RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1631
         (77 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 0.40
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 23/71 (32%)

Query: 10  PQSCLTSVVHF-----GLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMD 64
           P   +  + H+      LG           PG    ++  +      L++    A     
Sbjct: 239 PLIGVIQLAHYVVTAKLLGF---------TPGELRSYLKGATGHSQGLVT----A----- 280

Query: 65  IAVALKDEPEA 75
           +A+A  D  E+
Sbjct: 281 VAIAETDSWES 291


>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich
           repeat, nuclear transport; 2.8A {Saccharomyces
           cerevisiae} SCOP: d.17.4.2
          Length = 221

 Score = 27.0 bits (59), Expect = 0.52
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 4   LLDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSFAYHM--SRSIHLVVDLLSEIKDAK- 60
           LL+ Y PQS  +  V     +  + + D D+  +F Y+M  SR+I  V    S  +    
Sbjct: 32  LLNLYSPQSQFS--VSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLSI 89

Query: 61  TLMDIAVALKDEP 73
               I    K  P
Sbjct: 90  GQESINSIFKTLP 102


>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export,
           translation; 1.95A {Candida albicans} SCOP: d.17.4.2
          Length = 219

 Score = 27.1 bits (59), Expect = 0.59
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 4   LLDTYHPQSCLTSVVHFGLGLW-RTPIADLDRPGSFAYHM--SRSIHLVVDLLSEIKDAK 60
           L+  Y  +S  +  V         +  +       F Y++  SR++  V  + + +    
Sbjct: 35  LMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARMAKLS 94

Query: 61  -TLMDIAVALKDEP 73
                I  + +  P
Sbjct: 95  IGQEQIYKSFQQLP 108


>2gvk_A Heme peroxidase; PC04261D, structural genomics, joint center for
          structural G JCSG, protein structure initiative, PSI;
          HET: MSE; 1.60A {Bacteroides thetaiotaomicron} SCOP:
          d.58.4.14
          Length = 317

 Score = 26.0 bits (57), Expect = 1.1
 Identities = 7/39 (17%), Positives = 13/39 (33%)

Query: 1  MVTLLDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSFA 39
          M+  +    P    +  + FG   W     D  +P   +
Sbjct: 52 MIRSMRNRFPDMQFSCTMGFGADAWTRLFPDKGKPKELS 90


>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD;
          HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1
          d.145.1.3
          Length = 288

 Score = 25.6 bits (57), Expect = 1.3
 Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 35 PGSFAYHMSRSIHLVVDLLSEIKDAKTL---MDIAVALK 70
            +F+Y    S+  V+ +L++  DA+ +     +   L 
Sbjct: 3  FPAFSYRAPASLQEVIQVLADDPDARIIAGGQSLLPLLA 41


>3b9o_A Alkane monoxygenase; LADA, alkane hydroxylase, monooxygenase,
          plasmid, oxidoreductase; HET: FMN; 1.90A {Geobacillus
          thermodenitrificans} PDB: 3b9n_A*
          Length = 440

 Score = 25.3 bits (56), Expect = 2.5
 Identities = 9/26 (34%), Positives = 9/26 (34%)

Query: 16 SVVHFGLGLWRTPIADLDRPGSFAYH 41
           V H   GLWR P     R     Y 
Sbjct: 14 CVGHIAHGLWRHPENQRHRYTDLNYW 39


>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase;
          HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava}
          SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
          Length = 287

 Score = 24.1 bits (53), Expect = 5.3
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 35 PGSFAYHMSRSIHLVVDLLSEIK-DAKTL---MDIAVALK 70
          P  F YH  +S+   V LL ++  DAK L     +   +K
Sbjct: 3  PPRFEYHAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMK 42


>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum,
          molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
          {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3
          PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
          Length = 288

 Score = 24.1 bits (53), Expect = 5.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 35 PGSFAYHMSRSIHLVVDLLSEIK-DAKTL---MDIAVALK 70
          PGSF YH  +SI   V LL+++  DA+ L     +   +K
Sbjct: 3  PGSFDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMK 42


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,196,743
Number of extensions: 58674
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 11
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)