Query psy16309
Match_columns 271
No_of_seqs 109 out of 129
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:01:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4guc_A Protein BA_2500; virule 14.6 1.1E+02 0.0039 24.8 3.0 21 150-171 39-59 (120)
2 1p22_C Beta-catenin, Pro2286; 13.7 45 0.0016 20.5 0.3 7 1-7 6-12 (26)
3 4dbg_A Ranbp-type and C3HC4-ty 11.2 2.2E+02 0.0076 22.1 3.7 36 145-180 14-53 (105)
4 1nqj_A Class 1 collagenase; be 10.6 1.6E+02 0.0055 23.3 2.7 38 117-173 22-60 (119)
5 1o7d_A Lysosomal alpha-mannosi 7.8 74 0.0025 28.8 -0.4 14 243-256 96-109 (298)
6 1cnt_1 CNTF, ciliary neurotrop 7.5 2.6E+02 0.009 24.3 3.0 21 213-233 16-36 (187)
7 3h0x_A 78 kDa glucose-regulate 7.3 2.5E+02 0.0086 22.5 2.7 22 6-27 79-100 (152)
8 3dqg_A Heat shock 70 kDa prote 7.2 2.6E+02 0.0088 22.6 2.7 22 6-27 79-100 (151)
9 2op6_A Heat shock 70 kDa prote 6.9 2.5E+02 0.0086 22.1 2.4 22 6-27 79-100 (152)
10 3dob_A Heat shock 70 kDa prote 6.7 2.6E+02 0.0088 22.6 2.4 22 6-27 79-100 (152)
No 1
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=14.60 E-value=1.1e+02 Score=24.82 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=17.0
Q ss_pred EEEEEEEEeCCCCCeeEEEEEe
Q psy16309 150 QFDITINLDNSDMDGQVLISLD 171 (271)
Q Consensus 150 ~F~ItI~FDNkaHSGqIkI~Ld 171 (271)
+|+|+|-+ ...+.|.|||+==
T Consensus 39 tf~it~~~-~~~d~g~~KIyrv 59 (120)
T 4guc_A 39 TFDVTIYT-GGKDTGIVKIYQL 59 (120)
T ss_dssp EEEEEEEC-CSSBCCEEEEEEE
T ss_pred EEEEEEEc-CCCccceEEEEEE
Confidence 48999844 8999999999743
No 2
>1p22_C Beta-catenin, Pro2286; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} PDB: 2g57_A*
Probab=13.71 E-value=45 Score=20.47 Aligned_cols=7 Identities=43% Similarity=1.151 Sum_probs=6.1
Q ss_pred CCCCCCC
Q psy16309 1 MWSQSGY 7 (271)
Q Consensus 1 ~~~~~~~ 7 (271)
||.|.||
T Consensus 6 ~Wqq~~y 12 (26)
T 1p22_C 6 HWQQQSY 12 (26)
T ss_pred hhhhcCc
Confidence 7988888
No 3
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=11.22 E-value=2.2e+02 Score=22.07 Aligned_cols=36 Identities=8% Similarity=0.246 Sum_probs=25.2
Q ss_pred CCceEE---EEEEEEEeCCC-CCeeEEEEEeccccccccc
Q psy16309 145 PPDCYQ---FDITINLDNSD-MDGQVLISLDTEPTRLACK 180 (271)
Q Consensus 145 ~PDCY~---F~ItI~FDNka-HSGqIkI~Ld~e~~i~eCk 180 (271)
.|.||. +.+.|++.... |.+.+.+.++...++..=|
T Consensus 14 ~~~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK 53 (105)
T 4dbg_A 14 KPEVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLK 53 (105)
T ss_dssp ------CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHH
T ss_pred cCCcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHH
Confidence 468886 89999998876 7789999999888877665
No 4
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=10.61 E-value=1.6e+02 Score=23.34 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=23.7
Q ss_pred ceee-ceeeeeEEEEEEeeeeeecCCCCCCCceEEEEEEEEEeCCCCCeeEEEEEecc
Q psy16309 117 GIEF-SRFVKAELKISLKTVNFKAAGPISPPDCYQFDITINLDNSDMDGQVLISLDTE 173 (271)
Q Consensus 117 tl~F-~rLI~vtI~F~LKtInLqti~~~e~PDCY~F~ItI~FDNkaHSGqIkI~Ld~e 173 (271)
.|.| ...++-.|+ ..+.-|.|+|+|+ ..|+|.|+|+.+
T Consensus 22 ~l~~~n~~v~G~l~------------~~D~~D~y~f~v~-------~~g~v~I~l~~~ 60 (119)
T 1nqj_A 22 VIPNFNTTMQGSLL------------GDDSRDYYSFEVK-------EEGEVNIELDKK 60 (119)
T ss_dssp ECCSSSCCEEEEEC------------TTCCEEEEEEEES-------SCEEEEEEEEES
T ss_pred eeccCCeEEEEEeC------------CCCCcEEEEEECC-------CCCeEEEEEEeC
Confidence 4666 677776662 3456699999864 445555555444
No 5
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1
Probab=7.82 E-value=74 Score=28.77 Aligned_cols=14 Identities=43% Similarity=0.479 Sum_probs=12.5
Q ss_pred ccccccccceEEEe
Q psy16309 243 EGRLEFLNLWYDAV 256 (271)
Q Consensus 243 sdrlEFvNgWYILI 256 (271)
++|+||++|||++-
T Consensus 96 ~Grle~vgG~wve~ 109 (298)
T 1o7d_A 96 QGRLEFANGGWVMN 109 (298)
T ss_dssp TTSEEESSCSSSCB
T ss_pred CCCEEEECceeecc
Confidence 78999999999873
No 6
>1cnt_1 CNTF, ciliary neurotrophic factor; cytokine, growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=7.50 E-value=2.6e+02 Score=24.26 Aligned_cols=21 Identities=29% Similarity=0.733 Sum_probs=18.4
Q ss_pred hhhhhHHHHHhhhHHHHHHhH
Q psy16309 213 LCTRAIWRAQLLKYETINFFQ 233 (271)
Q Consensus 213 LC~RSIirg~~L~ke~~~FF~ 233 (271)
+|.||++.|-++|++++...+
T Consensus 16 ~csrs~~LAr~~~k~tt~LLe 36 (187)
T 1cnt_1 16 LCSRSIWLARKIRSDLTALTE 36 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhHHHHHH
Confidence 799999999999999987543
No 7
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=7.31 E-value=2.5e+02 Score=22.52 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=17.4
Q ss_pred CCCCCcceeEEccCceEEEEEE
Q psy16309 6 GYDTNELDFRVSANGIFHFQVQ 27 (271)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (271)
|-..=++.|++.+|||+|....
T Consensus 79 G~~~I~Vtf~iD~nGiL~V~a~ 100 (152)
T 3h0x_A 79 GVPQIEVTFALDANGILKVSAT 100 (152)
T ss_dssp TCSCEEEEEEECTTSEEEEEEE
T ss_pred CCceEEEEEEEcCCCEEEEEEE
Confidence 4444578999999999998764
No 8
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=7.22 E-value=2.6e+02 Score=22.55 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=17.3
Q ss_pred CCCCCcceeEEccCceEEEEEE
Q psy16309 6 GYDTNELDFRVSANGIFHFQVQ 27 (271)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (271)
|-..=++.|++.+|||.|....
T Consensus 79 G~~~IeVtf~iD~nGiL~Vsa~ 100 (151)
T 3dqg_A 79 GVPQVEVTFDIDANGIVNVSAR 100 (151)
T ss_dssp TCSCEEEEEEECTTSEEEEEEE
T ss_pred CCcEEEEEEEeccCcEEEEEEE
Confidence 4444678999999999998664
No 9
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=6.86 E-value=2.5e+02 Score=22.13 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=17.0
Q ss_pred CCCCCcceeEEccCceEEEEEE
Q psy16309 6 GYDTNELDFRVSANGIFHFQVQ 27 (271)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (271)
|-..=++.|++.+|||.|....
T Consensus 79 G~~~I~V~f~id~nGiL~V~a~ 100 (152)
T 2op6_A 79 GVPQIEVTFEIDVNGILHVSAE 100 (152)
T ss_dssp TCSCEEEEEEECTTSCEEEEEE
T ss_pred CCceEEEEEEECCCcEEEEEEE
Confidence 4344578999999999997653
No 10
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=6.68 E-value=2.6e+02 Score=22.57 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=17.2
Q ss_pred CCCCCcceeEEccCceEEEEEE
Q psy16309 6 GYDTNELDFRVSANGIFHFQVQ 27 (271)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (271)
|-..=++.|++.+|||+|....
T Consensus 79 G~~~IeVtf~iD~nGiL~Vsa~ 100 (152)
T 3dob_A 79 GVPQIEVTFNIDANGILNVSAE 100 (152)
T ss_dssp TCCCEEEEEEECTTCCEEEEEE
T ss_pred CCceEEEEEEeCCCCeEEEEEE
Confidence 4444578999999999997664
Done!