RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1631
         (77 letters)



>d1q40b_ d.17.4.2 (B:) NTF2-like domain of mRNA export factor
          MEX67 {Yeast (Candida albicans) [TaxId: 5476]}
          Length = 205

 Score = 29.2 bits (65), Expect = 0.032
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 4/75 (5%)

Query: 3  TLLDTYHPQSCLTSVVHFGLGLW-RTPIADLDRPGSFAYHM--SRSIHLVVDLLSEIKDA 59
           L+  Y  +S  +  V         +  +       F Y++  SR++  V  + + +   
Sbjct: 22 ELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARMAKL 81

Query: 60 K-TLMDIAVALKDEP 73
                I  + +  P
Sbjct: 82 SIGQEQIYKSFQQLP 96


>d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor MEX67
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 221

 Score = 25.7 bits (56), Expect = 0.50
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 3   TLLDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSFAYHM--SRSIHLVVDLLSEIKDAK 60
            LL+ Y PQS  +  V   +    + + D D+  +F Y+M  SR+I  V    S  +   
Sbjct: 31  QLLNLYSPQSQFSVSVDSTIP--PSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLS 88

Query: 61  -TLMDIAVALKDEP 73
                I    K  P
Sbjct: 89  IGQESINSIFKTLP 102


>d1jkgb_ d.17.4.2 (B:) NTF2-like domain of Tip associating protein,
           TAP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 186

 Score = 25.6 bits (56), Expect = 0.58
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 4   LLDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSFAYHM-SRSIHLVVDLLSEIKDAK-T 61
           LLD YH  +C +  + F          +  R     Y   SR++  + D     +  K T
Sbjct: 37  LLDAYHDGACCSLSIPFI-------PQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHT 89

Query: 62  LMDIAVALKDEP 73
            +++   L + P
Sbjct: 90  RLNVVAFLNELP 101


>d2gvka1 d.58.4.14 (A:8-316) Hypothetical protein BT1219
          {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 309

 Score = 24.5 bits (53), Expect = 1.4
 Identities = 6/34 (17%), Positives = 10/34 (29%)

Query: 5  LDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSF 38
          +    P    +  + FG   W     D  +P   
Sbjct: 48 MRNRFPDMQFSCTMGFGADAWTRLFPDKGKPKEL 81


>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3,
          {Spinach (Spinacia oleracea) [TaxId: 3562]}
          Length = 112

 Score = 24.0 bits (52), Expect = 1.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 49 VVDLLSEIKDAKTLMDIAVALKDEPEAEK 77
          + +L S++  +   +D A  +K   EAEK
Sbjct: 67 LQELTSKLFSSIDNLDHAAKIKSPTEAEK 95


>d2iiza1 d.58.4.14 (A:5-310) Melanin biosynthesis protein TyrA
          {Shewanella oneidensis [TaxId: 70863]}
          Length = 306

 Score = 24.1 bits (52), Expect = 2.4
 Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 1/39 (2%)

Query: 1  MVTLLDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSFA 39
           +  L   +  S     V  G   W +   +  RP    
Sbjct: 42 YIYELTDQYSDSAFNGFVAIGANYWDSLYPE-SRPEMLK 79


>d2ae8a1 d.14.1.9 (A:1-84) Imidazole glycerol phosphate
          dehydratase {Staphylococcus aureus [TaxId: 1280]}
          Length = 84

 Score = 23.2 bits (50), Expect = 2.4
 Identities = 6/33 (18%), Positives = 14/33 (42%)

Query: 37 SFAYHMSRSIHLVVDLLSEIKDAKTLMDIAVAL 69
           F +H   S+++      ++ D     DI + +
Sbjct: 40 LFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVI 72


>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium
          subunit QorM {Pseudomonas putida [TaxId: 303]}
          Length = 176

 Score = 22.9 bits (48), Expect = 4.9
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 34 RPGSFAYHMSRSIHLVVDLLSEIKDAKTL 62
          +  +F+Y    S+  V+ +L++  DA+ +
Sbjct: 2  KFPAFSYRAPASLQEVIQVLADDPDARII 30


>d1lj8a4 c.2.1.6 (A:1-286) Mannitol 2-dehydrogenase {Pseudomonas
          fluorescens [TaxId: 294]}
          Length = 286

 Score = 22.7 bits (48), Expect = 5.7
 Identities = 4/17 (23%), Positives = 6/17 (35%)

Query: 7  TYHPQSCLTSVVHFGLG 23
           Y        + H G+G
Sbjct: 19 AYTLADTRQGIAHIGVG 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0611    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 282,867
Number of extensions: 10391
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 10
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)