RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1631
(77 letters)
>gnl|CDD|234040 TIGR02867, spore_II_P, stage II sporulation protein P. Stage II
sporulation protein P is a protein of the endospore
formation program in a number of lineages in the
Firmicutes (low-GC Gram-positive bacteria). It is
expressed in the mother cell compartment, under control
of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is
one of three major proteins involved in engulfment of
the forespore by the mother cell. This protein family
is named for the single member in Bacillus subtilis,
although most sporulating bacteria have two members
[Cellular processes, Sporulation and germination].
Length = 196
Score = 30.0 bits (68), Expect = 0.062
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 39 AYHMSRSIHLVVDLLSEIKDAKTLMDI 65
+Y SR V L E KD K ++D+
Sbjct: 65 SYDRSRET--VKKALKENKDLKYIIDL 89
>gnl|CDD|217037 pfam02443, Circo_capsid, Circovirus capsid protein. Circoviruses
are small circular single stranded viruses. This family
is the capsid protein from viruses such as porcine
circovirus and beak and feather disease virus. These
proteins are about 220 amino acids long.
Length = 237
Score = 26.6 bits (59), Expect = 1.0
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 10 PQSCLTSVVHFGLGL-WRTPIADLD 33
P S T V H+GL + P +D
Sbjct: 197 PNSSGTKVKHYGLAFSFPQPPTAID 221
>gnl|CDD|226226 COG3703, ChaC, Uncharacterized protein involved in cation
transport [Inorganic ion transport and metabolism].
Length = 190
Score = 26.2 bits (58), Expect = 1.4
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 5 LDTYHPQSCLTSVVHFGLGLWRTP--IADLDRPGS 37
L YH CL S H G P + LDR GS
Sbjct: 36 LHGYHRSFCLRSTDHR--GTAEQPGLVLGLDRGGS 68
>gnl|CDD|219415 pfam07454, SpoIIP, Stage II sporulation protein P (SpoIIP). This
family contains the bacterial stage II sporulation
protein P (SpoIIP) (approximately 350 residues long). It
has been shown that a block in polar cytokinesis in
Bacillus subtilis is mediated partly by transcription of
spoIID, spoIIM and spoIIP. This inhibition of polar
division is involved in the locking in of asymmetry
after the formation of a polar septum during
sporulation. Engulfment in Bacillus subtilis is mediated
by two complementary systems: the first includes the
proteins SpoIID, SpoIIM and SpoIIP (DMP) which carry out
the engulfment, and the second includes the
SpoIIQ-SpoIIIAGH (Q-AH) zipper, that recruits other
proteins to the septum in a second-phase of the
engulfment. The course of events follows as the
incorporation firstly of SpoIIB into the septum during
division to serve directly or indirectly as a landmark
for localising SpoIIM and then SpoIIP and SpoIID to the
septum. SpoIIP and SpoIID interact together to form part
of the DMP complex. SpoIIP itself has been identified as
an autolysin with peptidoglycan hydrolase activity.
Length = 258
Score = 26.1 bits (58), Expect = 1.7
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 39 AYHMSRSIHLVVDLLSEIKDAKTLMDI 65
+Y SR V LL E D K ++DI
Sbjct: 132 SYKRSRET--VKKLLKENPDIKAVIDI 156
>gnl|CDD|216660 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic
domain. This is a family of vitamin-B12 independent
methionine synthases or
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferases, EC:2.1.1.14 from bacteria and
plants. Plants are the only higher eukaryotes that have
the required enzymes for methionine synthesis. This
enzyme catalyzes the last step in the production of
methionine by transferring a methyl group from
5-methyltetrahydrofolate to homocysteine. The aligned
region makes up the carboxy region of the approximately
750 amino acid protein except in some hypothetical
archaeal proteins present in the family, where this
region corresponds to the entire length. This domain
contains the catalytic residues of the enzyme.
Length = 324
Score = 25.8 bits (57), Expect = 2.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 54 SEIKDAKTLMDIAVALKDEPEA 75
+ M IA+AL+DE +
Sbjct: 141 DDQDREAQAMQIALALRDEVKD 162
>gnl|CDD|178283 PLN02679, PLN02679, hydrolase, alpha/beta fold family protein.
Length = 360
Score = 24.8 bits (54), Expect = 6.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 33 DRPGSFAYHMSRSIHLVVDLLSEIKDAKTLM 63
D+P F+Y M L++D L E+ T++
Sbjct: 129 DKPPGFSYTMETWAELILDFLEEVVQKPTVL 159
>gnl|CDD|227142 COG4805, COG4805, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 588
Score = 24.3 bits (53), Expect = 7.7
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 21 GLGLWRTPIADLDRPGSFAYHMSRSIHLVVD 51
+G++ P G + R+ LVVD
Sbjct: 464 EMGIYEDP---YGLFGYLQAQLFRACRLVVD 491
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.406
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,913,958
Number of extensions: 300989
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 8
Length of query: 77
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 31
Effective length of database: 8,897,318
Effective search space: 275816858
Effective search space used: 275816858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)