RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16308
         (371 letters)



>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
           central and FMN domains {Azospirillum brasilense [TaxId:
           192]}
          Length = 771

 Score = 30.3 bits (68), Expect = 0.44
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 164 VILSLFISVIMDAYETIKQY--YINGFPKSDVIKFMG--------EIQEDETNHDFWSSI 213
           VI +L  +V  D+Y T K+Y   +N  P   +   +          + E E+        
Sbjct: 372 VIHTLQQAVTNDSYTTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKRF 431

Query: 214 ETASFSFREQIHKMHKSIALAT 235
            T   S      + H ++ +A 
Sbjct: 432 ITPGMSMGALSPEAHGTLNVAM 453


>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 103

 Score = 27.5 bits (61), Expect = 1.0
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 111 MKFRSLSTTSECLFALINGDDMFATFSIMPKKSA 144
           M   +L T+      L  G+D+F       KK A
Sbjct: 1   MNVLALDTSQRIRIGLRKGEDLFEISYTGEKKHA 34


>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 381

 Score = 26.9 bits (59), Expect = 3.8
 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)

Query: 2   EGRLEFLNLWYVMIIANDVLLILGSSIKEQIER 34
            G+LEF+   +VM    D       ++  Q+  
Sbjct: 125 NGQLEFVTGGWVM---PDEANSHWRNVLLQLTE 154


>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp.
           [TaxId: 2243]}
          Length = 236

 Score = 26.5 bits (58), Expect = 5.0
 Identities = 20/150 (13%), Positives = 45/150 (30%), Gaps = 8/150 (5%)

Query: 37  FIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNV----VILTLKKAFPKVARFLLCAV 92
            +     L  V +G+  L +++   RY  +  T  +    + L  K     +   +    
Sbjct: 65  SMFFGIGLTEVQVGSEMLDIYY--ARYADWLFTTPLLLLDLALLAKVDRVSIGTLVGVDA 122

Query: 93  LIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRI 152
           L+                  +   ST    +        + A       + A  +  L  
Sbjct: 123 LMIVTGLVGALSHTPLARYTWWLFSTICMIVVLYFLATSLRAAAKERGPEVASTFNTLTA 182

Query: 153 YLYSFISLY--IYVILSLFISVIMDAYETI 180
            +    + Y  +++I +    V+    ET+
Sbjct: 183 LVLVLWTAYPILWIIGTEGAGVVGLGIETL 212


>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 330

 Score = 26.2 bits (57), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 2   EGRLEFLNLWYVMIIANDVLLILGSSIKEQIER 34
           +GRLEF N  +VM   ND       +I +Q+  
Sbjct: 95  QGRLEFANGGWVM---NDEATTHYGAIIDQMTL 124


>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit
           {Methylococcus capsulatus [TaxId: 414]}
          Length = 512

 Score = 26.4 bits (58), Expect = 7.0
 Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 22/106 (20%)

Query: 220 FREQIHKMHKSIALATRADREANGKRRPHLNTRKGEEEEE---NRKFPDYNLSYRVILVL 276
            ++  +  H  + L   A                 ++EE       +P +   Y      
Sbjct: 321 AKQDAYWAHHDLYLLAYALWPTGF-----FRLALPDQEEMEWFEANYPGWYDHYG----- 370

Query: 277 NQSTITRSERPFVKKKKRLLGGKSPKTGLRTWEYRKRPPEVLCDVC 322
                    + + + + R     S       W      P  +  V 
Sbjct: 371 ---------KIYEEWRARGCEDPSSGFIPLMWFIENNHPIYIDRVS 407


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,419,850
Number of extensions: 66398
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 13
Length of query: 371
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,213,086
Effective search space: 344516424
Effective search space used: 344516424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.0 bits)