Query psy16308
Match_columns 371
No_of_seqs 191 out of 526
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 18:00:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dxw_A Navrh, ION transport pr 99.9 4.3E-24 1.5E-28 195.2 9.3 157 5-182 71-228 (229)
2 3rvy_A ION transport protein; 99.8 1.6E-20 5.6E-25 176.7 8.8 159 4-185 87-247 (285)
3 4f4l_A ION transport protein; 99.8 8.8E-20 3E-24 153.2 5.3 105 80-188 2-108 (112)
4 2r9r_B Paddle chimera voltage 99.5 4E-13 1.4E-17 138.0 16.1 187 5-205 268-455 (514)
5 3beh_A MLL3241 protein; transm 99.1 1.1E-09 3.8E-14 105.3 12.6 120 54-182 99-219 (355)
6 2kav_A Sodium channel protein 98.5 4.7E-09 1.6E-13 90.8 -1.7 66 165-235 14-80 (129)
7 1orq_C Potassium channel; volt 97.6 0.0015 5.1E-08 58.7 14.9 117 52-180 102-221 (223)
8 1ors_C Potassium channel; volt 96.7 0.0011 3.7E-08 56.3 4.2 68 3-85 63-130 (132)
9 4dck_A Sodium channel protein 95.8 0.001 3.5E-08 59.8 -1.2 56 175-235 1-57 (168)
10 2a9h_A Voltage-gated potassium 94.4 0.16 5.3E-06 44.4 8.5 58 110-180 79-140 (155)
11 2ih3_C Voltage-gated potassium 91.7 3 0.0001 34.5 12.0 59 111-182 57-119 (122)
12 3vou_A ION transport 2 domain 80.1 13 0.00045 31.2 10.0 89 68-174 9-102 (148)
13 4h33_A LMO2059 protein; bilaye 70.3 7.8 0.00027 32.6 5.9 56 111-179 39-98 (137)
14 2r9r_B Paddle chimera voltage 64.3 17 0.00059 37.0 8.1 50 53-107 309-358 (514)
15 2q67_A Potassium channel prote 53.4 38 0.0013 27.4 6.9 29 148-177 74-102 (114)
16 3rvy_A ION transport protein; 53.1 15 0.00052 33.6 5.0 19 54-72 115-133 (285)
17 3ukm_A Potassium channel subfa 49.2 64 0.0022 30.6 8.7 87 84-177 171-261 (280)
18 1xl4_A Inward rectifier potass 46.9 1.9E+02 0.0065 27.3 11.7 91 74-178 39-136 (301)
19 3eff_K Voltage-gated potassium 44.5 1.3E+02 0.0044 24.6 10.6 57 111-180 36-96 (139)
20 2kyh_A KVAP, voltage-gated pot 42.8 11 0.00039 32.2 2.2 31 52-82 112-142 (147)
21 4gx0_A TRKA domain protein; me 40.8 1.2E+02 0.0042 30.2 9.8 50 79-128 15-64 (565)
22 4dxw_A Navrh, ION transport pr 22.2 54 0.0018 28.9 3.0 18 56-73 102-119 (229)
No 1
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.90 E-value=4.3e-24 Score=195.22 Aligned_cols=157 Identities=20% Similarity=0.286 Sum_probs=127.0
Q ss_pred ccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHHH
Q psy16308 5 LEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKV 84 (371)
Q Consensus 5 l~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L 84 (371)
..|.++||++ |+++++.++++... + ..+.+.++++.+|++|++++.|+++.+..|+.+|.|++
T Consensus 71 ~y~~~~wni~----D~~~v~~~~i~~~~------~-------~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l 133 (229)
T 4dxw_A 71 DFFKSGWNIF----DTVIVAISLIPIPN------N-------SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRV 133 (229)
T ss_dssp ----CHHHHH----HHHHHHHTTCC---------------------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHH----HHHHHHHHHhhcCc------c-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4578999999 66666655554321 0 01122346778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcc-cCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHH
Q psy16308 85 ARFLLCAVLIYAGFTFCGWLVLGPYH-MKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIY 163 (371)
Q Consensus 85 ~~Flvl~~lIffgFAilG~~lFG~~~-~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~if 163 (371)
.++++++++++++||++|+.+||... ++|+|+++|+.++|++++||++.|.+.+..+.+ .++.+||++|+++..+
T Consensus 134 ~~~~~~l~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~----~~~~~~f~~~~~i~~~ 209 (229)
T 4dxw_A 134 FFVSLLLFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIY----WWSWVYFFSFIIICSI 209 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTC----TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhC----CcHHHHHHHHHHHHHH
Confidence 99999999999999999999999865 479999999999999999999988765543333 3688999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q psy16308 164 VILSLFISVIMDAYETIKQ 182 (371)
Q Consensus 164 IILNmFIAII~daYeevK~ 182 (371)
+++|||+|||.|+|+++++
T Consensus 210 i~lNlfiavi~~~f~~~~~ 228 (229)
T 4dxw_A 210 TILNLVIAILVDVVIQKKL 228 (229)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999997654
No 2
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.82 E-value=1.6e-20 Score=176.66 Aligned_cols=159 Identities=15% Similarity=0.242 Sum_probs=125.4
Q ss_pred cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308 4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK 83 (371)
Q Consensus 4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~ 83 (371)
+..|.++||++ |+++++.+++... .+ +++..+++++|++|+++++++++.+..|+.++.|+
T Consensus 87 ~~y~~~~wn~~----Dl~~v~~~~i~~~------~~---------~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~ 147 (285)
T 3rvy_A 87 ISFFKDPWSLF----DFFVVAISLVPTS------SG---------FEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPG 147 (285)
T ss_dssp GGGGGCHHHHH----HHHHHHHHHSCSS------SS---------CTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGG
T ss_pred HHHHcCChHHh----HHHHHHHHHHccc------ch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999 6666665554321 11 23456778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccc-CCCCHHHHHHHHHHHHhCCchh-hhhhcCCCCCcccchhhHHHHHHHHHHH
Q psy16308 84 VARFLLCAVLIYAGFTFCGWLVLGPYHM-KFRSLSTTSECLFALINGDDMF-ATFSIMPKKSAMLWWYLRIYLYSFISLY 161 (371)
Q Consensus 84 L~~Flvl~~lIffgFAilG~~lFG~~~~-nF~Tf~~S~~TLFsl~tGD~~~-dtf~~l~~~s~~~~vlg~iYfvSFIlL~ 161 (371)
+.++++++++++++||++|+.+||...+ +|+|++.|+.++|.++|++++. |.+......+ .+|.+|+++|++++
T Consensus 148 l~~~~~~~~~~~~~fa~~g~~~f~~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~----~~~~~~f~~~~~i~ 223 (285)
T 3rvy_A 148 MLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVY----PYAWVFFIPFIFVV 223 (285)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTC----TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcC----ChHHhhHHHHHHHH
Confidence 9999999999999999999999997654 5999999999999999998776 6542222223 36889999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHh
Q psy16308 162 IYVILSLFISVIMDAYETIKQYYI 185 (371)
Q Consensus 162 ifIILNmFIAII~daYeevK~~~~ 185 (371)
.++++|||+|||.++|++.+++++
T Consensus 224 ~~~~lnl~~aii~~~f~~~~~~~~ 247 (285)
T 3rvy_A 224 TFVMINLVVAICVDAMAILNQKEE 247 (285)
T ss_dssp HHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887554
No 3
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=99.78 E-value=8.8e-20 Score=153.17 Aligned_cols=105 Identities=17% Similarity=0.181 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CCCCHHHHHHHHHHHHhCCchhhhh-hcCCCCCcccchhhHHHHHHH
Q psy16308 80 AFPKVARFLLCAVLIYAGFTFCGWLVLGPYHM-KFRSLSTTSECLFALINGDDMFATF-SIMPKKSAMLWWYLRIYLYSF 157 (371)
Q Consensus 80 Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~-nF~Tf~~S~~TLFsl~tGD~~~dtf-~~l~~~s~~~~vlg~iYfvSF 157 (371)
|.+.+.++++++++++++||++|+.+||...+ +|+|+++|+.|||+++|||+|.+.+ +.+.+.+ ..+.+||++|
T Consensus 2 s~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~----~~a~iyFi~f 77 (112)
T 4f4l_A 2 SHMGVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVH----PNAWVFFIPF 77 (112)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTS----TTTHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHCCCccccccCHHHHHHHHHHHHHccccHHHHHHHHHhcC----cHHHHHHHHH
Confidence 56788999999999999999999999998754 6999999999999999999886543 2333333 4678999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCC
Q psy16308 158 ISLYIYVILSLFISVIMDAYETIKQYYINGF 188 (371)
Q Consensus 158 IlL~ifIILNmFIAII~daYeevK~~~~~g~ 188 (371)
+++..++++|+|+|||.|+|++.++++++..
T Consensus 78 i~i~~fi~lNLfiaVi~~~f~~~~~~~~~~~ 108 (112)
T 4f4l_A 78 IMLTTFTVLNLFIGIIVDAMAITKEQEEEAK 108 (112)
T ss_dssp HHHHHHHHHHHHTTTC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998776543
No 4
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.48 E-value=4e-13 Score=137.96 Aligned_cols=187 Identities=10% Similarity=0.055 Sum_probs=121.0
Q ss_pred ccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHHH
Q psy16308 5 LEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKV 84 (371)
Q Consensus 5 l~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L 84 (371)
..|.++||++ |+++|+.+++.........++..+......+.+..+++.+|++|++++.++++.+..|+..|++.+
T Consensus 268 ~Y~ks~wnii----Dli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l 343 (514)
T 2r9r_B 268 GFFTNIMNII----DIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMREL 343 (514)
T ss_dssp SSTTSHHHHH----HHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHH
T ss_pred HHHhchhHHH----HHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3467899999 566666555544332111111001111123455667777888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc-ccCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHH
Q psy16308 85 ARFLLCAVLIYAGFTFCGWLVLGPY-HMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIY 163 (371)
Q Consensus 85 ~~Flvl~~lIffgFAilG~~lFG~~-~~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~if 163 (371)
..+++++++.++.||.+++...+.. ..+|.++..|+...+..+++.+.-| +.+.+ ..|++ +.++++++.+
T Consensus 344 ~~ll~~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGD----i~P~t----~~gr~-f~~~~~l~G~ 414 (514)
T 2r9r_B 344 GLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGD----MVPTT----IGGKI-VGSLCAIAGV 414 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSS----SCCCS----HHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEecccCC----CCCCC----cchHh-hehhHHHHHH
Confidence 9988888888999999999887753 4579999999999999999654332 22222 45655 5567777889
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHhccCCC
Q psy16308 164 VILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEIQEDET 205 (371)
Q Consensus 164 IILNmFIAII~daYeevK~~~~~g~~~~dl~~Fi~~~~~dp~ 205 (371)
+++|++||+|.++|++..+.++.. .+.++...+..|.+.|.
T Consensus 415 ~~l~l~iavI~~~f~~~~~~~~~~-~~~~l~~h~iicg~~~~ 455 (514)
T 2r9r_B 415 LTIALPVPVIVSNFNYFYHRETEG-EEQAQYLQVTSSPKIPS 455 (514)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCEEEeCCCcc
Confidence 999999999999999987744432 33445555555666654
No 5
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.05 E-value=1.1e-09 Score=105.32 Aligned_cols=120 Identities=10% Similarity=0.053 Sum_probs=97.0
Q ss_pred HHHHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cCCCCHHHHHHHHHHHHhCCch
Q psy16308 54 LLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYH-MKFRSLSTTSECLFALINGDDM 132 (371)
Q Consensus 54 fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~-~nF~Tf~~S~~TLFsl~tGD~~ 132 (371)
+++.+|++|++++.+.++.+..++.++.+.+..+++.+++++++||.+++.+.+... ++|+++..|+...+..++.-+.
T Consensus 99 ~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGy 178 (355)
T 3beh_A 99 LYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGY 178 (355)
T ss_dssp GGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCC
Confidence 556689999999999999999999999999999999999999999999999998653 3699999999999988884332
Q ss_pred hhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy16308 133 FATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQ 182 (371)
Q Consensus 133 ~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~ 182 (371)
-| +.+.+ ..|+++. ++++++.++++++++++|.+.+.+..+
T Consensus 179 gd----~~p~t----~~~~~~~-~~~~~~g~~~~~~~~~~i~~~~~~~~~ 219 (355)
T 3beh_A 179 GD----TIPQS----FAGRVLA-GAVMMSGIGIFGLWAGILATGFYQEVR 219 (355)
T ss_dssp SS----SCCCS----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC----CCCCC----hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222 4677765 456666789999999999999886544
No 6
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=98.54 E-value=4.7e-09 Score=90.81 Aligned_cols=66 Identities=8% Similarity=0.090 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHH-hccCCCCCccccCcccccCcHHHHHHhhhhhhhHHh
Q psy16308 165 ILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGE-IQEDETNHDFWSSIETASFSFREQIHKMHKSIALAT 235 (371)
Q Consensus 165 ILNmFIAII~daYeevK~~~~~g~~~~dl~~Fi~~-~~~dp~sg~~~~~~~~~~~s~~ell~~~~~~l~~~~ 235 (371)
++|||||||+|+|+.+.++++.+++++|+++|++. +++||.++++-.- ..+.+++..+.++|.+.+
T Consensus 14 ~LNLfIAVIlenF~~~~~~~~~~l~~~dl~~F~~~W~~fDP~aTg~I~~-----~~L~~ll~~L~pPLgi~k 80 (129)
T 2kav_A 14 LVPRGSHMASENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEF-----AKLSDFADALDPPLLIAK 80 (129)
T ss_dssp ----------CCSCCTTSSCSCSSCHHHHHHHHHHHHHHCTTCCCEECG-----GGHHHHHHHSCTTSCCCT
T ss_pred hhheeeeeeeccHHHHHHhhccCCCHHHHHHHHHHHHhcCCCCceEEeH-----HHHHHHHHhCCccccCCC
Confidence 69999999999999999988888999999999999 8999988887663 358899999999998855
No 7
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=97.61 E-value=0.0015 Score=58.74 Aligned_cols=117 Identities=11% Similarity=0.033 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhhhc-cccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccCCCCHHHHHHHHHHHHh
Q psy16308 52 GNLLVWFGVLRYLG-FFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGP--YHMKFRSLSTTSECLFALIN 128 (371)
Q Consensus 52 ~~fl~wlrLLRyLr-f~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~--~~~nF~Tf~~S~~TLFsl~t 128 (371)
..+++.+|++|.++ +.+..+.+..+++. +.+...+..++++.+.+|.. +..+.. ..++|.++..|+--.+..++
T Consensus 102 lRllRllR~~r~~~~~~~~~~~l~~~~~~--~~l~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~s~y~~~~t~t 178 (223)
T 1orq_C 102 VRLLRFLRILLIISRGSKFLSAIADAADK--IRFYHLFGAVMLTVLYGAFA-IYIVEYPDPNSSIKSVFDALWWAVVTAT 178 (223)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHTTSSSTTCSCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHhCCcCCCcCcchhHHHhHHhHHh
Confidence 34445555555555 23334555555543 34555555555555555543 333332 23468999999998888777
Q ss_pred CCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16308 129 GDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI 180 (371)
Q Consensus 129 GD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeev 180 (371)
.-+.-| +.+.+ ..|+++... .++.-..+++++++++.+.+++.
T Consensus 179 TvGyGd----i~P~t----~~~~~~~~~-~~~~G~~~~~~~i~~i~~~~~~~ 221 (223)
T 1orq_C 179 TVGYGD----VVPAT----PIGKVIGIA-VMLTGISALTLLIGTVSNMFQKI 221 (223)
T ss_dssp TCCCCS----SCCCS----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCC----CCCCC----HhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 322111 22222 467776644 44456678899999999888764
No 8
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=96.75 E-value=0.0011 Score=56.29 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=48.8
Q ss_pred ccccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhH
Q psy16308 3 GRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFP 82 (371)
Q Consensus 3 dKl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip 82 (371)
+|++|+. ||++ |+++|+.+.+.... +.. .. .+.+..+++.+|++|+.++.++++.+..|+.+|.+
T Consensus 63 ~~~~y~~-~nii----Dllailp~~~~~~~-~~~-----l~----~lr~lRllRv~Rvlkl~r~~~~l~~l~~~l~~s~~ 127 (132)
T 1ors_C 63 DPAGYVK-KTLY----EIPALVPAGLLALI-EGH-----LA----GLGLFRLVRLLRFLRILLIISRGSKFLSAIADAAD 127 (132)
T ss_dssp STTTTTT-TCGG----GTGGGSCHHHHHHH-HHH-----HH----HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHH-HHHH----HHHHHHHHHHHHHh-cch-----HH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5777777 9999 55556555544433 110 11 12344677889999999999999999999999999
Q ss_pred HHH
Q psy16308 83 KVA 85 (371)
Q Consensus 83 ~L~ 85 (371)
++.
T Consensus 128 ~l~ 130 (132)
T 1ors_C 128 KLV 130 (132)
T ss_dssp HHS
T ss_pred Hhc
Confidence 874
No 9
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=95.78 E-value=0.001 Score=59.77 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHH-hccCCCCCccccCcccccCcHHHHHHhhhhhhhHHh
Q psy16308 175 DAYETIKQYYINGFPKSDVIKFMGE-IQEDETNHDFWSSIETASFSFREQIHKMHKSIALAT 235 (371)
Q Consensus 175 daYeevK~~~~~g~~~~dl~~Fi~~-~~~dp~sg~~~~~~~~~~~s~~ell~~~~~~l~~~~ 235 (371)
|+|+.++++++.+++++|+++|+.. +++||.+++|-.- ..+.+++..+.++|.+++
T Consensus 1 eNF~~~t~d~~~~L~~~dl~~F~~~W~~fDP~ATgfI~~-----~~L~~~l~~L~pPLg~~k 57 (168)
T 4dck_A 1 ENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEY-----SVLSDFADALSEPLRIAK 57 (168)
T ss_dssp ---CBCCTTCSSCBCHHHHHHHHHHHHHHCTTCCSEEEG-----GGHHHHHHHSCTTTCCCS
T ss_pred CchhhhhhccccCCCHHHHHHHHHHHHHhCCCCcceeeH-----HHHHHHHHhcCCCCcCCC
Confidence 5677788878889999999999999 8999999888663 358899999999998854
No 10
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=94.38 E-value=0.16 Score=44.40 Aligned_cols=58 Identities=9% Similarity=-0.058 Sum_probs=35.6
Q ss_pred ccCCCCHHHHHHHHHHHHh----CCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16308 110 HMKFRSLSTTSECLFALIN----GDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI 180 (371)
Q Consensus 110 ~~nF~Tf~~S~~TLFsl~t----GD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeev 180 (371)
..+|.++..|+---+..++ ||. .+.+ ..|+++...++++ -..++-+.++++.+.+.+.
T Consensus 79 ~~~~~s~~~a~y~s~vTltTVGYGDi--------~P~t----~~gr~~~~~~~l~-Gv~~~a~~~~~i~~~~~~~ 140 (155)
T 2a9h_A 79 GAALISYPDALWWSVETATTVGYGDL--------YPVT----LWGRCVAVVVMVA-GITSYGLVFAAVATWFVGR 140 (155)
T ss_dssp CSSTTSHHHHHHHHHHHHTTCCCSSS--------CCCS----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSC
T ss_pred CCccCcccceeheeeeeeecccCCCC--------CCCC----hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3468999998876555555 342 1222 4677776655554 4556677777777666543
No 11
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=91.67 E-value=3 Score=34.46 Aligned_cols=59 Identities=8% Similarity=0.001 Sum_probs=37.8
Q ss_pred cCCCCHHHHHHHHHHHHh----CCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy16308 111 MKFRSLSTTSECLFALIN----GDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQ 182 (371)
Q Consensus 111 ~nF~Tf~~S~~TLFsl~t----GD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~ 182 (371)
+++.++..|+---+..++ ||. .+.+ ..|+++...++++ -..++-+.++.+.+.+.+..+
T Consensus 57 ~~~~~~~~a~y~~~~T~tTvGyGDi--------~P~t----~~gr~~~~~~~~~-Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 57 AQLITYPRALWWACETATTVAYGDL--------YPVT----LWGRLVAVVVMVA-GITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CCCCSHHHHHHHHHHHHTTCCCSSS--------CCCS----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCccccchhheeeeeeeeecCCC--------CCCC----ccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 468899888865555544 342 1222 4677777655554 455677888888887776655
No 12
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=80.09 E-value=13 Score=31.24 Aligned_cols=89 Identities=9% Similarity=0.057 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHh----CCchhhhhhcCCCC
Q psy16308 68 KTYNVVILTLKKAFPK-VARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALIN----GDDMFATFSIMPKK 142 (371)
Q Consensus 68 ~~i~iLi~TL~~Sip~-L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~TLFsl~t----GD~~~dtf~~l~~~ 142 (371)
..++.+...+.++.+. .+.+.+++++++++++.+++... ++ -++..|+--.+..++ ||. .+.
T Consensus 9 ~~l~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----e~-~~~~~a~y~~~~t~tTvGyGd~--------~p~ 75 (148)
T 3vou_A 9 LTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTV----EG-LRPLDALYFSVVTLTTVGDGNF--------SPQ 75 (148)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHT----SC-CCHHHHHHHHHHHHTTCCCSSC--------CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC-CCHHHHHHHHHHHHHccCCCCC--------CCC
Confidence 3444445555555433 33334444444444444444322 22 256666655444444 342 112
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16308 143 SAMLWWYLRIYLYSFISLYIYVILSLFISVIM 174 (371)
Q Consensus 143 s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~ 174 (371)
+ ..++++.+.++++.+.++. ++++.+.
T Consensus 76 t----~~~r~~~~~~~~~g~~~~~-~~~~~~~ 102 (148)
T 3vou_A 76 T----DFGKVFTILYIFIGIGLVF-GFIHKLA 102 (148)
T ss_dssp S----HHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred C----ccHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 2 4677877777776544433 4444443
No 13
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=70.30 E-value=7.8 Score=32.57 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=36.0
Q ss_pred cCCCCHHHHHHHHHHHHh----CCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16308 111 MKFRSLSTTSECLFALIN----GDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYET 179 (371)
Q Consensus 111 ~nF~Tf~~S~~TLFsl~t----GD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYee 179 (371)
.++.++..|+---+..++ ||. .+.+ ..|+++.+.++++ -..++-++++.+.+.+.+
T Consensus 39 ~~~~~~~~a~y~~~~T~tTvGyGDi--------~P~t----~~gr~~~~~~~~~-g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 39 PEINNYPDALWWAIVTATTVGYGDI--------VPVT----PIGRILASIMMLF-GIAFIGMITSTITNFFRC 98 (137)
T ss_dssp SSCCSHHHHHHHHHHHHTTCCCSSS--------CCCS----HHHHHHHHHHHHH-HHHHHHHHHHHHHTTTTT
T ss_pred cCCCCHHHHHHHHHHHHHcccCCCC--------CCCC----HhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 467888888765555544 342 1222 5788877666665 455678888888877653
No 14
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=64.30 E-value=17 Score=36.97 Aligned_cols=50 Identities=16% Similarity=0.243 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16308 53 NLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLG 107 (371)
Q Consensus 53 ~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG 107 (371)
.+++.+|++|.++..+...- ++.+..++.....-+. +++.+.++|+.+||
T Consensus 309 rvlRllRvlRilkL~r~~~~-l~~l~~tl~~s~~~l~----~ll~~l~i~~~if~ 358 (514)
T 2r9r_B 309 QIFRIMRILRIFKLSRHSKG-LQILGQTLKASMRELG----LLIFFLFIGVILFS 358 (514)
T ss_dssp HHHHHHGGGGGGGGGGSCHH-HHHHHHHHHHTHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34444444445555544443 3445555444333222 23344567777776
No 15
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=53.39 E-value=38 Score=27.38 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy16308 148 WYLRIYLYSFISLYIYVILSLFISVIMDAY 177 (371)
Q Consensus 148 vlg~iYfvSFIlL~ifIILNmFIAII~daY 177 (371)
..++++...++++.. .++-+.++.+.+..
T Consensus 74 ~~gr~~~~~~~~~G~-~~~~~~~~~l~~~~ 102 (114)
T 2q67_A 74 DFGKIFTILYIFIGI-GLVFGFIHKLAVNV 102 (114)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 467777766666543 33455555555444
No 16
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=53.08 E-value=15 Score=33.62 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=10.0
Q ss_pred HHHHHHHhhhhccccchHH
Q psy16308 54 LLVWFGVLRYLGFFKTYNV 72 (371)
Q Consensus 54 fl~wlrLLRyLrf~~~i~i 72 (371)
+++.+|++|.+|..+..+.
T Consensus 115 ~lr~~RilR~lrl~~~~~~ 133 (285)
T 3rvy_A 115 ILRVLRVLRLFRLVTAVPQ 133 (285)
T ss_dssp HHHHHGGGGGGHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554443
No 17
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=49.16 E-value=64 Score=30.63 Aligned_cols=87 Identities=10% Similarity=0.126 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHh----CCchhhhhhcCCCCCcccchhhHHHHHHHHH
Q psy16308 84 VARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALIN----GDDMFATFSIMPKKSAMLWWYLRIYLYSFIS 159 (371)
Q Consensus 84 L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~TLFsl~t----GD~~~dtf~~l~~~s~~~~vlg~iYfvSFIl 159 (371)
.....++.+.+.+++.++|..+|....+++ |+..|+--.|-.++ ||..-.+ +.+...+.+++++.+.||+
T Consensus 171 ~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~-s~~da~y~~~iTltTvGyGD~~p~t-----~~~~~~~~l~r~~~~~~il 244 (280)
T 3ukm_A 171 IVHAVLLGFVTVSCFFFIPAAVFSVLEDDW-NFLESFYFCFISLSTIGLGDYVPGE-----GYNQKFRELYKIGITCYLL 244 (280)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHSSSC-CHHHHHHHHHHHHTTCCCCSCCSSC-----SSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCC-chhhhhhheeeeeecccCCCCCCCC-----CcccccchhHHHHHHHHHH
Confidence 344444555666677778888875432233 44455443333322 4532211 1111112467888777777
Q ss_pred HHHHHHHHHHHHHHHhHH
Q psy16308 160 LYIYVILSLFISVIMDAY 177 (371)
Q Consensus 160 L~ifIILNmFIAII~daY 177 (371)
+... ++-+.++.+.+..
T Consensus 245 ~Gl~-~~~~~~~~i~~~~ 261 (280)
T 3ukm_A 245 LGLI-AMLVVLETFCELH 261 (280)
T ss_dssp HHHH-HHHHHHHHHHTSH
T ss_pred HHHH-HHHHHHHHHHHHH
Confidence 6443 3444444444433
No 18
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=46.94 E-value=1.9e+02 Score=27.33 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=50.4
Q ss_pred HHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHhcC--cccCCCCHHHHHHHHHHHHh----CCchhhhhhcCCCCCccc
Q psy16308 74 ILTLKKAFPKVARFLLCA-VLIYAGFTFCGWLVLGP--YHMKFRSLSTTSECLFALIN----GDDMFATFSIMPKKSAML 146 (371)
Q Consensus 74 i~TL~~Sip~L~~Flvl~-~lIffgFAilG~~lFG~--~~~nF~Tf~~S~~TLFsl~t----GD~~~dtf~~l~~~s~~~ 146 (371)
..++..+.+.++.+++++ +++.++||.+ +.+-+. ....+.++..|+.--+..++ ||. .+.+
T Consensus 39 ~~~l~~~~~~ll~~~~~~~~~~~l~fa~l-y~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi--------~P~t--- 106 (301)
T 1xl4_A 39 HDLLTVSWPVFITLITGLYLVTNALFALA-YLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL--------IPIG--- 106 (301)
T ss_dssp THHHHSCHHHHHHHHHHHHHHHHHHHHHH-HHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSS--------CCCH---
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHhhccccCCCCcCCHHHHHHHhhhheeccCCCCC--------cCCC---
Confidence 344556666655444433 4445777777 555542 12358888888764444333 332 1122
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy16308 147 WWYLRIYLYSFISLYIYVILSLFISVIMDAYE 178 (371)
Q Consensus 147 ~vlg~iYfvSFIlL~ifIILNmFIAII~daYe 178 (371)
..|+++....++ +-.+++-+.++++...+.
T Consensus 107 -~~gr~~~~~~~l-~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 107 -PLANTLVTLEAL-CGMLGLAVAASLIYARFT 136 (301)
T ss_dssp -HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 466666644444 455566777788776554
No 19
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=44.52 E-value=1.3e+02 Score=24.61 Aligned_cols=57 Identities=7% Similarity=-0.021 Sum_probs=34.6
Q ss_pred cCCCCHHHHHHHHHHHHh----CCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16308 111 MKFRSLSTTSECLFALIN----GDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI 180 (371)
Q Consensus 111 ~nF~Tf~~S~~TLFsl~t----GD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeev 180 (371)
..+.++..|+--.+..++ ||. .+.+ ..++++.+.++++ -..++-++++.+.+.+.+.
T Consensus 36 ~~~~~~~~a~yf~~~T~tTvGyGd~--------~P~t----~~~r~~~~~~~~~-G~~~~~~~~~~i~~~~~~~ 96 (139)
T 3eff_K 36 AQLITYPRALWWSVETATTVGYGDL--------YPVT----LWGRLVAVVVMVA-GITSFGLVTAALATWFVGR 96 (139)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCCSSS--------CCCS----SHHHHHHHHHHHH-HHHHHHHHHHHHTTTTTHH
T ss_pred cccCCHHHHHHHHheeeecccCCCC--------cCCC----cCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 357888888765555543 342 1222 4677777666554 4566777777777666443
No 20
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=42.84 E-value=11 Score=32.24 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhhccccchHHHHHHHHHhhH
Q psy16308 52 GNLLVWFGVLRYLGFFKTYNVVILTLKKAFP 82 (371)
Q Consensus 52 ~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip 82 (371)
..+++.+|++|++++....+.+..+++.-+.
T Consensus 112 lRllRv~Rllrl~r~~~~~~~l~~al~~f~~ 142 (147)
T 2kyh_A 112 FRLVRLLRFLRILLIISRGSKFLSAIADAAD 142 (147)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777766544
No 21
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=40.76 E-value=1.2e+02 Score=30.23 Aligned_cols=50 Identities=2% Similarity=-0.018 Sum_probs=23.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHh
Q psy16308 79 KAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALIN 128 (371)
Q Consensus 79 ~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~TLFsl~t 128 (371)
+++..+..++++++.+++.|+.+.+.+.+.....-.++..|+.--+..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~t 64 (565)
T 4gx0_A 15 QNLKVLLLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMT 64 (565)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeee
Confidence 34444555555555566666655444332111122356666554444333
No 22
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=22.18 E-value=54 Score=28.86 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=10.1
Q ss_pred HHHHHhhhhccccchHHH
Q psy16308 56 VWFGVLRYLGFFKTYNVV 73 (371)
Q Consensus 56 ~wlrLLRyLrf~~~i~iL 73 (371)
+.+|++|.+|..+..+.+
T Consensus 102 r~~RilR~lrl~~~~~~l 119 (229)
T 4dxw_A 102 RLLRIFRVLRLISVIPEL 119 (229)
T ss_dssp TTHHHHHHTTHHHHCHHH
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 555666666666555443
Done!