 y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfAiA~V~S~lrl~~i~t~n~~lGP 492 (822)
T KOG3609|consen 413 YLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFAIANVLSFLKLFYIFTMNPSLGP 492 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3568999999888888887777655321 1111 112222 45688899999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----c-----------CCCCHHHHHHHHHHHHhCCc-hhhhh
Q psy16308 73 VILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYH----M-----------KFRSLSTTSECLFALINGDD-MFATF 136 (371)
Q Consensus 73 Li~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~----~-----------nF~Tf~~S~~TLFsl~tGD~-~~dtf 136 (371)
|.-.|.+.+.+++.|++++.+++++|++==..++.++. + .|+|+..|+.|||=.+.|=. ..++
T Consensus 493 lqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~~~fsti~eS~~tLFWsiFglv~~~~~- 571 (822)
T KOG3609|consen 493 LQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTTDSFSTIGESSKTLFWSIFGLVVLGSV- 571 (822)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccccccccccHHHHHHHHHHHHHhcccccce-
Confidence 99999999999999999999999999985555665542 2 49999999999999998722 1111
Q ss_pred hcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16308 137 SIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQY 183 (371)
Q Consensus 137 ~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~ 183 (371)
.+........++|.+.|.+|.++++.++|||.||+|.++|+++..+
T Consensus 572 -~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ 617 (822)
T KOG3609|consen 572 -VLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDD 617 (822)
T ss_pred -ecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhc
Confidence 1222222334789999999999999999999999999999999773
No 12
>KOG0510|consensus
Probab=98.69 E-value=9.9e-08 Score=103.30 Aligned_cols=143 Identities=15% Similarity=0.259 Sum_probs=121.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHH
Q psy16308 42 WNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSE 121 (371)
Q Consensus 42 ~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~ 121 (371)
.....++-++.+++.|++++=+++-+|...+.+.-+..-...++++..++.++.++|++.-+++|+... .|++..-|..
T Consensus 620 ~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk~f~vfs~lliaF~lsFYVll~~~~-eFs~p~ms~l 698 (929)
T KOG0510|consen 620 AHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLKSFMVFSILLIAFGLSFYVLLNKSS-EFSNPFMSKL 698 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCC-CcCCCcchhh
Confidence 344566778899999999999999999998888888889999999999999999999999999999775 6999999999
Q ss_pred HHHHHHhCCchhhh--h-hcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy16308 122 CLFALINGDDMFAT--F-SIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYI 185 (371)
Q Consensus 122 TLFsl~tGD~~~dt--f-~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~ 185 (371)
.-|+||.|+..+.- + .+-...+...++++.+-|++|++++..+++|+.|++-.+--+.+|+.-+
T Consensus 699 ~t~~MMiGe~dft~~~~~~~~~~~~l~~~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vqk~A~ 765 (929)
T KOG0510|consen 699 ETFVMMIGENDFTKVMFTEEFKRNSLAHPVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQKHAE 765 (929)
T ss_pred hhHHHhhcccccccccccchhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 99999999876641 1 1112233445689999999999999999999999998888888887544
No 13
>KOG3676|consensus
Probab=98.65 E-value=5.1e-07 Score=97.67 Aligned_cols=161 Identities=19% Similarity=0.278 Sum_probs=120.2
Q ss_pred ceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH-hhHHHHHHHH
Q psy16308 11 WYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKK-AFPKVARFLL 89 (371)
Q Consensus 11 WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~-Sip~L~~Flv 89 (371)
++++.++..++++++.++.+.. ......++.++..+.|..+|-|-|-++.+...+.-+.+ -+.++++|++
T Consensus 478 ~~v~~~~~~~l~l~~~~~~i~~---------~~~~~~~lvfAl~lgW~~~Lyf~Rgfq~~Gpf~~MIykmI~~DL~RF~~ 548 (782)
T KOG3676|consen 478 FHVLGFLQAVLVLVSPVLRLGA---------IKWELALLVFALVLGWKNLLYFTRGFQLTGPFVIMIYKMIFGDLFRFLL 548 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence 4444455555555544444322 12234556778889999999999988877665555444 3578999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcc----------------cCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcccchhhHHH
Q psy16308 90 CAVLIYAGFTFCGWLVLGPYH----------------MKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIY 153 (371)
Q Consensus 90 l~~lIffgFAilG~~lFG~~~----------------~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~~~vlg~iY 153 (371)
+-+++.+||++.-+.+|-+.. .-+.++..++++||....|...++..+. ... ++++.+-
T Consensus 549 IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~---~~~--~~~~kil 623 (782)
T KOG3676|consen 549 IYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACEN---TDY--PVLFKIL 623 (782)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhccc---ccc--hHHHHHH
Confidence 999999999999999997531 1266789999999999999776654222 222 4789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy16308 154 LYSFISLYIYVILSLFISVIMDAYETIKQYYI 185 (371)
Q Consensus 154 fvSFIlL~ifIILNmFIAII~daYeevK~~~~ 185 (371)
|+.|++++..+++||.||..-++|++|-++.+
T Consensus 624 fv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~ 655 (782)
T KOG3676|consen 624 FVAYMILVTILLLNMLIAMMGNTYETVAQESE 655 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHH
Confidence 99999999999999999999999999988663
No 14
>KOG3614|consensus
Probab=98.02 E-value=1.3e-05 Score=90.88 Aligned_cols=174 Identities=14% Similarity=0.236 Sum_probs=130.0
Q ss_pred cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308 4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK 83 (371)
Q Consensus 4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~ 83 (371)
|..|.+.||+.+.++-++-++|..+...-. ..+..-++++.+-.++-.+|++-|+.-++.+.=-+.-+++-+++
T Consensus 856 ~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~------~~~~~GRvIl~~d~i~~t~rLl~~f~V~~~lGPyI~mv~kMm~d 929 (1381)
T KOG3614|consen 856 RVYFADFWNLIDLLAILLFLVGPVLRLLPI------DSIYSGRVILCFDFILFTLRLLHYFTVSKQLGPYIVMVKKMMKD 929 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeEecCc------cceecceeeeeehHHHHHHHHhhheeeccccCchhHHHHHHHHH
Confidence 456889999998888777788877754321 12333466667777888899999999999999888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC-HHHHHHHHHHHHhCCchhhhhhcCC---------------CC---Cc
Q psy16308 84 VARFLLCAVLIYAGFTFCGWLVLGPYHMKFRS-LSTTSECLFALINGDDMFATFSIMP---------------KK---SA 144 (371)
Q Consensus 84 L~~Flvl~~lIffgFAilG~~lFG~~~~nF~T-f~~S~~TLFsl~tGD~~~dtf~~l~---------------~~---s~ 144 (371)
++.|++++++.+++|++.=-.+--++....-. +-+.+.--+-|+.|..-.+.++.+. .. .+
T Consensus 930 mf~flfllaV~LlsfGVarQaIl~P~e~~~w~l~R~i~y~PYlmifGeV~a~eID~~~~e~~~~~~p~~~~~s~~~~~c~ 1009 (1381)
T KOG3614|consen 930 MFFFLFLLAVVLLSFGVARQAILRPDEPRHWWLFRNIFYWPYLMLFGEVPADEIDTCTCEKSFCGEPLRYESSPGNPSCP 1009 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHhccccHhhhhhhcccccccCCCcccCCCCCCCCCC
Confidence 99999999999999999887777666544333 3334444555777754333332221 11 11
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16308 145 MLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQY 183 (371)
Q Consensus 145 ~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~ 183 (371)
.+.|+.++-.+.|+++...+++|+.||+-...|..+++.
T Consensus 1010 pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~ 1048 (1381)
T KOG3614|consen 1010 PGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQEN 1048 (1381)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 245899999999999999999999999999999998873
No 15
>KOG3713|consensus
Probab=97.53 E-value=0.00063 Score=70.99 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=101.8
Q ss_pred ccccc-cccceeeeeccchhhhhhhHHHHHHhhhcc-cCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHh
Q psy16308 3 GRLEF-LNLWYVMIIANDVLLILGSSIKEQIERKQF-IGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKA 80 (371)
Q Consensus 3 dKl~F-~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~-~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~S 80 (371)
+|++| .++-||+ |++.|.--.+...+..... +....+.....+.+.++++.+|++|+-|++.+++.|..||++|
T Consensus 266 ~k~~F~k~pLNII----DllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S 341 (477)
T KOG3713|consen 266 NKLEFFKSPLNII----DLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRS 341 (477)
T ss_pred hHHHHHhCcchHH----HHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 57776 5888888 6666653333333221111 0112333334556778889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccCCCCHHHHHHH-HHHHHh---CCchhhhhhcCCCCCcccchhhHHHHH
Q psy16308 81 FPKVARFLLCAVLIYAGFTFCGWLVLGPY-HMKFRSLSTTSEC-LFALIN---GDDMFATFSIMPKKSAMLWWYLRIYLY 155 (371)
Q Consensus 81 ip~L~~Flvl~~lIffgFAilG~~lFG~~-~~nF~Tf~~S~~T-LFsl~t---GD~~~dtf~~l~~~s~~~~vlg~iYfv 155 (371)
...+...++.+.+-..+||-+.+.+=-+. ..+|.|++.+.-= ..+|.| ||. + +.. +.|.+--
T Consensus 342 ~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm-~-------P~T----~~Gklva- 408 (477)
T KOG3713|consen 342 YRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDM-V-------PVT----VLGKLVA- 408 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCc-c-------ccc----cchHHHH-
Confidence 99998877777666666766655443222 2369988877421 122222 332 2 222 3333322
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16308 156 SFISLYIYVILSLFISVIMDAYETIKQYY 184 (371)
Q Consensus 156 SFIlL~ifIILNmFIAII~daYeevK~~~ 184 (371)
+=-+++-.+++-|=|.||.++|...-...
T Consensus 409 s~cil~GVLvlAlPItiIv~nF~~~y~~~ 437 (477)
T KOG3713|consen 409 SLCILCGVLVLALPITIIVNNFSMYYSEL 437 (477)
T ss_pred HHHHHHhHHHhhcchHhHhhhHHHHHHHH
Confidence 22233445567788999999988766543
No 16
>KOG3533|consensus
Probab=93.68 E-value=2.4 Score=49.99 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=72.7
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--------------------------------------
Q psy16308 69 TYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYH-------------------------------------- 110 (371)
Q Consensus 69 ~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~-------------------------------------- 110 (371)
.+.-++.+.-+--..+.--+++.+++.+.|+++|++.|-+.-
T Consensus 2407 TL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~tc~~enC~~~ 2486 (2706)
T KOG3533|consen 2407 TLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSETCPSENCPGL 2486 (2706)
T ss_pred HHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCccccCCCCCCCCC
Confidence 344444445555556667788999999999999999997520
Q ss_pred --------cCCCCHHHHHHHHHHHH---------hCCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16308 111 --------MKFRSLSTTSECLFALI---------NGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVI 173 (371)
Q Consensus 111 --------~nF~Tf~~S~~TLFsl~---------tGD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII 173 (371)
+.=..--+|..||..++ +|.++-|..+.-....+. ++.-.+|=..|.++.+.|+||+.-+||
T Consensus 2487 ~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~l-F~aRV~YDllFffivIiIVLNLIFGVI 2565 (2706)
T KOG3533|consen 2487 QPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDL-FIARVAYDLLFFFIVIIIVLNLIFGVI 2565 (2706)
T ss_pred CCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccch-hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01112233444443322 144444443322211111 244557778888888999999999999
Q ss_pred HhHHHHHHHHHh
Q psy16308 174 MDAYETIKQYYI 185 (371)
Q Consensus 174 ~daYeevK~~~~ 185 (371)
.|+|...+.++.
T Consensus 2566 IDTFaDLRsEKq 2577 (2706)
T KOG3533|consen 2566 IDTFADLRSEKQ 2577 (2706)
T ss_pred hhhHHHHHhhhh
Confidence 999999987544
No 17
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=93.37 E-value=3.2 Score=46.19 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=6.8
Q ss_pred HHHHhhhhhhhH
Q psy16308 222 EQIHKMHKSIAL 233 (371)
Q Consensus 222 ell~~~~~~l~~ 233 (371)
++++.+.+.|.-
T Consensus 354 ~~l~~Lp~~Lr~ 365 (823)
T PLN03192 354 QLIDQLPKSICK 365 (823)
T ss_pred HHHHHcCHHHHH
Confidence 566666555543
No 18
>KOG1545|consensus
Probab=92.86 E-value=0.24 Score=51.09 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------ccCCCCHHHHH
Q psy16308 50 GTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPY---------HMKFRSLSTTS 120 (371)
Q Consensus 50 Gi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~---------~~nF~Tf~~S~ 120 (371)
.+..+.+.+|++|+-|+.+++.+|-.||+.|+..+.-. || |-++|.++|..- ...|+++..|+
T Consensus 327 RViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLL------IF--FlfIgviLFsSavYFAEade~~S~F~SIPdaF 398 (507)
T KOG1545|consen 327 RVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLL------IF--FLFIGVILFSSAVYFAEADEPESHFSSIPDAF 398 (507)
T ss_pred HHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHH------HH--HHHHHHHHHhceeeeeecCCCccCCCcCcccc
Confidence 34445555666667788899999999999999986421 12 336788888742 24688888775
No 19
>PRK10537 voltage-gated potassium channel; Provisional
Probab=82.12 E-value=29 Score=35.90 Aligned_cols=91 Identities=22% Similarity=0.197 Sum_probs=49.0
Q ss_pred HHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCCCHHHHHHHHHHHHh----CC
Q psy16308 56 VWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGP-YHMKFRSLSTTSECLFALIN----GD 130 (371)
Q Consensus 56 ~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~-~~~nF~Tf~~S~~TLFsl~t----GD 130 (371)
+.++++.++.+.+.+.....+.. .-+.++.+...+.|+.+|...+++ ....+.++..|+---+..++ ||
T Consensus 114 ~~~~~~~l~~~~~~~~~~~~~~~------~l~~~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGd 187 (393)
T PRK10537 114 CIVLLVALLIYRRDFDRSSLAAG------TLFAVISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGD 187 (393)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCC
Confidence 33445555555555444433332 233445555667888999888875 33456777777762222222 23
Q ss_pred chhhhhhcCCCCCcccchhhHHHHHHHHHHHHHH
Q psy16308 131 DMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYV 164 (371)
Q Consensus 131 ~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifI 164 (371)
. .+.+ ..|+++..+.+++.+.+
T Consensus 188 i--------~p~t----~~grl~~i~~ii~Gi~v 209 (393)
T PRK10537 188 I--------VPVS----ESARLFTISVIILGITV 209 (393)
T ss_pred C--------CCCC----HHHHHHHHHHHHHHHHH
Confidence 2 1112 45777777777655444
No 20
>PLN03223 Polycystin cation channel protein; Provisional
Probab=79.71 E-value=16 Score=43.54 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhhccccch-HHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHhc--CcccCCCCHHHHHHHHHHHH
Q psy16308 52 GNLLVWFGVLRYLGFFKTY-NVVILTLKKAFPKVARFLLCAVLI-YAGFTFCGWLVLG--PYHMKFRSLSTTSECLFALI 127 (371)
Q Consensus 52 ~~fl~wlrLLRyLrf~~~i-~iLi~TL~~Sip~L~~Flvl~~lI-ffgFAilG~~lFG--~~~~nF~Tf~~S~~TLFsl~ 127 (371)
.+.+.++|+||+-+....+ +.|..++..-+.=++.|+++++.+ ++|+-++|..+-+ ....-+.|+...+.--|...
T Consensus 1301 LsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~ve~FSTf~sSL~TLFqMLLGDfdYF 1380 (1634)
T PLN03223 1301 LLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNASVHFSDMTDSINSLFENLLGDITYF 1380 (1634)
T ss_pred HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhcCHHHHHHHHHHHHHcCchHH
Confidence 3455677777777665554 445555555444444444443333 4788888876542 22222344443333332221
Q ss_pred hCCchhhhhhcCCC-CCcccchhhHHHHHHHHHH--HHHHHHHHHHHHHHh
Q psy16308 128 NGDDMFATFSIMPK-KSAMLWWYLRIYLYSFISL--YIYVILSLFISVIMD 175 (371)
Q Consensus 128 tGD~~~dtf~~l~~-~s~~~~vlg~iYfvSFIlL--~ifIILNmFIAII~d 175 (371)
..| + ....+... -++ .++++.+.++.||++ ++-||.+-|-.+=.+
T Consensus 1381 ~eD-L-k~l~e~nrVLGP-IYFfSFILLV~FILLNMFIAII~DSFsEVK~d 1428 (1634)
T PLN03223 1381 NED-L-KNLTGLQFVVGM-IYFYSYNIFVFMILFNFLLAIICDAFGEVKAN 1428 (1634)
T ss_pred HHH-H-HhhhcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 1 11111111 122 246677777777776 444567777766444
No 21
>KOG4390|consensus
Probab=76.36 E-value=0.9 Score=47.41 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=68.4
Q ss_pred HHHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccCCCCHHHHHH----HHHHH
Q psy16308 55 LVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLG----PYHMKFRSLSTTSE----CLFAL 126 (371)
Q Consensus 55 l~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG----~~~~nF~Tf~~S~~----TLFsl 126 (371)
|+.+|++|+-+..+++++|--||+..+..|.-.++.+.+-.++||- ++|- ....+|.++..++- |+=.+
T Consensus 295 FRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFAT---vMfYAEKg~~at~FTsIPaaFWYTIVTmTTL 371 (632)
T KOG4390|consen 295 FRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFAT---VMFYAEKGSSATKFTSIPAAFWYTIVTMTTL 371 (632)
T ss_pred eeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHH---HHHhhhccccccccccCcHhHhhheeeeeec
Confidence 4456677777888899999999999999988777777777777765 4443 33458998887763 32222
Q ss_pred HhCCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16308 127 INGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQY 183 (371)
Q Consensus 127 ~tGD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~ 183 (371)
-.||.+..++.. .++|.+ ..|.-.+++-+=+-||..+|+.+-++
T Consensus 372 GYGDMVp~TIaG--------KIfGsi-----CSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 372 GYGDMVPSTIAG--------KIFGSI-----CSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred cccccchHHHHH--------HHhhhh-----hcccceEEEeccccEEEechhHHHhh
Confidence 335654443211 122222 22223334444555666666666543
No 22
>KOG0501|consensus
Probab=73.12 E-value=1.4e+02 Score=33.47 Aligned_cols=101 Identities=20% Similarity=0.332 Sum_probs=58.5
Q ss_pred cccceeeeeccchhhhhhhHHHHHH----------------hhhcccC---------cchhHHHHH----HHHHHHHHHH
Q psy16308 8 LNLWYVMIIANDVLLILGSSIKEQI----------------ERKQFIG---------DQWNLCSVF----LGTGNLLVWF 58 (371)
Q Consensus 8 ~n~WnIf~~I~D~l~IiGsiL~i~i----------------~~~~~~~---------~~~~v~~il----lGi~~fl~wl 58 (371)
-..|-+++-|+|++..+-.++...- .-.-+.+ --||+...+ -|++++|+.+
T Consensus 248 ~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaL 327 (971)
T KOG0501|consen 248 NVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSAL 327 (971)
T ss_pred ceeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHH
Confidence 3568888888888877766554310 0000000 003333222 3899999999
Q ss_pred HHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy16308 59 GVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPY 109 (371)
Q Consensus 59 rLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~ 109 (371)
+++|+||..+-.|.|=.-|...+.-|. .++|+..+---.--|=|..-|++
T Consensus 328 KVVRLLRLGRVaRKLD~YlEYGAA~Lv-LLlC~y~lvAHWlACiWysIGd~ 377 (971)
T KOG0501|consen 328 KVVRLLRLGRVARKLDHYLEYGAAVLV-LLLCVYGLVAHWLACIWYSIGDY 377 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhheeccch
Confidence 999999998888888877777654332 22333222222333445555654
No 23
>KOG2243|consensus
Probab=66.89 E-value=14 Score=44.27 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=77.0
Q ss_pred HHHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--------CCCCHHHHHHH--HH
Q psy16308 55 LVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHM--------KFRSLSTTSEC--LF 124 (371)
Q Consensus 55 l~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~--------nF~Tf~~S~~T--LF 124 (371)
|-...+|-.---++.++.++.+...--+++.--.-++.++.+.|++..+..|....+ +-. -.-|+| ||
T Consensus 4790 ffaahlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~pdmk--cddmltcylf 4867 (5019)
T KOG2243|consen 4790 FFAAHLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEPDMK--CDDMLTCYLF 4867 (5019)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcc--chhhHHHHhh
Confidence 333444444445556666666666666665555556777888899999999874311 111 112333 45
Q ss_pred HHHhC----CchhhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Q psy16308 125 ALING----DDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYIN 186 (371)
Q Consensus 125 sl~tG----D~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~~ 186 (371)
.|..| .++-|.+++-. +...-++-.+|=++|.++.+.|++-+.-++|.|+|.+.+.+++.
T Consensus 4868 hmyvgvragggigdeiedpa--gd~yeiyriifditffffvivillaiiqgliidafgelrdqqeq 4931 (5019)
T KOG2243|consen 4868 HMYVGVRAGGGIGDEIEDPA--GDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQ 4931 (5019)
T ss_pred heeeeeecCCcccccccCCC--CCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHHHH
Confidence 55443 33444332221 11112455677777777788888888889999999999886653
No 24
>KOG0498|consensus
Probab=52.21 E-value=3.7e+02 Score=30.50 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHH
Q psy16308 148 WYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGE 199 (371)
Q Consensus 148 vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~~g~~~~dl~~Fi~~ 199 (371)
+++.+|+++=.+++.++|=||= ++|+..+....++... .-|..+|++.
T Consensus 323 iFsi~~mi~GllL~A~lIGNmt-~~iqs~tsR~~~~r~k---~rd~e~~m~~ 370 (727)
T KOG0498|consen 323 IFSIFIMLFGLLLFAYLIGNMT-ALLQSLTSRTEEMRDK---MRDAEQWMSR 370 (727)
T ss_pred HHHHHHHHHhHHHHHHHHhhHH-HhHHHHhHHHHHHHHH---HHHHHHHHHh
Confidence 6666666666667777777763 5566666554443331 3344444443
No 25
>KOG4663|consensus
Probab=37.05 E-value=1.2e+02 Score=29.26 Aligned_cols=32 Identities=13% Similarity=0.004 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Q psy16308 83 KVARFLLCAVLIYAGFTFCGWLVLGPYHMKFR 114 (371)
Q Consensus 83 ~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~ 114 (371)
.+.+.++.++++-.+.|++|++++..+...|+
T Consensus 112 ~~Wn~Gvii~lLt~~tAflGYvl~w~Qms~W~ 143 (210)
T KOG4663|consen 112 TVWNKGVIILLLTIVTAFLGYVLPWGQMSFWG 143 (210)
T ss_pred hhhhhhHHHHHHHHHHhHhcccCchhhhhhhh
Confidence 56788899999999999999999998876665
No 26
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=33.31 E-value=2.8e+02 Score=29.19 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=35.9
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHhcCcc
Q psy16308 69 TYNVVILTLKKAFPKVARFLLCAVLIYAGFT-FCGWLVLGPYH 110 (371)
Q Consensus 69 ~i~iLi~TL~~Sip~L~~Flvl~~lIffgFA-ilG~~lFG~~~ 110 (371)
+..+...++...+|.+....+.+.+++|+|+ ++||..+|...
T Consensus 291 g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~ 333 (416)
T PF01235_consen 291 GAALTQAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKC 333 (416)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788999999999999999999999996 58999999754
No 27
>PF00864 P2X_receptor: ATP P2X receptor; InterPro: IPR001429 P2X purinoceptors are cell membrane ion channels, gated by adenosine 5'-triphosphate (ATP) and other nucleotides; they have been found to be widely expressed on mammalian cells, and, by means of their functional properties, can be differentiated into three sub-groups. The first group is almost equally well activated by ATP and its analogue alphabetamethyleneATP, whereas, the second group is not activated by the latter compound. A third type of receptor (also called P2Z) is distinguished by the fact that repeated or prolonged agonist application leads to the opening of much larger pores, allowing large molecules to traverse the cell membrane. This increased permeability rapidly leads to cell death, and lysis. Molecular cloning studies have identified seven P2X receptor subtypes, designated P2X1-P2X7. These receptors are proteins that share 35-48% amino acid identity, and possess two putative transmembrane (TM) domains, separated by a long (~270 residues) intervening sequence, which is thought to form an extracellular loop. Around 1/4 of the residues within the loop are invariant between the cloned subtypes, including 10 characteristic cysteines. Studies of the functional properties of heterologously expressed P2X receptors, together with the examination of their distribution in native tissues, suggests they likely occur as both homo- and heteromultimers in vivo [, ]. This entry represents all P2X purinoreceptor subtypes.; GO: 0004872 receptor activity, 0005216 ion channel activity, 0005524 ATP binding, 0006811 ion transport, 0016020 membrane; PDB: 2BP5_P 4DW1_A 4DW0_A 3I5D_A 3H9V_A.
Probab=31.72 E-value=27 Score=36.25 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=11.6
Q ss_pred EEeeecCcccchhh
Q psy16308 349 TVIIKKNIHFPALA 362 (371)
Q Consensus 349 ~~~~~~~~~~~~~~ 362 (371)
||.||.+||||..-
T Consensus 172 Tv~IKN~I~Fp~F~ 185 (373)
T PF00864_consen 172 TVFIKNSIRFPKFN 185 (373)
T ss_dssp EEEEEEEEEECCCT
T ss_pred EEEEecceecCCCC
Confidence 67899999999753
No 28
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=30.72 E-value=2.9e+02 Score=29.60 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHhcCcccCCCCHHHHHHHHHHHHh
Q psy16308 68 KTYNVVILTLKKAFPKVARFLLCAVLIYAGFT-FCGWLVLGPYHMKFRSLSTTSECLFALIN 128 (371)
Q Consensus 68 ~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFA-ilG~~lFG~~~~nF~Tf~~S~~TLFsl~t 128 (371)
.+..+...++...+|.+....+.+.+++|+|+ ++||..+|..+-+|-.=......+|+++.
T Consensus 334 ~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~~~k~~~~~~r~~~ 395 (452)
T COG1115 334 SGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTILGWYYYGEKNIEFLFGSKKAILLYRLIV 395 (452)
T ss_pred chHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 67888999999999999999999999999996 59999999876544332334555555543
No 29
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=29.72 E-value=1.6e+02 Score=24.02 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy16308 149 YLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYI 185 (371)
Q Consensus 149 lg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~ 185 (371)
--.+|+++||++++-|..=+|+-+|....|.+-+...
T Consensus 16 ~efLF~ilfIvlmipI~pll~~~~i~~~~E~l~e~Y~ 52 (72)
T PF13198_consen 16 TEFLFFILFIVLMIPISPLLFVWIIGKIIEPLFELYK 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999888777777777777776665443
No 30
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=29.10 E-value=3.3e+02 Score=30.76 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=26.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CCCCHHHHHHHHHHHHhC
Q psy16308 76 TLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHM-KFRSLSTTSECLFALING 129 (371)
Q Consensus 76 TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~-nF~Tf~~S~~TLFsl~tG 129 (371)
+..-..|......++.++++..++++|+.++--... -|+...++..+++.++.|
T Consensus 333 ~~~~l~p~a~~~~l~~~lv~~r~~i~~s~~~~i~~~~~~~~~~~~~~~~~~l~s~ 387 (700)
T COG1480 333 ASGLLVPPALGPMLLILLVFLRIAIFSSSMIAIALLYLFGGSYNSEIALIALLSS 387 (700)
T ss_pred hhhhccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 344445666666666666666666665554432110 122333444555555554
No 31
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=27.94 E-value=6.6e+02 Score=25.62 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHhccCCC
Q psy16308 149 YLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEIQEDET 205 (371)
Q Consensus 149 lg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~~g~~~~dl~~Fi~~~~~dp~ 205 (371)
++.++-..+.++...+++=+.+|++.-.|+.-+..++...+++|+.+=+++.+.||.
T Consensus 175 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~ 231 (342)
T TIGR01404 175 APIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPE 231 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHH
Confidence 344444555555555666667889988888888888888999998888887777763
No 32
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=27.20 E-value=3.9e+02 Score=22.63 Aligned_cols=56 Identities=9% Similarity=0.169 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy16308 52 GNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPY 109 (371)
Q Consensus 52 ~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~ 109 (371)
..+++.+|++|.++..+..+.+-.-+......+... .-..+.+++..+++...|..
T Consensus 62 ~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~a~~~~~ 117 (200)
T PF00520_consen 62 LRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDL--FKFILLLFIVLLFFACIGYQ 117 (200)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeccccccccccccccccccccccccccccc--cccccccccccccccchhhe
Confidence 456666677777777776666444444444333332 33344444555555555533
No 33
>KOG1419|consensus
Probab=26.33 E-value=1.4e+02 Score=32.89 Aligned_cols=108 Identities=17% Similarity=0.154 Sum_probs=49.6
Q ss_pred Cccccccc-ccceeeeeccchhhhhhhHHHHHHh--hhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHH
Q psy16308 1 MEGRLEFL-NLWYVMIIANDVLLILGSSIKEQIE--RKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTL 77 (371)
Q Consensus 1 ~~dKl~F~-n~WnIf~~I~D~l~IiGsiL~i~i~--~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL 77 (371)
|+++++|. .+-.++ |+++|+.++.-+.+. ...+. .-.++-..|+..+|++|.=+-.-...+|-..+
T Consensus 158 ~~GRLrFarkp~cvI----Diivi~Asi~vl~~g~qG~vfa-------tSalrslRFlQILRmlr~DRrggTWKLLGSvV 226 (654)
T KOG1419|consen 158 WYGRLRFARKPFCVI----DIIVIIASIAVLAAGSQGNVFA-------TSALRSLRFLQILRMLRMDRRGGTWKLLGSVV 226 (654)
T ss_pred ceeeEEeecCCceEE----EEeeeeeeeeEEEecCccceee-------hhhhhhhHHHHHHHHHHhhccCchhhhhhhhh
Confidence 46778874 666666 666776666544443 22222 22233344555555555444443333333333
Q ss_pred HHhhHHHH-----HHHHHHHHHHHHHHHHHHHHhc-CcccCCCCHHHHH
Q psy16308 78 KKAFPKVA-----RFLLCAVLIYAGFTFCGWLVLG-PYHMKFRSLSTTS 120 (371)
Q Consensus 78 ~~Sip~L~-----~Flvl~~lIffgFAilG~~lFG-~~~~nF~Tf~~S~ 120 (371)
-.--..|+ .|+++++.-|+.|..=-- .=| ..+..|.|...|+
T Consensus 227 ~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd-~~~e~~n~~F~TyADAL 274 (654)
T KOG1419|consen 227 YAHSKELITTWYIGFLVLIFSSFLVYLAEKD-AQGEGTNDEFPTYADAL 274 (654)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccccccchhHHHHH
Confidence 22222332 233444444444432000 000 1234698888775
No 34
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=25.06 E-value=5.8e+02 Score=26.04 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=12.2
Q ss_pred eccchhhhhhhHHHH
Q psy16308 16 IANDVLLILGSSIKE 30 (371)
Q Consensus 16 ~I~D~l~IiGsiL~i 30 (371)
+++|++.++|++++-
T Consensus 167 i~GDll~l~~a~lya 181 (334)
T PF06027_consen 167 ILGDLLALLGAILYA 181 (334)
T ss_pred chhHHHHHHHHHHHH
Confidence 578999999998853
No 35
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=23.96 E-value=5.5e+02 Score=28.22 Aligned_cols=24 Identities=8% Similarity=0.329 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q psy16308 156 SFISLYIYVILSLFISVIMDAYET 179 (371)
Q Consensus 156 SFIlL~ifIILNmFIAII~daYee 179 (371)
.++....|++.++++.||+=+.--
T Consensus 585 ~~~~~il~~~y~~i~~ilLlNlLI 608 (743)
T TIGR00870 585 EFVGLLLFGAYNVIMYILLLNMLI 608 (743)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666677776544433
No 36
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=22.24 E-value=5.3e+02 Score=22.50 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=13.6
Q ss_pred hcCCChhHHHHHHHHhccC
Q psy16308 185 INGFPKSDVIKFMGEIQED 203 (371)
Q Consensus 185 ~~g~~~~dl~~Fi~~~~~d 203 (371)
+...+++|++..++...+.
T Consensus 158 ~~~~s~eel~~lv~~~~e~ 176 (183)
T PF01595_consen 158 DPAVSEEELRSLVEEGEEE 176 (183)
T ss_pred cCCCCHHHHHHHHHhHHHC
Confidence 3456889999988875544
No 37
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=21.83 E-value=2.2e+02 Score=33.52 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred ccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhH------
Q psy16308 9 NLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFP------ 82 (371)
Q Consensus 9 n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip------ 82 (371)
..|+.+.|+.-++-|......+..-...+. ..+.+-..++|+. +.++..|+|
T Consensus 931 ~k~y~ltFi~SIiwIsi~SyilV~~at~IG-~vlGIse~VmGlT---------------------fLA~GTSIPDlisSv 988 (1096)
T TIGR00927 931 RKFFVITFLGSIMWIAMFSYLMVWWAHQVG-ETIGISEEIMGLT---------------------ILAAGTSIPDLITSV 988 (1096)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHHHHhh-hhcCCChhhhhhh---------------------hhhhhcccHHHHHHH
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC--HHHHHHHHHHHHhCCchhhhhhcCCCC
Q psy16308 83 ------------------KVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRS--LSTTSECLFALINGDDMFATFSIMPKK 142 (371)
Q Consensus 83 ------------------~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~T--f~~S~~TLFsl~tGD~~~dtf~~l~~~ 142 (371)
+++++++++.+-++++..+. |.....+.+ +..++..||.++ ++-...-....
T Consensus 989 ivArkG~gdMAVan~iGSNIFnIllgLGlPWlI~~li~----g~~pV~V~S~GL~~sI~LLF~~L----lflissI~l~k 1060 (1096)
T TIGR00927 989 IVARKGLGDMAVSSSVGSNIFDITVGLPVPWLLFSLIN----GLQPVPVSSNGLFCAIVLLFLML----LFVISSIASCK 1060 (1096)
T ss_pred HHHHccCCcceeeeccccchheeeeeccHHHHHHHHhc----cCcceeecCccHHHHHHHHHHHH----HHHHHHHHhcc
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHH
Q psy16308 143 SAMLWWYLRIYLYSFISLYIYVILS 167 (371)
Q Consensus 143 s~~~~vlg~iYfvSFIlL~ifIILN 167 (371)
-.+...+|.++++.|+++.++.++.
T Consensus 1061 wrL~R~lGivlLvlYvvFLV~aiLi 1085 (1096)
T TIGR00927 1061 WRMNKILGFTMFLLYFVFLIISVML 1085 (1096)
T ss_pred eEEechHHHHHHHHHHHHHHHHHHH
No 38
>PRK06298 type III secretion system protein; Validated
Probab=21.70 E-value=8.9e+02 Score=24.93 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHhccCCC
Q psy16308 149 YLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEIQEDET 205 (371)
Q Consensus 149 lg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~~g~~~~dl~~Fi~~~~~dp~ 205 (371)
++.++-..+.++...++.=+.+|++.-.|+.-+..++.-.+++|+.+=+++.+.||.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~ 233 (356)
T PRK06298 177 AQIFKEILYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPE 233 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHH
Confidence 333444445555555566667888888888888888888999998888887777763
No 39
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=20.99 E-value=4.9e+02 Score=22.57 Aligned_cols=64 Identities=16% Similarity=0.299 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHH---HHhhhhccccc------hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16308 43 NLCSVFLGTGNLLVWF---GVLRYLGFFKT------YNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLG 107 (371)
Q Consensus 43 ~v~~illGi~~fl~wl---rLLRyLrf~~~------i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG 107 (371)
.++.++.|+..++.=+ .+.||.+|..+ .++++.++..+. .+....+...++..|...+..-.+.
T Consensus 37 ~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l~~~~ 109 (136)
T PF08507_consen 37 GVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTLCLGQ-SILSIIIGLLLFLVGVIYIILGFFC 109 (136)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555555444422 24444444332 233344444444 5555555555555555544444443
Done!