RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16309
(271 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 6e-06
Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 48/173 (27%)
Query: 16 VSANGIFHFQVQYFVITCRSLLKLISLS-SELNELL---LQCSHG---PLNIELSL-WWH 67
+S I Q+ ++V+T + L + EL L S G + I + W
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLL----GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 68 FLKVGSEFLTN-------AQRKFCTHFDFPPS-------------SPDLRMRARTKGYDS 107
F + +T + + PPS SP L + +
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYP-NTSLPPSILEDSLENNEGVPSPMLSIS----NL-T 345
Query: 108 KTELEKVGMGIE-FSRFVKAELKISLKTVN----FKAAGPISPPDCYQFDITI 155
+ +++ + + + A ++ + VN +GP P Y ++T+
Sbjct: 346 QEQVQDY---VNKTNSHLPAGKQVEISLVNGAKNLVVSGP--PQSLYGLNLTL 393
Score = 36.2 bits (83), Expect = 0.013
Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 42/142 (29%)
Query: 113 KVGMGIEF-SRFVKAELKISLKTVNFKAAGPISPPDCYQFDIT-INLDN--------SDM 162
+ GMG++ A + V + A D Y F I I ++N
Sbjct: 1628 EQGMGMDLYKTSKAA------QDV-WNRADN-HFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 163 DGQVL----ISLDTEPT---RLACKGDVKYYDNNRLDFILRS---LLNLLVITVCCTSF- 211
G+ + ++ E +L + K + + + RS LL+ T F
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA-------TQFT 1732
Query: 212 ---ILCT-RAIWRAQLLKYETI 229
+ +A + LK + +
Sbjct: 1733 QPALTLMEKAAFE--DLKSKGL 1752
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.45
Identities = 42/285 (14%), Positives = 85/285 (29%), Gaps = 89/285 (31%)
Query: 13 DFRVSANGIFHFQVQYFVIT---CRS----LLKLISLSSELNELLLQCSHGPLNIELSLW 65
++V F++ F + C S L L L +++ S NI+L +
Sbjct: 173 SYKVQCK--MDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI- 227
Query: 66 WHFLKVG-SEFLTNAQRKFC-------------THFDFPPSSPDL---RMRARTKGYDSK 108
H ++ L + + C F+ S L R + T +
Sbjct: 228 -HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAA 284
Query: 109 TE----LEKVGMGIEFSRFVKAE-LKISLKTVNFKA------AGPISPPDCYQFDITINL 157
T L+ M E + LK ++ + +P +++
Sbjct: 285 TTTHISLDHHSMT-----LTPDEVKSLLLKYLDCRPQDLPREVLTTNP-------RRLSI 332
Query: 158 DNSDMDGQVLI--SLDTEPTRLACKGDVKYYDNNRLDFILRSLLNLL------------V 203
I S+ + K+ + ++L I+ S LN+L
Sbjct: 333 ----------IAESIRDGLATW---DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 204 I---TVCCTSFILCTRAIWRAQLLKYETINFFQEKFNKKLSMEGR 245
+ + + +L IW + + K +K +E +
Sbjct: 380 VFPPSAHIPTILLSL--IWFD--VIKSDVMVVVNKLHKYSLVEKQ 420
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 29.1 bits (66), Expect = 1.5
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 221 AQLLKYETINFFQEKFNKKLSMEG 244
+ + QE+FN L M G
Sbjct: 195 QNYIS--YLIDLQEQFNPGLDMIG 216
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.9
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 5/25 (20%)
Query: 76 LTNAQRKFCTHFDFPPSSPDLRMRA 100
L + + + S+P L ++A
Sbjct: 25 LQASLKLYA-----DDSAPALAIKA 44
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM
barrel, binuclear zinc, protein structure initiative II
(PSI II); 1.80A {Rhodobacter sphaeroides 2}
Length = 364
Score = 28.5 bits (63), Expect = 2.2
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 13/93 (13%)
Query: 110 ELEKVGMGIEFSRFVKAELKISLKTVNFKAAGPISPPDCYQFDITINLDNSDMDGQVLIS 169
L + G +EF + G P D + L + ++L+S
Sbjct: 251 TLAQRGAFLEFDMIGM--------DFFYADQGVQCPSDDEVARAILGLADHGYLDRILLS 302
Query: 170 LDTEPTRLACKGDVKYYDNNRLDFILRSLLNLL 202
D K + Y N F+ + L L
Sbjct: 303 HDV-----FVKMMLTRYGGNGYAFVTKHFLPRL 330
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 2.9
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 8/43 (18%)
Query: 143 ISPPDCYQFDITINLDNSDMDGQVLISLDTEPTRLACKGDVKY 185
I P N DN D + P++ V+
Sbjct: 1405 IIPG-------NRNADNVDKILEQF-EYVLYPSKTLKTDGVRA 1439
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 26.7 bits (59), Expect = 9.2
Identities = 2/34 (5%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 143 ISPPDCYQFDITINLDNSDMDGQVLISLD-TEPT 175
+ +++ + G +++ E
Sbjct: 21 VCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDN 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.435
Gapped
Lambda K H
0.267 0.0527 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,105,065
Number of extensions: 226115
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 10
Length of query: 271
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,133,061
Effective search space: 739817919
Effective search space used: 739817919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.8 bits)