BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16310
(1493 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|332028699|gb|EGI68731.1| ATP-dependent RNA helicase DDX24 [Acromyrmex echinatior]
Length = 743
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/527 (49%), Positives = 349/527 (66%), Gaps = 28/527 (5%)
Query: 755 VDTSNNEDMFVQMAE-WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
D +N+++ AE W +P +I+AL + F +PT IQ+ +P+A+L R+DI+GAA
Sbjct: 129 CDIDSNKNLAKINAEAWRSMGVPTAVIKALADQNFHSPTMIQTQTLPAAILGRRDILGAA 188
Query: 814 ETGSGKTLAFGIPILTGIVN-KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872
ETGSGKTLAFGIPI+ GI++ K +N + E D+ + VL E + N V
Sbjct: 189 ETGSGKTLAFGIPIIKGILDLKNQNKDQNSEKDTEESDSENIVLSEFD----NCVNIVND 244
Query: 873 TR---------NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923
+ LYALIL PTRELA+Q++NH+ A KYT +K+A V+GGM+ KQ RIL
Sbjct: 245 KKLDDCHNIPTKPLYALILTPTRELAMQIKNHLTQAAKYTDIKIAVVLGGMAAVKQERIL 304
Query: 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
NK P I++ATPGRLWE IQ G+ HL ++ I YL IDETDRM+E GHF EL ++L+++
Sbjct: 305 NKGPEIVIATPGRLWELIQEGNSHLNQIDSIRYLAIDETDRMMEKGHFQELHDLLEKMNA 364
Query: 984 TETS-QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPS--IKRLQDLLNIKSP 1038
Q RQTFVFSATLT H L + L+ KK + K+ K P ++++ LL IK+P
Sbjct: 365 DPAKMQKRQTFVFSATLTMVHDLPDYLDRKKKRYARSKICKLTPDQKLQKIIQLLKIKNP 424
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 1098
K+VDLT++ G LTE +I C D KD YLYYF+ +H GRTLVFCNSI VKRL L
Sbjct: 425 KVVDLTKESGTADNLTECRIACTIDHKDYYLYYFLKRHNGRTLVFCNSIGCVKRLATLFN 484
Query: 1099 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158
+LKC PLPLHA+M QRQRLKNL+RF+ N +L+ATDVAARGLDIP IEHVIHY VPRT+
Sbjct: 485 ILKCKPLPLHANMQQRQRLKNLERFQADENGLLIATDVAARGLDIPNIEHVIHYQVPRTA 544
Query: 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
E YIHRSGRTARA EG+T++++E E Y K+ +L + DLP FP+ + +L IK+R
Sbjct: 545 ENYIHRSGRTARAQKEGITILMMEPSEKQNYTKLCKTLGRTHDLPIFPVVDRILVTIKER 604
Query: 1219 IDLAKSIEYLESKIKK-NRPDNWLHRSGRTARANNEGLTLVLIESDE 1264
+D+A+ I+ +E K ++ N NWL ++ E + ++L E D+
Sbjct: 605 VDVARDIDKIELKCRRQNNQKNWLQKAA-------EDMEMILDEEDD 644
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 266/648 (41%), Positives = 355/648 (54%), Gaps = 126/648 (19%)
Query: 18 DGGVKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKL 77
D +++ KK K + T+VKS + +E EE + + N+ S+KK K+
Sbjct: 37 DYNLERSSKKGKIITTRVKSTKEKKSVSKRKYPKEWEETDIN-------NIEPSTKKSKI 89
Query: 78 KRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLE 137
K Q EV L K E+I+S ++ K+ ++ + S + +
Sbjct: 90 K------QAEVKRLKI----------KNEKIKS---ANFKITDQQTNSDSDNSDSDSYCD 130
Query: 138 VDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 197
+D SN + W +P +I+AL + F +PT IQ+ +P+A+L R+DI+GAAE
Sbjct: 131 ID-SNKNLAKINAEAWRSMGVPTAVIKALADQNFHSPTMIQTQTLPAAILGRRDILGAAE 189
Query: 198 TGSGKTLAFGIPILTGIVN-KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
TGSGKTLAFGIPI+ GI++ K +N + E D+ + VL E + N V
Sbjct: 190 TGSGKTLAFGIPIIKGILDLKNQNKDQNSEKDTEESDSENIVLSEFD----NCVNIVNDK 245
Query: 257 R---------NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307
+ LYALIL PTRELA+Q++NH+ A KYT +K+A V+GGM+ KQ RILN
Sbjct: 246 KLDDCHNIPTKPLYALILTPTRELAMQIKNHLTQAAKYTDIKIAVVLGGMAAVKQERILN 305
Query: 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 367
K P I++ATPGRLWE IQ G+ HL ++ I YL IDETDRM+E G
Sbjct: 306 KGPEIVIATPGRLWELIQEGNSHLNQIDSIRYLAIDETDRMMEKG--------------- 350
Query: 368 ETSQPRQTMIESGHFPELKNILDRVTMTETS-QPRQTFVFSATLT--HSLKNSLNLKKGQ 424
HF EL ++L+++ Q RQTFVFSATLT H L + L+ KK
Sbjct: 351 -------------HFQELHDLLEKMNADPAKMQKRQTFVFSATLTMVHDLPDYLDRKK-- 395
Query: 425 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484
K+ ++ KI LT
Sbjct: 396 ---KRYARS----------------KICKLT----------------------------- 407
Query: 485 LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 544
P + L + IQ LL IK+PK+VDLT++ G LTE +I C D KD YLYYF+ +H
Sbjct: 408 ---PDQKLQKIIQ-LLKIKNPKVVDLTKESGTADNLTECRIACTIDHKDYYLYYFLKRHN 463
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
GRTLVFCNSI VKRL L +LKC PLPLHA+M QRQRLKNL+RF+ N +L+ATDVA
Sbjct: 464 GRTLVFCNSIGCVKRLATLFNILKCKPLPLHANMQQRQRLKNLERFQADENGLLIATDVA 523
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
ARGLDIP IEHVIHY VPRT+E YIHRSGRTARA EG+T++++E E
Sbjct: 524 ARGLDIPNIEHVIHYQVPRTAENYIHRSGRTARAQKEGITILMMEPSE 571
Score = 96.7 bits (239), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 96/160 (60%), Gaps = 5/160 (3%)
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP-- 1237
+++ +PL+ M ++ +L F DE+ L + I +E I P
Sbjct: 485 ILKCKPLPLHANM-QQRQRLKNLERFQADENGLLIATDVAARGLDIPNIEHVIHYQVPRT 543
Query: 1238 -DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
+N++HRSGRTARA EG+T++++E E Y K+ +L + DLP FP+ + +L IK+
Sbjct: 544 AENYIHRSGRTARAQKEGITILMMEPSEKQNYTKLCKTLGRTHDLPIFPVVDRILVTIKE 603
Query: 1297 RIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDEN 1335
R+D+A+ I+ +E K ++ N NWL+KAA+DM++I+D+E+
Sbjct: 604 RVDVARDIDKIELKCRRQNNQKNWLQKAAEDMEMILDEED 643
Score = 83.6 bits (205), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 55/82 (67%), Gaps = 12/82 (14%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
ALIL PTRELA+Q++NH+ A KYT +K+A V+GGM+ KQ RILNK P I++ATPG L
Sbjct: 260 ALILTPTRELAMQIKNHLTQAAKYTDIKIAVVLGGMAAVKQERILNKGPEIVIATPGRLW 319
Query: 1415 --------SLKRIDLAKSIEYL 1428
L +ID SI YL
Sbjct: 320 ELIQEGNSHLNQID---SIRYL 338
Score = 49.7 bits (117), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 1418 RIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDENLIQPKANSRE-NALMSKALV 1475
R+D+A+ I+ +E K ++ N NWL+KAA+DM++I+D+E+ + S E A + + L
Sbjct: 604 RVDVARDIDKIELKCRRQNNQKNWLQKAAEDMEMILDEEDDDESSTESEEAAAAIKRQLK 663
Query: 1476 SKRKELQSLLGKSV 1489
+K+ +L+SLL K V
Sbjct: 664 AKQNQLRSLLLKPV 677
>gi|195028797|ref|XP_001987262.1| GH20064 [Drosophila grimshawi]
gi|193903262|gb|EDW02129.1| GH20064 [Drosophila grimshawi]
Length = 806
Score = 498 bits (1281), Expect = e-137, Method: Compositional matrix adjust.
Identities = 247/506 (48%), Positives = 342/506 (67%), Gaps = 30/506 (5%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V M++W IP +I+RAL ++G++ PT+IQ+M +P+A+ +KDI+GAAETGSGKTLAFG
Sbjct: 194 VDMSKWQGMGIPTSIMRALAEQGYEAPTQIQAMTLPAAIHGKKDILGAAETGSGKTLAFG 253
Query: 825 IPILTGIV-----------------NKLENPTEEDENDSGLEEEAEEVLEELE------E 861
IPIL+GI+ +K+E E + S E EEL+ E
Sbjct: 254 IPILSGIMELKQRNDGSGIRTRAPKHKVEATVEAEVPTSKENHELTPPPEELDYVSGASE 313
Query: 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921
E ++ ++ R LYAL+L PTRELA+QV+NH++ A KYT ++VA + GG+S KQ R
Sbjct: 314 EESDAEDYSSSGRRPLYALVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLSVAKQER 373
Query: 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 981
+L +CP I+VATPGRLWE G+ HL ++ +N+L IDETDRM+E GHF EL+ +L +
Sbjct: 374 VLRQCPEIVVATPGRLWELYAQGNKHLNKIEHVNFLCIDETDRMVEKGHFEELRMLLKVL 433
Query: 982 TM-TETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG--DPSIKRLQDLLNIK 1036
E Q RQ FVFSATLT H L + K+ +K K +K D I+ L + L I
Sbjct: 434 NAHEERKQLRQNFVFSATLTLIHDLPEHMQ-KRNLAKRPKFTKQTVDQKIESLIEELGIS 492
Query: 1037 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 1096
PKIVD+T +TLTES++LC DEKD YLYYF+ +HPGR++VFCNSI VKRL L
Sbjct: 493 QPKIVDITSSQQTAQTLTESRLLCAIDEKDYYLYYFVQRHPGRSIVFCNSIDCVKRLATL 552
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
+L+C+PLPLHA+M Q+QRLKNL+RFRD + +L+ATDVAARGLDIP +EHVIHY VPR
Sbjct: 553 FGLLECNPLPLHANMIQKQRLKNLERFRDSSTGLLIATDVAARGLDIPNVEHVIHYQVPR 612
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1216
TSE Y+HRSGRTARAN G+T++ +E E+ Y+++ +LE+ DLP FPI E L ++
Sbjct: 613 TSENYVHRSGRTARANKHGITVMFMEPGEVKSYVRLHKTLERTEDLPLFPISERFLGAVR 672
Query: 1217 KRIDLAKSIEYLESKIKKNRP-DNWL 1241
+R++LA+ ++ E K+++ + + W+
Sbjct: 673 ERVNLARELDKEELKLRRTQSEEGWM 698
Score = 428 bits (1101), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/532 (43%), Positives = 308/532 (57%), Gaps = 109/532 (20%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V M++W IP +I+RAL ++G++ PT+IQ+M +P+A+ +KDI+GAAETGSGKTLAFG
Sbjct: 194 VDMSKWQGMGIPTSIMRALAEQGYEAPTQIQAMTLPAAIHGKKDILGAAETGSGKTLAFG 253
Query: 208 IPILTGIV-----------------NKLENPTEEDENDSGLEEEAEEVLEELE------E 244
IPIL+GI+ +K+E E + S E EEL+ E
Sbjct: 254 IPILSGIMELKQRNDGSGIRTRAPKHKVEATVEAEVPTSKENHELTPPPEELDYVSGASE 313
Query: 245 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 304
E ++ ++ R LYAL+L PTRELA+QV+NH++ A KYT ++VA + GG+S KQ R
Sbjct: 314 EESDAEDYSSSGRRPLYALVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLSVAKQER 373
Query: 305 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364
+L +CP I+VATPGRLWE G+ HL ++ +N+L IDETDRM+E G
Sbjct: 374 VLRQCPEIVVATPGRLWELYAQGNKHLNKIEHVNFLCIDETDRMVEKG------------ 421
Query: 365 TMTETSQPRQTMIESGHFPELKNILDRVTM-TETSQPRQTFVFSATLT--HSLKNSLNLK 421
HF EL+ +L + E Q RQ FVFSATLT H L + +
Sbjct: 422 ----------------HFEELRMLLKVLNAHEERKQLRQNFVFSATLTLIHDLPEHMQKR 465
Query: 422 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 481
+L ++ TK + KI
Sbjct: 466 -------------------------------NLAKRPKFTKQTVDQKI------------ 482
Query: 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 541
+L EE L I PKIVD+T +TLTES++LC DEKD YLYYF+
Sbjct: 483 --------ESLIEE----LGISQPKIVDITSSQQTAQTLTESRLLCAIDEKDYYLYYFVQ 530
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
+HPGR++VFCNSI VKRL L +L+C+PLPLHA+M Q+QRLKNL+RFRD + +L+AT
Sbjct: 531 RHPGRSIVFCNSIDCVKRLATLFGLLECNPLPLHANMIQKQRLKNLERFRDSSTGLLIAT 590
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
DVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +E E+
Sbjct: 591 DVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEV 642
Score = 94.4 bits (233), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARAN G+T++ +E E+ Y+++ +LE+ DLP FPI E L +++R
Sbjct: 615 ENYVHRSGRTARANKHGITVMFMEPGEVKSYVRLHKTLERTEDLPLFPISERFLGAVRER 674
Query: 1298 IDLAKSIEYLESKIKKNRP-DNWLEKAAKDMDIIIDDEN 1335
++LA+ ++ E K+++ + + W++K A++MD+IID N
Sbjct: 675 VNLARELDKEELKLRRTQSEEGWMKKHAEEMDMIIDGYN 713
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 47/59 (79%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA+QV+NH++ A KYT ++VA + GG+S KQ R+L +CP I+VATPG L
Sbjct: 331 ALVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLSVAKQERVLRQCPEIVVATPGRL 389
>gi|307190840|gb|EFN74688.1| ATP-dependent RNA helicase DDX24 [Camponotus floridanus]
Length = 739
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/512 (49%), Positives = 345/512 (67%), Gaps = 23/512 (4%)
Query: 756 DTSNNEDM-FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 814
DT++N+++ + + W +P +II+AL + F +PT IQ+ +P+A+L R+DI+GAAE
Sbjct: 122 DTNDNKNLEKINVEAWSSMGVPTSIIKALADQNFHSPTAIQAQTLPAAILGRRDILGAAE 181
Query: 815 TGSGKTLAFGIPILTGIVN----KLENPTEEDEN---DSGLEEEAEEVLEELEEESANTT 867
TGSGKTLAFGIPI+ GI++ +LE E+ + G E E E ES N
Sbjct: 182 TGSGKTLAFGIPIIKGILHLKKQQLEMSMSEESTKHKNKGSSSEIEARENEDISESENCV 241
Query: 868 EFVKKTR---------NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK 918
V + LYALIL PTRELAIQ++NH+ A KYT +K+A V+GGM+ K
Sbjct: 242 HVVNNIKLDNCQNISIKPLYALILTPTRELAIQIKNHLTQAAKYTDIKIAVVLGGMAAVK 301
Query: 919 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 978
Q RIL+K P I++ATPGRLWE IQ G+ HL ++ I YL IDETDRM+E GHF EL ++L
Sbjct: 302 QERILSKGPEIVIATPGRLWELIQDGNSHLNQIDSIRYLAIDETDRMMEKGHFQELYDLL 361
Query: 979 DRVTMTETS-QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPS--IKRLQDLL 1033
+++ + RQTFVFSATLT H + + L KK + K+ K P ++++ LL
Sbjct: 362 EKMNANPVKLEKRQTFVFSATLTMVHDIPDYLERKKKRYARSKIYKLTPGQKLQKIIHLL 421
Query: 1034 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 1093
IK+PK+VDLT++ G+ LTE +I C D KD YLYYF+ +H GRTLVFCNSI VKRL
Sbjct: 422 KIKNPKVVDLTKESGMADNLTECRIACTIDHKDYYLYYFLKKHNGRTLVFCNSIGCVKRL 481
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
+ L ++L+C PLPLHASM QRQRLKNL+RF+ N +L+ATDVAARGLDIP IEHVIHY
Sbjct: 482 STLFSILECKPLPLHASMQQRQRLKNLERFQADENGLLIATDVAARGLDIPNIEHVIHYQ 541
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLS 1213
VPRTSE Y+HRSGRTARA EG+T++++E E Y K+ +L + DLP FP+ + +L
Sbjct: 542 VPRTSENYVHRSGRTARAEKEGITILMMEPSEKQNYSKLCKTLGRTHDLPTFPVVDRLLV 601
Query: 1214 LIKKRIDLAKSIEYLESKIKK-NRPDNWLHRS 1244
+K+R+D+A+ I+ LE K ++ N WL ++
Sbjct: 602 TVKERVDIARDIDKLELKCRRQNTQKTWLRKA 633
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 240/534 (44%), Positives = 315/534 (58%), Gaps = 102/534 (19%)
Query: 139 DTSNNEDM-FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 197
DT++N+++ + + W +P +II+AL + F +PT IQ+ +P+A+L R+DI+GAAE
Sbjct: 122 DTNDNKNLEKINVEAWSSMGVPTSIIKALADQNFHSPTAIQAQTLPAAILGRRDILGAAE 181
Query: 198 TGSGKTLAFGIPILTGIVN----KLENPTEEDEN---DSGLEEEAEEVLEELEEESANTT 250
TGSGKTLAFGIPI+ GI++ +LE E+ + G E E E ES N
Sbjct: 182 TGSGKTLAFGIPIIKGILHLKKQQLEMSMSEESTKHKNKGSSSEIEARENEDISESENCV 241
Query: 251 EFVKKTR---------NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK 301
V + LYALIL PTRELAIQ++NH+ A KYT +K+A V+GGM+ K
Sbjct: 242 HVVNNIKLDNCQNISIKPLYALILTPTRELAIQIKNHLTQAAKYTDIKIAVVLGGMAAVK 301
Query: 302 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
Q RIL+K P I++ATPGRLWE IQ G+ HL ++ I YL IDETDRM+E G
Sbjct: 302 QERILSKGPEIVIATPGRLWELIQDGNSHLNQIDSIRYLAIDETDRMMEKG--------- 352
Query: 362 DRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS-QPRQTFVFSATLT--HSLKNSL 418
HF EL ++L+++ + RQTFVFSATLT H + + L
Sbjct: 353 -------------------HFQELYDLLEKMNANPVKLEKRQTFVFSATLTMVHDIPDYL 393
Query: 419 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 478
KK K+ ++ KI LT
Sbjct: 394 ERKK-----KRYARS----------------KIYKLT----------------------- 409
Query: 479 YLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 538
PG+ L ++I LL IK+PK+VDLT++ G+ LTE +I C D KD YLYY
Sbjct: 410 ---------PGQKL-QKIIHLLKIKNPKVVDLTKESGMADNLTECRIACTIDHKDYYLYY 459
Query: 539 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598
F+ +H GRTLVFCNSI VKRL+ L ++L+C PLPLHASM QRQRLKNL+RF+ N +L
Sbjct: 460 FLKKHNGRTLVFCNSIGCVKRLSTLFSILECKPLPLHASMQQRQRLKNLERFQADENGLL 519
Query: 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+ATDVAARGLDIP IEHVIHY VPRTSE Y+HRSGRTARA EG+T++++E E
Sbjct: 520 IATDVAARGLDIPNIEHVIHYQVPRTSENYVHRSGRTARAEKEGITILMMEPSE 573
Score = 85.9 bits (211), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 82/133 (61%), Gaps = 6/133 (4%)
Query: 1284 FPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQP-NQL 1342
PI + +L L K++++++ S E + K K + E A++ + I + EN + N +
Sbjct: 192 IPIIKGILHLKKQQLEMSMSEESTKHKNKGSSS----EIEARENEDISESENCVHVVNNI 247
Query: 1343 LIFESRNLRYS-WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 1401
+ +N+ ALIL PTRELAIQ++NH+ A KYT +K+A V+GGM+ KQ RIL+
Sbjct: 248 KLDNCQNISIKPLYALILTPTRELAIQIKNHLTQAAKYTDIKIAVVLGGMAAVKQERILS 307
Query: 1402 KCPHILVATPGAL 1414
K P I++ATPG L
Sbjct: 308 KGPEIVIATPGRL 320
Score = 80.1 bits (196), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 5/148 (3%)
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP-- 1237
++E +PL+ M ++ +L F DE+ L + I +E I P
Sbjct: 487 ILECKPLPLHASM-QQRQRLKNLERFQADENGLLIATDVAARGLDIPNIEHVIHYQVPRT 545
Query: 1238 -DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
+N++HRSGRTARA EG+T++++E E Y K+ +L + DLP FP+ + +L +K+
Sbjct: 546 SENYVHRSGRTARAEKEGITILMMEPSEKQNYSKLCKTLGRTHDLPTFPVVDRLLVTVKE 605
Query: 1297 RIDLAKSIEYLESKIKK-NRPDNWLEKA 1323
R+D+A+ I+ LE K ++ N WL KA
Sbjct: 606 RVDIARDIDKLELKCRRQNTQKTWLRKA 633
>gi|322795046|gb|EFZ17894.1| hypothetical protein SINV_04950 [Solenopsis invicta]
Length = 736
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 17/505 (3%)
Query: 754 EVDTSNNEDMF-VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 812
++D+S E + + + W +P +I+AL + F +PT IQ+ +P+A+L R+DI+GA
Sbjct: 125 DMDSSKKESLAEINIGAWSSMGVPAAVIKALADQNFHSPTMIQAQTLPAAILGRRDILGA 184
Query: 813 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE--EAEEVLEELEEESANTTEFV 870
AETGSGKTLAFGIPI+ GI L+ ++ D + ++E E + E+L + N
Sbjct: 185 AETGSGKTLAFGIPIIKGI---LDLKSQNDGQNCPVKEIGETDSENEDLSQNCVNVVNNA 241
Query: 871 KKTRNK-----LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
K + YALIL PTRELA+Q++NH+ A KYT +K+A V+GGM+ KQ RILNK
Sbjct: 242 KLDDHNTPIKPFYALILTPTRELAVQIKNHLTQAAKYTDIKIAIVLGGMAAVKQERILNK 301
Query: 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT- 984
P I++ATPGRLWE I+ G+ HL ++ + YL IDETDRM+E GHF EL +IL+++
Sbjct: 302 GPEIVIATPGRLWELIEEGNSHLNQIDSVRYLAIDETDRMMEKGHFQELHDILEKMNANP 361
Query: 985 ETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSK--GDPSIKRLQDLLNIKSPKI 1040
E + RQTFVFSATLT H L + L+ KK + K+ K D ++++ LL IK+PK+
Sbjct: 362 EKRKKRQTFVFSATLTMVHDLPDYLDKKKKRYARSKICKLTSDQKLQKIIQLLKIKNPKV 421
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
VDLT++ G+ LTE +I C D KD YLYYF+ +H GRTLVFCNSI VKRL L ++L
Sbjct: 422 VDLTKQSGMADNLTECRIACTIDHKDYYLYYFLKRHNGRTLVFCNSIGCVKRLATLFSIL 481
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
+C PLPLHA+M QRQRLKNL+RF+ N +L+ATDVAARGLDIP IEHVIHY VPRT+E
Sbjct: 482 ECKPLPLHANMQQRQRLKNLERFQADENGLLIATDVAARGLDIPNIEHVIHYQVPRTAEN 541
Query: 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1220
Y+HRSGRTARA EG+T++++E E Y K+ +L + DLP FP+ + +L IK+R+D
Sbjct: 542 YVHRSGRTARAQKEGITVLIMEPSEKQNYTKLCKTLGRTHDLPVFPVIDKILITIKERVD 601
Query: 1221 LAKSIEYLESKIKK-NRPDNWLHRS 1244
+A+ I+ LE K ++ N +WL ++
Sbjct: 602 VARDIDKLELKSRRQNNQKSWLRKA 626
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/527 (43%), Positives = 310/527 (58%), Gaps = 96/527 (18%)
Query: 137 EVDTSNNEDMF-VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 195
++D+S E + + + W +P +I+AL + F +PT IQ+ +P+A+L R+DI+GA
Sbjct: 125 DMDSSKKESLAEINIGAWSSMGVPAAVIKALADQNFHSPTMIQAQTLPAAILGRRDILGA 184
Query: 196 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE--EAEEVLEELEEESANTTEFV 253
AETGSGKTLAFGIPI+ GI L+ ++ D + ++E E + E+L + N
Sbjct: 185 AETGSGKTLAFGIPIIKGI---LDLKSQNDGQNCPVKEIGETDSENEDLSQNCVNVVNNA 241
Query: 254 KKTRNK-----LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
K + YALIL PTRELA+Q++NH+ A KYT +K+A V+GGM+ KQ RILNK
Sbjct: 242 KLDDHNTPIKPFYALILTPTRELAVQIKNHLTQAAKYTDIKIAIVLGGMAAVKQERILNK 301
Query: 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
P I++ATPGRLWE I+ G+ HL ++ + YL IDETDRM+E G
Sbjct: 302 GPEIVIATPGRLWELIEEGNSHLNQIDSVRYLAIDETDRMMEKG---------------- 345
Query: 369 TSQPRQTMIESGHFPELKNILDRVTMT-ETSQPRQTFVFSATLT--HSLKNSLNLKKGQS 425
HF EL +IL+++ E + RQTFVFSATLT H L + L+ KK +
Sbjct: 346 ------------HFQELHDILEKMNANPEKRKKRQTFVFSATLTMVHDLPDYLDKKKKRY 393
Query: 426 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 485
K I K ++ K+
Sbjct: 394 ARSK------------------------------ICKLTSDQKL---------------- 407
Query: 486 QHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 545
++I LL IK+PK+VDLT++ G+ LTE +I C D KD YLYYF+ +H G
Sbjct: 408 --------QKIIQLLKIKNPKVVDLTKQSGMADNLTECRIACTIDHKDYYLYYFLKRHNG 459
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
RTLVFCNSI VKRL L ++L+C PLPLHA+M QRQRLKNL+RF+ N +L+ATDVAA
Sbjct: 460 RTLVFCNSIGCVKRLATLFSILECKPLPLHANMQQRQRLKNLERFQADENGLLIATDVAA 519
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
RGLDIP IEHVIHY VPRT+E Y+HRSGRTARA EG+TV+++E E
Sbjct: 520 RGLDIPNIEHVIHYQVPRTAENYVHRSGRTARAQKEGITVLIMEPSE 566
Score = 89.7 bits (221), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP-- 1237
++E +PL+ M ++ +L F DE+ L + I +E I P
Sbjct: 480 ILECKPLPLHANM-QQRQRLKNLERFQADENGLLIATDVAARGLDIPNIEHVIHYQVPRT 538
Query: 1238 -DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
+N++HRSGRTARA EG+T++++E E Y K+ +L + DLP FP+ + +L IK+
Sbjct: 539 AENYVHRSGRTARAQKEGITVLIMEPSEKQNYTKLCKTLGRTHDLPVFPVIDKILITIKE 598
Query: 1297 RIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIII 1331
R+D+A+ I+ LE K ++ N +WL KA +DMD+I+
Sbjct: 599 RVDVARDIDKLELKSRRQNNQKSWLRKAVEDMDMIL 634
Score = 83.2 bits (204), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 47/59 (79%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA+Q++NH+ A KYT +K+A V+GGM+ KQ RILNK P I++ATPG L
Sbjct: 255 ALILTPTRELAVQIKNHLTQAAKYTDIKIAIVLGGMAAVKQERILNKGPEIVIATPGRL 313
Score = 40.4 bits (93), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 1418 RIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKALVS 1476
R+D+A+ I+ LE K ++ N +WL KA +DMD+I+ +++ + S E A + + L
Sbjct: 599 RVDVARDIDKLELKSRRQNNQKSWLRKAVEDMDMILGEDDEDESSTESEEAAALKRQLKV 658
Query: 1477 KRKELQSLLGKSV 1489
K+ +L+SLL K V
Sbjct: 659 KKNQLRSLLSKPV 671
>gi|198458698|ref|XP_002138576.1| GA24853 [Drosophila pseudoobscura pseudoobscura]
gi|198136429|gb|EDY69134.1| GA24853 [Drosophila pseudoobscura pseudoobscura]
Length = 807
Score = 494 bits (1273), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/594 (44%), Positives = 381/594 (64%), Gaps = 34/594 (5%)
Query: 672 RAEADKEKTEDINVTVSSKKKKLK-RKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEP 730
+AE +K E + +K+ K +K+N + + SE N ++P Q QSD+
Sbjct: 121 QAERHAQKLEKLKEKRQKRKESRKLKKENIEEEDGSESDDNEDNPSGQYVLLRPPQSDD- 179
Query: 731 HSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKT 790
+ ++ S+++E+ ++ ++ E +++ W +P I+RAL ++GFK
Sbjct: 180 --------ENEEAAEPSSDEEVPQLVPASTE-YKDELSAWNGLGVPSNILRALAEQGFKA 230
Query: 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN-KLEN------------ 837
PT+IQSM +P+A+ +KDI+GAAETGSGKTLAFGIP+L GI+ K N
Sbjct: 231 PTQIQSMTLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNASSGIRKAPKVK 290
Query: 838 -----PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
P +DE++ + + + +E ++ E ++ + LY L+L PTRELA+QV
Sbjct: 291 GAPIAPPADDEHELTPPPDELDHVSGASDEDSDAEEREQRKQTPLYGLVLTPTRELAVQV 350
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+NH++ A KYT +KVA + GG+S KQ R+L +CP I+VATPGRLWE G+ HL +L
Sbjct: 351 RNHLVSAAKYTGIKVAAIFGGLSVAKQERVLRQCPEIVVATPGRLWELFAQGNQHLNKLD 410
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETS-QPRQTFVFSATLT--HSLKNSLNL 1009
+++LVIDETDRM+E GHF EL+++L + E Q RQ FVFSATLT H L + +
Sbjct: 411 DLSFLVIDETDRMVEKGHFEELRSLLKVLNADEQKKQQRQNFVFSATLTLVHDLPDHMQK 470
Query: 1010 KKGQSKSKKVSKG-DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
+ + K V + D I+ L + L I PKIVD+T +TLTES++LC D+KD Y
Sbjct: 471 RNVGKRPKFVKQTVDQKIESLIEELGISQPKIVDITSTQQTAQTLTESRLLCPIDQKDFY 530
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
LYYFI +HPGRT+VFCNSI V+RL L +L CSPLPLHA+M Q+QRLKNL+RFRD
Sbjct: 531 LYYFIQRHPGRTIVFCNSIDCVRRLATLFGLLDCSPLPLHANMIQKQRLKNLERFRDCPT 590
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+T++ +E E+
Sbjct: 591 GLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVRS 650
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
Y+K++ +LE+ DLP FPI E L+ +++R++LA+ ++ E K+K+ + + W+
Sbjct: 651 YVKLYKTLERTEDLPLFPISERFLAGVRERVNLARDLDKEELKLKRVQSERGWM 704
Score = 424 bits (1090), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/621 (40%), Positives = 349/621 (56%), Gaps = 115/621 (18%)
Query: 55 EAEADKEKTEGINVTVSSKKKKLK-RKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEP 113
+AE +K E + +K+ K +K+N + + SE N ++P Q QSD+
Sbjct: 121 QAERHAQKLEKLKEKRQKRKESRKLKKENIEEEDGSESDDNEDNPSGQYVLLRPPQSDD- 179
Query: 114 SSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKT 173
+ ++ S+++E+ ++ ++ E +++ W +P I+RAL ++GFK
Sbjct: 180 --------ENEEAAEPSSDEEVPQLVPASTE-YKDELSAWNGLGVPSNILRALAEQGFKA 230
Query: 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN-KLEN------------ 220
PT+IQSM +P+A+ +KDI+GAAETGSGKTLAFGIP+L GI+ K N
Sbjct: 231 PTQIQSMTLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNASSGIRKAPKVK 290
Query: 221 -----PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
P +DE++ + + + +E ++ E ++ + LY L+L PTRELA+QV
Sbjct: 291 GAPIAPPADDEHELTPPPDELDHVSGASDEDSDAEEREQRKQTPLYGLVLTPTRELAVQV 350
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+NH++ A KYT +KVA + GG+S KQ R+L +CP I+VATPGRLWE G+ HL +L
Sbjct: 351 RNHLVSAAKYTGIKVAAIFGGLSVAKQERVLRQCPEIVVATPGRLWELFAQGNQHLNKLD 410
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+++LVIDETDRM+E G HF EL+++L +
Sbjct: 411 DLSFLVIDETDRMVEKG----------------------------HFEELRSLLKVLNAD 442
Query: 396 ETS-QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
E Q RQ FVFSATLT H L + + +K + G K PK V
Sbjct: 443 EQKKQQRQNFVFSATLTLVHDLPDHM---------QKRNVG-------------KRPKFV 480
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
K + KI +L EE L I PKIVD+T
Sbjct: 481 ---------KQTVDQKI--------------------ESLIEE----LGISQPKIVDITS 507
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
+TLTES++LC D+KD YLYYFI +HPGRT+VFCNSI V+RL L +L CSPL
Sbjct: 508 TQQTAQTLTESRLLCPIDQKDFYLYYFIQRHPGRTIVFCNSIDCVRRLATLFGLLDCSPL 567
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EHVIHY VPRTSE Y+HRS
Sbjct: 568 PLHANMIQKQRLKNLERFRDCPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRS 627
Query: 633 GRTARANNEGLTVVLIESDEI 653
GRTARAN G+TV+ +E E+
Sbjct: 628 GRTARANKHGITVMFMEPGEV 648
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E L+ +++R
Sbjct: 621 ENYVHRSGRTARANKHGITVMFMEPGEVRSYVKLYKTLERTEDLPLFPISERFLAGVRER 680
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDEN 1335
++LA+ ++ E K+K+ + + W++K A++MD+IID N
Sbjct: 681 VNLARDLDKEELKLKRVQSERGWMKKHAEEMDMIIDGYN 719
Score = 84.7 bits (208), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+NH++ A KYT +KVA + GG+S KQ R+L +CP I+VATPG L
Sbjct: 337 GLVLTPTRELAVQVRNHLVSAAKYTGIKVAAIFGGLSVAKQERVLRQCPEIVVATPGRL 395
>gi|189239044|ref|XP_969373.2| PREDICTED: similar to CG9143 CG9143-PA [Tribolium castaneum]
Length = 645
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/483 (51%), Positives = 331/483 (68%), Gaps = 43/483 (8%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W F +P++II+AL +GF PT IQS+ +P+A+L R+DIVGAAETGSGKTLAFG+PI+
Sbjct: 103 WSNFGLPDSIIKALVLQGFNEPTLIQSLSLPAAVLGRRDIVGAAETGSGKTLAFGLPIVA 162
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
GI+N+ ++ V + KLYAL+L PTRELA
Sbjct: 163 GILNE-------------------------------KSKVVGNSDKKLYALVLTPTRELA 191
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+QV++H+ K+T + +A V+GGM+ KQ RIL+K P I+VATPGRLWE IQ G+ HL+
Sbjct: 192 VQVRDHLKAIVKFTDINIAVVLGGMAAVKQERILSKRPEIVVATPGRLWELIQQGNEHLS 251
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET-SQPRQTFVFSATLT--HSLKNS 1006
++ I YL IDETDRM+E GHF EL NIL+R+ + +T ++ RQ FVFSATLT H
Sbjct: 252 QINDIRYLAIDETDRMLEKGHFEELHNILERLNLDKTRAKQRQNFVFSATLTLVH----- 306
Query: 1007 LNLKKGQSKSKKVSKGDPS--IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
+L K + KVSK P + R+ L IK+PKIVD+++ TLTES+I C +E
Sbjct: 307 -DLPKYRFNKSKVSKMTPQQKLSRIMTDLGIKNPKIVDISQGGNTPATLTESRISCGIEE 365
Query: 1065 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
KD Y+YYF+ +HPGRTL+FCNSI V+RL LL +L C PLPLHASM QRQRLKNL+RFR
Sbjct: 366 KDYYVYYFLQKHPGRTLIFCNSIGCVRRLANLLGILGCRPLPLHASMQQRQRLKNLERFR 425
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
D + IL+ATDVAARGLDIP IEHV+HY PRTSE Y+HRSGRTARA +GLT+VL+E
Sbjct: 426 DDEHGILVATDVAARGLDIPKIEHVLHYQTPRTSESYVHRSGRTARATQQGLTVVLMEPS 485
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHR 1243
EI YIK+ +L + DLP FP+ E L +K+R++LA+ ++ LE +I+K N + WL +
Sbjct: 486 EIQNYIKICKTLNRSEDLPIFPVQEEYLKAVKQRVNLARELDKLELQIRKGNSEEGWLRK 545
Query: 1244 SGR 1246
+ +
Sbjct: 546 AAK 548
Score = 418 bits (1074), Expect = e-113, Method: Compositional matrix adjust.
Identities = 230/504 (45%), Positives = 296/504 (58%), Gaps = 122/504 (24%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W F +P++II+AL +GF PT IQS+ +P+A+L R+DIVGAAETGSGKTLAFG+PI+
Sbjct: 103 WSNFGLPDSIIKALVLQGFNEPTLIQSLSLPAAVLGRRDIVGAAETGSGKTLAFGLPIVA 162
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
GI+N+ ++ V + KLYAL+L PTRELA
Sbjct: 163 GILNE-------------------------------KSKVVGNSDKKLYALVLTPTRELA 191
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+QV++H+ K+T + +A V+GGM+ KQ RIL+K P I+VATPGRLWE IQ G+ HL+
Sbjct: 192 VQVRDHLKAIVKFTDINIAVVLGGMAAVKQERILSKRPEIVVATPGRLWELIQQGNEHLS 251
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
++ I YL IDETDRM+E G HF EL NIL+R+
Sbjct: 252 QINDIRYLAIDETDRMLEKG----------------------------HFEELHNILERL 283
Query: 393 TMTET-SQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
+ +T ++ RQ FVFSATLT H +L K + KVSK P K
Sbjct: 284 NLDKTRAKQRQNFVFSATLTLVH------DLPKYRFNKSKVSKMTPQQK----------- 326
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
+++ +T+ L IK+PKIVD
Sbjct: 327 ----------LSRIMTD---------------------------------LGIKNPKIVD 343
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
+++ TLTES+I C +EKD Y+YYF+ +HPGRTL+FCNSI V+RL LL +L C
Sbjct: 344 ISQGGNTPATLTESRISCGIEEKDYYVYYFLQKHPGRTLIFCNSIGCVRRLANLLGILGC 403
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
PLPLHASM QRQRLKNL+RFRD + IL+ATDVAARGLDIP IEHV+HY PRTSE Y+
Sbjct: 404 RPLPLHASMQQRQRLKNLERFRDDEHGILVATDVAARGLDIPKIEHVLHYQTPRTSESYV 463
Query: 630 HRSGRTARANNEGLTVVLIESDEI 653
HRSGRTARA +GLTVVL+E EI
Sbjct: 464 HRSGRTARATQQGLTVVLMEPSEI 487
Score = 103 bits (258), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 114/200 (57%), Gaps = 16/200 (8%)
Query: 1145 GIE---HVIHYHV---PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
GIE + ++Y + P + I+ + G R N L ++ +PL+ M ++
Sbjct: 362 GIEEKDYYVYYFLQKHPGRTLIFCNSIGCVRRLAN---LLGILGCRPLPLHASM-QQRQR 417
Query: 1199 KVDLPDFPIDESVL----SLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEG 1254
+L F DE + + + +D+ K IE++ ++++HRSGRTARA +G
Sbjct: 418 LKNLERFRDDEHGILVATDVAARGLDIPK-IEHVLHYQTPRTSESYVHRSGRTARATQQG 476
Query: 1255 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK- 1313
LT+VL+E EI YIK+ +L + DLP FP+ E L +K+R++LA+ ++ LE +I+K
Sbjct: 477 LTVVLMEPSEIQNYIKICKTLNRSEDLPIFPVQEEYLKAVKQRVNLARELDKLELQIRKG 536
Query: 1314 NRPDNWLEKAAKDMDIIIDD 1333
N + WL KAAK+MDII+DD
Sbjct: 537 NSEEGWLRKAAKEMDIIVDD 556
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 11/126 (8%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA+QV++H+ K+T + +A V+GGM+ KQ RIL+K P I+VATPG L
Sbjct: 181 ALVLTPTRELAVQVRDHLKAIVKFTDINIAVVLGGMAAVKQERILSKRPEIVVATPGRLW 240
Query: 1415 -----SLKRIDLAKSIEYLESKIKKNRPDNWLEKA-AKDMDIIIDDENLIQPKANSRENA 1468
+ + I YL + D LEK +++ I++ NL + +A R+N
Sbjct: 241 ELIQQGNEHLSQINDIRYLAI----DETDRMLEKGHFEELHNILERLNLDKTRAKQRQNF 296
Query: 1469 LMSKAL 1474
+ S L
Sbjct: 297 VFSATL 302
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 1417 KRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKALV 1475
+R++LA+ ++ LE +I+K N + WL KAAK+MDII+DD K +S E + K
Sbjct: 518 QRVNLARELDKLELQIRKGNSEEGWLRKAAKEMDIIVDD---FSKKFDSDEISSQKKLAD 574
Query: 1476 SKRKELQSLLGKSV 1489
KRK+L +LL K +
Sbjct: 575 VKRKQLTALLTKPI 588
>gi|270010898|gb|EFA07346.1| hypothetical protein TcasGA2_TC015943 [Tribolium castaneum]
Length = 599
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 258/524 (49%), Positives = 349/524 (66%), Gaps = 47/524 (8%)
Query: 733 KKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAE----WVKFNIPETIIRALYQKGF 788
K K+K+K + +K+ V+T + +Q ++ W F +P++II+AL +GF
Sbjct: 60 KPAKKKRKVSSVALTPSKQGSSVETRVEINEKIQKSDSYLVWSNFGLPDSIIKALVLQGF 119
Query: 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848
PT IQS+ +P+A+L R+DIVGAAETGSGKTLAFG+PI+ GI+N+
Sbjct: 120 NEPTLIQSLSLPAAVLGRRDIVGAAETGSGKTLAFGLPIVAGILNE-------------- 165
Query: 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA 908
++ V + KLYAL+L PTRELA+QV++H+ K+T + +A
Sbjct: 166 -----------------KSKVVGNSDKKLYALVLTPTRELAVQVRDHLKAIVKFTDINIA 208
Query: 909 CVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES 968
V+GGM+ KQ RIL+K P I+VATPGRLWE IQ G+ HL+++ I YL IDETDRM+E
Sbjct: 209 VVLGGMAAVKQERILSKRPEIVVATPGRLWELIQQGNEHLSQINDIRYLAIDETDRMLEK 268
Query: 969 GHFPELKNILDRVTMTET-SQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPS 1025
GHF EL NIL+R+ + +T ++ RQ FVFSATLT H +L K + KVSK P
Sbjct: 269 GHFEELHNILERLNLDKTRAKQRQNFVFSATLTLVH------DLPKYRFNKSKVSKMTPQ 322
Query: 1026 --IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 1083
+ R+ L IK+PKIVD+++ TLTES+I C +EKD Y+YYF+ +HPGRTL+F
Sbjct: 323 QKLSRIMTDLGIKNPKIVDISQGGNTPATLTESRISCGIEEKDYYVYYFLQKHPGRTLIF 382
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
CNSI V+RL LL +L C PLPLHASM QRQRLKNL+RFRD + IL+ATDVAARGLDI
Sbjct: 383 CNSIGCVRRLANLLGILGCRPLPLHASMQQRQRLKNLERFRDDEHGILVATDVAARGLDI 442
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
P IEHV+HY PRTSE Y+HRSGRTARA +GLT+VL+E EI YIK+ +L + DLP
Sbjct: 443 PKIEHVLHYQTPRTSESYVHRSGRTARATQQGLTVVLMEPSEIQNYIKICKTLNRSEDLP 502
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHRSGR 1246
FP+ E L +K+R++LA+ ++ LE +I+K N + WL ++ +
Sbjct: 503 IFPVQEEYLKAVKQRVNLARELDKLELQIRKGNSEEGWLRKAAK 546
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 238/545 (43%), Positives = 314/545 (57%), Gaps = 126/545 (23%)
Query: 116 KKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAE----WVKFNIPETIIRALYQKGF 171
K K+K+K + +K+ V+T + +Q ++ W F +P++II+AL +GF
Sbjct: 60 KPAKKKRKVSSVALTPSKQGSSVETRVEINEKIQKSDSYLVWSNFGLPDSIIKALVLQGF 119
Query: 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231
PT IQS+ +P+A+L R+DIVGAAETGSGKTLAFG+PI+ GI+N+
Sbjct: 120 NEPTLIQSLSLPAAVLGRRDIVGAAETGSGKTLAFGLPIVAGILNE-------------- 165
Query: 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA 291
++ V + KLYAL+L PTRELA+QV++H+ K+T + +A
Sbjct: 166 -----------------KSKVVGNSDKKLYALVLTPTRELAVQVRDHLKAIVKFTDINIA 208
Query: 292 CVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES 351
V+GGM+ KQ RIL+K P I+VATPGRLWE IQ G+ HL+++ I YL IDETDRM+E
Sbjct: 209 VVLGGMAAVKQERILSKRPEIVVATPGRLWELIQQGNEHLSQINDIRYLAIDETDRMLEK 268
Query: 352 GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET-SQPRQTFVFSATL 410
G HF EL NIL+R+ + +T ++ RQ FVFSATL
Sbjct: 269 G----------------------------HFEELHNILERLNLDKTRAKQRQNFVFSATL 300
Query: 411 T--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468
T H +L K + KVSK P K +++ +T+
Sbjct: 301 TLVH------DLPKYRFNKSKVSKMTPQQK---------------------LSRIMTD-- 331
Query: 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 528
L IK+PKIVD+++ TLTES+I C
Sbjct: 332 -------------------------------LGIKNPKIVDISQGGNTPATLTESRISCG 360
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
+EKD Y+YYF+ +HPGRTL+FCNSI V+RL LL +L C PLPLHASM QRQRLKNL+
Sbjct: 361 IEEKDYYVYYFLQKHPGRTLIFCNSIGCVRRLANLLGILGCRPLPLHASMQQRQRLKNLE 420
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
RFRD + IL+ATDVAARGLDIP IEHV+HY PRTSE Y+HRSGRTARA +GLTVVL+
Sbjct: 421 RFRDDEHGILVATDVAARGLDIPKIEHVLHYQTPRTSESYVHRSGRTARATQQGLTVVLM 480
Query: 649 ESDEI 653
E EI
Sbjct: 481 EPSEI 485
Score = 104 bits (259), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 114/200 (57%), Gaps = 16/200 (8%)
Query: 1145 GIE---HVIHYHV---PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
GIE + ++Y + P + I+ + G R N L ++ +PL+ M ++
Sbjct: 360 GIEEKDYYVYYFLQKHPGRTLIFCNSIGCVRRLAN---LLGILGCRPLPLHASM-QQRQR 415
Query: 1199 KVDLPDFPIDESVL----SLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEG 1254
+L F DE + + + +D+ K IE++ ++++HRSGRTARA +G
Sbjct: 416 LKNLERFRDDEHGILVATDVAARGLDIPK-IEHVLHYQTPRTSESYVHRSGRTARATQQG 474
Query: 1255 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK- 1313
LT+VL+E EI YIK+ +L + DLP FP+ E L +K+R++LA+ ++ LE +I+K
Sbjct: 475 LTVVLMEPSEIQNYIKICKTLNRSEDLPIFPVQEEYLKAVKQRVNLARELDKLELQIRKG 534
Query: 1314 NRPDNWLEKAAKDMDIIIDD 1333
N + WL KAAK+MDII+DD
Sbjct: 535 NSEEGWLRKAAKEMDIIVDD 554
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 11/126 (8%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA+QV++H+ K+T + +A V+GGM+ KQ RIL+K P I+VATPG L
Sbjct: 179 ALVLTPTRELAVQVRDHLKAIVKFTDINIAVVLGGMAAVKQERILSKRPEIVVATPGRLW 238
Query: 1415 -----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAA-KDMDIIIDDENLIQPKANSRENA 1468
+ + I YL + D LEK +++ I++ NL + +A R+N
Sbjct: 239 ELIQQGNEHLSQINDIRYLAI----DETDRMLEKGHFEELHNILERLNLDKTRAKQRQNF 294
Query: 1469 LMSKAL 1474
+ S L
Sbjct: 295 VFSATL 300
Score = 44.7 bits (104), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Query: 1417 KRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDD 1454
+R++LA+ ++ LE +I+K N + WL KAAK+MDII+DD
Sbjct: 516 QRVNLARELDKLELQIRKGNSEEGWLRKAAKEMDIIVDD 554
>gi|195154787|ref|XP_002018294.1| GL17630 [Drosophila persimilis]
gi|194114090|gb|EDW36133.1| GL17630 [Drosophila persimilis]
Length = 807
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/499 (48%), Positives = 339/499 (67%), Gaps = 23/499 (4%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
+++ W +P I+RAL ++GFK PT+IQSM +P+A+ +KDI+GAAETGSGKTLAFGI
Sbjct: 206 ELSAWNGLGVPSNILRALAEQGFKAPTQIQSMTLPAAIHGKKDILGAAETGSGKTLAFGI 265
Query: 826 PILTGIVN-KLEN-----------------PTEEDENDSGLEEEAEEVLEELEEESANTT 867
P+L GI+ K N P +DE++ + + + +E ++
Sbjct: 266 PMLAGIMELKQRNASSGIRKAPKVKGAPIAPPADDEHELTPPPDELDHVSGASDEDSDAE 325
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
E ++ + LY L+L PTRELA+QV+NH++ A KYT +KVA + GG+S KQ R+L +CP
Sbjct: 326 EREQRKQTPLYGLVLTPTRELAVQVKNHLVSAAKYTGIKVAAIFGGLSVAKQERVLRQCP 385
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
I+VATPGRLWE G+ HL +L +++LVIDETDRM+E GHF EL+++L + E
Sbjct: 386 EIVVATPGRLWELFAQGNQHLNKLDDLSFLVIDETDRMVEKGHFEELRSLLKVLNADEQK 445
Query: 988 -QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG-DPSIKRLQDLLNIKSPKIVDL 1043
Q RQ FVFSATLT H L + + + + K V + D I+ L + L I PKIVD+
Sbjct: 446 KQQRQNFVFSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIESLIEELGISQPKIVDI 505
Query: 1044 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 1103
T +TLTES++LC D+KD YLYYFI +HPGRT+VFCNSI V+RL + +L CS
Sbjct: 506 TSTQQTAQTLTESRLLCPIDQKDFYLYYFIQRHPGRTIVFCNSIDCVRRLATIFGLLDCS 565
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EHVIHY VPRTSE Y+H
Sbjct: 566 PLPLHANMIQKQRLKNLERFRDCPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVH 625
Query: 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
RSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E L+ +++R++LA+
Sbjct: 626 RSGRTARANKHGITVMFMEPGEVRSYVKLYKTLERTEDLPLFPISERFLAGVRERVNLAR 685
Query: 1224 SIEYLESKIKKNRPD-NWL 1241
++ E K+K+ + + W+
Sbjct: 686 DLDKEELKLKRVQSERGWM 704
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 232/526 (44%), Positives = 307/526 (58%), Gaps = 104/526 (19%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
+++ W +P I+RAL ++GFK PT+IQSM +P+A+ +KDI+GAAETGSGKTLAFGI
Sbjct: 206 ELSAWNGLGVPSNILRALAEQGFKAPTQIQSMTLPAAIHGKKDILGAAETGSGKTLAFGI 265
Query: 209 PILTGIVN-KLEN-----------------PTEEDENDSGLEEEAEEVLEELEEESANTT 250
P+L GI+ K N P +DE++ + + + +E ++
Sbjct: 266 PMLAGIMELKQRNASSGIRKAPKVKGAPIAPPADDEHELTPPPDELDHVSGASDEDSDAE 325
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
E ++ + LY L+L PTRELA+QV+NH++ A KYT +KVA + GG+S KQ R+L +CP
Sbjct: 326 EREQRKQTPLYGLVLTPTRELAVQVKNHLVSAAKYTGIKVAAIFGGLSVAKQERVLRQCP 385
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
I+VATPGRLWE G+ HL +L +++LVIDETDRM+E G
Sbjct: 386 EIVVATPGRLWELFAQGNQHLNKLDDLSFLVIDETDRMVEKG------------------ 427
Query: 371 QPRQTMIESGHFPELKNILDRVTMTETS-QPRQTFVFSATLT--HSLKNSLNLKKGQSKS 427
HF EL+++L + E Q RQ FVFSATLT H L + +
Sbjct: 428 ----------HFEELRSLLKVLNADEQKKQQRQNFVFSATLTLVHDLPDHM--------- 468
Query: 428 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 487
+K + G K PK V K + KI
Sbjct: 469 QKRNVG-------------KRPKFV---------KQTVDQKI------------------ 488
Query: 488 PGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547
+L EE L I PKIVD+T +TLTES++LC D+KD YLYYFI +HPGRT
Sbjct: 489 --ESLIEE----LGISQPKIVDITSTQQTAQTLTESRLLCPIDQKDFYLYYFIQRHPGRT 542
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
+VFCNSI V+RL + +L CSPLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARG
Sbjct: 543 IVFCNSIDCVRRLATIFGLLDCSPLPLHANMIQKQRLKNLERFRDCPTGLLIATDVAARG 602
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +E E+
Sbjct: 603 LDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEV 648
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E L+ +++R
Sbjct: 621 ENYVHRSGRTARANKHGITVMFMEPGEVRSYVKLYKTLERTEDLPLFPISERFLAGVRER 680
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDEN 1335
++LA+ ++ E K+K+ + + W++K A++MD+IID N
Sbjct: 681 VNLARDLDKEELKLKRVQSERGWMKKHAEEMDMIIDGYN 719
Score = 84.7 bits (208), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+NH++ A KYT +KVA + GG+S KQ R+L +CP I+VATPG L
Sbjct: 337 GLVLTPTRELAVQVKNHLVSAAKYTGIKVAAIFGGLSVAKQERVLRQCPEIVVATPGRL 395
>gi|56201305|dbj|BAD72907.1| unnamed protein product [Drosophila simulans]
gi|56201324|dbj|BAD72925.1| unnamed protein product [Drosophila sechellia]
Length = 814
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/514 (47%), Positives = 344/514 (66%), Gaps = 28/514 (5%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
EL+ + T ED+ + W +P +I+RAL ++GFKTPT+IQ++ +P+A+ +KDI+
Sbjct: 203 ELVSIPTDEAEDV----SAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDIL 258
Query: 811 GAAETGSGKTLAFGIPILTGIV------------------NKLENPTEEDENDSGLEEEA 852
GAAETGSGKTLAFGIP+L GI+ + P ++ + EE
Sbjct: 259 GAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEEL 318
Query: 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 912
+ V +EES + E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + G
Sbjct: 319 DHVSGASDEES-DAEEHTQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFG 377
Query: 913 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
G++ KQ R+L +CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E GHF
Sbjct: 378 GLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFE 437
Query: 973 ELKNILDRVTMTETSQ-PRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG-DPSIKR 1028
EL+++L + E + RQ FV+SATLT H L + + + + K V + D I+
Sbjct: 438 ELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQSVDQKIES 497
Query: 1029 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 1088
L + L I PKIVD+T +TLTES++LC D KD +LYYFI +HPGRT+VFCNSI
Sbjct: 498 LIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSID 557
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EH
Sbjct: 558 CVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEH 617
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208
VIHY VPRTSE Y+HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI
Sbjct: 618 VIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPIS 677
Query: 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
E L +++R++LA+ ++ E K+K+ + + W+
Sbjct: 678 ERFLGAVRERVNLARDLDKEELKLKRVQSERGWM 711
Score = 424 bits (1091), Expect = e-115, Method: Compositional matrix adjust.
Identities = 256/654 (39%), Positives = 353/654 (53%), Gaps = 152/654 (23%)
Query: 21 VKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRK 80
+++KR+K+K L+ + KSK K N +N+EE +E AD+ +
Sbjct: 133 LREKREKRKELRKQKKSKGKEN----DNSEESSDEHAADRFAL---------------LR 173
Query: 81 QNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDT 140
PS E E++ + D Q + EE EL+ + T
Sbjct: 174 PPPSDDEAEEVAKAEDSADQQESSDEEA------------------------PELVSIPT 209
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
ED+ + W +P +I+RAL ++GFKTPT+IQ++ +P+A+ +KDI+GAAETGS
Sbjct: 210 DEAEDV----SAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDILGAAETGS 265
Query: 201 GKTLAFGIPILTGIV------------------NKLENPTEEDENDSGLEEEAEEVLEEL 242
GKTLAFGIP+L GI+ + P ++ + EE + V
Sbjct: 266 GKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEELDHVSGAS 325
Query: 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ 302
+EES + E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ
Sbjct: 326 DEES-DAEEHTQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQ 384
Query: 303 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 362
R+L +CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E G
Sbjct: 385 ERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKG---------- 434
Query: 363 RVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ-PRQTFVFSATLT--HSLKNSLN 419
HF EL+++L + E + RQ FV+SATLT H L + +
Sbjct: 435 ------------------HFEELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHM- 475
Query: 420 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 479
+K + G K PK V K + KI
Sbjct: 476 --------QKRNVG-------------KRPKFV---------KQSVDQKI---------- 495
Query: 480 LYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 539
+L EE L I PKIVD+T +TLTES++LC D KD +LYYF
Sbjct: 496 ----------ESLIEE----LGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYF 541
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
I +HPGRT+VFCNSI VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+
Sbjct: 542 IQRHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLI 601
Query: 600 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
ATDVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +E E+
Sbjct: 602 ATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEV 655
Score = 96.7 bits (239), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E L +++R
Sbjct: 628 ENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPISERFLGAVRER 687
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDEN 1335
++LA+ ++ E K+K+ + + W++K A++MD+IID N
Sbjct: 688 VNLARDLDKEELKLKRVQSERGWMKKHAEEMDMIIDGYN 726
Score = 81.6 bits (200), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ R+L +CP I+VATPG L
Sbjct: 344 GLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGRL 402
>gi|195336062|ref|XP_002034666.1| GM19796 [Drosophila sechellia]
gi|194126636|gb|EDW48679.1| GM19796 [Drosophila sechellia]
Length = 814
Score = 491 bits (1264), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/514 (47%), Positives = 344/514 (66%), Gaps = 28/514 (5%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
EL+ + T ED+ + W +P +I+RAL ++GFKTPT+IQ++ +P+A+ +KDI+
Sbjct: 203 ELVSIPTDEAEDV----SAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDIL 258
Query: 811 GAAETGSGKTLAFGIPILTGIV------------------NKLENPTEEDENDSGLEEEA 852
GAAETGSGKTLAFGIP+L GI+ + P ++ + EE
Sbjct: 259 GAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEEL 318
Query: 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 912
+ V +EES + E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + G
Sbjct: 319 DHVSGASDEES-DAEEHTQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFG 377
Query: 913 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
G++ KQ R+L +CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E GHF
Sbjct: 378 GLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFE 437
Query: 973 ELKNILDRVTMTETSQ-PRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG-DPSIKR 1028
EL+++L + E + RQ FV+SATLT H L + + + + K V + D I+
Sbjct: 438 ELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIES 497
Query: 1029 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 1088
L + L I PKIVD+T +TLTES++LC D KD +LYYFI +HPGRT+VFCNSI
Sbjct: 498 LIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSID 557
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EH
Sbjct: 558 CVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEH 617
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208
VIHY VPRTSE Y+HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI
Sbjct: 618 VIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPIS 677
Query: 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
E L +++R++LA+ ++ E K+K+ + + W+
Sbjct: 678 ERFLGAVRERVNLARDLDKEELKLKRVQSERGWM 711
Score = 425 bits (1092), Expect = e-115, Method: Compositional matrix adjust.
Identities = 256/654 (39%), Positives = 353/654 (53%), Gaps = 152/654 (23%)
Query: 21 VKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRK 80
+++KR+K+K L+ + KSK K N +N+EE +E AD+ +
Sbjct: 133 LREKREKRKELRKQKKSKGKEN----DNSEESSDEHAADRFAL---------------LR 173
Query: 81 QNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDT 140
PS E E++ + D Q + EE EL+ + T
Sbjct: 174 PPPSDDEAEEVAKAEDSADQQESSDEEA------------------------PELVSIPT 209
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
ED+ + W +P +I+RAL ++GFKTPT+IQ++ +P+A+ +KDI+GAAETGS
Sbjct: 210 DEAEDV----SAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDILGAAETGS 265
Query: 201 GKTLAFGIPILTGIV------------------NKLENPTEEDENDSGLEEEAEEVLEEL 242
GKTLAFGIP+L GI+ + P ++ + EE + V
Sbjct: 266 GKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEELDHVSGAS 325
Query: 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ 302
+EES + E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ
Sbjct: 326 DEES-DAEEHTQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQ 384
Query: 303 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 362
R+L +CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E G
Sbjct: 385 ERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKG---------- 434
Query: 363 RVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ-PRQTFVFSATLT--HSLKNSLN 419
HF EL+++L + E + RQ FV+SATLT H L + +
Sbjct: 435 ------------------HFEELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHM- 475
Query: 420 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 479
+K + G K PK V K + KI
Sbjct: 476 --------QKRNVG-------------KRPKFV---------KQTVDQKI---------- 495
Query: 480 LYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 539
+L EE L I PKIVD+T +TLTES++LC D KD +LYYF
Sbjct: 496 ----------ESLIEE----LGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYF 541
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
I +HPGRT+VFCNSI VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+
Sbjct: 542 IQRHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLI 601
Query: 600 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
ATDVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +E E+
Sbjct: 602 ATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEV 655
Score = 96.7 bits (239), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E L +++R
Sbjct: 628 ENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPISERFLGAVRER 687
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDEN 1335
++LA+ ++ E K+K+ + + W++K A++MD+IID N
Sbjct: 688 VNLARDLDKEELKLKRVQSERGWMKKHAEEMDMIIDGYN 726
Score = 81.6 bits (200), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ R+L +CP I+VATPG L
Sbjct: 344 GLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGRL 402
>gi|20130173|ref|NP_611467.1| CG9143 [Drosophila melanogaster]
gi|7302399|gb|AAF57487.1| CG9143 [Drosophila melanogaster]
gi|33636633|gb|AAQ23614.1| LD11580p [Drosophila melanogaster]
Length = 813
Score = 491 bits (1264), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/514 (47%), Positives = 344/514 (66%), Gaps = 28/514 (5%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
EL+ + T EDM + W +P +I+RAL ++GFKTPT+IQ++ +P+A+ +KDI+
Sbjct: 202 ELVPISTGEAEDM----SAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDIL 257
Query: 811 GAAETGSGKTLAFGIPILTGIV------------------NKLENPTEEDENDSGLEEEA 852
GAAETGSGKTLAFGIP+L GI+ + P ++ + EE
Sbjct: 258 GAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEEL 317
Query: 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 912
+ V +EES + E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + G
Sbjct: 318 DHVSGASDEES-DAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFG 376
Query: 913 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
G++ KQ R+L +CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E GHF
Sbjct: 377 GLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFE 436
Query: 973 ELKNILDRVTMTETSQ-PRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG-DPSIKR 1028
EL+++L + E + RQ FV+SATLT H L + + + + K V + D I+
Sbjct: 437 ELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIES 496
Query: 1029 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 1088
L + L I PKIVD+T +TLTES++LC D KD +LYYFI +HPGRT+VFCNSI
Sbjct: 497 LIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSID 556
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EH
Sbjct: 557 CVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEH 616
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208
VIHY VPRTSE Y+HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI
Sbjct: 617 VIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPIL 676
Query: 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
E + +++R++LA+ ++ E K+K+ + + W+
Sbjct: 677 ERFMGAVRERVNLARDLDKEELKLKRVQSERGWM 710
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 255/654 (38%), Positives = 355/654 (54%), Gaps = 153/654 (23%)
Query: 21 VKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRK 80
+++KR+K+K L+ + KSK K N +N+EE +E AD+
Sbjct: 133 LREKREKRKELRKQKKSKGKEN----DNSEESSDEHAADR-------------------- 168
Query: 81 QNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDT 140
+ L +D +++V K E+ + S+ + EL+ + T
Sbjct: 169 -------FALLRPPPSDDEEEVVKAEDSADQQESTDE-------------EAPELVPIST 208
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
EDM + W +P +I+RAL ++GFKTPT+IQ++ +P+A+ +KDI+GAAETGS
Sbjct: 209 GEAEDM----SAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDILGAAETGS 264
Query: 201 GKTLAFGIPILTGIV------------------NKLENPTEEDENDSGLEEEAEEVLEEL 242
GKTLAFGIP+L GI+ + P ++ + EE + V
Sbjct: 265 GKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEELDHVSGAS 324
Query: 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ 302
+EES + E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ
Sbjct: 325 DEES-DAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQ 383
Query: 303 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 362
R+L +CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E G
Sbjct: 384 ERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKG---------- 433
Query: 363 RVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ-PRQTFVFSATLT--HSLKNSLN 419
HF EL+++L + E + RQ FV+SATLT H L + +
Sbjct: 434 ------------------HFEELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHM- 474
Query: 420 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 479
+K + G K PK V K + KI
Sbjct: 475 --------QKRNVG-------------KRPKFV---------KQTVDQKI---------- 494
Query: 480 LYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 539
+L EE L I PKIVD+T +TLTES++LC D KD +LYYF
Sbjct: 495 ----------ESLIEE----LGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYF 540
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
I +HPGRT+VFCNSI VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+
Sbjct: 541 IQRHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLI 600
Query: 600 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
ATDVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +E E+
Sbjct: 601 ATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEV 654
Score = 94.4 bits (233), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E + +++R
Sbjct: 627 ENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPILERFMGAVRER 686
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDEN 1335
++LA+ ++ E K+K+ + + W++K A++MD+IID N
Sbjct: 687 VNLARDLDKEELKLKRVQSERGWMKKHAEEMDMIIDGYN 725
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ R+L +CP I+VATPG L
Sbjct: 343 GLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGRL 401
>gi|194881539|ref|XP_001974888.1| GG20872 [Drosophila erecta]
gi|190658075|gb|EDV55288.1| GG20872 [Drosophila erecta]
Length = 815
Score = 491 bits (1264), Expect = e-135, Method: Compositional matrix adjust.
Identities = 242/514 (47%), Positives = 343/514 (66%), Gaps = 28/514 (5%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
EL+ + T ED+ + W +P +I+RAL ++GFK PT+IQ++ +P+A+ +KDI+
Sbjct: 204 ELVPISTGEGEDV----SAWNGLGVPASILRALGEQGFKAPTQIQALTLPAAIHGKKDIL 259
Query: 811 GAAETGSGKTLAFGIPILTGIV------------------NKLENPTEEDENDSGLEEEA 852
GAAETGSGKTLAFGIP+L GI+ + P ++ + EE
Sbjct: 260 GAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEEL 319
Query: 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 912
+ V +EES + E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + G
Sbjct: 320 DHVSGASDEES-DAEEHAQRMQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFG 378
Query: 913 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
G++ KQ R+L +CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E GHF
Sbjct: 379 GLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFE 438
Query: 973 ELKNILDRVTMTETSQ-PRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG-DPSIKR 1028
EL+++L + E + RQ FV+SATLT H L + + + + K V + D I+
Sbjct: 439 ELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIES 498
Query: 1029 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 1088
L + L I PKIVD+T +TLTES++LC D KD +LYYFI +HPGRT+VFCNSI
Sbjct: 499 LIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSID 558
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EH
Sbjct: 559 CVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEH 618
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208
VIHY VPRTSE Y+HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI
Sbjct: 619 VIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPIS 678
Query: 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
E L +++R++LA+ ++ E K+K+ + + W+
Sbjct: 679 ERFLGAVRERVNLARDLDKEELKLKRVQSERGWM 712
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 231/541 (42%), Positives = 312/541 (57%), Gaps = 109/541 (20%)
Query: 134 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
EL+ + T ED+ + W +P +I+RAL ++GFK PT+IQ++ +P+A+ +KDI+
Sbjct: 204 ELVPISTGEGEDV----SAWNGLGVPASILRALGEQGFKAPTQIQALTLPAAIHGKKDIL 259
Query: 194 GAAETGSGKTLAFGIPILTGIV------------------NKLENPTEEDENDSGLEEEA 235
GAAETGSGKTLAFGIP+L GI+ + P ++ + EE
Sbjct: 260 GAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEEL 319
Query: 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 295
+ V +EES + E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + G
Sbjct: 320 DHVSGASDEES-DAEEHAQRMQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFG 378
Query: 296 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 355
G++ KQ R+L +CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E G
Sbjct: 379 GLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKG--- 435
Query: 356 ELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ-PRQTFVFSATLT--H 412
HF EL+++L + E + RQ FV+SATLT H
Sbjct: 436 -------------------------HFEELRSLLKVLNSDEQKKHQRQNFVYSATLTLVH 470
Query: 413 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472
L + + +K + G K PK V K + KI
Sbjct: 471 DLPDHM---------QKRNVG-------------KRPKFV---------KQTVDQKI--- 496
Query: 473 HDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 532
+L EE L I PKIVD+T +TLTES++LC D K
Sbjct: 497 -----------------ESLIEE----LGISQPKIVDITSSQQTAQTLTESRLLCPIDHK 535
Query: 533 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592
D +LYYFI +HPGRT+VFCNSI VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD
Sbjct: 536 DYHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRD 595
Query: 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+L+ATDVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +E E
Sbjct: 596 SPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGE 655
Query: 653 I 653
+
Sbjct: 656 V 656
Score = 97.1 bits (240), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E L +++R
Sbjct: 629 ENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPISERFLGAVRER 688
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDEN 1335
++LA+ ++ E K+K+ + + W++K A++MD+IID N
Sbjct: 689 VNLARDLDKEELKLKRVQSERGWMKKHAEEMDMIIDGYN 727
Score = 81.6 bits (200), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ R+L +CP I+VATPG L
Sbjct: 345 GLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGRL 403
>gi|195486926|ref|XP_002091709.1| GE13811 [Drosophila yakuba]
gi|194177810|gb|EDW91421.1| GE13811 [Drosophila yakuba]
Length = 808
Score = 491 bits (1264), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/514 (47%), Positives = 344/514 (66%), Gaps = 28/514 (5%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
EL+ + TS ED+ + W +P +I+RAL ++GFK PT+IQ++ +P+A+ +KDI+
Sbjct: 197 ELVPISTSEAEDV----SAWNGLGVPASILRALGEQGFKAPTQIQALTLPAAIHGKKDIL 252
Query: 811 GAAETGSGKTLAFGIPILTGIV------------------NKLENPTEEDENDSGLEEEA 852
GAAETGSGKTLAFGIP+L GI+ + P ++ + EE
Sbjct: 253 GAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEEL 312
Query: 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 912
+ V +EES + E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + G
Sbjct: 313 DHVSGASDEES-DAEEQAQRIQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFG 371
Query: 913 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
G++ KQ R+L +CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E GHF
Sbjct: 372 GLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFE 431
Query: 973 ELKNILDRVTMTETSQ-PRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG-DPSIKR 1028
EL+++L + E + RQ FV+SATLT H L + + + + K V + D I+
Sbjct: 432 ELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIES 491
Query: 1029 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 1088
L + L I PKIVD+T +TLTES++LC D KD +LYYFI +HPGRT+VFCNSI
Sbjct: 492 LIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSID 551
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EH
Sbjct: 552 CVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEH 611
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208
VIHY VPRTSE Y+HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI
Sbjct: 612 VIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPIS 671
Query: 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
E L +++R++LA+ ++ E K+K+ + + W+
Sbjct: 672 ERFLGAVRERVNLARDLDKEELKLKRVQSERGWM 705
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 232/541 (42%), Positives = 313/541 (57%), Gaps = 109/541 (20%)
Query: 134 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
EL+ + TS ED+ + W +P +I+RAL ++GFK PT+IQ++ +P+A+ +KDI+
Sbjct: 197 ELVPISTSEAEDV----SAWNGLGVPASILRALGEQGFKAPTQIQALTLPAAIHGKKDIL 252
Query: 194 GAAETGSGKTLAFGIPILTGIV------------------NKLENPTEEDENDSGLEEEA 235
GAAETGSGKTLAFGIP+L GI+ + P ++ + EE
Sbjct: 253 GAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEEL 312
Query: 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 295
+ V +EES + E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + G
Sbjct: 313 DHVSGASDEES-DAEEQAQRIQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFG 371
Query: 296 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 355
G++ KQ R+L +CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E G
Sbjct: 372 GLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKG--- 428
Query: 356 ELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ-PRQTFVFSATLT--H 412
HF EL+++L + E + RQ FV+SATLT H
Sbjct: 429 -------------------------HFEELRSLLKVLNSDEQKKHQRQNFVYSATLTLVH 463
Query: 413 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472
L + + +K + G K PK V K + KI
Sbjct: 464 DLPDHM---------QKRNVG-------------KRPKFV---------KQTVDQKI--- 489
Query: 473 HDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 532
+L EE L I PKIVD+T +TLTES++LC D K
Sbjct: 490 -----------------ESLIEE----LGISQPKIVDITSSQQTAQTLTESRLLCPIDHK 528
Query: 533 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592
D +LYYFI +HPGRT+VFCNSI VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD
Sbjct: 529 DYHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRD 588
Query: 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+L+ATDVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +E E
Sbjct: 589 SPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGE 648
Query: 653 I 653
+
Sbjct: 649 V 649
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 89/136 (65%), Gaps = 12/136 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E L +++R
Sbjct: 622 ENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPISERFLGAVRER 681
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIID---DENLIQPNQ--LLIFESRN-- 1349
++LA+ ++ E K+K+ + + W++K A++MD+IID DE+ +P++ +I RN
Sbjct: 682 VNLARDLDKEELKLKRVQSERGWMKKHAEEMDMIIDGYNDESGSEPDEDPFVIERRRNRL 741
Query: 1350 ----LRYSWDALILAP 1361
+R +AL+ P
Sbjct: 742 RVETVRAQLNALLAQP 757
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ R+L +CP I+VATPG L
Sbjct: 338 GLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGRL 396
>gi|194753466|ref|XP_001959033.1| GF12675 [Drosophila ananassae]
gi|190620331|gb|EDV35855.1| GF12675 [Drosophila ananassae]
Length = 813
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/518 (47%), Positives = 343/518 (66%), Gaps = 34/518 (6%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
EL+ + N V ++ W +P I+RAL ++GF PT+IQ++ +P+A+ +KDI+
Sbjct: 200 ELVSISNGNG----VDVSAWNGLGVPAPILRALGEQGFSAPTQIQALTLPAAIHGKKDIL 255
Query: 811 GAAETGSGKTLAFGIPILTGIV----------------NKLENPTEEDENDSGLEEEAEE 854
GAAETGSGKTLAFGIP+L GI+ K E P E +D E E
Sbjct: 256 GAAETGSGKTLAFGIPMLAGIMELKQRNVKSGIRKAPKTKGEKPAAEPADD---EHELTP 312
Query: 855 VLEELE------EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA 908
EEL+ +E ++ E ++ + LY L+L PTRELA+QV+NH++ A KYT +KVA
Sbjct: 313 PPEELDHVSGASDEESDVEEHNQRMQRPLYGLVLTPTRELAVQVKNHLVAAAKYTGIKVA 372
Query: 909 CVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES 968
+ GG++ KQ R+L +CP I+VATPGRLWE G+ HL+++ ++LVIDETDRM+E
Sbjct: 373 AIFGGLAVAKQERVLRQCPEIVVATPGRLWELYCQGNQHLSKIEDASFLVIDETDRMVEK 432
Query: 969 GHFPELKNILDRVTMTETS-QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG-DP 1024
GHF EL+++L + E Q RQ FV+SATLT H L + + + + K V + D
Sbjct: 433 GHFEELRSLLKVLNSDEQKKQQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQ 492
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 1084
I+ L + L I PKIVD+T +TLTES++LC D+KD +LYYFI +HPGRT+VFC
Sbjct: 493 KIESLIEELGISQPKIVDITSSQQTAQTLTESRLLCPLDQKDYHLYYFIQRHPGRTIVFC 552
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
NSI VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP
Sbjct: 553 NSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIP 612
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD 1204
+EHVIHY VPRTSE Y+HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP
Sbjct: 613 NVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPL 672
Query: 1205 FPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
FPI E L +K+R++LA+ ++ E K+K+ + + W+
Sbjct: 673 FPISERFLGAVKERVNLARDLDKEELKLKRVQSERGWM 710
Score = 418 bits (1075), Expect = e-113, Method: Compositional matrix adjust.
Identities = 235/545 (43%), Positives = 312/545 (57%), Gaps = 115/545 (21%)
Query: 134 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
EL+ + N V ++ W +P I+RAL ++GF PT+IQ++ +P+A+ +KDI+
Sbjct: 200 ELVSISNGNG----VDVSAWNGLGVPAPILRALGEQGFSAPTQIQALTLPAAIHGKKDIL 255
Query: 194 GAAETGSGKTLAFGIPILTGIV----------------NKLENPTEEDENDSGLEEEAEE 237
GAAETGSGKTLAFGIP+L GI+ K E P E +D E E
Sbjct: 256 GAAETGSGKTLAFGIPMLAGIMELKQRNVKSGIRKAPKTKGEKPAAEPADD---EHELTP 312
Query: 238 VLEELE------EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA 291
EEL+ +E ++ E ++ + LY L+L PTRELA+QV+NH++ A KYT +KVA
Sbjct: 313 PPEELDHVSGASDEESDVEEHNQRMQRPLYGLVLTPTRELAVQVKNHLVAAAKYTGIKVA 372
Query: 292 CVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES 351
+ GG++ KQ R+L +CP I+VATPGRLWE G+ HL+++ ++LVIDETDRM+E
Sbjct: 373 AIFGGLAVAKQERVLRQCPEIVVATPGRLWELYCQGNQHLSKIEDASFLVIDETDRMVEK 432
Query: 352 GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS-QPRQTFVFSATL 410
G HF EL+++L + E Q RQ FV+SATL
Sbjct: 433 G----------------------------HFEELRSLLKVLNSDEQKKQQRQNFVYSATL 464
Query: 411 T--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468
T H L + + +K + G K PK V K + K
Sbjct: 465 TLVHDLPDHM---------QKRNVG-------------KRPKFV---------KQTVDQK 493
Query: 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 528
I +L EE L I PKIVD+T +TLTES++LC
Sbjct: 494 I--------------------ESLIEE----LGISQPKIVDITSSQQTAQTLTESRLLCP 529
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
D+KD +LYYFI +HPGRT+VFCNSI VKRL L +L C+PLPLHA+M Q+QRLKNL+
Sbjct: 530 LDQKDYHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLE 589
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
RFRD +L+ATDVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +
Sbjct: 590 RFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFM 649
Query: 649 ESDEI 653
E E+
Sbjct: 650 EPGEV 654
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E L +K+R
Sbjct: 627 ENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPISERFLGAVKER 686
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDEN 1335
++LA+ ++ E K+K+ + + W++K A++MD+IID N
Sbjct: 687 VNLARDLDKEELKLKRVQSERGWMKKHAEEMDMIIDGYN 725
Score = 82.4 bits (202), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+NH++ A KYT +KVA + GG++ KQ R+L +CP I+VATPG L
Sbjct: 343 GLVLTPTRELAVQVKNHLVAAAKYTGIKVAAIFGGLAVAKQERVLRQCPEIVVATPGRL 401
>gi|195429401|ref|XP_002062751.1| GK19535 [Drosophila willistoni]
gi|194158836|gb|EDW73737.1| GK19535 [Drosophila willistoni]
Length = 823
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 340/503 (67%), Gaps = 28/503 (5%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
++ W +P+ I+RAL +KGF+ PT+IQ+M +P+A+ +KDI+GAAETGSGKTLAFGIP
Sbjct: 217 LSSWHGLGVPQPILRALAEKGFREPTQIQAMTLPAAIHGKKDILGAAETGSGKTLAFGIP 276
Query: 827 ILTGIVN----------------------KLENPTEEDEND-SGLEEEAEEVLEELEEES 863
+L GI++ K E P +DE++ + EE + V +E+
Sbjct: 277 MLAGIMDLKERNAKHGIRKAPKVKGEDSQKSEEPPRDDEHELTPPPEELDHVSGASDEDD 336
Query: 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923
++ LYAL+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ R+L
Sbjct: 337 SDLENHSASRERPLYALVLTPTRELAVQVKNHLVAAAKYTGIRVATIFGGLAVAKQERVL 396
Query: 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
+ P I+VATPGRLWE G+ HL+++ +++LVIDETDRM+E GHF EL+++L +
Sbjct: 397 RQGPEIVVATPGRLWELYCQGNHHLSKINDVSFLVIDETDRMVEKGHFEELRSLLKVLNG 456
Query: 984 TETS-QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG-DPSIKRLQDLLNIKSPK 1039
E Q RQ FVFSATLT H L + + + K K V + D I+ L + L I PK
Sbjct: 457 DEQKKQLRQNFVFSATLTLVHDLPDHMQKRNVGKKPKFVKQTVDQKIESLIEELGIMQPK 516
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 1099
IVD+T + LTES++LC D+KD++LYYFI +HPGRT+VFCNSI VKRL L +
Sbjct: 517 IVDITSSQQTAQNLTESRLLCPLDQKDNHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGL 576
Query: 1100 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EHVIHY VPRTSE
Sbjct: 577 LDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSE 636
Query: 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1219
Y+HRSGRTARAN G+T++ +E E+ Y+K++ +L++ DLP FPI E LS +++R+
Sbjct: 637 NYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLQRTEDLPLFPISERYLSAVRERV 696
Query: 1220 DLAKSIEYLESKIKKNRPD-NWL 1241
+LA+ ++ E K+K+ + + W+
Sbjct: 697 NLARDLDREELKLKRTQSELGWM 719
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/530 (43%), Positives = 308/530 (58%), Gaps = 109/530 (20%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
++ W +P+ I+RAL +KGF+ PT+IQ+M +P+A+ +KDI+GAAETGSGKTLAFGIP
Sbjct: 217 LSSWHGLGVPQPILRALAEKGFREPTQIQAMTLPAAIHGKKDILGAAETGSGKTLAFGIP 276
Query: 210 ILTGIVN----------------------KLENPTEEDEND-SGLEEEAEEVLEELEEES 246
+L GI++ K E P +DE++ + EE + V +E+
Sbjct: 277 MLAGIMDLKERNAKHGIRKAPKVKGEDSQKSEEPPRDDEHELTPPPEELDHVSGASDEDD 336
Query: 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306
++ LYAL+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ R+L
Sbjct: 337 SDLENHSASRERPLYALVLTPTRELAVQVKNHLVAAAKYTGIRVATIFGGLAVAKQERVL 396
Query: 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 366
+ P I+VATPGRLWE G+ HL+++ +++LVIDETDRM+E G
Sbjct: 397 RQGPEIVVATPGRLWELYCQGNHHLSKINDVSFLVIDETDRMVEKG-------------- 442
Query: 367 TETSQPRQTMIESGHFPELKNILDRVTMTETS-QPRQTFVFSATLT--HSLKNSLNLKKG 423
HF EL+++L + E Q RQ FVFSATLT H L + +
Sbjct: 443 --------------HFEELRSLLKVLNGDEQKKQLRQNFVFSATLTLVHDLPDHM----- 483
Query: 424 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 483
+K + G K PK V K + KI
Sbjct: 484 ----QKRNVG-------------KKPKFV---------KQTVDQKI-------------- 503
Query: 484 ILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 543
+L EE L I PKIVD+T + LTES++LC D+KD++LYYFI +H
Sbjct: 504 ------ESLIEE----LGIMQPKIVDITSSQQTAQNLTESRLLCPLDQKDNHLYYFIQRH 553
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
PGRT+VFCNSI VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDV
Sbjct: 554 PGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDV 613
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
AARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +E E+
Sbjct: 614 AARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEV 663
Score = 98.2 bits (243), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARAN G+T++ +E E+ Y+K++ +L++ DLP FPI E LS +++R
Sbjct: 636 ENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLQRTEDLPLFPISERYLSAVRER 695
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDEN 1335
++LA+ ++ E K+K+ + + W++K A++MD+IID N
Sbjct: 696 VNLARDLDREELKLKRTQSELGWMKKHAEEMDMIIDGYN 734
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ R+L + P I+VATPG L
Sbjct: 352 ALVLTPTRELAVQVKNHLVAAAKYTGIRVATIFGGLAVAKQERVLRQGPEIVVATPGRL 410
>gi|156550634|ref|XP_001604682.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Nasonia
vitripennis]
Length = 636
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 253/531 (47%), Positives = 343/531 (64%), Gaps = 48/531 (9%)
Query: 755 VDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 814
V T +NE W +P I AL ++ F +PT IQ++ +P A+L R+DI+GAAE
Sbjct: 2 VSTEHNEG-------WSTLGVPSVITEALVEQNFYSPTAIQALALPPAILGRRDILGAAE 54
Query: 815 TGSGKTLAFGIPILTGI--------------------VNKLENPTEEDENDSGLEEEAEE 854
TGSGKTLAFGIP+L GI VNK E + ++ G +E +E
Sbjct: 55 TGSGKTLAFGIPVLNGILELQKKEGKTVQSTSGKFREVNKDEEAASDISDNEG--DENDE 112
Query: 855 VLEELEEESANTTEFVKKTRN-------------KLYALILAPTRELAIQVQNHILDAGK 901
+ E + N VK N LYALIL PTRELAIQ+++H+ A K
Sbjct: 113 PMPEEQSIDKNGIGLVKVVNNVKFDEFDNVKPTKPLYALILTPTRELAIQIKDHLTKAAK 172
Query: 902 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
YT +K+A VVGGM+ KQ RIL+K P I++ATPGRLWE I G+ HL++L + YLVIDE
Sbjct: 173 YTDIKIAVVVGGMAAVKQERILSKGPEIVIATPGRLWELIDEGNPHLSQLPSVKYLVIDE 232
Query: 962 TDRMIESGHFPELKNILDRVTMTETS-QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
TDRM+E GHF EL +I++R+ E+ + RQTFVFSATLT H + + L KK ++ K
Sbjct: 233 TDRMLEKGHFLELHDIIERINSVESKVKRRQTFVFSATLTLVHDIPDYLQRKKIRNSKSK 292
Query: 1019 VSKGDPS--IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
+ K P ++++ D+L +K+PKI+D+T+ G + LTE +I C D KD YLYYF+ +H
Sbjct: 293 IFKLTPGQKLQKVIDMLKVKNPKIIDVTKDTGTARNLTECRIACTIDHKDYYLYYFLKRH 352
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
GRTLVFCNSI VKRL L +L+C PLPLHASM QRQRLKNL+RF+ N +L+ATDV
Sbjct: 353 SGRTLVFCNSIGCVKRLATLFGILECKPLPLHASMPQRQRLKNLERFQADENGLLIATDV 412
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
AARGLDIP IEHVIHY VPRTSE Y+HRSGRTARA EG+T++++E E P Y ++ +L
Sbjct: 413 AARGLDIPCIEHVIHYQVPRTSESYVHRSGRTARAQKEGITVLMMEPTEKPYYSRLCKTL 472
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHRSGR 1246
+ DLP FP+ + +L +K+R+++A+ I+ LE ++ N WL ++ +
Sbjct: 473 NRTEDLPTFPVVDRLLVAVKERVNVAREIDKLELTCRRDNSQKGWLQKAAK 523
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 244/558 (43%), Positives = 314/558 (56%), Gaps = 127/558 (22%)
Query: 138 VDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 197
V T +NE W +P I AL ++ F +PT IQ++ +P A+L R+DI+GAAE
Sbjct: 2 VSTEHNEG-------WSTLGVPSVITEALVEQNFYSPTAIQALALPPAILGRRDILGAAE 54
Query: 198 TGSGKTLAFGIPILTGI--------------------VNKLENPTEEDENDSGLEEEAEE 237
TGSGKTLAFGIP+L GI VNK E + ++ G +E +E
Sbjct: 55 TGSGKTLAFGIPVLNGILELQKKEGKTVQSTSGKFREVNKDEEAASDISDNEG--DENDE 112
Query: 238 VLEELEEESANTTEFVKKTRN-------------KLYALILAPTRELAIQVQNHILDAGK 284
+ E + N VK N LYALIL PTRELAIQ+++H+ A K
Sbjct: 113 PMPEEQSIDKNGIGLVKVVNNVKFDEFDNVKPTKPLYALILTPTRELAIQIKDHLTKAAK 172
Query: 285 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
YT +K+A VVGGM+ KQ RIL+K P I++ATPGRLWE I G+ HL++L + YLVIDE
Sbjct: 173 YTDIKIAVVVGGMAAVKQERILSKGPEIVIATPGRLWELIDEGNPHLSQLPSVKYLVIDE 232
Query: 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS-QPRQT 403
TDRM+E G HF EL +I++R+ E+ + RQT
Sbjct: 233 TDRMLEKG----------------------------HFLELHDIIERINSVESKVKRRQT 264
Query: 404 FVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
FVFSATLT H + + L KK + N KS KI LT
Sbjct: 265 FVFSATLTLVHDIPDYLQRKK--------------------IRNSKS-KIFKLT------ 297
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PG+ L +++ D+L +K+PKI+D+T+ G + LT
Sbjct: 298 --------------------------PGQKL-QKVIDMLKVKNPKIIDVTKDTGTARNLT 330
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E +I C D KD YLYYF+ +H GRTLVFCNSI VKRL L +L+C PLPLHASM QR
Sbjct: 331 ECRIACTIDHKDYYLYYFLKRHSGRTLVFCNSIGCVKRLATLFGILECKPLPLHASMPQR 390
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRLKNL+RF+ N +L+ATDVAARGLDIP IEHVIHY VPRTSE Y+HRSGRTARA E
Sbjct: 391 QRLKNLERFQADENGLLIATDVAARGLDIPCIEHVIHYQVPRTSESYVHRSGRTARAQKE 450
Query: 642 GLTVVLIESDEIPLKTKF 659
G+TV+++E E P ++
Sbjct: 451 GITVLMMEPTEKPYYSRL 468
Score = 80.9 bits (198), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 47/59 (79%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELAIQ+++H+ A KYT +K+A VVGGM+ KQ RIL+K P I++ATPG L
Sbjct: 150 ALILTPTRELAIQIKDHLTKAAKYTDIKIAVVVGGMAAVKQERILSKGPEIVIATPGRL 208
Score = 48.1 bits (113), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1418 RIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKALVS 1476
R+++A+ I+ LE ++ N WL+KAAKDMD+++DDE + +E A + + L
Sbjct: 494 RVNVAREIDKLELTCRRDNSQKGWLQKAAKDMDLLLDDEEF-ETTMEVKEMADLKRKLKG 552
Query: 1477 KRKELQSLLGK 1487
KR L SLL K
Sbjct: 553 KRAHLASLLKK 563
>gi|195382239|ref|XP_002049838.1| GJ21808 [Drosophila virilis]
gi|194144635|gb|EDW61031.1| GJ21808 [Drosophila virilis]
Length = 819
Score = 488 bits (1256), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/505 (47%), Positives = 339/505 (67%), Gaps = 28/505 (5%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M +W +P I+RAL ++G++ PT+IQ+M +P+A+ +KDI+GAAETGSGKTLAFGIP
Sbjct: 209 MTKWNGMGVPAPIMRALAEQGYEAPTQIQAMTLPAAIHGKKDILGAAETGSGKTLAFGIP 268
Query: 827 ILTGIV--------------------NKLENPTE-EDENDSGLEEEAEEV--LEELEEES 863
IL+GI+ ++E P + +D ++ L EE+ + +E
Sbjct: 269 ILSGIMELKQRNDGSCIRKAPKVKGTQQVEEPPQSKDNHNHELTPPPEELDYVSGASDEE 328
Query: 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923
++ E + LYA++L PTRELA+QV+NH++ A KYT ++VA + GG+S KQ R+L
Sbjct: 329 SDAEEHNQGMGRPLYAVVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLSVAKQERVL 388
Query: 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
+CP I+VATPGRLWE G+ HL ++ +N+L IDETDRM+E GHF EL+++L +
Sbjct: 389 RQCPEIVVATPGRLWELYAQGNQHLNKIENVNFLCIDETDRMVEKGHFEELRSLLKVLNA 448
Query: 984 TETSQP-RQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG-DPSIKRLQDLLNIKSPK 1039
E + RQ FVFSATLT H L + + + K V + D I+ L + L I PK
Sbjct: 449 DEDRKKLRQNFVFSATLTLVHDLPEHMQKRNLAKRPKFVKQTVDQKIESLIEELGISQPK 508
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 1099
IVD+T +TLTES++LC DEKD YLYYF+ +HPGRT+VFCNSI VKRL L +
Sbjct: 509 IVDITSSQQTAQTLTESRLLCAIDEKDYYLYYFVQRHPGRTIVFCNSIDCVKRLATLFGL 568
Query: 1100 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EHVIHY VPRTSE
Sbjct: 569 LDCNPLPLHANMIQKQRLKNLERFRDSPMGLLIATDVAARGLDIPNVEHVIHYQVPRTSE 628
Query: 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1219
Y+HRSGRTARAN G+T++ +E E+ Y++++ +LE+ DLP FPI E + +K+R+
Sbjct: 629 NYVHRSGRTARANKHGITVMFMEPGEVKTYVRLYKTLERTEDLPLFPISERFMGSVKERV 688
Query: 1220 DLAKSIEYLESKIKKNRP-DNWLHR 1243
+LA+ ++ E K+++ + + W+ +
Sbjct: 689 NLARELDKEELKLRRTQSEEGWMKK 713
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/530 (43%), Positives = 305/530 (57%), Gaps = 109/530 (20%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M +W +P I+RAL ++G++ PT+IQ+M +P+A+ +KDI+GAAETGSGKTLAFGIP
Sbjct: 209 MTKWNGMGVPAPIMRALAEQGYEAPTQIQAMTLPAAIHGKKDILGAAETGSGKTLAFGIP 268
Query: 210 ILTGIV--------------------NKLENPTE-EDENDSGLEEEAEEV--LEELEEES 246
IL+GI+ ++E P + +D ++ L EE+ + +E
Sbjct: 269 ILSGIMELKQRNDGSCIRKAPKVKGTQQVEEPPQSKDNHNHELTPPPEELDYVSGASDEE 328
Query: 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306
++ E + LYA++L PTRELA+QV+NH++ A KYT ++VA + GG+S KQ R+L
Sbjct: 329 SDAEEHNQGMGRPLYAVVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLSVAKQERVL 388
Query: 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 366
+CP I+VATPGRLWE G+ HL ++ +N+L IDETDRM+E G
Sbjct: 389 RQCPEIVVATPGRLWELYAQGNQHLNKIENVNFLCIDETDRMVEKG-------------- 434
Query: 367 TETSQPRQTMIESGHFPELKNILDRVTMTETSQP-RQTFVFSATLT--HSLKNSLNLKKG 423
HF EL+++L + E + RQ FVFSATLT H L
Sbjct: 435 --------------HFEELRSLLKVLNADEDRKKLRQNFVFSATLTLVHDLP-------- 472
Query: 424 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 483
+ +Q K PK V K + KI
Sbjct: 473 --------------EHMQKRNLAKRPKFV---------KQTVDQKI-------------- 495
Query: 484 ILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 543
+L EE L I PKIVD+T +TLTES++LC DEKD YLYYF+ +H
Sbjct: 496 ------ESLIEE----LGISQPKIVDITSSQQTAQTLTESRLLCAIDEKDYYLYYFVQRH 545
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
PGRT+VFCNSI VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDV
Sbjct: 546 PGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPMGLLIATDV 605
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
AARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +E E+
Sbjct: 606 AARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEV 655
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARAN G+T++ +E E+ Y++++ +LE+ DLP FPI E + +K+R
Sbjct: 628 ENYVHRSGRTARANKHGITVMFMEPGEVKTYVRLYKTLERTEDLPLFPISERFMGSVKER 687
Query: 1298 IDLAKSIEYLESKIKKNRP-DNWLEKAAKDMDIIIDDEN 1335
++LA+ ++ E K+++ + + W++K A++MD+IID N
Sbjct: 688 VNLARELDKEELKLRRTQSEEGWMKKHAEEMDMIIDGYN 726
Score = 83.2 bits (204), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 47/59 (79%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A++L PTRELA+QV+NH++ A KYT ++VA + GG+S KQ R+L +CP I+VATPG L
Sbjct: 344 AVVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLSVAKQERVLRQCPEIVVATPGRL 402
>gi|195123017|ref|XP_002006006.1| GI18782 [Drosophila mojavensis]
gi|193911074|gb|EDW09941.1| GI18782 [Drosophila mojavensis]
Length = 819
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 247/508 (48%), Positives = 340/508 (66%), Gaps = 31/508 (6%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+ M +W +PE I+RAL + G++ PT+IQ+M +P+A+ +KDI+GAAETGSGKTLAFG
Sbjct: 208 LDMTKWHGMGVPEPIMRALAELGYEAPTQIQAMTLPAAIHGKKDILGAAETGSGKTLAFG 267
Query: 825 IPILTGIVN-KLEN----------------------PTEEDENDSGLEEEAEEVLEELEE 861
IPIL+GI+ K N PT+++ + EE + V +E
Sbjct: 268 IPILSGIMELKQRNDDSGIRKAPKVKGAQGPVEEAPPTKDNHELTPSPEELDYVSGASDE 327
Query: 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921
ES N + K R LYA++L PTRELA+QV+NH++ A KYT + VA + GG+S KQ R
Sbjct: 328 ESDNEHDPEAKQR-PLYAVVLTPTRELAVQVKNHLVSAAKYTGINVAAIFGGLSVAKQER 386
Query: 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 981
+L +CP I+VATPGRLWE G+ HL+++ +++L IDETDRM+E GHF EL+++L +
Sbjct: 387 VLRQCPEIVVATPGRLWELYAQGNSHLSKIENVSFLCIDETDRMVEKGHFEELRSLLKVL 446
Query: 982 TMTETSQP-RQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG--DPSIKRLQDLLNIK 1036
E + RQ FVFSATLT H L + K+ +K K K D I+ L + L I
Sbjct: 447 NADEERKKLRQNFVFSATLTLVHDLPEHMQ-KRNLAKRPKFIKQTVDQKIESLIEELGIS 505
Query: 1037 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 1096
PKIVD+T +TLTES++LC DEKD YLYYF+ +HPGRT+VFCNSI VKRL L
Sbjct: 506 QPKIVDITSSQQTAQTLTESRLLCAIDEKDYYLYYFVQRHPGRTIVFCNSIDCVKRLATL 565
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
+L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EHVIHY VPR
Sbjct: 566 FGLLDCNPLPLHANMIQKQRLKNLERFRDNPIGLLIATDVAARGLDIPNVEHVIHYQVPR 625
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1216
TSE Y+HRSGRTARAN G+T++ +E E+ Y+++ +LE+ DLP FPI E L +K
Sbjct: 626 TSENYVHRSGRTARANKHGITVMFMEPGEVKAYVRLHKTLERTEDLPLFPISERFLGAVK 685
Query: 1217 KRIDLAKSIEYLESKIKKNRP-DNWLHR 1243
+R++LA+ ++ E K+++ + + W+ +
Sbjct: 686 ERVNLARELDKEELKLRRTQSEEGWMKK 713
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 231/532 (43%), Positives = 309/532 (58%), Gaps = 110/532 (20%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+ M +W +PE I+RAL + G++ PT+IQ+M +P+A+ +KDI+GAAETGSGKTLAFG
Sbjct: 208 LDMTKWHGMGVPEPIMRALAELGYEAPTQIQAMTLPAAIHGKKDILGAAETGSGKTLAFG 267
Query: 208 IPILTGIVN-KLEN----------------------PTEEDENDSGLEEEAEEVLEELEE 244
IPIL+GI+ K N PT+++ + EE + V +E
Sbjct: 268 IPILSGIMELKQRNDDSGIRKAPKVKGAQGPVEEAPPTKDNHELTPSPEELDYVSGASDE 327
Query: 245 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 304
ES N + K R LYA++L PTRELA+QV+NH++ A KYT + VA + GG+S KQ R
Sbjct: 328 ESDNEHDPEAKQR-PLYAVVLTPTRELAVQVKNHLVSAAKYTGINVAAIFGGLSVAKQER 386
Query: 305 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364
+L +CP I+VATPGRLWE G+ HL+++ +++L IDETDRM+E G
Sbjct: 387 VLRQCPEIVVATPGRLWELYAQGNSHLSKIENVSFLCIDETDRMVEKG------------ 434
Query: 365 TMTETSQPRQTMIESGHFPELKNILDRVTMTETSQP-RQTFVFSATLT--HSLKNSLNLK 421
HF EL+++L + E + RQ FVFSATLT H L +
Sbjct: 435 ----------------HFEELRSLLKVLNADEERKKLRQNFVFSATLTLVHDLPEHM--- 475
Query: 422 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 481
+ + ++K IK+ D KI L E++GI++
Sbjct: 476 ----QKRNLAKRPKFIKQTVDQ------KIESLIEELGISQ------------------- 506
Query: 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 541
PKIVD+T +TLTES++LC DEKD YLYYF+
Sbjct: 507 -----------------------PKIVDITSSQQTAQTLTESRLLCAIDEKDYYLYYFVQ 543
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
+HPGRT+VFCNSI VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+AT
Sbjct: 544 RHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDNPIGLLIAT 603
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
DVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +E E+
Sbjct: 604 DVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEV 655
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 96/160 (60%), Gaps = 5/160 (3%)
Query: 1180 LIESDEIPLYIKMFNS--LEKKVDLPDFPIDESVLSLIKKR-IDLAKSIEYLESKIKKNR 1236
L++ + +PL+ M L+ D PI + + + R +D+ + ++ +
Sbjct: 568 LLDCNPLPLHANMIQKQRLKNLERFRDNPIGLLIATDVAARGLDIPNVEHVIHYQVPRTS 627
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
+N++HRSGRTARAN G+T++ +E E+ Y+++ +LE+ DLP FPI E L +K+
Sbjct: 628 -ENYVHRSGRTARANKHGITVMFMEPGEVKAYVRLHKTLERTEDLPLFPISERFLGAVKE 686
Query: 1297 RIDLAKSIEYLESKIKKNRP-DNWLEKAAKDMDIIIDDEN 1335
R++LA+ ++ E K+++ + + W++K A++MD+IID N
Sbjct: 687 RVNLARELDKEELKLRRTQSEEGWMKKHAEEMDMIIDGYN 726
Score = 82.4 bits (202), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A++L PTRELA+QV+NH++ A KYT + VA + GG+S KQ R+L +CP I+VATPG L
Sbjct: 344 AVVLTPTRELAVQVKNHLVSAAKYTGINVAAIFGGLSVAKQERVLRQCPEIVVATPGRL 402
>gi|340717162|ref|XP_003397056.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX24-like
[Bombus terrestris]
Length = 766
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 286/641 (44%), Positives = 395/641 (61%), Gaps = 68/641 (10%)
Query: 684 NVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQ 743
NV +SK+ K+ K S V V E TN+P + K ++ +S E KKL+ +K KK
Sbjct: 53 NVETNSKEVKVSPKHKRSHVWV-ENDIVTNEP--LLKKAKKTKSLE---KKLEGRKAKKI 106
Query: 744 TYTSANKELLEVDTSNNE-----------DMF-VQMAEWVKFNIPETIIRALYQKGFKTP 791
+ K L++ +NN+ D++ + +W +P +I+AL + F P
Sbjct: 107 PKCLSPKNGLDISPNNNDQFSNECNKDKNDVYDIDAQQWYMLGVPTPVIKALKDQQFHEP 166
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV---NKL------------- 835
T IQ++ +P A+L +DI+GAAETGSGKTLAFGIPI+ GI+ NK
Sbjct: 167 TPIQALTLPPAILGHRDILGAAETGSGKTLAFGIPIINGILELKNKQSQQSDMEFGEEIT 226
Query: 836 -----------ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV-----KKTRN---K 876
EN E++N S E + EE +E L + + KT+N
Sbjct: 227 GIIKNKGWICSENKMVENDNSSS-ESDYEEHIEGLNKNGIGCVRVINNVKMSKTQNYTKP 285
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
LYALIL PTRELAIQ+++H+ A KYT +KVA V+GGM+ KQ RIL+K P I++ATPGR
Sbjct: 286 LYALILTPTRELAIQIKDHLTKAIKYTDIKVAVVLGGMAAVKQERILSKGPEIVIATPGR 345
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS-QPRQTFVF 995
LWE IQ G+ HL+++ I YL IDETDRM+E GHF EL+ +L+++ M E + RQTFVF
Sbjct: 346 LWELIQQGNPHLSKVDSIKYLAIDETDRMLEKGHFQELQQLLEKINMNEKKVEERQTFVF 405
Query: 996 SATLT--HSLKNSLNLKKGQSKSKKVSKGDPS--IKRLQDLLNIKSPKIVDLTEKIGITK 1051
SATLT H + L K + K+ K P+ ++++ +L+ IK+PKI+D+T+K G
Sbjct: 406 SATLTMVHDIPEYLEKXKRKHTKSKIQKLTPAQKLQKIMELVGIKNPKIIDVTKKSGTAT 465
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
LTE +I C D KD YLYYF+ ++ GRTLVFCNSI VKRL LL +L C PLPLHASM
Sbjct: 466 NLTECRIACTIDHKDYYLYYFLKRYAGRTLVFCNSIGCVKRLATLLGILDCKPLPLHASM 525
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
QRQRLKNL+RF+ N +L+ATDVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARA
Sbjct: 526 QQRQRLKNLERFQADENGLLIATDVAARGLDIPNVEHVIHYQVPRTSESYVHRSGRTARA 585
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+G+T++++E E Y K+ +L + D+P FP+ + +L K+R+++A+ I+ LE K
Sbjct: 586 QKDGITVLMMEPSEKEYYSKLCKTLGRTEDIPMFPVVDRLLIATKERVEIAREIDKLELK 645
Query: 1232 IKK-NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKM 1271
++ N + WL R E + LVL E DE L ++M
Sbjct: 646 CRRDNSKNGWL-------RKAVEEMDLVL-EEDEENLAVEM 678
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 263/637 (41%), Positives = 351/637 (55%), Gaps = 141/637 (22%)
Query: 67 NVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQ 126
NV +SK+ K+ K S V V E TN+P + K ++ +S E KKL+ +K KK
Sbjct: 53 NVETNSKEVKVSPKHKRSHVWV-ENDIVTNEP--LLKKAKKTKSLE---KKLEGRKAKKI 106
Query: 127 TYTSANKELLEVDTSNNE-----------DMF-VQMAEWVKFNIPETIIRALYQKGFKTP 174
+ K L++ +NN+ D++ + +W +P +I+AL + F P
Sbjct: 107 PKCLSPKNGLDISPNNNDQFSNECNKDKNDVYDIDAQQWYMLGVPTPVIKALKDQQFHEP 166
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV---NKL------------- 218
T IQ++ +P A+L +DI+GAAETGSGKTLAFGIPI+ GI+ NK
Sbjct: 167 TPIQALTLPPAILGHRDILGAAETGSGKTLAFGIPIINGILELKNKQSQQSDMEFGEEIT 226
Query: 219 -----------ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV-----KKTRN---K 259
EN E++N S E + EE +E L + + KT+N
Sbjct: 227 GIIKNKGWICSENKMVENDNSSS-ESDYEEHIEGLNKNGIGCVRVINNVKMSKTQNYTKP 285
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
LYALIL PTRELAIQ+++H+ A KYT +KVA V+GGM+ KQ RIL+K P I++ATPGR
Sbjct: 286 LYALILTPTRELAIQIKDHLTKAIKYTDIKVAVVLGGMAAVKQERILSKGPEIVIATPGR 345
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
LWE IQ G+ HL+++ I YL IDETDRM+E G
Sbjct: 346 LWELIQQGNPHLSKVDSIKYLAIDETDRMLEKG--------------------------- 378
Query: 380 GHFPELKNILDRVTMTETS-QPRQTFVFSAT--LTHSLKNSL-NLKKGQSKSKKVSKGDP 435
HF EL+ +L+++ M E + RQTFVFSAT + H + L K+ +KS
Sbjct: 379 -HFQELQQLLEKINMNEKKVEERQTFVFSATLTMVHDIPEYLEKXKRKHTKS-------- 429
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
KI LT P + L ++
Sbjct: 430 --------------KIQKLT--------------------------------PAQKL-QK 442
Query: 496 IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555
I +L+ IK+PKI+D+T+K G LTE +I C D KD YLYYF+ ++ GRTLVFCNSI
Sbjct: 443 IMELVGIKNPKIIDVTKKSGTATNLTECRIACTIDHKDYYLYYFLKRYAGRTLVFCNSIG 502
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615
VKRL LL +L C PLPLHASM QRQRLKNL+RF+ N +L+ATDVAARGLDIP +EH
Sbjct: 503 CVKRLATLLGILDCKPLPLHASMQQRQRLKNLERFQADENGLLIATDVAARGLDIPNVEH 562
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
VIHY VPRTSE Y+HRSGRTARA +G+TV+++E E
Sbjct: 563 VIHYQVPRTSESYVHRSGRTARAQKDGITVLMMEPSE 599
Score = 83.6 bits (205), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 95/165 (57%), Gaps = 7/165 (4%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
L +++ +PL+ M ++ +L F DE+ L + I +E I P
Sbjct: 511 LGILDCKPLPLHASM-QQRQRLKNLERFQADENGLLIATDVAARGLDIPNVEHVIHYQVP 569
Query: 1238 ---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
++++HRSGRTARA +G+T++++E E Y K+ +L + D+P FP+ + +L
Sbjct: 570 RTSESYVHRSGRTARAQKDGITVLMMEPSEKEYYSKLCKTLGRTEDIPMFPVVDRLLIAT 629
Query: 1295 KKRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIII--DDENL 1336
K+R+++A+ I+ LE K ++ N + WL KA ++MD+++ D+ENL
Sbjct: 630 KERVEIAREIDKLELKCRRDNSKNGWLRKAVEEMDLVLEEDEENL 674
Score = 80.9 bits (198), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 17/145 (11%)
Query: 1340 NQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 1399
N + + +++N ALIL PTRELAIQ+++H+ A KYT +KVA V+GGM+ KQ RI
Sbjct: 272 NNVKMSKTQNYTKPLYALILTPTRELAIQIKDHLTKAIKYTDIKVAVVLGGMAAVKQERI 331
Query: 1400 LNKCPHILVATPGAL---------SLKRIDLAKSIEYLESKIKKNRPDNWLEKAA-KDMD 1449
L+K P I++ATPG L L ++D SI+YL + D LEK +++
Sbjct: 332 LSKGPEIVIATPGRLWELIQQGNPHLSKVD---SIKYLAI----DETDRMLEKGHFQELQ 384
Query: 1450 IIIDDENLIQPKANSRENALMSKAL 1474
+++ N+ + K R+ + S L
Sbjct: 385 QLLEKINMNEKKVEERQTFVFSATL 409
>gi|383856439|ref|XP_003703716.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Megachile
rotundata]
Length = 770
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 253/549 (46%), Positives = 352/549 (64%), Gaps = 49/549 (8%)
Query: 758 SNNED--MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
S+NED ++ + +W + + II+A+ + F TPT IQ++ +P A++ +DI+GAAET
Sbjct: 132 SDNEDDDYYIYIQKWGRLGLYAPIIKAMKDQQFHTPTPIQALTLPPAIMGYRDILGAAET 191
Query: 816 GSGKTLAFGIPILTGIV-------------------NKLENP------TEEDENDSGLEE 850
GSGKTLAFGIPI+ GI+ N +EN E ++DS E
Sbjct: 192 GSGKTLAFGIPIINGILELKNRQVDKSDIKPINGTGNNIENKGWICSDNEMKDDDSSSET 251
Query: 851 EAEEVLEELEEESANTTEFVKKTR---------NKLYALILAPTRELAIQVQNHILDAGK 901
+ EE ++++ E + + K + LYALIL PTRELAIQ+++H+ A K
Sbjct: 252 DHEEDIDDVNENNIGCIRVIDKVKINEDEHYVKKPLYALILTPTRELAIQIKDHLTKAAK 311
Query: 902 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
YT +K+A ++GG++ KQ RIL+K P I++ATPGRLWE IQ G+ HL ++ I YL IDE
Sbjct: 312 YTDIKIAVLLGGLAAVKQERILSKGPEIVIATPGRLWELIQQGNPHLNQVDSIKYLAIDE 371
Query: 962 TDRMIESGHFPELKNILDRVTMTETS-QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
TDRM+E GHF EL+ +L+++ + + + RQ FVFSATLT H + + L KK + S K
Sbjct: 372 TDRMLEKGHFQELQQLLEKININKKKREERQNFVFSATLTMVHDIPDYLQKKKKKHNSSK 431
Query: 1019 VSKGDPS--IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
+ K P ++++ L+ +K+PK+VD+T + G LTE KI C D KD YLYYF+ +H
Sbjct: 432 IFKLTPGQKLQKIIQLVGMKTPKVVDVTRESGTASNLTECKIACTIDHKDYYLYYFLKRH 491
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
GRTLVFCNSI VKRL L +L C PLPLHASM QRQRLKNL+RF+ N +L+ATDV
Sbjct: 492 AGRTLVFCNSIGCVKRLATLFGILDCKPLPLHASMQQRQRLKNLERFQADENGVLIATDV 551
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
AARGLDIP +EHVIHY VPRTSE Y+HRSGRTARA EG+T++++E E Y K+ +L
Sbjct: 552 AARGLDIPNVEHVIHYQVPRTSESYVHRSGRTARALKEGITVLMMEPSEKQYYTKLCKTL 611
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHRSGRTARANNEGL 1255
+ D+P FP+ + +L +K+R+D+A+ I+ LE K ++ N WL R E L
Sbjct: 612 GRTEDIPTFPVVDRLLMAVKERVDIAREIDKLELKCRRDNSQKGWL-------RKAVEDL 664
Query: 1256 TLVLIESDE 1264
LVL E +E
Sbjct: 665 DLVLEEDEE 673
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 235/558 (42%), Positives = 314/558 (56%), Gaps = 121/558 (21%)
Query: 141 SNNED--MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
S+NED ++ + +W + + II+A+ + F TPT IQ++ +P A++ +DI+GAAET
Sbjct: 132 SDNEDDDYYIYIQKWGRLGLYAPIIKAMKDQQFHTPTPIQALTLPPAIMGYRDILGAAET 191
Query: 199 GSGKTLAFGIPILTGIV-------------------NKLENP------TEEDENDSGLEE 233
GSGKTLAFGIPI+ GI+ N +EN E ++DS E
Sbjct: 192 GSGKTLAFGIPIINGILELKNRQVDKSDIKPINGTGNNIENKGWICSDNEMKDDDSSSET 251
Query: 234 EAEEVLEELEEESANTTEFVKKTR---------NKLYALILAPTRELAIQVQNHILDAGK 284
+ EE ++++ E + + K + LYALIL PTRELAIQ+++H+ A K
Sbjct: 252 DHEEDIDDVNENNIGCIRVIDKVKINEDEHYVKKPLYALILTPTRELAIQIKDHLTKAAK 311
Query: 285 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
YT +K+A ++GG++ KQ RIL+K P I++ATPGRLWE IQ G+ HL ++ I YL IDE
Sbjct: 312 YTDIKIAVLLGGLAAVKQERILSKGPEIVIATPGRLWELIQQGNPHLNQVDSIKYLAIDE 371
Query: 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS-QPRQT 403
TDRM+E G HF EL+ +L+++ + + + RQ
Sbjct: 372 TDRMLEKG----------------------------HFQELQQLLEKININKKKREERQN 403
Query: 404 FVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
FVFSATLT H + + L KK + S K I LT
Sbjct: 404 FVFSATLTMVHDIPDYLQKKKKKHNSSK---------------------IFKLT------ 436
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PG+ L + IQ L+ +K+PK+VD+T + G LT
Sbjct: 437 --------------------------PGQKLQKIIQ-LVGMKTPKVVDVTRESGTASNLT 469
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E KI C D KD YLYYF+ +H GRTLVFCNSI VKRL L +L C PLPLHASM QR
Sbjct: 470 ECKIACTIDHKDYYLYYFLKRHAGRTLVFCNSIGCVKRLATLFGILDCKPLPLHASMQQR 529
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRLKNL+RF+ N +L+ATDVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARA E
Sbjct: 530 QRLKNLERFQADENGVLIATDVAARGLDIPNVEHVIHYQVPRTSESYVHRSGRTARALKE 589
Query: 642 GLTVVLIESDEIPLKTKF 659
G+TV+++E E TK
Sbjct: 590 GITVLMMEPSEKQYYTKL 607
Score = 83.6 bits (205), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
++++HRSGRTARA EG+T++++E E Y K+ +L + D+P FP+ + +L +K+R
Sbjct: 574 ESYVHRSGRTARALKEGITVLMMEPSEKQYYTKLCKTLGRTEDIPTFPVVDRLLMAVKER 633
Query: 1298 IDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDE 1334
+D+A+ I+ LE K ++ N WL KA +D+D++++++
Sbjct: 634 VDIAREIDKLELKCRRDNSQKGWLRKAVEDLDLVLEED 671
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 17/129 (13%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
ALIL PTRELAIQ+++H+ A KYT +K+A ++GG++ KQ RIL+K P I++ATPG L
Sbjct: 289 ALILTPTRELAIQIKDHLTKAAKYTDIKIAVLLGGLAAVKQERILSKGPEIVIATPGRLW 348
Query: 1415 --------SLKRIDLAKSIEYLESKIKKNRPDNWLEKAA-KDMDIIIDDENLIQPKANSR 1465
L ++D SI+YL + D LEK +++ +++ N+ + K R
Sbjct: 349 ELIQQGNPHLNQVD---SIKYLAI----DETDRMLEKGHFQELQQLLEKININKKKREER 401
Query: 1466 ENALMSKAL 1474
+N + S L
Sbjct: 402 QNFVFSATL 410
>gi|350407757|ref|XP_003488184.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Bombus impatiens]
Length = 757
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 278/620 (44%), Positives = 387/620 (62%), Gaps = 52/620 (8%)
Query: 684 NVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQ 743
NV SSK+ K+ K+ S V V E N+P + K ++ +S E KKL+ KK
Sbjct: 53 NVETSSKEVKVSPKRKHSHVWV-ENDIVANEP--LLKKAKKTKSPE---KKLEGGNAKKI 106
Query: 744 TYTSANKELLEVDTSNNE-----------DMF-VQMAEWVKFNIPETIIRALYQKGFKTP 791
++K L++ +NN D++ + W +P +I+AL + F P
Sbjct: 107 PKCLSSKNGLDIGPNNNNQFSNDCNKDKNDVYDIDAQRWYMLGVPTPVIKALKDQQFHEP 166
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851
T IQ++ +P A+L +DI+GAAETGSGKTLAFGIPI+ GI+ +++ + + G E
Sbjct: 167 TAIQALTLPPAILGHRDILGAAETGSGKTLAFGIPIINGILELKNKQSQQSDMEFGKEIT 226
Query: 852 ----------AEEVLEELEEESANTTEFVK--------KTRN---KLYALILAPTRELAI 890
+E + E + S+ + V+ KT+N LYALIL PTRELAI
Sbjct: 227 GITKNKGWICSENEMVENDNSSSESDCCVRVINNVKMSKTQNYTKPLYALILTPTRELAI 286
Query: 891 QVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950
Q+++H+ A KYT +KVA V+GGM+ KQ RIL+K P I++ATPGRLWE IQ G+ HL++
Sbjct: 287 QIKDHLTKAVKYTDIKVAVVLGGMAAVKQERILSKGPEIVIATPGRLWELIQQGNPHLSK 346
Query: 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS-QPRQTFVFSATLT--HSLKNSL 1007
+ I YL IDETDRM+E GHF EL+ +L+++ M E + RQTFVFSATLT H + L
Sbjct: 347 VDSIKYLAIDETDRMLEKGHFQELQQLLEKINMNEKKMEERQTFVFSATLTMVHDIPEYL 406
Query: 1008 NLKKGQSKSKKVSKGDPS--IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 1065
KK + K+ K P+ ++++ +L+ IK+PKI+D+T+K G LTE +I C D K
Sbjct: 407 EKKKRKHTKSKIQKLTPAQKLQKIMELVGIKNPKIIDVTKKSGTATNLTECRIACTIDHK 466
Query: 1066 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
D YLYYF+ ++ GRTLVFCNSI VKRL LL +L C PLPLHASM QRQRLKNL+RF+
Sbjct: 467 DYYLYYFLKRYAGRTLVFCNSIGCVKRLATLLGILDCKPLPLHASMQQRQRLKNLERFQA 526
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
N +L+ATDVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARA +G+T++++E E
Sbjct: 527 DENGLLIATDVAARGLDIPNVEHVIHYQVPRTSESYVHRSGRTARAQKDGITVLMMEPSE 586
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHRS 1244
Y K+ +L + DLP FP+ + +L K+R+++A+ I+ LE K ++ N WL
Sbjct: 587 KEYYSKLCKTLGRTEDLPMFPVVDRLLIATKERVEIAREIDKLELKCRRDNSKKGWL--- 643
Query: 1245 GRTARANNEGLTLVLIESDE 1264
R E + LVL E +E
Sbjct: 644 ----RKAVEEMDLVLEEDEE 659
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 251/623 (40%), Positives = 344/623 (55%), Gaps = 126/623 (20%)
Query: 67 NVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQ 126
NV SSK+ K+ K+ S V V E N+P + K ++ +S E KKL+ KK
Sbjct: 53 NVETSSKEVKVSPKRKHSHVWV-ENDIVANEP--LLKKAKKTKSPE---KKLEGGNAKKI 106
Query: 127 TYTSANKELLEVDTSNNE-----------DMF-VQMAEWVKFNIPETIIRALYQKGFKTP 174
++K L++ +NN D++ + W +P +I+AL + F P
Sbjct: 107 PKCLSSKNGLDIGPNNNNQFSNDCNKDKNDVYDIDAQRWYMLGVPTPVIKALKDQQFHEP 166
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234
T IQ++ +P A+L +DI+GAAETGSGKTLAFGIPI+ GI+ +++ + + G E
Sbjct: 167 TAIQALTLPPAILGHRDILGAAETGSGKTLAFGIPIINGILELKNKQSQQSDMEFGKEIT 226
Query: 235 ----------AEEVLEELEEESANTTEFVK--------KTRN---KLYALILAPTRELAI 273
+E + E + S+ + V+ KT+N LYALIL PTRELAI
Sbjct: 227 GITKNKGWICSENEMVENDNSSSESDCCVRVINNVKMSKTQNYTKPLYALILTPTRELAI 286
Query: 274 QVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333
Q+++H+ A KYT +KVA V+GGM+ KQ RIL+K P I++ATPGRLWE IQ G+ HL++
Sbjct: 287 QIKDHLTKAVKYTDIKVAVVLGGMAAVKQERILSKGPEIVIATPGRLWELIQQGNPHLSK 346
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
+ I YL IDETDRM+E GHF EL+ +L+++ M E
Sbjct: 347 VDSIKYLAIDETDRMLEKGHFQELQQLLEKINMNEKKM---------------------- 384
Query: 394 MTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPS--IKRLQDLLNIKSP 449
+ RQTFVFSATLT H + L KK + K+ K P+ ++++ +L+ IK+P
Sbjct: 385 -----EERQTFVFSATLTMVHDIPEYLEKKKRKHTKSKIQKLTPAQKLQKIMELVGIKNP 439
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
KI+D+T+K G LTE +I C D KD YLYYF+ ++ GRTL
Sbjct: 440 KIIDVTKKSGTATNLTECRIACTIDHKDYYLYYFLKRYAGRTL----------------- 482
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
+ C NSI VKRL LL +L C
Sbjct: 483 ---------------VFC------------------------NSIGCVKRLATLLGILDC 503
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
PLPLHASM QRQRLKNL+RF+ N +L+ATDVAARGLDIP +EHVIHY VPRTSE Y+
Sbjct: 504 KPLPLHASMQQRQRLKNLERFQADENGLLIATDVAARGLDIPNVEHVIHYQVPRTSESYV 563
Query: 630 HRSGRTARANNEGLTVVLIESDE 652
HRSGRTARA +G+TV+++E E
Sbjct: 564 HRSGRTARAQKDGITVLMMEPSE 586
Score = 83.6 bits (205), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
L +++ +PL+ M ++ +L F DE+ L + I +E I P
Sbjct: 498 LGILDCKPLPLHASM-QQRQRLKNLERFQADENGLLIATDVAARGLDIPNVEHVIHYQVP 556
Query: 1238 ---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
++++HRSGRTARA +G+T++++E E Y K+ +L + DLP FP+ + +L
Sbjct: 557 RTSESYVHRSGRTARAQKDGITVLMMEPSEKEYYSKLCKTLGRTEDLPMFPVVDRLLIAT 616
Query: 1295 KKRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIII--DDENL 1336
K+R+++A+ I+ LE K ++ N WL KA ++MD+++ D+ENL
Sbjct: 617 KERVEIAREIDKLELKCRRDNSKKGWLRKAVEEMDLVLEEDEENL 661
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 17/145 (11%)
Query: 1340 NQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 1399
N + + +++N ALIL PTRELAIQ+++H+ A KYT +KVA V+GGM+ KQ RI
Sbjct: 259 NNVKMSKTQNYTKPLYALILTPTRELAIQIKDHLTKAVKYTDIKVAVVLGGMAAVKQERI 318
Query: 1400 LNKCPHILVATPGAL---------SLKRIDLAKSIEYLESKIKKNRPDNWLEKAA-KDMD 1449
L+K P I++ATPG L L ++D SI+YL + D LEK +++
Sbjct: 319 LSKGPEIVIATPGRLWELIQQGNPHLSKVD---SIKYLAI----DETDRMLEKGHFQELQ 371
Query: 1450 IIIDDENLIQPKANSRENALMSKAL 1474
+++ N+ + K R+ + S L
Sbjct: 372 QLLEKINMNEKKMEERQTFVFSATL 396
Score = 41.2 bits (95), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 11/85 (12%)
Query: 1406 ILVATPGALSLKRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIII--DDENLIQPKA 1462
+L+AT +R+++A+ I+ LE K ++ N WL KA ++MD+++ D+ENL A
Sbjct: 612 LLIATK-----ERVEIAREIDKLELKCRRDNSKKGWLRKAVEEMDLVLEEDEENL---AA 663
Query: 1463 NSRENALMSKALVSKRKELQSLLGK 1487
E A + L K+ +L SL+ K
Sbjct: 664 EMEETATLKYQLKKKKHQLASLMSK 688
>gi|307201303|gb|EFN81150.1| ATP-dependent RNA helicase DDX24 [Harpegnathos saltator]
Length = 640
Score = 471 bits (1213), Expect = e-129, Method: Compositional matrix adjust.
Identities = 246/506 (48%), Positives = 336/506 (66%), Gaps = 29/506 (5%)
Query: 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
A W +P II+AL + F TPT IQ+ +P+ALL +DI+GAAETGSGKTLAFGIPI
Sbjct: 17 AAWSSMGVPSVIIKALADQNFYTPTIIQAKTLPAALLGYRDILGAAETGSGKTLAFGIPI 76
Query: 828 LTGIV-----------NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF------- 869
+ GI+ ++ T E+E + E E E+ + E N +E+
Sbjct: 77 IKGILELKSQKAKTIADEKSTETSENEERTCHEVETEDNSTNSDSEDENLSEYENCINVI 136
Query: 870 -VKKTRN----KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 924
+ +N LYALILAPTREL +Q++ H+ A KYT +K+A V GG++ KQ R+LN
Sbjct: 137 ELDNCQNIPSKPLYALILAPTRELVVQIKQHLTQAVKYTDIKIAAVFGGLAAVKQERLLN 196
Query: 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 984
+ P I++ATPGRLWE IQ G+ HL+++ I +L IDETDRM+E GHF EL +IL ++ +
Sbjct: 197 QGPEIVIATPGRLWELIQQGNPHLSQVDSIRFLAIDETDRMLEKGHFQELHDILQKINVD 256
Query: 985 ETS-QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPS--IKRLQDLLNIKSPK 1039
+ RQTFVFSATLT H L + L KK + K+ K P ++++ LL IK+PK
Sbjct: 257 PIKLKKRQTFVFSATLTMVHDLPDYLEKKKKRHFKSKICKLTPGQKLQKIIHLLQIKNPK 316
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 1099
+VDLT++ G +LTE ++ C D KD YLYYF+ +H GRTLVFCNSI VKRL L +
Sbjct: 317 VVDLTKESGTADSLTECRMTCTIDHKDYYLYYFLKRHNGRTLVFCNSIGCVKRLATLFGI 376
Query: 1100 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
L+C PLPLHA+M QRQRLKNL+RF+ N +L+ATDVAARGLDIP IEHVIHY VPRTSE
Sbjct: 377 LECRPLPLHANMQQRQRLKNLERFQADENGLLIATDVAARGLDIPNIEHVIHYQVPRTSE 436
Query: 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1219
Y+HRSGRTARA EG+T++++E E Y K+ +L + DLP FP+ + +L IK+R+
Sbjct: 437 SYVHRSGRTARAQKEGITVLMMEPSEKENYSKLCKTLGRTEDLPTFPVVDRLLIAIKERV 496
Query: 1220 DLAKSIEYLESKIKK-NRPDNWLHRS 1244
++A+ I+ LE K ++ N +W+ ++
Sbjct: 497 NIAREIDKLELKCRRENNQKSWMRKA 522
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 229/526 (43%), Positives = 300/526 (57%), Gaps = 104/526 (19%)
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
A W +P II+AL + F TPT IQ+ +P+ALL +DI+GAAETGSGKTLAFGIPI
Sbjct: 17 AAWSSMGVPSVIIKALADQNFYTPTIIQAKTLPAALLGYRDILGAAETGSGKTLAFGIPI 76
Query: 211 LTGIV-----------NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF------- 252
+ GI+ ++ T E+E + E E E+ + E N +E+
Sbjct: 77 IKGILELKSQKAKTIADEKSTETSENEERTCHEVETEDNSTNSDSEDENLSEYENCINVI 136
Query: 253 -VKKTRN----KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307
+ +N LYALILAPTREL +Q++ H+ A KYT +K+A V GG++ KQ R+LN
Sbjct: 137 ELDNCQNIPSKPLYALILAPTRELVVQIKQHLTQAVKYTDIKIAAVFGGLAAVKQERLLN 196
Query: 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 367
+ P I++ATPGRLWE IQ G+ HL+++ I +L IDETDRM+E G
Sbjct: 197 QGPEIVIATPGRLWELIQQGNPHLSQVDSIRFLAIDETDRMLEKG--------------- 241
Query: 368 ETSQPRQTMIESGHFPELKNILDRVTMTETS-QPRQTFVFSATLTHSLKNSLNLKKGQSK 426
HF EL +IL ++ + + RQTFVFSATLT
Sbjct: 242 -------------HFQELHDILQKINVDPIKLKKRQTFVFSATLTM-------------- 274
Query: 427 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 486
+ DL + + K +CK
Sbjct: 275 ------------------------VHDLPDYLEKKKKRHFKSKICKLT------------ 298
Query: 487 HPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 546
PG+ L ++I LL IK+PK+VDLT++ G +LTE ++ C D KD YLYYF+ +H GR
Sbjct: 299 -PGQKL-QKIIHLLQIKNPKVVDLTKESGTADSLTECRMTCTIDHKDYYLYYFLKRHNGR 356
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
TLVFCNSI VKRL L +L+C PLPLHA+M QRQRLKNL+RF+ N +L+ATDVAAR
Sbjct: 357 TLVFCNSIGCVKRLATLFGILECRPLPLHANMQQRQRLKNLERFQADENGLLIATDVAAR 416
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
GLDIP IEHVIHY VPRTSE Y+HRSGRTARA EG+TV+++E E
Sbjct: 417 GLDIPNIEHVIHYQVPRTSESYVHRSGRTARAQKEGITVLMMEPSE 462
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP-- 1237
++E +PL+ M ++ +L F DE+ L + I +E I P
Sbjct: 376 ILECRPLPLHANM-QQRQRLKNLERFQADENGLLIATDVAARGLDIPNIEHVIHYQVPRT 434
Query: 1238 -DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
++++HRSGRTARA EG+T++++E E Y K+ +L + DLP FP+ + +L IK+
Sbjct: 435 SESYVHRSGRTARAQKEGITVLMMEPSEKENYSKLCKTLGRTEDLPTFPVVDRLLIAIKE 494
Query: 1297 RIDLAKSIEYLESKIKK-NRPDNWLEKA 1323
R+++A+ I+ LE K ++ N +W+ KA
Sbjct: 495 RVNIAREIDKLELKCRRENNQKSWMRKA 522
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALILAPTREL +Q++ H+ A KYT +K+A V GG++ KQ R+LN+ P I++ATPG L
Sbjct: 151 ALILAPTRELVVQIKQHLTQAVKYTDIKIAAVFGGLAAVKQERLLNQGPEIVIATPGRL 209
>gi|427788943|gb|JAA59923.1| Putative gamete proteinration [Rhipicephalus pulchellus]
Length = 691
Score = 471 bits (1212), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/489 (49%), Positives = 328/489 (67%), Gaps = 41/489 (8%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M+ W+ ++PE ++RAL + F PT+IQ+ +P+A+ DI+GAAETGSGKTLAFGIP
Sbjct: 119 MSAWLNCHVPEPVLRALAELNFTEPTEIQAQTLPAAIRDHLDIMGAAETGSGKTLAFGIP 178
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
+L I+ E S L E + L+ AL+L PTR
Sbjct: 179 LLHHIM----------ERKSRLSAEGDTKAMPLQ------------------ALVLTPTR 210
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELAIQV HI D KYT V++ VVGG+S EKQLR+L + P I+VATPGRLWE + G
Sbjct: 211 ELAIQVTRHIQDVAKYTNVRIVNVVGGLSAEKQLRLLKRKPEIVVATPGRLWELVDQGAP 270
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM----TETSQPRQTFVFSATLT-- 1000
H++++ K+ YLVIDE DRM+E GHF +L +LD + E + RQ FVFSATLT
Sbjct: 271 HVSDVSKVRYLVIDEADRMVEKGHFEDLTRLLDIMNAPSEDGEEKRRRQNFVFSATLTMV 330
Query: 1001 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKIL 1059
H L L K + K +K+S+ + ++ L + I S PK+VDLT K+G + L ES+I+
Sbjct: 331 HDLPRRL---KNKPKKRKLSEKE-KVEELMHTIGISSKPKVVDLTRKLGTAELLCESRIV 386
Query: 1060 CKH-DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
C +KDS LYYF+L HPGRTLVFCNSI SV+RL +L +L+ SPLPLHASM QRQRLK
Sbjct: 387 CPSVGDKDSRLYYFLLSHPGRTLVFCNSIDSVRRLVSVLDLLQRSPLPLHASMQQRQRLK 446
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
NLDRF++ + +LLATDVAARGLDI GI+HVIH+ VPRT+E+Y+HRSGRTARA + GL++
Sbjct: 447 NLDRFKNNPSGLLLATDVAARGLDIQGIQHVIHFQVPRTAEVYVHRSGRTARAKSGGLSV 506
Query: 1179 VLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRP 1237
+L+E E+ LY K+ +L + DLPDFPID S+L ++KR+DLA+ +E ++++ N
Sbjct: 507 MLMEPGELHLYRKICKTLNRNEDLPDFPIDLSMLKAVQKRVDLARKLEAESHRVRRTNYE 566
Query: 1238 DNWLHRSGR 1246
DNWL R+ +
Sbjct: 567 DNWLQRAAK 575
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 223/517 (43%), Positives = 291/517 (56%), Gaps = 122/517 (23%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M+ W+ ++PE ++RAL + F PT+IQ+ +P+A+ DI+GAAETGSGKTLAFGIP
Sbjct: 119 MSAWLNCHVPEPVLRALAELNFTEPTEIQAQTLPAAIRDHLDIMGAAETGSGKTLAFGIP 178
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
+L I+ E S L E + L+ AL+L PTR
Sbjct: 179 LLHHIM----------ERKSRLSAEGDTKAMPLQ------------------ALVLTPTR 210
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELAIQV HI D KYT V++ VVGG+S EKQLR+L + P I+VATPGRLWE + G
Sbjct: 211 ELAIQVTRHIQDVAKYTNVRIVNVVGGLSAEKQLRLLKRKPEIVVATPGRLWELVDQGAP 270
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
H++++ K+ YLVIDE DRM+E G HF +L +L
Sbjct: 271 HVSDVSKVRYLVIDEADRMVEKG----------------------------HFEDLTRLL 302
Query: 390 DRVTM----TETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL 443
D + E + RQ FVFSATLT H L L K + K +K+S+ +
Sbjct: 303 DIMNAPSEDGEEKRRRQNFVFSATLTMVHDLPRRL---KNKPKKRKLSEKE--------- 350
Query: 444 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
K+ +L IGI+
Sbjct: 351 ------KVEELMHTIGISS----------------------------------------- 363
Query: 504 SPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 562
PK+VDLT K+G + L ES+I+C +KDS LYYF+L HPGRTLVFCNSI SV+RL
Sbjct: 364 KPKVVDLTRKLGTAELLCESRIVCPSVGDKDSRLYYFLLSHPGRTLVFCNSIDSVRRLVS 423
Query: 563 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 622
+L +L+ SPLPLHASM QRQRLKNLDRF++ + +LLATDVAARGLDI GI+HVIH+ VP
Sbjct: 424 VLDLLQRSPLPLHASMQQRQRLKNLDRFKNNPSGLLLATDVAARGLDIQGIQHVIHFQVP 483
Query: 623 RTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659
RT+E+Y+HRSGRTARA + GL+V+L+E E+ L K
Sbjct: 484 RTAEVYVHRSGRTARAKSGGLSVMLMEPGELHLYRKI 520
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA + GL+++L+E E+ LY K+ +L + DLPDFPID S+L ++KR+D
Sbjct: 489 YVHRSGRTARAKSGGLSVMLMEPGELHLYRKICKTLNRNEDLPDFPIDLSMLKAVQKRVD 548
Query: 1300 LAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDENL 1336
LA+ +E ++++ N DNWL++AAK+M+I +D+ L
Sbjct: 549 LARKLEAESHRVRRTNYEDNWLQRAAKEMEIDLDERML 586
Score = 81.6 bits (200), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELAIQV HI D KYT V++ VVGG+S EKQLR+L + P I+VATPG L
Sbjct: 203 ALVLTPTRELAIQVTRHIQDVAKYTNVRIVNVVGGLSAEKQLRLLKRKPEIVVATPGRL 261
Score = 40.8 bits (94), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 1417 KRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDENL 1457
KR+DLA+ +E ++++ N DNWL++AAK+M+I +D+ L
Sbjct: 545 KRVDLARKLEAESHRVRRTNYEDNWLQRAAKEMEIDLDERML 586
>gi|328778593|ref|XP_001122313.2| PREDICTED: ATP-dependent RNA helicase DDX24-like [Apis mellifera]
Length = 747
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 250/518 (48%), Positives = 348/518 (67%), Gaps = 24/518 (4%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
N+ E + S N+ + +W + II+AL + F PT IQ++ +P A+L +D
Sbjct: 119 NQFFNECNESKNDMYDIDAQQWQILGVSTPIIKALKDQQFYQPTPIQALTLPPAILGHRD 178
Query: 809 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE----------- 857
I+GAAETGSGKTLAFGIPI+ GI+ +L+N + D+ + E+E +++E
Sbjct: 179 ILGAAETGSGKTLAFGIPIINGIL-ELKN-KQSDQINIKSEKERNKIIENKGWICSENKT 236
Query: 858 -ELEEESANTT--EFVKKT--RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 912
E++ S+ + E + K LYALIL PTRELAIQ+++H+ A KY +K+A V+G
Sbjct: 237 IEIDNSSSESDYEEDIDKNYMEKPLYALILTPTRELAIQIKDHLTKAAKYVDIKIAVVLG 296
Query: 913 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
GM+ KQ RIL+K P I++ATPGRLWE IQ G+ HL ++ + YLVIDETDRM+E GHF
Sbjct: 297 GMAAVKQERILSKGPEIVIATPGRLWELIQYGNPHLCKVDSVKYLVIDETDRMLEKGHFQ 356
Query: 973 ELKNILDRVTMTETS-QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPS--IK 1027
EL+ +L+++ E + RQTFVFSATLT H + L KK + K+ K PS ++
Sbjct: 357 ELQQLLEKINTNEKRLRERQTFVFSATLTMVHDIPEYLQKKKRKHIKSKIKKLTPSQKLE 416
Query: 1028 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 1087
++ +L+ IK+PKI+D+T++ GIT LTE +I C D KD YLYYF+ ++ GRTLVFCNSI
Sbjct: 417 KIMELVGIKNPKIIDVTKESGITANLTECRIACTIDHKDYYLYYFLKRYTGRTLVFCNSI 476
Query: 1088 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 1147
VKRL+ L +L C PLPLHASM QRQRLKNL+RF+ N +L+ATDVAARGLDIP IE
Sbjct: 477 GCVKRLSTLFGILDCKPLPLHASMQQRQRLKNLERFQTDENGLLIATDVAARGLDIPNIE 536
Query: 1148 HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPI 1207
HVIHY VPRTSE Y+HRSGRTARA G+T++++E E Y K+ +L + DLP FP+
Sbjct: 537 HVIHYQVPRTSESYVHRSGRTARAEKNGITVLMMEPSEKQYYSKLCKTLGRTEDLPMFPV 596
Query: 1208 DESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHRS 1244
+ +L +K+R+D+A+ I+ LE K ++ N WL ++
Sbjct: 597 VDKLLIAVKERVDIAREIDKLELKCRRDNSQKGWLRKA 634
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 229/541 (42%), Positives = 312/541 (57%), Gaps = 105/541 (19%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
N+ E + S N+ + +W + II+AL + F PT IQ++ +P A+L +D
Sbjct: 119 NQFFNECNESKNDMYDIDAQQWQILGVSTPIIKALKDQQFYQPTPIQALTLPPAILGHRD 178
Query: 192 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE----------- 240
I+GAAETGSGKTLAFGIPI+ GI+ +L+N + D+ + E+E +++E
Sbjct: 179 ILGAAETGSGKTLAFGIPIINGIL-ELKN-KQSDQINIKSEKERNKIIENKGWICSENKT 236
Query: 241 -ELEEESANTT--EFVKKT--RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 295
E++ S+ + E + K LYALIL PTRELAIQ+++H+ A KY +K+A V+G
Sbjct: 237 IEIDNSSSESDYEEDIDKNYMEKPLYALILTPTRELAIQIKDHLTKAAKYVDIKIAVVLG 296
Query: 296 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 355
GM+ KQ RIL+K P I++ATPGRLWE IQ G+ HL ++ + YLVIDETDRM+E GHF
Sbjct: 297 GMAAVKQERILSKGPEIVIATPGRLWELIQYGNPHLCKVDSVKYLVIDETDRMLEKGHFQ 356
Query: 356 ELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HS 413
EL+ +L+++ E + + RQTFVFSATLT H
Sbjct: 357 ELQQLLEKINTNE---------------------------KRLRERQTFVFSATLTMVHD 389
Query: 414 LKNSLNLKKGQSKSKKVSKGDPS--IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471
+ L KK + K+ K PS ++++ +L+ IK+PKI+D+T++ GIT LTE +I C
Sbjct: 390 IPEYLQKKKRKHIKSKIKKLTPSQKLEKIMELVGIKNPKIIDVTKESGITANLTECRIAC 449
Query: 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 531
D KD YLYYF+ ++ GRTL + C
Sbjct: 450 TIDHKDYYLYYFLKRYTGRTL--------------------------------VFC---- 473
Query: 532 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 591
NSI VKRL+ L +L C PLPLHASM QRQRLKNL+RF+
Sbjct: 474 --------------------NSIGCVKRLSTLFGILDCKPLPLHASMQQRQRLKNLERFQ 513
Query: 592 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651
N +L+ATDVAARGLDIP IEHVIHY VPRTSE Y+HRSGRTARA G+TV+++E
Sbjct: 514 TDENGLLIATDVAARGLDIPNIEHVIHYQVPRTSESYVHRSGRTARAEKNGITVLMMEPS 573
Query: 652 E 652
E
Sbjct: 574 E 574
Score = 81.3 bits (199), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 5/155 (3%)
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP-- 1237
+++ +PL+ M ++ +L F DE+ L + I +E I P
Sbjct: 488 ILDCKPLPLHASM-QQRQRLKNLERFQTDENGLLIATDVAARGLDIPNIEHVIHYQVPRT 546
Query: 1238 -DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
++++HRSGRTARA G+T++++E E Y K+ +L + DLP FP+ + +L +K+
Sbjct: 547 SESYVHRSGRTARAEKNGITVLMMEPSEKQYYSKLCKTLGRTEDLPMFPVVDKLLIAVKE 606
Query: 1297 RIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDII 1330
R+D+A+ I+ LE K ++ N WL KA +DMD++
Sbjct: 607 RVDIAREIDKLELKCRRDNSQKGWLRKAIEDMDLV 641
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELAIQ+++H+ A KY +K+A V+GGM+ KQ RIL+K P I++ATPG L
Sbjct: 263 ALILTPTRELAIQIKDHLTKAAKYVDIKIAVVLGGMAAVKQERILSKGPEIVIATPGRL 321
>gi|346471193|gb|AEO35441.1| hypothetical protein [Amblyomma maculatum]
Length = 684
Score = 468 bits (1203), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/492 (48%), Positives = 331/492 (67%), Gaps = 47/492 (9%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M+ W+ +PE ++RAL + F PT+IQ+ +P+A+ DI+GAAETGSGKTLAFGIP
Sbjct: 115 MSAWLNCYVPEQVLRALAELKFTEPTEIQAQTLPAAIRDHMDIMGAAETGSGKTLAFGIP 174
Query: 827 ILTGIV-NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
+L I+ KL P EE A + + L AL+L PT
Sbjct: 175 LLHHIMERKLRQP----------EECASQAM-------------------PLQALVLTPT 205
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
RELAIQV H+ D KYT V++ V+GG+S EKQLR+L + P I+VATPGRLWE + G
Sbjct: 206 RELAIQVTRHLQDVAKYTNVRIVNVIGGLSAEKQLRLLKRKPEIVVATPGRLWELVDQGA 265
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP------RQTFVFSATL 999
H++++ K+ YLVIDE DRM+E GHF +L +L+ M S+ RQ FVFSATL
Sbjct: 266 PHVSDVSKVRYLVIDEADRMVEKGHFEDLTRLLE--VMNAPSEEGAEKRRRQNFVFSATL 323
Query: 1000 T--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTES 1056
T H + + K + K K+++ + ++ L + I S PK+VDLT K+G +TL ES
Sbjct: 324 TMVHDMPKRM---KNKHKKHKLTEKE-KVEELMCTIGISSKPKVVDLTRKLGTAETLCES 379
Query: 1057 KILCKH-DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
+I+C ++KDS LYYF+L HPGRTLVFCNSI SV+RL +L +L+ PLPLHASM QRQ
Sbjct: 380 RIVCPSVEDKDSRLYYFLLAHPGRTLVFCNSIDSVRRLVSVLDLLQRCPLPLHASMQQRQ 439
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
RLKNLDRF++ + +LLATDVAARGLDI GI+HVIH+ VPRT+E+Y+HRSGRTARA ++G
Sbjct: 440 RLKNLDRFKNNPSGLLLATDVAARGLDIQGIQHVIHFQVPRTAEVYVHRSGRTARAKSDG 499
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK- 1234
L+++L+E E+ LY K+ +L + DLPDFP+D+S+L ++KR+DLA+ +E ++++
Sbjct: 500 LSVMLMEPRELHLYRKICRTLNRNEDLPDFPVDQSMLRAVQKRVDLARKLEAESHRVRRS 559
Query: 1235 NRPDNWLHRSGR 1246
N DNWL R+ +
Sbjct: 560 NYEDNWLQRAAK 571
Score = 319 bits (818), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 202/517 (39%), Positives = 277/517 (53%), Gaps = 122/517 (23%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M+ W+ +PE ++RAL + F PT+IQ+ +P+A+ DI+GAAETGSGKTLAFGIP
Sbjct: 115 MSAWLNCYVPEQVLRALAELKFTEPTEIQAQTLPAAIRDHMDIMGAAETGSGKTLAFGIP 174
Query: 210 ILTGIV-NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
+L I+ KL P EE A + + L AL+L PT
Sbjct: 175 LLHHIMERKLRQP----------EECASQAM-------------------PLQALVLTPT 205
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
RELAIQV H+ D KYT V++ V+GG+S EKQLR+L + P I+VATPGRLWE + G
Sbjct: 206 RELAIQVTRHLQDVAKYTNVRIVNVIGGLSAEKQLRLLKRKPEIVVATPGRLWELVDQGA 265
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
H++++ K+ YLVIDE DRM+E GHF +L +L+ M S E G
Sbjct: 266 PHVSDVSKVRYLVIDEADRMVEKGHFEDLTRLLE--VMNAPS-------EEG-------- 308
Query: 389 LDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 446
+ RQ FVFSATLT H + + K + K K+++ + ++ L + I
Sbjct: 309 -------AEKRRRQNFVFSATLTMVHDMPKRM---KNKHKKHKLTEKE-KVEELMCTIGI 357
Query: 447 KS-PKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTL--CEEIQDLLNI 502
S PK+VDLT K+G +TL ES+I+C ++KDS LYYF+L HPGRTL C I + +
Sbjct: 358 SSKPKVVDLTRKLGTAETLCESRIVCPSVEDKDSRLYYFLLAHPGRTLVFCNSIDSVRRL 417
Query: 503 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 562
S ++DL ++ L S+ +RL
Sbjct: 418 VS--VLDLLQRC--------------------------------PLPLHASMQQRQRLKN 443
Query: 563 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 622
L R KN + +LLATDVAARGLDI GI+HVIH+ VP
Sbjct: 444 L------------------DRFKN------NPSGLLLATDVAARGLDIQGIQHVIHFQVP 479
Query: 623 RTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659
RT+E+Y+HRSGRTARA ++GL+V+L+E E+ L K
Sbjct: 480 RTAEVYVHRSGRTARAKSDGLSVMLMEPRELHLYRKI 516
Score = 102 bits (255), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA ++GL+++L+E E+ LY K+ +L + DLPDFP+D+S+L ++KR+D
Sbjct: 485 YVHRSGRTARAKSDGLSVMLMEPRELHLYRKICRTLNRNEDLPDFPVDQSMLRAVQKRVD 544
Query: 1300 LAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDENL 1336
LA+ +E ++++ N DNWL++AAK+M+I +D+ L
Sbjct: 545 LARKLEAESHRVRRSNYEDNWLQRAAKEMEIDLDERML 582
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELAIQV H+ D KYT V++ V+GG+S EKQLR+L + P I+VATPG L
Sbjct: 199 ALVLTPTRELAIQVTRHLQDVAKYTNVRIVNVIGGLSAEKQLRLLKRKPEIVVATPGRL 257
Score = 41.2 bits (95), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 1417 KRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDENL 1457
KR+DLA+ +E ++++ N DNWL++AAK+M+I +D+ L
Sbjct: 541 KRVDLARKLEAESHRVRRSNYEDNWLQRAAKEMEIDLDERML 582
>gi|260829397|ref|XP_002609648.1| hypothetical protein BRAFLDRAFT_123567 [Branchiostoma floridae]
gi|229295010|gb|EEN65658.1| hypothetical protein BRAFLDRAFT_123567 [Branchiostoma floridae]
Length = 844
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/509 (47%), Positives = 324/509 (63%), Gaps = 39/509 (7%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M W +P+ ++R L +GF PT IQ+ +P A+ A KD+VGAAETGSGKTLAFGIP
Sbjct: 274 MTSWTPLFVPDVVLRGLADQGFTQPTPIQAQTIPQAIQAHKDVVGAAETGSGKTLAFGIP 333
Query: 827 ILTGIVNKLENPTEEDENDSGLE-EEAEEV-----------------------------L 856
IL I+ E + +E D G + EE E L
Sbjct: 334 ILHRILEWKERNLQSEEGDLGNKNEEVPEDAADDDDDQEMESGGLGCVHVEDDITLPPEL 393
Query: 857 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST 916
E L+E + +K + L AL+L PTRELA+QV NHI A KYT VKVA +VGGM+
Sbjct: 394 EALQEAPPLSAPTPQKVVSPLLALVLTPTRELAVQVANHIKAAAKYTNVKVAVLVGGMAP 453
Query: 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 976
+KQ R+L++ P I+VATPGRLWE ++ H HL++L ++ LVIDE DRM+E GHF EL N
Sbjct: 454 QKQKRVLDRQPEIIVATPGRLWEMVEQSHPHLSDLNQLQCLVIDEADRMVEKGHFAELGN 513
Query: 977 ILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 1034
+LD++ + ++ RQTFVFSATLT HS ++ K K D + +L D +
Sbjct: 514 LLDKINGEDRNRRRQTFVFSATLTMVHS-----GPQRKIMKKKFKMDKDKKLGQLMDRVG 568
Query: 1035 IKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 1093
I+S P +VDL+ + G TLTE++I C +EKD YLYYF+LQ+PGRTLVF NSI ++RL
Sbjct: 569 IRSKPLVVDLSRQQGTVDTLTEARITCSTEEKDIYLYYFLLQYPGRTLVFANSIDCIRRL 628
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
T LL +L+ SPLPLHA+M+Q+QRLKNL+RF N +LLATDVAARGLDIP ++HVIHY
Sbjct: 629 TSLLGLLQKSPLPLHANMHQKQRLKNLERFSANENGLLLATDVAARGLDIPDVQHVIHYQ 688
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLS 1213
VPRTSE Y+HRSGRTARA EGLTL+L ++ Y ++ +L K DLP FP + L+
Sbjct: 689 VPRTSETYVHRSGRTARAQKEGLTLLLTGPEDAQYYKRICKTLGKDEDLPVFPTEPQYLA 748
Query: 1214 LIKKRIDLAKSIEYLESK-IKKNRPDNWL 1241
+K R+ + I+ E + +KK ++W
Sbjct: 749 AVKARVAAGRRIDVEEHRYMKKKHHNDWF 777
Score = 269 bits (687), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 212/376 (56%), Gaps = 66/376 (17%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M W +P+ ++R L +GF PT IQ+ +P A+ A KD+VGAAETGSGKTLAFGIP
Sbjct: 274 MTSWTPLFVPDVVLRGLADQGFTQPTPIQAQTIPQAIQAHKDVVGAAETGSGKTLAFGIP 333
Query: 210 ILTGIVNKLENPTEEDENDSGLE-EEAEEV-----------------------------L 239
IL I+ E + +E D G + EE E L
Sbjct: 334 ILHRILEWKERNLQSEEGDLGNKNEEVPEDAADDDDDQEMESGGLGCVHVEDDITLPPEL 393
Query: 240 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST 299
E L+E + +K + L AL+L PTRELA+QV NHI A KYT VKVA +VGGM+
Sbjct: 394 EALQEAPPLSAPTPQKVVSPLLALVLTPTRELAVQVANHIKAAAKYTNVKVAVLVGGMAP 453
Query: 300 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 359
+KQ R+L++ P I+VATPGRLWE ++ H HL++L ++ LVIDE DRM+E GHF EL N
Sbjct: 454 QKQKRVLDRQPEIIVATPGRLWEMVEQSHPHLSDLNQLQCLVIDEADRMVEKGHFAELGN 513
Query: 360 ILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNS 417
+LD++ N DR ++ RQTFVFSATLT HS
Sbjct: 514 LLDKI----------------------NGEDR------NRRRQTFVFSATLTMVHS---- 541
Query: 418 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEK 476
++ K K D + +L D + I+S P +VDL+ + G TLTE++I C +EK
Sbjct: 542 -GPQRKIMKKKFKMDKDKKLGQLMDRVGIRSKPLVVDLSRQQGTVDTLTEARITCSTEEK 600
Query: 477 DSYLYYFILQHPGRTL 492
D YLYYF+LQ+PGRTL
Sbjct: 601 DIYLYYFLLQYPGRTL 616
Score = 216 bits (549), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 124/154 (80%), Gaps = 1/154 (0%)
Query: 495 EIQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 553
++ D + I+S P +VDL+ + G TLTE++I C +EKD YLYYF+LQ+PGRTLVF NS
Sbjct: 562 QLMDRVGIRSKPLVVDLSRQQGTVDTLTEARITCSTEEKDIYLYYFLLQYPGRTLVFANS 621
Query: 554 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613
I ++RLT LL +L+ SPLPLHA+M+Q+QRLKNL+RF N +LLATDVAARGLDIP +
Sbjct: 622 IDCIRRLTSLLGLLQKSPLPLHANMHQKQRLKNLERFSANENGLLLATDVAARGLDIPDV 681
Query: 614 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
+HVIHY VPRTSE Y+HRSGRTARA EGLT++L
Sbjct: 682 QHVIHYQVPRTSETYVHRSGRTARAQKEGLTLLL 715
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 47/59 (79%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA+QV NHI A KYT VKVA +VGGM+ +KQ R+L++ P I+VATPG L
Sbjct: 416 ALVLTPTRELAVQVANHIKAAAKYTNVKVAVLVGGMAPQKQKRVLDRQPEIIVATPGRL 474
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
L L++ +PL+ M K +L F +E+ L L I ++ I P
Sbjct: 632 LGLLQKSPLPLHANMHQKQRLK-NLERFSANENGLLLATDVAARGLDIPDVQHVIHYQVP 690
Query: 1238 ---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
+ ++HRSGRTARA EGLTL+L ++ Y ++ +L K DLP FP + L+ +
Sbjct: 691 RTSETYVHRSGRTARAQKEGLTLLLTGPEDAQYYKRICKTLGKDEDLPVFPTEPQYLAAV 750
Query: 1295 KKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
K R+ + I+ E + +KK ++W + AK+MDI +D++ ++
Sbjct: 751 KARVAAGRRIDVEEHRYMKKKHHNDWFLQQAKEMDIELDEDEVLH 795
>gi|380015023|ref|XP_003691511.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX24-like
[Apis florea]
Length = 778
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 250/553 (45%), Positives = 350/553 (63%), Gaps = 64/553 (11%)
Query: 753 LEVDTSNNEDMF-------------VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVM 799
L+++++N+ F + +W + II+AL + F PT IQ++ +
Sbjct: 116 LDINSNNDNQFFMNECNENKNYIYDIDAQQWQILGVSTPIIKALKDQQFYQPTPIQALTL 175
Query: 800 PSALLARKDIVGAAETGSGKTLAFGIPILTGIV-------NKLENPTEEDEN-------- 844
P+A+L +DI+GAAETGSGKTLAFGIPI+ GI+ ++L +E+++N
Sbjct: 176 PAAILGHRDILGAAETGSGKTLAFGIPIINGILELKNKQCDQLNVKSEKEKNKIIENKGW 235
Query: 845 -----------DSGLEEEAEEVLEELEEES--------------ANTTEFVKKTRNKLYA 879
+S E + EE ++ + E S NT +++K LYA
Sbjct: 236 ICSENKIVEIDNSSSESDYEEDIDSVNENSIGCVRVINNIKFNETNTENYMEKP---LYA 292
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LIL PTRELAIQ+++H+ A KY +K+A V+GGM+ KQ RIL+K P I++ATPGRLWE
Sbjct: 293 LILTPTRELAIQIKDHLTKAAKYVDIKIAVVLGGMAAVKQERILSKGPEIVIATPGRLWE 352
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS-QPRQTFVFSAT 998
IQ G+ HL ++ I YLVIDETDRM+E GHF EL+ +L+++ E + RQTFVFSAT
Sbjct: 353 LIQYGNSHLCKVDSIKYLVIDETDRMLEKGHFQELQQLLEKINTNEKRLRERQTFVFSAT 412
Query: 999 LT--HSLKNSLNLKKGQSKSKKVSKGDPS--IKRLQDLLNIKSPKIVDLTEKIGITKTLT 1054
LT H + L KK + K+ K P ++++ +L+ IK+PKI+DLT+K GIT LT
Sbjct: 413 LTMVHDIPEYLXKKKRKHIKSKIKKLTPDQKLEKIMELVGIKNPKIIDLTKKSGITANLT 472
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
E +I C D KD YLYYF+ ++ GRTLVFCNSI VKRL+ L +L C PLPLHASM QR
Sbjct: 473 ECRIACTIDHKDYYLYYFLKRYTGRTLVFCNSIGCVKRLSTLFGILDCKPLPLHASMQQR 532
Query: 1115 QRLKNL--DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
QRLK +RF+ N +L+ATDVAARGLDIP IEHV+HY VPRTSE Y+HRSGRTARA
Sbjct: 533 QRLKKSXKNRFQTDENGLLIATDVAARGLDIPNIEHVVHYQVPRTSESYVHRSGRTARAE 592
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKI 1232
G+T++++E E Y K+ +L + DLP FP+ + +L +K+R+D+A+ I+ LE K
Sbjct: 593 KNGITVLMMEPSEKQYYSKLCKTLGRTEDLPMFPVIDKLLVAVKERVDIAREIDKLELKC 652
Query: 1233 KK-NRPDNWLHRS 1244
++ N WL ++
Sbjct: 653 RRDNSQKGWLRKA 665
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 229/576 (39%), Positives = 314/576 (54%), Gaps = 145/576 (25%)
Query: 136 LEVDTSNNEDMF-------------VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVM 182
L+++++N+ F + +W + II+AL + F PT IQ++ +
Sbjct: 116 LDINSNNDNQFFMNECNENKNYIYDIDAQQWQILGVSTPIIKALKDQQFYQPTPIQALTL 175
Query: 183 PSALLARKDIVGAAETGSGKTLAFGIPILTGIV-------NKLENPTEEDEN-------- 227
P+A+L +DI+GAAETGSGKTLAFGIPI+ GI+ ++L +E+++N
Sbjct: 176 PAAILGHRDILGAAETGSGKTLAFGIPIINGILELKNKQCDQLNVKSEKEKNKIIENKGW 235
Query: 228 -----------DSGLEEEAEEVLEELEEES--------------ANTTEFVKKTRNKLYA 262
+S E + EE ++ + E S NT +++K LYA
Sbjct: 236 ICSENKIVEIDNSSSESDYEEDIDSVNENSIGCVRVINNIKFNETNTENYMEKP---LYA 292
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LIL PTRELAIQ+++H+ A KY +K+A V+GGM+ KQ RIL+K P I++ATPGRLWE
Sbjct: 293 LILTPTRELAIQIKDHLTKAAKYVDIKIAVVLGGMAAVKQERILSKGPEIVIATPGRLWE 352
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
IQ G+ HL ++ I YLVIDETDRM+E GHF EL+ +L+++ E
Sbjct: 353 LIQYGNSHLCKVDSIKYLVIDETDRMLEKGHFQELQQLLEKINTNE-------------- 398
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPS--IK 438
+ + RQTFVFSATLT H + L KK + K+ K P ++
Sbjct: 399 -------------KRLRERQTFVFSATLTMVHDIPEYLXKKKRKHIKSKIKKLTPDQKLE 445
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
++ +L+ IK+PKI+DLT+K GIT LTE +I C D KD YLYYF+ ++ GRTL
Sbjct: 446 KIMELVGIKNPKIIDLTKKSGITANLTECRIACTIDHKDYYLYYFLKRYTGRTL------ 499
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
+ C NSI VK
Sbjct: 500 --------------------------VFC------------------------NSIGCVK 509
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNL--DRFRDQNNSILLATDVAARGLDIPGIEHV 616
RL+ L +L C PLPLHASM QRQRLK +RF+ N +L+ATDVAARGLDIP IEHV
Sbjct: 510 RLSTLFGILDCKPLPLHASMQQRQRLKKSXKNRFQTDENGLLIATDVAARGLDIPNIEHV 569
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+HY VPRTSE Y+HRSGRTARA G+TV+++E E
Sbjct: 570 VHYQVPRTSESYVHRSGRTARAEKNGITVLMMEPSE 605
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELAIQ+++H+ A KY +K+A V+GGM+ KQ RIL+K P I++ATPG L
Sbjct: 292 ALILTPTRELAIQIKDHLTKAAKYVDIKIAVVLGGMAAVKQERILSKGPEIVIATPGRL 350
Score = 77.4 bits (189), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
++++HRSGRTARA G+T++++E E Y K+ +L + DLP FP+ + +L +K+R
Sbjct: 579 ESYVHRSGRTARAEKNGITVLMMEPSEKQYYSKLCKTLGRTEDLPMFPVIDKLLVAVKER 638
Query: 1298 IDLAKSIEYLESKIKK-NRPDNWLEKAAKDM 1327
+D+A+ I+ LE K ++ N WL KA +DM
Sbjct: 639 VDIAREIDKLELKCRRDNSQKGWLRKAIEDM 669
>gi|157119653|ref|XP_001653437.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108875246|gb|EAT39471.1| AAEL008728-PA [Aedes aegypti]
Length = 813
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/485 (48%), Positives = 330/485 (68%), Gaps = 29/485 (5%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + E I+RAL KGF+TPT+IQ++ +P A++ ++D++GAAETGSGKTLAFGIP+L
Sbjct: 216 WTELGVSEPIVRALADKGFQTPTEIQTLSLPVAIMGKRDLLGAAETGSGKTLAFGIPLLE 275
Query: 830 GI----------VNKLEN--PTEEDENDSGLEEEAEEVLEELEEES-ANTTEFVKKTRNK 876
GI V K EN P EE++ + E LE + S +++ +++ K
Sbjct: 276 GIMKLKASEPYRVRKCENASPKEEEQREGHEMTPPPEELEYYPDPSNGDSSVMLQQNLEK 335
Query: 877 ---------LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
LYALIL PTRELA+Q+ +H+ KYT +K+A V GG++ KQ R+L KCP
Sbjct: 336 EEDPQLDKPLYALILTPTRELAVQINDHLKAITKYTDIKIATVFGGLAAVKQERMLKKCP 395
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE-T 986
I++ATPGRLWE IQ + HL ++ +I +LVIDETDRM+E GHF ELK +L+ + E
Sbjct: 396 EIVIATPGRLWELIQARNPHLCKVDEIRFLVIDETDRMLERGHFEELKQLLEMINNNEEA 455
Query: 987 SQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI---KSPKIV 1041
++ R+ ++FSATLT H L L K ++K ++K + + +RL +L+ I +PK+V
Sbjct: 456 TKLRRNYIFSATLTMDHDLPEHLVAKAKKNKKIHITK-ETTGQRLNNLVQIIGMTNPKVV 514
Query: 1042 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 1101
D+T++ G TL ES+ILCK ++KD YLYYF+ +HPGRTLVFCNSI VKRL L L
Sbjct: 515 DITQQHGTAHTLIESRILCKAEQKDYYLYYFLQRHPGRTLVFCNSIDCVKRLVSLFGYLN 574
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
C PL L SM QRQRLKNL+RF ++L+ATDVAARGLDIP ++HVIHY VP+T+E Y
Sbjct: 575 CDPLSLFGSMQQRQRLKNLERFTQNPAALLIATDVAARGLDIPNVDHVIHYQVPKTTENY 634
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDL 1221
+HRSGRTARA+ EG+T++LI ++E+ Y+K+ SL + DLP +P E ++ IK+R++L
Sbjct: 635 VHRSGRTARASKEGITVLLIGANEVSDYVKLNQSLGRTEDLPMYPTSERMMKQIKERVNL 694
Query: 1222 AKSIE 1226
A+ IE
Sbjct: 695 ARDIE 699
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 244/631 (38%), Positives = 351/631 (55%), Gaps = 140/631 (22%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + + E I+RAL KGF+TPT+IQ++ +P A++ ++D++GAAETGSGKTLAFGIP+L
Sbjct: 216 WTELGVSEPIVRALADKGFQTPTEIQTLSLPVAIMGKRDLLGAAETGSGKTLAFGIPLLE 275
Query: 213 GI----------VNKLEN--PTEEDENDSGLEEEAEEVLEELEEES-ANTTEFVKKTRNK 259
GI V K EN P EE++ + E LE + S +++ +++ K
Sbjct: 276 GIMKLKASEPYRVRKCENASPKEEEQREGHEMTPPPEELEYYPDPSNGDSSVMLQQNLEK 335
Query: 260 ---------LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
LYALIL PTRELA+Q+ +H+ KYT +K+A V GG++ KQ R+L KCP
Sbjct: 336 EEDPQLDKPLYALILTPTRELAVQINDHLKAITKYTDIKIATVFGGLAAVKQERMLKKCP 395
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
I++ATPGRLWE IQ + HL ++ +I +LVIDETDRM+E GHF ELK +L+ + E
Sbjct: 396 EIVIATPGRLWELIQARNPHLCKVDEIRFLVIDETDRMLERGHFEELKQLLEMINNNE-- 453
Query: 371 QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSK 428
E ++ R+ ++FSATLT H L L K ++K
Sbjct: 454 -------------------------EATKLRRNYIFSATLTMDHDLPEHLVAKAKKNKKI 488
Query: 429 KVSKGDPSIKRLQDLLNI---KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 485
++K + + +RL +L+ I +PK+VD+T++ G TL ES+ILCK ++KD YLYYF+
Sbjct: 489 HITK-ETTGQRLNNLVQIIGMTNPKVVDITQQHGTAHTLIESRILCKAEQKDYYLYYFLQ 547
Query: 486 QHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 545
+HPGRTL + C
Sbjct: 548 RHPGRTL--------------------------------VFC------------------ 557
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
NSI VKRL L L C PL L SM QRQRLKNL+RF ++L+ATDVAA
Sbjct: 558 ------NSIDCVKRLVSLFGYLNCDPLSLFGSMQQRQRLKNLERFTQNPAALLIATDVAA 611
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEE 665
RGLDIP ++HVIHY VP+T+E Y+HRSGRTARA+ EG+TV+LI ++E+ K N
Sbjct: 612 RGLDIPNVDHVIHYQVPKTTENYVHRSGRTARASKEGITVLLIGANEVSDYVKLN----- 666
Query: 666 NNEEEERAEADKEKTEDINVTVSSKK--KKLKRKQNPSQ-VEVSEL-SANTNDP---DDQ 718
+TED+ + +S++ K++K + N ++ +E ++L TND +D+
Sbjct: 667 ---------QSLGRTEDLPMYPTSERMMKQIKERVNLARDIEKTDLHQRRTNDSRSWEDK 717
Query: 719 VNKTEEIQSD------EPHSKKLKQKKKKKQ 743
V K E QSD + +KL + ++K+Q
Sbjct: 718 VAK--EFQSDSDLDSEQEEERKLAKSREKRQ 746
Score = 77.4 bits (189), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARA+ EG+T++LI ++E+ Y+K+ SL + DLP +P E ++ IK+R
Sbjct: 632 ENYVHRSGRTARASKEGITVLLIGANEVSDYVKLNQSLGRTEDLPMYPTSERMMKQIKER 691
Query: 1298 IDLAKSIEYLE-SKIKKNRPDNWLEKAAKDM 1327
++LA+ IE + + + N +W +K AK+
Sbjct: 692 VNLARDIEKTDLHQRRTNDSRSWEDKVAKEF 722
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA+Q+ +H+ KYT +K+A V GG++ KQ R+L KCP I++ATPG L
Sbjct: 347 ALILTPTRELAVQINDHLKAITKYTDIKIATVFGGLAAVKQERMLKKCPEIVIATPGRL 405
>gi|348531313|ref|XP_003453154.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Oreochromis niloticus]
Length = 847
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 249/549 (45%), Positives = 344/549 (62%), Gaps = 46/549 (8%)
Query: 731 HSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKT 790
+K K KK + +T+A S +ED V M+ W +P ++RAL GF +
Sbjct: 212 QNKVTKAPHKKAKNWTNAA-------LSGSEDKNVDMSAWKDLFVPPPVLRALSSLGFGS 264
Query: 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV----NKLENPTEED---- 842
PT IQ++ +P A+ R DI+GAAETGSGKTLAFGIPI+ I+ N+ EED
Sbjct: 265 PTPIQALCLPPAIRDRMDILGAAETGSGKTLAFGIPIIHTILEWKHNEYTKSAEEDQEEG 324
Query: 843 -----ENDSGLEEE-----AEEVLEELEEESANTTEFVKKT------------RNKLYAL 880
END E++ E+ ++E+E +K L L
Sbjct: 325 VEASKENDEDAEDQNQGDSDEDEHSDVEDEQLGCVRVIKNADFDFDEKPAGAQSRPLLGL 384
Query: 881 ILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEF 940
+L PTRELA+QV++HI K+T +K A VVGGM+ +KQ R+L + P I++ATPGRLW+
Sbjct: 385 VLTPTRELAVQVKHHIDAVAKFTDIKTALVVGGMAQQKQRRVLKRRPEIIIATPGRLWDL 444
Query: 941 IQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000
I+ H HL L ++ LVIDE DRM+E GHF EL+N+L+ + T + RQTFVFSATLT
Sbjct: 445 IKERHPHLVNLRQLRCLVIDEADRMVERGHFAELENLLEMLNTTHFNPTRQTFVFSATLT 504
Query: 1001 --HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESK 1057
HSL L KK ++ ++ ++ L + + IKS PK+VDLT K +TL E++
Sbjct: 505 MVHSLPTRLLQKKKKNLDQR-----NKLEILMEKVGIKSKPKVVDLTRKEATVETLIETQ 559
Query: 1058 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 1117
I C+ DEKD YLYYF+LQ+PGRT+VF NSI +KRL LL +L C+PLPLHA+M+Q+QRL
Sbjct: 560 IHCQKDEKDFYLYYFLLQYPGRTMVFANSIDCIKRLNSLLVILDCTPLPLHANMHQKQRL 619
Query: 1118 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 1177
KNL+RF ++ N +LL TDVAARGLDIP ++HVIHY VPRTSE Y+HRSGRTARA EGL
Sbjct: 620 KNLERFAERENCVLLTTDVAARGLDIPNVQHVIHYQVPRTSETYVHRSGRTARATKEGLC 679
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
++L+ D++ + K+ +L K +LP FPI+ + I +R++LA+ IE +E K +
Sbjct: 680 MLLVSPDDMMNFKKICKTLGKDEELPTFPIETKCMDAIMERVNLARRIEKVEYYNSKEKH 739
Query: 1238 DN-WLHRSG 1245
N WL ++
Sbjct: 740 HNSWLKQAA 748
Score = 398 bits (1023), Expect = e-107, Method: Compositional matrix adjust.
Identities = 234/581 (40%), Positives = 316/581 (54%), Gaps = 120/581 (20%)
Query: 107 EIQSDEPSSKKLKQKKKKKQTYTSA----NKELLEVDTSNNEDMFVQMAEWVKFNIPETI 162
E Q + SS L+++K + T A K S +ED V M+ W +P +
Sbjct: 194 EEQPNPESSSDLEKEKSGQNKVTKAPHKKAKNWTNAALSGSEDKNVDMSAWKDLFVPPPV 253
Query: 163 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV----NKL 218
+RAL GF +PT IQ++ +P A+ R DI+GAAETGSGKTLAFGIPI+ I+ N+
Sbjct: 254 LRALSSLGFGSPTPIQALCLPPAIRDRMDILGAAETGSGKTLAFGIPIIHTILEWKHNEY 313
Query: 219 ENPTEED---------ENDSGLEEE-----AEEVLEELEEESANTTEFVKKT-------- 256
EED END E++ E+ ++E+E +K
Sbjct: 314 TKSAEEDQEEGVEASKENDEDAEDQNQGDSDEDEHSDVEDEQLGCVRVIKNADFDFDEKP 373
Query: 257 ----RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
L L+L PTRELA+QV++HI K+T +K A VVGGM+ +KQ R+L + P I
Sbjct: 374 AGAQSRPLLGLVLTPTRELAVQVKHHIDAVAKFTDIKTALVVGGMAQQKQRRVLKRRPEI 433
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
++ATPGRLW+ I+ H HL L ++ LVIDE DRM+E G
Sbjct: 434 IIATPGRLWDLIKERHPHLVNLRQLRCLVIDEADRMVERG-------------------- 473
Query: 373 RQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK 432
HF EL+N+L+ + T + RQTFVFSATLT + +SL + Q K K + +
Sbjct: 474 --------HFAELENLLEMLNTTHFNPTRQTFVFSATLT--MVHSLPTRLLQKKKKNLDQ 523
Query: 433 GDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
+ K+ L EK+GI
Sbjct: 524 RN---------------KLEILMEKVGIKS------------------------------ 538
Query: 493 CEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 552
PK+VDLT K +TL E++I C+ DEKD YLYYF+LQ+PGRT+VF N
Sbjct: 539 -----------KPKVVDLTRKEATVETLIETQIHCQKDEKDFYLYYFLLQYPGRTMVFAN 587
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
SI +KRL LL +L C+PLPLHA+M+Q+QRLKNL+RF ++ N +LL TDVAARGLDIP
Sbjct: 588 SIDCIKRLNSLLVILDCTPLPLHANMHQKQRLKNLERFAERENCVLLTTDVAARGLDIPN 647
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
++HVIHY VPRTSE Y+HRSGRTARA EGL ++L+ D++
Sbjct: 648 VQHVIHYQVPRTSETYVHRSGRTARATKEGLCMLLVSPDDM 688
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV++HI K+T +K A VVGGM+ +KQ R+L + P I++ATPG L
Sbjct: 383 GLVLTPTRELAVQVKHHIDAVAKFTDIKTALVVGGMAQQKQRRVLKRRPEIIIATPGRL 441
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
LV+++ +PL+ M K +L F E+ + L I ++ I P
Sbjct: 599 LVILDCTPLPLHANMHQKQRLK-NLERFAERENCVLLTTDVAARGLDIPNVQHVIHYQVP 657
Query: 1238 ---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
+ ++HRSGRTARA EGL ++L+ D++ + K+ +L K +LP FPI+ + I
Sbjct: 658 RTSETYVHRSGRTARATKEGLCMLLVSPDDMMNFKKICKTLGKDEELPTFPIETKCMDAI 717
Query: 1295 KKRIDLAKSIEYLESKIKKNRPDN-WLEKAAKDMDI 1329
+R++LA+ IE +E K + N WL++AA+ +++
Sbjct: 718 MERVNLARRIEKVEYYNSKEKHHNSWLKQAAEALEV 753
>gi|170053020|ref|XP_001862485.1| ATP-dependent RNA helicase DDX24 [Culex quinquefasciatus]
gi|167873707|gb|EDS37090.1| ATP-dependent RNA helicase DDX24 [Culex quinquefasciatus]
Length = 817
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 237/515 (46%), Positives = 339/515 (65%), Gaps = 43/515 (8%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
T ++ D F +W + + E I+RAL KGF+ PT+IQ++ +P+A+L ++D++GAAETG
Sbjct: 214 TYSSADYF----KWTELGVSEPIVRALADKGFRQPTEIQTLSLPAAILGKRDLLGAAETG 269
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE---------------------- 854
SGKTLAFGIP+L GI+ N + S EE E
Sbjct: 270 SGKTLAFGIPLLEGIMKLKANGGLKTVKKSDAEESREGHELTPEPEELEFYPAPDGGDSV 329
Query: 855 -VLEELEEESANTTEFVKKTRNK-LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 912
++LE E KK NK LYALIL PTRELA+Q+ +H+ KYT +++A V G
Sbjct: 330 LAAQDLEREK-------KKDLNKPLYALILTPTRELAVQINDHLKAVTKYTDIQIATVFG 382
Query: 913 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
G++ KQ R+L +CP I++ATPGRLWE +Q G+ HL+++ +I +LVIDETDRM+E GHF
Sbjct: 383 GLAVVKQERMLKRCPEIVIATPGRLWELMQAGNHHLSKMDQIRFLVIDETDRMLEKGHFD 442
Query: 973 ELKNILDRVTMTE-TSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRL 1029
ELK +L+ + E ++ R+ ++FSATLT H L L K ++K ++K + + +RL
Sbjct: 443 ELKQLLEMLNQNEEATKLRRNYIFSATLTLDHDLPEHLKAKSKKNKKLNITK-ETTGQRL 501
Query: 1030 QDL---LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 1086
+L + + PK+VD+T++ G +TLTES+ILCK + KD YLYYF+L+HPGRTLVFCNS
Sbjct: 502 NNLVQTIGMTDPKVVDITQQHGTAQTLTESRILCKAEHKDYYLYYFLLRHPGRTLVFCNS 561
Query: 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 1146
I VKRL L T L C PL L SM QRQRLKNL+RF ++L+ATDVAARGLDIP +
Sbjct: 562 IDCVKRLVSLFTYLNCDPLSLFGSMQQRQRLKNLERFTQNPAALLIATDVAARGLDIPNV 621
Query: 1147 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206
+HVIHY VP+T+E Y+HRSGRTARA EG+ ++L +DE+ Y+K+ +L +K DLP +P
Sbjct: 622 DHVIHYQVPKTTENYVHRSGRTARATREGIAILLTGADEVKDYVKLNQALGRKEDLPMYP 681
Query: 1207 IDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNW 1240
+ ++ +++R++LA+ IE E + ++ N +W
Sbjct: 682 TSDRMMKQVRERVNLAREIEKTELRQRRSNESRSW 716
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 226/548 (41%), Positives = 311/548 (56%), Gaps = 120/548 (21%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
T ++ D F +W + + E I+RAL KGF+ PT+IQ++ +P+A+L ++D++GAAETG
Sbjct: 214 TYSSADYF----KWTELGVSEPIVRALADKGFRQPTEIQTLSLPAAILGKRDLLGAAETG 269
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE---------------------- 237
SGKTLAFGIP+L GI+ N + S EE E
Sbjct: 270 SGKTLAFGIPLLEGIMKLKANGGLKTVKKSDAEESREGHELTPEPEELEFYPAPDGGDSV 329
Query: 238 -VLEELEEESANTTEFVKKTRNK-LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 295
++LE E KK NK LYALIL PTRELA+Q+ +H+ KYT +++A V G
Sbjct: 330 LAAQDLEREK-------KKDLNKPLYALILTPTRELAVQINDHLKAVTKYTDIQIATVFG 382
Query: 296 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 355
G++ KQ R+L +CP I++ATPGRLWE +Q G+ HL+++ +I +LVIDETDRM+E G
Sbjct: 383 GLAVVKQERMLKRCPEIVIATPGRLWELMQAGNHHLSKMDQIRFLVIDETDRMLEKG--- 439
Query: 356 ELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE-TSQPRQTFVFSATLT--H 412
HF ELK +L+ + E ++ R+ ++FSATLT H
Sbjct: 440 -------------------------HFDELKQLLEMLNQNEEATKLRRNYIFSATLTLDH 474
Query: 413 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472
L L K ++K ++K + + +RL +L+ + IG+T
Sbjct: 475 DLPEHLKAKSKKNKKLNITK-ETTGQRLNNLV-----------QTIGMT----------- 511
Query: 473 HDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 532
PK+VD+T++ G +TLTES+ILCK + K
Sbjct: 512 -------------------------------DPKVVDITQQHGTAQTLTESRILCKAEHK 540
Query: 533 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592
D YLYYF+L+HPGRTLVFCNSI VKRL L T L C PL L SM QRQRLKNL+RF
Sbjct: 541 DYYLYYFLLRHPGRTLVFCNSIDCVKRLVSLFTYLNCDPLSLFGSMQQRQRLKNLERFTQ 600
Query: 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
++L+ATDVAARGLDIP ++HVIHY VP+T+E Y+HRSGRTARA EG+ ++L +DE
Sbjct: 601 NPAALLIATDVAARGLDIPNVDHVIHYQVPKTTENYVHRSGRTARATREGIAILLTGADE 660
Query: 653 IPLKTKFN 660
+ K N
Sbjct: 661 VKDYVKLN 668
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARA EG+ ++L +DE+ Y+K+ +L +K DLP +P + ++ +++R
Sbjct: 634 ENYVHRSGRTARATREGIAILLTGADEVKDYVKLNQALGRKEDLPMYPTSDRMMKQVRER 693
Query: 1298 IDLAKSIEYLESKIKK-NRPDNWLEKAAKDMD 1328
++LA+ IE E + ++ N +W +K AK+ +
Sbjct: 694 VNLAREIEKTELRQRRSNESRSWEDKVAKEFE 725
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA+Q+ +H+ KYT +++A V GG++ KQ R+L +CP I++ATPG L
Sbjct: 349 ALILTPTRELAVQINDHLKAVTKYTDIQIATVFGGLAVVKQERMLKRCPEIVIATPGRL 407
>gi|405950996|gb|EKC18946.1| ATP-dependent RNA helicase DDX24 [Crassostrea gigas]
Length = 1159
Score = 448 bits (1153), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/531 (46%), Positives = 347/531 (65%), Gaps = 44/531 (8%)
Query: 733 KKLKQKKKKK--QTYTSANKEL-----LEVDTSNNEDMFV--QMAEWVKFNIPETIIRAL 783
KK +K+K+K +Y+S K + E +T + +D + +MA W +P+ +++AL
Sbjct: 179 KKTARKRKEKFVDSYSSERKRMKVMEESEEETKSPDDGKINEKMAAWKDLFVPKEVLQAL 238
Query: 784 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843
+ F PT IQ+M +PSA+ RKD+VGAAETGSGKTLAFGIP+ G + ++ + D
Sbjct: 239 CKSKFFAPTPIQAMALPSAIRDRKDVVGAAETGSGKTLAFGIPV--GDLGCVKVIDDADF 296
Query: 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT 903
++ GL + +KK+ ALIL PTRELA+QV++H+ A YT
Sbjct: 297 SELGLPDAGP---------------LLKKSNKSPLALILQPTRELAVQVKDHLQVAAAYT 341
Query: 904 PVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETD 963
+ +A ++GGMS EKQ RIL KCP ILVATPGRLWE + + L+ + +++ LVIDE D
Sbjct: 342 DITIAPILGGMSAEKQKRILKKCPDILVATPGRLWELMSQDPY-LSRIDEVDTLVIDEAD 400
Query: 964 RMIESGHFPELKNILDRVTMTETSQ-PRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVS 1020
RMIE GHF EL IL+ + E + RQTFVFSATLT HS G +S +
Sbjct: 401 RMIEKGHFEELTQILNYINRNEKKKNTRQTFVFSATLTLVHS---------GPQRSSRKK 451
Query: 1021 KGDPSIKRLQDLLNI----KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
K+L+ L++ + PK++DLT KIG +TLTE++I C +EKD YLYYF++Q+
Sbjct: 452 MALTEEKKLETLMSRIQMREKPKVIDLTRKIGTVETLTEARINCTLEEKDLYLYYFLIQY 511
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
PGRTLVF NS ++RL + T+LK +PLPLHA M+Q+QRLKNL++F +NS+LLA+DV
Sbjct: 512 PGRTLVFANSKDCIRRLISIFTLLKTNPLPLHADMHQKQRLKNLEKFTANDNSVLLASDV 571
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
AARGLDIP +EHVIHY VP+T E Y+HRSGRTARA EGL+++LI D++ Y K+ ++L
Sbjct: 572 AARGLDIPNVEHVIHYQVPQTVENYVHRSGRTARAMKEGLSVMLISPDDVKNYRKIVHTL 631
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKI-KKNRPDNWLHRSGR 1246
+ DLP FP++ +LS++KKR++LAK I+ E + KK R + W ++ R
Sbjct: 632 NRDEDLPIFPVEHQLLSVLKKRLNLAKRIDTEEHRFNKKKRQNEWFEKAAR 682
Score = 363 bits (933), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 226/550 (41%), Positives = 311/550 (56%), Gaps = 115/550 (20%)
Query: 114 SSKKLKQKKKKK--QTYTSANKEL-----LEVDTSNNEDMFV--QMAEWVKFNIPETIIR 164
S KK +K+K+K +Y+S K + E +T + +D + +MA W +P+ +++
Sbjct: 177 SEKKTARKRKEKFVDSYSSERKRMKVMEESEEETKSPDDGKINEKMAAWKDLFVPKEVLQ 236
Query: 165 ALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 224
AL + F PT IQ+M +PSA+ RKD+VGAAETGSGKTLAFGIP+ G + ++ +
Sbjct: 237 ALCKSKFFAPTPIQAMALPSAIRDRKDVVGAAETGSGKTLAFGIPV--GDLGCVKVIDDA 294
Query: 225 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK 284
D ++ GL + +KK+ ALIL PTRELA+QV++H+ A
Sbjct: 295 DFSELGLPDAGP---------------LLKKSNKSPLALILQPTRELAVQVKDHLQVAAA 339
Query: 285 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
YT + +A ++GGMS EKQ RIL KCP ILVATPGRLWE + + L+ + +++ LVIDE
Sbjct: 340 YTDITIAPILGGMSAEKQKRILKKCPDILVATPGRLWELMSQDPY-LSRIDEVDTLVIDE 398
Query: 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ-PRQT 403
DRMIE GHF EL IL+ + E + RQT
Sbjct: 399 ADRMIEK----------------------------GHFEELTQILNYINRNEKKKNTRQT 430
Query: 404 FVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKT 463
F + T +L +S G +S + K++
Sbjct: 431 --FVFSATLTLVHS-----GPQRSSR--------KKM----------------------A 453
Query: 464 LTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTES 523
LTE K L TL IQ + PK++DLT KIG +TLTE+
Sbjct: 454 LTEEKKL-------------------ETLMSRIQ---MREKPKVIDLTRKIGTVETLTEA 491
Query: 524 KILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+I C +EKD YLYYF++Q+PGRTLVF NS ++RL + T+LK +PLPLHA M+Q+QR
Sbjct: 492 RINCTLEEKDLYLYYFLIQYPGRTLVFANSKDCIRRLISIFTLLKTNPLPLHADMHQKQR 551
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
LKNL++F +NS+LLA+DVAARGLDIP +EHVIHY VP+T E Y+HRSGRTARA EGL
Sbjct: 552 LKNLEKFTANDNSVLLASDVAARGLDIPNVEHVIHYQVPQTVENYVHRSGRTARAMKEGL 611
Query: 644 TVVLIESDEI 653
+V+LI D++
Sbjct: 612 SVMLISPDDV 621
Score = 103 bits (256), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 100/164 (60%), Gaps = 5/164 (3%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
L++++ +PL+ M K +L F +++ + L I +E I P
Sbjct: 532 FTLLKTNPLPLHADMHQKQRLK-NLEKFTANDNSVLLASDVAARGLDIPNVEHVIHYQVP 590
Query: 1238 ---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
+N++HRSGRTARA EGL+++LI D++ Y K+ ++L + DLP FP++ +LS++
Sbjct: 591 QTVENYVHRSGRTARAMKEGLSVMLISPDDVKNYRKIVHTLNRDEDLPIFPVEHQLLSVL 650
Query: 1295 KKRIDLAKSIEYLESKI-KKNRPDNWLEKAAKDMDIIIDDENLI 1337
KKR++LAK I+ E + KK R + W EKAA++MD+++DDE L+
Sbjct: 651 KKRLNLAKRIDTEEHRFNKKKRQNEWFEKAAREMDMLMDDEELL 694
Score = 84.3 bits (207), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 16/128 (12%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
ALIL PTRELA+QV++H+ A YT + +A ++GGMS EKQ RIL KCP ILVATPG L
Sbjct: 317 ALILQPTRELAVQVKDHLQVAAAYTDITIAPILGGMSAEKQKRILKKCPDILVATPGRLW 376
Query: 1415 -------SLKRIDLAKSIEYLESKIKKNRPDNWLEKAA-KDMDIIIDDENLIQPKANSRE 1466
L RID ++ E+ D +EK +++ I++ N + K N+R+
Sbjct: 377 ELMSQDPYLSRIDEVDTLVIDEA-------DRMIEKGHFEELTQILNYINRNEKKKNTRQ 429
Query: 1467 NALMSKAL 1474
+ S L
Sbjct: 430 TFVFSATL 437
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 1417 KRIDLAKSIEYLESKI-KKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKALV 1475
KR++LAK I+ E + KK R + W EKAA++MD+++DDE L+ +S E + + L
Sbjct: 652 KRLNLAKRIDTEEHRFNKKKRQNEWFEKAAREMDMLMDDEELLSDLGDSFERSGRKQELR 711
Query: 1476 SKRKELQSLL 1485
R EL +L
Sbjct: 712 QLRTELDQML 721
>gi|327259240|ref|XP_003214446.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Anolis
carolinensis]
Length = 799
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/531 (44%), Positives = 340/531 (64%), Gaps = 51/531 (9%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
S + D ++ W +P+ +++AL + GF PT IQ++ +PSA+ D++GAAETGS
Sbjct: 180 SASSDQKANISAWKGLFVPKPVLQALSELGFSAPTPIQALALPSAIRDSMDVLGAAETGS 239
Query: 818 GKTLAFGIPILTGIVN-------------KLENPTEEDENDSGLEEEAEEVLEELEEESA 864
GKTLAF IP++ I+ +LE+ + +E S +EEA E + L A
Sbjct: 240 GKTLAFAIPMIHSILQWYKSRGLPKGSKIQLEDGGDSEEELS--KEEASEDIGGLSSAEA 297
Query: 865 NTTEF------------------------VKKTRNKLYALILAPTRELAIQVQNHILDAG 900
N V + N L L+L PTRELA+QV++HI
Sbjct: 298 NCAAISSVESLVTLCEKASEDGDHPKHDTVGERSNPLLGLVLTPTRELAVQVKHHIDAVT 357
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
+YT +K A +VGGM+ +KQ RIL + P I++ATPGRLWE IQ HL+ L ++ LVID
Sbjct: 358 RYTGIKTANLVGGMAPQKQQRILKRKPEIVIATPGRLWELIQEKQPHLSSLKQLRCLVID 417
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQTFVFSATLT H + KK + K
Sbjct: 418 EADRMVEKGHFLELSQLLEMLNSSQYNPKRQTFVFSATLTLIHQAPARVFQKKNAIRIDK 477
Query: 1019 VSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 1077
+K ++ L + +KS PK++DLT K +TLTE++I C +EKD +LYYF+LQ+P
Sbjct: 478 KTK----LELLMQKVGMKSKPKVIDLTRKEATVETLTETRIHCDTEEKDYFLYYFLLQYP 533
Query: 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
GRT+VF NSI +KRLT LLT+L C+PLPLHA+M+Q+QRLK+L+RF ++N++ LL TDVA
Sbjct: 534 GRTMVFANSIDCIKRLTALLTILDCNPLPLHANMHQKQRLKSLERFAERNSATLLTTDVA 593
Query: 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197
ARGLDIP ++HVIHY VPRTSE+Y+HRSGRTARA NEGL+L+LI ++ + +++ +LE
Sbjct: 594 ARGLDIPHVQHVIHYQVPRTSELYVHRSGRTARAANEGLSLLLIGPSDMMNFKRIYKTLE 653
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLHRSG 1245
K +LP FP++ ++ IK+R++LA+ I EY S+ K++ ++WL ++
Sbjct: 654 KSEELPFFPVETKCMTAIKERVNLARQIEKVEYFNSRAKQH--NSWLQQAA 702
Score = 343 bits (879), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 211/548 (38%), Positives = 293/548 (53%), Gaps = 130/548 (23%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
S + D ++ W +P+ +++AL + GF PT IQ++ +PSA+ D++GAAETGS
Sbjct: 180 SASSDQKANISAWKGLFVPKPVLQALSELGFSAPTPIQALALPSAIRDSMDVLGAAETGS 239
Query: 201 GKTLAFGIPILTGIVN-------------KLENPTEEDENDSGLEEEAEEVLEELEEESA 247
GKTLAF IP++ I+ +LE+ + +E S +EEA E + L A
Sbjct: 240 GKTLAFAIPMIHSILQWYKSRGLPKGSKIQLEDGGDSEEELS--KEEASEDIGGLSSAEA 297
Query: 248 NTTEF------------------------VKKTRNKLYALILAPTRELAIQVQNHILDAG 283
N V + N L L+L PTRELA+QV++HI
Sbjct: 298 NCAAISSVESLVTLCEKASEDGDHPKHDTVGERSNPLLGLVLTPTRELAVQVKHHIDAVT 357
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
+YT +K A +VGGM+ +KQ RIL + P I++ATPGRLWE IQ HL+ L ++ LVID
Sbjct: 358 RYTGIKTANLVGGMAPQKQQRILKRKPEIVIATPGRLWELIQEKQPHLSSLKQLRCLVID 417
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E GHF EL +L+ M+ S + + RQT
Sbjct: 418 EADRMVEKGHFLELSQLLE-------------MLNSSQY---------------NPKRQT 449
Query: 404 FVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGI 460
FVFSATLT H + KK + K +K ++ L + +KS PK++DLT K
Sbjct: 450 FVFSATLTLIHQAPARVFQKKNAIRIDKKTK----LELLMQKVGMKSKPKVIDLTRKEAT 505
Query: 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTL 520
+TLTE++I C +EKD +LYYF+LQ+PGRT+ I K L
Sbjct: 506 VETLTETRIHCDTEEKDYFLYYFLLQYPGRTMV----------------FANSIDCIKRL 549
Query: 521 TESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 580
T +L T++ CN PLPLHA+M+Q
Sbjct: 550 T--ALL--------------------TILDCN------------------PLPLHANMHQ 569
Query: 581 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 640
+QRLK+L+RF ++N++ LL TDVAARGLDIP ++HVIHY VPRTSE+Y+HRSGRTARA N
Sbjct: 570 KQRLKSLERFAERNSATLLTTDVAARGLDIPHVQHVIHYQVPRTSELYVHRSGRTARAAN 629
Query: 641 EGLTVVLI 648
EGL+++LI
Sbjct: 630 EGLSLLLI 637
Score = 86.7 bits (213), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 73/101 (72%), Gaps = 5/101 (4%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI ++ + +++ +LEK +LP FP++ ++ IK+R++
Sbjct: 617 YVHRSGRTARAANEGLSLLLIGPSDMMNFKRIYKTLEKSEELPFFPVETKCMTAIKERVN 676
Query: 1300 LAKSI---EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLI 1337
LA+ I EY S+ K++ ++WL++AA+ ++ +DD+ LI
Sbjct: 677 LARQIEKVEYFNSRAKQH--NSWLQQAAEALERDLDDDELI 715
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV++HI +YT +K A +VGGM+ +KQ RIL + P I++ATPG L
Sbjct: 336 GLVLTPTRELAVQVKHHIDAVTRYTGIKTANLVGGMAPQKQQRILKRKPEIVIATPGRL 394
Score = 41.2 bits (95), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 1404 PHILVATPGALSLK-RIDLAKSIE---YLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1459
P V T ++K R++LA+ IE Y S+ K++ ++WL++AA+ ++ +DD+ LI
Sbjct: 659 PFFPVETKCMTAIKERVNLARQIEKVEYFNSRAKQH--NSWLQQAAEALERDLDDDELIG 716
Query: 1460 PKANSRENALMSKALVSKRKELQSLLGKSV 1489
K + +E + K L +K L+ LL + V
Sbjct: 717 GKPSEQEESEKQKMLKGMKKHLKHLLSQPV 746
>gi|242022824|ref|XP_002431838.1| ATP-dependent RNA helicase MAK5, putative [Pediculus humanus
corporis]
gi|212517170|gb|EEB19100.1| ATP-dependent RNA helicase MAK5, putative [Pediculus humanus
corporis]
Length = 543
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/507 (46%), Positives = 336/507 (66%), Gaps = 45/507 (8%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M W F I E I+ ALY K + PTKIQS + A+ + DI+GAAETGSGKTLAFGIP
Sbjct: 1 MRSWNSFGIHEKILYALYDKKYFEPTKIQSRCLGPAICGQMDILGAAETGSGKTLAFGIP 60
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
I+ GI+ S +E+E + +E L+ +K +N LYALIL PTR
Sbjct: 61 IVNGIL-------------SIMEKELNQSIESLK---------MKNEKNNLYALILTPTR 98
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA+QV+NH+ D KYT + +A +VGG++ EKQ RILNK P I+VATPGRLWE + +
Sbjct: 99 ELAVQVRNHLNDICKYTKINIALIVGGLAHEKQERILNKRPEIIVATPGRLWELVNDNNI 158
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP-RQTFVFSATLT--HSL 1003
HL+ + + YL IDETDRM+E GHF EL ++L+R+ + E + RQ F+FSATLT H
Sbjct: 159 HLSNIKNLRYLAIDETDRMLEKGHFTELNDLLERINLNENKKKKRQNFLFSATLTVVHDP 218
Query: 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN---IKSPKIVDLTEKIGITKTLTESKILC 1060
+ L KG+ K+K+++ G ++LQDL++ I +PKIVD+T + L+E KILC
Sbjct: 219 PSYL---KGK-KNKRITPG----QKLQDLISKIGITNPKIVDITNTHVTAENLSEFKILC 270
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
+ +EKD YL+ + GR ++FCNSI VKRL LL ++ PLPLHA+M Q+QRL+NL
Sbjct: 271 QFEEKDYYLFQCLRSQKGRFMIFCNSIGCVKRLANLLNIVNFKPLPLHANMEQKQRLRNL 330
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
++FRD +S+LLATDVAARGLDIP +++VIHY VP+T+EIY+HRSGRTARAN G L+L
Sbjct: 331 EKFRDNPDSLLLATDVAARGLDIPNVDYVIHYQVPKTAEIYVHRSGRTARANTVGNALLL 390
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDN 1239
IE E+ LY K+ ++L K+ D+ DF +D + + ++KK I++A+ I+ L +K+ N +
Sbjct: 391 IEPKELGLYRKLLHTLGKEKDIEDFNVDVNSIKIVKKIINVARDIDQLSLALKRENSKTS 450
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIP 1266
W ++ + ++++ DE+P
Sbjct: 451 WYDKAIKELD--------IIVDEDELP 469
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 230/547 (42%), Positives = 309/547 (56%), Gaps = 129/547 (23%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M W F I E I+ ALY K + PTKIQS + A+ + DI+GAAETGSGKTLAFGIP
Sbjct: 1 MRSWNSFGIHEKILYALYDKKYFEPTKIQSRCLGPAICGQMDILGAAETGSGKTLAFGIP 60
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
I+ GI+ S +E+E + +E L+ +K +N LYALIL PTR
Sbjct: 61 IVNGIL-------------SIMEKELNQSIESLK---------MKNEKNNLYALILTPTR 98
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA+QV+NH+ D KYT + +A +VGG++ EKQ RILNK P I+VATPGRLWE + +
Sbjct: 99 ELAVQVRNHLNDICKYTKINIALIVGGLAHEKQERILNKRPEIIVATPGRLWELVNDNNI 158
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
HL+ + + YL IDETDRM+E G HF EL ++L
Sbjct: 159 HLSNIKNLRYLAIDETDRMLEKG----------------------------HFTELNDLL 190
Query: 390 DRVTMTETSQP-RQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 446
+R+ + E + RQ F+FSATLT H + L KG+ K+K+++ G ++LQDL++
Sbjct: 191 ERINLNENKKKKRQNFLFSATLTVVHDPPSYL---KGK-KNKRITPG----QKLQDLIS- 241
Query: 447 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPK 506
KIGIT +PK
Sbjct: 242 ----------KIGIT------------------------------------------NPK 249
Query: 507 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 566
IVD+T + L+E KILC+ +EKD YL+ + GR ++FCNSI VKRL LL +
Sbjct: 250 IVDITNTHVTAENLSEFKILCQFEEKDYYLFQCLRSQKGRFMIFCNSIGCVKRLANLLNI 309
Query: 567 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626
+ PLPLHA+M Q+QRL+NL++FRD +S+LLATDVAARGLDIP +++VIHY VP+T+E
Sbjct: 310 VNFKPLPLHANMEQKQRLRNLEKFRDNPDSLLLATDVAARGLDIPNVDYVIHYQVPKTAE 369
Query: 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTKF--NLQEEENNEEEERAEADKEKTEDIN 684
IY+HRSGRTARAN G ++LIE E+ L K L +E++ ED N
Sbjct: 370 IYVHRSGRTARANTVGNALLLIEPKELGLYRKLLHTLGKEKD-------------IEDFN 416
Query: 685 VTVSSKK 691
V V+S K
Sbjct: 417 VDVNSIK 423
Score = 84.7 bits (208), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 77/126 (61%), Gaps = 11/126 (8%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
ALIL PTRELA+QV+NH+ D KYT + +A +VGG++ EKQ RILNK P I+VATPG L
Sbjct: 91 ALILTPTRELAVQVRNHLNDICKYTKINIALIVGGLAHEKQERILNKRPEIIVATPGRLW 150
Query: 1415 ---SLKRIDLA--KSIEYLESKIKKNRPDNWLEKA-AKDMDIIIDDENLIQPKANSRENA 1468
+ I L+ K++ YL + D LEK +++ +++ NL + K R+N
Sbjct: 151 ELVNDNNIHLSNIKNLRYLAI----DETDRMLEKGHFTELNDLLERINLNENKKKKRQNF 206
Query: 1469 LMSKAL 1474
L S L
Sbjct: 207 LFSATL 212
Score = 83.6 bits (205), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARAN G L+LIE E+ LY K+ ++L K+ D+ DF +D + + ++KK I+
Sbjct: 371 YVHRSGRTARANTVGNALLLIEPKELGLYRKLLHTLGKEKDIEDFNVDVNSIKIVKKIIN 430
Query: 1300 LAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDENL 1336
+A+ I+ L +K+ N +W +KA K++DII+D++ L
Sbjct: 431 VARDIDQLSLALKRENSKTSWYDKAIKELDIIVDEDEL 468
Score = 42.7 bits (99), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 1417 KRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDENLIQPKANSRE-NALMSKAL 1474
K I++A+ I+ L +K+ N +W +KA K++DII+D++ L PK S E + + + L
Sbjct: 427 KIINVARDIDQLSLALKRENSKTSWYDKAIKELDIIVDEDEL--PKKRSSEADVRIKRDL 484
Query: 1475 VSKRKELQSLLGK 1487
SK+KEL LL K
Sbjct: 485 NSKKKELNQLLSK 497
>gi|301607357|ref|XP_002933278.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Xenopus (Silurana)
tropicalis]
Length = 817
Score = 441 bits (1135), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/530 (43%), Positives = 340/530 (64%), Gaps = 47/530 (8%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
+N V ++ W +P+ +++AL GF PT IQ++ +PSA+ + DI+GAAETGS
Sbjct: 202 ANTSSKNVDVSAWKNLYVPQVVLKALSYLGFACPTPIQALALPSAIRDKMDILGAAETGS 261
Query: 818 GKTLAFGIPILTGIV-------------------------NKLENPTEEDENDSGLEEEA 852
GKTLAF IP++ I+ N+++ +E+++ S EE+
Sbjct: 262 GKTLAFAIPMIHSILEWQKRQEYGAAEGETEEKPTTSDGKNEMDVAEKEEQDMSENEEDV 321
Query: 853 EEVLEELEEESA-----------------NTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E+V + +E SA + T K R L L++ PTRELA+QV++H
Sbjct: 322 EQVDDNVEPLSAACINVENIDINVNAVPSSKTGTWDKER-PLLGLVVTPTRELAVQVKHH 380
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
I K+T ++ A VVGGM+ +KQ R+L++ P I++ATPGRLWE I+ H HL L ++
Sbjct: 381 IDAVAKFTGIRTAIVVGGMAPQKQQRLLDRRPEIVIATPGRLWELIRERHPHLRNLRQLR 440
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LVIDE DRM+E GH+ EL + + ++ + RQTFVFSATLT L + + Q K
Sbjct: 441 CLVIDEADRMVEKGHYAELSQLFELLSEVHYNSKRQTFVFSATLT--LIHQAPTRLLQKK 498
Query: 1016 SKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K D + L + + +K PK++DLT K +TLTE++I C +EKD YLYYF+L
Sbjct: 499 KYKKIDKDSKLVSLMEKIGMKDKPKVIDLTRKQATVETLTETRIHCATEEKDFYLYYFLL 558
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q+PGRT+VF NSI +KRL+ LLT+L C+PLP+HA+M+Q+QRLKNL+RF ++ + +LL T
Sbjct: 559 QYPGRTMVFANSIDCIKRLSSLLTILDCNPLPMHANMHQKQRLKNLERFAERESCVLLTT 618
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDIP ++HVIHY VPRTSE Y+HRSGRTARA+++GLTL+LI +++ + K+F
Sbjct: 619 DVAARGLDIPNVQHVIHYQVPRTSETYVHRSGRTARASSDGLTLLLIGPNDMINFKKIFR 678
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLES-KIKKNRPDNWLHR 1243
+LEK +LPDFP++ +S IK+R++LA+ IE +E K + ++WL +
Sbjct: 679 TLEKNEELPDFPVESKCMSGIKERVNLARMIEKMEYFNCKAKQQNSWLQQ 728
Score = 370 bits (950), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 227/607 (37%), Positives = 324/607 (53%), Gaps = 146/607 (24%)
Query: 108 IQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALY 167
+Q D P+ +K+ +K E +N V ++ W +P+ +++AL
Sbjct: 180 VQKDAPAPHSVKK-----------SKNWSENALANTSSKNVDVSAWKNLYVPQVVLKALS 228
Query: 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV------------ 215
GF PT IQ++ +PSA+ + DI+GAAETGSGKTLAF IP++ I+
Sbjct: 229 YLGFACPTPIQALALPSAIRDKMDILGAAETGSGKTLAFAIPMIHSILEWQKRQEYGAAE 288
Query: 216 -------------NKLENPTEEDENDSGLEEEAEEVLEELEEESA--------------- 247
N+++ +E+++ S EE+ E+V + +E SA
Sbjct: 289 GETEEKPTTSDGKNEMDVAEKEEQDMSENEEDVEQVDDNVEPLSAACINVENIDINVNAV 348
Query: 248 --NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 305
+ T K R L L++ PTRELA+QV++HI K+T ++ A VVGGM+ +KQ R+
Sbjct: 349 PSSKTGTWDKER-PLLGLVVTPTRELAVQVKHHIDAVAKFTGIRTAIVVGGMAPQKQQRL 407
Query: 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 365
L++ P I++ATPGRLWE I+ H HL L ++ LVIDE DRM+E G
Sbjct: 408 LDRRPEIVIATPGRLWELIRERHPHLRNLRQLRCLVIDEADRMVEKG------------- 454
Query: 366 MTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT--LTHSLKNSLNLKKG 423
H+ EL + + ++ + RQTFVFSAT L H L
Sbjct: 455 ---------------HYAELSQLFELLSEVHYNSKRQTFVFSATLTLIHQAPTRL----- 494
Query: 424 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 483
+++ + K K+V L EKIG+ KD
Sbjct: 495 -------------LQKKKYKKIDKDSKLVSLMEKIGM---------------KDK----- 521
Query: 484 ILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 543
PK++DLT K +TLTE++I C +EKD YLYYF+LQ+
Sbjct: 522 ---------------------PKVIDLTRKQATVETLTETRIHCATEEKDFYLYYFLLQY 560
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
PGRT+VF NSI +KRL+ LLT+L C+PLP+HA+M+Q+QRLKNL+RF ++ + +LL TDV
Sbjct: 561 PGRTMVFANSIDCIKRLSSLLTILDCNPLPMHANMHQKQRLKNLERFAERESCVLLTTDV 620
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI-ESDEIPLKTKFNLQ 662
AARGLDIP ++HVIHY VPRTSE Y+HRSGRTARA+++GLT++LI +D I K F
Sbjct: 621 AARGLDIPNVQHVIHYQVPRTSETYVHRSGRTARASSDGLTLLLIGPNDMINFKKIFRTL 680
Query: 663 EEENNEE 669
E+ NEE
Sbjct: 681 EK--NEE 685
Score = 81.3 bits (199), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 87/149 (58%), Gaps = 5/149 (3%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
L +++ + +P++ M K +L F ES + L I ++ I P
Sbjct: 581 LTILDCNPLPMHANMHQKQRLK-NLERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVP 639
Query: 1238 ---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
+ ++HRSGRTARA+++GLTL+LI +++ + K+F +LEK +LPDFP++ +S I
Sbjct: 640 RTSETYVHRSGRTARASSDGLTLLLIGPNDMINFKKIFRTLEKNEELPDFPVESKCMSGI 699
Query: 1295 KKRIDLAKSIEYLES-KIKKNRPDNWLEK 1322
K+R++LA+ IE +E K + ++WL++
Sbjct: 700 KERVNLARMIEKMEYFNCKAKQQNSWLQQ 728
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 6/68 (8%)
Query: 1353 SWD------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 1406
+WD L++ PTRELA+QV++HI K+T ++ A VVGGM+ +KQ R+L++ P I
Sbjct: 355 TWDKERPLLGLVVTPTRELAVQVKHHIDAVAKFTGIRTAIVVGGMAPQKQQRLLDRRPEI 414
Query: 1407 LVATPGAL 1414
++ATPG L
Sbjct: 415 VIATPGRL 422
>gi|410898437|ref|XP_003962704.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Takifugu rubripes]
Length = 739
Score = 441 bits (1134), Expect = e-120, Method: Compositional matrix adjust.
Identities = 238/521 (45%), Positives = 333/521 (63%), Gaps = 32/521 (6%)
Query: 750 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
K EV D ++ W +P +++AL GF +PT IQ++ +PSA+ KDI
Sbjct: 139 KNWTEVVLDGCNDRKTDVSAWKDLFVPAPVLKALSSLGFGSPTPIQALTLPSAIRDHKDI 198
Query: 810 VGAAETGSGKTLAFGIPILTGIVNKLENPTE--EDENDSGLEEEA--------------- 852
+GAAETGSGKTLAFGIP++ I+ +N E ED ++ + ++
Sbjct: 199 LGAAETGSGKTLAFGIPMIHTILEWKKNSAELVEDNIEATIPMKSLYLPEPTASENYSVE 258
Query: 853 EEVLEELEEESANTTE----FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA 908
EEV+++ E ES + T+ L L+L PTRELA+QV++HI K+T +K A
Sbjct: 259 EEVIKDAETESEDMTKEEENAAGSFSQPLLGLVLTPTRELAVQVKHHIDAVSKFTDIKTA 318
Query: 909 CVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES 968
VVGG+S EKQ R+L P I++ATPGRLW+ I+ H HL L ++ LVIDE DRM+E
Sbjct: 319 IVVGGLSQEKQRRMLKLRPEIIIATPGRLWDLIKEKHPHLQNLRQVRCLVIDEADRMVER 378
Query: 969 GHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSI 1026
GHF EL+N+L+ + + RQ FVFSATLT HSL L K+ + + +
Sbjct: 379 GHFAELENLLEMLKTAHFNPLRQMFVFSATLTTKHSLPTRLLQKRSLDQRSR-------L 431
Query: 1027 KRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 1085
+ L D + IK+ PKIVDLT K +TLTE+ I C+ +EKD YLYYF+L++PGRT+VF N
Sbjct: 432 EILIDKVGIKAKPKIVDLTRKEATVETLTETCIQCQKEEKDFYLYYFLLRYPGRTMVFAN 491
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
SI +KRL LL +L C LPLHA+M+Q+QRLKNL+RF +++ +LL TDVAARGLDIP
Sbjct: 492 SIDCIKRLNSLLVILDCDTLPLHANMHQKQRLKNLERFAERDRCVLLTTDVAARGLDIPN 551
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
++HVIHY VPRTSE Y+HRSGRTARA EGL+L+LI D++ + K++ +L K +LP F
Sbjct: 552 VQHVIHYQVPRTSETYVHRSGRTARATKEGLSLLLIGPDDMMNFKKIYRTLGKDEELPMF 611
Query: 1206 PIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHRSG 1245
PI+ + IK+R++LA+ IE +E +K ++WL ++
Sbjct: 612 PIETKCMEAIKERVNLARQIEKVEFHNSRKKHHNSWLKQAA 652
Score = 319 bits (818), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 207/545 (37%), Positives = 284/545 (52%), Gaps = 115/545 (21%)
Query: 133 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
K EV D ++ W +P +++AL GF +PT IQ++ +PSA+ KDI
Sbjct: 139 KNWTEVVLDGCNDRKTDVSAWKDLFVPAPVLKALSSLGFGSPTPIQALTLPSAIRDHKDI 198
Query: 193 VGAAETGSGKTLAFGIPILTGIVNKLENPTE--EDENDSGLEEEA--------------- 235
+GAAETGSGKTLAFGIP++ I+ +N E ED ++ + ++
Sbjct: 199 LGAAETGSGKTLAFGIPMIHTILEWKKNSAELVEDNIEATIPMKSLYLPEPTASENYSVE 258
Query: 236 EEVLEELEEESANTTE----FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA 291
EEV+++ E ES + T+ L L+L PTRELA+QV++HI K+T +K A
Sbjct: 259 EEVIKDAETESEDMTKEEENAAGSFSQPLLGLVLTPTRELAVQVKHHIDAVSKFTDIKTA 318
Query: 292 CVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES 351
VVGG+S EKQ R+L P I++ATPGRLW+ I+ H HL L ++ LVIDE DRM+E
Sbjct: 319 IVVGGLSQEKQRRMLKLRPEIIIATPGRLWDLIKEKHPHLQNLRQVRCLVIDEADRMVER 378
Query: 352 GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
GHF EL+N+L+ M+++ HF L RQ FVFSATLT
Sbjct: 379 GHFAELENLLE-------------MLKTAHFNPL---------------RQMFVFSATLT 410
Query: 412 --HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESK 468
HSL L K+ + + ++ L D + IK+ PKIVDLT K +TLTE+
Sbjct: 411 TKHSLPTRLLQKRSLDQRSR-------LEILIDKVGIKAKPKIVDLTRKEATVETLTETC 463
Query: 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 528
I C+ +EKD YLYYF+L++PGRT+ I K L ++
Sbjct: 464 IQCQKEEKDFYLYYFLLRYPGRTMV----------------FANSIDCIKRLNSLLVILD 507
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
D TL ++ +RL L +R D
Sbjct: 508 CD----------------TLPLHANMHQKQRLKNL------------------ERFAERD 533
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
R +LL TDVAARGLDIP ++HVIHY VPRTSE Y+HRSGRTARA EGL+++LI
Sbjct: 534 R------CVLLTTDVAARGLDIPNVQHVIHYQVPRTSETYVHRSGRTARATKEGLSLLLI 587
Query: 649 ESDEI 653
D++
Sbjct: 588 GPDDM 592
Score = 91.3 bits (225), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 99/165 (60%), Gaps = 7/165 (4%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESVL---SLIKKRIDLAKSIEYLESKIK 1233
LV+++ D +PL+ M K +L F D VL + + +D+ + ++
Sbjct: 503 LVILDCDTLPLHANMHQKQRLK-NLERFAERDRCVLLTTDVAARGLDIPNVQHVIHYQVP 561
Query: 1234 KNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSL 1293
+ + ++HRSGRTARA EGL+L+LI D++ + K++ +L K +LP FPI+ +
Sbjct: 562 RT-SETYVHRSGRTARATKEGLSLLLIGPDDMMNFKKIYRTLGKDEELPMFPIETKCMEA 620
Query: 1294 IKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDENLI 1337
IK+R++LA+ IE +E +K ++WL++AA+DM+I +DD+ LI
Sbjct: 621 IKERVNLARQIEKVEFHNSRKKHHNSWLKQAAEDMEIDLDDDLLI 665
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV++HI K+T +K A VVGG+S EKQ R+L P I++ATPG L
Sbjct: 289 GLVLTPTRELAVQVKHHIDAVSKFTDIKTAIVVGGLSQEKQRRMLKLRPEIIIATPGRL 347
Score = 40.4 bits (93), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 9/77 (11%)
Query: 1418 RIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKAN----SRENALMSK 1472
R++LA+ IE +E +K ++WL++AA+DM+I +DD+ LI K N RE +M K
Sbjct: 624 RVNLARQIEKVEFHNSRKKHHNSWLKQAAEDMEIDLDDDLLIG-KGNDEEQDREQKMMVK 682
Query: 1473 ALVSKRKELQSLLGKSV 1489
+ +K L+ L+ + V
Sbjct: 683 GM---KKHLKHLISQPV 696
>gi|395503712|ref|XP_003756207.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Sarcophilus harrisii]
Length = 800
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/519 (45%), Positives = 333/519 (64%), Gaps = 36/519 (6%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
T+ +D ++ W +PE ++RAL GF PT IQ++ + A+ DI+GAAETG
Sbjct: 194 TAKLDDQKADVSAWKDLFVPEPVLRALSSLGFSAPTPIQALALAPAIRDNLDILGAAETG 253
Query: 817 SGKTLAFGIPILTGIVNKLE------NPTEEDEN--------DSGLEE-----------E 851
SGKTLAF IP++ ++ E +E+ E+ D G EE E
Sbjct: 254 SGKTLAFAIPMIHSVLRWQEEQEQAGGHSEDGESLGDANGSSDDGNEEKDGDPSHSPSDE 313
Query: 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 911
E ELE E T ++ + L L+L PTRELA+QV++HI K+T +K A +V
Sbjct: 314 KESADIELELEEEKPTGHSNRS-SPLLGLVLTPTRELAVQVKHHIDAVAKFTGIKTALLV 372
Query: 912 GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 971
GGM+ +KQ R+L + P I++ATPGRLWE I+ H HL+ L ++ LVIDE DRM+E GHF
Sbjct: 373 GGMAPQKQQRMLTRRPEIVIATPGRLWELIKEQHQHLSNLRQLRCLVIDEADRMVERGHF 432
Query: 972 PELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRL 1029
EL +L+ + ++ + RQTFVFSATLT H + KK K K+ K D +
Sbjct: 433 TELTQLLEMLNDSQYNPQRQTFVFSATLTLVHQAPARVFQKKNAKKIDKLGKLD---MLM 489
Query: 1030 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 1089
Q + PK++DLT K +TLTE+KI C +EKD YLYYF+LQ+PGRT+VF NSI
Sbjct: 490 QKIGMRGKPKVIDLTRKEATVETLTETKIHCDKEEKDFYLYYFLLQYPGRTMVFANSIDC 549
Query: 1090 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 1149
+KRLT LL++L+ PLPLHA+M+Q+QRLKNL+RF +++N +LL+TDVAARGLDIP ++HV
Sbjct: 550 IKRLTALLSILEQEPLPLHANMHQKQRLKNLERFAERDNGVLLSTDVAARGLDIPDVQHV 609
Query: 1150 IHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE 1209
IHY VPRTSEIY+HRSGRTARA EGL+L+LI D++ + K++ +LEK ++P FPI+
Sbjct: 610 IHYQVPRTSEIYVHRSGRTARAAKEGLSLLLIGPDDMINFKKIYKTLEKNEEIPLFPIEI 669
Query: 1210 SVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLHRSG 1245
+ IK+R++LA+ I EY S+ K++ + W ++
Sbjct: 670 KCMKAIKERVNLARQIEKEEYYNSRAKQH--NAWFQQAA 706
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 218/541 (40%), Positives = 298/541 (55%), Gaps = 115/541 (21%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
T+ +D ++ W +PE ++RAL GF PT IQ++ + A+ DI+GAAETG
Sbjct: 194 TAKLDDQKADVSAWKDLFVPEPVLRALSSLGFSAPTPIQALALAPAIRDNLDILGAAETG 253
Query: 200 SGKTLAFGIPILTGIVNKLE------NPTEEDEN--------DSGLEE-----------E 234
SGKTLAF IP++ ++ E +E+ E+ D G EE E
Sbjct: 254 SGKTLAFAIPMIHSVLRWQEEQEQAGGHSEDGESLGDANGSSDDGNEEKDGDPSHSPSDE 313
Query: 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 294
E ELE E T ++ + L L+L PTRELA+QV++HI K+T +K A +V
Sbjct: 314 KESADIELELEEEKPTGHSNRS-SPLLGLVLTPTRELAVQVKHHIDAVAKFTGIKTALLV 372
Query: 295 GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 354
GGM+ +KQ R+L + P I++ATPGRLWE I+ H HL+ L ++ LVIDE DRM+E G
Sbjct: 373 GGMAPQKQQRMLTRRPEIVIATPGRLWELIKEQHQHLSNLRQLRCLVIDEADRMVERG-- 430
Query: 355 PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT--LTH 412
HF EL +L+ + ++ + RQTFVFSAT L H
Sbjct: 431 --------------------------HFTELTQLLEMLNDSQYNPQRQTFVFSATLTLVH 464
Query: 413 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472
+ KK K K+ K+ L +KIG+
Sbjct: 465 QAPARVFQKKNAKKIDKLG------------------KLDMLMQKIGMRG---------- 496
Query: 473 HDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 532
PK++DLT K +TLTE+KI C +EK
Sbjct: 497 -------------------------------KPKVIDLTRKEATVETLTETKIHCDKEEK 525
Query: 533 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592
D YLYYF+LQ+PGRT+VF NSI +KRLT LL++L+ PLPLHA+M+Q+QRLKNL+RF +
Sbjct: 526 DFYLYYFLLQYPGRTMVFANSIDCIKRLTALLSILEQEPLPLHANMHQKQRLKNLERFAE 585
Query: 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
++N +LL+TDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA EGL+++LI D+
Sbjct: 586 RDNGVLLSTDVAARGLDIPDVQHVIHYQVPRTSEIYVHRSGRTARAAKEGLSLLLIGPDD 645
Query: 653 I 653
+
Sbjct: 646 M 646
Score = 81.3 bits (199), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 69/101 (68%), Gaps = 5/101 (4%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA EGL+L+LI D++ + K++ +LEK ++P FPI+ + IK+R++
Sbjct: 621 YVHRSGRTARAAKEGLSLLLIGPDDMINFKKIYKTLEKNEEIPLFPIEIKCMKAIKERVN 680
Query: 1300 LAKSI---EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLI 1337
LA+ I EY S+ K++ + W ++AA ++I +DD+ I
Sbjct: 681 LARQIEKEEYYNSRAKQH--NAWFQQAADALEIDLDDDVFI 719
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+L + P I++ATPG L
Sbjct: 340 GLVLTPTRELAVQVKHHIDAVAKFTGIKTALLVGGMAPQKQQRMLTRRPEIVIATPGRL 398
>gi|432850192|ref|XP_004066748.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX24-like
[Oryzias latipes]
Length = 820
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/542 (43%), Positives = 335/542 (61%), Gaps = 60/542 (11%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
+++D ++ W +P ++++AL GF++PT IQ++ +P A+ D++GAAETGS
Sbjct: 182 GSDDDKQSDVSAWKDLFVPSSVLKALSSLGFESPTPIQALALPPAIRDHMDVLGAAETGS 241
Query: 818 GKTLAFGIPIL-------------------------------------------TGIVNK 834
GKTLAFGIP++ T + N+
Sbjct: 242 GKTLAFGIPMIHAILEWKRGTEQSLHDNIDKTPPKVVSLYLPSVEESAKSEDESTAVGNQ 301
Query: 835 LENPTEEDENDSGLEEEAEEVLEEL-------EEESANTTEFVKKTRNKLYALILAPTRE 887
+ DE DS E+ +E+ E+ E + L ++L PTRE
Sbjct: 302 EGSVEASDEEDSSAEDGSEDQDEKTGSVCTVKNAERCVEEQLAGGRSRPLLGMVLTPTRE 361
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+QV++HI K+T +K A +VGGM+ +KQ R+L +CP I++ATPGRLW+ I+ H H
Sbjct: 362 LAVQVKHHIDAVTKFTDIKTAILVGGMAQQKQKRMLKRCPEIIIATPGRLWDLIKEKHPH 421
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKN 1005
L L + LVIDE DRM+E GHF EL+++L+ + T + RQTFVFSATLT HSL +
Sbjct: 422 LLNLRHLRCLVIDEADRMVERGHFAELESLLEMLNTTHFNPKRQTFVFSATLTLTHSLPS 481
Query: 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDE 1064
L KK +K SK D I+++ IKS PK++DLT K +TLTE++I C+ DE
Sbjct: 482 RLLQKK--KNLEKRSKLDILIEKV----GIKSKPKVIDLTRKEATVETLTETQIHCQKDE 535
Query: 1065 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
KD YLYYF+LQ+PGRT+VF NSI +KRL LL +L+C+PLPLHA+M+Q+QRLKNL+RF
Sbjct: 536 KDFYLYYFLLQYPGRTMVFANSIDCIKRLNSLLVILECNPLPLHANMHQKQRLKNLERFA 595
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
++ + +LL TDVAARGLDIP ++HVIHY VPRTSE Y+HRSGRTARA EGL+L+L+ D
Sbjct: 596 ERESGVLLTTDVAARGLDIPDVQHVIHYQVPRTSETYVHRSGRTARATKEGLSLLLVGPD 655
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHR 1243
++ K++ +LEK + P FPI+ L IK+R++LA+ IE +E ++ D+W +
Sbjct: 656 DMINLKKIYKTLEKDEESPMFPIETKCLEAIKERVNLARKIEKIEFYNSREKHHDSWFKQ 715
Query: 1244 SG 1245
+
Sbjct: 716 AA 717
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 221/610 (36%), Positives = 320/610 (52%), Gaps = 150/610 (24%)
Query: 105 TEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSN---------NEDMFVQMAEWVK 155
+E++ + P K+ ++K+ ++++ ++ T N ++D ++ W
Sbjct: 137 SEDLCTRTPPKKRKNKEKETEESFRERSRHGGAAKTKNWTSAALCGSDDDKQSDVSAWKD 196
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL---- 211
+P ++++AL GF++PT IQ++ +P A+ D++GAAETGSGKTLAFGIP++
Sbjct: 197 LFVPSSVLKALSSLGFESPTPIQALALPPAIRDHMDVLGAAETGSGKTLAFGIPMIHAIL 256
Query: 212 ---------------------------------------TGIVNKLENPTEEDENDSGLE 232
T + N+ + DE DS E
Sbjct: 257 EWKRGTEQSLHDNIDKTPPKVVSLYLPSVEESAKSEDESTAVGNQEGSVEASDEEDSSAE 316
Query: 233 EEAEEVLEEL-------EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 285
+ +E+ E+ E + L ++L PTRELA+QV++HI K+
Sbjct: 317 DGSEDQDEKTGSVCTVKNAERCVEEQLAGGRSRPLLGMVLTPTRELAVQVKHHIDAVTKF 376
Query: 286 TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDET 345
T +K A +VGGM+ +KQ R+L +CP I++ATPGRLW+ I+ H HL L + LVIDE
Sbjct: 377 TDIKTAILVGGMAQQKQKRMLKRCPEIIIATPGRLWDLIKEKHPHLLNLRHLRCLVIDEA 436
Query: 346 DRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFV 405
DRM+E G HF EL+++L+ + T + RQTFV
Sbjct: 437 DRMVERG----------------------------HFAELESLLEMLNTTHFNPKRQTFV 468
Query: 406 FSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKT 463
FSATLT HSL + L KK K L+ K K+ L EK+GI
Sbjct: 469 FSATLTLTHSLPSRLLQKK---------------KNLE-----KRSKLDILIEKVGIKS- 507
Query: 464 LTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTES 523
PK++DLT K +TLTE+
Sbjct: 508 ----------------------------------------KPKVIDLTRKEATVETLTET 527
Query: 524 KILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+I C+ DEKD YLYYF+LQ+PGRT+VF NSI +KRL LL +L+C+PLPLHA+M+Q+QR
Sbjct: 528 QIHCQKDEKDFYLYYFLLQYPGRTMVFANSIDCIKRLNSLLVILECNPLPLHANMHQKQR 587
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
LKNL+RF ++ + +LL TDVAARGLDIP ++HVIHY VPRTSE Y+HRSGRTARA EGL
Sbjct: 588 LKNLERFAERESGVLLTTDVAARGLDIPDVQHVIHYQVPRTSETYVHRSGRTARATKEGL 647
Query: 644 TVVLIESDEI 653
+++L+ D++
Sbjct: 648 SLLLVGPDDM 657
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
LV++E + +PL+ M K +L F ES + L I ++ I P
Sbjct: 568 LVILECNPLPLHANMHQKQRLK-NLERFAERESGVLLTTDVAARGLDIPDVQHVIHYQVP 626
Query: 1238 ---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
+ ++HRSGRTARA EGL+L+L+ D++ K++ +LEK + P FPI+ L I
Sbjct: 627 RTSETYVHRSGRTARATKEGLSLLLVGPDDMINLKKIYKTLEKDEESPMFPIETKCLEAI 686
Query: 1295 KKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDI 1329
K+R++LA+ IE +E ++ D+W ++AA+ +++
Sbjct: 687 KERVNLARKIEKIEFYNSREKHHDSWFKQAAEALEV 722
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
++L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+L +CP I++ATPG L
Sbjct: 353 GMVLTPTRELAVQVKHHIDAVTKFTDIKTAILVGGMAQQKQKRMLKRCPEIIIATPGRL 411
>gi|321458546|gb|EFX69612.1| hypothetical protein DAPPUDRAFT_300875 [Daphnia pulex]
Length = 621
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 246/557 (44%), Positives = 347/557 (62%), Gaps = 74/557 (13%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M W +P+ I+RA+++ GF+TPT IQ +P+A+ RKDIVGAAETGSGKTLAFGIP
Sbjct: 38 MIIWKAMYLPDPIVRAVWELGFQTPTAIQLACLPTAMKGRKDIVGAAETGSGKTLAFGIP 97
Query: 827 ILTGI------------------------------------------VNKLENPTEEDEN 844
IL GI V K EED +
Sbjct: 98 ILNGILKDKEFELKKLKQNEEESEDSDDADDSDGNNDDGHTSNKKQRVEKKAAVAEEDSD 157
Query: 845 DSGLEEE-------AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 897
DSG + E V + + E N + K + KL ALI+ PTRELA+Q++ H+
Sbjct: 158 DSGGQMEDFGGGIGRVRVFDVV--ELGNQKTKIIKGQKKLRALIITPTRELAVQIEKHLK 215
Query: 898 DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYL 957
KYT + + V+GGM+ KQ RIL+K P I++ TPGRLWE I+ G+ HL+++ I YL
Sbjct: 216 AVAKYTDISICLVIGGMAAPKQERILSKGPDIVIGTPGRLWEMIEGGNSHLSQIKDIRYL 275
Query: 958 VIDETDRMIESGHFPELKNILDRVTMTETSQP-RQTFVFSATLT--HSLKNSL-NLKKGQ 1013
+DETDR++E GHF E++ +L+ + E + RQ FVFSATLT H L N L NLK +
Sbjct: 276 ALDETDRLLEKGHFAEVRTLLEHINKDEEKKRWRQNFVFSATLTLAHDLPNRLGNLKSKK 335
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIK-SPKIVDLTEKIGITK--TLTESKILCKH-DEKDSYL 1069
K + +L L+ ++ K+VDLT ++ K +L+E K+ ++KD YL
Sbjct: 336 KKEAM------KLDKLLSLVGVRPKAKVVDLTTQVRSLKPASLSEMKLYSATVEDKDYYL 389
Query: 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129
YYF+ +PGRTLVFCNSI++V+RLT + T+L+ +PLPLHA M+Q+QRLK+L+RF +N+
Sbjct: 390 YYFLRHNPGRTLVFCNSINNVRRLTSVFTLLETNPLPLHAQMHQKQRLKHLERFSSLDNA 449
Query: 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLY 1189
+L+ATDVAARGLDIP ++HV+H+ VPRTSE Y+HRSGRTARA+ EGL+L+LIE +E Y
Sbjct: 450 LLIATDVAARGLDIPHVQHVVHFQVPRTSENYVHRSGRTARASREGLSLILIEPEEATTY 509
Query: 1190 IKMFNSLEK-KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLHRSGRT 1247
K+ ++L+K K DLPD+ +D + + IK+R++LAK+IE LE + K+ R D +W+ +
Sbjct: 510 RKLCSTLKKDKNDLPDYDVDMRIFAAIKQRVNLAKAIESLEHRTKRERSDKSWMKQMAEE 569
Query: 1248 ARANNEGLTLVLIESDE 1264
A LV+ ESD+
Sbjct: 570 A-------DLVISESDQ 579
Score = 300 bits (769), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 203/561 (36%), Positives = 283/561 (50%), Gaps = 151/561 (26%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M W +P+ I+RA+++ GF+TPT IQ +P+A+ RKDIVGAAETGSGKTLAFGIP
Sbjct: 38 MIIWKAMYLPDPIVRAVWELGFQTPTAIQLACLPTAMKGRKDIVGAAETGSGKTLAFGIP 97
Query: 210 ILTGI------------------------------------------VNKLENPTEEDEN 227
IL GI V K EED +
Sbjct: 98 ILNGILKDKEFELKKLKQNEEESEDSDDADDSDGNNDDGHTSNKKQRVEKKAAVAEEDSD 157
Query: 228 DSGLEEE-------AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 280
DSG + E V + + E N + K + KL ALI+ PTRELA+Q++ H+
Sbjct: 158 DSGGQMEDFGGGIGRVRVFDVV--ELGNQKTKIIKGQKKLRALIITPTRELAVQIEKHLK 215
Query: 281 DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYL 340
KYT + + V+GGM+ KQ RIL+K P I++ TPGRLWE I+ G+ HL+++ I YL
Sbjct: 216 AVAKYTDISICLVIGGMAAPKQERILSKGPDIVIGTPGRLWEMIEGGNSHLSQIKDIRYL 275
Query: 341 VIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQP 400
+DETDR++E GHF E++ +L+ + E E +
Sbjct: 276 ALDETDRLLEKGHFAEVRTLLEHINKDE---------------------------EKKRW 308
Query: 401 RQTFVFSATLT--HSLKNSL-NLKKGQSKSKKVSKGDPSIKRLQDLLNIK-SPKIVDLTE 456
RQ FVFSATLT H L N L NLK + K + +L L+ ++ K+VDLT
Sbjct: 309 RQNFVFSATLTLAHDLPNRLGNLKSKKKKEAM------KLDKLLSLVGVRPKAKVVDLTT 362
Query: 457 KIGITK--TLTESKILCKH-DEKDSYLYYFILQHPGRTL--CEEIQDLLNIKSPKIVDLT 511
++ K +L+E K+ ++KD YLYYF+ +PGRTL C I ++ + S
Sbjct: 363 QVRSLKPASLSEMKLYSATVEDKDYYLYYFLRHNPGRTLVFCNSINNVRRLTS------- 415
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
TL E+ L H + + +RL L
Sbjct: 416 -----VFTLLETNPLPLHAQ----------------------MHQKQRLKHL-------- 440
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+R +LD N++L+ATDVAARGLDIP ++HV+H+ VPRTSE Y+HR
Sbjct: 441 ----------ERFSSLD------NALLIATDVAARGLDIPHVQHVVHFQVPRTSENYVHR 484
Query: 632 SGRTARANNEGLTVVLIESDE 652
SGRTARA+ EGL+++LIE +E
Sbjct: 485 SGRTARASREGLSLILIEPEE 505
Score = 101 bits (251), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 116/207 (56%), Gaps = 13/207 (6%)
Query: 1177 TLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR 1236
L+E++ +PL+ +M K L F ++ L + I +++ +
Sbjct: 416 VFTLLETNPLPLHAQMHQKQRLK-HLERFSSLDNALLIATDVAARGLDIPHVQHVVHFQV 474
Query: 1237 P---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLS 1292
P +N++HRSGRTARA+ EGL+L+LIE +E Y K+ ++L+K K DLPD+ +D + +
Sbjct: 475 PRTSENYVHRSGRTARASREGLSLILIEPEEATTYRKLCSTLKKDKNDLPDYDVDMRIFA 534
Query: 1293 LIKKRIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIII-------DDENLIQPNQLLI 1344
IK+R++LAK+IE LE + K+ R D +W+++ A++ D++I D + Q + L+
Sbjct: 535 AIKQRVNLAKAIESLEHRTKRERSDKSWMKQMAEEADLVISESDQDSDSGSAAQSHSQLL 594
Query: 1345 FESRNLRYSWDALILAPTRELAIQVQN 1371
E +N R L+ P + L V+N
Sbjct: 595 TELKNKRKELTKLLARPFKRLLSNVRN 621
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+Q++ H+ KYT + + V+GGM+ KQ RIL+K P I++ TPG L
Sbjct: 197 ALIITPTRELAVQIEKHLKAVAKYTDISICLVIGGMAAPKQERILSKGPDIVIGTPGRL 255
>gi|147904244|ref|NP_001082400.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Xenopus laevis]
gi|50418383|gb|AAH77543.1| LOC398446 protein [Xenopus laevis]
Length = 706
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 237/524 (45%), Positives = 342/524 (65%), Gaps = 46/524 (8%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
+S N D+ + W ++P+ +++AL GF PT IQ++ +PSA+ + DI+GAAETG
Sbjct: 102 SSKNADV----SAWKNLHVPKVVLKALSFLGFTCPTPIQALALPSAIRDKMDILGAAETG 157
Query: 817 SGKTLAFGIPILTGI-----------------------VNKLENPTEEDENDSGLEEEAE 853
SGKTLAF IP++ I VN + TE+ E D E+ E
Sbjct: 158 SGKTLAFAIPMIHSILEWQKHQESGAAEGETKEEPTSDVNNEIDATEKQEQDMSENEDVE 217
Query: 854 EVLEELEEESAN-TTEFVKKTRNK---------LYALILAPTRELAIQVQNHILDAGKYT 903
+V E+ ++ S N F + +K L L++ PTRELA+QV++HI K+T
Sbjct: 218 QV-EDNDDVSENFDINFNDMSSSKSGTWGKERPLLGLVVTPTRELAVQVKHHIDAVAKFT 276
Query: 904 PVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETD 963
+K A +VGGM+++KQ R+L + P I++ATPGRLWE I H HL L ++ LVIDE D
Sbjct: 277 GIKTAIIVGGMASQKQQRLLGRRPEIVIATPGRLWELIGERHPHLCNLRRLRCLVIDEAD 336
Query: 964 RMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSK 1021
RM+E GH+ EL +L+ ++ + RQTFVFSATLT H L KK + +KV K
Sbjct: 337 RMVEKGHYAELSQLLELLSEVHYNPKRQTFVFSATLTLIHQAPTRLLQKK---RFQKVDK 393
Query: 1022 GDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 1080
D + L + + +K+ PK++DLT K +TLTE++I C DEKD YLYYF+LQ+PGR+
Sbjct: 394 -DSKLVSLMEKIGMKAKPKVIDLTRKQATVETLTETRIHCATDEKDFYLYYFLLQYPGRS 452
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
+VF NSI +KRLT LLT+L+C+PLPLHA+M+Q+QRLKNL+RF ++ + +LL TDVAARG
Sbjct: 453 MVFANSIDCIKRLTSLLTILECNPLPLHANMHQKQRLKNLERFAERESCVLLTTDVAARG 512
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
LDIP ++HVIHY VPRTSE Y+HRSGRTARA+++GLTL+LI +++ + K+F +LEK
Sbjct: 513 LDIPNVQHVIHYQVPRTSETYVHRSGRTARASSDGLTLLLIGPNDVINFKKIFRTLEKNE 572
Query: 1201 DLPDFPIDESVLSLIKKRIDLAKSIEYLES-KIKKNRPDNWLHR 1243
+LP FP++ + +S K+R+ LA+ IE +E K + ++W+ +
Sbjct: 573 ELPIFPVEPNCMSGTKERVSLARMIEKMEYFNCKAKQQNSWIQQ 616
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 221/549 (40%), Positives = 310/549 (56%), Gaps = 127/549 (23%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
+S N D+ + W ++P+ +++AL GF PT IQ++ +PSA+ + DI+GAAETG
Sbjct: 102 SSKNADV----SAWKNLHVPKVVLKALSFLGFTCPTPIQALALPSAIRDKMDILGAAETG 157
Query: 200 SGKTLAFGIPILTGI-----------------------VNKLENPTEEDENDSGLEEEAE 236
SGKTLAF IP++ I VN + TE+ E D E+ E
Sbjct: 158 SGKTLAFAIPMIHSILEWQKHQESGAAEGETKEEPTSDVNNEIDATEKQEQDMSENEDVE 217
Query: 237 EVLEELEEESAN-TTEFVKKTRNK---------LYALILAPTRELAIQVQNHILDAGKYT 286
+V E+ ++ S N F + +K L L++ PTRELA+QV++HI K+T
Sbjct: 218 QV-EDNDDVSENFDINFNDMSSSKSGTWGKERPLLGLVVTPTRELAVQVKHHIDAVAKFT 276
Query: 287 PVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETD 346
+K A +VGGM+++KQ R+L + P I++ATPGRLWE I H HL L ++ LVIDE D
Sbjct: 277 GIKTAIIVGGMASQKQQRLLGRRPEIVIATPGRLWELIGERHPHLCNLRRLRCLVIDEAD 336
Query: 347 RMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406
RM+E G H+ EL +L+ ++ + RQTFVF
Sbjct: 337 RMVEKG----------------------------HYAELSQLLELLSEVHYNPKRQTFVF 368
Query: 407 SATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 464
SATLT H Q+ ++ + K KR Q + K K+V L EKIG+
Sbjct: 369 SATLTLIH-----------QAPTRLLQK-----KRFQKV--DKDSKLVSLMEKIGMKA-- 408
Query: 465 TESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESK 524
PK++DLT K +TLTE++
Sbjct: 409 ---------------------------------------KPKVIDLTRKQATVETLTETR 429
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
I C DEKD YLYYF+LQ+PGR++VF NSI +KRLT LLT+L+C+PLPLHA+M+Q+QRL
Sbjct: 430 IHCATDEKDFYLYYFLLQYPGRSMVFANSIDCIKRLTSLLTILECNPLPLHANMHQKQRL 489
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
KNL+RF ++ + +LL TDVAARGLDIP ++HVIHY VPRTSE Y+HRSGRTARA+++GLT
Sbjct: 490 KNLERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVPRTSETYVHRSGRTARASSDGLT 549
Query: 645 VVLIESDEI 653
++LI +++
Sbjct: 550 LLLIGPNDV 558
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
L ++E + +PL+ M K +L F ES + L I ++ I P
Sbjct: 469 LTILECNPLPLHANMHQKQRLK-NLERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVP 527
Query: 1238 ---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
+ ++HRSGRTARA+++GLTL+LI +++ + K+F +LEK +LP FP++ + +S
Sbjct: 528 RTSETYVHRSGRTARASSDGLTLLLIGPNDVINFKKIFRTLEKNEELPIFPVEPNCMSGT 587
Query: 1295 KKRIDLAKSIEYLES-KIKKNRPDNWLEK 1322
K+R+ LA+ IE +E K + ++W+++
Sbjct: 588 KERVSLARMIEKMEYFNCKAKQQNSWIQQ 616
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L++ PTRELA+QV++HI K+T +K A +VGGM+++KQ R+L + P I++ATPG L
Sbjct: 252 GLVVTPTRELAVQVKHHIDAVAKFTGIKTAIIVGGMASQKQQRLLGRRPEIVIATPGRL 310
>gi|198437354|ref|XP_002125842.1| PREDICTED: similar to CG9143 CG9143-PA [Ciona intestinalis]
Length = 719
Score = 435 bits (1118), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/492 (46%), Positives = 324/492 (65%), Gaps = 25/492 (5%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V M+ W +PET+++AL + F P IQ +P A+ ++DI+GAAETGSGKTLAFG
Sbjct: 160 VDMSAWQNLYVPETVLKALAELRFTKPMPIQEQCIPVAIRDKRDILGAAETGSGKTLAFG 219
Query: 825 IPILTGIV-----NKLENP--TEEDENDSGLE--EEAEEVLEELEEESANTTEFVKKTRN 875
IP+L ++ N LEN E DE+D + E+AE V +E EE+ T
Sbjct: 220 IPLLHHLMEDRERNLLENTENAEIDEDDEHMSDFEDAEPVSKEEIEETQPT--------K 271
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
L AL+L PTRELAIQV+ H+ K+T + VVGGM+ +KQ+R+LNK P I++ATPG
Sbjct: 272 ALPALVLTPTRELAIQVKKHLTQVAKHTKLWSTVVVGGMAQQKQIRLLNKEPDIVIATPG 331
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RLWE ++ GH +L+ ++K+ YLVIDE DRM+E GHF EL +L+ + + ++ RQTF+F
Sbjct: 332 RLWELLESGHPYLSTIHKLRYLVIDEADRMLEHGHFEELNKLLEVINLKKSKTKRQTFIF 391
Query: 996 SATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKT 1052
SATLT H N N S + K D + +L + +++ P + DLT K +
Sbjct: 392 SATLTTVHFTPNRPNFPTQASSNTK----DTKLSKLMKKIGVRNKPFVADLTTKKLTAEK 447
Query: 1053 LTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
L+E+KI+C+ EKD YLYYFI HPGRTL+F NSI + L+ +L L C+PL +HA M
Sbjct: 448 LSEAKIICQPKEKDFYLYYFIKSHPGRTLIFTNSIDCIFHLSGVLDALGCNPLHIHAKMQ 507
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
QRQRLK+LDRF++ N+I++A+DVAARGLDIPG+++VIHY VPRT E YIHRSGR+AR+
Sbjct: 508 QRQRLKHLDRFQENPNAIMIASDVAARGLDIPGVKYVIHYQVPRTMETYIHRSGRSARSG 567
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKI 1232
+GL+L+ + SDE+ Y ++ SL+K+ LP F I++S ++ I+K + LA+ ++ L +
Sbjct: 568 EDGLSLLFVSSDEMSFYKRICRSLDKEDGLPLFLINDSYMAAIRKMVTLAREVDSLSHRE 627
Query: 1233 KKNRPDN-WLHR 1243
KK R N W +
Sbjct: 628 KKVRLHNDWFSK 639
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 212/517 (41%), Positives = 290/517 (56%), Gaps = 106/517 (20%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V M+ W +PET+++AL + F P IQ +P A+ ++DI+GAAETGSGKTLAFG
Sbjct: 160 VDMSAWQNLYVPETVLKALAELRFTKPMPIQEQCIPVAIRDKRDILGAAETGSGKTLAFG 219
Query: 208 IPILTGIV-----NKLENP--TEEDENDSGLE--EEAEEVLEELEEESANTTEFVKKTRN 258
IP+L ++ N LEN E DE+D + E+AE V +E EE+ T
Sbjct: 220 IPLLHHLMEDRERNLLENTENAEIDEDDEHMSDFEDAEPVSKEEIEETQPT--------K 271
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
L AL+L PTRELAIQV+ H+ K+T + VVGGM+ +KQ+R+LNK P I++ATPG
Sbjct: 272 ALPALVLTPTRELAIQVKKHLTQVAKHTKLWSTVVVGGMAQQKQIRLLNKEPDIVIATPG 331
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RLWE ++ GH +L+ ++K+ YLVIDE DRM+E G
Sbjct: 332 RLWELLESGHPYLSTIHKLRYLVIDEADRMLEHG-------------------------- 365
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPS 436
HF EL +L+ + + ++ RQTF+FSATLT H N N S
Sbjct: 366 --HFEELNKLLEVINLKKSKTKRQTFIFSATLTTVHFTPNRPNFPTQASS---------- 413
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
N K K+ L +KIG+
Sbjct: 414 --------NTKDTKLSKLMKKIGVRN---------------------------------- 431
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556
P + DLT K + L+E+KI+C+ EKD YLYYFI HPGRTL+F NSI
Sbjct: 432 -------KPFVADLTTKKLTAEKLSEAKIICQPKEKDFYLYYFIKSHPGRTLIFTNSIDC 484
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616
+ L+ +L L C+PL +HA M QRQRLK+LDRF++ N+I++A+DVAARGLDIPG+++V
Sbjct: 485 IFHLSGVLDALGCNPLHIHAKMQQRQRLKHLDRFQENPNAIMIASDVAARGLDIPGVKYV 544
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
IHY VPRT E YIHRSGR+AR+ +GL+++ + SDE+
Sbjct: 545 IHYQVPRTMETYIHRSGRSARSGEDGLSLLFVSSDEM 581
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELAIQV+ H+ K+T + VVGGM+ +KQ+R+LNK P I++ATPG L
Sbjct: 275 ALVLTPTRELAIQVKKHLTQVAKHTKLWSTVVVGGMAQQKQIRLLNKEPDIVIATPGRL 333
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+ ++HRSGR+AR+ +GL+L+ + SDE+ Y ++ SL+K+ LP F I++S ++ I+K
Sbjct: 554 ETYIHRSGRSARSGEDGLSLLFVSSDEMSFYKRICRSLDKEDGLPLFLINDSYMAAIRKM 613
Query: 1298 IDLAKSIEYLESKIKKNRPDN-WLEK 1322
+ LA+ ++ L + KK R N W K
Sbjct: 614 VTLAREVDSLSHREKKVRLHNDWFSK 639
>gi|156404211|ref|XP_001640301.1| predicted protein [Nematostella vectensis]
gi|156227434|gb|EDO48238.1| predicted protein [Nematostella vectensis]
Length = 566
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/485 (46%), Positives = 309/485 (63%), Gaps = 53/485 (10%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M EW + I+RAL +GF PT IQS+ +P ALL +DI+GAAETGSGKTLAFGIP
Sbjct: 1 MPEWEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIP 60
Query: 827 ILTGIVNKLENPTEEDEND--SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
I+ I + E+ +D S LE + +L ALI+AP
Sbjct: 61 IIQHIEAYKKRKAEQSPSDKESDLESQGYPLL----------------------ALIMAP 98
Query: 885 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
TRELA+QV++H++ A KYT VKVA +VGGM+ KQ R+L + P I+VATPGRLWE I
Sbjct: 99 TRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLKQRPEIVVATPGRLWELISQQ 158
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS----------QPR---- 990
H++ + + YLVIDE DRM+E GH+ EL +IL+ + + ++ +P
Sbjct: 159 EEHVSNIQLLRYLVIDEADRMVEQGHYEELSSILELIHLKKSGNMEVDQEDAERPSNSSK 218
Query: 991 -------QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI--KSPKIV 1041
Q F+FSATLT L S K + + K VSKG+ + L D +++ K K++
Sbjct: 219 TPEKARLQKFIFSATLT--LPKSF---KKRGREKTVSKGE-LLASLMDKIHLERKRSKVI 272
Query: 1042 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 1101
D+T G +TLTE+KI C ++KD YLYYF+L++PGRTLVF N+I V+RLT +L +++
Sbjct: 273 DVTSSRGTVETLTEAKITCTKEDKDVYLYYFLLKYPGRTLVFANTIDCVRRLTSILRLVQ 332
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
+PLPLHASM QRQRLKNLDRF+ N +LLATDVAARGLDI IEHVIHY VP+ E+Y
Sbjct: 333 LNPLPLHASMQQRQRLKNLDRFKASNTGLLLATDVAARGLDIANIEHVIHYQVPKDPEVY 392
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDL 1221
+HRSGRTARA++EGL++VL+ +++ Y K +L DL FP+D S L I+ R+ +
Sbjct: 393 VHRSGRTARASHEGLSVVLVGPEDLAHYRKTMKTLNNGEDLGSFPVDVSYLPGIRNRLSI 452
Query: 1222 AKSIE 1226
A+ I+
Sbjct: 453 ARQID 457
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 215/508 (42%), Positives = 293/508 (57%), Gaps = 95/508 (18%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M EW + I+RAL +GF PT IQS+ +P ALL +DI+GAAETGSGKTLAFGIP
Sbjct: 1 MPEWEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIP 60
Query: 210 ILTGIVNKLENPTEEDEND--SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
I+ I + E+ +D S LE + +L ALI+AP
Sbjct: 61 IIQHIEAYKKRKAEQSPSDKESDLESQGYPLL----------------------ALIMAP 98
Query: 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
TRELA+QV++H++ A KYT VKVA +VGGM+ KQ R+L + P I+VATPGRLWE I
Sbjct: 99 TRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLKQRPEIVVATPGRLWELISQQ 158
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
H++ + + YLVIDE DRM+E G H+ EL +
Sbjct: 159 EEHVSNIQLLRYLVIDEADRMVEQG----------------------------HYEELSS 190
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD--PSIKRLQDLLN 445
IL+ L H LK S N++ Q +++ S P RLQ +
Sbjct: 191 ILE-------------------LIH-LKKSGNMEVDQEDAERPSNSSKTPEKARLQKFIF 230
Query: 446 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSP 505
+ + +K G KT+++ ++L +L ++I L K
Sbjct: 231 SATLTLPKSFKKRGREKTVSKGELLA-------------------SLMDKIH--LERKRS 269
Query: 506 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 565
K++D+T G +TLTE+KI C ++KD YLYYF+L++PGRTLVF N+I V+RLT +L
Sbjct: 270 KVIDVTSSRGTVETLTEAKITCTKEDKDVYLYYFLLKYPGRTLVFANTIDCVRRLTSILR 329
Query: 566 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625
+++ +PLPLHASM QRQRLKNLDRF+ N +LLATDVAARGLDI IEHVIHY VP+
Sbjct: 330 LVQLNPLPLHASMQQRQRLKNLDRFKASNTGLLLATDVAARGLDIANIEHVIHYQVPKDP 389
Query: 626 EIYIHRSGRTARANNEGLTVVLIESDEI 653
E+Y+HRSGRTARA++EGL+VVL+ +++
Sbjct: 390 EVYVHRSGRTARASHEGLSVVLVGPEDL 417
Score = 82.4 bits (202), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 49/63 (77%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y ALI+APTRELA+QV++H++ A KYT VKVA +VGGM+ KQ R+L + P I+VATP
Sbjct: 89 YPLLALIMAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLKQRPEIVVATP 148
Query: 1412 GAL 1414
G L
Sbjct: 149 GRL 151
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 93/164 (56%), Gaps = 7/164 (4%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI----KKRIDLAKSIEYLESKIK 1233
L L++ + +PL+ M ++ +L F + L L + +D+A + ++
Sbjct: 328 LRLVQLNPLPLHASM-QQRQRLKNLDRFKASNTGLLLATDVAARGLDIANIEHVIHYQVP 386
Query: 1234 KNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSL 1293
K+ P+ ++HRSGRTARA++EGL++VL+ +++ Y K +L DL FP+D S L
Sbjct: 387 KD-PEVYVHRSGRTARASHEGLSVVLVGPEDLAHYRKTMKTLNNGEDLGSFPVDVSYLPG 445
Query: 1294 IKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
I+ R+ +A+ I+ E KK ++W+ +AK MDI +D++ L
Sbjct: 446 IRNRLSIARQIDKEELKVSKKKSSNSWILNSAKAMDIEVDEDLL 489
>gi|224051667|ref|XP_002200206.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Taeniopygia guttata]
Length = 796
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 241/548 (43%), Positives = 350/548 (63%), Gaps = 53/548 (9%)
Query: 740 KKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVM 799
KK + +T+ E+L T D+ + W +PE +++AL GF PT IQ++ +
Sbjct: 173 KKVKNWTT---EVLSASTDQKADV----SAWKDLFVPEPVLQALSYLGFSAPTPIQALAL 225
Query: 800 PSALLARKDIVGAAETGSGKTLAFGIPILTGIV--------------------NKLENPT 839
PSA+ D++GAAETGSGKTLAF IP++ ++ + P
Sbjct: 226 PSAIRDNMDVLGAAETGSGKTLAFAIPMIHSVLQWQKSSNSTTRNDSVSKESHQHHDEPR 285
Query: 840 EEDEN-----------DSGLEEEAE------EVLEELEEESANTTEFVKKTRNK-LYALI 881
EDE+ DSG E++A +VLE +E + + T + + L L+
Sbjct: 286 WEDEDEAEKLTHQQAEDSGDEDDASFTTGCVKVLENVEFDCDDETHTGDSNKKRPLLGLV 345
Query: 882 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++ATPGRLWE +
Sbjct: 346 LTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRLWELV 405
Query: 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001
+ H HL+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQTFVFSATLT
Sbjct: 406 KERHPHLSNLRQLRCLVIDEADRMVEKGHFLELSQLLEILNDSQYNPQRQTFVFSATLT- 464
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILC 1060
L + + Q K+ K ++ L + + IK PK++DLT K +TLTE++I C
Sbjct: 465 -LVHQTPTRVLQKKNAKKMDKKTKLELLMEKVGIKGKPKVIDLTRKEATVETLTETRIHC 523
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
+EKD YLYYF+LQ+PGRT+VF NSI VKRL+ LLT+L C PLPLHA+M+Q+QRLKNL
Sbjct: 524 NTNEKDYYLYYFLLQYPGRTMVFANSIDCVKRLSSLLTILNCDPLPLHANMHQKQRLKNL 583
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+RF + + +LL TDVAARGLDIP ++HVIHY VPRTSE+Y+HRSGRTARA NEGL+L+L
Sbjct: 584 ERFAQRESCVLLTTDVAARGLDIPNVQHVIHYQVPRTSELYVHRSGRTARAANEGLSLLL 643
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRP 1237
I +++ + K++ +LEK +LP FP+D ++ IK+R++LA+ I E+ S+ K++
Sbjct: 644 IGPEDLINFRKIYKTLEKSEELPIFPVDAKCMTSIKERMNLARQIEKAEFFNSRAKQH-- 701
Query: 1238 DNWLHRSG 1245
++WL ++
Sbjct: 702 NSWLQQAA 709
Score = 319 bits (817), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 213/570 (37%), Positives = 306/570 (53%), Gaps = 132/570 (23%)
Query: 123 KKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVM 182
KK + +T+ E+L T D+ + W +PE +++AL GF PT IQ++ +
Sbjct: 173 KKVKNWTT---EVLSASTDQKADV----SAWKDLFVPEPVLQALSYLGFSAPTPIQALAL 225
Query: 183 PSALLARKDIVGAAETGSGKTLAFGIPILTGIV--------------------NKLENPT 222
PSA+ D++GAAETGSGKTLAF IP++ ++ + P
Sbjct: 226 PSAIRDNMDVLGAAETGSGKTLAFAIPMIHSVLQWQKSSNSTTRNDSVSKESHQHHDEPR 285
Query: 223 EEDEN-----------DSGLEEEAE------EVLEELEEESANTTEFVKKTRNK-LYALI 264
EDE+ DSG E++A +VLE +E + + T + + L L+
Sbjct: 286 WEDEDEAEKLTHQQAEDSGDEDDASFTTGCVKVLENVEFDCDDETHTGDSNKKRPLLGLV 345
Query: 265 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 324
L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++ATPGRLWE +
Sbjct: 346 LTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRLWELV 405
Query: 325 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ H HL+ L ++ LVIDE DRM+E GHF EL +L + + +S + P+
Sbjct: 406 KERHPHLSNLRQLRCLVIDEADRMVEKGHFLELSQLL------------EILNDSQYNPQ 453
Query: 385 LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
RQTFVFSATLT L + + Q K+ K ++ L + +
Sbjct: 454 ----------------RQTFVFSATLT--LVHQTPTRVLQKKNAKKMDKKTKLELLMEKV 495
Query: 445 NIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
IK PK++DLT K +TLTE++I C +EKD YLYYF+LQ+PGRT+
Sbjct: 496 GIKGKPKVIDLTRKEATVETLTETRIHCNTNEKDYYLYYFLLQYPGRTMV---------- 545
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
I K L S +L T++ C+ +
Sbjct: 546 ------FANSIDCVKRL--SSLL--------------------TILNCDPL--------- 568
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
PLHA+M+Q+QRLKNL+RF + + +LL TDVAARGLDIP ++HVIHY VPR
Sbjct: 569 ---------PLHANMHQKQRLKNLERFAQRESCVLLTTDVAARGLDIPNVQHVIHYQVPR 619
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEI 653
TSE+Y+HRSGRTARA NEGL+++LI +++
Sbjct: 620 TSELYVHRSGRTARAANEGLSLLLIGPEDL 649
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 97/166 (58%), Gaps = 9/166 (5%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
L ++ D +PL+ M K +L F ES + L I ++ I P
Sbjct: 560 LTILNCDPLPLHANMHQKQRLK-NLERFAQRESCVLLTTDVAARGLDIPNVQHVIHYQVP 618
Query: 1238 DN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
++HRSGRTARA NEGL+L+LI +++ + K++ +LEK +LP FP+D ++ I
Sbjct: 619 RTSELYVHRSGRTARAANEGLSLLLIGPEDLINFRKIYKTLEKSEELPIFPVDAKCMTSI 678
Query: 1295 KKRIDLAKSI---EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLI 1337
K+R++LA+ I E+ S+ K++ ++WL++AA+ +++ +DD+ L+
Sbjct: 679 KERMNLARQIEKAEFFNSRAKQH--NSWLQQAAEALEMDLDDDMLM 722
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++ATPG L
Sbjct: 343 GLVLTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRL 401
>gi|149641853|ref|XP_001511203.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Ornithorhynchus
anatinus]
Length = 812
Score = 425 bits (1092), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/541 (42%), Positives = 333/541 (61%), Gaps = 60/541 (11%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
S + D M+ W +P+ ++RAL GF+ PT IQ++ + A+ DI+GAAETGS
Sbjct: 191 SGSADGETDMSAWKDLFVPKPVLRALSSLGFEAPTPIQALTLTPAIRDNLDILGAAETGS 250
Query: 818 GKTLAFGIPILTGIV--------------------NKLENPTEEDEN---------DSGL 848
GKTLAF IP++ ++ L+ T D N D L
Sbjct: 251 GKTLAFAIPMIHSVLRWRKENDTKGDKAGAPRVPEGSLDEATASDGNRSSCRDANWDPAL 310
Query: 849 EEEAE----------------EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ + E E L+ E + K + L L+L PTRELA+QV
Sbjct: 311 DSDTEGDGSNGDESRPVGGRTEPLDPKSELGSAGAAPGAKKASCLLGLVLTPTRELAVQV 370
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
++HI ++T +K A +VGGM+ +KQ R+LN+ P I++ATPGRLWE I+ H HL+ L
Sbjct: 371 KHHIDAVARFTGIKTALLVGGMAAQKQQRVLNRRPEIVIATPGRLWELIKEKHPHLSNLR 430
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLK 1010
++ LVIDE DRM+E GHF EL +L+ + ++ + RQTFVFSATLT H + + K
Sbjct: 431 RLRCLVIDEADRMVERGHFAELSQLLEMLNDSQYNPRRQTFVFSATLTLVHEVPARVFQK 490
Query: 1011 KGQSKSKKVSKGDPSIKRLQDLLNIK---SPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
K K K D K Q + I PK++DLT K + LTE++I C+ +EKD
Sbjct: 491 K-----KHAHKLDTKTKLDQLVQKIGMRGKPKVIDLTRKEATVEALTETRIHCEAEEKDF 545
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
YLYYF+L++PGRT+VF NSI +KRLT LLT+L+ PLPLHA+M+Q+QRLKNL+RF +++
Sbjct: 546 YLYYFLLRYPGRTMVFANSIDCIKRLTALLTILERDPLPLHANMHQKQRLKNLERFAERD 605
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
+ +LL TDVAARGLDIP I+HVIHY VPRTSEIY+HRSGRTARA EGL+L+LI +++
Sbjct: 606 DCVLLTTDVAARGLDIPNIQHVIHYQVPRTSEIYVHRSGRTARAAKEGLSLLLIGPNDVL 665
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLHRS 1244
+ K++ +L+K ++P FP++ +++IK+R+++A+ I EY S+ K++ ++W ++
Sbjct: 666 NFRKIYKTLQKDEEIPFFPVETKCMAVIKERVNVARKIEKEEYYNSRAKQH--NSWFQQA 723
Query: 1245 G 1245
Sbjct: 724 A 724
Score = 362 bits (928), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 212/560 (37%), Positives = 298/560 (53%), Gaps = 133/560 (23%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
S + D M+ W +P+ ++RAL GF+ PT IQ++ + A+ DI+GAAETGS
Sbjct: 191 SGSADGETDMSAWKDLFVPKPVLRALSSLGFEAPTPIQALTLTPAIRDNLDILGAAETGS 250
Query: 201 GKTLAFGIPILTGIV--------------------NKLENPTEEDEN---------DSGL 231
GKTLAF IP++ ++ L+ T D N D L
Sbjct: 251 GKTLAFAIPMIHSVLRWRKENDTKGDKAGAPRVPEGSLDEATASDGNRSSCRDANWDPAL 310
Query: 232 EEEAE----------------EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ + E E L+ E + K + L L+L PTRELA+QV
Sbjct: 311 DSDTEGDGSNGDESRPVGGRTEPLDPKSELGSAGAAPGAKKASCLLGLVLTPTRELAVQV 370
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
++HI ++T +K A +VGGM+ +KQ R+LN+ P I++ATPGRLWE I+ H HL+ L
Sbjct: 371 KHHIDAVARFTGIKTALLVGGMAAQKQQRVLNRRPEIVIATPGRLWELIKEKHPHLSNLR 430
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
++ LVIDE DRM+E G HF EL +L+ + +
Sbjct: 431 RLRCLVIDEADRMVERG----------------------------HFAELSQLLEMLNDS 462
Query: 396 ETSQPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVD 453
+ + RQTFVFSAT L H + + KK + L+ K+ K+
Sbjct: 463 QYNPRRQTFVFSATLTLVHEVPARVFQKKKHAHK----------------LDTKT-KLDQ 505
Query: 454 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEK 513
L +KIG+ PK++DLT K
Sbjct: 506 LVQKIGMRG-----------------------------------------KPKVIDLTRK 524
Query: 514 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 573
+ LTE++I C+ +EKD YLYYF+L++PGRT+VF NSI +KRLT LLT+L+ PLP
Sbjct: 525 EATVEALTETRIHCEAEEKDFYLYYFLLRYPGRTMVFANSIDCIKRLTALLTILERDPLP 584
Query: 574 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 633
LHA+M+Q+QRLKNL+RF ++++ +LL TDVAARGLDIP I+HVIHY VPRTSEIY+HRSG
Sbjct: 585 LHANMHQKQRLKNLERFAERDDCVLLTTDVAARGLDIPNIQHVIHYQVPRTSEIYVHRSG 644
Query: 634 RTARANNEGLTVVLIESDEI 653
RTARA EGL+++LI +++
Sbjct: 645 RTARAAKEGLSLLLIGPNDV 664
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 101/167 (60%), Gaps = 11/167 (6%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESVL---SLIKKRIDLAKSIEYLESKIK 1233
L ++E D +PL+ M K +L F D+ VL + + +D+ + ++
Sbjct: 575 LTILERDPLPLHANMHQKQRLK-NLERFAERDDCVLLTTDVAARGLDIPNIQHVIHYQVP 633
Query: 1234 KNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSL 1293
+ + ++HRSGRTARA EGL+L+LI +++ + K++ +L+K ++P FP++ +++
Sbjct: 634 RTS-EIYVHRSGRTARAAKEGLSLLLIGPNDVLNFRKIYKTLQKDEEIPFFPVETKCMAV 692
Query: 1294 IKKRIDLAKSI---EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLI 1337
IK+R+++A+ I EY S+ K++ ++W ++AA+ ++I + ++ L+
Sbjct: 693 IKERVNVARKIEKEEYYNSRAKQH--NSWFQQAAEALEIDLSEDVLM 737
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV++HI ++T +K A +VGGM+ +KQ R+LN+ P I++ATPG L
Sbjct: 357 GLVLTPTRELAVQVKHHIDAVARFTGIKTALLVGGMAAQKQQRVLNRRPEIVIATPGRL 415
>gi|363734223|ref|XP_421338.3| PREDICTED: ATP-dependent RNA helicase DDX24 [Gallus gallus]
Length = 809
Score = 424 bits (1091), Expect = e-115, Method: Compositional matrix adjust.
Identities = 237/548 (43%), Positives = 348/548 (63%), Gaps = 53/548 (9%)
Query: 740 KKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVM 799
KK + +T+ E+L T + D+ + W +P+ +++AL GF PT IQ++ +
Sbjct: 182 KKVKNWTT---EVLSTSTDHKADV----SAWKDLFVPQPVLKALSSLGFSAPTPIQALTL 234
Query: 800 PSALLARKDIVGAAETGSGKTLAFGIPILTGIV--------------------------- 832
PSA+ DI+GAAETGSGKTLAF IP++ ++
Sbjct: 235 PSAIRDNMDILGAAETGSGKTLAFAIPMIHSVLEWQKSNSSASVSDSVSKKPYQHHDEMR 294
Query: 833 ----NKLENPTEEDENDSGLEEEAE------EVLEELEEESANTTEFVKKTRNK-LYALI 881
++ E P + DSG E++A +V E E +S+N V + + L L+
Sbjct: 295 WENDDEAEKPNHQQVEDSGDEDDASFATGCVKVQENTEYDSSNKEHTVGLHKKRPLLGLV 354
Query: 882 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++ATPGRLWE I
Sbjct: 355 LTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRLWELI 414
Query: 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001
+ H HL+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQTFVFSATLT
Sbjct: 415 KERHPHLSNLRQLRCLVIDEADRMVERGHFLELSQLLEVLNDSQYNPKRQTFVFSATLT- 473
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILC 1060
L + + Q K+ K ++ L + + IK PK++DLT K +TL E++I C
Sbjct: 474 -LVHQTPARILQKKNAKKIDKKTKLEMLMEKVGIKGKPKVIDLTRKEATVETLMETRIHC 532
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
+EKD YLYYF+LQ+PGRT+VF NSI +KRL+ LLT+L C P PLHA+M+Q+QRLKNL
Sbjct: 533 DTNEKDYYLYYFLLQYPGRTMVFANSIDCIKRLSSLLTILNCDPFPLHANMHQKQRLKNL 592
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+RF ++ + +LL TDVAARGLDIP ++HVIHY VPRTSE+Y+HRSGRTARA NEGL+L+L
Sbjct: 593 ERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVPRTSELYVHRSGRTARAANEGLSLLL 652
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRP 1237
I D++ + K++ +L+K +LP FP++ ++ IK+R++LA+ I E+ + K++
Sbjct: 653 IGPDDLINFRKIYKTLQKSEELPLFPVETKYMTAIKERVNLARQIEKAEFFNGRAKQH-- 710
Query: 1238 DNWLHRSG 1245
D+WL ++
Sbjct: 711 DSWLQQAA 718
Score = 302 bits (774), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 209/570 (36%), Positives = 299/570 (52%), Gaps = 132/570 (23%)
Query: 123 KKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVM 182
KK + +T+ E+L T + D+ + W +P+ +++AL GF PT IQ++ +
Sbjct: 182 KKVKNWTT---EVLSTSTDHKADV----SAWKDLFVPQPVLKALSSLGFSAPTPIQALTL 234
Query: 183 PSALLARKDIVGAAETGSGKTLAFGIPILTGIV--------------------------- 215
PSA+ DI+GAAETGSGKTLAF IP++ ++
Sbjct: 235 PSAIRDNMDILGAAETGSGKTLAFAIPMIHSVLEWQKSNSSASVSDSVSKKPYQHHDEMR 294
Query: 216 ----NKLENPTEEDENDSGLEEEAE------EVLEELEEESANTTEFVKKTRNK-LYALI 264
++ E P + DSG E++A +V E E +S+N V + + L L+
Sbjct: 295 WENDDEAEKPNHQQVEDSGDEDDASFATGCVKVQENTEYDSSNKEHTVGLHKKRPLLGLV 354
Query: 265 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 324
L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++ATPGRLWE I
Sbjct: 355 LTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRLWELI 414
Query: 325 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ H HL+ L ++ LVIDE DRM+E GHF EL +L + + +S + P+
Sbjct: 415 KERHPHLSNLRQLRCLVIDEADRMVERGHFLELSQLL------------EVLNDSQYNPK 462
Query: 385 LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
RQTFVFSATLT L + + Q K+ K ++ L + +
Sbjct: 463 ----------------RQTFVFSATLT--LVHQTPARILQKKNAKKIDKKTKLEMLMEKV 504
Query: 445 NIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
IK PK++DLT K +TL E++I C +EKD YLYYF+LQ+PGRT+
Sbjct: 505 GIKGKPKVIDLTRKEATVETLMETRIHCDTNEKDYYLYYFLLQYPGRTMV---------- 554
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
I K L S +L T++ C+
Sbjct: 555 ------FANSIDCIKRL--SSLL--------------------TILNCDPF--------- 577
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
PL + QR LKNL+RF ++ + +LL TDVAARGLDIP ++HVIHY VPR
Sbjct: 578 -------PLHANMHQKQR--LKNLERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVPR 628
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEI 653
TSE+Y+HRSGRTARA NEGL+++LI D++
Sbjct: 629 TSELYVHRSGRTARAANEGLSLLLIGPDDL 658
Score = 83.2 bits (204), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 9/158 (5%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
L ++ D PL+ M K +L F ES + L I ++ I P
Sbjct: 569 LTILNCDPFPLHANMHQKQRLK-NLERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVP 627
Query: 1238 DN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
++HRSGRTARA NEGL+L+LI D++ + K++ +L+K +LP FP++ ++ I
Sbjct: 628 RTSELYVHRSGRTARAANEGLSLLLIGPDDLINFRKIYKTLQKSEELPLFPVETKYMTAI 687
Query: 1295 KKRIDLAKSI---EYLESKIKKNRPDNWLEKAAKDMDI 1329
K+R++LA+ I E+ + K++ D+WL++AA+ +++
Sbjct: 688 KERVNLARQIEKAEFFNGRAKQH--DSWLQQAAEALEV 723
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++ATPG L
Sbjct: 352 GLVLTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRL 410
>gi|326920998|ref|XP_003206751.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Meleagris
gallopavo]
Length = 804
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 238/548 (43%), Positives = 349/548 (63%), Gaps = 53/548 (9%)
Query: 740 KKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVM 799
KK + +T+ E+L T + D+ + W +P+ +++AL GF PT IQ++ +
Sbjct: 177 KKVKNWTT---EVLSTSTDHKADV----SAWKDLFVPQPVLKALSSLGFSAPTPIQALTL 229
Query: 800 PSALLARKDIVGAAETGSGKTLAFGIPILTGIV--------------------------- 832
PSA+ DI+GAAETGSGKTLAF IP++ ++
Sbjct: 230 PSAIRDNMDILGAAETGSGKTLAFAIPMIHCVLEWQKSNSSVSISDSVSKKPYQHPDEMR 289
Query: 833 ----NKLENPTEEDENDSGLEEEAE------EVLEELEEESANTTEFVKKTRNK-LYALI 881
+ E P ++ DSG E+ A +V E E +S++ V + + L L+
Sbjct: 290 WESDGETEEPNHQEVEDSGDEDVASFATGCVKVQENAEFDSSDKEHTVGLHKKRPLLGLV 349
Query: 882 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++ATPGRLWE I
Sbjct: 350 LTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRLWELI 409
Query: 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001
+ H HL+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQTFVFSATLT
Sbjct: 410 KEKHPHLSNLRQLRCLVIDEADRMVERGHFLELSQLLEVLNDSQYNPKRQTFVFSATLT- 468
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILC 1060
L + + + Q K+ K ++ L + + IK PK++DLT K +TL E++I C
Sbjct: 469 -LVHQIPTRILQKKNAKKIDKKTKLEMLMEKVGIKGKPKVIDLTRKEATVETLMETRIHC 527
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
+EKD YLYYF+LQ+PGRT+VF NSI +KRL+ LLT+L C PLPLHA+M+Q+QRLKNL
Sbjct: 528 DTNEKDYYLYYFLLQYPGRTMVFANSIDCIKRLSSLLTILNCDPLPLHANMHQKQRLKNL 587
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+RF ++ + +LL TDVAARGLDIP ++HVIHY VPRTSE+Y+HRSGRTARA NEGL+L+L
Sbjct: 588 ERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVPRTSELYVHRSGRTARAANEGLSLLL 647
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRP 1237
I D++ + K++ +LEK +LP FP++ ++ IK+R++LA+ I E+ + K++
Sbjct: 648 IGPDDLINFRKIYKTLEKSEELPFFPVETKYMTAIKERVNLARQIEKAEFFNGRAKQH-- 705
Query: 1238 DNWLHRSG 1245
D+WL ++
Sbjct: 706 DSWLQQAA 713
Score = 312 bits (800), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 212/570 (37%), Positives = 306/570 (53%), Gaps = 132/570 (23%)
Query: 123 KKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVM 182
KK + +T+ E+L T + D+ + W +P+ +++AL GF PT IQ++ +
Sbjct: 177 KKVKNWTT---EVLSTSTDHKADV----SAWKDLFVPQPVLKALSSLGFSAPTPIQALTL 229
Query: 183 PSALLARKDIVGAAETGSGKTLAFGIPILTGIV--------------------------- 215
PSA+ DI+GAAETGSGKTLAF IP++ ++
Sbjct: 230 PSAIRDNMDILGAAETGSGKTLAFAIPMIHCVLEWQKSNSSVSISDSVSKKPYQHPDEMR 289
Query: 216 ----NKLENPTEEDENDSGLEEEAE------EVLEELEEESANTTEFVKKTRNK-LYALI 264
+ E P ++ DSG E+ A +V E E +S++ V + + L L+
Sbjct: 290 WESDGETEEPNHQEVEDSGDEDVASFATGCVKVQENAEFDSSDKEHTVGLHKKRPLLGLV 349
Query: 265 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 324
L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++ATPGRLWE I
Sbjct: 350 LTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRLWELI 409
Query: 325 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ H HL+ L ++ LVIDE DRM+E GHF EL +L + + +S + P+
Sbjct: 410 KEKHPHLSNLRQLRCLVIDEADRMVERGHFLELSQLL------------EVLNDSQYNPK 457
Query: 385 LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
RQTFVFSATLT L + + + Q K+ K ++ L + +
Sbjct: 458 ----------------RQTFVFSATLT--LVHQIPTRILQKKNAKKIDKKTKLEMLMEKV 499
Query: 445 NIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
IK PK++DLT K +TL E++I C +EKD YLYYF+LQ+PGRT+
Sbjct: 500 GIKGKPKVIDLTRKEATVETLMETRIHCDTNEKDYYLYYFLLQYPGRTMV---------- 549
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
I K L S +L T++ C+ +
Sbjct: 550 ------FANSIDCIKRL--SSLL--------------------TILNCDPL--------- 572
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
PL HA+M+Q+QRLKNL+RF ++ + +LL TDVAARGLDIP ++HVIHY VPR
Sbjct: 573 -------PL--HANMHQKQRLKNLERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVPR 623
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEI 653
TSE+Y+HRSGRTARA NEGL+++LI D++
Sbjct: 624 TSELYVHRSGRTARAANEGLSLLLIGPDDL 653
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 9/163 (5%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
L ++ D +PL+ M K +L F ES + L I ++ I P
Sbjct: 564 LTILNCDPLPLHANMHQKQRLK-NLERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVP 622
Query: 1238 DN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
++HRSGRTARA NEGL+L+LI D++ + K++ +LEK +LP FP++ ++ I
Sbjct: 623 RTSELYVHRSGRTARAANEGLSLLLIGPDDLINFRKIYKTLEKSEELPFFPVETKYMTAI 682
Query: 1295 KKRIDLAKSI---EYLESKIKKNRPDNWLEKAAKDMDIIIDDE 1334
K+R++LA+ I E+ + K++ D+WL++AA+ +++ +DD+
Sbjct: 683 KERVNLARQIEKAEFFNGRAKQH--DSWLQQAAEALEVDLDDD 723
Score = 74.7 bits (182), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++ATPG L
Sbjct: 347 GLVLTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRL 405
>gi|443706484|gb|ELU02510.1| hypothetical protein CAPTEDRAFT_152919 [Capitella teleta]
Length = 608
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/501 (47%), Positives = 319/501 (63%), Gaps = 23/501 (4%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M+ W+ +PE ++ AL ++ F PT IQ +P+A+ R+DIVGAA TGSGKTLAF IP
Sbjct: 1 MSAWMNLFVPEKVMLALGEQNFVQPTPIQIESLPAAIRDRRDIVGAAHTGSGKTLAFAIP 60
Query: 827 ILTGIVNKLENPTEEDENDS--------------GLEEEAEEVLEELEEESANTTEFVKK 872
IL GI+ KL+ E + N E E + EE +
Sbjct: 61 ILNGIM-KLKEAAENELNQQLDGEEENEDDEILDEEEPEESAESDGDEEVEEKAEAESSE 119
Query: 873 TRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 932
LYALIL PTRELAIQV+NHI A KYT + VVGGMS +KQ R+L + P I+VA
Sbjct: 120 ETKPLYALILTPTRELAIQVKNHIEAAAKYTGITCMAVVGGMSVQKQERLLRRGPEIVVA 179
Query: 933 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM-TETSQPRQ 991
TPGRLWE HL+++ KI +LV+DE DRM+E GHF EL+ IL + E + RQ
Sbjct: 180 TPGRLWELYSELSNHLSKMPKIRFLVLDEADRMVEKGHFEELEKILGTINSDAENEKRRQ 239
Query: 992 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI-KRLQDLLNI----KSPKIVDLTEK 1046
TFVFSATLT++ K L Q K KK+ + SI K+L+ L+ + PKI+DLTEK
Sbjct: 240 TFVFSATLTYTHKAPERLFM-QKKKKKLKVTELSIEKKLEVLMGQVGMRERPKIIDLTEK 298
Query: 1047 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 1106
+TLTE++I C E+D YLYY + Q+P RTLVFCNS ++RL + T+LKC PLP
Sbjct: 299 QRTAETLTEARINCSAKERDLYLYYLLQQYPQRTLVFCNSKDCIRRLISIFTLLKCCPLP 358
Query: 1107 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166
LHA M QRQRLKNLD+F+ +LLATDVAARGLDIPG+E V+HY VPRT+E Y+HRSG
Sbjct: 359 LHADMQQRQRLKNLDKFKGNPRGLLLATDVAARGLDIPGVEQVVHYQVPRTTESYVHRSG 418
Query: 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIE 1226
RTARA NEGL+++++ D++ Y K+ SL + DLP FP++ ++ +K R+ +A SI+
Sbjct: 419 RTARACNEGLSVMMVAPDDLQNYRKIVKSLNRDADLPIFPVESDFVASLKPRVSMAWSID 478
Query: 1227 YLESKIKKN-RPDNWLHRSGR 1246
E K+ K+ R +NW + +
Sbjct: 479 LEEHKVNKHKRENNWFEKQAK 499
Score = 339 bits (870), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 219/523 (41%), Positives = 284/523 (54%), Gaps = 104/523 (19%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M+ W+ +PE ++ AL ++ F PT IQ +P+A+ R+DIVGAA TGSGKTLAF IP
Sbjct: 1 MSAWMNLFVPEKVMLALGEQNFVQPTPIQIESLPAAIRDRRDIVGAAHTGSGKTLAFAIP 60
Query: 210 ILTGIVNKLENPTEEDENDS--------------GLEEEAEEVLEELEEESANTTEFVKK 255
IL GI+ KL+ E + N E E + EE +
Sbjct: 61 ILNGIM-KLKEAAENELNQQLDGEEENEDDEILDEEEPEESAESDGDEEVEEKAEAESSE 119
Query: 256 TRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 315
LYALIL PTRELAIQV+NHI A KYT + VVGGMS +KQ R+L + P I+VA
Sbjct: 120 ETKPLYALILTPTRELAIQVKNHIEAAAKYTGITCMAVVGGMSVQKQERLLRRGPEIVVA 179
Query: 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT 375
TPGRLWE HL+++ KI +LV+DE DRM+E GHF EL+ IL + ++ R
Sbjct: 180 TPGRLWELYSELSNHLSKMPKIRFLVLDEADRMVEKGHFEELEKILGTINSDAENEKR-- 237
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP 435
RQTFVFSATLT++ K L Q K KK+ +
Sbjct: 238 -------------------------RQTFVFSATLTYTHKAPERLFM-QKKKKKLKVTEL 271
Query: 436 SI-KRLQDLLN----IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
SI K+L+ L+ + PKI+DLTEK +TLTE++I C E+D YLYY + Q+P R
Sbjct: 272 SIEKKLEVLMGQVGMRERPKIIDLTEKQRTAETLTEARINCSAKERDLYLYYLLQQYPQR 331
Query: 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550
TL + C
Sbjct: 332 TL--------------------------------VFC----------------------- 336
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610
NS ++RL + T+LKC PLPLHA M QRQRLKNLD+F+ +LLATDVAARGLDI
Sbjct: 337 -NSKDCIRRLISIFTLLKCCPLPLHADMQQRQRLKNLDKFKGNPRGLLLATDVAARGLDI 395
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
PG+E V+HY VPRT+E Y+HRSGRTARA NEGL+V+++ D++
Sbjct: 396 PGVEQVVHYQVPRTTESYVHRSGRTARACNEGLSVMMVAPDDL 438
Score = 85.9 bits (211), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
++++HRSGRTARA NEGL+++++ D++ Y K+ SL + DLP FP++ ++ +K R
Sbjct: 411 ESYVHRSGRTARACNEGLSVMMVAPDDLQNYRKIVKSLNRDADLPIFPVESDFVASLKPR 470
Query: 1298 IDLAKSIEYLESKIKKN-RPDNWLEKAAKDM 1327
+ +A SI+ E K+ K+ R +NW EK AK+M
Sbjct: 471 VSMAWSIDLEEHKVNKHKRENNWFEKQAKEM 501
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELAIQV+NHI A KYT + VVGGMS +KQ R+L + P I+VATPG L
Sbjct: 126 ALILTPTRELAIQVKNHIEAAAKYTGITCMAVVGGMSVQKQERLLRRGPEIVVATPGRL 184
>gi|312381486|gb|EFR27227.1| hypothetical protein AND_06199 [Anopheles darlingi]
Length = 799
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/490 (45%), Positives = 313/490 (63%), Gaps = 33/490 (6%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V+ W++ + E I++A+ +KGFKTPT+IQ +P+A+ +D++GAAETGSGKTLAFG
Sbjct: 218 VEYIRWIELGVSEPIVKAIAEKGFKTPTEIQEKSLPAAIFGHRDLLGAAETGSGKTLAFG 277
Query: 825 IPILTGI--VNKLENPTEEDENDSGLEEEAEEVL----EELEEESANTTEFVKKTRNK-- 876
+P+L GI + +L P D D ++ L E+ E + F + K
Sbjct: 278 LPMLEGIRKLKQLNEPIIYDNEDESETVHSDHELTPPPEDYELSPEDQKVFAMGSSKKKQ 337
Query: 877 -------LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
LY LIL PTRELA+Q+ +H+ KYT + +A V KQ R+L KCP I
Sbjct: 338 PMDPTKPLYGLILTPTRELALQINDHLKSVTKYTDINIATVFA----VKQERMLRKCPEI 393
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV-TMTETSQ 988
++ATPGRLWE IQ G+ HL ++ I +LVIDETDRM+E GHF ELK +L+ + T E +
Sbjct: 394 VIATPGRLWELIQAGNQHLAKVMHIRFLVIDETDRMLERGHFEELKQLLELINTNEEAKK 453
Query: 989 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL---NIKSPKIVDLTE 1045
R+ ++FSATLT +LKK K+KKV K P +RL +L+ + +PKIVDLT+
Sbjct: 454 KRRNYIFSATLTMDHDLPEHLKKNPKKAKKVMKETPG-QRLNNLIQTIGMTNPKIVDLTK 512
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 1105
+ +TLTES+I+C+ KD YLYYF+ +HPGRTLVFCNSI V+RL L L C+PL
Sbjct: 513 EQATAQTLTESRIVCQTPHKDFYLYYFLERHPGRTLVFCNSIECVRRLVALFEYLNCNPL 572
Query: 1106 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
L SM QRQRLKNL+RF ++L+ATDVAARGLDIP ++HVIHY VP+T+E Y+HR
Sbjct: 573 SLFGSMQQRQRLKNLERFTSNPKALLIATDVAARGLDIPNVDHVIHYQVPKTTENYVHR- 631
Query: 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
+GLT++LI +E+ Y+K+ L + DLP +P + ++ IK+R+ LA+ I
Sbjct: 632 --------KGLTVLLIGPEEVKAYVKLNQDLGRTADLPLYPTSDRMMRQIKQRVQLARDI 683
Query: 1226 EYLESKIKKN 1235
E LE + +++
Sbjct: 684 ERLEMQQRRS 693
Score = 344 bits (883), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 208/531 (39%), Positives = 284/531 (53%), Gaps = 115/531 (21%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V+ W++ + E I++A+ +KGFKTPT+IQ +P+A+ +D++GAAETGSGKTLAFG
Sbjct: 218 VEYIRWIELGVSEPIVKAIAEKGFKTPTEIQEKSLPAAIFGHRDLLGAAETGSGKTLAFG 277
Query: 208 IPILTGI--VNKLENPTEEDENDSGLEEEAEEVL----EELEEESANTTEFVKKTRNK-- 259
+P+L GI + +L P D D ++ L E+ E + F + K
Sbjct: 278 LPMLEGIRKLKQLNEPIIYDNEDESETVHSDHELTPPPEDYELSPEDQKVFAMGSSKKKQ 337
Query: 260 -------LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
LY LIL PTRELA+Q+ +H+ KYT + +A V KQ R+L KCP I
Sbjct: 338 PMDPTKPLYGLILTPTRELALQINDHLKSVTKYTDINIATVFA----VKQERMLRKCPEI 393
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
++ATPGRLWE IQ G+ HL ++ I +LVIDETDRM+E GHF ELK +L+ + E
Sbjct: 394 VIATPGRLWELIQAGNQHLAKVMHIRFLVIDETDRMLERGHFEELKQLLELINTNE---- 449
Query: 373 RQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK 432
E + R+ ++FSATLT +LKK K+KKV K
Sbjct: 450 -----------------------EAKKKRRNYIFSATLTMDHDLPEHLKKNPKKAKKVMK 486
Query: 433 GDPSIKRLQDL---LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489
P +RL +L + + +PKIVDLT++ +TLTES+I+C+ KD YLYYF+ +HPG
Sbjct: 487 ETPG-QRLNNLIQTIGMTNPKIVDLTKEQATAQTLTESRIVCQTPHKDFYLYYFLERHPG 545
Query: 490 RTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 549
RTL + C
Sbjct: 546 RTL--------------------------------VFC---------------------- 551
Query: 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 609
NSI V+RL L L C+PL L SM QRQRLKNL+RF ++L+ATDVAARGLD
Sbjct: 552 --NSIECVRRLVALFEYLNCNPLSLFGSMQQRQRLKNLERFTSNPKALLIATDVAARGLD 609
Query: 610 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660
IP ++HVIHY VP+T+E Y+HR +GLTV+LI +E+ K N
Sbjct: 610 IPNVDHVIHYQVPKTTENYVHR---------KGLTVLLIGPEEVKAYVKLN 651
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL PTRELA+Q+ +H+ KYT + +A V KQ R+L KCP I++ATPG L
Sbjct: 347 GLILTPTRELALQINDHLKSVTKYTDINIATVFA----VKQERMLRKCPEIVIATPGRL 401
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 10/91 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HR +GLT++LI +E+ Y+K+ L + DLP +P + ++ IK+R
Sbjct: 626 ENYVHR---------KGLTVLLIGPEEVKAYVKLNQDLGRTADLPLYPTSDRMMRQIKQR 676
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDM 1327
+ LA+ IE LE + +++ + +W +K AK+
Sbjct: 677 VQLARDIERLEMQQRRSGEERSWEDKLAKEF 707
>gi|348553728|ref|XP_003462678.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Cavia porcellus]
Length = 841
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/559 (41%), Positives = 329/559 (58%), Gaps = 78/559 (13%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 185 DQKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLVPAIRDRLDILGAAETGSGKTL 244
Query: 822 AFGIPIL-----------------TGIVNKLENPTEEDENDSGL---EEEAEEVL----- 856
AF IP++ TG+ P+ E +SG+ E AE V+
Sbjct: 245 AFAIPMIHAVLQWQKRKTSPTAGHTGVSPGETGPSGEAGPESGVLPDEAGAEAVVLPARA 304
Query: 857 -------------------------------EELEEE-----SANTTEFVKKTRNK---- 876
E+ E+E T E K+ K
Sbjct: 305 NISAPVSDQALLCDDDAGEGPSSLIKEKSVPEQTEDEEKMLDGEQTGELKKELDGKTATC 364
Query: 877 -------LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
L L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I
Sbjct: 365 GTHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRHPEI 424
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
++ATPGRLWE ++ H HL+ L ++ LV+DE DRM+E GHF EL +L+ + ++ +
Sbjct: 425 VIATPGRLWELVKEKHSHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPK 484
Query: 990 RQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 1047
RQT VFSATLT H + L KK K K +K D +Q + PK++DLT
Sbjct: 485 RQTLVFSATLTLVHQVPARLLHKKHVKKIDKTAKLD---LLMQKIGMRGKPKVIDLTRNE 541
Query: 1048 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 1107
G +TLTE+KI C+ +EKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL L
Sbjct: 542 GTVETLTETKIHCETEEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTL 601
Query: 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
HA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGR
Sbjct: 602 HACMHQKQRLRNLEQFARLKDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGR 661
Query: 1168 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEY 1227
TARA +EGL+L+LI ++I + K++ +L+K D+P FP+ + ++K+RI LA+ IE
Sbjct: 662 TARATSEGLSLMLIGPEDIVNFKKIYKTLKKAEDIPLFPVQTKYMDVVKERIRLARQIEK 721
Query: 1228 LESK-IKKNRPDNWLHRSG 1245
E + + ++W+ ++
Sbjct: 722 AEYRNFQACLHNSWIEQAA 740
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 179/432 (41%), Positives = 247/432 (57%), Gaps = 92/432 (21%)
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
EDE E+ E+ +EL+ ++A K+ L L+L PTRELA+QV+ HI
Sbjct: 339 EDEEKMLDGEQTGELKKELDGKTATCGTHPKRP---LLGLVLTPTRELAVQVKQHIDAVA 395
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
K+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LV+D
Sbjct: 396 KFTGIKTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHSHLSNLRQLRCLVVD 455
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 456 EADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQT 487
Query: 404 FVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSATLT H + L KK +K++ K+ K+ L +KIG+
Sbjct: 488 LVFSATLTLVHQVPARLLHKK-------------HVKKID-----KTAKLDLLMQKIGMR 529
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT G +TLT
Sbjct: 530 G-----------------------------------------KPKVIDLTRNEGTVETLT 548
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ +EKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 549 ETKIHCETEEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 608
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA +E
Sbjct: 609 QRLRNLEQFARLKDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATSE 668
Query: 642 GLTVVLIESDEI 653
GL+++LI ++I
Sbjct: 669 GLSLMLIGPEDI 680
Score = 226 bits (575), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 151/422 (35%), Positives = 210/422 (49%), Gaps = 105/422 (24%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 185 DQKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLVPAIRDRLDILGAAETGSGKTL 244
Query: 205 AFGIPIL-----------------TGIVNKLENPTEEDENDSGL---EEEAEEVL----- 239
AF IP++ TG+ P+ E +SG+ E AE V+
Sbjct: 245 AFAIPMIHAVLQWQKRKTSPTAGHTGVSPGETGPSGEAGPESGVLPDEAGAEAVVLPARA 304
Query: 240 -------------------------------EELEEE-----SANTTEFVKKTRNK---- 259
E+ E+E T E K+ K
Sbjct: 305 NISAPVSDQALLCDDDAGEGPSSLIKEKSVPEQTEDEEKMLDGEQTGELKKELDGKTATC 364
Query: 260 -------LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
L L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I
Sbjct: 365 GTHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRHPEI 424
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
++ATPGRLWE ++ H HL+ L ++ LV+DE DRM+E GHF EL +L+ +
Sbjct: 425 VIATPGRLWELVKEKHSHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLN------- 477
Query: 373 RQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKV 430
+S + P+ RQT VFSATLT H + L KK K K
Sbjct: 478 -----DSQYNPK----------------RQTLVFSATLTLVHQVPARLLHKKHVKKIDKT 516
Query: 431 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
+K D +Q + PK++DLT G +TLTE+KI C+ +EKD YLYYF++Q+PGR
Sbjct: 517 AKLD---LLMQKIGMRGKPKVIDLTRNEGTVETLTETKIHCETEEKDFYLYYFLMQYPGR 573
Query: 491 TL 492
+L
Sbjct: 574 SL 575
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +EGL+L+LI ++I + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 655 YVHRSGRTARATSEGLSLMLIGPEDIVNFKKIYKTLKKAEDIPLFPVQTKYMDVVKERIR 714
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA +++ +D+E
Sbjct: 715 LARQIEKAEYRNFQACLHNSWIEQAAAALEVDLDEE 750
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 374 GLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 432
>gi|241253045|ref|XP_002403786.1| RNA helicase, putative [Ixodes scapularis]
gi|215496560|gb|EEC06200.1| RNA helicase, putative [Ixodes scapularis]
Length = 463
Score = 411 bits (1057), Expect = e-111, Method: Composition-based stats.
Identities = 226/480 (47%), Positives = 301/480 (62%), Gaps = 72/480 (15%)
Query: 756 DTSNNEDMFVQ------MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
D +N++ VQ M+ W+ +PE +++AL + F PT IQ+ +PSA+ D+
Sbjct: 43 DNPSNDETPVQEEDQKDMSAWLNCYVPEPVLKALAELNFTQPTPIQAQTLPSAIRDHMDV 102
Query: 810 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869
+GAAETGSGKTLAFGIPIL I E++A
Sbjct: 103 MGAAETGSGKTLAFGIPILHHIA----------------EQKAR---------------- 130
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
+ L AL+L PTRELAIQV+ H+ A KYT + V V+GG+S +KQLR+L + P I
Sbjct: 131 IGDGPMSLQALVLTPTRELAIQVKQHLQSAAKYTGIGVVNVIGGLSADKQLRLLKRRPEI 190
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-----DRVTMT 984
+VATPGRLWE + HL+++ + YLVIDE DRM+E GHF +L +L DRV
Sbjct: 191 VVATPGRLWELVDQNTPHLSDVSNVRYLVIDEADRMVEKGHFEDLTRLLALMNADRV--- 247
Query: 985 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 1044
+ ++ RQ FVFSATLT L + + PK+VDLT
Sbjct: 248 DGAKRRQNFVFSATLTMQLMRIIGVSA-------------------------KPKVVDLT 282
Query: 1045 EKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 1103
K+G ++L ES+I+C ++KDS LYYF+L HPGRTLVFCNSI SV+RL +L +L+CS
Sbjct: 283 RKLGTAESLRESRIVCSSIEDKDSRLYYFLLAHPGRTLVFCNSIDSVRRLVSVLDLLQCS 342
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
PLPLHA M QRQRLKNLDRFR +LLATDVAARGLDI GIEHVIH+ VPRT+E+Y+H
Sbjct: 343 PLPLHAQMQQRQRLKNLDRFRSSPTGLLLATDVAARGLDIEGIEHVIHFQVPRTAEVYVH 402
Query: 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
RSGRTARA ++GL+++L+E E+P+Y K+ +L ++ DLPDFP+D VL + R+ LA+
Sbjct: 403 RSGRTARAASDGLSVMLMEPRELPVYRKICRTLGREEDLPDFPVDSDVLKAVLDRVSLAR 462
Score = 218 bits (555), Expect = 2e-53, Method: Composition-based stats.
Identities = 108/180 (60%), Positives = 140/180 (77%), Gaps = 4/180 (2%)
Query: 491 TLCEEIQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTL 548
TL ++ ++ + + PK+VDLT K+G ++L ES+I+C ++KDS LYYF+L HPGRTL
Sbjct: 261 TLTMQLMRIIGVSAKPKVVDLTRKLGTAESLRESRIVCSSIEDKDSRLYYFLLAHPGRTL 320
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608
VFCNSI SV+RL +L +L+CSPLPLHA M QRQRLKNLDRFR +LLATDVAARGL
Sbjct: 321 VFCNSIDSVRRLVSVLDLLQCSPLPLHAQMQQRQRLKNLDRFRSSPTGLLLATDVAARGL 380
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF--NLQEEEN 666
DI GIEHVIH+ VPRT+E+Y+HRSGRTARA ++GL+V+L+E E+P+ K L EE+
Sbjct: 381 DIEGIEHVIHFQVPRTAEVYVHRSGRTARAASDGLSVMLMEPRELPVYRKICRTLGREED 440
Score = 216 bits (550), Expect = 9e-53, Method: Composition-based stats.
Identities = 142/383 (37%), Positives = 198/383 (51%), Gaps = 94/383 (24%)
Query: 139 DTSNNEDMFVQ------MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
D +N++ VQ M+ W+ +PE +++AL + F PT IQ+ +PSA+ D+
Sbjct: 43 DNPSNDETPVQEEDQKDMSAWLNCYVPEPVLKALAELNFTQPTPIQAQTLPSAIRDHMDV 102
Query: 193 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252
+GAAETGSGKTLAFGIPIL I E++A
Sbjct: 103 MGAAETGSGKTLAFGIPILHHIA----------------EQKAR---------------- 130
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
+ L AL+L PTRELAIQV+ H+ A KYT + V V+GG+S +KQLR+L + P I
Sbjct: 131 IGDGPMSLQALVLTPTRELAIQVKQHLQSAAKYTGIGVVNVIGGLSADKQLRLLKRRPEI 190
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
+VATPGRLWE + HL+++ + YLVIDE DRM+E GHF +L +L +
Sbjct: 191 VVATPGRLWELVDQNTPHLSDVSNVRYLVIDEADRMVEKGHFEDLTRLLALMNA------ 244
Query: 373 RQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK 432
DRV + ++ RQ FVFSATLT L + +
Sbjct: 245 -----------------DRV---DGAKRRQNFVFSATLTMQLMRIIGVS----------- 273
Query: 433 GDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRT 491
PK+VDLT K+G ++L ES+I+C ++KDS LYYF+L HPGRT
Sbjct: 274 --------------AKPKVVDLTRKLGTAESLRESRIVCSSIEDKDSRLYYFLLAHPGRT 319
Query: 492 L--CEEIQDLLNIKSPKIVDLTE 512
L C I + + S ++DL +
Sbjct: 320 LVFCNSIDSVRRLVS--VLDLLQ 340
Score = 74.3 bits (181), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S AL+L PTRELAIQV+ H+ A KYT + V V+GG+S +KQLR+L + P I+VATPG
Sbjct: 137 SLQALVLTPTRELAIQVKQHLQSAAKYTGIGVVNVIGGLSADKQLRLLKRRPEIVVATPG 196
Query: 1413 AL 1414
L
Sbjct: 197 RL 198
Score = 70.1 bits (170), Expect = 9e-09, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
L L++ +PL+ +M ++ +L F + L L IE +E I P
Sbjct: 336 LDLLQCSPLPLHAQM-QQRQRLKNLDRFRSSPTGLLLATDVAARGLDIEGIEHVIHFQVP 394
Query: 1238 ---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
+ ++HRSGRTARA ++GL+++L+E E+P+Y K+ +L ++ DLPDFP+D VL +
Sbjct: 395 RTAEVYVHRSGRTARAASDGLSVMLMEPRELPVYRKICRTLGREEDLPDFPVDSDVLKAV 454
Query: 1295 KKRIDLAK 1302
R+ LA+
Sbjct: 455 LDRVSLAR 462
>gi|27882644|gb|AAH43900.1| LOC398446 protein, partial [Xenopus laevis]
Length = 660
Score = 411 bits (1057), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/479 (46%), Positives = 315/479 (65%), Gaps = 45/479 (9%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
+S N D+ + W ++P+ +++AL GF PT IQ++ +PSA+ + DI+GAAETG
Sbjct: 191 SSKNADV----SAWKNLHVPKVVLKALSFLGFTCPTPIQALALPSAIRDKMDILGAAETG 246
Query: 817 SGKTLAFGIPILTGI-----------------------VNKLENPTEEDENDSGLEEEAE 853
SGKTLAF IP++ I VN + TE+ E D E+ E
Sbjct: 247 SGKTLAFAIPMIHSILEWQKHQESGAAEGETKEEPTSDVNNEIDATEKQEQDMSENEDVE 306
Query: 854 EVLEELEEESAN-TTEFVKKTRNK---------LYALILAPTRELAIQVQNHILDAGKYT 903
+V E+ ++ S N F + +K L L++ PTRELA+QV++HI K+T
Sbjct: 307 QV-EDNDDVSENFDINFNDMSSSKSGTWGKERPLLGLVVTPTRELAVQVKHHIDAVAKFT 365
Query: 904 PVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETD 963
+K A +VGGM+++KQ R+L + P I++ATPGRLWE I H HL L ++ LVIDE D
Sbjct: 366 GIKTAIIVGGMASQKQQRLLGRRPEIVIATPGRLWELIGERHPHLCNLRRLRCLVIDEAD 425
Query: 964 RMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSK 1021
RM+E GH+ EL +L+ ++ + RQTFVFSATLT H L KK + +KV K
Sbjct: 426 RMVEKGHYAELSQLLELLSEVHYNPKRQTFVFSATLTLIHQAPTRLLQKK---RFQKVDK 482
Query: 1022 GDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 1080
D + L + + +K+ PK++DLT K +TLTE++I C DEKD YLYYF+LQ+PGR+
Sbjct: 483 -DSKLVSLMEKIGMKAKPKVIDLTRKQATVETLTETRIHCATDEKDFYLYYFLLQYPGRS 541
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
+VF NSI +KRLT LLT+L+C+PLPLHA+M+Q+QRLKNL+RF ++ + +LL TDVAARG
Sbjct: 542 MVFANSIDCIKRLTSLLTILECNPLPLHANMHQKQRLKNLERFAERESCVLLTTDVAARG 601
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
LDIP ++HVIHY VPRTSE Y+HRSGRTARA+++GLTL+LI +++ + K+F +LEKK
Sbjct: 602 LDIPNVQHVIHYQVPRTSETYVHRSGRTARASSDGLTLLLIGPNDVINFKKIFRTLEKK 660
Score = 372 bits (954), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 221/549 (40%), Positives = 310/549 (56%), Gaps = 127/549 (23%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
+S N D+ + W ++P+ +++AL GF PT IQ++ +PSA+ + DI+GAAETG
Sbjct: 191 SSKNADV----SAWKNLHVPKVVLKALSFLGFTCPTPIQALALPSAIRDKMDILGAAETG 246
Query: 200 SGKTLAFGIPILTGI-----------------------VNKLENPTEEDENDSGLEEEAE 236
SGKTLAF IP++ I VN + TE+ E D E+ E
Sbjct: 247 SGKTLAFAIPMIHSILEWQKHQESGAAEGETKEEPTSDVNNEIDATEKQEQDMSENEDVE 306
Query: 237 EVLEELEEESAN-TTEFVKKTRNK---------LYALILAPTRELAIQVQNHILDAGKYT 286
+V E+ ++ S N F + +K L L++ PTRELA+QV++HI K+T
Sbjct: 307 QV-EDNDDVSENFDINFNDMSSSKSGTWGKERPLLGLVVTPTRELAVQVKHHIDAVAKFT 365
Query: 287 PVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETD 346
+K A +VGGM+++KQ R+L + P I++ATPGRLWE I H HL L ++ LVIDE D
Sbjct: 366 GIKTAIIVGGMASQKQQRLLGRRPEIVIATPGRLWELIGERHPHLCNLRRLRCLVIDEAD 425
Query: 347 RMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406
RM+E G H+ EL +L+ ++ + RQTFVF
Sbjct: 426 RMVEKG----------------------------HYAELSQLLELLSEVHYNPKRQTFVF 457
Query: 407 SATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 464
SATLT H Q+ ++ + K KR Q + K K+V L EKIG+
Sbjct: 458 SATLTLIH-----------QAPTRLLQK-----KRFQKV--DKDSKLVSLMEKIGMKA-- 497
Query: 465 TESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESK 524
PK++DLT K +TLTE++
Sbjct: 498 ---------------------------------------KPKVIDLTRKQATVETLTETR 518
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
I C DEKD YLYYF+LQ+PGR++VF NSI +KRLT LLT+L+C+PLPLHA+M+Q+QRL
Sbjct: 519 IHCATDEKDFYLYYFLLQYPGRSMVFANSIDCIKRLTSLLTILECNPLPLHANMHQKQRL 578
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
KNL+RF ++ + +LL TDVAARGLDIP ++HVIHY VPRTSE Y+HRSGRTARA+++GLT
Sbjct: 579 KNLERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVPRTSETYVHRSGRTARASSDGLT 638
Query: 645 VVLIESDEI 653
++LI +++
Sbjct: 639 LLLIGPNDV 647
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L++ PTRELA+QV++HI K+T +K A +VGGM+++KQ R+L + P I++ATPG L
Sbjct: 341 GLVVTPTRELAVQVKHHIDAVAKFTGIKTAIIVGGMASQKQQRLLGRRPEIVIATPGRL 399
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
L ++E + +PL+ M K +L F ES + L I ++ I P
Sbjct: 558 LTILECNPLPLHANMHQKQRLK-NLERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVP 616
Query: 1238 ---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1278
+ ++HRSGRTARA+++GLTL+LI +++ + K+F +LEKK
Sbjct: 617 RTSETYVHRSGRTARASSDGLTLLLIGPNDVINFKKIFRTLEKK 660
>gi|334310507|ref|XP_001370949.2| PREDICTED: ATP-dependent RNA helicase DDX24 [Monodelphis domestica]
Length = 814
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 235/537 (43%), Positives = 334/537 (62%), Gaps = 56/537 (10%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
T+ +D ++ W +PE +++AL GF PT IQ++ + A+ DI+GAAETG
Sbjct: 192 TTKLDDQKADVSAWKDLFVPEPVLQALSSMGFSAPTPIQALALAPAIRDNLDILGAAETG 251
Query: 817 SGKTLAFGIPILTGIV----------------------------------NKLENP---- 838
SGKTLAF IP++ ++ N++ NP
Sbjct: 252 SGKTLAFAIPMIHSVLRWQDEQKETHHGQAGLHSADGESLGDADDSSDDSNEILNPLPME 311
Query: 839 --TEEDENDS---GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
E DEN S +EE+ ++ E E E A + N L L+L PTRELA+QV+
Sbjct: 312 REEERDENPSHSPSDKEESGDIKLEFEYEKAAGH---RNRSNPLLGLVLTPTRELAVQVK 368
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
+HI K+T ++ A +VGGM+ +KQ R+L + P I++ATPGRLWE I+ H HL++L +
Sbjct: 369 HHIDAVAKFTGIRTALLVGGMAPQKQQRMLTRRPEIVIATPGRLWELIKEQHQHLSDLKQ 428
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKK 1011
+ LVIDE DRM+E GHF EL +L+ + ++ + RQTFVFSATLT H + KK
Sbjct: 429 LRCLVIDEADRMVEKGHFVELSQLLEMLNDSQYNPERQTFVFSATLTLVHQAPARVFQKK 488
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
K K K D +Q + PK++DLT K +TLTE+KI C +EKD YLYY
Sbjct: 489 NAKKIDKTGKLD---MLMQKIGMRGKPKVIDLTRKEATVETLTETKIHCDKEEKDFYLYY 545
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
F+LQ+ GRT+VF NSI +KRLT LL++L PLPLHA+M+Q+QRLKNL+RF +++N++L
Sbjct: 546 FLLQYLGRTMVFANSIDCIKRLTALLSILDRDPLPLHANMHQKQRLKNLERFAERDNAVL 605
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
L+TDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA EGL+L+LI D++ + K
Sbjct: 606 LSTDVAARGLDIPDVQHVIHYQVPRTSEIYVHRSGRTARAAKEGLSLLLIGPDDMINFKK 665
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLHRSG 1245
++ +LEK ++P FPI+ + IK+R++LA+ I EY S+ K++ + W ++
Sbjct: 666 IYKTLEKNEEIPLFPIEIKCMKAIKERVNLARQIEKEEYYNSRAKQH--NAWFQQAA 720
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 217/559 (38%), Positives = 303/559 (54%), Gaps = 135/559 (24%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
T+ +D ++ W +PE +++AL GF PT IQ++ + A+ DI+GAAETG
Sbjct: 192 TTKLDDQKADVSAWKDLFVPEPVLQALSSMGFSAPTPIQALALAPAIRDNLDILGAAETG 251
Query: 200 SGKTLAFGIPILTGIV----------------------------------NKLENP---- 221
SGKTLAF IP++ ++ N++ NP
Sbjct: 252 SGKTLAFAIPMIHSVLRWQDEQKETHHGQAGLHSADGESLGDADDSSDDSNEILNPLPME 311
Query: 222 --TEEDENDS---GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
E DEN S +EE+ ++ E E E A + N L L+L PTRELA+QV+
Sbjct: 312 REEERDENPSHSPSDKEESGDIKLEFEYEKAAGH---RNRSNPLLGLVLTPTRELAVQVK 368
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
+HI K+T ++ A +VGGM+ +KQ R+L + P I++ATPGRLWE I+ H HL++L +
Sbjct: 369 HHIDAVAKFTGIRTALLVGGMAPQKQQRMLTRRPEIVIATPGRLWELIKEQHQHLSDLKQ 428
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396
+ LVIDE DRM+E G HF EL +L+ + ++
Sbjct: 429 LRCLVIDEADRMVEKG----------------------------HFVELSQLLEMLNDSQ 460
Query: 397 TSQPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
+ RQTFVFSAT L H + KK +KK+ K + K+ L
Sbjct: 461 YNPERQTFVFSATLTLVHQAPARVFQKKN---AKKIDK---------------TGKLDML 502
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+KIG+ PK++DLT K
Sbjct: 503 MQKIGMRG-----------------------------------------KPKVIDLTRKE 521
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+TLTE+KI C +EKD YLYYF+LQ+ GRT+VF NSI +KRLT LL++L PLPL
Sbjct: 522 ATVETLTETKIHCDKEEKDFYLYYFLLQYLGRTMVFANSIDCIKRLTALLSILDRDPLPL 581
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
HA+M+Q+QRLKNL+RF +++N++LL+TDVAARGLDIP ++HVIHY VPRTSEIY+HRSGR
Sbjct: 582 HANMHQKQRLKNLERFAERDNAVLLSTDVAARGLDIPDVQHVIHYQVPRTSEIYVHRSGR 641
Query: 635 TARANNEGLTVVLIESDEI 653
TARA EGL+++LI D++
Sbjct: 642 TARAAKEGLSLLLIGPDDM 660
Score = 81.3 bits (199), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 69/101 (68%), Gaps = 5/101 (4%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA EGL+L+LI D++ + K++ +LEK ++P FPI+ + IK+R++
Sbjct: 635 YVHRSGRTARAAKEGLSLLLIGPDDMINFKKIYKTLEKNEEIPLFPIEIKCMKAIKERVN 694
Query: 1300 LAKSI---EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLI 1337
LA+ I EY S+ K++ + W ++AA ++I +DD+ I
Sbjct: 695 LARQIEKEEYYNSRAKQH--NAWFQQAADALEIDLDDDVFI 733
Score = 70.9 bits (172), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV++HI K+T ++ A +VGGM+ +KQ R+L + P I++ATPG L
Sbjct: 354 GLVLTPTRELAVQVKHHIDAVAKFTGIRTALLVGGMAPQKQQRMLTRRPEIVIATPGRL 412
>gi|391340745|ref|XP_003744697.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Metaseiulus
occidentalis]
Length = 757
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/485 (44%), Positives = 302/485 (62%), Gaps = 51/485 (10%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
EW F I I++AL Q + P++IQS + A+ R DI+GAAETGSGKTLAFGIP++
Sbjct: 250 EWEIFEIEPRILKALAQLRYTEPSEIQSQCLIPAIRDRLDILGAAETGSGKTLAFGIPLV 309
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
+L+E + RNKL ALIL PTREL
Sbjct: 310 ------------------------HRLLQE-------------RCRNKLGALILTPTREL 332
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q++ H++D K+T + V C+VGG+S EKQ R+L K P I+VATPGRL+E +Q
Sbjct: 333 AVQIKKHLMDITKFTNLHVVCIVGGLSHEKQTRLLAKRPEIIVATPGRLFELVQEDPQLQ 392
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT---HSLKN 1005
+L + LVIDE DRMI+ GHF E++ IL + + RQ VFSATLT H +
Sbjct: 393 EQLISVRCLVIDEADRMIQKGHFEEMQLILKFMNSNRIGK-RQNLVFSATLTMDPHLPER 451
Query: 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDE 1064
+ KK + + + +L+ +L + PKI+D T+KIG +TLTES+I C K ++
Sbjct: 452 VIERKKKKRTGR--------LDQLKAMLGMTKPKIIDTTKKIGTAETLTESRIYCEKPEQ 503
Query: 1065 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
KD+ LYYF+ HPGRTLVFCNSI V+RL +L L+ P+ LHA M QRQRLK+LDRF
Sbjct: 504 KDALLYYFLKMHPGRTLVFCNSIDCVRRLKSVLEALRMKPMGLHAEMQQRQRLKHLDRFA 563
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
NS+L+ATDVAARGLDI IEHVIH++V + SE YIHRSGRTAR+ GL+++L++
Sbjct: 564 ATPNSVLIATDVAARGLDIKNIEHVIHFNVSKASETYIHRSGRTARSKQSGLSVMLVDGR 623
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHR 1243
E+P Y K+ ++L++ +LP FP+ E++L + K R+ A+ +E L+ + KK + D W +
Sbjct: 624 ELPQYRKLLHALKRTDNLPPFPVQENILKICKARVAKARELETLQYRQKKVQKSDGWFAK 683
Query: 1244 SGRTA 1248
+ A
Sbjct: 684 CAKDA 688
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 190/359 (52%), Gaps = 80/359 (22%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
EW F I I++AL Q + P++IQS + A+ R DI+GAAETGSGKTLAFGIP++
Sbjct: 250 EWEIFEIEPRILKALAQLRYTEPSEIQSQCLIPAIRDRLDILGAAETGSGKTLAFGIPLV 309
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
+L+E + RNKL ALIL PTREL
Sbjct: 310 ------------------------HRLLQE-------------RCRNKLGALILTPTREL 332
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q++ H++D K+T + V C+VGG+S EKQ R+L K P I+VATPGRL+E +Q
Sbjct: 333 AVQIKKHLMDITKFTNLHVVCIVGGLSHEKQTRLLAKRPEIIVATPGRLFELVQEDPQLQ 392
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+L + LVIDE DRMI+ GHF E++ IL + +
Sbjct: 393 EQLISVRCLVIDEADRMIQKGHFEEMQLILKFMNSNRIGK-------------------- 432
Query: 392 VTMTETSQPRQTFVFSATLT---HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 448
RQ VFSATLT H + + KK + + + +L+ +L +
Sbjct: 433 ---------RQNLVFSATLTMDPHLPERVIERKKKKRTGR--------LDQLKAMLGMTK 475
Query: 449 PKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQHPGRTL--CEEIQDLLNIKS 504
PKI+D T+KIG +TLTES+I C K ++KD+ LYYF+ HPGRTL C I + +KS
Sbjct: 476 PKIIDTTKKIGTAETLTESRIYCEKPEQKDALLYYFLKMHPGRTLVFCNSIDCVRRLKS 534
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/162 (58%), Positives = 124/162 (76%), Gaps = 1/162 (0%)
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQHPGRTLVFCN 552
++++ +L + PKI+D T+KIG +TLTES+I C K ++KD+ LYYF+ HPGRTLVFCN
Sbjct: 465 DQLKAMLGMTKPKIIDTTKKIGTAETLTESRIYCEKPEQKDALLYYFLKMHPGRTLVFCN 524
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
SI V+RL +L L+ P+ LHA M QRQRLK+LDRF NS+L+ATDVAARGLDI
Sbjct: 525 SIDCVRRLKSVLEALRMKPMGLHAEMQQRQRLKHLDRFAATPNSVLIATDVAARGLDIKN 584
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
IEHVIH++V + SE YIHRSGRTAR+ GL+V+L++ E+P
Sbjct: 585 IEHVIHFNVSKASETYIHRSGRTARSKQSGLSVMLVDGRELP 626
Score = 87.8 bits (216), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+ ++HRSGRTAR+ GL+++L++ E+P Y K+ ++L++ +LP FP+ E++L + K R
Sbjct: 598 ETYIHRSGRTARSKQSGLSVMLVDGRELPQYRKLLHALKRTDNLPPFPVQENILKICKAR 657
Query: 1298 IDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDENLIQ 1338
+ A+ +E L+ + KK + D W K AKD DI + DENL++
Sbjct: 658 VAKARELETLQYRQKKVQKSDGWFAKCAKDADIEL-DENLLK 698
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 47/64 (73%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R ALIL PTRELA+Q++ H++D K+T + V C+VGG+S EKQ R+L K P I+VAT
Sbjct: 318 RNKLGALILTPTRELAVQIKKHLMDITKFTNLHVVCIVGGLSHEKQTRLLAKRPEIIVAT 377
Query: 1411 PGAL 1414
PG L
Sbjct: 378 PGRL 381
>gi|40018540|ref|NP_954550.1| ATP-dependent RNA helicase DDX24 [Rattus norvegicus]
gi|33638101|gb|AAQ24160.1| DEAD box polypeptide 24 [Rattus norvegicus]
gi|67677909|gb|AAH97262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Rattus norvegicus]
gi|149025406|gb|EDL81773.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Rattus norvegicus]
Length = 851
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 228/554 (41%), Positives = 320/554 (57%), Gaps = 86/554 (15%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
+D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKT
Sbjct: 185 QDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKT 244
Query: 821 LAF-----------------------GIPILTGIVNKLENP-----------------TE 840
LAF G+P G +P TE
Sbjct: 245 LAFAIPMIHSVLQWHKMKAPPIPSSAGVPPRLGAAAHRGSPCKDGAKSGVLPEEATIETE 304
Query: 841 EDENDSGL--------------------------------EEEAEEVLEELEEESANTTE 868
+DSG+ E+++++ E+L+EE A +
Sbjct: 305 AQPSDSGVQATAKAGASAASAQAGLFCDDDAGEGPSSLVEEKQSKDREEKLDEEQAGKLK 364
Query: 869 ---------FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ 919
+ R L L+L PTRELA+QV+ HI K+T + A +VGGMST+KQ
Sbjct: 365 QELCDQIAVYKVHPRRPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAILVGGMSTQKQ 424
Query: 920 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 979
R+LN+ P I++ATPGRLWE I+ H HL+ L ++ LVIDE DRM+E HF EL +L+
Sbjct: 425 QRMLNRHPEIVIATPGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDHFAELSQLLE 484
Query: 980 RVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037
+ ++ + RQT VFSATLT H + KK K K +K D +Q +
Sbjct: 485 MLNDSQYNPNRQTLVFSATLTLVHQAPARILHKKHVKKMDKTAKLD---LLMQKIGMRGK 541
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 1097
PK++DLT G +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL
Sbjct: 542 PKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLL 601
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 602 KVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 661
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217
SEIYIHRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+
Sbjct: 662 SEIYIHRSGRTARATSEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQSKYMDMVKE 721
Query: 1218 RIDLAKSIEYLESK 1231
RI LA+ IE E +
Sbjct: 722 RIRLARQIEKAEYR 735
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 215/593 (36%), Positives = 296/593 (49%), Gaps = 170/593 (28%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
+D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKT
Sbjct: 185 QDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKT 244
Query: 204 LAF-----------------------GIPILTGIVNKLENP-----------------TE 223
LAF G+P G +P TE
Sbjct: 245 LAFAIPMIHSVLQWHKMKAPPIPSSAGVPPRLGAAAHRGSPCKDGAKSGVLPEEATIETE 304
Query: 224 EDENDSGL--------------------------------EEEAEEVLEELEEESANTTE 251
+DSG+ E+++++ E+L+EE A +
Sbjct: 305 AQPSDSGVQATAKAGASAASAQAGLFCDDDAGEGPSSLVEEKQSKDREEKLDEEQAGKLK 364
Query: 252 ---------FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ 302
+ R L L+L PTRELA+QV+ HI K+T + A +VGGMST+KQ
Sbjct: 365 QELCDQIAVYKVHPRRPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAILVGGMSTQKQ 424
Query: 303 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 362
R+LN+ P I++ATPGRLWE I+ H HL+ L ++ LVIDE DRM+E H
Sbjct: 425 QRMLNRHPEIVIATPGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDH--------- 475
Query: 363 RVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT--LTHSLKNSLNL 420
F EL +L+ + ++ + RQT VFSAT L H +
Sbjct: 476 -------------------FAELSQLLEMLNDSQYNPNRQTLVFSATLTLVHQAPARILH 516
Query: 421 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480
KK V K D K+ K+ L +KIG+
Sbjct: 517 KK------HVKKMD------------KTAKLDLLMQKIGMRG------------------ 540
Query: 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540
PK++DLT G +TLTE+KI C+ DEKD YLYYF+
Sbjct: 541 -----------------------KPKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFL 577
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLA
Sbjct: 578 MQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLA 637
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
TDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EGL+++LI +++
Sbjct: 638 TDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARATSEGLSLMLIGPEDV 690
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 384 GLVLTPTRELAVQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 442
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 665 YIHRSGRTARATSEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQSKYMDMVKERIR 724
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 725 LARQIEKAEYRNFQACLHNSWIEQ 748
>gi|340374409|ref|XP_003385730.1| PREDICTED: hypothetical protein LOC100639442 [Amphimedon
queenslandica]
Length = 1012
Score = 395 bits (1014), Expect = e-106, Method: Compositional matrix adjust.
Identities = 224/517 (43%), Positives = 313/517 (60%), Gaps = 52/517 (10%)
Query: 734 KLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAE-WVKFNIPETIIRALYQK-GFKTP 791
+LK K +KQ K++++ S E V+ E W + +TI+R+L + GF TP
Sbjct: 530 RLKAKVAEKQH--KKRKKVVQSTVSIEEPKAVKGGEAWSSLGLHDTIVRSLVDRLGFSTP 587
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851
T+IQ +P A+ + DI+GAAETGSGKTLAFG+P+L
Sbjct: 588 TEIQQKAIPPAINGKHDIIGAAETGSGKTLAFGLPVLN---------------------- 625
Query: 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 911
++ R +L ALIL PTRELA+QV HI A YT +KV VV
Sbjct: 626 -----------------YILTNRQRLVALILMPTRELALQVVEHIKAAAYYTNIKVCAVV 668
Query: 912 GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 971
GGMS+EKQ R+L CP I+V TPGRLW+ ++ HL ++ +L+IDE DRMIE GHF
Sbjct: 669 GGMSSEKQDRLLKLCPEIVVGTPGRLWQMMKEECPHLNNFSQLRFLIIDEADRMIEQGHF 728
Query: 972 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 1031
EL IL+R++ S QT VFSATLT + K G+ + K+S G+ SI+ +
Sbjct: 729 RELTLILERLSSQVLSDKYQTMVFSATLTLPRR-----KIGRKRKSKMS-GEESIENVIL 782
Query: 1032 LLNIKSPKI-VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 1090
+ + +DLT K G + + ESKI+C DEKD YLYY +L + GR LVF NS+ +
Sbjct: 783 KAGLSETAVTIDLTHKHGTVERIEESKIICTTDEKDMYLYYALLMYTGRVLVFTNSLDCL 842
Query: 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 1150
RL LL +LK SPLPLHA M QRQR+KNL+R+ + N +LLA+DVAARGLD+P +EH+I
Sbjct: 843 NRLKSLLELLKFSPLPLHARMQQRQRIKNLERYSNDPNGLLLASDVAARGLDVPQVEHII 902
Query: 1151 HYHVPRTSEIYIHRSGRTARAN-NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE 1209
HY VP+++EIY+HRSGRTAR G +L+LI D++ Y + +L ++ DLP+FPI+
Sbjct: 903 HYQVPKSTEIYVHRSGRTARGRVASGSSLLLIGPDDLQSYKNICQTLNRENDLPNFPINL 962
Query: 1210 SVLSLIKKRIDLAKSIEYLESKIKKNR-PDNWLHRSG 1245
S+L +++R+ LAK I+ +I+K+ NWL ++
Sbjct: 963 SLLKPLRERLKLAKKIDVDHHRIRKDSYSQNWLKKTA 999
Score = 330 bits (846), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 206/540 (38%), Positives = 280/540 (51%), Gaps = 133/540 (24%)
Query: 117 KLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAE-WVKFNIPETIIRALYQK-GFKTP 174
+LK K +KQ K++++ S E V+ E W + +TI+R+L + GF TP
Sbjct: 530 RLKAKVAEKQH--KKRKKVVQSTVSIEEPKAVKGGEAWSSLGLHDTIVRSLVDRLGFSTP 587
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234
T+IQ +P A+ + DI+GAAETGSGKTLAFG+P+L
Sbjct: 588 TEIQQKAIPPAINGKHDIIGAAETGSGKTLAFGLPVLN---------------------- 625
Query: 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 294
++ R +L ALIL PTRELA+QV HI A YT +KV VV
Sbjct: 626 -----------------YILTNRQRLVALILMPTRELALQVVEHIKAAAYYTNIKVCAVV 668
Query: 295 GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 354
GGMS+EKQ R+L CP I+V TPGRLW+ ++ HL ++ +L+IDE DRMIE G
Sbjct: 669 GGMSSEKQDRLLKLCPEIVVGTPGRLWQMMKEECPHLNNFSQLRFLIIDEADRMIEQG-- 726
Query: 355 PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 414
HF EL IL+R++ S QT VFSATLT
Sbjct: 727 --------------------------HFRELTLILERLSSQVLSDKYQTMVFSATLTLPR 760
Query: 415 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 474
+ K G+ + K+S G+ SI E + + L+E+ +
Sbjct: 761 R-----KIGRKRKSKMS-GEESI------------------ENVILKAGLSETAV----- 791
Query: 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 534
+DLT K G + + ESKI+C DEKD
Sbjct: 792 --------------------------------TIDLTHKHGTVERIEESKIICTTDEKDM 819
Query: 535 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 594
YLYY +L + GR LVF NS+ + RL LL +LK SPLPLHA M QRQR+KNL+R+ +
Sbjct: 820 YLYYALLMYTGRVLVFTNSLDCLNRLKSLLELLKFSPLPLHARMQQRQRIKNLERYSNDP 879
Query: 595 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN-NEGLTVVLIESDEI 653
N +LLA+DVAARGLD+P +EH+IHY VP+++EIY+HRSGRTAR G +++LI D++
Sbjct: 880 NGLLLASDVAARGLDVPQVEHIIHYQVPKSTEIYVHRSGRTARGRVASGSSLLLIGPDDL 939
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA+QV HI A YT +KV VVGGMS+EKQ R+L CP I+V TPG L
Sbjct: 636 ALILMPTRELALQVVEHIKAAAYYTNIKVCAVVGGMSSEKQDRLLKLCPEIVVGTPGRL 694
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
Query: 1240 WLHRSGRTARAN-NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
++HRSGRTAR G +L+LI D++ Y + +L ++ DLP+FPI+ S+L +++R+
Sbjct: 913 YVHRSGRTARGRVASGSSLLLIGPDDLQSYKNICQTLNRENDLPNFPINLSLLKPLRERL 972
Query: 1299 DLAKSIEYLESKIKKNR-PDNWLEKAAKDMDIIIDDE 1334
LAK I+ +I+K+ NWL+K A+ MDII+D+E
Sbjct: 973 KLAKKIDVDHHRIRKDSYSQNWLKKTAEAMDIILDEE 1009
>gi|384498821|gb|EIE89312.1| hypothetical protein RO3G_14023 [Rhizopus delemar RA 99-880]
Length = 808
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/506 (39%), Positives = 302/506 (59%), Gaps = 62/506 (12%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
T ++ D V ++ W F + + I+ AL F +PT IQ +P AL R DIVG+AETG
Sbjct: 240 TIDDVDQSVDVSAWKDFELAQPIVNALKYHKFSSPTPIQEKTLPLALQGR-DIVGSAETG 298
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
SGKTLAFGIPI+ + T E E+ SGL
Sbjct: 299 SGKTLAFGIPIVQYLA------THEKEDLSGL---------------------------- 324
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
IL PTRELAIQV++HI + +T ++ +VGGMS +KQ R+L P I+VATPGR
Sbjct: 325 ----ILTPTRELAIQVKDHIANVALFTDIRCVAIVGGMSAQKQERLLKGKPDIIVATPGR 380
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT---MTETSQP---- 989
LWE ++ L +I +LV+DE DRM+E GHF EL NIL+ ++ T T P
Sbjct: 381 LWELFSGNQEYMDMLKRIKFLVLDEADRMLEKGHFEELTNILNTLSTKRQTTTDWPEEIG 440
Query: 990 -------------RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 1036
QTF+++ATL+ ++ ++ KK ++ ++ D + R++ +
Sbjct: 441 QGNRKILPQDLGVHQTFIYTATLSKDIRFNVKAKKRKATAQPTGTMDDLLSRIE--FADQ 498
Query: 1037 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 1096
P ++D+T + + L E+KI C +EKD Y+YYF+ ++PGRT++F NSI +++RL +
Sbjct: 499 EPALIDMTSENIVASRLLEAKIDCLQNEKDVYVYYFVTRYPGRTIIFVNSIDAIRRLVPV 558
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
+L L LHA M Q+QRLKNLDRF+ + ++L+A+DVAARGLDIP +EHVIHY +PR
Sbjct: 559 FKLLNVEVLGLHAQMQQKQRLKNLDRFKANDKAVLVASDVAARGLDIPSVEHVIHYQLPR 618
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1216
+ EIY+HRSGRTARAN +G++L+L +E +Y K+ +L K + P FP+D ++L +K
Sbjct: 619 SGEIYVHRSGRTARANRDGISLLLCGPEETKIYQKLCQTLRKNEEYPLFPVDLNILRSMK 678
Query: 1217 KRIDLAKSIEYLESK-IKKNRPDNWL 1241
+R++LA+ I+ + + K+ +NW+
Sbjct: 679 ERVELAREIDTIHHRESKQTHEENWM 704
Score = 338 bits (867), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 200/530 (37%), Positives = 284/530 (53%), Gaps = 106/530 (20%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
T ++ D V ++ W F + + I+ AL F +PT IQ +P AL R DIVG+AETG
Sbjct: 240 TIDDVDQSVDVSAWKDFELAQPIVNALKYHKFSSPTPIQEKTLPLALQGR-DIVGSAETG 298
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKTLAFGIPI+ + T E E+ SGL
Sbjct: 299 SGKTLAFGIPIVQYLA------THEKEDLSGL---------------------------- 324
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
IL PTRELAIQV++HI + +T ++ +VGGMS +KQ R+L P I+VATPGR
Sbjct: 325 ----ILTPTRELAIQVKDHIANVALFTDIRCVAIVGGMSAQKQERLLKGKPDIIVATPGR 380
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
LWE ++ L +I +LV+DE DRM+E GHF EL NIL+ + S RQT +
Sbjct: 381 LWELFSGNQEYMDMLKRIKFLVLDEADRMLEKGHFEELTNILNTL-----STKRQTTTD- 434
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
+PE +R + + QTF+++ATL+ ++ N+K + K+ G
Sbjct: 435 --WPEEIGQGNRKILPQDLGVHQTFIYTATLSKDIR--FNVKAKKRKATAQPTG-----T 485
Query: 440 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499
+ DLL S+I E D
Sbjct: 486 MDDLL----------------------SRI-------------------------EFAD- 497
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKR 559
+ P ++D+T + + L E+KI C +EKD Y+YYF+ ++PGRT++F NSI +++R
Sbjct: 498 ---QEPALIDMTSENIVASRLLEAKIDCLQNEKDVYVYYFVTRYPGRTIIFVNSIDAIRR 554
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L + +L L LHA M Q+QRLKNLDRF+ + ++L+A+DVAARGLDIP +EHVIHY
Sbjct: 555 LVPVFKLLNVEVLGLHAQMQQKQRLKNLDRFKANDKAVLVASDVAARGLDIPSVEHVIHY 614
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEE 669
+PR+ EIY+HRSGRTARAN +G++++L +E + K Q NEE
Sbjct: 615 QLPRSGEIYVHRSGRTARANRDGISLLLCGPEETKIYQKL-CQTLRKNEE 663
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARAN +G++L+L +E +Y K+ +L K + P FP+D ++L +K+R++
Sbjct: 623 YVHRSGRTARANRDGISLLLCGPEETKIYQKLCQTLRKNEEYPLFPVDLNILRSMKERVE 682
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
LA+ I+ + + K+ +NW+ AK+MD+ DE+++Q
Sbjct: 683 LAREIDTIHHRESKQTHEENWMRNLAKEMDVDF-DEDMMQ 721
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 6/79 (7%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
LIL PTRELAIQV++HI + +T ++ +VGGMS +KQ R+L P I+VATPG L
Sbjct: 323 GLILTPTRELAIQVKDHIANVALFTDIRCVAIVGGMSAQKQERLLKGKPDIIVATPGRLW 382
Query: 1415 -----SLKRIDLAKSIEYL 1428
+ + +D+ K I++L
Sbjct: 383 ELFSGNQEYMDMLKRIKFL 401
>gi|47230160|emb|CAG10574.1| unnamed protein product [Tetraodon nigroviridis]
Length = 781
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 220/520 (42%), Positives = 308/520 (59%), Gaps = 71/520 (13%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P +++AL GF +PT IQ++ +PSA+ DI+GAAETG K+
Sbjct: 213 DTTTDVSAWKGLFVPTPVLKALSSLGFGSPTPIQALTLPSAIRDHMDILGAAETGRHKSH 272
Query: 822 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
G S LE+ A + EL + + L L+
Sbjct: 273 IAG-------------------GKSDLEDTA---VAELNPAGSQSLP--------LLGLV 302
Query: 882 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
L PTRELA+QV++HI K+T +K A VVGGMS EKQ ++L + P I++ATPGRLW+ I
Sbjct: 303 LTPTRELAVQVKHHIDVISKFTDIKTAIVVGGMSQEKQRKMLKRSPEIVIATPGRLWDLI 362
Query: 942 QLGHFHLTELYK----------INY------------------------LVIDETDRMIE 967
+ H HL L + IN+ LVIDE DRM+E
Sbjct: 363 REKHPHLQNLRQVRSVLVLFLNINFRLSGYTPCFMIQTVIVIMLLFCRCLVIDEADRMVE 422
Query: 968 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 1027
GHF EL+ + + + T + RQ FVFSATLT +K +L + Q ++ ++
Sbjct: 423 RGHFAELEGLFEMLKTTYFNPLRQMFVFSATLT--MKRTLPTRLLQRRNLDQRS---RLE 477
Query: 1028 RLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 1086
L D + IK+ PKIVDLT K +TLTE++I C+ DEKD YLYYF+ Q+PGRT+VF NS
Sbjct: 478 ILIDKVGIKAKPKIVDLTRKEATVETLTETRIHCQKDEKDFYLYYFLTQYPGRTMVFANS 537
Query: 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 1146
I +KRL LL +L C PLPLHA+M+Q+QRLKNL+RF +++ +LL TDVAARGLD+P +
Sbjct: 538 IDCIKRLNCLLVILNCDPLPLHANMHQKQRLKNLERFAQRDSCVLLTTDVAARGLDLPDV 597
Query: 1147 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206
+HVIHYHVPRTSE Y+HRSGRTARA EGL+L+LI +++ + K+ +L K +LP FP
Sbjct: 598 QHVIHYHVPRTSETYVHRSGRTARATKEGLSLLLIGPEDMINFKKITKTLGKDEELPVFP 657
Query: 1207 IDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHRSG 1245
I+ + IK R++LA+ IE +E +K ++WL ++
Sbjct: 658 IETKCMEAIKDRVNLARQIEKIEFHNNRKKHHNSWLKQAA 697
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/165 (60%), Positives = 131/165 (79%), Gaps = 1/165 (0%)
Query: 490 RTLCEEIQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
R+ E + D + IK+ PKIVDLT K +TLTE++I C+ DEKD YLYYF+ Q+PGRT+
Sbjct: 473 RSRLEILIDKVGIKAKPKIVDLTRKEATVETLTETRIHCQKDEKDFYLYYFLTQYPGRTM 532
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608
VF NSI +KRL LL +L C PLPLHA+M+Q+QRLKNL+RF +++ +LL TDVAARGL
Sbjct: 533 VFANSIDCIKRLNCLLVILNCDPLPLHANMHQKQRLKNLERFAQRDSCVLLTTDVAARGL 592
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
D+P ++HVIHYHVPRTSE Y+HRSGRTARA EGL+++LI +++
Sbjct: 593 DLPDVQHVIHYHVPRTSETYVHRSGRTARATKEGLSLLLIGPEDM 637
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 191/383 (49%), Gaps = 98/383 (25%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P +++AL GF +PT IQ++ +PSA+ DI+GAAETG K+
Sbjct: 213 DTTTDVSAWKGLFVPTPVLKALSSLGFGSPTPIQALTLPSAIRDHMDILGAAETGRHKSH 272
Query: 205 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264
G S LE+ A + EL + + L L+
Sbjct: 273 IAG-------------------GKSDLEDTA---VAELNPAGSQSLP--------LLGLV 302
Query: 265 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 324
L PTRELA+QV++HI K+T +K A VVGGMS EKQ ++L + P I++ATPGRLW+ I
Sbjct: 303 LTPTRELAVQVKHHIDVISKFTDIKTAIVVGGMSQEKQRKMLKRSPEIVIATPGRLWDLI 362
Query: 325 QLGHFHLTELYK----------INY------------------------LVIDETDRMIE 350
+ H HL L + IN+ LVIDE DRM+E
Sbjct: 363 REKHPHLQNLRQVRSVLVLFLNINFRLSGYTPCFMIQTVIVIMLLFCRCLVIDEADRMVE 422
Query: 351 SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
GHF EL+ + + M+++ +F L RQ FVFSATL
Sbjct: 423 RGHFAELEGLFE-------------MLKTTYFNPL---------------RQMFVFSATL 454
Query: 411 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKI 469
T +K +L + Q ++ ++ L D + IK+ PKIVDLT K +TLTE++I
Sbjct: 455 T--MKRTLPTRLLQRRNLDQRS---RLEILIDKVGIKAKPKIVDLTRKEATVETLTETRI 509
Query: 470 LCKHDEKDSYLYYFILQHPGRTL 492
C+ DEKD YLYYF+ Q+PGRT+
Sbjct: 510 HCQKDEKDFYLYYFLTQYPGRTM 532
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI----KKRIDLAKSIEYLESKIK 1233
LV++ D +PL+ M K +L F +S + L + +DL + +
Sbjct: 548 LVILNCDPLPLHANMHQKQRLK-NLERFAQRDSCVLLTTDVAARGLDLPDVQHVIHYHVP 606
Query: 1234 KNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSL 1293
+ + ++HRSGRTARA EGL+L+LI +++ + K+ +L K +LP FPI+ +
Sbjct: 607 RTS-ETYVHRSGRTARATKEGLSLLLIGPEDMINFKKITKTLGKDEELPVFPIETKCMEA 665
Query: 1294 IKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAA 1324
IK R++LA+ IE +E +K ++WL++AA
Sbjct: 666 IKDRVNLARQIEKIEFHNNRKKHHNSWLKQAA 697
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV++HI K+T +K A VVGGMS EKQ ++L + P I++ATPG L
Sbjct: 300 GLVLTPTRELAVQVKHHIDVISKFTDIKTAIVVGGMSQEKQRKMLKRSPEIVIATPGRL 358
>gi|114654532|ref|XP_001151974.1| PREDICTED: ATP-dependent RNA helicase DDX24 isoform 6 [Pan
troglodytes]
gi|410227214|gb|JAA10826.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Pan troglodytes]
gi|410252476|gb|JAA14205.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Pan troglodytes]
gi|410299418|gb|JAA28309.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Pan troglodytes]
gi|410331293|gb|JAA34593.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Pan troglodytes]
Length = 859
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 207/468 (44%), Positives = 302/468 (64%), Gaps = 27/468 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ ++E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLVKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ ++ ++ + RQT VFSATLT H + KK K K
Sbjct: 472 EADRMVEKGHFAELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 531
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 532 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 588
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 589 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 648
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K
Sbjct: 649 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 708
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSG 1245
D+P FP+ + ++K+RI LA+ IE E + + ++W+ ++
Sbjct: 709 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 756
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 191/492 (38%), Positives = 269/492 (54%), Gaps = 110/492 (22%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E ++ ++E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLVKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ ++ ++ + RQT
Sbjct: 472 EADRMVEKG----------------------------HFAELSQLLEMLSDSQYNPKRQT 503
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 504 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 545
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 546 G-----------------------------------------KPKVIDLTRNEATVETLT 564
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 565 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 624
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NE
Sbjct: 625 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE 684
Query: 642 GLTVVLIESDEI 653
GL+++LI +++
Sbjct: 685 GLSLMLIGPEDV 696
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 390 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 448
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 671 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 730
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 731 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 766
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLVPAIRDKLDILGAAETGSGKTL 245
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLVPAIRDKLDILGAAETGSGKTL 245
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
>gi|194386302|dbj|BAG59715.1| unnamed protein product [Homo sapiens]
Length = 763
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 209/468 (44%), Positives = 300/468 (64%), Gaps = 27/468 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 259 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 311
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 312 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 368
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 369 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 428
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 429 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 488
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 489 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 545
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 546 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 605
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K
Sbjct: 606 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 665
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN-WLHRSG 1245
D+P FP+ + ++K+RI LA+ IE E + + P N W+ ++
Sbjct: 666 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACPHNSWIEQAA 713
Score = 318 bits (816), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 191/492 (38%), Positives = 267/492 (54%), Gaps = 110/492 (22%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 259 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 311
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 312 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 368
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 369 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 428
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 429 EADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQT 460
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 461 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 502
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 503 G-----------------------------------------KPKVIDLTRNEATVETLT 521
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 522 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 581
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NE
Sbjct: 582 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE 641
Query: 642 GLTVVLIESDEI 653
GL+++LI +++
Sbjct: 642 GLSLMLIGPEDV 653
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 628 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 687
Query: 1300 LAKSIEYLESKIKKNRPDN-WLEKAAKDMDIIIDDE 1334
LA+ IE E + + P N W+E+AA ++I ++++
Sbjct: 688 LARQIEKSEYRNFQACPHNSWIEQAAAALEIELEED 723
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 347 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 405
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 143 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 202
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 203 AFAIPMIHAVLQ 214
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 143 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 202
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 203 AFAIPMIHAVLQ 214
>gi|343962287|dbj|BAK62731.1| ATP-dependent RNA helicase DDX24 [Pan troglodytes]
Length = 859
Score = 385 bits (989), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/468 (44%), Positives = 302/468 (64%), Gaps = 27/468 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ ++E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLVKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ ++ ++ + RQT VFSATLT H + KK K K
Sbjct: 472 EADRMVEKGHFAELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 531
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 532 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 588
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 589 RSLVFANSISCIKRLSGLLKVLDIMPLILHACMHQKQRLRNLEQFARLEDCVLLATDVAA 648
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K
Sbjct: 649 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 708
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSG 1245
D+P FP+ + ++K+RI LA+ IE E + + ++W+ ++
Sbjct: 709 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 756
Score = 321 bits (823), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 191/492 (38%), Positives = 269/492 (54%), Gaps = 110/492 (22%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E ++ ++E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLVKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ ++ ++ + RQT
Sbjct: 472 EADRMVEKG----------------------------HFAELSQLLEMLSDSQYNPKRQT 503
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 504 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 545
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 546 G-----------------------------------------KPKVIDLTRNEATVETLT 564
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 565 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLILHACMHQK 624
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NE
Sbjct: 625 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE 684
Query: 642 GLTVVLIESDEI 653
GL+++LI +++
Sbjct: 685 GLSLMLIGPEDV 696
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 390 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 448
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 671 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 730
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 731 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 766
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLVPAIRDKLDILGAAETGSGKTL 245
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLVPAIRDKLDILGAAETGSGKTL 245
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
>gi|397525830|ref|XP_003832856.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Pan paniscus]
Length = 859
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/468 (44%), Positives = 300/468 (64%), Gaps = 27/468 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E E ++ ++E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ESEEENLVKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 472 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 531
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 532 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 588
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 589 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 648
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K
Sbjct: 649 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 708
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSG 1245
D+P FP+ + ++K+RI LA+ IE E + + ++W+ ++
Sbjct: 709 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 756
Score = 320 bits (820), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 191/492 (38%), Positives = 267/492 (54%), Gaps = 110/492 (22%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E E ++ ++E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ESEEENLVKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 472 EADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQT 503
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 504 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 545
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 546 G-----------------------------------------KPKVIDLTRNEATVETLT 564
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 565 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 624
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NE
Sbjct: 625 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE 684
Query: 642 GLTVVLIESDEI 653
GL+++LI +++
Sbjct: 685 GLSLMLIGPEDV 696
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 671 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 730
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 731 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 766
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 390 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 448
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLVPAIRDKLDILGAAETGSGKTL 245
Query: 205 AFGIPIL 211
AF IP++
Sbjct: 246 AFAIPMI 252
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLVPAIRDKLDILGAAETGSGKTL 245
Query: 822 AFGIPIL 828
AF IP++
Sbjct: 246 AFAIPMI 252
>gi|66911843|gb|AAH96826.1| DDX24 protein [Homo sapiens]
Length = 804
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/468 (44%), Positives = 300/468 (64%), Gaps = 27/468 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 247 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 299
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 300 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 356
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 357 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 416
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 417 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 476
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 477 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 533
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 534 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 593
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K
Sbjct: 594 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 653
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSG 1245
D+P FP+ + ++K+RI LA+ IE E + + ++W+ ++
Sbjct: 654 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 701
Score = 318 bits (816), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 191/492 (38%), Positives = 267/492 (54%), Gaps = 110/492 (22%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 247 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 299
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 300 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 356
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 357 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 416
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 417 EADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQT 448
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 449 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 490
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 491 G-----------------------------------------KPKVIDLTRNEATVETLT 509
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 510 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 569
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NE
Sbjct: 570 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE 629
Query: 642 GLTVVLIESDEI 653
GL+++LI +++
Sbjct: 630 GLSLMLIGPEDV 641
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 616 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 675
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 676 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 711
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 335 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 393
Score = 43.9 bits (102), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 184 SALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+A+ + DI+GAAETGSGKTLAF IP++ ++
Sbjct: 170 AAIRDKLDILGAAETGSGKTLAFAIPMIHAVLQ 202
Score = 43.9 bits (102), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 801 SALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+A+ + DI+GAAETGSGKTLAF IP++ ++
Sbjct: 170 AAIRDKLDILGAAETGSGKTLAFAIPMIHAVLQ 202
>gi|119601958|gb|EAW81552.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, isoform CRA_c [Homo
sapiens]
Length = 840
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/468 (44%), Positives = 300/468 (64%), Gaps = 27/468 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 472 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 531
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 532 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 588
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 589 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 648
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K
Sbjct: 649 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 708
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSG 1245
D+P FP+ + ++K+RI LA+ IE E + + ++W+ ++
Sbjct: 709 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 756
Score = 318 bits (816), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 191/492 (38%), Positives = 267/492 (54%), Gaps = 110/492 (22%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 472 EADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQT 503
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 504 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 545
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 546 G-----------------------------------------KPKVIDLTRNEATVETLT 564
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 565 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 624
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NE
Sbjct: 625 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE 684
Query: 642 GLTVVLIESDEI 653
GL+++LI +++
Sbjct: 685 GLSLMLIGPEDV 696
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 671 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 730
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 731 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 766
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 390 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 448
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 245
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 245
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
>gi|9966805|ref|NP_065147.1| ATP-dependent RNA helicase DDX24 [Homo sapiens]
gi|18202929|sp|Q9GZR7.1|DDX24_HUMAN RecName: Full=ATP-dependent RNA helicase DDX24; AltName: Full=DEAD
box protein 24
gi|9931361|gb|AAG02169.1|AF214731_1 ATP-dependent RNA helicase [Homo sapiens]
gi|10437623|dbj|BAB15079.1| unnamed protein product [Homo sapiens]
gi|12053271|emb|CAB66820.1| hypothetical protein [Homo sapiens]
gi|14250756|gb|AAH08847.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens]
gi|14424802|gb|AAH09406.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens]
gi|117645896|emb|CAL38415.1| hypothetical protein [synthetic construct]
gi|119601957|gb|EAW81551.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, isoform CRA_b [Homo
sapiens]
gi|123993695|gb|ABM84449.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [synthetic construct]
gi|124000001|gb|ABM87509.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [synthetic construct]
gi|208967745|dbj|BAG72518.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [synthetic construct]
Length = 859
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/453 (45%), Positives = 293/453 (64%), Gaps = 26/453 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 472 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 531
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 532 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 588
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 589 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 648
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K
Sbjct: 649 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 708
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 709 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYR 741
Score = 318 bits (816), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 191/492 (38%), Positives = 267/492 (54%), Gaps = 110/492 (22%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 472 EADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQT 503
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 504 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 545
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 546 G-----------------------------------------KPKVIDLTRNEATVETLT 564
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 565 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 624
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NE
Sbjct: 625 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE 684
Query: 642 GLTVVLIESDEI 653
GL+++LI +++
Sbjct: 685 GLSLMLIGPEDV 696
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 671 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 730
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 731 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 766
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 390 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 448
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 245
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 245
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
>gi|426377845|ref|XP_004055664.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Gorilla gorilla gorilla]
Length = 859
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/453 (45%), Positives = 293/453 (64%), Gaps = 26/453 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEATAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 472 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 531
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 532 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 588
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 589 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 648
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K
Sbjct: 649 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 708
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 709 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYR 741
Score = 318 bits (815), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 191/492 (38%), Positives = 267/492 (54%), Gaps = 110/492 (22%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEATAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 472 EADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQT 503
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 504 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 545
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 546 G-----------------------------------------KPKVIDLTRNEATVETLT 564
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 565 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 624
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NE
Sbjct: 625 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE 684
Query: 642 GLTVVLIESDEI 653
GL+++LI +++
Sbjct: 685 GLSLMLIGPEDV 696
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 671 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 730
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 731 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 766
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 390 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 448
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 245
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 245
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
>gi|390352859|ref|XP_784112.3| PREDICTED: ATP-dependent RNA helicase DDX24-like [Strongylocentrotus
purpuratus]
Length = 934
Score = 382 bits (980), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/373 (51%), Positives = 256/373 (68%), Gaps = 6/373 (1%)
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
KL+ L+L PTRELA+QV+NH++ A K T +KVA VVGGMS EKQ R+L K P I+V TPG
Sbjct: 457 KLFGLVLTPTRELAVQVKNHLVAAAKKTNIKVAVVVGGMSAEKQKRVLKKRPDIIVGTPG 516
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RLWE QLG HL L + L+IDE DRM+E GH+ EL ILD + +E RQTFVF
Sbjct: 517 RLWELYQLGEPHLASLPDVKCLIIDEADRMVEKGHYAELSEILDILNTSEQRSSRQTFVF 576
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK-SPKIVDLTEKIGITKTLT 1054
SATL SL + L+K K+ K K D + + + IK ++VDLT++ G +L
Sbjct: 577 SATL--SLIHLGPLRKSLKKAYKQDKKD-KLDSVMAKIGIKEDAEVVDLTKREGTASSLL 633
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
ESKI+C +EKD YL+YF+ Q+PGRTLVF NSI ++RL +LT+L C PLPLH+SM+Q+
Sbjct: 634 ESKIVCAVEEKDIYLFYFLRQYPGRTLVFTNSIDCIRRLASILTLLDCKPLPLHSSMHQK 693
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QRLKNL+RF +LLATDVAARGLDIP IEHVIHY VPRTSE Y+HRSGRTAR
Sbjct: 694 QRLKNLERFTGNPKGLLLATDVAARGLDIPDIEHVIHYQVPRTSESYVHRSGRTARQAKV 753
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLES-KIK 1233
GL++ L+ +E+ Y ++ +L ++ ++P FP++ S + +R++LA+ I+ LE K
Sbjct: 754 GLSVTLVSPNEMNFYRRLCKTLNRE-EIPSFPVEHSYYQAVNERVELARDIDKLEHVSNK 812
Query: 1234 KNRPDNWLHRSGR 1246
K ++W R+ +
Sbjct: 813 KKHQNDWFVRAAK 825
Score = 325 bits (832), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 181/395 (45%), Positives = 225/395 (56%), Gaps = 86/395 (21%)
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
KL+ L+L PTRELA+QV+NH++ A K T +KVA VVGGMS EKQ R+L K P I+V TPG
Sbjct: 457 KLFGLVLTPTRELAVQVKNHLVAAAKKTNIKVAVVVGGMSAEKQKRVLKKRPDIIVGTPG 516
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RLWE QLG HL L + L+IDE DRM+E G
Sbjct: 517 RLWELYQLGEPHLASLPDVKCLIIDEADRMVEKG-------------------------- 550
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
H+ EL ILD + +E RQTFVFSATL SL + L+K K+ K K D
Sbjct: 551 --HYAELSEILDILNTSEQRSSRQTFVFSATL--SLIHLGPLRKSLKKAYKQDKKD---- 602
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
K+ + KIGI K D
Sbjct: 603 -----------KLDSVMAKIGI-----------KED------------------------ 616
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
++VDLT++ G +L ESKI+C +EKD YL+YF+ Q+PGRTLVF NSI ++
Sbjct: 617 ------AEVVDLTKREGTASSLLESKIVCAVEEKDIYLFYFLRQYPGRTLVFTNSIDCIR 670
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
RL +LT+L C PLPLH+SM+Q+QRLKNL+RF +LLATDVAARGLDIP IEHVIH
Sbjct: 671 RLASILTLLDCKPLPLHSSMHQKQRLKNLERFTGNPKGLLLATDVAARGLDIPDIEHVIH 730
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
Y VPRTSE Y+HRSGRTAR GL+V L+ +E+
Sbjct: 731 YQVPRTSESYVHRSGRTARQAKVGLSVTLVSPNEM 765
Score = 84.0 bits (206), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 12/102 (11%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V M+ W +IP + +L GF +PT IQ+ +P+A+ KDIVGAAETGSGKTLAFG
Sbjct: 245 VSMSTWDTLSIPTVVHESLQTMGFASPTPIQAGCIPAAINEGKDIVGAAETGSGKTLAFG 304
Query: 208 IPIL-------TGIVNKL-----ENPTEEDENDSGLEEEAEE 237
IP++ +V+ L +PTE++ GLE EA++
Sbjct: 305 IPLIYRILQHEAALVSGLTSVATADPTEDESGQDGLEGEAKD 346
Score = 84.0 bits (206), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 12/102 (11%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V M+ W +IP + +L GF +PT IQ+ +P+A+ KDIVGAAETGSGKTLAFG
Sbjct: 245 VSMSTWDTLSIPTVVHESLQTMGFASPTPIQAGCIPAAINEGKDIVGAAETGSGKTLAFG 304
Query: 825 IPIL-------TGIVNKL-----ENPTEEDENDSGLEEEAEE 854
IP++ +V+ L +PTE++ GLE EA++
Sbjct: 305 IPLIYRILQHEAALVSGLTSVATADPTEDESGQDGLEGEAKD 346
Score = 80.9 bits (198), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+NH++ A K T +KVA VVGGMS EKQ R+L K P I+V TPG L
Sbjct: 460 GLVLTPTRELAVQVKNHLVAAAKKTNIKVAVVVGGMSAEKQKRVLKKRPDIIVGTPGRL 518
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
++++HRSGRTAR GL++ L+ +E+ Y ++ +L ++ ++P FP++ S + +R
Sbjct: 738 ESYVHRSGRTARQAKVGLSVTLVSPNEMNFYRRLCKTLNRE-EIPSFPVEHSYYQAVNER 796
Query: 1298 IDLAKSIEYLES-KIKKNRPDNWLEKAAKDMDIIIDD 1333
++LA+ I+ LE KK ++W +AAK++D+ +D+
Sbjct: 797 VELARDIDKLEHVSNKKKHQNDWFVRAAKELDVDVDE 833
>gi|194383912|dbj|BAG59314.1| unnamed protein product [Homo sapiens]
Length = 766
Score = 382 bits (980), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/468 (44%), Positives = 299/468 (63%), Gaps = 27/468 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 209 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 261
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 262 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 318
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 319 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 378
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 379 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 438
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 439 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 495
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 496 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 555
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL L+LI +++ + K++ +L+K
Sbjct: 556 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLGLMLIGPEDVINFKKIYKTLKK 615
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSG 1245
D+P FP+ + ++K+RI LA+ IE E + + ++W+ ++
Sbjct: 616 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 663
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 191/492 (38%), Positives = 266/492 (54%), Gaps = 110/492 (22%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 209 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 261
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 262 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 318
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 319 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 378
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 379 EADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQT 410
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 411 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 452
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 453 G-----------------------------------------KPKVIDLTRNEATVETLT 471
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 472 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 531
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NE
Sbjct: 532 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE 591
Query: 642 GLTVVLIESDEI 653
GL ++LI +++
Sbjct: 592 GLGLMLIGPEDV 603
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 297 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 355
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 578 YVHRSGRTARATNEGLGLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 637
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 638 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 673
Score = 45.8 bits (107), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 30/40 (75%)
Query: 177 IQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
++++ + A+ + DI+GAAETGSGKTLAF IP++ ++
Sbjct: 125 LEALTLAPAIRDKLDILGAAETGSGKTLAFAIPMIHAVLQ 164
Score = 45.8 bits (107), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 30/40 (75%)
Query: 794 IQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
++++ + A+ + DI+GAAETGSGKTLAF IP++ ++
Sbjct: 125 LEALTLAPAIRDKLDILGAAETGSGKTLAFAIPMIHAVLQ 164
>gi|395827747|ref|XP_003787057.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Otolemur garnettii]
Length = 861
Score = 381 bits (979), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/400 (49%), Positives = 275/400 (68%), Gaps = 9/400 (2%)
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK-TRNKLYALILAPTRELAIQVQN 894
ENP E +N+ E+ +E E+L++ES K ++ L L+L PTRELA+QV+
Sbjct: 350 ENPVPE-QNEDEEEKLDKEHTEKLKQESDGKNAIYKAYPKHPLLGLVLTPTRELAVQVRQ 408
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
HI K+T +K A +VGGMST+KQ R+L +CP I++ATPGRLWE ++ H HL+ L ++
Sbjct: 409 HIDAVAKFTGIKTAILVGGMSTQKQQRMLKRCPEIVIATPGRLWELVKEKHPHLSNLRQL 468
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKG 1012
LVIDE DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + + KK
Sbjct: 469 RCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLIHQVPARILHKKH 528
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
K K +K D L + ++S PK++DLT K +TLTE+KI C+ DEKD YLYY
Sbjct: 529 TKKMDKTAKLD----LLMQKIGMRSKPKVIDLTRKEATVETLTETKIHCETDEKDFYLYY 584
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
F++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +L
Sbjct: 585 FLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVL 644
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
LATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K
Sbjct: 645 LATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKK 704
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ +L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 705 IYKTLKKDEDIPLFPVQAKYMDAVKERIRLARQIEKAEYR 744
Score = 317 bits (811), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 182/438 (41%), Positives = 248/438 (56%), Gaps = 91/438 (20%)
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK-TRNKLYALILAPTRELAIQVQN 277
ENP E +N+ E+ +E E+L++ES K ++ L L+L PTRELA+QV+
Sbjct: 350 ENPVPE-QNEDEEEKLDKEHTEKLKQESDGKNAIYKAYPKHPLLGLVLTPTRELAVQVRQ 408
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
HI K+T +K A +VGGMST+KQ R+L +CP I++ATPGRLWE ++ H HL+ L ++
Sbjct: 409 HIDAVAKFTGIKTAILVGGMSTQKQQRMLKRCPEIVIATPGRLWELVKEKHPHLSNLRQL 468
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
LVIDE DRM+E G HF EL +L+ + ++
Sbjct: 469 RCLVIDEADRMVEKG----------------------------HFAELSQLLEMLNDSQY 500
Query: 398 SQPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
+ RQT VFSAT L H + + KK K K + K+ L
Sbjct: 501 NPKRQTLVFSATLTLIHQVPARILHKKHTKKMDKTA------------------KLDLLM 542
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
+KIG+ PK++DLT K
Sbjct: 543 QKIGMRS-----------------------------------------KPKVIDLTRKEA 561
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LH
Sbjct: 562 TVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLH 621
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
A M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRT
Sbjct: 622 ACMHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRT 681
Query: 636 ARANNEGLTVVLIESDEI 653
ARA NEGL+++LI +++
Sbjct: 682 ARATNEGLSLMLIGPEDV 699
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+L +CP I++ATPG L
Sbjct: 393 GLVLTPTRELAVQVRQHIDAVAKFTGIKTAILVGGMSTQKQQRMLKRCPEIVIATPGRL 451
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 243
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 244 AFAIPVIHAVLQ 255
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 243
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 244 AFAIPVIHAVLQ 255
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 674 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQAKYMDAVKERIR 733
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 734 LARQIEKAEYRNFQACLHNSWIEQ 757
>gi|402877046|ref|XP_003902254.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Papio anubis]
Length = 856
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/449 (46%), Positives = 293/449 (65%), Gaps = 18/449 (4%)
Query: 792 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 845
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 300 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 356
Query: 846 SGLEEEAEEVL-EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 904
L++E L +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 357 ENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 413
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+K A +VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 414 IKTAILVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 473
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG 1022
M+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K +K
Sbjct: 474 MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKL 533
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082
D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LV
Sbjct: 534 D---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLV 590
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLD
Sbjct: 591 FANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLD 650
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
IP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+
Sbjct: 651 IPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDI 710
Query: 1203 PDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
P FP+ + ++K+RI LA+ IE E +
Sbjct: 711 PLFPVQTKYMDVVKERIRLARQIEKSEYR 739
Score = 317 bits (812), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 192/488 (39%), Positives = 267/488 (54%), Gaps = 102/488 (20%)
Query: 175 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 228
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 300 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 356
Query: 229 SGLEEEAEEVL-EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 287
L++E L +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 357 ENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 413
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+K A +VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 414 IKTAILVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 473
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
M+E G HF EL +L+ + ++ + RQT VFS
Sbjct: 474 MVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQTLVFS 505
Query: 408 AT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
AT L H + KK K K + K+ L +KIG+
Sbjct: 506 ATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMRG--- 544
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI 525
PK++DLT +TLTE+KI
Sbjct: 545 --------------------------------------KPKVIDLTRNEATVETLTETKI 566
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+
Sbjct: 567 HCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLR 626
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL++
Sbjct: 627 NLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSL 686
Query: 646 VLIESDEI 653
+LI +++
Sbjct: 687 MLIGPEDV 694
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 669 YVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 728
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 729 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 764
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+L++ P I+VATPG L
Sbjct: 388 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLSRRPEIVVATPGRL 446
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTL 243
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 244 AFAIPVIHAVLQ 255
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTL 243
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 244 AFAIPVIHAVLQ 255
>gi|149642575|ref|NP_001092515.1| ATP-dependent RNA helicase DDX24 [Bos taurus]
gi|148878167|gb|AAI46185.1| DDX24 protein [Bos taurus]
gi|296475209|tpg|DAA17324.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Bos taurus]
Length = 852
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/398 (49%), Positives = 273/398 (68%), Gaps = 9/398 (2%)
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E PT E E D+ +E+ EE +L++E +T K+ L L+L PTRELA+QV+ H
Sbjct: 346 EKPTPEQE-DNQVEKHDEEQAGKLKQELGGSTVPPKRP---LLGLVLTPTRELAVQVKQH 401
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ K+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++
Sbjct: 402 VDAVAKFTSIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKHPHLSNLRQLR 461
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQ 1013
LVIDE DRM+E GHF EL +L+ ++ ++ + RQT VFSATLT H + KK
Sbjct: 462 CLVIDEADRMVEKGHFAELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPARILHKKHA 521
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073
K K +K D +Q + PK++DLT K +TLTE+KI C+ DEKD YLYYF+
Sbjct: 522 KKMDKTAKLD---LLMQKIGMRGKPKVIDLTRKEATVETLTETKIHCETDEKDLYLYYFL 578
Query: 1074 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLA
Sbjct: 579 MQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLA 638
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA +EGL+L+L+ +++ + K++
Sbjct: 639 TDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATSEGLSLMLVGPEDVINFKKIY 698
Query: 1194 NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 699 KTLKKDEDIPLFPVQTKYMDAVKERIRLARQIEKAEYR 736
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 248/437 (56%), Gaps = 93/437 (21%)
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E PT E E D+ +E+ EE +L++E +T K+ L L+L PTRELA+QV+ H
Sbjct: 346 EKPTPEQE-DNQVEKHDEEQAGKLKQELGGSTVPPKRP---LLGLVLTPTRELAVQVKQH 401
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ K+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++
Sbjct: 402 VDAVAKFTSIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKHPHLSNLRQLR 461
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS 398
LVIDE DRM+E G HF EL +L+ ++ ++ +
Sbjct: 462 CLVIDEADRMVEKG----------------------------HFAELSQLLEMLSDSQYN 493
Query: 399 QPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 456
RQT VFSAT L H + KK K K + K+ L +
Sbjct: 494 PKRQTLVFSATLTLVHQAPARILHKKHAKKMDKTA------------------KLDLLMQ 535
Query: 457 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516
KIG+ PK++DLT K
Sbjct: 536 KIGMRG-----------------------------------------KPKVIDLTRKEAT 554
Query: 517 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA 576
+TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA
Sbjct: 555 VETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHA 614
Query: 577 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 636
M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTA
Sbjct: 615 CMHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTA 674
Query: 637 RANNEGLTVVLIESDEI 653
RA +EGL+++L+ +++
Sbjct: 675 RATSEGLSLMLVGPEDV 691
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ H+ K+T +K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 385 GLVLTPTRELAVQVKQHVDAVAKFTSIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRL 443
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 205 AFGIPILTGIV 215
AF IP++ ++
Sbjct: 245 AFAIPMIDAVL 255
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 822 AFGIPILTGIV 832
AF IP++ ++
Sbjct: 245 AFAIPMIDAVL 255
Score = 67.4 bits (163), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +EGL+L+L+ +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 666 YVHRSGRTARATSEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIR 725
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 726 LARQIEKAEYRNFQACLHNSWIEQ 749
>gi|355778814|gb|EHH63850.1| hypothetical protein EGM_16904 [Macaca fascicularis]
Length = 856
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 206/449 (45%), Positives = 293/449 (65%), Gaps = 18/449 (4%)
Query: 792 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 845
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 300 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 356
Query: 846 SGLE-EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 904
L+ E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 357 ENLDKEQIGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 413
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+K A +VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 414 IKTAILVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 473
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG 1022
M+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K +K
Sbjct: 474 MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKL 533
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082
D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LV
Sbjct: 534 D---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLV 590
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLD
Sbjct: 591 FANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLD 650
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
IP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+
Sbjct: 651 IPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDI 710
Query: 1203 PDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
P FP+ + ++K+RI LA+ IE E +
Sbjct: 711 PLFPVQTKYMDVVKERIRLARQIEKSEYR 739
Score = 316 bits (810), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 191/488 (39%), Positives = 267/488 (54%), Gaps = 102/488 (20%)
Query: 175 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 228
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 300 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 356
Query: 229 SGLE-EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 287
L+ E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 357 ENLDKEQIGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 413
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+K A +VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 414 IKTAILVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 473
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
M+E G HF EL +L+ + ++ + RQT VFS
Sbjct: 474 MVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQTLVFS 505
Query: 408 AT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
AT L H + KK K K + K+ L +KIG+
Sbjct: 506 ATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMRG--- 544
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI 525
PK++DLT +TLTE+KI
Sbjct: 545 --------------------------------------KPKVIDLTRNEATVETLTETKI 566
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+
Sbjct: 567 HCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLR 626
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL++
Sbjct: 627 NLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSL 686
Query: 646 VLIESDEI 653
+LI +++
Sbjct: 687 MLIGPEDV 694
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 669 YVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 728
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 729 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 764
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+L++ P I+VATPG L
Sbjct: 388 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLSRRPEIVVATPGRL 446
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTL 243
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 244 AFAIPVIHAVLQ 255
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTL 243
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 244 AFAIPVIHAVLQ 255
>gi|380814882|gb|AFE79315.1| ATP-dependent RNA helicase DDX24 [Macaca mulatta]
Length = 856
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 206/449 (45%), Positives = 293/449 (65%), Gaps = 18/449 (4%)
Query: 792 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 845
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 300 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 356
Query: 846 SGLE-EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 904
L+ E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 357 ENLDKEQIGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 413
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+K A +VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 414 IKTAILVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 473
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG 1022
M+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K +K
Sbjct: 474 MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKL 533
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082
D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LV
Sbjct: 534 D---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLV 590
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLD
Sbjct: 591 FANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLD 650
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
IP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+
Sbjct: 651 IPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDI 710
Query: 1203 PDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
P FP+ + ++K+RI LA+ IE E +
Sbjct: 711 PLFPVQTKYMDVVKERIRLARQIEKSEYR 739
Score = 316 bits (810), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 191/488 (39%), Positives = 267/488 (54%), Gaps = 102/488 (20%)
Query: 175 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 228
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 300 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 356
Query: 229 SGLE-EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 287
L+ E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 357 ENLDKEQIGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 413
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+K A +VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 414 IKTAILVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 473
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
M+E G HF EL +L+ + ++ + RQT VFS
Sbjct: 474 MVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQTLVFS 505
Query: 408 AT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
AT L H + KK K K + K+ L +KIG+
Sbjct: 506 ATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMRG--- 544
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI 525
PK++DLT +TLTE+KI
Sbjct: 545 --------------------------------------KPKVIDLTRNEATVETLTETKI 566
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+
Sbjct: 567 HCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLR 626
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL++
Sbjct: 627 NLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSL 686
Query: 646 VLIESDEI 653
+LI +++
Sbjct: 687 MLIGPEDV 694
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 669 YVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 728
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 729 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 764
Score = 74.3 bits (181), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+L++ P I+VATPG L
Sbjct: 388 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLSRRPEIVVATPGRL 446
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTL 243
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 244 AFAIPVIHAVLQ 255
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTL 243
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 244 AFAIPVIHAVLQ 255
>gi|355693530|gb|EHH28133.1| hypothetical protein EGK_18492 [Macaca mulatta]
gi|387541990|gb|AFJ71622.1| ATP-dependent RNA helicase DDX24 [Macaca mulatta]
Length = 856
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 206/449 (45%), Positives = 293/449 (65%), Gaps = 18/449 (4%)
Query: 792 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 845
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 300 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 356
Query: 846 SGLE-EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 904
L+ E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 357 ENLDKEQIGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 413
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+K A +VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 414 IKTAILVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 473
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG 1022
M+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K +K
Sbjct: 474 MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKL 533
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082
D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LV
Sbjct: 534 D---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLV 590
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLD
Sbjct: 591 FANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLD 650
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
IP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+
Sbjct: 651 IPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDI 710
Query: 1203 PDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
P FP+ + ++K+RI LA+ IE E +
Sbjct: 711 PLFPVQTKYMDVVKERIRLARQIEKSEYR 739
Score = 316 bits (809), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 191/488 (39%), Positives = 267/488 (54%), Gaps = 102/488 (20%)
Query: 175 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 228
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 300 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 356
Query: 229 SGLE-EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 287
L+ E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 357 ENLDKEQIGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 413
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+K A +VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 414 IKTAILVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 473
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
M+E G HF EL +L+ + ++ + RQT VFS
Sbjct: 474 MVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQTLVFS 505
Query: 408 AT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
AT L H + KK K K + K+ L +KIG+
Sbjct: 506 ATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMRG--- 544
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI 525
PK++DLT +TLTE+KI
Sbjct: 545 --------------------------------------KPKVIDLTRNEATVETLTETKI 566
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+
Sbjct: 567 HCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLR 626
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL++
Sbjct: 627 NLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSL 686
Query: 646 VLIESDEI 653
+LI +++
Sbjct: 687 MLIGPEDV 694
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 669 YVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 728
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 729 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 764
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+L++ P I+VATPG L
Sbjct: 388 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLSRRPEIVVATPGRL 446
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTL 243
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 244 AFAIPVIHAVLQ 255
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTL 243
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 244 AFAIPVIHAVLQ 255
>gi|197101980|ref|NP_001125038.1| ATP-dependent RNA helicase DDX24 [Pongo abelii]
gi|75061972|sp|Q5RDL2.1|DDX24_PONAB RecName: Full=ATP-dependent RNA helicase DDX24; AltName: Full=DEAD
box protein 24
gi|55726767|emb|CAH90145.1| hypothetical protein [Pongo abelii]
Length = 859
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/453 (45%), Positives = 292/453 (64%), Gaps = 26/453 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS D A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DTAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLDKEQTGNLKQELDDKSATCKTYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 472 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 531
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 532 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 588
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 589 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 648
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K
Sbjct: 649 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 708
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 709 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYR 741
Score = 316 bits (809), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 190/492 (38%), Positives = 266/492 (54%), Gaps = 110/492 (22%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS D A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DTAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLDKEQTGNLKQELDDKSATCKTYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 472 EADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQT 503
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 504 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 545
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 546 G-----------------------------------------KPKVIDLTRNEATVETLT 564
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 565 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 624
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NE
Sbjct: 625 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE 684
Query: 642 GLTVVLIESDEI 653
GL+++LI +++
Sbjct: 685 GLSLMLIGPEDV 696
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 671 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 730
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 731 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 766
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 390 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 448
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ + + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQVLTLAPAIRDKLDILGAAETGSGKTL 245
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ + + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQVLTLAPAIRDKLDILGAAETGSGKTL 245
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
>gi|84578997|dbj|BAE72932.1| hypothetical protein [Macaca fascicularis]
Length = 819
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/464 (44%), Positives = 300/464 (64%), Gaps = 19/464 (4%)
Query: 792 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 845
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 263 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 319
Query: 846 SGLE-EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 904
L+ E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 320 ENLDKEQIGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 376
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+K A +VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 377 IKTAILVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 436
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG 1022
M+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K +K
Sbjct: 437 MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKL 496
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082
D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LV
Sbjct: 497 D---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLV 553
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLD
Sbjct: 554 FANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLD 613
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
IP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+
Sbjct: 614 IPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDI 673
Query: 1203 PDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSG 1245
P FP+ + ++K+RI LA+ IE E + + ++W+ ++
Sbjct: 674 PLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 717
Score = 316 bits (809), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 191/488 (39%), Positives = 267/488 (54%), Gaps = 102/488 (20%)
Query: 175 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 228
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 263 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 319
Query: 229 SGLE-EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 287
L+ E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 320 ENLDKEQIGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 376
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+K A +VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 377 IKTAILVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 436
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
M+E G HF EL +L+ + ++ + RQT VFS
Sbjct: 437 MVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQTLVFS 468
Query: 408 AT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
AT L H + KK K K + K+ L +KIG+
Sbjct: 469 ATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMRG--- 507
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI 525
PK++DLT +TLTE+KI
Sbjct: 508 --------------------------------------KPKVIDLTRNEATVETLTETKI 529
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+
Sbjct: 530 HCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLR 589
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL++
Sbjct: 590 NLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSL 649
Query: 646 VLIESDEI 653
+LI +++
Sbjct: 650 MLIGPEDV 657
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 632 YVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 691
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 692 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 727
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+L++ P I+VATPG L
Sbjct: 351 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLSRRPEIVVATPGRL 409
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 147 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTL 206
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 207 AFAIPVIHAVLQ 218
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 147 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTL 206
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 207 AFAIPVIHAVLQ 218
>gi|440905703|gb|ELR56052.1| ATP-dependent RNA helicase DDX24 [Bos grunniens mutus]
Length = 850
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/398 (49%), Positives = 273/398 (68%), Gaps = 9/398 (2%)
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E PT E E D+ +E+ EE +L++E +T K+ L L+L PTRELA+QV+ H
Sbjct: 346 EKPTPEQE-DNQVEKHDEEQAGKLKQELGGSTVPPKRP---LLGLVLTPTRELAVQVKQH 401
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ K+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++
Sbjct: 402 VDAVAKFTSIKTAILVGGMSTQKQQRLLNRQPEIVIATPGRLWELVKEKHPHLSNLRQLR 461
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQ 1013
LVIDE DRM+E GHF EL +L+ ++ ++ + RQT VFSATLT H + KK
Sbjct: 462 CLVIDEADRMVEKGHFAELSQLLEVLSDSQYNPKRQTLVFSATLTLVHQAPARILHKKHA 521
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073
K K +K D +Q + PK++DLT K +TLTE+KI C+ DEKD YLYYF+
Sbjct: 522 KKMDKTAKLD---LLMQKIGMRGKPKVIDLTRKEATVETLTETKIHCETDEKDLYLYYFL 578
Query: 1074 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLA
Sbjct: 579 MQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLA 638
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA +EGL+L+L+ +++ + K++
Sbjct: 639 TDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATSEGLSLMLVGPEDVINFKKIY 698
Query: 1194 NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 699 KTLKKDEDIPLFPVQTQYMDAVKERIRLARQIEKAEYR 736
Score = 316 bits (809), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 248/437 (56%), Gaps = 93/437 (21%)
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E PT E E D+ +E+ EE +L++E +T K+ L L+L PTRELA+QV+ H
Sbjct: 346 EKPTPEQE-DNQVEKHDEEQAGKLKQELGGSTVPPKRP---LLGLVLTPTRELAVQVKQH 401
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ K+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++
Sbjct: 402 VDAVAKFTSIKTAILVGGMSTQKQQRLLNRQPEIVIATPGRLWELVKEKHPHLSNLRQLR 461
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS 398
LVIDE DRM+E G HF EL +L+ ++ ++ +
Sbjct: 462 CLVIDEADRMVEKG----------------------------HFAELSQLLEVLSDSQYN 493
Query: 399 QPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 456
RQT VFSAT L H + KK K K + K+ L +
Sbjct: 494 PKRQTLVFSATLTLVHQAPARILHKKHAKKMDKTA------------------KLDLLMQ 535
Query: 457 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516
KIG+ PK++DLT K
Sbjct: 536 KIGMRG-----------------------------------------KPKVIDLTRKEAT 554
Query: 517 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA 576
+TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA
Sbjct: 555 VETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHA 614
Query: 577 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 636
M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTA
Sbjct: 615 CMHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTA 674
Query: 637 RANNEGLTVVLIESDEI 653
RA +EGL+++L+ +++
Sbjct: 675 RATSEGLSLMLVGPEDV 691
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ H+ K+T +K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 385 GLVLTPTRELAVQVKQHVDAVAKFTSIKTAILVGGMSTQKQQRLLNRQPEIVIATPGRL 443
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 205 AFGIPILTGIV 215
AF IP++ ++
Sbjct: 245 AFAIPMIDAVL 255
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 822 AFGIPILTGIV 832
AF IP++ ++
Sbjct: 245 AFAIPMIDAVL 255
Score = 67.4 bits (163), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +EGL+L+L+ +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 666 YVHRSGRTARATSEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTQYMDAVKERIR 725
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 726 LARQIEKAEYRNFQACLHNSWIEQ 749
>gi|194385874|dbj|BAG65312.1| unnamed protein product [Homo sapiens]
Length = 609
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 206/468 (44%), Positives = 299/468 (63%), Gaps = 27/468 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 52 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 104
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 105 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 161
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 162 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 221
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 222 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 281
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 282 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 338
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 339 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 398
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA N GL+L+LI +++ + K++ +L+K
Sbjct: 399 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNGGLSLMLIGPEDVINFKKIYKTLKK 458
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSG 1245
D+P FP+ + ++K+RI LA+ IE E + + ++W+ ++
Sbjct: 459 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 506
Score = 315 bits (808), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 190/492 (38%), Positives = 266/492 (54%), Gaps = 110/492 (22%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 52 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 104
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 105 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 161
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 162 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 221
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 222 EADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQT 253
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 254 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 295
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 296 G-----------------------------------------KPKVIDLTRNEATVETLT 314
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 315 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 374
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA N
Sbjct: 375 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNG 434
Query: 642 GLTVVLIESDEI 653
GL+++LI +++
Sbjct: 435 GLSLMLIGPEDV 446
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 140 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 198
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA N GL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 421 YVHRSGRTARATNGGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 480
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 481 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 516
>gi|393907272|gb|EFO18351.2| hypothetical protein LOAG_10144 [Loa loa]
Length = 698
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 212/516 (41%), Positives = 320/516 (62%), Gaps = 43/516 (8%)
Query: 742 KQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPS 801
++T + +N+E+ + ED M+ W+ I T+++A+ GF P +IQ +V+PS
Sbjct: 109 EKTMSVSNEEIEYDEVDGREDGIPDMSGWINLYISNTVLKAIADMGFTEPMEIQRLVIPS 168
Query: 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861
A+ R DI+GAAETGSGKTLAFG+P++ ++ A + E E
Sbjct: 169 AIRDRFDIIGAAETGSGKTLAFGVPVVERLL-------------------ANQSFAESSE 209
Query: 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921
+ + + ALILAPTREL +Q++NHI KYT KVA +VGG+S +KQ R
Sbjct: 210 Q-----------KKSIRALILAPTRELVMQIRNHIHALLKYTSFKVASIVGGLSLQKQER 258
Query: 922 ILNKCPHILVATPGRLWEFIQLGHFH--LTELYKINYLVIDETDRMIESGHFPELKNILD 979
IL P I++ATPGRL + L++ + LV+DETDRMIE GHF +L++ILD
Sbjct: 259 ILKYVPEIVIATPGRLLALMTSAEADSCLSDWSNLQCLVVDETDRMIEKGHFEDLQHILD 318
Query: 980 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP- 1038
+ TS+ QTFVFSATLT++ LN K+ + K+S D I RL ++ I+
Sbjct: 319 -IIRKNTSKKLQTFVFSATLTYT-HPVLN-KRSDVSATKMS-ADEKISRLIEITGIRKEK 374
Query: 1039 -KIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 1096
KI+D+T + G K + E++I C + EKD+ L Y + ++ GRTLVF NS+ + +RL +
Sbjct: 375 HKIIDITGERGTAKAVVEARINCNNLLEKDTSLIYLLNRYAGRTLVFTNSVDASRRLHGI 434
Query: 1097 LTMLKCSPLP--LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154
L L+ P+P LHA M Q++RLKNL++F + NS+LLATDVAARGLDI ++HVIHY V
Sbjct: 435 LKQLEHKPVPLMLHAKMMQKKRLKNLEKFAIEENSVLLATDVAARGLDIRDVQHVIHYQV 494
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE-SVLS 1213
P+T+E+YIHR GRTARA EGL ++LI+S ++P Y ++ +L ++ + P FP+D +
Sbjct: 495 PKTAELYIHRCGRTARATKEGLAVLLIDSQDVPYYQRICRNLSREKEFPIFPLDSPELYG 554
Query: 1214 LIKKRIDLAKSIEYLESKIKK-NRPDNWLHRSGRTA 1248
++K R+++A ++E L+ ++KK + W ++ +A
Sbjct: 555 VLKNRVEVATAVEALDHRMKKMHSKQTWFEKAAASA 590
Score = 316 bits (810), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 202/535 (37%), Positives = 285/535 (53%), Gaps = 121/535 (22%)
Query: 125 KQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPS 184
++T + +N+E+ + ED M+ W+ I T+++A+ GF P +IQ +V+PS
Sbjct: 109 EKTMSVSNEEIEYDEVDGREDGIPDMSGWINLYISNTVLKAIADMGFTEPMEIQRLVIPS 168
Query: 185 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 244
A+ R DI+GAAETGSGKTLAFG+P++ ++ A + E E
Sbjct: 169 AIRDRFDIIGAAETGSGKTLAFGVPVVERLL-------------------ANQSFAESSE 209
Query: 245 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 304
+ + + ALILAPTREL +Q++NHI KYT KVA +VGG+S +KQ R
Sbjct: 210 Q-----------KKSIRALILAPTRELVMQIRNHIHALLKYTSFKVASIVGGLSLQKQER 258
Query: 305 ILNKCPHILVATPGRLWEFIQLGHFH--LTELYKINYLVIDETDRMIESGHFPELKNILD 362
IL P I++ATPGRL + L++ + LV+DETDRMIE G
Sbjct: 259 ILKYVPEIVIATPGRLLALMTSAEADSCLSDWSNLQCLVVDETDRMIEKG---------- 308
Query: 363 RVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 422
HF +L++ILD + TS+ QTFVFSATLT++ LN K+
Sbjct: 309 ------------------HFEDLQHILD-IIRKNTSKKLQTFVFSATLTYT-HPVLN-KR 347
Query: 423 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482
+ K+S + KI L E GI K KH
Sbjct: 348 SDVSATKMSADE---------------KISRLIEITGIRKE--------KH--------- 375
Query: 483 FILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFIL 541
KI+D+T + G K + E++I C + EKD+ L Y +
Sbjct: 376 -----------------------KIIDITGERGTAKAVVEARINCNNLLEKDTSLIYLLN 412
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL--HASMNQRQRLKNLDRFRDQNNSILL 599
++ GRTLVF NS+ + +RL +L L+ P+PL HA M Q++RLKNL++F + NS+LL
Sbjct: 413 RYAGRTLVFTNSVDASRRLHGILKQLEHKPVPLMLHAKMMQKKRLKNLEKFAIEENSVLL 472
Query: 600 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
ATDVAARGLDI ++HVIHY VP+T+E+YIHR GRTARA EGL V+LI+S ++P
Sbjct: 473 ATDVAARGLDIRDVQHVIHYQVPKTAELYIHRCGRTARATKEGLAVLLIDSQDVP 527
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 63/95 (66%), Gaps = 2/95 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE-SVLSLIKKRI 1298
++HR GRTARA EGL ++LI+S ++P Y ++ +L ++ + P FP+D + ++K R+
Sbjct: 501 YIHRCGRTARATKEGLAVLLIDSQDVPYYQRICRNLSREKEFPIFPLDSPELYGVLKNRV 560
Query: 1299 DLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIID 1332
++A ++E L+ ++KK + W EKAA D+ +D
Sbjct: 561 EVATAVEALDHRMKKMHSKQTWFEKAAASADLDLD 595
Score = 77.4 bits (189), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 48/69 (69%)
Query: 1346 ESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 1405
ES + S ALILAPTREL +Q++NHI KYT KVA +VGG+S +KQ RIL P
Sbjct: 206 ESSEQKKSIRALILAPTRELVMQIRNHIHALLKYTSFKVASIVGGLSLQKQERILKYVPE 265
Query: 1406 ILVATPGAL 1414
I++ATPG L
Sbjct: 266 IVIATPGRL 274
>gi|312088074|ref|XP_003145719.1| hypothetical protein LOAG_10144 [Loa loa]
Length = 699
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 212/516 (41%), Positives = 320/516 (62%), Gaps = 43/516 (8%)
Query: 742 KQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPS 801
++T + +N+E+ + ED M+ W+ I T+++A+ GF P +IQ +V+PS
Sbjct: 110 EKTMSVSNEEIEYDEVDGREDGIPDMSGWINLYISNTVLKAIADMGFTEPMEIQRLVIPS 169
Query: 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861
A+ R DI+GAAETGSGKTLAFG+P++ ++ A + E E
Sbjct: 170 AIRDRFDIIGAAETGSGKTLAFGVPVVERLL-------------------ANQSFAESSE 210
Query: 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921
+ + + ALILAPTREL +Q++NHI KYT KVA +VGG+S +KQ R
Sbjct: 211 Q-----------KKSIRALILAPTRELVMQIRNHIHALLKYTSFKVASIVGGLSLQKQER 259
Query: 922 ILNKCPHILVATPGRLWEFIQLGHFH--LTELYKINYLVIDETDRMIESGHFPELKNILD 979
IL P I++ATPGRL + L++ + LV+DETDRMIE GHF +L++ILD
Sbjct: 260 ILKYVPEIVIATPGRLLALMTSAEADSCLSDWSNLQCLVVDETDRMIEKGHFEDLQHILD 319
Query: 980 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP- 1038
+ TS+ QTFVFSATLT++ LN K+ + K+S D I RL ++ I+
Sbjct: 320 -IIRKNTSKKLQTFVFSATLTYT-HPVLN-KRSDVSATKMS-ADEKISRLIEITGIRKEK 375
Query: 1039 -KIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 1096
KI+D+T + G K + E++I C + EKD+ L Y + ++ GRTLVF NS+ + +RL +
Sbjct: 376 HKIIDITGERGTAKAVVEARINCNNLLEKDTSLIYLLNRYAGRTLVFTNSVDASRRLHGI 435
Query: 1097 LTMLKCSPLP--LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154
L L+ P+P LHA M Q++RLKNL++F + NS+LLATDVAARGLDI ++HVIHY V
Sbjct: 436 LKQLEHKPVPLMLHAKMMQKKRLKNLEKFAIEENSVLLATDVAARGLDIRDVQHVIHYQV 495
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE-SVLS 1213
P+T+E+YIHR GRTARA EGL ++LI+S ++P Y ++ +L ++ + P FP+D +
Sbjct: 496 PKTAELYIHRCGRTARATKEGLAVLLIDSQDVPYYQRICRNLSREKEFPIFPLDSPELYG 555
Query: 1214 LIKKRIDLAKSIEYLESKIKK-NRPDNWLHRSGRTA 1248
++K R+++A ++E L+ ++KK + W ++ +A
Sbjct: 556 VLKNRVEVATAVEALDHRMKKMHSKQTWFEKAAASA 591
Score = 316 bits (810), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 202/535 (37%), Positives = 285/535 (53%), Gaps = 121/535 (22%)
Query: 125 KQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPS 184
++T + +N+E+ + ED M+ W+ I T+++A+ GF P +IQ +V+PS
Sbjct: 110 EKTMSVSNEEIEYDEVDGREDGIPDMSGWINLYISNTVLKAIADMGFTEPMEIQRLVIPS 169
Query: 185 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 244
A+ R DI+GAAETGSGKTLAFG+P++ ++ A + E E
Sbjct: 170 AIRDRFDIIGAAETGSGKTLAFGVPVVERLL-------------------ANQSFAESSE 210
Query: 245 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 304
+ + + ALILAPTREL +Q++NHI KYT KVA +VGG+S +KQ R
Sbjct: 211 Q-----------KKSIRALILAPTRELVMQIRNHIHALLKYTSFKVASIVGGLSLQKQER 259
Query: 305 ILNKCPHILVATPGRLWEFIQLGHFH--LTELYKINYLVIDETDRMIESGHFPELKNILD 362
IL P I++ATPGRL + L++ + LV+DETDRMIE G
Sbjct: 260 ILKYVPEIVIATPGRLLALMTSAEADSCLSDWSNLQCLVVDETDRMIEKG---------- 309
Query: 363 RVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 422
HF +L++ILD + TS+ QTFVFSATLT++ LN K+
Sbjct: 310 ------------------HFEDLQHILD-IIRKNTSKKLQTFVFSATLTYT-HPVLN-KR 348
Query: 423 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482
+ K+S + KI L E GI K KH
Sbjct: 349 SDVSATKMSADE---------------KISRLIEITGIRKE--------KH--------- 376
Query: 483 FILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFIL 541
KI+D+T + G K + E++I C + EKD+ L Y +
Sbjct: 377 -----------------------KIIDITGERGTAKAVVEARINCNNLLEKDTSLIYLLN 413
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL--HASMNQRQRLKNLDRFRDQNNSILL 599
++ GRTLVF NS+ + +RL +L L+ P+PL HA M Q++RLKNL++F + NS+LL
Sbjct: 414 RYAGRTLVFTNSVDASRRLHGILKQLEHKPVPLMLHAKMMQKKRLKNLEKFAIEENSVLL 473
Query: 600 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
ATDVAARGLDI ++HVIHY VP+T+E+YIHR GRTARA EGL V+LI+S ++P
Sbjct: 474 ATDVAARGLDIRDVQHVIHYQVPKTAELYIHRCGRTARATKEGLAVLLIDSQDVP 528
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 63/95 (66%), Gaps = 2/95 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE-SVLSLIKKRI 1298
++HR GRTARA EGL ++LI+S ++P Y ++ +L ++ + P FP+D + ++K R+
Sbjct: 502 YIHRCGRTARATKEGLAVLLIDSQDVPYYQRICRNLSREKEFPIFPLDSPELYGVLKNRV 561
Query: 1299 DLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIID 1332
++A ++E L+ ++KK + W EKAA D+ +D
Sbjct: 562 EVATAVEALDHRMKKMHSKQTWFEKAAASADLDLD 596
Score = 77.4 bits (189), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 48/69 (69%)
Query: 1346 ESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 1405
ES + S ALILAPTREL +Q++NHI KYT KVA +VGG+S +KQ RIL P
Sbjct: 207 ESSEQKKSIRALILAPTRELVMQIRNHIHALLKYTSFKVASIVGGLSLQKQERILKYVPE 266
Query: 1406 ILVATPGAL 1414
I++ATPG L
Sbjct: 267 IVIATPGRL 275
>gi|417405017|gb|JAA49234.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 863
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/405 (47%), Positives = 270/405 (66%), Gaps = 7/405 (1%)
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
+ ++ + P ++++ L+EE LE+ E T + L L+L PTREL
Sbjct: 344 SSLIRETPVPKQDEDRQEKLDEEWTGKLEQ--ELGGETVTCKAHPKRPLLGLVLTPTREL 401
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+QV+ H+ ++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE ++ H HL
Sbjct: 402 AVQVKQHMDAVARFTGIKTAILVGGMSTQKQQRMLNRQPEIVVATPGRLWELVKEKHPHL 461
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNS 1006
+ L ++ LVIDE DRM+E GHF EL +L+ ++ ++ + RQT VFSATLT H
Sbjct: 462 SNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPAR 521
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
+ KK K K +K D +Q + PK++DLT +TLTE+KI C++DEKD
Sbjct: 522 ILHKKHTKKIDKTAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCENDEKD 578
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
YLYYF++QHPGRTLVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F
Sbjct: 579 LYLYYFLMQHPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARL 638
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+ +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++
Sbjct: 639 EDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSLMLIGPEDM 698
Query: 1187 PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ K++ +L+K D+P FP+ + +K RI LA+ IE E +
Sbjct: 699 INFKKIYKTLKKDEDIPFFPVQTKYMDAVKGRIQLARQIEKAEYR 743
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 179/444 (40%), Positives = 249/444 (56%), Gaps = 91/444 (20%)
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
+ ++ + P ++++ L+EE LE+ E T + L L+L PTREL
Sbjct: 344 SSLIRETPVPKQDEDRQEKLDEEWTGKLEQ--ELGGETVTCKAHPKRPLLGLVLTPTREL 401
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+QV+ H+ ++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE ++ H HL
Sbjct: 402 AVQVKQHMDAVARFTGIKTAILVGGMSTQKQQRMLNRQPEIVVATPGRLWELVKEKHPHL 461
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L ++ LVIDE DRM+E G HF EL +L+
Sbjct: 462 SNLRQLRCLVIDEADRMVEKG----------------------------HFAELSQLLEM 493
Query: 392 VTMTETSQPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
++ ++ + RQT VFSAT L H + KK +KK+ K +
Sbjct: 494 LSDSQYNPKRQTLVFSATLTLVHQAPARILHKK---HTKKIDK---------------TA 535
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
K+ L +KIG+ PK++D
Sbjct: 536 KLDLLMQKIGMRG-----------------------------------------KPKVID 554
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
LT +TLTE+KI C++DEKD YLYYF++QHPGRTLVF NSIS +KRL+ LL +L
Sbjct: 555 LTRNEATVETLTETKIHCENDEKDLYLYYFLMQHPGRTLVFANSISCIKRLSGLLKVLDI 614
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+
Sbjct: 615 MPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYV 674
Query: 630 HRSGRTARANNEGLTVVLIESDEI 653
HRSGRTARA NEGL+++LI +++
Sbjct: 675 HRSGRTARAANEGLSLMLIGPEDM 698
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + +K RI
Sbjct: 673 YVHRSGRTARAANEGLSLMLIGPEDMINFKKIYKTLKKDEDIPFFPVQTKYMDAVKGRIQ 732
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I +D+E
Sbjct: 733 LARQIEKAEYRNFQACLHNSWIEQAAAALEIELDEE 768
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ H+ ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 392 GLVLTPTRELAVQVKQHMDAVARFTGIKTAILVGGMSTQKQQRMLNRQPEIVVATPGRL 450
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DQKADVSAWKDLFVPKPVLRALSFLGFTAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 245 AFAIPMIHSVLQ 256
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DQKADVSAWKDLFVPKPVLRALSFLGFTAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 245 AFAIPMIHSVLQ 256
>gi|403298098|ref|XP_003939872.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Saimiri boliviensis
boliviensis]
Length = 860
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/413 (46%), Positives = 280/413 (67%), Gaps = 12/413 (2%)
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
+N EE++ D +E+ + +EL+++SA + ++ L L+L PTRELA+QV+ H
Sbjct: 354 QNENEEEKLD---KEQTGNLKQELDDKSATCKAYPERP---LLGLVLTPTRELALQVKQH 407
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
I ++T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE I+ H+HL L ++
Sbjct: 408 IDAVARFTGIKTAILVGGMSTQKQQRMLNRYPEIVIATPGRLWELIKEKHYHLRNLRQLR 467
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQ 1013
LV+DE DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK
Sbjct: 468 CLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHT 527
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073
K K +K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF+
Sbjct: 528 KKMDKTAKLD---LLMQKIGMRGKPKVIDLTRNEATAETLTETKIHCETDEKDLYLYYFL 584
Query: 1074 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLA
Sbjct: 585 MQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFACLEDCVLLA 644
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++
Sbjct: 645 TDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIY 704
Query: 1194 NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSG 1245
+L+K D+P FP+ + ++K+RI LA+ IE E + + ++W+ ++
Sbjct: 705 KTLKKDEDIPLFPVQTKYMDVVKERIRLARLIEKSEYRNFQACLHNSWIEQAA 757
Score = 312 bits (800), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 177/437 (40%), Positives = 247/437 (56%), Gaps = 95/437 (21%)
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
+N EE++ D +E+ + +EL+++SA + ++ L L+L PTRELA+QV+ H
Sbjct: 354 QNENEEEKLD---KEQTGNLKQELDDKSATCKAYPERP---LLGLVLTPTRELALQVKQH 407
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
I ++T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE I+ H+HL L ++
Sbjct: 408 IDAVARFTGIKTAILVGGMSTQKQQRMLNRYPEIVIATPGRLWELIKEKHYHLRNLRQLR 467
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS 398
LV+DE DRM+E G HF EL +L+ + ++ +
Sbjct: 468 CLVVDEADRMVEKG----------------------------HFAELSQLLEMLNDSQYN 499
Query: 399 QPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 456
RQT VFSAT L H + KK K K + K+ L +
Sbjct: 500 PKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQ 541
Query: 457 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516
KIG+ PK++DLT
Sbjct: 542 KIGMRG-----------------------------------------KPKVIDLTRNEAT 560
Query: 517 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA 576
+TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA
Sbjct: 561 AETLTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHA 620
Query: 577 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 636
M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTA
Sbjct: 621 CMHQKQRLRNLEQFACLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTA 680
Query: 637 RANNEGLTVVLIESDEI 653
RA NEGL+++LI +++
Sbjct: 681 RATNEGLSLMLIGPEDV 697
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 672 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 731
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 732 LARLIEKSEYRNFQACLHNSWIEQAAAALEIELEED 767
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 391 GLVLTPTRELALQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRYPEIVIATPGRL 449
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 188 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 247
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 248 AFAIPMIHAVLQ 259
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 188 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 247
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 248 AFAIPMIHAVLQ 259
>gi|296215803|ref|XP_002754286.1| PREDICTED: ATP-dependent RNA helicase DDX24 isoform 1 [Callithrix
jacchus]
Length = 856
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/393 (48%), Positives = 270/393 (68%), Gaps = 11/393 (2%)
Query: 857 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST 916
+EL+++SA + K+ L L+L PTRELA+QV+ HI ++T +K A +VGGMST
Sbjct: 369 QELDDKSATCKAYPKRP---LLGLVLTPTRELALQVKQHIDAVARFTGIKTAILVGGMST 425
Query: 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 976
+KQ R+LN+ P I++ATPGRLWE I+ H+HL L ++ LV+DE DRM+E GHF EL
Sbjct: 426 QKQQRMLNRYPEIVIATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQ 485
Query: 977 ILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 1034
+L+ + ++ + RQT VFSATLT H + KK K K +K D L +
Sbjct: 486 LLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLD----LLMHKIG 541
Query: 1035 IKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 1093
I+ PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL
Sbjct: 542 IRGKPKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRL 601
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY
Sbjct: 602 SGLLKVLDIMPLTLHACMHQKQRLRNLEQFACLEDCVLLATDVAARGLDIPKVQHVIHYQ 661
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLS 1213
VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ +
Sbjct: 662 VPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMD 721
Query: 1214 LIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSG 1245
++K+RI LA+ IE E + + ++W+ ++
Sbjct: 722 VVKERIRLARLIEKSEYRNFQACLHNSWIEQAA 754
Score = 316 bits (809), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 176/416 (42%), Positives = 236/416 (56%), Gaps = 92/416 (22%)
Query: 240 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST 299
+EL+++SA + K+ L L+L PTRELA+QV+ HI ++T +K A +VGGMST
Sbjct: 369 QELDDKSATCKAYPKRP---LLGLVLTPTRELALQVKQHIDAVARFTGIKTAILVGGMST 425
Query: 300 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 359
+KQ R+LN+ P I++ATPGRLWE I+ H+HL L ++ LV+DE DRM+E G
Sbjct: 426 QKQQRMLNRYPEIVIATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG------- 478
Query: 360 ILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNS 417
HF EL +L+ + ++ + RQT VFSATLT H
Sbjct: 479 ---------------------HFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPAR 517
Query: 418 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 477
+ KK K K +K D L KIGI
Sbjct: 518 ILHKKHTKKMDKTAKLD------------------LLMHKIGIRG--------------- 544
Query: 478 SYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 537
PK++DLT +TLTE+KI C+ DEKD YLY
Sbjct: 545 --------------------------KPKVIDLTRNEATVETLTETKIHCETDEKDLYLY 578
Query: 538 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597
YF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +
Sbjct: 579 YFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFACLEDCV 638
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 639 LLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDV 694
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 669 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 728
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 729 LARLIEKSEYRNFQACLHNSWIEQAAAALEIELEED 764
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 388 GLVLTPTRELALQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRYPEIVIATPGRL 446
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 245 AFAIPMIHAVLQ 256
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 245 AFAIPMIHAVLQ 256
>gi|344273652|ref|XP_003408633.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Loxodonta africana]
Length = 858
Score = 375 bits (963), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/377 (50%), Positives = 260/377 (68%), Gaps = 6/377 (1%)
Query: 858 ELEEESANTTEFVKK-TRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST 916
EL++ES K+ R+ L L+L PTRELA+QV+ HI K+T ++ A +VGGMST
Sbjct: 367 ELKQESNGEIATCKEHPRHPLLGLVLTPTRELAVQVKQHIDAVAKFTGIRTAILVGGMST 426
Query: 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 976
+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LV+DE DRM+E GHF EL
Sbjct: 427 QKQERMLNRQPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVVDEADRMVEKGHFDELSQ 486
Query: 977 ILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 1034
+L+ ++ ++ + RQT VFSATLT H + KK K K +K D +Q +
Sbjct: 487 LLEMLSDSQYNPKRQTLVFSATLTLVHQAPTRILHKKHTKKMDKTAKLD---LLMQKIGM 543
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLT 1094
PK++DLT +TL E+KI C+ DEKD YLYYF++QHPGRTLVF NSIS VKRL+
Sbjct: 544 RGKPKVIDLTRNEATVETLIETKIHCETDEKDLYLYYFLMQHPGRTLVFANSISCVKRLS 603
Query: 1095 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154
LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY V
Sbjct: 604 GLLKVLDIMPLTLHACMHQKQRLRNLEQFARLKDCVLLATDVAARGLDIPEVQHVIHYQV 663
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSL 1214
PRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ +
Sbjct: 664 PRTSEIYVHRSGRTARATNEGLSLLLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDA 723
Query: 1215 IKKRIDLAKSIEYLESK 1231
+K+RI LA+ IE E +
Sbjct: 724 VKERIRLAQQIEKAEYR 740
Score = 311 bits (798), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 175/416 (42%), Positives = 235/416 (56%), Gaps = 90/416 (21%)
Query: 241 ELEEESANTTEFVKK-TRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST 299
EL++ES K+ R+ L L+L PTRELA+QV+ HI K+T ++ A +VGGMST
Sbjct: 367 ELKQESNGEIATCKEHPRHPLLGLVLTPTRELAVQVKQHIDAVAKFTGIRTAILVGGMST 426
Query: 300 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 359
+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LV+DE DRM+E G
Sbjct: 427 QKQERMLNRQPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVVDEADRMVEKG------- 479
Query: 360 ILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT--LTHSLKNS 417
HF EL +L+ ++ ++ + RQT VFSAT L H
Sbjct: 480 ---------------------HFDELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPTR 518
Query: 418 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 477
+ KK K K + K+ L +KIG+
Sbjct: 519 ILHKKHTKKMDKTA------------------KLDLLMQKIGMRG--------------- 545
Query: 478 SYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 537
PK++DLT +TL E+KI C+ DEKD YLY
Sbjct: 546 --------------------------KPKVIDLTRNEATVETLIETKIHCETDEKDLYLY 579
Query: 538 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597
YF++QHPGRTLVF NSIS VKRL+ LL +L PL LHA M+Q+QRL+NL++F + +
Sbjct: 580 YFLMQHPGRTLVFANSISCVKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLKDCV 639
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 640 LLATDVAARGLDIPEVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLLLIGPEDV 695
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ L+L PTRELA+QV+ HI K+T ++ A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 384 RHPLLGLVLTPTRELAVQVKQHIDAVAKFTGIRTAILVGGMSTQKQERMLNRQPEIVIAT 443
Query: 1411 PGAL 1414
PG L
Sbjct: 444 PGRL 447
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +PE ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 182 DQKADVSAWKNLFVPEGVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 241
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 242 AFAIPMIHAVLQ 253
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +PE ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 182 DQKADVSAWKNLFVPEGVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 241
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 242 AFAIPMIHAVLQ 253
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 670 YVHRSGRTARATNEGLSLLLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIR 729
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 730 LAQQIEKAEYRNFQACLHNSWIEQ 753
>gi|410962873|ref|XP_003987993.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Felis catus]
Length = 856
Score = 375 bits (962), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/393 (49%), Positives = 268/393 (68%), Gaps = 9/393 (2%)
Query: 844 NDSGLEEEA-EEVLEELEEESANTTEFVKK-TRNKLYALILAPTRELAIQVQNHILDAGK 901
D G EE+ EE L++E T K + L L+L PTRELA+QV+ HI K
Sbjct: 347 QDEGKEEKLDEEQTGGLKQELGGKTATCKAHPKRPLLGLVLTPTRELAVQVKQHIDAVAK 406
Query: 902 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE I+ H HL+ L ++ LV+DE
Sbjct: 407 FTGIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELIKEKHPHLSNLKQLRCLVVDE 466
Query: 962 TDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKV 1019
DRM+E GHF EL +L+ ++ ++ + RQT +FSATLT H + KK K K
Sbjct: 467 ADRMVEKGHFAELSQLLEMLSDSQYNPKRQTLIFSATLTLVHQAPARILHKKHTKKIDKT 526
Query: 1020 SKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D ++++ ++ PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 527 AKLDLLVQKI----GMRGKPKVIDLTRNEATVETLTETKIHCEADEKDFYLYYFLMQYPG 582
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
RTLVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 583 RTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 642
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K
Sbjct: 643 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 702
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + +K+RI LA+ IE E +
Sbjct: 703 DEDIPLFPVQTKYMDAVKERIHLARQIEKAEYR 735
Score = 312 bits (799), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 180/431 (41%), Positives = 242/431 (56%), Gaps = 91/431 (21%)
Query: 227 NDSGLEEEA-EEVLEELEEESANTTEFVKK-TRNKLYALILAPTRELAIQVQNHILDAGK 284
D G EE+ EE L++E T K + L L+L PTRELA+QV+ HI K
Sbjct: 347 QDEGKEEKLDEEQTGGLKQELGGKTATCKAHPKRPLLGLVLTPTRELAVQVKQHIDAVAK 406
Query: 285 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE I+ H HL+ L ++ LV+DE
Sbjct: 407 FTGIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELIKEKHPHLSNLKQLRCLVVDE 466
Query: 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404
DRM+E G HF EL +L+ ++ ++ + RQT
Sbjct: 467 ADRMVEKG----------------------------HFAELSQLLEMLSDSQYNPKRQTL 498
Query: 405 VFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
+FSAT L H + KK K K +K L++ L +KIG+
Sbjct: 499 IFSATLTLVHQAPARILHKKHTKKIDKTAK-----------LDL-------LVQKIGMRG 540
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
PK++DLT +TLTE
Sbjct: 541 -----------------------------------------KPKVIDLTRNEATVETLTE 559
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M+Q+Q
Sbjct: 560 TKIHCEADEKDFYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQ 619
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
RL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEG
Sbjct: 620 RLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEG 679
Query: 643 LTVVLIESDEI 653
L+++LI +++
Sbjct: 680 LSLMLIGPEDV 690
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 384 GLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRL 442
Score = 70.1 bits (170), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 665 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIH 724
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 725 LARQIEKAEYRNFQACLHNSWIEQ 748
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D + W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 184 DQKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 243
Query: 205 AFGIPILTGIVNKL--ENPTEEDENDSGLEEEA 235
AF IP++ ++ + PT N L EA
Sbjct: 244 AFAIPMIHAVLQWQVKKKPTPTLGNPGALPSEA 276
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D + W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 184 DQKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 243
Query: 822 AFGIPILTGIVNKL--ENPTEEDENDSGLEEEA 852
AF IP++ ++ + PT N L EA
Sbjct: 244 AFAIPMIHAVLQWQVKKKPTPTLGNPGALPSEA 276
>gi|9931363|gb|AAG02170.1|AF214732_1 ATP-dependent RNA helicase [Mus musculus]
Length = 857
Score = 375 bits (962), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/392 (49%), Positives = 267/392 (68%), Gaps = 6/392 (1%)
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 901
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 353 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 412
Query: 902 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVIDE
Sbjct: 413 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDE 472
Query: 962 TDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKV 1019
DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK KK+
Sbjct: 473 ADRMVEKGHFAELSQLLEMLNDSQYNPSRQTLVFSATLTLVHQAPARILHKK---HVKKM 529
Query: 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 1079
K D +Q + PK++DLT + G +TLTE+KI C+ DEKD YLYYF++Q+PGR
Sbjct: 530 DKTDKLDLLMQKVGMRGKPKVIDLTRERGTVETLTETKIHCETDEKDLYLYYFLMQYPGR 589
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAAR
Sbjct: 590 SLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQRLRNLEQFARLQDCVLLATDVAAR 649
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EGL+L+LI +++ + K++ +L+K
Sbjct: 650 GLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKD 709
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 710 EDIPLFPVQSKYMDVVKERIRLARQIEKAEYR 741
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 179/431 (41%), Positives = 243/431 (56%), Gaps = 90/431 (20%)
Query: 226 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 284
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 353 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 412
Query: 285 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVIDE
Sbjct: 413 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDE 472
Query: 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404
DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 473 ADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPSRQTL 504
Query: 405 VFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
VFSAT L H + KK KK+ K D K+ L +K+G+
Sbjct: 505 VFSATLTLVHQAPARILHKK---HVKKMDKTD---------------KLDLLMQKVGMRG 546
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
PK++DLT + G +TLTE
Sbjct: 547 -----------------------------------------KPKVIDLTRERGTVETLTE 565
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+Q
Sbjct: 566 TKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQ 625
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
RL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EG
Sbjct: 626 RLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEG 685
Query: 643 LTVVLIESDEI 653
L+++LI +++
Sbjct: 686 LSLMLIGPEDV 696
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 390 GLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 448
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 187 DQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 246
Query: 205 AFGIPILTGIV--NKLENP 221
AF IP++ ++ +K++ P
Sbjct: 247 AFAIPMIHSVLQWHKMKAP 265
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 187 DQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 246
Query: 822 AFGIPILTGIV--NKLENP 838
AF IP++ ++ +K++ P
Sbjct: 247 AFAIPMIHSVLQWHKMKAP 265
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 671 YIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKDEDIPLFPVQSKYMDVVKERIR 730
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 731 LARQIEKAEYRNFQACLHNSWIEQ 754
>gi|426248528|ref|XP_004018015.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Ovis aries]
Length = 852
Score = 375 bits (962), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/360 (51%), Positives = 252/360 (70%), Gaps = 5/360 (1%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
R L L+L PTRELA+QV+ H+ K+T +K A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 377 RRPLLGLVLTPTRELAVQVKQHVDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIAT 436
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE ++ H HL+ L ++ LVIDE DRM+E GHF EL +L+ ++ + + RQT
Sbjct: 437 PGRLWELVKEKHPHLSNLQQLRCLVIDEADRMVEKGHFAELSQLLEMLSDCQYNPKRQTL 496
Query: 994 VFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H + KK K K +K D +Q + PK++DLT K +
Sbjct: 497 VFSATLTLVHQAPARILHKKHAKKIDKTAKLD---LLMQKIGMRGKPKVIDLTRKEATVE 553
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 554 TLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACM 613
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 614 HQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 673
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
NEGL+L+L+ +++ + K++ +L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 674 TNEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIRLARQIEKAEYR 733
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 171/399 (42%), Positives = 230/399 (57%), Gaps = 89/399 (22%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
R L L+L PTRELA+QV+ H+ K+T +K A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 377 RRPLLGLVLTPTRELAVQVKQHVDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIAT 436
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE ++ H HL+ L ++ LVIDE DRM+E G
Sbjct: 437 PGRLWELVKEKHPHLSNLQQLRCLVIDEADRMVEKG------------------------ 472
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGD 434
HF EL +L+ ++ + + RQT VFSAT L H + KK +KK+ K
Sbjct: 473 ----HFAELSQLLEMLSDCQYNPKRQTLVFSATLTLVHQAPARILHKK---HAKKIDK-- 523
Query: 435 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCE 494
+ K+ L +KIG+
Sbjct: 524 -------------TAKLDLLMQKIGMRG-------------------------------- 538
Query: 495 EIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554
PK++DLT K +TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSI
Sbjct: 539 ---------KPKVIDLTRKEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSI 589
Query: 555 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 614
S +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++
Sbjct: 590 SCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQ 649
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
HVIHY VPRTSEIY+HRSGRTARA NEGL+++L+ +++
Sbjct: 650 HVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLVGPEDV 688
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ H+ K+T +K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 382 GLVLTPTRELAVQVKQHVDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRL 440
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+L+ +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 663 YVHRSGRTARATNEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIR 722
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 723 LARQIEKAEYRNFQACLHNSWIEQ 746
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 205 AFGIPILTGIV 215
AF IP++ ++
Sbjct: 245 AFAIPMIDAVL 255
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 822 AFGIPILTGIV 832
AF IP++ ++
Sbjct: 245 AFAIPMIDAVL 255
>gi|226958385|ref|NP_001152974.1| ATP-dependent RNA helicase DDX24 isoform 1 [Mus musculus]
Length = 903
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/392 (49%), Positives = 266/392 (67%), Gaps = 6/392 (1%)
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 901
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 399 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 458
Query: 902 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVIDE
Sbjct: 459 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDE 518
Query: 962 TDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKV 1019
DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK KK+
Sbjct: 519 ADRMVEKGHFAELSQLLEMLNDSQYNPSRQTLVFSATLTLVHQAPARILHKK---HVKKM 575
Query: 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 1079
K D +Q + PK++DLT G +TLTE+KI C+ DEKD YLYYF++Q+PGR
Sbjct: 576 DKTDKLDLLMQKVGMRGKPKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFLMQYPGR 635
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAAR
Sbjct: 636 SLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQRLRNLEQFARLQDCVLLATDVAAR 695
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EGL+L+LI +++ + K++ +L+K
Sbjct: 696 GLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKD 755
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 756 EDIPLFPVQSKYMDVVKERIRLARQIEKAEYR 787
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 179/431 (41%), Positives = 242/431 (56%), Gaps = 90/431 (20%)
Query: 226 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 284
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 399 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 458
Query: 285 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVIDE
Sbjct: 459 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDE 518
Query: 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404
DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 519 ADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPSRQTL 550
Query: 405 VFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
VFSAT L H + KK KK+ K D K+ L +K+G+
Sbjct: 551 VFSATLTLVHQAPARILHKK---HVKKMDKTD---------------KLDLLMQKVGMRG 592
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
PK++DLT G +TLTE
Sbjct: 593 -----------------------------------------KPKVIDLTRNEGTVETLTE 611
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+Q
Sbjct: 612 TKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQ 671
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
RL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EG
Sbjct: 672 RLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEG 731
Query: 643 LTVVLIESDEI 653
L+++LI +++
Sbjct: 732 LSLMLIGPEDV 742
Score = 74.7 bits (182), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 436 GLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 494
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 233 DQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 292
Query: 205 AFGIPILTGIV--NKLENP 221
AF IP++ ++ +K++ P
Sbjct: 293 AFAIPMIHSVLQWHKMKAP 311
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 233 DQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 292
Query: 822 AFGIPILTGIV--NKLENP 838
AF IP++ ++ +K++ P
Sbjct: 293 AFAIPMIHSVLQWHKMKAP 311
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 717 YIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKDEDIPLFPVQSKYMDVVKERIR 776
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 777 LARQIEKAEYRNFQACLHNSWIEQ 800
>gi|109084685|ref|XP_001097132.1| PREDICTED: ATP-dependent RNA helicase DDX24 isoform 5 [Macaca
mulatta]
Length = 856
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/449 (45%), Positives = 290/449 (64%), Gaps = 18/449 (4%)
Query: 792 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 845
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 300 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 356
Query: 846 SGLE-EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 904
L+ E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 357 ENLDKEQIGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 413
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 414 XXXXXLVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 473
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG 1022
M+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K +K
Sbjct: 474 MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKL 533
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082
D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LV
Sbjct: 534 D---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLV 590
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLD
Sbjct: 591 FANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLD 650
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
IP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+
Sbjct: 651 IPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDI 710
Query: 1203 PDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
P FP+ + ++K+RI LA+ IE E +
Sbjct: 711 PLFPVQTKYMDVVKERIRLARQIEKSEYR 739
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 189/488 (38%), Positives = 264/488 (54%), Gaps = 102/488 (20%)
Query: 175 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 228
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 300 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 356
Query: 229 SGLE-EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 287
L+ E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 357 ENLDKEQIGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 413
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 414 XXXXXLVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 473
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
M+E G HF EL +L+ + ++ + RQT VFS
Sbjct: 474 MVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQTLVFS 505
Query: 408 AT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
AT L H + KK K K + K+ L +KIG+
Sbjct: 506 ATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMRG--- 544
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI 525
PK++DLT +TLTE+KI
Sbjct: 545 --------------------------------------KPKVIDLTRNEATVETLTETKI 566
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+
Sbjct: 567 HCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLR 626
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL++
Sbjct: 627 NLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSL 686
Query: 646 VLIESDEI 653
+LI +++
Sbjct: 687 MLIGPEDV 694
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 669 YVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 728
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 729 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 764
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTL 243
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 244 AFAIPVIHAVLQ 255
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDRLDILGAAETGSGKTL 243
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 244 AFAIPVIHAVLQ 255
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +VGGMST+KQ R+L++ P I+VATPG L
Sbjct: 388 GLVLTPTRELAVQVKQHIDAVARFTGXXXXXLVGGMSTQKQQRMLSRRPEIVVATPGRL 446
>gi|297298507|ref|XP_002805221.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Macaca mulatta]
Length = 770
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/464 (44%), Positives = 297/464 (64%), Gaps = 19/464 (4%)
Query: 792 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 845
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 214 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 270
Query: 846 SGLE-EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 904
L+ E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 271 ENLDKEQIGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 327
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 328 XXXXXLVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 387
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG 1022
M+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K +K
Sbjct: 388 MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKL 447
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082
D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LV
Sbjct: 448 D---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLV 504
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLD
Sbjct: 505 FANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLD 564
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
IP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+
Sbjct: 565 IPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDI 624
Query: 1203 PDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSG 1245
P FP+ + ++K+RI LA+ IE E + + ++W+ ++
Sbjct: 625 PLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 668
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 189/488 (38%), Positives = 264/488 (54%), Gaps = 102/488 (20%)
Query: 175 TKIQSMVMPS--ALLARKDIVGAAETGSGKTLAFGIPIL----TGIVNKLENPTEEDEND 228
T I+S +PS A AR G TGS + L FG + ++ + P + + +
Sbjct: 214 TIIESEALPSDTAAEARAKTGG---TGSDQALLFGDDDAGEGPSSLIREKPVPKQNENEE 270
Query: 229 SGLE-EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 287
L+ E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI ++T
Sbjct: 271 ENLDKEQIGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVARFTG 327
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+VGGMST+KQ R+L++ P I+VATPGRLWE I+ H+HL L ++ LV+DE DR
Sbjct: 328 XXXXXLVGGMSTQKQQRMLSRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADR 387
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
M+E G HF EL +L+ + ++ + RQT VFS
Sbjct: 388 MVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQTLVFS 419
Query: 408 AT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
AT L H + KK K K + K+ L +KIG+
Sbjct: 420 ATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMRG--- 458
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI 525
PK++DLT +TLTE+KI
Sbjct: 459 --------------------------------------KPKVIDLTRNEATVETLTETKI 480
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+
Sbjct: 481 HCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLR 540
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL++
Sbjct: 541 NLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARAANEGLSL 600
Query: 646 VLIESDEI 653
+LI +++
Sbjct: 601 MLIGPEDV 608
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 583 YVHRSGRTARAANEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 642
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 643 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 678
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +VGGMST+KQ R+L++ P I+VATPG L
Sbjct: 302 GLVLTPTRELAVQVKQHIDAVARFTGXXXXXLVGGMSTQKQQRMLSRRPEIVVATPGRL 360
Score = 47.8 bits (112), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 179 SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
S+ + A+ R DI+GAAETGSGKTLAF IP++ ++
Sbjct: 132 SLTLAPAIRDRLDILGAAETGSGKTLAFAIPVIHAVLQ 169
Score = 47.8 bits (112), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 796 SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
S+ + A+ R DI+GAAETGSGKTLAF IP++ ++
Sbjct: 132 SLTLAPAIRDRLDILGAAETGSGKTLAFAIPVIHAVLQ 169
>gi|34328253|ref|NP_065240.2| ATP-dependent RNA helicase DDX24 isoform 2 [Mus musculus]
gi|341940454|sp|Q9ESV0.2|DDX24_MOUSE RecName: Full=ATP-dependent RNA helicase DDX24; AltName: Full=DEAD
box protein 24
gi|32967660|gb|AAH55048.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Mus musculus]
gi|33244019|gb|AAH55317.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Mus musculus]
gi|148686888|gb|EDL18835.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, isoform CRA_b [Mus
musculus]
Length = 857
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/392 (49%), Positives = 266/392 (67%), Gaps = 6/392 (1%)
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 901
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 353 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 412
Query: 902 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVIDE
Sbjct: 413 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDE 472
Query: 962 TDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKV 1019
DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK KK+
Sbjct: 473 ADRMVEKGHFAELSQLLEMLNDSQYNPSRQTLVFSATLTLVHQAPARILHKK---HVKKM 529
Query: 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 1079
K D +Q + PK++DLT G +TLTE+KI C+ DEKD YLYYF++Q+PGR
Sbjct: 530 DKTDKLDLLMQKVGMRGKPKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFLMQYPGR 589
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAAR
Sbjct: 590 SLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQRLRNLEQFARLQDCVLLATDVAAR 649
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EGL+L+LI +++ + K++ +L+K
Sbjct: 650 GLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKD 709
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 710 EDIPLFPVQSKYMDVVKERIRLARQIEKAEYR 741
Score = 310 bits (793), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 179/431 (41%), Positives = 242/431 (56%), Gaps = 90/431 (20%)
Query: 226 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 284
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 353 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 412
Query: 285 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVIDE
Sbjct: 413 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDE 472
Query: 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404
DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 473 ADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPSRQTL 504
Query: 405 VFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
VFSAT L H + KK KK+ K D K+ L +K+G+
Sbjct: 505 VFSATLTLVHQAPARILHKK---HVKKMDKTD---------------KLDLLMQKVGMRG 546
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
PK++DLT G +TLTE
Sbjct: 547 -----------------------------------------KPKVIDLTRNEGTVETLTE 565
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+Q
Sbjct: 566 TKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQ 625
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
RL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EG
Sbjct: 626 RLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEG 685
Query: 643 LTVVLIESDEI 653
L+++LI +++
Sbjct: 686 LSLMLIGPEDV 696
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 390 GLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 448
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 187 DQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 246
Query: 205 AFGIPILTGIV--NKLENP 221
AF IP++ ++ +K++ P
Sbjct: 247 AFAIPMIHSVLQWHKMKAP 265
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 187 DQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 246
Query: 822 AFGIPILTGIV--NKLENP 838
AF IP++ ++ +K++ P
Sbjct: 247 AFAIPMIHSVLQWHKMKAP 265
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 671 YIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKDEDIPLFPVQSKYMDVVKERIR 730
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 731 LARQIEKAEYRNFQACLHNSWIEQ 754
>gi|302781030|ref|XP_002972289.1| hypothetical protein SELMODRAFT_97519 [Selaginella moellendorffii]
gi|300159756|gb|EFJ26375.1| hypothetical protein SELMODRAFT_97519 [Selaginella moellendorffii]
Length = 524
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/494 (41%), Positives = 290/494 (58%), Gaps = 45/494 (9%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + +++ AL GF TPT IQ +P+A KD++GAAETGSGKTLAFGIPIL
Sbjct: 1 WNELRLHPSLLTALSTLGFTTPTPIQKACIPAAAHKGKDVIGAAETGSGKTLAFGIPILQ 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ DE D L + N + + L ALI+ PTRELA
Sbjct: 61 RLL---------DERDKLLRQN-------------NVA-----SDSPLRALIVTPTRELA 93
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q+ +HI K+T +KVA +VGG+ST+KQ R+L + P I+V TPGRLWE + G HL
Sbjct: 94 LQICDHIRAVAKFTDIKVAPIVGGISTQKQERLLKRRPAIVVGTPGRLWELMSSGESHLV 153
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRV---------------TMTETSQPRQTFV 994
+L +I++ ++DE DRMIE GHF EL++I+D + + RQT V
Sbjct: 154 QLQEISFFILDEADRMIEKGHFQELESIIDLLPKHGEPREDLDPADNVFLSAKKRRQTLV 213
Query: 995 FSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 1054
FSATLT LKK KK + S+ + L+ + ++VDLT K + + LT
Sbjct: 214 FSATLTLPPDFKKKLKKSYGARKKSEQHSLSLLSERAGLS-DTAEVVDLTSKNVVAEKLT 272
Query: 1055 ESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
ES I C +EKD+YLYY + H GRT+VFC SI++++RL +L +L+ PLHA + Q
Sbjct: 273 ESVIECTDEEKDAYLYYVLKVHGCGRTIVFCTSIAALRRLAAILRLLEVPAWPLHAQLQQ 332
Query: 1114 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
RQRLK +DRFR + +L+ATDVAARGLDIPG+ VIHY +P ++E+Y+HRSGRTARA+
Sbjct: 333 RQRLKTMDRFRASTDGVLVATDVAARGLDIPGVRTVIHYQLPHSAEMYVHRSGRTARADK 392
Query: 1174 EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIE-YLESKI 1232
+G ++ LI E Y+ + +L K L FPI+ + ++KRI LA I+ L
Sbjct: 393 DGCSIALISPSEKSKYLTLCRALSKSSGLTSFPINSGYIPSVEKRIGLALRIDRLLRENS 452
Query: 1233 KKNRPDNWLHRSGR 1246
KK W R+ +
Sbjct: 453 KKKAKSTWFERNAK 466
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 196/501 (39%), Positives = 277/501 (55%), Gaps = 98/501 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + + +++ AL GF TPT IQ +P+A KD++GAAETGSGKTLAFGIPIL
Sbjct: 1 WNELRLHPSLLTALSTLGFTTPTPIQKACIPAAAHKGKDVIGAAETGSGKTLAFGIPILQ 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ DE D L + N + + L ALI+ PTRELA
Sbjct: 61 RLL---------DERDKLLRQN-------------NVA-----SDSPLRALIVTPTRELA 93
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q+ +HI K+T +KVA +VGG+ST+KQ R+L + P I+V TPGRLWE + G HL
Sbjct: 94 LQICDHIRAVAKFTDIKVAPIVGGISTQKQERLLKRRPAIVVGTPGRLWELMSSGESHLV 153
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L +I++ ++DE DRMIE GHF EL++I+D + + +PR+ + + D V
Sbjct: 154 QLQEISFFILDEADRMIEKGHFQELESIID--LLPKHGEPREDL----------DPADNV 201
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
++ + RQT VFSATLT LKK KK + S+
Sbjct: 202 FLSAKKR-RQTLVFSATLTLPPDFKKKLKKSYGARKKSEQHSLSL--------------- 245
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
L+E+ G++ T ++VDLT
Sbjct: 246 -LSERAGLSDT-----------------------------------------AEVVDLTS 263
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSP 571
K + + LTES I C +EKD+YLYY + H GRT+VFC SI++++RL +L +L+
Sbjct: 264 KNVVAEKLTESVIECTDEEKDAYLYYVLKVHGCGRTIVFCTSIAALRRLAAILRLLEVPA 323
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
PLHA + QRQRLK +DRFR + +L+ATDVAARGLDIPG+ VIHY +P ++E+Y+HR
Sbjct: 324 WPLHAQLQQRQRLKTMDRFRASTDGVLVATDVAARGLDIPGVRTVIHYQLPHSAEMYVHR 383
Query: 632 SGRTARANNEGLTVVLIESDE 652
SGRTARA+ +G ++ LI E
Sbjct: 384 SGRTARADKDGCSIALISPSE 404
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+Q+ +HI K+T +KVA +VGG+ST+KQ R+L + P I+V TPG L
Sbjct: 83 ALIVTPTRELALQICDHIRAVAKFTDIKVAPIVGGISTQKQERLLKRRPAIVVGTPGRL 141
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA+ +G ++ LI E Y+ + +L K L FPI+ + ++KRI
Sbjct: 380 YVHRSGRTARADKDGCSIALISPSEKSKYLTLCRALSKSSGLTSFPINSGYIPSVEKRIG 439
Query: 1300 LAKSIE-YLESKIKKNRPDNWLEKAAKDMDIIIDDEN 1335
LA I+ L KK W E+ AK++DI I+ ++
Sbjct: 440 LALRIDRLLRENSKKKAKSTWFERNAKELDIEIERKD 476
>gi|148686887|gb|EDL18834.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, isoform CRA_a [Mus
musculus]
Length = 943
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/402 (48%), Positives = 269/402 (66%), Gaps = 6/402 (1%)
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQ 891
+ LE +N+ G E+ E +L++E + K R L L+L PTRELAIQ
Sbjct: 429 SSLEEKPVPKQNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQ 488
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
V+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L
Sbjct: 489 VRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNL 548
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNL 1009
++ LVIDE DRM+E GHF EL +L+ + ++ + RQT VFSATLT H +
Sbjct: 549 RQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPSRQTLVFSATLTLVHQAPARILH 608
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
KK KK+ K D +Q + PK++DLT G +TLTE+KI C+ DEKD YL
Sbjct: 609 KK---HVKKMDKTDKLDLLMQKVGMRGKPKVIDLTRNEGTVETLTETKIHCETDEKDLYL 665
Query: 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129
YYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F +
Sbjct: 666 YYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQRLRNLEQFARLQDC 725
Query: 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLY 1189
+LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EGL+L+LI +++ +
Sbjct: 726 VLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINF 785
Query: 1190 IKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
K++ +L+K D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 786 KKIYKTLQKDEDIPLFPVQSKYMDVVKERIRLARQIEKAEYR 827
Score = 309 bits (792), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 181/441 (41%), Positives = 245/441 (55%), Gaps = 90/441 (20%)
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQ 274
+ LE +N+ G E+ E +L++E + K R L L+L PTRELAIQ
Sbjct: 429 SSLEEKPVPKQNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQ 488
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
V+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L
Sbjct: 489 VRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNL 548
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
++ LVIDE DRM+E G HF EL +L+ +
Sbjct: 549 RQLRCLVIDEADRMVEKG----------------------------HFAELSQLLEMLND 580
Query: 395 TETSQPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
++ + RQT VFSAT L H + KK KK+ K D K+
Sbjct: 581 SQYNPSRQTLVFSATLTLVHQAPARILHKK---HVKKMDKTD---------------KLD 622
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
L +K+G+ PK++DLT
Sbjct: 623 LLMQKVGMRG-----------------------------------------KPKVIDLTR 641
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
G +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL
Sbjct: 642 NEGTVETLTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPL 701
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRS
Sbjct: 702 TLHACMHQKQRLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRS 761
Query: 633 GRTARANNEGLTVVLIESDEI 653
GRTARA +EGL+++LI +++
Sbjct: 762 GRTARAASEGLSLMLIGPEDV 782
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 476 GLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 534
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 273 DQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 332
Query: 205 AFGIPILTGIV--NKLENP 221
AF IP++ ++ +K++ P
Sbjct: 333 AFAIPMIHSVLQWHKMKAP 351
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 273 DQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 332
Query: 822 AFGIPILTGIV--NKLENP 838
AF IP++ ++ +K++ P
Sbjct: 333 AFAIPMIHSVLQWHKMKAP 351
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 757 YIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKDEDIPLFPVQSKYMDVVKERIR 816
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 817 LARQIEKAEYRNFQACLHNSWIEQ 840
>gi|354489656|ref|XP_003506977.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Cricetulus griseus]
gi|344257276|gb|EGW13380.1| ATP-dependent RNA helicase DDX24 [Cricetulus griseus]
Length = 853
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/397 (48%), Positives = 271/397 (68%), Gaps = 9/397 (2%)
Query: 838 PTEEDENDSGL-EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
P ++D+ + L EE+A ++ + L + A + R L L+L PTRELA+QV+ HI
Sbjct: 346 PKQDDDREEKLDEEQAGKLKQGLCDRIAI---YRVHPRRPLLGLVLTPTRELAVQVRQHI 402
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
K+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++
Sbjct: 403 DAVAKFTGIKTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRC 462
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQS 1014
LVIDE DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + + KK
Sbjct: 463 LVIDEADRMVEKGHFAELSQLLEMLNDSQYNPNRQTLVFSATLTLVHQVPARILHKKHVK 522
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K +K D +Q + PK++DLT G +TLTE+KI C+ DEKD YLYYF++
Sbjct: 523 KMDKTTKLD---LLMQKIGMRGKPKVIDLTRNEGTVETLTETKIHCETDEKDWYLYYFLM 579
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLAT
Sbjct: 580 QYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLAT 639
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA EGL+L+LI +++ + K++
Sbjct: 640 DVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARATREGLSLMLIGPEDVINFKKIYK 699
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+L+K D+P FP+ + ++K+RI LA+ +E E +
Sbjct: 700 TLKKDEDIPLFPVQAKYMDVVKERIRLARQVEKAEYR 736
Score = 311 bits (798), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 182/436 (41%), Positives = 248/436 (56%), Gaps = 93/436 (21%)
Query: 221 PTEEDENDSGL-EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
P ++D+ + L EE+A ++ + L + A + R L L+L PTRELA+QV+ HI
Sbjct: 346 PKQDDDREEKLDEEQAGKLKQGLCDRIAI---YRVHPRRPLLGLVLTPTRELAVQVRQHI 402
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
K+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++
Sbjct: 403 DAVAKFTGIKTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRC 462
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399
LVIDE DRM+E G HF EL +L+ + ++ +
Sbjct: 463 LVIDEADRMVEKG----------------------------HFAELSQLLEMLNDSQYNP 494
Query: 400 PRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
RQT VFSATLT H + + KK V K D K+ K+ L +K
Sbjct: 495 NRQTLVFSATLTLVHQVPARILHKK------HVKKMD------------KTTKLDLLMQK 536
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
IG+ PK++DLT G
Sbjct: 537 IGMRG-----------------------------------------KPKVIDLTRNEGTV 555
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA
Sbjct: 556 ETLTETKIHCETDEKDWYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHAC 615
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTAR
Sbjct: 616 MHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTAR 675
Query: 638 ANNEGLTVVLIESDEI 653
A EGL+++LI +++
Sbjct: 676 ATREGLSLMLIGPEDV 691
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 385 GLVLTPTRELAVQVRQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 443
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 666 YIHRSGRTARATREGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQAKYMDVVKERIR 725
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ +E E + + ++W+E+AA ++I ++++
Sbjct: 726 LARQVEKAEYRNFQACLHNSWIEQAAAALEIELEED 761
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
+D ++ W +P+ ++RAL GF PT IQ++ +P A+ + DI+GAAETGSGKT
Sbjct: 188 QDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLPPAIRDKLDILGAAETGSGKT 247
Query: 204 LAFGIPILTGIVN 216
LAF IP++ ++
Sbjct: 248 LAFAIPMIHAVLQ 260
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
+D ++ W +P+ ++RAL GF PT IQ++ +P A+ + DI+GAAETGSGKT
Sbjct: 188 QDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLPPAIRDKLDILGAAETGSGKT 247
Query: 821 LAFGIPILTGIVN 833
LAF IP++ ++
Sbjct: 248 LAFAIPMIHAVLQ 260
>gi|74147720|dbj|BAE38731.1| unnamed protein product [Mus musculus]
Length = 792
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/392 (49%), Positives = 266/392 (67%), Gaps = 6/392 (1%)
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 901
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 354 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 413
Query: 902 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVIDE
Sbjct: 414 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDE 473
Query: 962 TDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKV 1019
DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK KK+
Sbjct: 474 ADRMVEKGHFAELSQLLEMLNDSQYNPSRQTLVFSATLTLVHQAPARILHKK---HVKKM 530
Query: 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 1079
K D +Q + PK++DLT G +TLTE+KI C+ DEKD YLYYF++Q+PGR
Sbjct: 531 DKTDKLDLLMQKVGMRGKPKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFLMQYPGR 590
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAAR
Sbjct: 591 SLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQRLRNLEQFARLQDCVLLATDVAAR 650
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EGL+L+LI +++ + K++ +L+K
Sbjct: 651 GLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLKKD 710
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 711 EDIPLFPVQSKYMDVVKERIRLARQIEKAEYR 742
Score = 309 bits (792), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 179/431 (41%), Positives = 242/431 (56%), Gaps = 90/431 (20%)
Query: 226 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 284
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 354 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 413
Query: 285 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVIDE
Sbjct: 414 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDE 473
Query: 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404
DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 474 ADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPSRQTL 505
Query: 405 VFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
VFSAT L H + KK KK+ K D K+ L +K+G+
Sbjct: 506 VFSATLTLVHQAPARILHKK---HVKKMDKTD---------------KLDLLMQKVGMRG 547
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
PK++DLT G +TLTE
Sbjct: 548 -----------------------------------------KPKVIDLTRNEGTVETLTE 566
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+Q
Sbjct: 567 TKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQ 626
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
RL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EG
Sbjct: 627 RLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEG 686
Query: 643 LTVVLIESDEI 653
L+++LI +++
Sbjct: 687 LSLMLIGPEDV 697
Score = 74.7 bits (182), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 391 GLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 449
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 187 DQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 246
Query: 205 AFGIPILTGIV--NKLENP 221
AF IP++ ++ +K++ P
Sbjct: 247 AFAIPMIHSVLQWHKMKAP 265
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 672 YIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQSKYMDVVKERIR 731
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 732 LARQIEKAEYRNFQACLHNSWIEQ 755
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 10/151 (6%)
Query: 698 QNPSQVEVSELSAN---TNDPDDQVN--KTEEIQSDEPHSKKLKQKKK---KKQTYTSAN 749
QN +V+ SE A T D +V K+E + P KK K KKK + T
Sbjct: 115 QNEYEVKASEPEAQGEVTACSDQKVGGAKSESLAQAAPRKKKNKGKKKLDTFQSTSPKLP 174
Query: 750 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
K+ + + D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI
Sbjct: 175 KKSKKTWMAEVHDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 234
Query: 810 VGAAETGSGKTLAFGIPILTGIV--NKLENP 838
+GAAETGSGKTLAF IP++ ++ +K++ P
Sbjct: 235 LGAAETGSGKTLAFAIPMIHSVLQWHKMKAP 265
>gi|351698834|gb|EHB01753.1| ATP-dependent RNA helicase DDX24 [Heterocephalus glaber]
Length = 989
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/393 (49%), Positives = 269/393 (68%), Gaps = 8/393 (2%)
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
EDE + E E+ +EL+++ A + + L L+L PTRELA+QV+ HI
Sbjct: 355 EDEEEMLDGELTGELKQELDDKIAT---YKTHPKRPLLGLVLTPTRELAVQVKQHIDAVA 411
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
K+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LV+D
Sbjct: 412 KFTGIKTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHSHLSNLRQLRCLVVD 471
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ ++ ++ + RQT VFSATLT H L KK K K
Sbjct: 472 EADRMVEKGHFAELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPARLLHKKHVKKMDK 531
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT G +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 532 TAKLD---LLMQKIGMRGKPKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFLMQYPG 588
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 589 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 648
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EGL+L+LI +++ + K++ +L+K
Sbjct: 649 RGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARATSEGLSLMLIGPEDVVNFKKIYRTLKK 708
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 709 DEDIPLFPVQTKYMDVVKERIRLARQIEKAEYR 741
Score = 311 bits (796), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 181/432 (41%), Positives = 246/432 (56%), Gaps = 92/432 (21%)
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
EDE + E E+ +EL+++ A + + L L+L PTRELA+QV+ HI
Sbjct: 355 EDEEEMLDGELTGELKQELDDKIAT---YKTHPKRPLLGLVLTPTRELAVQVKQHIDAVA 411
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
K+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LV+D
Sbjct: 412 KFTGIKTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHSHLSNLRQLRCLVVD 471
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ ++ ++ + RQT
Sbjct: 472 EADRMVEKG----------------------------HFAELSQLLEMLSDSQYNPKRQT 503
Query: 404 FVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSATLT H L KK V K D K+ K+ L +KIG+
Sbjct: 504 LVFSATLTLVHQAPARLLHKK------HVKKMD------------KTAKLDLLMQKIGMR 545
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT G +TLT
Sbjct: 546 G-----------------------------------------KPKVIDLTRNEGTVETLT 564
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 565 ETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 624
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA +E
Sbjct: 625 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARATSE 684
Query: 642 GLTVVLIESDEI 653
GL+++LI +++
Sbjct: 685 GLSLMLIGPEDV 696
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 390 GLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 448
Score = 70.9 bits (172), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 11/102 (10%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLVPAIRDRLDILGAAETGSGKTL 245
Query: 205 AFGIPILTGIVNKLEN-----------PTEEDENDSGLEEEA 235
AF IP++ ++ + P+ E + ++G E E+
Sbjct: 246 AFAIPMIHAVLQWQKKKPLPIPGNAGVPSGETQTEAGAETES 287
Score = 70.9 bits (172), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 11/102 (10%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ R DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLVPAIRDRLDILGAAETGSGKTL 245
Query: 822 AFGIPILTGIVNKLEN-----------PTEEDENDSGLEEEA 852
AF IP++ ++ + P+ E + ++G E E+
Sbjct: 246 AFAIPMIHAVLQWQKKKPLPIPGNAGVPSGETQTEAGAETES 287
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 671 YIHRSGRTARATSEGLSLMLIGPEDVVNFKKIYRTLKKDEDIPLFPVQTKYMDVVKERIR 730
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 731 LARQIEKAEYRNFQACLHNSWIEQ 754
>gi|149737471|ref|XP_001498017.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Equus caballus]
Length = 857
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/360 (51%), Positives = 255/360 (70%), Gaps = 5/360 (1%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 384 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVVAT 443
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE ++ H HL+ L ++ LV+DE DRM+E GHF EL +L+ ++ ++ + RQT
Sbjct: 444 PGRLWELVKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLSDSQYNPKRQTL 503
Query: 994 VFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H + KK K K +K D ++++ L K PK++DLT +
Sbjct: 504 VFSATLTLVHQAPARILHKKHTKKIDKTAKLDLLMQKIG--LRGK-PKVIDLTRNEATVE 560
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 561 TLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACM 620
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 621 HQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 680
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
NEGL+L+LI +++ + K++ +L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 681 TNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIHLARQIEKAEYR 740
Score = 310 bits (793), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 171/399 (42%), Positives = 230/399 (57%), Gaps = 89/399 (22%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 384 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVVAT 443
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE ++ H HL+ L ++ LV+DE DRM+E G
Sbjct: 444 PGRLWELVKEKHPHLSNLRQLRCLVVDEADRMVEKG------------------------ 479
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGD 434
HF EL +L+ ++ ++ + RQT VFSAT L H + KK +KK+ K
Sbjct: 480 ----HFAELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPARILHKK---HTKKIDK-- 530
Query: 435 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCE 494
+ K+ L +KIG+
Sbjct: 531 -------------TAKLDLLMQKIGLRG-------------------------------- 545
Query: 495 EIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSI
Sbjct: 546 ---------KPKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSI 596
Query: 555 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 614
S +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++
Sbjct: 597 SCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQ 656
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
HVIHY VPRTSEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 657 HVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDV 695
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 389 GLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVVATPGRL 447
Score = 70.5 bits (171), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 670 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIH 729
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 730 LARQIEKAEYRNFQACLHNSWIEQ 753
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 184 DQKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 243
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 244 AFAIPMIHAVLQ 255
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 23/183 (12%)
Query: 54 EEAEADKEKTEGINVTVSSKKKKLKRKQN----------PSQVEVSELSA---NTNDPDD 100
+A+A E E + S KK KLK+ ++ +V+ +E A T PD
Sbjct: 76 RKAQALSEGEEEAEASCSKKKMKLKKGKDVETEGTSTREECEVKDAEPEAQGDGTGCPDP 135
Query: 101 QVNKTEEIQSDEPSS-------KKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEW 153
+V E+ S+ P+ KK K+K + Q T + + D ++ W
Sbjct: 136 EVG---EMASESPAQTIPKKKKKKGKKKMEASQGTTPKGPKKAKTWMPEMRDQKADVSAW 192
Query: 154 VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 213
+P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTLAF IP++
Sbjct: 193 KDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMIHA 252
Query: 214 IVN 216
++
Sbjct: 253 VLQ 255
>gi|335292920|ref|XP_003356831.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Sus scrofa]
Length = 856
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/397 (48%), Positives = 269/397 (67%), Gaps = 9/397 (2%)
Query: 838 PTEEDENDSGLEEE-AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
P +++ + L+EE + E+ +EL + A + K+ L L+L PTRELA+QV+ HI
Sbjct: 348 PKQDENKEEKLDEEHSGELKQELNSKIATSEAHPKRP---LLGLVLTPTRELAVQVKQHI 404
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
K+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ HL+ L ++
Sbjct: 405 DAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKQPHLSNLRQLRC 464
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQS 1014
LVIDE DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK
Sbjct: 465 LVIDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHAK 524
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K +K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++
Sbjct: 525 KIDKTAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLM 581
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLAT
Sbjct: 582 QYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLAT 641
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+L+ +++ + K++
Sbjct: 642 DVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLVGPEDVINFKKIYK 701
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 702 TLKKDEDIPLFPVQTKYMDAVKERIRLARQIEKAEYR 738
Score = 309 bits (792), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 178/436 (40%), Positives = 247/436 (56%), Gaps = 93/436 (21%)
Query: 221 PTEEDENDSGLEEE-AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
P +++ + L+EE + E+ +EL + A + K+ L L+L PTRELA+QV+ HI
Sbjct: 348 PKQDENKEEKLDEEHSGELKQELNSKIATSEAHPKRP---LLGLVLTPTRELAVQVKQHI 404
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
K+T +K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ HL+ L ++
Sbjct: 405 DAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKQPHLSNLRQLRC 464
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399
LVIDE DRM+E G HF EL +L+ + ++ +
Sbjct: 465 LVIDEADRMVEKG----------------------------HFAELSQLLEMLNDSQYNP 496
Query: 400 PRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
RQT VFSAT L H + KK +KK+ K + K+ L +K
Sbjct: 497 KRQTLVFSATLTLVHQAPARILHKK---HAKKIDK---------------TAKLDLLMQK 538
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
IG+ PK++DLT
Sbjct: 539 IGMRG-----------------------------------------KPKVIDLTRNEATV 557
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA
Sbjct: 558 ETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHAC 617
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTAR
Sbjct: 618 MHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTAR 677
Query: 638 ANNEGLTVVLIESDEI 653
A NEGL+++L+ +++
Sbjct: 678 ATNEGLSLMLVGPEDV 693
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 387 GLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRL 445
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 205 AFGIPIL------------TGIVNKLENPTEEDENDSGLE 232
AF IP++ T +++ P EE + G E
Sbjct: 245 AFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAE 284
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 822 AFGIPIL------------TGIVNKLENPTEEDENDSGLE 849
AF IP++ T +++ P EE + G E
Sbjct: 245 AFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAE 284
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+L+ +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 668 YVHRSGRTARATNEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIR 727
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 728 LARQIEKAEYRNFQACLHNSWIEQ 751
>gi|302804899|ref|XP_002984201.1| hypothetical protein SELMODRAFT_119748 [Selaginella moellendorffii]
gi|300148050|gb|EFJ14711.1| hypothetical protein SELMODRAFT_119748 [Selaginella moellendorffii]
Length = 521
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 209/495 (42%), Positives = 292/495 (58%), Gaps = 46/495 (9%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + +++RAL GF TPT IQ +P+A KD++GAAETGSGKTLAFGIPIL
Sbjct: 1 WNELRLHPSLLRALSILGFTTPTPIQKACIPAAAHKGKDVIGAAETGSGKTLAFGIPILQ 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ DE D L + N + + L ALI+ PTRELA
Sbjct: 61 RLL---------DERDKLLRQN-------------NVA-----SDSPLRALIVTPTRELA 93
Query: 890 IQV-QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
+QV +HI K+T +KVA +VGG+ST+KQ R+L + P I+V TPGRLWE + G HL
Sbjct: 94 LQVICDHIRAVAKFTDIKVAPIVGGISTQKQERLLKRRPAIVVGTPGRLWELMSSGESHL 153
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRV---------------TMTETSQPRQTF 993
+L +I++ ++DE DRMIE GHF EL++I+D + + RQT
Sbjct: 154 VQLQEISFFILDEADRMIEKGHFQELESIIDLLPKHGESREDLDPADNVFLSAKKRRQTL 213
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 1053
VFSATLT LKK KK + S+ + L+ + ++VDLT K + + L
Sbjct: 214 VFSATLTLPPDFKKKLKKSYGARKKSEQHSLSLLSERAGLS-DTAEVVDLTSKNVVAEKL 272
Query: 1054 TESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
TES I C +EKD+YLYY + H GRT+VFC SI++++RL +L +L+ PLHA +
Sbjct: 273 TESVIECTDEEKDAYLYYVLKVHGCGRTIVFCTSIAALRRLAAILRLLEVPAWPLHAQLQ 332
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
QRQRLK +DRFR + +L+ATDVAARGLDIPG+ VIHY +P ++E+Y+HRSGRTARA+
Sbjct: 333 QRQRLKTMDRFRASTDGVLVATDVAARGLDIPGVRTVIHYQLPHSAEMYVHRSGRTARAD 392
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIE-YLESK 1231
+G ++ LI E Y+ + +L K L FPI+ + ++KRI+LA I+ L
Sbjct: 393 KDGCSIALISPSEKSKYLTLCRALSKSSGLTRFPINSGYIPSVEKRIELALRIDRLLREN 452
Query: 1232 IKKNRPDNWLHRSGR 1246
KK W R+ +
Sbjct: 453 SKKKAKSTWFERNAK 467
Score = 333 bits (854), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 198/502 (39%), Positives = 275/502 (54%), Gaps = 99/502 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + + +++RAL GF TPT IQ +P+A KD++GAAETGSGKTLAFGIPIL
Sbjct: 1 WNELRLHPSLLRALSILGFTTPTPIQKACIPAAAHKGKDVIGAAETGSGKTLAFGIPILQ 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ DE D L + N + + L ALI+ PTRELA
Sbjct: 61 RLL---------DERDKLLRQN-------------NVA-----SDSPLRALIVTPTRELA 93
Query: 273 IQV-QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
+QV +HI K+T +KVA +VGG+ST+KQ R+L + P I+V TPGRLWE + G HL
Sbjct: 94 LQVICDHIRAVAKFTDIKVAPIVGGISTQKQERLLKRRPAIVVGTPGRLWELMSSGESHL 153
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+L +I++ ++DE DRMIE GHF EL++I+D + + G E + D
Sbjct: 154 VQLQEISFFILDEADRMIEKGHFQELESIID------------LLPKHGESREDLDPADN 201
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
V ++ + RQT VFSATLT LKK KK + S+
Sbjct: 202 VFLSAKKR-RQTLVFSATLTLPPDFKKKLKKSYGARKKSEQHSLSL-------------- 246
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
L+E+ G++ T ++VDLT
Sbjct: 247 --LSERAGLSDT-----------------------------------------AEVVDLT 263
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCS 570
K + + LTES I C +EKD+YLYY + H GRT+VFC SI++++RL +L +L+
Sbjct: 264 SKNVVAEKLTESVIECTDEEKDAYLYYVLKVHGCGRTIVFCTSIAALRRLAAILRLLEVP 323
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
PLHA + QRQRLK +DRFR + +L+ATDVAARGLDIPG+ VIHY +P ++E+Y+H
Sbjct: 324 AWPLHAQLQQRQRLKTMDRFRASTDGVLVATDVAARGLDIPGVRTVIHYQLPHSAEMYVH 383
Query: 631 RSGRTARANNEGLTVVLIESDE 652
RSGRTARA+ +G ++ LI E
Sbjct: 384 RSGRTARADKDGCSIALISPSE 405
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA+ +G ++ LI E Y+ + +L K L FPI+ + ++KRI+
Sbjct: 381 YVHRSGRTARADKDGCSIALISPSEKSKYLTLCRALSKSSGLTRFPINSGYIPSVEKRIE 440
Query: 1300 LAKSIE-YLESKIKKNRPDNWLEKAAKDMDIIIDDEN 1335
LA I+ L KK W E+ AK++DI I+ ++
Sbjct: 441 LALRIDRLLRENSKKKAKSTWFERNAKELDIEIERKD 477
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 1356 ALILAPTRELAIQV-QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV +HI K+T +KVA +VGG+ST+KQ R+L + P I+V TPG L
Sbjct: 83 ALIVTPTRELALQVICDHIRAVAKFTDIKVAPIVGGISTQKQERLLKRRPAIVVGTPGRL 142
>gi|353235877|emb|CCA67883.1| related to MAK5-ATP-dependent RNA helicase [Piriformospora indica DSM
11827]
Length = 703
Score = 372 bits (955), Expect = e-99, Method: Compositional matrix adjust.
Identities = 207/509 (40%), Positives = 300/509 (58%), Gaps = 69/509 (13%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ EW + T++R + +GF PT IQ +P + R D++G A+TGSGKTLAF +P
Sbjct: 124 LPEWSNLGLSPTLLRRIKDQGFIKPTPIQRETLPLSTSGR-DVIGIAQTGSGKTLAFALP 182
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL I+ S N + +++ + L ALI+APTR
Sbjct: 183 ILRHIL------------------------------STNRLKSLRRQKRNLKALIVAPTR 212
Query: 887 ELAIQVQNHI-----------LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
ELA+QV HI ++A V VA +VGGMS +KQ R+L + ++VATPG
Sbjct: 213 ELALQVSAHINACAPQRSKEEIEAHLPPLVSVATIVGGMSQQKQTRMLERGADVIVATPG 272
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM------------ 983
RLWE + T++ ++ + V+DE DRM+E+GHF EL I+ R+T
Sbjct: 273 RLWELLSDNDELTTQIRQVRFFVLDEADRMVENGHFAELDKII-RLTARPDPNSLEAQIQ 331
Query: 984 --------TETSQPR-QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 1034
++++Q + QTFVFSAT++ L+ +L K + K K S D I RL
Sbjct: 332 EVKLEDDTSDSAQNQMQTFVFSATMSKDLQQNLKRHK-RFKDKSSSTIDDLILRLD--FR 388
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLT 1094
+ P IVDL+ K G+ T ESK+ C +KD+YLYYF+L++PGR+L+F +SI ++RL
Sbjct: 389 DEQPAIVDLSPKDGVVSTFQESKVECITTDKDAYLYYFLLRYPGRSLIFLSSIDGIRRLA 448
Query: 1095 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154
LL +L+ P+H+ M QRQRLKNLDRF++ N LLATDVAARGLDIP I+HVIHY V
Sbjct: 449 PLLDLLQVKSWPIHSQMEQRQRLKNLDRFKNTPNCALLATDVAARGLDIPAIDHVIHYQV 508
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLS 1213
PR+ +IY+HR+GRTARA G L+L+ DE L + +SL +K D +P+ P++ ++L
Sbjct: 509 PRSGDIYVHRNGRTARAEKSGFGLLLVAPDERKLIRTLISSLGRKEDEIPELPVERTLLD 568
Query: 1214 LIKKRIDLAKSIEYLE-SKIKKNRPDNWL 1241
+K+RI+LA+ I+ ++ S KK +NWL
Sbjct: 569 RLKERINLAREIDKIQHSTTKKKHDNNWL 597
Score = 326 bits (836), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 193/514 (37%), Positives = 276/514 (53%), Gaps = 109/514 (21%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ EW + T++R + +GF PT IQ +P + R D++G A+TGSGKTLAF +P
Sbjct: 124 LPEWSNLGLSPTLLRRIKDQGFIKPTPIQRETLPLSTSGR-DVIGIAQTGSGKTLAFALP 182
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL I+ S N + +++ + L ALI+APTR
Sbjct: 183 ILRHIL------------------------------STNRLKSLRRQKRNLKALIVAPTR 212
Query: 270 ELAIQVQNHI-----------LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
ELA+QV HI ++A V VA +VGGMS +KQ R+L + ++VATPG
Sbjct: 213 ELALQVSAHINACAPQRSKEEIEAHLPPLVSVATIVGGMSQQKQTRMLERGADVIVATPG 272
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RLWE + T++ ++ + V+DE DRM+E+GHF EL I+ R+T ++P +E
Sbjct: 273 RLWELLSDNDELTTQIRQVRFFVLDEADRMVENGHFAELDKII-RLT----ARPDPNSLE 327
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
+ E+K L+ T QTFVFSAT++ L+ NLK+ K
Sbjct: 328 A-QIQEVK--LEDDTSDSAQNQMQTFVFSATMSKDLQQ--NLKRH--------------K 368
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
R +D KS +D ++ + D +D
Sbjct: 369 RFKD----KSSSTID--------------DLILRLDFRD--------------------- 389
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
+ P IVDL+ K G+ T ESK+ C +KD+YLYYF+L++PGR+L+F +SI ++
Sbjct: 390 ----EQPAIVDLSPKDGVVSTFQESKVECITTDKDAYLYYFLLRYPGRSLIFLSSIDGIR 445
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
RL LL +L+ P+H+ M QRQRLKNLDRF++ N LLATDVAARGLDIP I+HVIH
Sbjct: 446 RLAPLLDLLQVKSWPIHSQMEQRQRLKNLDRFKNTPNCALLATDVAARGLDIPAIDHVIH 505
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
Y VPR+ +IY+HR+GRTARA G ++L+ DE
Sbjct: 506 YQVPRSGDIYVHRNGRTARAEKSGFGLLLVAPDE 539
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 65/99 (65%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKK 1296
D ++HR+GRTARA G L+L+ DE L + +SL +K D +P+ P++ ++L +K+
Sbjct: 513 DIYVHRNGRTARAEKSGFGLLLVAPDERKLIRTLISSLGRKEDEIPELPVERTLLDRLKE 572
Query: 1297 RIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDE 1334
RI+LA+ I+ ++ S KK +NWL+ A+ +++ + DE
Sbjct: 573 RINLAREIDKIQHSTTKKKHDNNWLKMTAEALELDLSDE 611
Score = 61.6 bits (148), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 15/80 (18%)
Query: 1346 ESRNLRYSWDALILAPTRELAIQVQNHI-----------LDAGKYTPVKVACVVGGMSTE 1394
+ RNL+ ALI+APTRELA+QV HI ++A V VA +VGGMS +
Sbjct: 199 QKRNLK----ALIVAPTRELALQVSAHINACAPQRSKEEIEAHLPPLVSVATIVGGMSQQ 254
Query: 1395 KQLRILNKCPHILVATPGAL 1414
KQ R+L + ++VATPG L
Sbjct: 255 KQTRMLERGADVIVATPGRL 274
>gi|302676285|ref|XP_003027826.1| hypothetical protein SCHCODRAFT_70633 [Schizophyllum commune H4-8]
gi|300101513|gb|EFI92923.1| hypothetical protein SCHCODRAFT_70633 [Schizophyllum commune H4-8]
Length = 651
Score = 372 bits (955), Expect = e-99, Method: Compositional matrix adjust.
Identities = 212/526 (40%), Positives = 305/526 (57%), Gaps = 69/526 (13%)
Query: 753 LEVDTSNNE-DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVG 811
L VD N D + EW + + +++ L + F PT IQ+ + AL R D+VG
Sbjct: 62 LAVDEEPNALDTPTSLEEWEPYALHPQLLKTLQARNFLKPTPIQAAALIPALAGR-DVVG 120
Query: 812 AAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 871
A+TGSGKTLA+G+PIL + LENP + T E
Sbjct: 121 VAQTGSGKTLAYGLPILHHL---LENP-----------------------HKSTTGE--- 151
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYT-------------PVKVACVVGGMSTEK 918
+ + ALILAPTRELA+QV +H L+A T PV VA +VGGMS +K
Sbjct: 152 --KRPVRALILAPTRELALQVSSH-LNACLNTNSDAQTNAKKPPPPVSVAALVGGMSLQK 208
Query: 919 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 978
Q RIL + +LVATPGRLW+ IQ + + +LV+DE DRMIE+GHF EL N+L
Sbjct: 209 QKRILGRGVDVLVATPGRLWDVIQEDDDLARSIKNLKFLVLDEADRMIEAGHFAELDNVL 268
Query: 979 DRVTMTETSQPR------------QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026
R+T+ QTFVFSATL+ L+ +L +K KS+K S
Sbjct: 269 -RLTLRANKYDEREDDDENIQDGLQTFVFSATLSKDLQRNLKKRKAPGKSRKPRAAPAST 327
Query: 1027 KRLQDLL-----NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 1081
L DLL + P+++DL+ K G+ TL ESK+ C +KD YLYYF+L++PGR+L
Sbjct: 328 --LDDLLMRLDFRDEEPEVIDLSPKGGVVSTLKESKVECVVSDKDVYLYYFLLRYPGRSL 385
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF ++I ++RL L+ +L+ PLH+ + QRQRLKNLDRF+ N +LLATD+AARGL
Sbjct: 386 VFLSAIDGIRRLLPLMELLEIKAFPLHSQLEQRQRLKNLDRFKSTPNCVLLATDIAARGL 445
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV- 1200
DIP ++HV+HY +PR+++ YIHR+GRTARAN G ++++ DE + + NS+ ++
Sbjct: 446 DIPAVDHVLHYQIPRSADAYIHRNGRTARANAAGFSMLMCAPDERKVARSLLNSVGRQFD 505
Query: 1201 DLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN-WLHRSG 1245
D+P+ P++ S+ +K RI LAK I+ + ++KK + + W+ +
Sbjct: 506 DIPELPVERSLFDKLKARIQLAKQIDTAQHRVKKEKHERKWMREAA 551
Score = 312 bits (800), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 199/543 (36%), Positives = 275/543 (50%), Gaps = 141/543 (25%)
Query: 136 LEVDTSNNE-DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVG 194
L VD N D + EW + + +++ L + F PT IQ+ + AL R D+VG
Sbjct: 62 LAVDEEPNALDTPTSLEEWEPYALHPQLLKTLQARNFLKPTPIQAAALIPALAGR-DVVG 120
Query: 195 AAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254
A+TGSGKTLA+G+PIL + LENP + +TT +
Sbjct: 121 VAQTGSGKTLAYGLPILHHL---LENPHK------------------------STTGEKR 153
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYT-------------PVKVACVVGGMSTEK 301
R ALILAPTRELA+QV +H L+A T PV VA +VGGMS +K
Sbjct: 154 PVR----ALILAPTRELALQVSSH-LNACLNTNSDAQTNAKKPPPPVSVAALVGGMSLQK 208
Query: 302 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
Q RIL + +LVATPGRLW+ IQ + + +LV+DE DRMIE+G
Sbjct: 209 QKRILGRGVDVLVATPGRLWDVIQEDDDLARSIKNLKFLVLDEADRMIEAG--------- 259
Query: 362 DRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPR------------QTFVFSAT 409
HF EL N+L R+T+ QTFVFSAT
Sbjct: 260 -------------------HFAELDNVL-RLTLRANKYDEREDDDENIQDGLQTFVFSAT 299
Query: 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469
L+ L+ +L +K KS+K S L DLL
Sbjct: 300 LSKDLQRNLKKRKAPGKSRKPRAAPAST--LDDLL------------------------- 332
Query: 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH 529
+ D +D + P+++DL+ K G+ TL ESK+ C
Sbjct: 333 -MRLDFRD-------------------------EEPEVIDLSPKGGVVSTLKESKVECVV 366
Query: 530 DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 589
+KD YLYYF+L++PGR+LVF ++I ++RL L+ +L+ PLH+ + QRQRLKNLDR
Sbjct: 367 SDKDVYLYYFLLRYPGRSLVFLSAIDGIRRLLPLMELLEIKAFPLHSQLEQRQRLKNLDR 426
Query: 590 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIE 649
F+ N +LLATD+AARGLDIP ++HV+HY +PR+++ YIHR+GRTARAN G ++++
Sbjct: 427 FKSTPNCVLLATDIAARGLDIPAVDHVLHYQIPRSADAYIHRNGRTARANAAGFSMLMCA 486
Query: 650 SDE 652
DE
Sbjct: 487 PDE 489
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV-DLPDFPIDESVLSLIKK 1296
D ++HR+GRTARAN G ++++ DE + + NS+ ++ D+P+ P++ S+ +K
Sbjct: 463 DAYIHRNGRTARANAAGFSMLMCAPDERKVARSLLNSVGRQFDDIPELPVERSLFDKLKA 522
Query: 1297 RIDLAKSIEYLESKIKKNRPDN-WLEKAAKDMDIIIDDE 1334
RI LAK I+ + ++KK + + W+ +AA M++ +D +
Sbjct: 523 RIQLAKQIDTAQHRVKKEKHERKWMREAADAMEVELDSD 561
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 61/106 (57%), Gaps = 21/106 (19%)
Query: 1339 PNQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYT-------------PVKVA 1385
P++ E R +R ALILAPTRELA+QV +H L+A T PV VA
Sbjct: 144 PHKSTTGEKRPVR----ALILAPTRELALQVSSH-LNACLNTNSDAQTNAKKPPPPVSVA 198
Query: 1386 CVVGGMSTEKQLRILNKCPHILVATPGALS---LKRIDLAKSIEYL 1428
+VGGMS +KQ RIL + +LVATPG L + DLA+SI+ L
Sbjct: 199 ALVGGMSLQKQKRILGRGVDVLVATPGRLWDVIQEDDDLARSIKNL 244
>gi|74178110|dbj|BAE29843.1| unnamed protein product [Mus musculus]
gi|74220253|dbj|BAE31305.1| unnamed protein product [Mus musculus]
gi|74225346|dbj|BAE31603.1| unnamed protein product [Mus musculus]
Length = 857
Score = 372 bits (954), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 192/392 (48%), Positives = 265/392 (67%), Gaps = 6/392 (1%)
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 901
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 353 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 412
Query: 902 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVID
Sbjct: 413 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDG 472
Query: 962 TDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKV 1019
DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK KK+
Sbjct: 473 ADRMVEKGHFAELSQLLEMLNDSQYNPSRQTLVFSATLTLVHQAPARILHKK---HVKKM 529
Query: 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 1079
K D +Q + PK++DLT G +TLTE+KI C+ DEKD YLYYF++Q+PGR
Sbjct: 530 DKTDKLDLLMQKVGMRGKPKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFLMQYPGR 589
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAAR
Sbjct: 590 SLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQRLRNLEQFARLQDCVLLATDVAAR 649
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EGL+L+LI +++ + K++ +L+K
Sbjct: 650 GLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKD 709
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 710 EDIPLFPVQSKYMDVVKERIRLARQIEKAEYR 741
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 178/431 (41%), Positives = 241/431 (55%), Gaps = 90/431 (20%)
Query: 226 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 284
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 353 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 412
Query: 285 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVID
Sbjct: 413 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDG 472
Query: 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404
DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 473 ADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPSRQTL 504
Query: 405 VFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
VFSAT L H + KK KK+ K D K+ L +K+G+
Sbjct: 505 VFSATLTLVHQAPARILHKK---HVKKMDKTD---------------KLDLLMQKVGMRG 546
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
PK++DLT G +TLTE
Sbjct: 547 -----------------------------------------KPKVIDLTRNEGTVETLTE 565
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+Q
Sbjct: 566 TKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQ 625
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
RL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EG
Sbjct: 626 RLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEG 685
Query: 643 LTVVLIESDEI 653
L+++LI +++
Sbjct: 686 LSLMLIGPEDV 696
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 390 GLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 448
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +PE ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 187 DQKADVSAWRDLFVPEAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 246
Query: 205 AFGIPILTGIV--NKLENP 221
AF IP++ ++ +K++ P
Sbjct: 247 AFAIPMIHSVLQWHKMKAP 265
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +PE ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 187 DQKADVSAWRDLFVPEAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 246
Query: 822 AFGIPILTGIV--NKLENP 838
AF IP++ ++ +K++ P
Sbjct: 247 AFAIPMIHSVLQWHKMKAP 265
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 671 YIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKDEDIPLFPVQSKYMDVVKERIR 730
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 731 LARQIEKAEYRNFQACLHNSWIEQ 754
>gi|225433316|ref|XP_002282504.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Vitis vinifera]
gi|296083755|emb|CBI23744.3| unnamed protein product [Vitis vinifera]
Length = 788
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 212/541 (39%), Positives = 317/541 (58%), Gaps = 56/541 (10%)
Query: 746 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
S +K+ +E D+ + + + EW + + +++++++ GFK PT IQ +P+A
Sbjct: 137 VSNDKDDVEGDSVDEAEFY----EWNELRLHPLLMKSIHRLGFKQPTPIQKACIPAAAHQ 192
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
KD+VGA+ETGSGKTLA G+PIL ++ + E AE + E EE+ A
Sbjct: 193 GKDVVGASETGSGKTLALGLPILQRLLEEREKA-------------AEPLAENSEEKYAE 239
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
L ALI+ PTRELA+QV +H+ + K T V+V +VGGMSTEKQ R+L
Sbjct: 240 G--------GILRALIITPTRELALQVTDHLKEVAKGTNVRVVPIVGGMSTEKQERLLKA 291
Query: 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
P I+V TPGRLWE + G HL EL+ +++ V+DE DRM+E+GHF EL++I+D + T
Sbjct: 292 RPEIVVGTPGRLWELMSRGEDHLVELHSLSFFVLDEADRMVENGHFHELQSIIDILPKTS 351
Query: 986 TS-------------------QPRQTFVFSATLTHSLKNSLNLKKGQSKSKK-VSKGDPS 1025
S + RQTFVFSAT+ S LK+G +SK+ ++ G S
Sbjct: 352 GSMESLSQNTENCFTVSNIQRKKRQTFVFSATIALSADFRKKLKRGALRSKQLMNDGLNS 411
Query: 1026 IKRLQDLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVF 1083
I+ L + ++ + IVDLT + L ES I C+ ++KD+YLYY + H GRT+VF
Sbjct: 412 IETLSERAGMRPNAAIVDLTNASIMANKLEESFIECREEDKDAYLYYILSVHGQGRTIVF 471
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
C SI++++ + LL +L + LHA M QR RLK +DRFR + IL+ATDVAARGLDI
Sbjct: 472 CTSIAALRHTSSLLRILGINVWTLHAQMQQRARLKAIDRFRGNEHGILVATDVAARGLDI 531
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
PG+ V+HY +P ++E+Y+HRSGRTARA+ +G ++ LI ++ + + S K+
Sbjct: 532 PGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALISPNDRSKFANLCKSFSKE-SFQ 590
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP-DNWLHRSGRTARANNEGLTLVLIES 1262
FPI+ S + + KR+ LA+ I+ + K + + +W + N E L L++ ES
Sbjct: 591 RFPIESSYMPEVVKRLSLARQIDKISRKDSQEKAKKSWFEQ-------NAEALELIVDES 643
Query: 1263 D 1263
D
Sbjct: 644 D 644
Score = 335 bits (858), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 200/532 (37%), Positives = 291/532 (54%), Gaps = 92/532 (17%)
Query: 129 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
S +K+ +E D+ + + + EW + + +++++++ GFK PT IQ +P+A
Sbjct: 137 VSNDKDDVEGDSVDEAEFY----EWNELRLHPLLMKSIHRLGFKQPTPIQKACIPAAAHQ 192
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
KD+VGA+ETGSGKTLA G+PIL ++ + E AE + E EE+ A
Sbjct: 193 GKDVVGASETGSGKTLALGLPILQRLLEEREKA-------------AEPLAENSEEKYAE 239
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
L ALI+ PTRELA+QV +H+ + K T V+V +VGGMSTEKQ R+L
Sbjct: 240 G--------GILRALIITPTRELALQVTDHLKEVAKGTNVRVVPIVGGMSTEKQERLLKA 291
Query: 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
P I+V TPGRLWE + G HL EL+ +++ V+DE DRM+E+GHF EL++I+D + T
Sbjct: 292 RPEIVVGTPGRLWELMSRGEDHLVELHSLSFFVLDEADRMVENGHFHELQSIIDILPKTS 351
Query: 369 TSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSK 428
S + F + NI + RQTFVFSAT+ S LK+G +SK
Sbjct: 352 GSMESLSQNTENCFT-VSNI--------QRKKRQTFVFSATIALSADFRKKLKRGALRSK 402
Query: 429 KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 488
++ + D LN I L+E+ G+
Sbjct: 403 QL---------MNDGLN----SIETLSERAGMRPNAA----------------------- 426
Query: 489 GRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRT 547
IVDLT + L ES I C+ ++KD+YLYY + H GRT
Sbjct: 427 ------------------IVDLTNASIMANKLEESFIECREEDKDAYLYYILSVHGQGRT 468
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
+VFC SI++++ + LL +L + LHA M QR RLK +DRFR + IL+ATDVAARG
Sbjct: 469 IVFCTSIAALRHTSSLLRILGINVWTLHAQMQQRARLKAIDRFRGNEHGILVATDVAARG 528
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659
LDIPG+ V+HY +P ++E+Y+HRSGRTARA+ +G ++ LI ++ ++KF
Sbjct: 529 LDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALISPND---RSKF 577
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV +H+ + K T V+V +VGGMSTEKQ R+L P I+V TPG L
Sbjct: 245 ALIITPTRELALQVTDHLKEVAKGTNVRVVPIVGGMSTEKQERLLKARPEIVVGTPGRL 303
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA+ +G ++ LI ++ + + S K+ FPI+ S + + KR+
Sbjct: 549 YVHRSGRTARASADGCSIALISPNDRSKFANLCKSFSKE-SFQRFPIESSYMPEVVKRLS 607
Query: 1300 LAKSIEYLESKIKKNRP-DNWLEKAAKDMDIIIDDEN 1335
LA+ I+ + K + + +W E+ A+ +++I+D+ +
Sbjct: 608 LARQIDKISRKDSQEKAKKSWFEQNAEALELIVDESD 644
>gi|393212749|gb|EJC98248.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 718
Score = 370 bits (951), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 216/526 (41%), Positives = 310/526 (58%), Gaps = 82/526 (15%)
Query: 761 EDMF--VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSG 818
ED+F + EW F++ ++ AL+ + F TPT IQ +P AL KD+VG A+TGSG
Sbjct: 109 EDVFDLSLLPEWSDFSLHARLLSALHSQKFATPTPIQRSAIPVALKG-KDVVGVAQTGSG 167
Query: 819 KTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY 878
KTLA+G+PIL ++ ++ P K + L
Sbjct: 168 KTLAYGLPILNHLL-QMGRP---------------------------------KGKRPLQ 193
Query: 879 ALILAPTRELAIQVQNH-----ILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHIL 930
AL+LAPTRELA+QV H + DA + T V + VVGGM+ +KQ+RI+ + IL
Sbjct: 194 ALVLAPTRELALQVTEHLKACVVEDAERRTGAPRVSIGTVVGGMAIQKQIRIIERGVDIL 253
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM----TET 986
VATPGRLW+ I+ + +L + +LV+DE DRMIE+GHF EL NI+ T TET
Sbjct: 254 VATPGRLWDLIEEDNSLSEQLRTLRFLVLDEADRMIETGHFAELDNIIRLTTRQSKSTET 313
Query: 987 SQ--------------------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK---GD 1023
+ P QTF+FSATL+ L+ NLKK + S KV+K D
Sbjct: 314 DEAFMFGETETRGKNDESNEETPMQTFIFSATLSRDLQQ--NLKKWKRISNKVTKKGTTD 371
Query: 1024 PSIKRLQDLLNI-----KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+ L +LL+ P+++DL+ + GI TL ES++ C +KD YLYYF+L++PG
Sbjct: 372 KPVSTLDELLSRLDFRDPEPEVIDLSPEGGIVSTLKESQVECLSADKDVYLYYFLLRYPG 431
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF +SI ++RL L +L+ PLH+ + QRQRLKNLDRF+ NSILLATDVAA
Sbjct: 432 RSLVFLSSIDGIRRLLPLCELLQLHAFPLHSQLQQRQRLKNLDRFKSTANSILLATDVAA 491
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY +PR++++YIHR+GRTARA+ G +L++ DE + + SL +
Sbjct: 492 RGLDIPSVDHVIHYQIPRSADVYIHRNGRTARASRHGFSLIMCAPDERRILRALHTSLNR 551
Query: 1199 --KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
+ ++PD PI+ +L +K R+ LAK I+ ++KK + + NW+
Sbjct: 552 VGENEIPDMPIELDLLDKLKGRVQLAKRIDAAAHRVKKEKHERNWM 597
Score = 332 bits (852), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 205/522 (39%), Positives = 293/522 (56%), Gaps = 105/522 (20%)
Query: 144 EDMF--VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSG 201
ED+F + EW F++ ++ AL+ + F TPT IQ +P AL KD+VG A+TGSG
Sbjct: 109 EDVFDLSLLPEWSDFSLHARLLSALHSQKFATPTPIQRSAIPVALKG-KDVVGVAQTGSG 167
Query: 202 KTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY 261
KTLA+G+PIL ++ ++ P K + L
Sbjct: 168 KTLAYGLPILNHLL-QMGRP---------------------------------KGKRPLQ 193
Query: 262 ALILAPTRELAIQVQNH-----ILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHIL 313
AL+LAPTRELA+QV H + DA + T V + VVGGM+ +KQ+RI+ + IL
Sbjct: 194 ALVLAPTRELALQVTEHLKACVVEDAERRTGAPRVSIGTVVGGMAIQKQIRIIERGVDIL 253
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
VATPGRLW+ I+ + +L + +LV+DE DRMIE+GHF EL NI+ R+T T Q +
Sbjct: 254 VATPGRLWDLIEEDNSLSEQLRTLRFLVLDEADRMIETGHFAELDNII-RLT---TRQSK 309
Query: 374 QTMI-ESGHFPELKNILDRVTMTETSQ--PRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 430
T E+ F E + R E+++ P QTF+FSATL+ L+ NLKK + S KV
Sbjct: 310 STETDEAFMFGETET---RGKNDESNEETPMQTFIFSATLSRDLQQ--NLKKWKRISNKV 364
Query: 431 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
+K + K + L ++L + D +D
Sbjct: 365 TKKGTTDKPVSTL-----------------------DELLSRLDFRDP------------ 389
Query: 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550
P+++DL+ + GI TL ES++ C +KD YLYYF+L++PGR+LVF
Sbjct: 390 -------------EPEVIDLSPEGGIVSTLKESQVECLSADKDVYLYYFLLRYPGRSLVF 436
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610
+SI ++RL L +L+ PLH+ + QRQRLKNLDRF+ NSILLATDVAARGLDI
Sbjct: 437 LSSIDGIRRLLPLCELLQLHAFPLHSQLQQRQRLKNLDRFKSTANSILLATDVAARGLDI 496
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
P ++HVIHY +PR++++YIHR+GRTARA+ G ++++ DE
Sbjct: 497 PSVDHVIHYQIPRSADVYIHRNGRTARASRHGFSLIMCAPDE 538
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK--KVDLPDFPIDESVLSLIK 1295
D ++HR+GRTARA+ G +L++ DE + + SL + + ++PD PI+ +L +K
Sbjct: 512 DVYIHRNGRTARASRHGFSLIMCAPDERRILRALHTSLNRVGENEIPDMPIELDLLDKLK 571
Query: 1296 KRIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDE 1334
R+ LAK I+ ++KK + + NW+++ A+ M+I +D +
Sbjct: 572 GRVQLAKRIDAAAHRVKKEKHERNWMKETAEAMEIELDSD 611
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 8/67 (11%)
Query: 1356 ALILAPTRELAIQVQNH-----ILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHIL 1407
AL+LAPTRELA+QV H + DA + T V + VVGGM+ +KQ+RI+ + IL
Sbjct: 194 ALVLAPTRELALQVTEHLKACVVEDAERRTGAPRVSIGTVVGGMAIQKQIRIIERGVDIL 253
Query: 1408 VATPGAL 1414
VATPG L
Sbjct: 254 VATPGRL 260
>gi|392573357|gb|EIW66497.1| hypothetical protein TREMEDRAFT_65359 [Tremella mesenterica DSM 1558]
Length = 744
Score = 370 bits (949), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 230/618 (37%), Positives = 340/618 (55%), Gaps = 99/618 (16%)
Query: 674 EADKEKTEDINVTVSSKKKKLKRKQNPSQV-EVSELSANTNDPDDQVNKTEEIQSDE--P 730
E +K I S K K K +N ++ E S + D D+ +N+ +EI D+ P
Sbjct: 64 EGGAKKARFIPAPNSKGKGKAKETKNGKRIAEASNQGIDGEDEDETINEDQEITGDDEIP 123
Query: 731 HSKKLKQKKKKKQTYTSANKELLEVDTSNN--EDMF--VQMAEWVKFNIPETIIRALYQK 786
+++++ ++ EVD ++ ++ F + +W + + R+L +
Sbjct: 124 SFSRVEEE------------DMNEVDQEDHLGDEAFDDTLLPQWSSIPLHPILKRSLSKL 171
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
GF PT IQ+ +P LA +D+VG AETGSGKTLA+ +PIL+ + L NP
Sbjct: 172 GFTKPTDIQARALP-VCLAGRDVVGVAETGSGKTLAYALPILSYL---LRNP-------- 219
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI-------LDA 899
A T+ K+T L +LIL PTRELA+QV +H+
Sbjct: 220 ----------------RATTS---KRT---LSSLILCPTRELALQVVDHLNTVIRQTFPE 257
Query: 900 GKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958
K P + V V+GG+S +KQ RIL++ +LVATPGRLW+ I+ E+ +I +LV
Sbjct: 258 KKGPPRISVGSVIGGLSAQKQQRILDRGCDVLVATPGRLWDLIKANDDLAAEIKRIRFLV 317
Query: 959 IDETDRMIESGHFPELKNILDRVT----------MTETSQP----------------RQT 992
IDE DRMIE+GHF EL++I+ R+T E P QT
Sbjct: 318 IDEADRMIENGHFAELESIV-RLTERQSRLSGRGAAEEEDPVFAATSSLDDVSARSDMQT 376
Query: 993 FVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL-----LNIKSPKIVDLTEKI 1047
F+FSATL+ L+ + KK S+ KGD L+DL K+P+++DL+ +
Sbjct: 377 FIFSATLSKDLQQNFKRKKRGSQ-----KGDKKSSALEDLVERLDFRDKNPEVIDLSPEG 431
Query: 1048 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 1107
G+ L ES I C EKD +LYYF+L++PGR+LVF SI ++RL L +L+ PL
Sbjct: 432 GVVAMLKESMIECVLSEKDLFLYYFLLRYPGRSLVFVGSIDGIRRLVPLFELLRVPVWPL 491
Query: 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
H+ + Q+QRLKNLDRF+ N IL+ATDVAARGLDIP ++HV+H+++PRT++ YIHRSGR
Sbjct: 492 HSQLQQKQRLKNLDRFKTSKNGILIATDVAARGLDIPHVDHVVHFNLPRTADAYIHRSGR 551
Query: 1168 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEY 1227
TARA N G L L+ +++ + + SL + +D+PD PI+ L +K+RI +A+ IE
Sbjct: 552 TARAQNPGFALQLVSAEDKNVQRSLMRSLGRDIDIPDLPIEGGFLPKLKERIRVAREIEK 611
Query: 1228 LESKIKKNRPD-NWLHRS 1244
+ +KK D NWL +
Sbjct: 612 AQHGVKKENHDRNWLREA 629
Score = 328 bits (841), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 221/629 (35%), Positives = 330/629 (52%), Gaps = 128/629 (20%)
Query: 43 LQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQV-EVSELSANTNDPDDQ 101
L+E ++ E + E +K I S K K K +N ++ E S + D D+
Sbjct: 50 LEELDDVAVEWVQDEGGAKKARFIPAPNSKGKGKAKETKNGKRIAEASNQGIDGEDEDET 109
Query: 102 VNKTEEIQSDE--PSSKKLKQKKKKKQTYTSANKELLEVDTSNN--EDMF--VQMAEWVK 155
+N+ +EI D+ PS +++++ ++ EVD ++ ++ F + +W
Sbjct: 110 INEDQEITGDDEIPSFSRVEEE------------DMNEVDQEDHLGDEAFDDTLLPQWSS 157
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + R+L + GF PT IQ+ +P LA +D+VG AETGSGKTLA+ +PIL+ +
Sbjct: 158 IPLHPILKRSLSKLGFTKPTDIQARALP-VCLAGRDVVGVAETGSGKTLAYALPILSYL- 215
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
L NP A T+ K+T L +LIL PTRELA+QV
Sbjct: 216 --LRNP------------------------RATTS---KRT---LSSLILCPTRELALQV 243
Query: 276 QNHI-------LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
+H+ K P + V V+GG+S +KQ RIL++ +LVATPGRLW+ I+
Sbjct: 244 VDHLNTVIRQTFPEKKGPPRISVGSVIGGLSAQKQQRILDRGCDVLVATPGRLWDLIKAN 303
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES-GHFPELK 386
E+ +I +LVIDE DRMIE+GHF EL++I V +TE RQ+ + G E
Sbjct: 304 DDLAAEIKRIRFLVIDEADRMIENGHFAELESI---VRLTE----RQSRLSGRGAAEEED 356
Query: 387 NILDRVTMTETSQPR---QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL 443
+ + + R QTF+FSATL+ L+ + KK S+ KGD
Sbjct: 357 PVFAATSSLDDVSARSDMQTFIFSATLSKDLQQNFKRKKRGSQ-----KGDK-------- 403
Query: 444 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
KS + DL E++ D +D K
Sbjct: 404 ---KSSALEDLVERL---------------DFRD-------------------------K 420
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
+P+++DL+ + G+ L ES I C EKD +LYYF+L++PGR+LVF SI ++RL L
Sbjct: 421 NPEVIDLSPEGGVVAMLKESMIECVLSEKDLFLYYFLLRYPGRSLVFVGSIDGIRRLVPL 480
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
+L+ PLH+ + Q+QRLKNLDRF+ N IL+ATDVAARGLDIP ++HV+H+++PR
Sbjct: 481 FELLRVPVWPLHSQLQQKQRLKNLDRFKTSKNGILIATDVAARGLDIPHVDHVVHFNLPR 540
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDE 652
T++ YIHRSGRTARA N G + L+ +++
Sbjct: 541 TADAYIHRSGRTARAQNPGFALQLVSAED 569
Score = 81.3 bits (199), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Query: 1225 IEYLESKIKKNRP---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1281
I +++ + N P D ++HRSGRTARA N G L L+ +++ + + SL + +D+
Sbjct: 527 IPHVDHVVHFNLPRTADAYIHRSGRTARAQNPGFALQLVSAEDKNVQRSLMRSLGRDIDI 586
Query: 1282 PDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIID 1332
PD PI+ L +K+RI +A+ IE + +KK D NWL +AA+ MD+ ID
Sbjct: 587 PDLPIEGGFLPKLKERIRVAREIEKAQHGVKKENHDRNWLREAAEAMDVDID 638
Score = 61.2 bits (147), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 12/89 (13%)
Query: 1356 ALILAPTRELAIQVQNHI-------LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHIL 1407
+LIL PTRELA+QV +H+ K P + V V+GG+S +KQ RIL++ +L
Sbjct: 230 SLILCPTRELALQVVDHLNTVIRQTFPEKKGPPRISVGSVIGGLSAQKQQRILDRGCDVL 289
Query: 1408 VATPGALSLKRIDLAKSIEYLESKIKKNR 1436
VATPG L DL K+ + L ++IK+ R
Sbjct: 290 VATPGRL----WDLIKANDDLAAEIKRIR 314
>gi|345803790|ref|XP_537542.3| PREDICTED: ATP-dependent RNA helicase DDX24 [Canis lupus familiaris]
Length = 852
Score = 369 bits (948), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 184/361 (50%), Positives = 253/361 (70%), Gaps = 7/361 (1%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 378 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVVAT 437
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H HL+ L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 438 PGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLGDSQYNPKRQTL 497
Query: 994 VFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGIT 1050
+FSATLT H + KK K K +K D +++ + ++ PK++DLT
Sbjct: 498 IFSATLTLVHQAPARILHKKHTKKIDKTAKLDLFVQK----IGMRGKPKVIDLTRNEATV 553
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
+TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA
Sbjct: 554 ETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHAC 613
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTAR
Sbjct: 614 MHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTAR 673
Query: 1171 ANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLES 1230
A NEGL+L+LI ++ + K++ +L+K D+P FP+ + +K+RI LA+ IE E
Sbjct: 674 ATNEGLSLMLIGPEDAINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIHLARQIEKAEY 733
Query: 1231 K 1231
+
Sbjct: 734 R 734
Score = 305 bits (781), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 170/398 (42%), Positives = 227/398 (57%), Gaps = 89/398 (22%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 378 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVVAT 437
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE I+ H HL+ L ++ LV+DE DRM+E G
Sbjct: 438 PGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKG------------------------ 473
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGD 434
HF EL +L+ + ++ + RQT +FSAT L H + KK +KK+ K
Sbjct: 474 ----HFAELSQLLEMLGDSQYNPKRQTLIFSATLTLVHQAPARILHKK---HTKKIDK-- 524
Query: 435 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCE 494
+ K+ +KIG+
Sbjct: 525 -------------TAKLDLFVQKIGMRG-------------------------------- 539
Query: 495 EIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSI
Sbjct: 540 ---------KPKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSI 590
Query: 555 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 614
S +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++
Sbjct: 591 SCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQ 650
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
HVIHY VPRTSEIY+HRSGRTARA NEGL+++LI ++
Sbjct: 651 HVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPED 688
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 383 GLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVVATPGRL 441
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI ++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 664 YVHRSGRTARATNEGLSLMLIGPEDAINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIH 723
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 724 LARQIEKAEYRNFQACLHNSWIEQ 747
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D + W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 184 DHKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 243
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 244 AFAIPMIHTVLQ 255
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D + W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 184 DHKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 243
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 244 AFAIPMIHTVLQ 255
>gi|301777516|ref|XP_002924172.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Ailuropoda
melanoleuca]
gi|281354104|gb|EFB29688.1| hypothetical protein PANDA_013454 [Ailuropoda melanoleuca]
Length = 853
Score = 369 bits (948), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 182/361 (50%), Positives = 254/361 (70%), Gaps = 7/361 (1%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMS +KQ R+LN+ P I+VAT
Sbjct: 378 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSAQKQQRMLNRQPEIVVAT 437
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H HL+ L ++ LV+DE DRM+E GHF EL +L+ ++ ++ + RQT
Sbjct: 438 PGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLSDSQYNPKRQTL 497
Query: 994 VFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGIT 1050
+FSATLT H + KK K K +K D ++++ ++ PK++DLT
Sbjct: 498 IFSATLTLVHQAPARILHKKHVKKIDKTAKLDLLVQKI----GMRGKPKVIDLTRNEATV 553
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
++LTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA
Sbjct: 554 ESLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHAC 613
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTAR
Sbjct: 614 MHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTAR 673
Query: 1171 ANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLES 1230
A NEGL+L+LI +++ + K++ +L+K D+P FP+ + +K+RI LA+ IE E
Sbjct: 674 ATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIHLARQIEKAEY 733
Query: 1231 K 1231
+
Sbjct: 734 R 734
Score = 306 bits (784), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 168/399 (42%), Positives = 229/399 (57%), Gaps = 89/399 (22%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMS +KQ R+LN+ P I+VAT
Sbjct: 378 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSAQKQQRMLNRQPEIVVAT 437
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE I+ H HL+ L ++ LV+DE DRM+E G
Sbjct: 438 PGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKG------------------------ 473
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGD 434
HF EL +L+ ++ ++ + RQT +FSAT L H + KK
Sbjct: 474 ----HFAELSQLLEMLSDSQYNPKRQTLIFSATLTLVHQAPARILHKK------------ 517
Query: 435 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCE 494
+K++ K+ K+ L +KIG+
Sbjct: 518 -HVKKID-----KTAKLDLLVQKIGMRG-------------------------------- 539
Query: 495 EIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554
PK++DLT ++LTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSI
Sbjct: 540 ---------KPKVIDLTRNEATVESLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSI 590
Query: 555 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 614
S +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++
Sbjct: 591 SCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQ 650
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
HVIHY VPRTSEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 651 HVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDV 689
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMS +KQ R+LN+ P I+VATPG L
Sbjct: 383 GLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSAQKQQRMLNRQPEIVVATPGRL 441
Score = 70.5 bits (171), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 664 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIH 723
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 724 LARQIEKAEYRNFQACLHNSWIEQ 747
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
+D + W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKT
Sbjct: 183 QDQKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKT 242
Query: 204 LAFGIPILTGIVN-KLENPT 222
LAF IP++ ++ +++ PT
Sbjct: 243 LAFAIPMIHAVLQWQVKKPT 262
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
+D + W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKT
Sbjct: 183 QDQKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKT 242
Query: 821 LAFGIPILTGIVN-KLENPT 839
LAF IP++ ++ +++ PT
Sbjct: 243 LAFAIPMIHAVLQWQVKKPT 262
>gi|291413819|ref|XP_002723168.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Oryctolagus
cuniculus]
Length = 848
Score = 369 bits (948), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 183/375 (48%), Positives = 257/375 (68%), Gaps = 7/375 (1%)
Query: 860 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ 919
+E + L L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ
Sbjct: 361 QESEGGAAAWEAPPARPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQ 420
Query: 920 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 979
R+LN+ P I++ATPGRLWE I+ H HL+ L ++ LV+DE DRM+E GHF EL +L+
Sbjct: 421 QRMLNRHPEIVIATPGRLWELIKERHSHLSNLRQLRCLVLDEADRMVEKGHFAELSQLLE 480
Query: 980 RVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037
+ ++ + RQT VFSATLT H L L KK K K +K D ++++ ++
Sbjct: 481 MLNDSQYNPQRQTLVFSATLTLVHQLPARLLHKKHTKKMDKTAKLDLLVQKV----GMRG 536
Query: 1038 -PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 1096
PK++DLT +TLTE+KI C+ +EKD YLYYF++Q+PGR+LVF NSIS +KRL+ L
Sbjct: 537 KPKVIDLTRNEATVETLTETKIHCETEEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGL 596
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPR
Sbjct: 597 LKVLDIMPLTLHACMHQKQRLRNLEQFARMEDCVLLATDVAARGLDIPKVQHVIHYQVPR 656
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1216
TSEIY+HRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+ + +K
Sbjct: 657 TSEIYVHRSGRTARATSEGLSLLLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVK 716
Query: 1217 KRIDLAKSIEYLESK 1231
+RI LA+ IE E +
Sbjct: 717 ERIRLARQIEKAEYR 731
Score = 307 bits (787), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 169/413 (40%), Positives = 230/413 (55%), Gaps = 89/413 (21%)
Query: 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ 302
+E + L L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ
Sbjct: 361 QESEGGAAAWEAPPARPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQ 420
Query: 303 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 362
R+LN+ P I++ATPGRLWE I+ H HL+ L ++ LV+DE DRM+E G
Sbjct: 421 QRMLNRHPEIVIATPGRLWELIKERHSHLSNLRQLRCLVLDEADRMVEKG---------- 470
Query: 363 RVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNL 420
HF EL +L+ + ++ + RQT VFSATLT H L L
Sbjct: 471 ------------------HFAELSQLLEMLNDSQYNPQRQTLVFSATLTLVHQLPARLLH 512
Query: 421 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480
KK K K + K+ L +K+G+
Sbjct: 513 KKHTKKMDKTA------------------KLDLLVQKVGMRG------------------ 536
Query: 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540
PK++DLT +TLTE+KI C+ +EKD YLYYF+
Sbjct: 537 -----------------------KPKVIDLTRNEATVETLTETKIHCETEEKDLYLYYFL 573
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLA
Sbjct: 574 MQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARMEDCVLLA 633
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
TDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA +EGL+++LI +++
Sbjct: 634 TDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATSEGLSLLLIGPEDV 686
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 8/77 (10%)
Query: 1346 ESRNLRYSWDA--------LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL 1397
ES +W+A L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ
Sbjct: 362 ESEGGAAAWEAPPARPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQ 421
Query: 1398 RILNKCPHILVATPGAL 1414
R+LN+ P I++ATPG L
Sbjct: 422 RMLNRHPEIVIATPGRL 438
Score = 74.7 bits (182), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 661 YVHRSGRTARATSEGLSLLLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIR 720
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 721 LARQIEKAEYRNFQACLHNSWIEQAAAALEIELEED 756
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 182 DQQADVSAWKDLFVPTPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 241
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 242 AFAIPMIHAVLQ 253
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 182 DQQADVSAWKDLFVPTPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 241
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 242 AFAIPMIHAVLQ 253
>gi|33150748|gb|AAP97252.1|AF134475_1 ATP-dependent RNA helicase [Homo sapiens]
Length = 486
Score = 369 bits (947), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 184/372 (49%), Positives = 257/372 (69%), Gaps = 6/372 (1%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L +L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPGR
Sbjct: 15 LLGRVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGR 74
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
LWE I+ H+HL L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT VFS
Sbjct: 75 LWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFS 134
Query: 997 ATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 1054
ATLT H + KK K K +K D +Q + PK++DLT +TLT
Sbjct: 135 ATLTLVHQAPARILHKKHTKKMDKTAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLT 191
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 192 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 251
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NE
Sbjct: 252 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE 311
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IK 1233
GL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI LA+ IE E + +
Sbjct: 312 GLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQ 371
Query: 1234 KNRPDNWLHRSG 1245
++W+ ++
Sbjct: 372 ACLHNSWIEQAA 383
Score = 305 bits (780), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 224/396 (56%), Gaps = 89/396 (22%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L +L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPGR
Sbjct: 15 LLGRVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGR 74
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
LWE I+ H+HL L ++ LV+DE DRM+E G
Sbjct: 75 LWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG--------------------------- 107
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
HF EL +L+ + ++ + RQT VFSAT L H + KK K K +
Sbjct: 108 -HFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTA------ 160
Query: 438 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497
K+ L +KIG+
Sbjct: 161 ------------KLDLLMQKIGMRG----------------------------------- 173
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +
Sbjct: 174 ------KPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCI 227
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617
KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVI
Sbjct: 228 KRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVI 287
Query: 618 HYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
HY VPRTSEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 288 HYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDV 323
Score = 77.4 bits (189), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 298 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 357
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 358 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 393
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 1358 ILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 19 VLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 75
>gi|357505253|ref|XP_003622915.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355497930|gb|AES79133.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 798
Score = 369 bits (947), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 201/501 (40%), Positives = 301/501 (60%), Gaps = 42/501 (8%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + +++A+++ GFK PT IQ +P+A KD++GAAETGSGKTLAFG+PIL
Sbjct: 164 WNELRLHPRLMKAIHKLGFKEPTPIQKACVPAAAHQGKDVIGAAETGSGKTLAFGLPIL- 222
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+L E+ E+ SG+ E E E+ A T L +LI+APTRELA
Sbjct: 223 ---QRLLEEREKAESISGVNGE------EAAEKYATT--------GLLRSLIIAPTRELA 265
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+QV H+ K+ V+V +VGG+ EKQ R+L P I+VATPGRLWE + G HL
Sbjct: 266 LQVAKHLKAVAKHINVRVTAIVGGILPEKQERLLKARPEIVVATPGRLWELMSSGEKHLI 325
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS-------------------QPR 990
EL+ +++ V+DE DRM++SGHF EL++I+D + M+ S + R
Sbjct: 326 ELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISSEDNSKDAQNCVTVSSIQKKKR 385
Query: 991 QTFVFSATLTHSLKNSLNLKKGQSKSKKVS-KGDPSIKRLQDLLNIK-SPKIVDLTEKIG 1048
QT VFSAT+ S LK+G + K++S G SI+ L + ++ + I+DLT
Sbjct: 386 QTLVFSATVALSADFRKKLKRGSIQKKQLSTDGLDSIETLSERAGMRPNAAIIDLTNPSI 445
Query: 1049 ITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPL 1107
+ + ES I C D+KD++LYY + H GRT+VFC SI++++ ++ +L +L + L
Sbjct: 446 LAAKIEESFIECTEDDKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVWTL 505
Query: 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
HA M QR RLK +DRFR+ +N IL+ATDVAARGLDIPG+ V+HY +P ++E+Y+HRSGR
Sbjct: 506 HAQMQQRARLKAMDRFRENDNGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGR 565
Query: 1168 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEY 1227
TARA+ EG ++ LI E + + S K + FP++ S + + KR+ LA+ I+
Sbjct: 566 TARASAEGCSIALISPKETSKFASLCKSFSKD-NFQRFPVENSYMPEVLKRLSLARQIDK 624
Query: 1228 LESKIKKNRPD-NWLHRSGRT 1247
+ K + + + +W R+ +
Sbjct: 625 ITRKDSQEKAEKSWFDRNASS 645
Score = 334 bits (856), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 212/592 (35%), Positives = 319/592 (53%), Gaps = 93/592 (15%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + + +++A+++ GFK PT IQ +P+A KD++GAAETGSGKTLAFG+PIL
Sbjct: 164 WNELRLHPRLMKAIHKLGFKEPTPIQKACVPAAAHQGKDVIGAAETGSGKTLAFGLPIL- 222
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+L E+ E+ SG+ E E E+ A T L +LI+APTRELA
Sbjct: 223 ---QRLLEEREKAESISGVNGE------EAAEKYATT--------GLLRSLIIAPTRELA 265
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+QV H+ K+ V+V +VGG+ EKQ R+L P I+VATPGRLWE + G HL
Sbjct: 266 LQVAKHLKAVAKHINVRVTAIVGGILPEKQERLLKARPEIVVATPGRLWELMSSGEKHLI 325
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
EL+ +++ V+DE DRM++SGHF EL++I+D + M+ S + K+ + V
Sbjct: 326 ELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISSEDNS----------KDAQNCV 375
Query: 393 TMTETSQP-RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
T++ + RQT VFSAT+ S LK+G + K++S D L+ I
Sbjct: 376 TVSSIQKKKRQTLVFSATVALSADFRKKLKRGSIQKKQLST---------DGLD----SI 422
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
L+E+ G+ I+DLT
Sbjct: 423 ETLSERAGMRPNAA-----------------------------------------IIDLT 441
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCS 570
+ + ES I C D+KD++LYY + H GRT+VFC SI++++ ++ +L +L +
Sbjct: 442 NPSILAAKIEESFIECTEDDKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVN 501
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
LHA M QR RLK +DRFR+ +N IL+ATDVAARGLDIPG+ V+HY +P ++E+Y+H
Sbjct: 502 VWTLHAQMQQRARLKAMDRFRENDNGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVH 561
Query: 631 RSGRTARANNEGLTVVLIESDEIPLKTKF-NLQEEENNEEEERAEADKEKTEDI--NVTV 687
RSGRTARA+ EG ++ LI E +KF +L + + + +R + ++ +++
Sbjct: 562 RSGRTARASAEGCSIALISPKET---SKFASLCKSFSKDNFQRFPVENSYMPEVLKRLSL 618
Query: 688 SSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKK 739
+ + K+ RK + + E S N + D TE S+E K +QKK
Sbjct: 619 ARQIDKITRKDSQEKAEKSWFDRNASSVD---LVTENYDSEEEQVNKCRQKK 667
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+LI+APTRELA+QV H+ K+ V+V +VGG+ EKQ R+L P I+VATPG L
Sbjct: 255 SLIIAPTRELALQVAKHLKAVAKHINVRVTAIVGGILPEKQERLLKARPEIVVATPGRL 313
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA+ EG ++ LI E + + S K + FP++ S + + KR+
Sbjct: 559 YVHRSGRTARASAEGCSIALISPKETSKFASLCKSFSKD-NFQRFPVENSYMPEVLKRLS 617
Query: 1300 LAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDD 1333
LA+ I+ + K + + + +W ++ A +D++ ++
Sbjct: 618 LARQIDKITRKDSQEKAEKSWFDRNASSVDLVTEN 652
>gi|324502072|gb|ADY40913.1| ATP-dependent RNA helicase DDX24 [Ascaris suum]
Length = 790
Score = 369 bits (946), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 212/557 (38%), Positives = 334/557 (59%), Gaps = 56/557 (10%)
Query: 712 TNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVD----------TSNNE 761
T +VN +E + + K K++K+++ S +++++E + TS +
Sbjct: 158 TGSDRSKVNGSESVSFADDGKPKQKKRKREQSLRESISEDIVENEEERVRGGCEPTSTSH 217
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
V ++ W+ F +P+ I++AL GF PT+IQ +V+PSA+ + D++GAAETGSGKTL
Sbjct: 218 TSEVDLSAWMPFCLPDEIMKALADLGFTKPTEIQKLVLPSAVRDKLDVLGAAETGSGKTL 277
Query: 822 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
A+ IP++ +++ + N+ E R+ L ALI
Sbjct: 278 AYAIPLIVRLLD-----------------------------AQNSMEDWTLQRH-LRALI 307
Query: 882 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
LAPTREL +Q++ HI KYT K +VGG+S +KQ R+L P I+VATPGR W
Sbjct: 308 LAPTRELVVQIRKHIDALIKYTNFKATSIVGGLSQQKQERLLKYRPEIVVATPGRFWSLA 367
Query: 942 QLG--HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+L K+ LV+DETDRM+E GHF EL+ IL+ + ++ + RQT VFSATL
Sbjct: 368 GNAPQGSYLANWQKLLCLVVDETDRMVEKGHFEELEFILEAIK-SDGNVKRQTLVFSATL 426
Query: 1000 T--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI-KSPKIVDLTEKIGITKTLTES 1056
T H LN+++ Q + K I RL +++ + K K+ D+T +G + L E+
Sbjct: 427 TFVHPAPRRLNIQQTQQMTTK-----EKIDRLIEIVGLRKERKVFDITRPLGTAEALLET 481
Query: 1057 KILCKH-DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP--LHASMNQ 1113
++ C + EKD+ + Y + ++PGRTL+F NSI + +RL +L L+ P+P LHA M Q
Sbjct: 482 RMNCSNLAEKDTNVVYLLTRYPGRTLIFMNSIDASRRLYGILVKLQHKPVPLLLHAKMIQ 541
Query: 1114 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
+QRLKNL++F + NS+LLATDVAARGLDI +EHVIHY VP+T+E+Y+HRSGRTARA++
Sbjct: 542 KQRLKNLEKFTEVPNSVLLATDVAARGLDIRQVEHVIHYQVPKTAELYVHRSGRTARASH 601
Query: 1174 EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES-VLSLIKKRIDLAKSIEYLESKI 1232
GLT+++++ + Y ++ +L ++ +LP FP+D + + + +K+R+ A +E LE ++
Sbjct: 602 RGLTVLMVDPQDAQYYRRICRNLNREHELPVFPVDSTHLFNALKERVKAATEVESLEHRM 661
Query: 1233 KK-NRPDNWLHRSGRTA 1248
KK + + W ++ R A
Sbjct: 662 KKISSRETWFEKTAREA 678
Score = 292 bits (747), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 196/571 (34%), Positives = 295/571 (51%), Gaps = 134/571 (23%)
Query: 95 TNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVD----------TSNNE 144
T +VN +E + + K K++K+++ S +++++E + TS +
Sbjct: 158 TGSDRSKVNGSESVSFADDGKPKQKKRKREQSLRESISEDIVENEEERVRGGCEPTSTSH 217
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
V ++ W+ F +P+ I++AL GF PT+IQ +V+PSA+ + D++GAAETGSGKTL
Sbjct: 218 TSEVDLSAWMPFCLPDEIMKALADLGFTKPTEIQKLVLPSAVRDKLDVLGAAETGSGKTL 277
Query: 205 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264
A+ IP++ +++ + N+ E R+ L ALI
Sbjct: 278 AYAIPLIVRLLD-----------------------------AQNSMEDWTLQRH-LRALI 307
Query: 265 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 324
LAPTREL +Q++ HI KYT K +VGG+S +KQ R+L P I+VATPGR W
Sbjct: 308 LAPTRELVVQIRKHIDALIKYTNFKATSIVGGLSQQKQERLLKYRPEIVVATPGRFWSLA 367
Query: 325 QLG--HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
+L K+ LV+DETDRM+E GHF EL+ IL+ +
Sbjct: 368 GNAPQGSYLANWQKLLCLVVDETDRMVEKGHFEELEFILEAIK----------------- 410
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
++ + RQT VFSATLT H LN+++ Q + K I RL
Sbjct: 411 ------------SDGNVKRQTLVFSATLTFVHPAPRRLNIQQTQQMTTK-----EKIDRL 453
Query: 441 QDLLNI-KSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTLCEEIQD 498
+++ + K K+ D+T +G + L E+++ C + EKD+ + Y + ++PGRTL
Sbjct: 454 IEIVGLRKERKVFDITRPLGTAEALLETRMNCSNLAEKDTNVVYLLTRYPGRTLI----- 508
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
+N +D + ++ IL K LQH
Sbjct: 509 FMN-----SIDASRRL--------YGILVK------------LQH--------------- 528
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
K PL LHA M Q+QRLKNL++F + NS+LLATDVAARGLDI +EHVIH
Sbjct: 529 ---------KPVPLLLHAKMIQKQRLKNLEKFTEVPNSVLLATDVAARGLDIRQVEHVIH 579
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIE 649
Y VP+T+E+Y+HRSGRTARA++ GLTV++++
Sbjct: 580 YQVPKTAELYVHRSGRTARASHRGLTVLMVD 610
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES-VLSLIKKRI 1298
++HRSGRTARA++ GLT+++++ + Y ++ +L ++ +LP FP+D + + + +K+R+
Sbjct: 589 YVHRSGRTARASHRGLTVLMVDPQDAQYYRRICRNLNREHELPVFPVDSTHLFNALKERV 648
Query: 1299 DLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIID 1332
A +E LE ++KK + + W EK A++ D+++D
Sbjct: 649 KAATEVESLEHRMKKISSRETWFEKTAREADLLLD 683
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 1348 RNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 1407
R+LR ALILAPTREL +Q++ HI KYT K +VGG+S +KQ R+L P I+
Sbjct: 301 RHLR----ALILAPTRELVVQIRKHIDALIKYTNFKATSIVGGLSQQKQERLLKYRPEIV 356
Query: 1408 VATPG 1412
VATPG
Sbjct: 357 VATPG 361
>gi|33150792|gb|AAP97274.1|AF145022_1 ATP-dependent RNA helicase [Homo sapiens]
Length = 454
Score = 369 bits (946), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 184/372 (49%), Positives = 257/372 (69%), Gaps = 6/372 (1%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L +L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPGR
Sbjct: 15 LLGRVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGR 74
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
LWE I+ H+HL L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT VFS
Sbjct: 75 LWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFS 134
Query: 997 ATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 1054
ATLT H + KK K K +K D +Q + PK++DLT +TLT
Sbjct: 135 ATLTLVHQAPARILHKKHTKKMDKTAKLDLL---MQKIGMRGKPKVIDLTRNEATVETLT 191
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 192 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 251
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NE
Sbjct: 252 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNE 311
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IK 1233
GL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI LA+ IE E + +
Sbjct: 312 GLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQ 371
Query: 1234 KNRPDNWLHRSG 1245
++W+ ++
Sbjct: 372 ACLHNSWIEQAA 383
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 170/396 (42%), Positives = 225/396 (56%), Gaps = 89/396 (22%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L +L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPGR
Sbjct: 15 LLGRVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGR 74
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
LWE I+ H+HL L ++ LV+DE DRM+E G
Sbjct: 75 LWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG--------------------------- 107
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSI 437
HF EL +L+ + ++ + RQT VFSATLT H + KK K K +K D
Sbjct: 108 -HFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDL-- 164
Query: 438 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497
L +KIG+
Sbjct: 165 ----------------LMQKIGMRG----------------------------------- 173
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +
Sbjct: 174 ------KPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCI 227
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617
KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVI
Sbjct: 228 KRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVI 287
Query: 618 HYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
HY VPRTSEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 288 HYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDV 323
Score = 77.4 bits (189), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 298 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 357
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 358 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 393
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 1358 ILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 19 VLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 75
>gi|299742573|ref|XP_001832577.2| ATP-dependent RNA helicase MAK5 [Coprinopsis cinerea okayama7#130]
gi|298405246|gb|EAU89326.2| ATP-dependent RNA helicase MAK5 [Coprinopsis cinerea okayama7#130]
Length = 759
Score = 368 bits (945), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 211/532 (39%), Positives = 305/532 (57%), Gaps = 91/532 (17%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ EW + + R+++ + F PT+IQ +P AL R D+VG A+TGSGKTLA+G+P
Sbjct: 151 LPEWHPLGLHPRLTRSIHARNFSKPTEIQKEAIPLALQGR-DVVGVAQTGSGKTLAYGLP 209
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL ++N+ + P+ K R L ALILAPTR
Sbjct: 210 ILHTLLNQ-KRPSS-------------------------------KRRRPLRALILAPTR 237
Query: 887 ELAIQVQNHILD-----------------AGKYTP-VKVACVVGGMSTEKQLRILNKCPH 928
ELA+QV H+ D A K P V VA +VGGMS +KQ R+L++
Sbjct: 238 ELALQVSQHLTDTLRAIEPQEDEGDEKKQAVKPPPHVSVAAIVGGMSAQKQKRVLDRGVD 297
Query: 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 988
+L+ATPGRLW+ + E+ + +LV+DE DRMIE+GHF EL NIL R+T+ E+S+
Sbjct: 298 VLIATPGRLWDIVSTDDNLANEIRNLRFLVLDEADRMIETGHFAELDNIL-RLTLRESSE 356
Query: 989 PR---------------------------------QTFVFSATLTHSLKNSLNLKKGQSK 1015
QTFVFSATL+ L+ +L +K S
Sbjct: 357 DEIPGIDNEKSEDEDTNMDDKADDKPSSAQKGTDLQTFVFSATLSKDLQRNLKRRKRSSG 416
Query: 1016 SKKVSKGDPS----IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
K K +PS L+ P+++DL+ K G+ TL E ++ C +KD YL+Y
Sbjct: 417 FSKKKKREPSSTLDDLLLRLDFRDPEPEVIDLSPKGGVVSTLQEGRVNCLTADKDVYLFY 476
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
F+L+HPGRTLVF +SI ++RL LL +L PLH+ M QRQRLKNLDRF+ NS+L
Sbjct: 477 FLLRHPGRTLVFLSSIDGIRRLNPLLELLNVKAFPLHSQMEQRQRLKNLDRFKSIPNSVL 536
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
LATDVAARGLDIP ++HVIH+ +PRT++ YIHR+GRTARA+ EG ++++ DE +
Sbjct: 537 LATDVAARGLDIPSVDHVIHFQIPRTADTYIHRNGRTARASREGFSMLMCAPDERRIVKA 596
Query: 1192 MFNSLEK-KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
+ NSL + + ++P+ ++ S+L +K+R+ LAK IE ++ ++KK + + NW+
Sbjct: 597 LMNSLGRDEAEIPELDLELSLLDRLKERVKLAKEIEGMQHRVKKGKFEKNWV 648
Score = 219 bits (557), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 138/371 (37%), Positives = 199/371 (53%), Gaps = 61/371 (16%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ EW + + R+++ + F PT+IQ +P AL R D+VG A+TGSGKTLA+G+P
Sbjct: 151 LPEWHPLGLHPRLTRSIHARNFSKPTEIQKEAIPLALQGR-DVVGVAQTGSGKTLAYGLP 209
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL ++N+ + P+ K R L ALILAPTR
Sbjct: 210 ILHTLLNQ-KRPS-------------------------------SKRRRPLRALILAPTR 237
Query: 270 ELAIQVQNHILD-----------------AGKYTP-VKVACVVGGMSTEKQLRILNKCPH 311
ELA+QV H+ D A K P V VA +VGGMS +KQ R+L++
Sbjct: 238 ELALQVSQHLTDTLRAIEPQEDEGDEKKQAVKPPPHVSVAAIVGGMSAQKQKRVLDRGVD 297
Query: 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 371
+L+ATPGRLW+ + E+ + +LV+DE DRMIE+GHF EL NIL R+T+ E+S+
Sbjct: 298 VLIATPGRLWDIVSTDDNLANEIRNLRFLVLDEADRMIETGHFAELDNIL-RLTLRESSE 356
Query: 372 PRQTMIESGHF-PELKNILDRVTMTETSQPR----QTFVFSATLTHSLKNSLNLKKGQSK 426
I++ E N+ D+ +S + QTFVFSATL+ L+ +L +K S
Sbjct: 357 DEIPGIDNEKSEDEDTNMDDKADDKPSSAQKGTDLQTFVFSATLSKDLQRNLKRRKRSSG 416
Query: 427 SKKVSKGDPS----IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482
K K +PS L+ P+++DL+ K G+ TL E ++ C +KD YL+Y
Sbjct: 417 FSKKKKREPSSTLDDLLLRLDFRDPEPEVIDLSPKGGVVSTLQEGRVNCLTADKDVYLFY 476
Query: 483 FILQHPGRTLC 493
F+L+HPGRTL
Sbjct: 477 FLLRHPGRTLV 487
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 83/148 (56%), Positives = 113/148 (76%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
P+++DL+ K G+ TL E ++ C +KD YL+YF+L+HPGRTLVF +SI ++RL LL
Sbjct: 443 PEVIDLSPKGGVVSTLQEGRVNCLTADKDVYLFYFLLRHPGRTLVFLSSIDGIRRLNPLL 502
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PLH+ M QRQRLKNLDRF+ NS+LLATDVAARGLDIP ++HVIH+ +PRT
Sbjct: 503 ELLNVKAFPLHSQMEQRQRLKNLDRFKSIPNSVLLATDVAARGLDIPSVDHVIHFQIPRT 562
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDE 652
++ YIHR+GRTARA+ EG ++++ DE
Sbjct: 563 ADTYIHRNGRTARASREGFSMLMCAPDE 590
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 18/77 (23%)
Query: 1356 ALILAPTRELAIQVQNHILD-----------------AGKYTP-VKVACVVGGMSTEKQL 1397
ALILAPTRELA+QV H+ D A K P V VA +VGGMS +KQ
Sbjct: 230 ALILAPTRELALQVSQHLTDTLRAIEPQEDEGDEKKQAVKPPPHVSVAAIVGGMSAQKQK 289
Query: 1398 RILNKCPHILVATPGAL 1414
R+L++ +L+ATPG L
Sbjct: 290 RVLDRGVDVLIATPGRL 306
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 68/99 (68%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKK 1296
D ++HR+GRTARA+ EG ++++ DE + + NSL + + ++P+ ++ S+L +K+
Sbjct: 564 DTYIHRNGRTARASREGFSMLMCAPDERRIVKALMNSLGRDEAEIPELDLELSLLDRLKE 623
Query: 1297 RIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDE 1334
R+ LAK IE ++ ++KK + + NW+++AA +++ +D +
Sbjct: 624 RVKLAKEIEGMQHRVKKGKFEKNWVKEAADALEVDLDSD 662
>gi|356520440|ref|XP_003528870.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Glycine max]
Length = 810
Score = 368 bits (944), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 201/498 (40%), Positives = 300/498 (60%), Gaps = 43/498 (8%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + +++A+ + GFK PT IQ +P+A KD+VGAAETGSGKTLAFG+PIL
Sbjct: 177 WNELRLHPLLLKAICKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQ 236
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ E ++ + + E EE E+ A+T L ALI+APTRELA
Sbjct: 237 RLLE------EREKAGNMVGERGEE-----PEKYAST--------GLLRALIIAPTRELA 277
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+QV +H+ K+ V+V +VGG+ EKQ R+L P I+V TPGRLWE + G HL
Sbjct: 278 LQVTDHLKAVAKHINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLV 337
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS-------------------QPR 990
EL+ +++ V+DE DRM+++GHF EL++I+D + M+ S + R
Sbjct: 338 ELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNNSAEDNSQHVQSCVTVSSYQRKKR 397
Query: 991 QTFVFSATLTHSLKNSLNLKKGQSKSKK-VSKGDPSIKRLQDLLNIKS-PKIVDLTEKIG 1048
QT VFSAT+ S LK+G K K+ ++ G SI+ L + ++S I+DLT
Sbjct: 398 QTLVFSATVALSSDFRKKLKRGSIKQKQSLTDGLNSIETLSERAGMRSNAAIIDLTNPSI 457
Query: 1049 ITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPL 1107
+ L ES I C+ ++KD+YLYY + H GRT+VFC SI++++ ++ +L +L + L
Sbjct: 458 LATKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTL 517
Query: 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
HA M QR RLK +DRFR+ N IL+ATDVAARGLDIPG+ V+HY +P ++E+Y+HRSGR
Sbjct: 518 HAQMQQRARLKAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGR 577
Query: 1168 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEY 1227
TARA+ EG ++ LI S + + + S K + FP++ S + + KR+ LA+ I+
Sbjct: 578 TARASAEGCSIALISSRDTSKFASLCKSFSKD-NFQRFPLENSYMPEVLKRLSLARQIDK 636
Query: 1228 LESKIKKNRPD-NWLHRS 1244
+ K + + + NW R+
Sbjct: 637 ITRKDSQEKAEKNWFDRN 654
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 192/500 (38%), Positives = 279/500 (55%), Gaps = 85/500 (17%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + + +++A+ + GFK PT IQ +P+A KD+VGAAETGSGKTLAFG+PIL
Sbjct: 177 WNELRLHPLLLKAICKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQ 236
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ E ++ + + E EE E+ A+T L ALI+APTRELA
Sbjct: 237 RLLE------EREKAGNMVGERGEE-----PEKYAST--------GLLRALIIAPTRELA 277
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+QV +H+ K+ V+V +VGG+ EKQ R+L P I+V TPGRLWE + G HL
Sbjct: 278 LQVTDHLKAVAKHINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLV 337
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
EL+ +++ V+DE DRM+++GHF EL++I+D + M+ S + +++ V
Sbjct: 338 ELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNNSAEDNS----------QHVQSCV 387
Query: 393 TMTETSQP-RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
T++ + RQT VFSAT+ S LK+G K K+ L D LN I
Sbjct: 388 TVSSYQRKKRQTLVFSATVALSSDFRKKLKRGSIKQKQ---------SLTDGLN----SI 434
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
L+E+ G+ + I+DLT
Sbjct: 435 ETLSERAGMRS-----------------------------------------NAAIIDLT 453
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCS 570
+ L ES I C+ ++KD+YLYY + H GRT+VFC SI++++ ++ +L +L +
Sbjct: 454 NPSILATKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGIN 513
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
LHA M QR RLK +DRFR+ N IL+ATDVAARGLDIPG+ V+HY +P ++E+Y+H
Sbjct: 514 VWTLHAQMQQRARLKAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVH 573
Query: 631 RSGRTARANNEGLTVVLIES 650
RSGRTARA+ EG ++ LI S
Sbjct: 574 RSGRTARASAEGCSIALISS 593
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+QV +H+ K+ V+V +VGG+ EKQ R+L P I+V TPG L
Sbjct: 267 ALIIAPTRELALQVTDHLKAVAKHINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRL 325
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA+ EG ++ LI S + + + S K + FP++ S + + KR+
Sbjct: 571 YVHRSGRTARASAEGCSIALISSRDTSKFASLCKSFSKD-NFQRFPLENSYMPEVLKRLS 629
Query: 1300 LAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIID----DENLIQPNQLLIFESRNLRYSW 1354
LA+ I+ + K + + + NW ++ + ++++ + +E + ++ + SR L+
Sbjct: 630 LARQIDKITRKDSQEKAEKNWFDRNSSSVELVTESYDSEEEQVNKHKQMKASSRQLKKLQ 689
Query: 1355 DALILAPTRELAIQVQNHILDAGK-YTPV 1382
+ L + +R L + +H AG TP+
Sbjct: 690 EDLKILISRPLQSKTFSHRYLAGAGVTPL 718
>gi|432096748|gb|ELK27327.1| ATP-dependent RNA helicase DDX24 [Myotis davidii]
Length = 790
Score = 367 bits (941), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 185/388 (47%), Positives = 266/388 (68%), Gaps = 8/388 (2%)
Query: 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 897
P ++++ + L+E+ + +E + +S K+ L L+L PTRELA+QV+ HI
Sbjct: 338 PKQDEDKEEKLDEQTGTLQQEFDVKSVTCKSHPKRP---LLGLVLTPTRELAVQVKQHID 394
Query: 898 DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYL 957
K+T +K A +VGGMST+KQ R+L++ P I++ATPGRLWE ++ H HL+ L ++ L
Sbjct: 395 AVAKFTGIKTAILVGGMSTQKQQRMLHRQPEIVIATPGRLWELVKEKHPHLSNLRQLRCL 454
Query: 958 VIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSK 1015
VIDE DRM+E GHF EL +L+ ++ ++ + RQT VFSATLT H + KK K
Sbjct: 455 VIDEADRMVEKGHFAELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPARVLHKKHTKK 514
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 1075
K +K D +Q + PK++DLT +TLTE+KI C++DEKD YLYYF++Q
Sbjct: 515 IDKTAKLD---ILMQKIGMRGKPKVIDLTRNEATVETLTETKIHCENDEKDLYLYYFLMQ 571
Query: 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
+PGRTLVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATD
Sbjct: 572 YPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATD 631
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195
VAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +
Sbjct: 632 VAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKT 691
Query: 1196 LEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
L+K D+P FP++ + +KK++ + K
Sbjct: 692 LKKDEDIPLFPVETKYMDAVKKQMKILK 719
Score = 315 bits (806), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 178/435 (40%), Positives = 248/435 (57%), Gaps = 92/435 (21%)
Query: 221 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 280
P ++++ + L+E+ + +E + +S K+ L L+L PTRELA+QV+ HI
Sbjct: 338 PKQDEDKEEKLDEQTGTLQQEFDVKSVTCKSHPKRP---LLGLVLTPTRELAVQVKQHID 394
Query: 281 DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYL 340
K+T +K A +VGGMST+KQ R+L++ P I++ATPGRLWE ++ H HL+ L ++ L
Sbjct: 395 AVAKFTGIKTAILVGGMSTQKQQRMLHRQPEIVIATPGRLWELVKEKHPHLSNLRQLRCL 454
Query: 341 VIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQP 400
VIDE DRM+E G HF EL +L+ ++ ++ +
Sbjct: 455 VIDEADRMVEKG----------------------------HFAELSQLLEMLSDSQYNPK 486
Query: 401 RQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458
RQT VFSATLT H + KK K K +K L+I L +KI
Sbjct: 487 RQTLVFSATLTLVHQAPARVLHKKHTKKIDKTAK-----------LDI-------LMQKI 528
Query: 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITK 518
G+ PK++DLT +
Sbjct: 529 GMRG-----------------------------------------KPKVIDLTRNEATVE 547
Query: 519 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 578
TLTE+KI C++DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 548 TLTETKIHCENDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACM 607
Query: 579 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 608 HQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 667
Query: 639 NNEGLTVVLIESDEI 653
NEGL+++LI +++
Sbjct: 668 TNEGLSLMLIGPEDV 682
Score = 73.6 bits (179), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+L++ P I++ATPG L
Sbjct: 376 GLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLHRQPEIVIATPGRL 434
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Query: 112 EPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGF 171
EPS Q KK +T+ L EV D ++ W +P ++RAL GF
Sbjct: 163 EPSQGATPQVPKKAKTW------LPEV-----RDQKADVSAWKDLFVPRPVLRALSALGF 211
Query: 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN-KLENPTEEDENDSG 230
PT IQ++ + A+ + DI+GAAETGSGKTLAF IP++ ++ +++ PT N +
Sbjct: 212 SAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMIHSVLQWQVKKPTPALSNTAA 271
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 729 EPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGF 788
EP Q KK +T+ L EV D ++ W +P ++RAL GF
Sbjct: 163 EPSQGATPQVPKKAKTW------LPEV-----RDQKADVSAWKDLFVPRPVLRALSALGF 211
Query: 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN-KLENPTEEDENDSG 847
PT IQ++ + A+ + DI+GAAETGSGKTLAF IP++ ++ +++ PT N +
Sbjct: 212 SAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMIHSVLQWQVKKPTPALSNTAA 271
Score = 61.2 bits (147), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 46/63 (73%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP++ + +KK++
Sbjct: 657 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVETKYMDAVKKQMK 716
Query: 1300 LAK 1302
+ K
Sbjct: 717 ILK 719
>gi|168023770|ref|XP_001764410.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684274|gb|EDQ70677.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 741
Score = 366 bits (939), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 202/521 (38%), Positives = 307/521 (58%), Gaps = 49/521 (9%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+ M+ W + + ++RAL + F PT IQ + +A KD++GAAETGSGKTLAFG
Sbjct: 103 IDMSAWAQLRLNPLLMRALMKLKFSKPTHIQEKCIAAAAYQGKDVIGAAETGSGKTLAFG 162
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
+PIL +L + E+ + SG ++ ++ K++ L ALI+ P
Sbjct: 163 LPIL----QRLLDDHEKIQRKSGFDKASK-----------------KQSGGPLRALIVTP 201
Query: 885 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
TRELA+QV +H+ A ++T V +VGGM+ +KQ R+L P I+V TPGRLWE + G
Sbjct: 202 TRELALQVCDHLRAAAQFTNFNVVPIVGGMALQKQQRLLRYQPQIVVGTPGRLWELMSAG 261
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT-----------------ETS 987
HL +L ++++ V+DE DRM+E GHF EL++I+D + T E
Sbjct: 262 EAHLLDLAQLSFFVLDEADRMVERGHFKELQSIMDMLPKTGPEDTTMKEDFTETIVIEPV 321
Query: 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK-GDPSIKRLQDLLNIK-SPKIVDLTE 1045
+ RQT VFSATL+ LK+G K SK + S+ L ++ + I+DLT
Sbjct: 322 KKRQTLVFSATLSLPPGFKKKLKRGFFNDKSTSKKNEYSVASLIQRAAMRDNAVIIDLTT 381
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSP 1104
K + + L ES I C+ +EKD+YLYY + H GRTLVFC SI++++ +T +L +L+ S
Sbjct: 382 KDVLARKLEESVIQCRDEEKDAYLYYILKVHGCGRTLVFCTSIAALRHVTAILRLLQVSV 441
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
PLHA M Q+QRLK +DRF+ ++ +++ATDVAARGLD+ GI VIHY +P ++E+Y+HR
Sbjct: 442 WPLHAQMQQKQRLKAMDRFKSADDCVMVATDVAARGLDVTGIRTVIHYQLPHSAEMYVHR 501
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
SGRTARA+ +G ++ +I + Y + +L+K LP FPID + + + KR+ LA
Sbjct: 502 SGRTARADTDGCSIAIISPSDRAKYNTLCRNLDKTNGLPSFPIDVTYIPAVLKRVSLAFQ 561
Query: 1225 IEYLESKIKKNRP-DNWLHRSGRTARANNEGLTLVLIESDE 1264
++ + K ++ + +W+ R N E L L + SD+
Sbjct: 562 VDRVLRKHQQFKAKQSWVKR-------NAEALELDVENSDD 595
Score = 327 bits (837), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 189/514 (36%), Positives = 284/514 (55%), Gaps = 90/514 (17%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+ M+ W + + ++RAL + F PT IQ + +A KD++GAAETGSGKTLAFG
Sbjct: 103 IDMSAWAQLRLNPLLMRALMKLKFSKPTHIQEKCIAAAAYQGKDVIGAAETGSGKTLAFG 162
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
+PIL +L + E+ + SG ++ ++ K++ L ALI+ P
Sbjct: 163 LPIL----QRLLDDHEKIQRKSGFDKASK-----------------KQSGGPLRALIVTP 201
Query: 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
TRELA+QV +H+ A ++T V +VGGM+ +KQ R+L P I+V TPGRLWE + G
Sbjct: 202 TRELALQVCDHLRAAAQFTNFNVVPIVGGMALQKQQRLLRYQPQIVVGTPGRLWELMSAG 261
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
HL +L ++++ V+DE DRM+E GHF EL++I+D M + P T +K
Sbjct: 262 EAHLLDLAQLSFFVLDEADRMVERGHFKELQSIMD---MLPKTGPEDTT--------MKE 310
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
+ E + RQT VFSAT L+L G KK+ +G N K
Sbjct: 311 DFTETIVIEPVKKRQTLVFSAT--------LSLPPG--FKKKLKRG---------FFNDK 351
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
S +K+ Y ++Q ++D + I
Sbjct: 352 S------------------------TSKKNEYSVASLIQRAA------MRD-----NAVI 376
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTM 566
+DLT K + + L ES I C+ +EKD+YLYY + H GRTLVFC SI++++ +T +L +
Sbjct: 377 IDLTTKDVLARKLEESVIQCRDEEKDAYLYYILKVHGCGRTLVFCTSIAALRHVTAILRL 436
Query: 567 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626
L+ S PLHA M Q+QRLK +DRF+ ++ +++ATDVAARGLD+ GI VIHY +P ++E
Sbjct: 437 LQVSVWPLHAQMQQKQRLKAMDRFKSADDCVMVATDVAARGLDVTGIRTVIHYQLPHSAE 496
Query: 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660
+Y+HRSGRTARA+ +G ++ +I + + K+N
Sbjct: 497 MYVHRSGRTARADTDGCSIAIISPSD---RAKYN 527
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV +H+ A ++T V +VGGM+ +KQ R+L P I+V TPG L
Sbjct: 196 ALIVTPTRELALQVCDHLRAAAQFTNFNVVPIVGGMALQKQQRLLRYQPQIVVGTPGRL 254
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA+ +G ++ +I + Y + +L+K LP FPID + + + KR+
Sbjct: 498 YVHRSGRTARADTDGCSIAIISPSDRAKYNTLCRNLDKTNGLPSFPIDVTYIPAVLKRVS 557
Query: 1300 LAKSIEYLESKIKKNRP-DNWLEKAAKDMDIIIDDEN 1335
LA ++ + K ++ + +W+++ A+ +++ +++ +
Sbjct: 558 LAFQVDRVLRKHQQFKAKQSWVKRNAEALELDVENSD 594
>gi|170595141|ref|XP_001902262.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158590158|gb|EDP28893.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 668
Score = 365 bits (938), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 212/524 (40%), Positives = 320/524 (61%), Gaps = 54/524 (10%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
N+E+ E+ E M+ W+ I +++A+ GF PT+IQ +V+PSA+ R D
Sbjct: 134 NEEIDELHGKKGE--IADMSGWINLYISNAVLKAIADMGFTEPTEIQKLVIPSAVRDRFD 191
Query: 809 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868
I+GAAETGSGKTLAFG+P++ ++ N S LE +
Sbjct: 192 IIGAAETGSGKTLAFGVPVVEHLL----------ANQSFLESSEQ--------------- 226
Query: 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928
+ + ALILAPTREL +Q++NHI KYTP KVA +VGG+S +KQ RIL P
Sbjct: 227 -----KKGIRALILAPTRELVMQIRNHIDALLKYTPFKVASIVGGLSLQKQERILKYVPE 281
Query: 929 ILVATPGRLWEFIQLGHFH--LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 986
I++ATPGRL + L++ + LV+DETDRMIE GHF +L++ILD + T
Sbjct: 282 IVIATPGRLLALMTSAEADSCLSDWSHLQCLVVDETDRMIEKGHFEDLQHILDTLR-KNT 340
Query: 987 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK--IVDLT 1044
S+ QTFVFSATLT++ + + K G + K+ D I RL ++ I+ K I+D+T
Sbjct: 341 SKKLQTFVFSATLTYT--HPASKKHGDVNADKIDT-DGKISRLIEITGIRKEKHRIIDIT 397
Query: 1045 EKIGITKTLTESKILCKHD-EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 1103
+ G KT+ E++I C + EKD+ L Y + ++ GRTLVF NS+ + +RL +L L+
Sbjct: 398 GERGTAKTVVEARINCNNLLEKDTNLIYLLNRYGGRTLVFTNSVDASRRLHGILKKLEHK 457
Query: 1104 PLPL--HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
P+PL HA M Q++RLKNL++F + +S+LLATDVAARGLDI ++HVIHY +P+T+E+Y
Sbjct: 458 PVPLMLHAKMMQKKRLKNLEKFAMEEDSVLLATDVAARGLDIRDVQHVIHYQIPKTAELY 517
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV---------DLPDFPIDESVL 1212
IHR GRTARA EGL ++LI+S ++ Y ++ +L + + + P FP+D L
Sbjct: 518 IHRCGRTARATKEGLAILLIDSQDVFYYQRICRNLNRVLTKKRLNLEKEFPIFPLDSPEL 577
Query: 1213 -SLIKKRIDLAKSIEYLESKIKK-NRPDNWLHRSGRTARANNEG 1254
+++KKR+++A ++E L+ ++KK + W ++ +A + +G
Sbjct: 578 YAVLKKRVEVATAVEALDHRLKKMHSKQTWFEKAAASADLDLDG 621
Score = 277 bits (708), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 190/527 (36%), Positives = 272/527 (51%), Gaps = 123/527 (23%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
N+E+ E+ E M+ W+ I +++A+ GF PT+IQ +V+PSA+ R D
Sbjct: 134 NEEIDELHGKKGE--IADMSGWINLYISNAVLKAIADMGFTEPTEIQKLVIPSAVRDRFD 191
Query: 192 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251
I+GAAETGSGKTLAFG+P++ ++ N S LE +
Sbjct: 192 IIGAAETGSGKTLAFGVPVVEHLL----------ANQSFLESSEQ--------------- 226
Query: 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311
+ + ALILAPTREL +Q++NHI KYTP KVA +VGG+S +KQ RIL P
Sbjct: 227 -----KKGIRALILAPTRELVMQIRNHIDALLKYTPFKVASIVGGLSLQKQERILKYVPE 281
Query: 312 ILVATPGRLWEFIQLGHFH--LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
I++ATPGRL + L++ + LV+DETDRMIE GHF +L++ILD +
Sbjct: 282 IVIATPGRLLALMTSAEADSCLSDWSHLQCLVVDETDRMIEKGHFEDLQHILDTLR---- 337
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 429
KN TS+ QTFVFSATLT++ + + K G + K
Sbjct: 338 ----------------KN---------TSKKLQTFVFSATLTYT--HPASKKHGDVNADK 370
Query: 430 VSKGDPSIKRLQDLLNIKSPK--IVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQ 486
+ D I RL ++ I+ K I+D+T + G KT+ E++I C + EKD+ L Y + +
Sbjct: 371 IDT-DGKISRLIEITGIRKEKHRIIDITGERGTAKTVVEARINCNNLLEKDTNLIYLLNR 429
Query: 487 HPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 546
+ GRTL T + ++ L IL K L+H
Sbjct: 430 YGGRTLV----------------FTNSVDASRRL--HGILKK------------LEHKPV 459
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
L+ + KRL KNL++F + +S+LLATDVAAR
Sbjct: 460 PLMLHAKMMQKKRL------------------------KNLEKFAMEEDSVLLATDVAAR 495
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
GLDI ++HVIHY +P+T+E+YIHR GRTARA EGL ++LI+S ++
Sbjct: 496 GLDIRDVQHVIHYQIPKTAELYIHRCGRTARATKEGLAILLIDSQDV 542
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 48/71 (67%)
Query: 1344 IFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
ES + ALILAPTREL +Q++NHI KYTP KVA +VGG+S +KQ RIL
Sbjct: 220 FLESSEQKKGIRALILAPTRELVMQIRNHIDALLKYTPFKVASIVGGLSLQKQERILKYV 279
Query: 1404 PHILVATPGAL 1414
P I++ATPG L
Sbjct: 280 PEIVIATPGRL 290
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 11/104 (10%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV---------DLPDFPIDESV 1290
++HR GRTARA EGL ++LI+S ++ Y ++ +L + + + P FP+D
Sbjct: 517 YIHRCGRTARATKEGLAILLIDSQDVFYYQRICRNLNRVLTKKRLNLEKEFPIFPLDSPE 576
Query: 1291 L-SLIKKRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIID 1332
L +++KKR+++A ++E L+ ++KK + W EKAA D+ +D
Sbjct: 577 LYAVLKKRVEVATAVEALDHRLKKMHSKQTWFEKAAASADLDLD 620
>gi|414586362|tpg|DAA36933.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 842
Score = 365 bits (937), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 214/549 (38%), Positives = 316/549 (57%), Gaps = 59/549 (10%)
Query: 746 TSANKELLEVDTSN---NEDMFVQMAE-----WVKFNIPETIIRALYQKGFKTPTKIQSM 797
S E ++ DT N NED + + E W + + +++A+ + GFK PT IQ
Sbjct: 179 ASDKAEDMQDDTENMEQNEDDELILGEDDVSAWRELRLHPLLLKAMRRLGFKEPTPIQKS 238
Query: 798 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 857
P+A KD++GAAETGSGKTLAFG+P+L ++ + E T + D E
Sbjct: 239 CFPAAAHRGKDVIGAAETGSGKTLAFGLPVLQRLLEEREKATRLQQED-----------E 287
Query: 858 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE 917
++EE S + L ALIL PTRELA QV +H+ D K+ + V +VGG+S E
Sbjct: 288 KMEERSCGSP---------LRALILTPTRELAKQVCDHLKDVAKFLGIHVVPIVGGLSME 338
Query: 918 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 977
KQ R+L K P I+V TPGRLWE + + + HL EL+ +++ ++DE DRMIE GHF EL++I
Sbjct: 339 KQERLLKKKPEIVVGTPGRLWEHMSMNNQHLVELHSLSFFILDEADRMIERGHFRELQSI 398
Query: 978 LDRVTMTETS-------------------QPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
++ + +T S + RQTFVFSATL S LK+G S SK
Sbjct: 399 IEMLPLTNGSDEQAARTMPNCETVPILQIKKRQTFVFSATLALSSNFRKKLKRGLSTSKA 458
Query: 1019 VSKGD-PSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
+ D SI+ L +KS +IVDLT+ + + L ES I C ++KD+YLYY + H
Sbjct: 459 STPDDVSSIEALSKQAGMKSNAEIVDLTKASILPEKLEESFIECSEEDKDAYLYYILSVH 518
Query: 1077 P-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
GRT++FC SI++++ ++ +L +L + L HA M QR R+K +DRFR+ NSIL+ATD
Sbjct: 519 GQGRTIIFCTSIAALRHISSILRILGINVLTNHAQMQQRARMKAVDRFRESENSILVATD 578
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195
ARG+D + VIHY +P ++++YIHRSGRTAR + G ++ LI + + + S
Sbjct: 579 GFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSLAGCSIALISPTDKSRFYSLCKS 638
Query: 1196 LEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKI-KKNRPDNWLHRSGRTARANNEG 1254
L K+ +L FP+D + +S + R+ LA+ I+ + K ++N +WL R N E
Sbjct: 639 LSKE-NLQQFPVDHTYMSGVMNRLSLARQIDKIARKTSQENANKSWLQR-------NAES 690
Query: 1255 LTLVLIESD 1263
+ L+L SD
Sbjct: 691 MGLILDTSD 699
Score = 319 bits (817), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 195/531 (36%), Positives = 284/531 (53%), Gaps = 96/531 (18%)
Query: 129 TSANKELLEVDTSN---NEDMFVQMAE-----WVKFNIPETIIRALYQKGFKTPTKIQSM 180
S E ++ DT N NED + + E W + + +++A+ + GFK PT IQ
Sbjct: 179 ASDKAEDMQDDTENMEQNEDDELILGEDDVSAWRELRLHPLLLKAMRRLGFKEPTPIQKS 238
Query: 181 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 240
P+A KD++GAAETGSGKTLAFG+P+L ++ + E T + D E
Sbjct: 239 CFPAAAHRGKDVIGAAETGSGKTLAFGLPVLQRLLEEREKATRLQQED-----------E 287
Query: 241 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE 300
++EE S + L ALIL PTRELA QV +H+ D K+ + V +VGG+S E
Sbjct: 288 KMEERSCGSP---------LRALILTPTRELAKQVCDHLKDVAKFLGIHVVPIVGGLSME 338
Query: 301 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 360
KQ R+L K P I+V TPGRLWE + + + HL EL+ +++ ++DE DRMIE GHF EL++I
Sbjct: 339 KQERLLKKKPEIVVGTPGRLWEHMSMNNQHLVELHSLSFFILDEADRMIERGHFRELQSI 398
Query: 361 LDRVTMTETS--QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 418
++ + +T S Q +TM P L+ + RQTFVFSATL S
Sbjct: 399 IEMLPLTNGSDEQAARTMPNCETVPILQ-----------IKKRQTFVFSATLALSSNFRK 447
Query: 419 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 478
LK+G S SK + D S I L+++ G+
Sbjct: 448 KLKRGLSTSKASTPDDVS-------------SIEALSKQAGMKS---------------- 478
Query: 479 YLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 538
+ +IVDLT+ + + L ES I C ++KD+YLYY
Sbjct: 479 -------------------------NAEIVDLTKASILPEKLEESFIECSEEDKDAYLYY 513
Query: 539 FILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597
+ H GRT++FC SI++++ ++ +L +L + L HA M QR R+K +DRFR+ NSI
Sbjct: 514 ILSVHGQGRTIIFCTSIAALRHISSILRILGINVLTNHAQMQQRARMKAVDRFRESENSI 573
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
L+ATD ARG+D + VIHY +P ++++YIHRSGRTAR + G ++ LI
Sbjct: 574 LVATDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSLAGCSIALI 624
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 44/70 (62%)
Query: 1345 FESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 1404
E R+ ALIL PTRELA QV +H+ D K+ + V +VGG+S EKQ R+L K P
Sbjct: 289 MEERSCGSPLRALILTPTRELAKQVCDHLKDVAKFLGIHVVPIVGGLSMEKQERLLKKKP 348
Query: 1405 HILVATPGAL 1414
I+V TPG L
Sbjct: 349 EIVVGTPGRL 358
>gi|293332967|ref|NP_001169277.1| uncharacterized protein LOC100383140 [Zea mays]
gi|224028341|gb|ACN33246.1| unknown [Zea mays]
Length = 842
Score = 365 bits (937), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 214/549 (38%), Positives = 316/549 (57%), Gaps = 59/549 (10%)
Query: 746 TSANKELLEVDTSN---NEDMFVQMAE-----WVKFNIPETIIRALYQKGFKTPTKIQSM 797
S E ++ DT N NED + + E W + + +++A+ + GFK PT IQ
Sbjct: 179 ASDKAEDMQDDTENMEQNEDDELILGEDDVSAWRELRLHPLLLKAMRRLGFKEPTPIQKS 238
Query: 798 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 857
P+A KD++GAAETGSGKTLAFG+P+L ++ + E T + D E
Sbjct: 239 CFPAAAHRGKDVIGAAETGSGKTLAFGLPVLQRLLEEREKATRLQQED-----------E 287
Query: 858 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE 917
++EE S + L ALIL PTRELA QV +H+ D K+ + V +VGG+S E
Sbjct: 288 KMEERSCGSP---------LRALILTPTRELAKQVCDHLKDVAKFLGIHVVPIVGGLSME 338
Query: 918 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 977
KQ R+L K P I+V TPGRLWE + + + HL EL+ +++ ++DE DRMIE GHF EL++I
Sbjct: 339 KQERLLKKKPEIVVGTPGRLWEHMSMNNQHLVELHSLSFFILDEADRMIERGHFRELQSI 398
Query: 978 LDRVTMTETS-------------------QPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
++ + +T S + RQTFVFSATL S LK+G S SK
Sbjct: 399 IEMLPLTNGSGEQAARTMPNCETVPILQIKKRQTFVFSATLALSSNFRKKLKRGLSTSKA 458
Query: 1019 VSKGD-PSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
+ D SI+ L +KS +IVDLT+ + + L ES I C ++KD+YLYY + H
Sbjct: 459 STPDDVSSIEALSKQAGMKSNAEIVDLTKASILPEKLEESFIECSEEDKDAYLYYILSVH 518
Query: 1077 P-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
GRT++FC SI++++ ++ +L +L + L HA M QR R+K +DRFR+ NSIL+ATD
Sbjct: 519 GQGRTIIFCTSIAALRHISSILRILGINVLTNHAQMQQRARMKAVDRFRESENSILVATD 578
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195
ARG+D + VIHY +P ++++YIHRSGRTAR + G ++ LI + + + S
Sbjct: 579 GFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSLAGCSIALISPTDKSRFYSLCKS 638
Query: 1196 LEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKI-KKNRPDNWLHRSGRTARANNEG 1254
L K+ +L FP+D + +S + R+ LA+ I+ + K ++N +WL R N E
Sbjct: 639 LSKE-NLQQFPVDHTYMSGVMNRLSLARQIDKIARKTSQENANKSWLQR-------NAES 690
Query: 1255 LTLVLIESD 1263
+ L+L SD
Sbjct: 691 MGLILDTSD 699
Score = 319 bits (817), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 195/531 (36%), Positives = 284/531 (53%), Gaps = 96/531 (18%)
Query: 129 TSANKELLEVDTSN---NEDMFVQMAE-----WVKFNIPETIIRALYQKGFKTPTKIQSM 180
S E ++ DT N NED + + E W + + +++A+ + GFK PT IQ
Sbjct: 179 ASDKAEDMQDDTENMEQNEDDELILGEDDVSAWRELRLHPLLLKAMRRLGFKEPTPIQKS 238
Query: 181 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 240
P+A KD++GAAETGSGKTLAFG+P+L ++ + E T + D E
Sbjct: 239 CFPAAAHRGKDVIGAAETGSGKTLAFGLPVLQRLLEEREKATRLQQED-----------E 287
Query: 241 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE 300
++EE S + L ALIL PTRELA QV +H+ D K+ + V +VGG+S E
Sbjct: 288 KMEERSCGSP---------LRALILTPTRELAKQVCDHLKDVAKFLGIHVVPIVGGLSME 338
Query: 301 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 360
KQ R+L K P I+V TPGRLWE + + + HL EL+ +++ ++DE DRMIE GHF EL++I
Sbjct: 339 KQERLLKKKPEIVVGTPGRLWEHMSMNNQHLVELHSLSFFILDEADRMIERGHFRELQSI 398
Query: 361 LDRVTMTETS--QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 418
++ + +T S Q +TM P L+ + RQTFVFSATL S
Sbjct: 399 IEMLPLTNGSGEQAARTMPNCETVPILQ-----------IKKRQTFVFSATLALSSNFRK 447
Query: 419 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 478
LK+G S SK + D S I L+++ G+
Sbjct: 448 KLKRGLSTSKASTPDDVS-------------SIEALSKQAGMKS---------------- 478
Query: 479 YLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 538
+ +IVDLT+ + + L ES I C ++KD+YLYY
Sbjct: 479 -------------------------NAEIVDLTKASILPEKLEESFIECSEEDKDAYLYY 513
Query: 539 FILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597
+ H GRT++FC SI++++ ++ +L +L + L HA M QR R+K +DRFR+ NSI
Sbjct: 514 ILSVHGQGRTIIFCTSIAALRHISSILRILGINVLTNHAQMQQRARMKAVDRFRESENSI 573
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
L+ATD ARG+D + VIHY +P ++++YIHRSGRTAR + G ++ LI
Sbjct: 574 LVATDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSLAGCSIALI 624
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 44/70 (62%)
Query: 1345 FESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 1404
E R+ ALIL PTRELA QV +H+ D K+ + V +VGG+S EKQ R+L K P
Sbjct: 289 MEERSCGSPLRALILTPTRELAKQVCDHLKDVAKFLGIHVVPIVGGLSMEKQERLLKKKP 348
Query: 1405 HILVATPGAL 1414
I+V TPG L
Sbjct: 349 EIVVGTPGRL 358
>gi|17507641|ref|NP_491652.1| Protein F55F8.2, isoform a [Caenorhabditis elegans]
gi|351063669|emb|CCD71883.1| Protein F55F8.2, isoform a [Caenorhabditis elegans]
Length = 746
Score = 364 bits (934), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 209/492 (42%), Positives = 302/492 (61%), Gaps = 41/492 (8%)
Query: 767 MAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
++ W +F +P ++ A+ Q GF PT+IQS V+P+A+ R+D++GAAETGSGKTLAFGI
Sbjct: 153 ISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGI 212
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
P++ ++ E +DS E E V+ R ALI+APT
Sbjct: 213 PLVARLL--------ESSDDSQETESTE----------------VRGPR----ALIVAPT 244
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGRLWEFIQ-- 942
REL IQ+ HI T + +VGG++ KQ RI+++ P I+VATPGRLW +Q
Sbjct: 245 RELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRLWAMMQEA 304
Query: 943 -LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001
G F L E + LV+DETDRM+E G+F EL +IL+++ + QT VFSATLT
Sbjct: 305 ETGEF-LAEWKDLKCLVVDETDRMVEEGYFAELTHILNKIHEESEKEKLQTLVFSATLTF 363
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKIL 1059
+ + ++ + + K K I+RL L ++ K++DLT ++G L E++I
Sbjct: 364 A--KAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHKVIDLTRQMGTAGCLVEARIN 421
Query: 1060 CKHD-EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
C + EKD+ L Y + ++PGRT+VF NSI + +RL +L + P+ LHA M Q+QRLK
Sbjct: 422 CGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAARRLYSVLKSVNIDPMILHAKMIQKQRLK 481
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
NL++F + N++LLATDVAARGLDI GI+HVIHY VP+ EIYIHRSGRTARA++ GLT+
Sbjct: 482 NLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPKKVEIYIHRSGRTARASHRGLTV 541
Query: 1179 VLIESDEIPLYIKMFNSLEKKVDLPDFPID-ESVLSLIKKRIDLAKSIEYLESKIKKNR- 1236
VL++ Y+K+ L + DL FPID E +++ IKKR+ LA I+ L + KK +
Sbjct: 542 VLVDPPSRQFYMKLCKGLNRMQDLNVFPIDFEPLMNAIKKRVRLASEIDSLGFRCKKIKM 601
Query: 1237 PDNWLHRSGRTA 1248
++W ++ R A
Sbjct: 602 SESWFEKAARAA 613
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 187/351 (53%), Gaps = 67/351 (19%)
Query: 150 MAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
++ W +F +P ++ A+ Q GF PT+IQS V+P+A+ R+D++GAAETGSGKTLAFGI
Sbjct: 153 ISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGI 212
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
P++ ++ E +DS E E V+ R ALI+APT
Sbjct: 213 PLVARLL--------ESSDDSQETESTE----------------VRGPR----ALIVAPT 244
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGRLWEFIQ-- 325
REL IQ+ HI T + +VGG++ KQ RI+++ P I+VATPGRLW +Q
Sbjct: 245 RELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRLWAMMQEA 304
Query: 326 -LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
G F L E + LV+DETDRM+E G+F EL +IL+++ H
Sbjct: 305 ETGEF-LAEWKDLKCLVVDETDRMVEEGYFAELTHILNKI----------------HEES 347
Query: 385 LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
K L QT VFSATLT + + ++ + + K K I+RL L
Sbjct: 348 EKEKL------------QTLVFSATLTFA--KAQDVAEEEKKKAKELSSQQKIQRLIKLT 393
Query: 445 NIKS--PKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTL 492
++ K++DLT ++G L E++I C + EKD+ L Y + ++PGRT+
Sbjct: 394 GLRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTI 444
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
Query: 506 KIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
K++DLT ++G L E++I C + EKD+ L Y + ++PGRT+VF NSI + +RL +L
Sbjct: 401 KVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAARRLYSVL 460
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+ P+ LHA M Q+QRLKNL++F + N++LLATDVAARGLDI GI+HVIHY VP+
Sbjct: 461 KSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPKK 520
Query: 625 SEIYIHRSGRTARANNEGLTVVLIE 649
EIYIHRSGRTARA++ GLTVVL++
Sbjct: 521 VEIYIHRSGRTARASHRGLTVVLVD 545
Score = 77.4 bits (189), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID-ESVLSLIKKRI 1298
++HRSGRTARA++ GLT+VL++ Y+K+ L + DL FPID E +++ IKKR+
Sbjct: 524 YIHRSGRTARASHRGLTVVLVDPPSRQFYMKLCKGLNRMQDLNVFPIDFEPLMNAIKKRV 583
Query: 1299 DLAKSIEYLESKIKKNR-PDNWLEKAAKDMDIIIDD 1333
LA I+ L + KK + ++W EKAA+ D+ D+
Sbjct: 584 RLASEIDSLGFRCKKIKMSESWFEKAARAADLDYDE 619
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGAL 1414
ALI+APTREL IQ+ HI T + +VGG++ KQ RI+++ P I+VATPG L
Sbjct: 238 ALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRL 297
>gi|158289761|ref|XP_311419.4| AGAP010702-PA [Anopheles gambiae str. PEST]
gi|157018482|gb|EAA07044.4| AGAP010702-PA [Anopheles gambiae str. PEST]
Length = 739
Score = 363 bits (933), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 199/474 (41%), Positives = 279/474 (58%), Gaps = 69/474 (14%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
WV+ + E I+RAL KGFK PT+IQ+ +P A+ R+D++GAAETGSGKTLAFGIP+L
Sbjct: 208 WVQLGVSEPIVRALADKGFKVPTEIQNKSLPVAIYGRRDLLGAAETGSGKTLAFGIPMLE 267
Query: 830 GIVN--KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK--------LYA 879
GI++ K + P +D ++ + +E+ +E EE++ E +K N LY
Sbjct: 268 GIMHLKKGKKPVADDSSEHEMTPPSED-MEVTEEDAKVFAEEGRKLGNSSAAPEDKPLYG 326
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LIL PTRELA+Q+ +H+ KYT + +A V GG++T KQ R+L KCP I++ATPGRLWE
Sbjct: 327 LILTPTRELAVQINDHLKAVAKYTDINIATVFGGLATVKQERMLRKCPEIVIATPGRLWE 386
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP-RQTFVFSAT 998
++ + HL+++ I YLVIDETDRM+E GHF ELK +L + E ++ R+ ++FSAT
Sbjct: 387 LVKSENHHLSKVTDIRYLVIDETDRMLEKGHFEELKELLALINANEEAKKLRRNYIFSAT 446
Query: 999 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL---LNIKSPKIVDLTEKIGITKTLTE 1055
LT + ++K+ KSKK K P +R+ +L + + PKIVDLT+ G +TLTE
Sbjct: 447 LTMDHEMPTHIKRHPKKSKKALKLTPG-QRMANLIETIGMTDPKIVDLTQDHGTARTLTE 505
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
S+ILC+ + KD YLYYF+ +HPGRTLVFCNSI VKRL L L C PL L SM QRQ
Sbjct: 506 SRILCQMEHKDFYLYYFLDRHPGRTLVFCNSIDCVKRLVSLFDYLNCQPLSLFGSMQQRQ 565
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
RLKNL+R
Sbjct: 566 RLKNLER----------------------------------------------------- 572
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
LT++LI E+ Y+K+ L + DLP +P E V+ +K+R+ LA+ IE ++
Sbjct: 573 LTVLLIGPSEVRDYVKLNQDLGRTEDLPLYPTSERVMRQVKERVTLARQIERMD 626
Score = 321 bits (823), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 190/488 (38%), Positives = 262/488 (53%), Gaps = 99/488 (20%)
Query: 114 SSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKT 173
SS KL+Q + K+ T + + + S + WV+ + E I+RAL KGFK
Sbjct: 174 SSTKLQQNQSKQNNATKVSDKPVPEPYSTAD-----YTAWVQLGVSEPIVRALADKGFKV 228
Query: 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN--KLENPTEEDENDSGL 231
PT+IQ+ +P A+ R+D++GAAETGSGKTLAFGIP+L GI++ K + P +D ++ +
Sbjct: 229 PTEIQNKSLPVAIYGRRDLLGAAETGSGKTLAFGIPMLEGIMHLKKGKKPVADDSSEHEM 288
Query: 232 EEEAEEVLEELEEESANTTEFVKKTRNK--------LYALILAPTRELAIQVQNHILDAG 283
+E+ +E EE++ E +K N LY LIL PTRELA+Q+ +H+
Sbjct: 289 TPPSED-MEVTEEDAKVFAEEGRKLGNSSAAPEDKPLYGLILTPTRELAVQINDHLKAVA 347
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
KYT + +A V GG++T KQ R+L KCP I++ATPGRLWE ++ + HL+++ I YLVID
Sbjct: 348 KYTDINIATVFGGLATVKQERMLRKCPEIVIATPGRLWELVKSENHHLSKVTDIRYLVID 407
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQP-RQ 402
ETDRM+E G HF ELK +L + E ++ R+
Sbjct: 408 ETDRMLEKG----------------------------HFEELKELLALINANEEAKKLRR 439
Query: 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
++FSATLT + ++K+ KSKK K P ++ +L E IG+T
Sbjct: 440 NYIFSATLTMDHEMPTHIKRHPKKSKKALKLTPG------------QRMANLIETIGMT- 486
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
PKIVDLT+ G +TLTE
Sbjct: 487 -----------------------------------------DPKIVDLTQDHGTARTLTE 505
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
S+ILC+ + KD YLYYF+ +HPGRTLVFCNSI VKRL L L C PL L SM QRQ
Sbjct: 506 SRILCQMEHKDFYLYYFLDRHPGRTLVFCNSIDCVKRLVSLFDYLNCQPLSLFGSMQQRQ 565
Query: 583 RLKNLDRF 590
RLKNL+R
Sbjct: 566 RLKNLERL 573
Score = 76.6 bits (187), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL PTRELA+Q+ +H+ KYT + +A V GG++T KQ R+L KCP I++ATPG L
Sbjct: 326 GLILTPTRELAVQINDHLKAVAKYTDINIATVFGGLATVKQERMLRKCPEIVIATPGRL 384
Score = 45.8 bits (107), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 1251 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-S 1309
N E LT++LI E+ Y+K+ L + DLP +P E V+ +K+R+ LA+ IE ++
Sbjct: 569 NLERLTVLLIGPSEVRDYVKLNQDLGRTEDLPLYPTSERVMRQVKERVTLARQIERMDLQ 628
Query: 1310 KIKKNRPDNWLEKAAKDM 1327
+ ++ +W ++ AK+
Sbjct: 629 QRREGATRSWEDQLAKEF 646
>gi|355683260|gb|AER97066.1| DEAD box polypeptide 24 [Mustela putorius furo]
Length = 702
Score = 363 bits (932), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 183/361 (50%), Positives = 254/361 (70%), Gaps = 7/361 (1%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMS +KQ R+LN+ P I+VAT
Sbjct: 245 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSAQKQQRMLNRQPEIVVAT 304
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H HL+ L ++ LV+DE DRM+E GHF EL +L+ ++ ++ + RQT
Sbjct: 305 PGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLSDSQYNPKRQTL 364
Query: 994 VFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGIT 1050
+FSATLT H + KK K K +K D ++++ ++ PK++DLT
Sbjct: 365 IFSATLTLVHQAPARILHKKHIKKIDKTAKLDLLVQKI----GMRGKPKVIDLTRNEATV 420
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
+TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA
Sbjct: 421 ETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHAC 480
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTAR
Sbjct: 481 MHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTAR 540
Query: 1171 ANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLES 1230
A NEGL+L+LI +++ + K++ +L+K D+P FP+ + +K+RI LA+ IE E
Sbjct: 541 ATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIHLARQIEKAEY 600
Query: 1231 K 1231
+
Sbjct: 601 R 601
Score = 209 bits (532), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 121/149 (81%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL
Sbjct: 408 PKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLL 467
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 468 KVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 527
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
SEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 528 SEIYVHRSGRTARATNEGLSLMLIGPEDV 556
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 143/239 (59%), Gaps = 35/239 (14%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMS +KQ R+LN+ P I+VAT
Sbjct: 245 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSAQKQQRMLNRQPEIVVAT 304
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE I+ H HL+ L ++ LV+DE DRM+E GHF EL +L+ ++
Sbjct: 305 PGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLS----------- 353
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGD 434
+S + P+ RQT +FSATLT H + KK K K +K D
Sbjct: 354 -DSQYNPK----------------RQTLIFSATLTLVHQAPARILHKKHIKKIDKTAKLD 396
Query: 435 PSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
+++ + ++ PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGRTL
Sbjct: 397 LLVQK----IGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTL 451
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMS +KQ R+LN+ P I+VATPG L
Sbjct: 250 GLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSAQKQQRMLNRQPEIVVATPGRL 308
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 531 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIH 590
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 591 LARQIEKAEYRNFQACLHNSWIEQ 614
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D + W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 50 DQKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 109
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 110 AFAIPMIHAVLQ 121
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D + W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 50 DQKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 109
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 110 AFAIPMIHAVLQ 121
>gi|326526415|dbj|BAJ97224.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 872
Score = 363 bits (932), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 209/521 (40%), Positives = 303/521 (58%), Gaps = 50/521 (9%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
++ W++ + +I+A+++ GF PT IQ +P+ KD++GAAETGSGKTLAFG+
Sbjct: 236 ELYAWLELRLHPLLIKAMHRLGFNEPTPIQKACIPAGAHQGKDVIGAAETGSGKTLAFGL 295
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
PIL ++ + E T D E+EAE T L ALIL PT
Sbjct: 296 PILQRLLEEREKTTRLHVED---EKEAEG----------------SSTGGPLRALILTPT 336
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
RELA QV +H+ +A K+ + V +VGG+S EKQ R+L K P I+V TPGRLWE + G+
Sbjct: 337 RELAKQVCDHLKEAAKFLGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRLWELMSSGN 396
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS------------------ 987
HL EL+ +++ V+DE DRMIE GHF E+++I++ + ++ +S
Sbjct: 397 QHLVELHSLSFFVLDEADRMIERGHFKEVQSIIEMLPLSNSSDEQTVKATSSCETVANLQ 456
Query: 988 -QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQDLLNIK-SPKIVDLT 1044
+ RQTFVFSATL S LK+G S SK + D SI+ L +K + +IVDLT
Sbjct: 457 IKKRQTFVFSATLALSANFRKKLKRGLSTSKASTAEDLSSIEELSKQAGMKPNAEIVDLT 516
Query: 1045 EKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCS 1103
+ + L ES I C D+KD+ LYY + H GRT+VFC SIS+++ ++ LL L +
Sbjct: 517 NASILPEKLEESFIECSDDDKDANLYYILSVHGQGRTIVFCTSISALRHISSLLRTLGIN 576
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
L HA M QR R+K +DRFR+ NS+L+ATD ARG+D + VIHY +P +S++YIH
Sbjct: 577 VLTNHAQMQQRARMKAVDRFREGENSVLVATDGFARGMDFDNVRTVIHYQLPHSSDVYIH 636
Query: 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
RSGRTAR + G ++ LI + + + S K+ +L FP+D++ + I R+ LA+
Sbjct: 637 RSGRTARKSLTGCSIALISPADKAKFYSLCKSFSKE-NLQQFPVDQAYMPAIMNRLSLAR 695
Query: 1224 SIEYLESK-IKKNRPDNWLHRSGRTARANNEGLTLVLIESD 1263
I+ + SK K+N +WL R N E + L+L SD
Sbjct: 696 QIDKISSKNSKENANKSWLQR-------NAESMGLILEASD 729
Score = 316 bits (810), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 188/501 (37%), Positives = 272/501 (54%), Gaps = 83/501 (16%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
++ W++ + +I+A+++ GF PT IQ +P+ KD++GAAETGSGKTLAFG+
Sbjct: 236 ELYAWLELRLHPLLIKAMHRLGFNEPTPIQKACIPAGAHQGKDVIGAAETGSGKTLAFGL 295
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
PIL ++ + E T D E+EAE T L ALIL PT
Sbjct: 296 PILQRLLEEREKTTRLHVED---EKEAEG----------------SSTGGPLRALILTPT 336
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
RELA QV +H+ +A K+ + V +VGG+S EKQ R+L K P I+V TPGRLWE + G+
Sbjct: 337 RELAKQVCDHLKEAAKFLGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRLWELMSSGN 396
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
HL EL+ +++ V+DE DRMIE GHF E+++I++ + ++ +S QT+ + + N+
Sbjct: 397 QHLVELHSLSFFVLDEADRMIERGHFKEVQSIIEMLPLSNSSD-EQTVKATSSCETVANL 455
Query: 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 448
+ RQTFVFSATL S LK+G S SK + D S
Sbjct: 456 --------QIKKRQTFVFSATLALSANFRKKLKRGLSTSKASTAEDLS------------ 495
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508
I +L+++ G+ + +IV
Sbjct: 496 -SIEELSKQAGMKP-----------------------------------------NAEIV 513
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTML 567
DLT + + L ES I C D+KD+ LYY + H GRT+VFC SIS+++ ++ LL L
Sbjct: 514 DLTNASILPEKLEESFIECSDDDKDANLYYILSVHGQGRTIVFCTSISALRHISSLLRTL 573
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+ L HA M QR R+K +DRFR+ NS+L+ATD ARG+D + VIHY +P +S++
Sbjct: 574 GINVLTNHAQMQQRARMKAVDRFREGENSVLVATDGFARGMDFDNVRTVIHYQLPHSSDV 633
Query: 628 YIHRSGRTARANNEGLTVVLI 648
YIHRSGRTAR + G ++ LI
Sbjct: 634 YIHRSGRTARKSLTGCSIALI 654
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA QV +H+ +A K+ + V +VGG+S EKQ R+L K P I+V TPG L
Sbjct: 330 ALILTPTRELAKQVCDHLKEAAKFLGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRL 388
Score = 61.6 bits (148), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTAR + G ++ LI + + + S K+ +L FP+D++ + I R
Sbjct: 632 DVYIHRSGRTARKSLTGCSIALISPADKAKFYSLCKSFSKE-NLQQFPVDQAYMPAIMNR 690
Query: 1298 IDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIID 1332
+ LA+ I+ + SK K+N +WL++ A+ M +I++
Sbjct: 691 LSLARQIDKISSKNSKENANKSWLQRNAESMGLILE 726
>gi|402591039|gb|EJW84969.1| DEAD/DEAH box helicase [Wuchereria bancrofti]
Length = 485
Score = 363 bits (931), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 209/519 (40%), Positives = 316/519 (60%), Gaps = 65/519 (12%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M+ W+ I + +++A+ GF PT+IQ +V+PSA+ R DI+GAAETGSGKTLAFG+P
Sbjct: 1 MSGWINLYISDAVLKAVADMGFTEPTEIQKLVIPSAVRDRFDIIGAAETGSGKTLAFGVP 60
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
++ ++ N S LE + + + ALILAPTR
Sbjct: 61 VVEHLL----------ANQSFLESSGQ--------------------KKGIRALILAPTR 90
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
EL +Q++NHI KYTP KVA VVGG+S +KQ RIL P I++ATPGRL ++
Sbjct: 91 ELVMQIKNHIDALLKYTPFKVASVVGGLSLQKQERILKYVPEIVIATPGRLLALMRSAEA 150
Query: 947 H--LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004
L++ + LV+DETDRMIE GHF +L++ILD + TS+ QTFVFSATLT++
Sbjct: 151 DSCLSDWSHLQCLVVDETDRMIEKGHFEDLQHILDTLR-KNTSKKLQTFVFSATLTYT-- 207
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK--IVDLTEKIGITKTLTESKILCKH 1062
+ + K+G + K+ D I RL ++ I+ K I+D+T + G +T+ E++I C +
Sbjct: 208 HPVPKKRGGVNADKMDT-DEKISRLIEITGIRKEKHRIIDITGEKGTARTVVEARINCNN 266
Query: 1063 D-EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL--HASMNQRQRLKN 1119
EKD+ L Y + ++ GRTLVF NS+ + +RL +L L+ P+PL HA M Q++RLKN
Sbjct: 267 LLEKDTNLIYLLSRYGGRTLVFTNSVDASRRLHGILEKLEHKPVPLMLHAKMMQKKRLKN 326
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
L++F + +S+LLATDVAARGLDI ++HVIHY +P+T+E+YIHR GRTARA EGL ++
Sbjct: 327 LEKFAMEEDSVLLATDVAARGLDIRDVQHVIHYQIPKTAELYIHRCGRTARATKEGLAIL 386
Query: 1180 LIESDEIPLYIKMFNSLEKKV----------------------DLPDFPIDESVL-SLIK 1216
LI+S ++ Y ++ +L + V + P FP+D L +++K
Sbjct: 387 LIDSQDVFYYQRICRNLNRDVPIPKTLLGYESVLTKKRLNLEKEFPIFPLDSPELYAILK 446
Query: 1217 KRIDLAKSIEYLESKIKK-NRPDNWLHRSGRTARANNEG 1254
KR+++A ++E L+ ++KK + W ++ +A + +G
Sbjct: 447 KRVEVATAVEALDHRLKKMHSKQTWFEKAAASADLDLDG 485
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 186/509 (36%), Positives = 268/509 (52%), Gaps = 121/509 (23%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M+ W+ I + +++A+ GF PT+IQ +V+PSA+ R DI+GAAETGSGKTLAFG+P
Sbjct: 1 MSGWINLYISDAVLKAVADMGFTEPTEIQKLVIPSAVRDRFDIIGAAETGSGKTLAFGVP 60
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
++ ++ N S LE + + + ALILAPTR
Sbjct: 61 VVEHLL----------ANQSFLESSGQ--------------------KKGIRALILAPTR 90
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
EL +Q++NHI KYTP KVA VVGG+S +KQ RIL P I++ATPGRL ++
Sbjct: 91 ELVMQIKNHIDALLKYTPFKVASVVGGLSLQKQERILKYVPEIVIATPGRLLALMRSAEA 150
Query: 330 H--LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
L++ + LV+DETDRMIE GHF +L++ILD + KN
Sbjct: 151 DSCLSDWSHLQCLVVDETDRMIEKGHFEDLQHILDTLR--------------------KN 190
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
TS+ QTFVFSATLT++ + + K+G + K+ D I RL ++ I+
Sbjct: 191 ---------TSKKLQTFVFSATLTYT--HPVPKKRGGVNADKMDT-DEKISRLIEITGIR 238
Query: 448 SPK--IVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
K I+D+T + G +T+ E++I C + EKD+ L Y + ++ GRTL
Sbjct: 239 KEKHRIIDITGEKGTARTVVEARINCNNLLEKDTNLIYLLSRYGGRTLV----------- 287
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
T ++ S+ L EK L+H L+ + KRL
Sbjct: 288 -----------FTNSVDASRRLHGILEK--------LEHKPVPLMLHAKMMQKKRL---- 324
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
KNL++F + +S+LLATDVAARGLDI ++HVIHY +P+T
Sbjct: 325 --------------------KNLEKFAMEEDSVLLATDVAARGLDIRDVQHVIHYQIPKT 364
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
+E+YIHR GRTARA EGL ++LI+S ++
Sbjct: 365 AELYIHRCGRTARATKEGLAILLIDSQDV 393
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%)
Query: 1344 IFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
ES + ALILAPTREL +Q++NHI KYTP KVA VVGG+S +KQ RIL
Sbjct: 71 FLESSGQKKGIRALILAPTRELVMQIKNHIDALLKYTPFKVASVVGGLSLQKQERILKYV 130
Query: 1404 PHILVATPGAL 1414
P I++ATPG L
Sbjct: 131 PEIVIATPGRL 141
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 24/117 (20%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV-------------------- 1279
++HR GRTARA EGL ++LI+S ++ Y ++ +L + V
Sbjct: 368 YIHRCGRTARATKEGLAILLIDSQDVFYYQRICRNLNRDVPIPKTLLGYESVLTKKRLNL 427
Query: 1280 --DLPDFPIDESVL-SLIKKRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIID 1332
+ P FP+D L +++KKR+++A ++E L+ ++KK + W EKAA D+ +D
Sbjct: 428 EKEFPIFPLDSPELYAILKKRVEVATAVEALDHRLKKMHSKQTWFEKAAASADLDLD 484
>gi|426195290|gb|EKV45220.1| hypothetical protein AGABI2DRAFT_120189 [Agaricus bisporus var.
bisporus H97]
Length = 761
Score = 362 bits (928), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 224/602 (37%), Positives = 332/602 (55%), Gaps = 121/602 (20%)
Query: 718 QVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPE 777
+V K + +SD+P +K + + ++ E+L D++ + EW +++
Sbjct: 72 RVAKFQVHESDQPVREKNSEIDVEDDIQEVSSSEILPFDST-------LLPEWASYSLHP 124
Query: 778 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE- 836
++ ALY+KGF++PT IQ+ +P A+ KD+VG A+TGSGKTLA+GIPIL ++++
Sbjct: 125 QLLHALYRKGFESPTSIQAAAIPVAVKG-KDVVGVAQTGSGKTLAYGIPILHYLLSQPRP 183
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
+P + R + ALILAPTRELA+QV +H+
Sbjct: 184 HPNK---------------------------------RRPVKALILAPTRELALQVSSHL 210
Query: 897 LDA---------------------GKYTP-----------------------VKVACVVG 912
+ GK P V VA +VG
Sbjct: 211 NECLNPTDRDTPATRNENSPDEAQGKDEPAGNQKGKRKKAVHNLPVKKRPPHVSVAAIVG 270
Query: 913 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
GMS +KQ RI+++ +LV TPGRLW+ I EL + +LV+DE DRMIESGHF
Sbjct: 271 GMSAQKQRRIIDRGVDVLVGTPGRLWDIIGEDDSLAKELKNLRFLVLDEADRMIESGHFA 330
Query: 973 ELKNILDRVTMTE------------------------TSQPRQTFVFSATLTHSLKNSLN 1008
EL+NIL R+T+ E T QTFV SATL+ L+ +L
Sbjct: 331 ELENIL-RLTLREDRDDEIPVEYNAMDTNTNEEQKPNTVYDLQTFVLSATLSKDLQRNLK 389
Query: 1009 LKKGQSKSKKVSKG---DPSIKRLQDLLNIKS----PKIVDLTEKIGITKTLTESKILCK 1061
K+ + K K KG P+ LL + P+I+DL+ + + TL E+KI C
Sbjct: 390 -KRWRPKDYKKRKGKNDKPATTLDDLLLRLDFRDPEPEIIDLSPEGKVVSTLQEAKIECL 448
Query: 1062 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
+EKD+YLYYF+L+HPGR+LVF +SI V+RL LL +L PLH+ + QRQRLKNLD
Sbjct: 449 VNEKDTYLYYFLLRHPGRSLVFLSSIDGVRRLMPLLGLLSIKVFPLHSQLEQRQRLKNLD 508
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
RF+ NS+LLATD+AARGLDIP ++HV+H+ +PRT++ YIHRSGRTARA N+G ++++I
Sbjct: 509 RFKSTPNSVLLATDIAARGLDIPAVDHVVHFQIPRTADSYIHRSGRTARAMNKGFSMLVI 568
Query: 1182 ESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-N 1239
DE + + SL + + D+P+ +D ++L +K+R+ LA+ IE + +++KN + N
Sbjct: 569 GPDERRVVKALMGSLSRDERDIPELSVDLNMLDKLKERVQLARQIEQRQHQVQKNNYEKN 628
Query: 1240 WL 1241
W+
Sbjct: 629 WV 630
Score = 205 bits (522), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 152/449 (33%), Positives = 222/449 (49%), Gaps = 107/449 (23%)
Query: 101 QVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPE 160
+V K + +SD+P +K + + ++ E+L D++ + EW +++
Sbjct: 72 RVAKFQVHESDQPVREKNSEIDVEDDIQEVSSSEILPFDST-------LLPEWASYSLHP 124
Query: 161 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE- 219
++ ALY+KGF++PT IQ+ +P A+ KD+VG A+TGSGKTLA+GIPIL ++++
Sbjct: 125 QLLHALYRKGFESPTSIQAAAIPVAVKG-KDVVGVAQTGSGKTLAYGIPILHYLLSQPRP 183
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
+P + R + ALILAPTRELA+QV +H+
Sbjct: 184 HPNK---------------------------------RRPVKALILAPTRELALQVSSHL 210
Query: 280 LDA---------------------GKYTP-----------------------VKVACVVG 295
+ GK P V VA +VG
Sbjct: 211 NECLNPTDRDTPATRNENSPDEAQGKDEPAGNQKGKRKKAVHNLPVKKRPPHVSVAAIVG 270
Query: 296 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 355
GMS +KQ RI+++ +LV TPGRLW+ I EL + +LV+DE DRMIESGHF
Sbjct: 271 GMSAQKQRRIIDRGVDVLVGTPGRLWDIIGEDDSLAKELKNLRFLVLDEADRMIESGHFA 330
Query: 356 ELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE----TSQPRQTFVFSATLT 411
EL+NIL R+T+ E P N +D T E T QTFV SATL+
Sbjct: 331 ELENIL-RLTLRED--------RDDEIPVEYNAMDTNTNEEQKPNTVYDLQTFVLSATLS 381
Query: 412 HSLKNSLNLKKGQSKSKKVSKG---DPSIKRLQDLLNIKS----PKIVDLTEKIGITKTL 464
L+ +L K+ + K K KG P+ LL + P+I+DL+ + + TL
Sbjct: 382 KDLQRNLK-KRWRPKDYKKRKGKNDKPATTLDDLLLRLDFRDPEPEIIDLSPEGKVVSTL 440
Query: 465 TESKILCKHDEKDSYLYYFILQHPGRTLC 493
E+KI C +EKD+YLYYF+L+HPGR+L
Sbjct: 441 QEAKIECLVNEKDTYLYYFLLRHPGRSLV 469
Score = 196 bits (498), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 85/148 (57%), Positives = 116/148 (78%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
P+I+DL+ + + TL E+KI C +EKD+YLYYF+L+HPGR+LVF +SI V+RL LL
Sbjct: 425 PEIIDLSPEGKVVSTLQEAKIECLVNEKDTYLYYFLLRHPGRSLVFLSSIDGVRRLMPLL 484
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PLH+ + QRQRLKNLDRF+ NS+LLATD+AARGLDIP ++HV+H+ +PRT
Sbjct: 485 GLLSIKVFPLHSQLEQRQRLKNLDRFKSTPNSVLLATDIAARGLDIPAVDHVVHFQIPRT 544
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDE 652
++ YIHRSGRTARA N+G ++++I DE
Sbjct: 545 ADSYIHRSGRTARAMNKGFSMLVIGPDE 572
Score = 68.2 bits (165), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKK 1296
D+++HRSGRTARA N+G ++++I DE + + SL + + D+P+ +D ++L +K+
Sbjct: 546 DSYIHRSGRTARAMNKGFSMLVIGPDERRVVKALMGSLSRDERDIPELSVDLNMLDKLKE 605
Query: 1297 RIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDE 1334
R+ LA+ IE + +++KN + NW+++ A+ + + +D +
Sbjct: 606 RVQLARQIEQRQHQVQKNNYEKNWVKETAEALGVDLDSD 644
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 44/110 (40%)
Query: 1349 NLRYSWDALILAPTRELAIQVQNHILDA---------------------GKYTP------ 1381
N R ALILAPTRELA+QV +H+ + GK P
Sbjct: 186 NKRRPVKALILAPTRELALQVSSHLNECLNPTDRDTPATRNENSPDEAQGKDEPAGNQKG 245
Query: 1382 -----------------VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
V VA +VGGMS +KQ RI+++ +LV TPG L
Sbjct: 246 KRKKAVHNLPVKKRPPHVSVAAIVGGMSAQKQRRIIDRGVDVLVGTPGRL 295
>gi|409048568|gb|EKM58046.1| hypothetical protein PHACADRAFT_182435 [Phanerochaete carnosa
HHB-10118-sp]
Length = 763
Score = 360 bits (924), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 222/601 (36%), Positives = 324/601 (53%), Gaps = 118/601 (19%)
Query: 725 IQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNE--------DMFVQMAEWVKFNIP 776
I DEP K K+ + T A V+ + E D+ + W +F++
Sbjct: 78 ITEDEPTKKGAKKTAQPHNVETKAGPSRASVEPTVTEERPEERPFDVKALLPAWHQFSLH 137
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN--K 834
+ R LY + F PT IQ+ +P A KD+VG AETGSGKTLA+G+PIL I+ K
Sbjct: 138 PQLNRVLYAQRFLIPTPIQAKAIPIATKG-KDVVGIAETGSGKTLAYGLPILHYILTQAK 196
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+E P + + R + ALILAPTRELA+QV +
Sbjct: 197 VEPPAQ-------------------------------RQRRPMRALILAPTRELALQVSS 225
Query: 895 HI-----------------------------------------LDAGKYTP-VKVACVVG 912
H+ L + P V VA +VG
Sbjct: 226 HLNACLNNVDVFSVKMKREEEEPDLGSRLKSKGKSKAKLDSEGLSKARSPPLVSVAAIVG 285
Query: 913 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
GMS +KQ RIL++ +LVATPGRLW+ +Q ++ + +LV+DE DRMIE+GHF
Sbjct: 286 GMSAQKQRRILDRGVDVLVATPGRLWDIMQEDEDLAYDIKHLRFLVLDEADRMIENGHFA 345
Query: 973 ELKNIL--------------------DRVTMT--------ETSQPRQTFVFSATLTHSLK 1004
EL NI+ DR T+ E + QT VFSATL+ L+
Sbjct: 346 ELDNIIRLTLKQSEDEAIEPEFEHDEDRNTVAKDLADEQGEMKEELQTLVFSATLSKDLQ 405
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKH 1062
NLKK S+K SK ++ L L+ + +P+++DL+ + G+ TL ES+I C
Sbjct: 406 R--NLKKRSRPSRKSSKPASTLDDLLLRLDFRDPNPEVIDLSPEGGVVSTLRESRIDCLT 463
Query: 1063 DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 1122
++KD++LYYF+L++PGR+L+F +SI ++RL L+ +L+ PLH+ + QRQRLKNLDR
Sbjct: 464 NDKDAHLYYFLLRYPGRSLIFLSSIDGIRRLMPLMELLQLKAFPLHSQLEQRQRLKNLDR 523
Query: 1123 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIE 1182
F+ NSILLATD+AARGLDIP ++HV+HY +PRT+++Y+HR+GRTARA G +L++I
Sbjct: 524 FKSMPNSILLATDIAARGLDIPAVDHVVHYQIPRTADVYVHRNGRTARAMRGGFSLLMIA 583
Query: 1183 SDEIPLYIKMFNSLEKK-VDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NW 1240
DE + + SL ++ ++PD I+ +L +K RI LA+ I+ L+ KI+K + + NW
Sbjct: 584 PDERRIVRALLGSLGRQEEEIPDMSIELYLLDKLKARIQLAREIDSLQHKIRKEKHEKNW 643
Query: 1241 L 1241
L
Sbjct: 644 L 644
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 221/448 (49%), Gaps = 104/448 (23%)
Query: 108 IQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNE--------DMFVQMAEWVKFNIP 159
I DEP+ K K+ + T A V+ + E D+ + W +F++
Sbjct: 78 ITEDEPTKKGAKKTAQPHNVETKAGPSRASVEPTVTEERPEERPFDVKALLPAWHQFSLH 137
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN--K 217
+ R LY + F PT IQ+ +P A KD+VG AETGSGKTLA+G+PIL I+ K
Sbjct: 138 PQLNRVLYAQRFLIPTPIQAKAIPIATKG-KDVVGIAETGSGKTLAYGLPILHYILTQAK 196
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+E P + + R + ALILAPTRELA+QV +
Sbjct: 197 VEPPAQ-------------------------------RQRRPMRALILAPTRELALQVSS 225
Query: 278 HI-----------------------------------------LDAGKYTP-VKVACVVG 295
H+ L + P V VA +VG
Sbjct: 226 HLNACLNNVDVFSVKMKREEEEPDLGSRLKSKGKSKAKLDSEGLSKARSPPLVSVAAIVG 285
Query: 296 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 355
GMS +KQ RIL++ +LVATPGRLW+ +Q ++ + +LV+DE DRMIE+GHF
Sbjct: 286 GMSAQKQRRILDRGVDVLVATPGRLWDIMQEDEDLAYDIKHLRFLVLDEADRMIENGHFA 345
Query: 356 ELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT--------ETSQPRQTFVFS 407
EL NI+ R+T+ Q IE PE ++ DR T+ E + QT VFS
Sbjct: 346 ELDNII-RLTL---KQSEDEAIE----PEFEHDEDRNTVAKDLADEQGEMKEELQTLVFS 397
Query: 408 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIGITKTLT 465
ATL+ L+ NLKK S+K SK ++ L L+ + +P+++DL+ + G+ TL
Sbjct: 398 ATLSKDLQR--NLKKRSRPSRKSSKPASTLDDLLLRLDFRDPNPEVIDLSPEGGVVSTLR 455
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLC 493
ES+I C ++KD++LYYF+L++PGR+L
Sbjct: 456 ESRIDCLTNDKDAHLYYFLLRYPGRSLI 483
Score = 194 bits (492), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 118/149 (79%)
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
+P+++DL+ + G+ TL ES+I C ++KD++LYYF+L++PGR+L+F +SI ++RL L
Sbjct: 438 NPEVIDLSPEGGVVSTLRESRIDCLTNDKDAHLYYFLLRYPGRSLIFLSSIDGIRRLMPL 497
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
+ +L+ PLH+ + QRQRLKNLDRF+ NSILLATD+AARGLDIP ++HV+HY +PR
Sbjct: 498 MELLQLKAFPLHSQLEQRQRLKNLDRFKSMPNSILLATDIAARGLDIPAVDHVVHYQIPR 557
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDE 652
T+++Y+HR+GRTARA G ++++I DE
Sbjct: 558 TADVYVHRNGRTARAMRGGFSLLMIAPDE 586
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK-VDLPDFPIDESVLSLIKK 1296
D ++HR+GRTARA G +L++I DE + + SL ++ ++PD I+ +L +K
Sbjct: 560 DVYVHRNGRTARAMRGGFSLLMIAPDERRIVRALLGSLGRQEEEIPDMSIELYLLDKLKA 619
Query: 1297 RIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIID 1332
RI LA+ I+ L+ KI+K + + NWL++AA+ MDI +D
Sbjct: 620 RIQLAREIDSLQHKIRKEKHEKNWLKEAAEAMDIELD 656
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 46/106 (43%), Gaps = 42/106 (39%)
Query: 1351 RYSWDALILAPTRELAIQVQNHI------------------------------------- 1373
R ALILAPTRELA+QV +H+
Sbjct: 205 RRPMRALILAPTRELALQVSSHLNACLNNVDVFSVKMKREEEEPDLGSRLKSKGKSKAKL 264
Query: 1374 ----LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L + P V VA +VGGMS +KQ RIL++ +LVATPG L
Sbjct: 265 DSEGLSKARSPPLVSVAAIVGGMSAQKQRRILDRGVDVLVATPGRL 310
>gi|357167963|ref|XP_003581416.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Brachypodium
distachyon]
Length = 872
Score = 359 bits (922), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 210/528 (39%), Positives = 304/528 (57%), Gaps = 55/528 (10%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
ED F W++ + +++A+++ GFK PT IQ P+ KD++GAAETGSGK
Sbjct: 233 GEDEFYA---WLELRLHPLLVKAMHRLGFKEPTPIQKACFPAGAHQGKDVIGAAETGSGK 289
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879
TLAFG+PIL ++ EE E + L E ++ +EE T L A
Sbjct: 290 TLAFGLPILQRLL-------EEREKATRLNVEDKKAMEE------------SSTGGPLRA 330
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LIL PTRELA QV +H+ +A K+ + V +VGG+S EKQ R+L K P I+V TPGRLWE
Sbjct: 331 LILTPTRELAKQVCDHLKEASKFLGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRLWE 390
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS------------ 987
+ G+ HL EL+ +++ V+DE DRMIE GHF EL +I++ + ++ +S
Sbjct: 391 LMSTGNQHLVELHSLSFFVLDEADRMIERGHFKELHSIIEMLPLSNSSDEQAVRATPSCE 450
Query: 988 -------QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD--PSIKRLQDLLNIK-S 1037
+ RQTFVFSATL S LK+G S S K S D SI+ L +K +
Sbjct: 451 TVLNLQIKKRQTFVFSATLALSANFRSKLKRGLSTS-KASMADNLSSIEALSKQAGMKPN 509
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQL 1096
+IVDLT + + L ES I C D+KD+ LYY + H GRT++FC SI++++ ++ L
Sbjct: 510 AEIVDLTNASILPEKLEESFIECSDDDKDANLYYILSVHGQGRTIIFCTSIAALRHISSL 569
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L +L + L HA M QR R+K +DRFR+ NSIL+ATD ARG+D + VIHY +P
Sbjct: 570 LRILGINVLTNHAQMQQRARMKAVDRFRESENSILVATDGFARGMDFDNVRTVIHYQLPH 629
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1216
+S++YIHRSGRTAR + G ++ LI + + + S K+ +L FP+D + + +
Sbjct: 630 SSDVYIHRSGRTARKSLAGCSIALISPADKAKFYSLCKSFSKE-NLQQFPVDHAYMPAVM 688
Query: 1217 KRIDLAKSIEYLESK-IKKNRPDNWLHRSGRTARANNEGLTLVLIESD 1263
R+ LA+ I+ + K ++N +WL R N E + L+L SD
Sbjct: 689 NRLSLARQIDKISRKNSQENANKSWLQR-------NAESMGLILEGSD 729
Score = 317 bits (812), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 192/507 (37%), Positives = 275/507 (54%), Gaps = 86/507 (16%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
ED F W++ + +++A+++ GFK PT IQ P+ KD++GAAETGSGK
Sbjct: 233 GEDEFYA---WLELRLHPLLVKAMHRLGFKEPTPIQKACFPAGAHQGKDVIGAAETGSGK 289
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262
TLAFG+PIL ++ EE E + L E ++ +EE T L A
Sbjct: 290 TLAFGLPILQRLL-------EEREKATRLNVEDKKAMEE------------SSTGGPLRA 330
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LIL PTRELA QV +H+ +A K+ + V +VGG+S EKQ R+L K P I+V TPGRLWE
Sbjct: 331 LILTPTRELAKQVCDHLKEASKFLGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRLWE 390
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
+ G+ HL EL+ +++ V+DE DRMIE GHF EL +I++ + ++ +S +
Sbjct: 391 LMSTGNQHLVELHSLSFFVLDEADRMIERGHFKELHSIIEMLPLSNSSDEQAVRAT---- 446
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 442
P + +L+ + RQTFVFSATL S LK+G S S K S D
Sbjct: 447 PSCETVLNLQI-----KKRQTFVFSATLALSANFRSKLKRGLSTS-KASMAD-------- 492
Query: 443 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNI 502
N+ S I L+++ G+
Sbjct: 493 --NLSS--IEALSKQAGMKP---------------------------------------- 508
Query: 503 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLT 561
+ +IVDLT + + L ES I C D+KD+ LYY + H GRT++FC SI++++ ++
Sbjct: 509 -NAEIVDLTNASILPEKLEESFIECSDDDKDANLYYILSVHGQGRTIIFCTSIAALRHIS 567
Query: 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621
LL +L + L HA M QR R+K +DRFR+ NSIL+ATD ARG+D + VIHY +
Sbjct: 568 SLLRILGINVLTNHAQMQQRARMKAVDRFRESENSILVATDGFARGMDFDNVRTVIHYQL 627
Query: 622 PRTSEIYIHRSGRTARANNEGLTVVLI 648
P +S++YIHRSGRTAR + G ++ LI
Sbjct: 628 PHSSDVYIHRSGRTARKSLAGCSIALI 654
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA QV +H+ +A K+ + V +VGG+S EKQ R+L K P I+V TPG L
Sbjct: 330 ALILTPTRELAKQVCDHLKEASKFLGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRL 388
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTAR + G ++ LI + + + S K+ +L FP+D + + + R
Sbjct: 632 DVYIHRSGRTARKSLAGCSIALISPADKAKFYSLCKSFSKE-NLQQFPVDHAYMPAVMNR 690
Query: 1298 IDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIID 1332
+ LA+ I+ + K ++N +WL++ A+ M +I++
Sbjct: 691 LSLARQIDKISRKNSQENANKSWLQRNAESMGLILE 726
>gi|66812546|ref|XP_640452.1| hypothetical protein DDB_G0281841 [Dictyostelium discoideum AX4]
gi|74997024|sp|Q54TD7.1|DDX24_DICDI RecName: Full=ATP-dependent RNA helicase ddx24; AltName: Full=DEAD
box protein 24
gi|60468476|gb|EAL66480.1| hypothetical protein DDB_G0281841 [Dictyostelium discoideum AX4]
Length = 940
Score = 359 bits (922), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 217/562 (38%), Positives = 316/562 (56%), Gaps = 72/562 (12%)
Query: 750 KELLEVDT-SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
KE+ E T S E + M+EW +N+ I++ L GF PT+IQS V+P A+ + D
Sbjct: 275 KEISEQKTISKEEQDQLDMSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYD 334
Query: 809 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868
++GAA+TGSGKTLAFGIP++ I+ L + EN + ++ + E EE E
Sbjct: 335 VIGAAQTGSGKTLAFGIPMVQRILQHLRKHGQNVENKANKQQNDNDDENEDVEEEEEEEE 394
Query: 869 FVKKTR--NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926
+++ KL++L++ PTRELAIQV NHI +T +KV +VGGM++++Q R+L+K
Sbjct: 395 EEGRSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQQRVLSKR 454
Query: 927 PHILVATPGRLWEF-------------------------IQLGHF------------HLT 949
P I+VATPGRLWE ++ GHF H T
Sbjct: 455 PEIVVATPGRLWELITEGHQHLVELESLLCLGIDEADRMVEQGHFAELESILKTLPIHRT 514
Query: 950 ELYKINYLVIDET----------DRMIESGHF--PELKNILDRV-------------TMT 984
+ K L ET D++ + G + ++ D++
Sbjct: 515 AMSKKERLKKKETEEKRNKRRKVDKLNDKGEMIKGDQDDMDDQIPDEEMEELEQEEQNHL 574
Query: 985 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 1044
T+ RQTFVFSATL N S+ KK K P ++ + + K++D+T
Sbjct: 575 TTTHKRQTFVFSATLV----NIPGDGAPTSQKKKYRKLTPIENLIEKVRFQRDYKLIDVT 630
Query: 1045 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 1104
+K K L E+KI C +EKD YLYYF+ ++PGRTLVF NSI +RL + +L+
Sbjct: 631 QKRLTAKNLLETKIFCNLEEKDMYLYYFVERYPGRTLVFVNSIDCARRLIPIFNILEVPV 690
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
LHA M Q+QRLKNLDRFR +N +L+ATDVAARGLDIP ++HVIHY VPRT+++YIHR
Sbjct: 691 FALHAQMQQKQRLKNLDRFRTLDNVVLIATDVAARGLDIPLVQHVIHYQVPRTTQLYIHR 750
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
SGRTAR++ +G+++VL+ E PLYIK+ +S+E D+ +FP D + ++ RI+LAK
Sbjct: 751 SGRTARSDQDGISVVLVTPKERPLYIKLDSSIEH--DIGNFPTDIRYMEGVRDRIELAKE 808
Query: 1225 IEYLESK-IKKNRPDNWLHRSG 1245
I+ L + +K NR +W +
Sbjct: 809 IDKLSHQSLKDNREKSWFKKQA 830
Score = 346 bits (887), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 215/552 (38%), Positives = 304/552 (55%), Gaps = 71/552 (12%)
Query: 133 KELLEVDT-SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
KE+ E T S E + M+EW +N+ I++ L GF PT+IQS V+P A+ + D
Sbjct: 275 KEISEQKTISKEEQDQLDMSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYD 334
Query: 192 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251
++GAA+TGSGKTLAFGIP++ I+ L + EN + ++ + E EE E
Sbjct: 335 VIGAAQTGSGKTLAFGIPMVQRILQHLRKHGQNVENKANKQQNDNDDENEDVEEEEEEEE 394
Query: 252 FVKKTR--NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309
+++ KL++L++ PTRELAIQV NHI +T +KV +VGGM++++Q R+L+K
Sbjct: 395 EEGRSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQQRVLSKR 454
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
P I+VATPGRLWE I GH HL EL + L IDE DRM+E G
Sbjct: 455 PEIVVATPGRLWELITEGHQHLVELESLLCLGIDEADRMVEQG----------------- 497
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 429
HF EL++IL + + T+ S K L K+ + K K
Sbjct: 498 -----------HFAELESILKTLPIHRTAM-------------SKKERLKKKETEEKRNK 533
Query: 430 VSKGDP------SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 483
K D IK QD ++ + P + LT + H +
Sbjct: 534 RRKVDKLNDKGEMIKGDQDDMDDQIPDEEMEELEQEEQNHLTTT-----HKRQTFVFSAT 588
Query: 484 ILQHPG-----------RTLCEEIQDLLN----IKSPKIVDLTEKIGITKTLTESKILCK 528
++ PG R L I++L+ + K++D+T+K K L E+KI C
Sbjct: 589 LVNIPGDGAPTSQKKKYRKLTP-IENLIEKVRFQRDYKLIDVTQKRLTAKNLLETKIFCN 647
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
+EKD YLYYF+ ++PGRTLVF NSI +RL + +L+ LHA M Q+QRLKNLD
Sbjct: 648 LEEKDMYLYYFVERYPGRTLVFVNSIDCARRLIPIFNILEVPVFALHAQMQQKQRLKNLD 707
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
RFR +N +L+ATDVAARGLDIP ++HVIHY VPRT+++YIHRSGRTAR++ +G++VVL+
Sbjct: 708 RFRTLDNVVLIATDVAARGLDIPLVQHVIHYQVPRTTQLYIHRSGRTARSDQDGISVVLV 767
Query: 649 ESDEIPLKTKFN 660
E PL K +
Sbjct: 768 TPKERPLYIKLD 779
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 67/96 (69%), Gaps = 3/96 (3%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTAR++ +G+++VL+ E PLYIK+ +S+E D+ +FP D + ++ RI+
Sbjct: 747 YIHRSGRTARSDQDGISVVLVTPKERPLYIKLDSSIEH--DIGNFPTDIRYMEGVRDRIE 804
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LAK I+ L + +K NR +W +K A++MDI +D +
Sbjct: 805 LAKEIDKLSHQSLKDNREKSWFKKQAEEMDIELDGD 840
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+L++ PTRELAIQV NHI +T +KV +VGGM++++Q R+L+K P I+VATPG L
Sbjct: 407 SLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQQRVLSKRPEIVVATPGRL 465
>gi|449458872|ref|XP_004147170.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Cucumis
sativus]
Length = 848
Score = 359 bits (922), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 197/500 (39%), Positives = 297/500 (59%), Gaps = 46/500 (9%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + +++++Y+ GFK PT IQ +P+A KD+VGAAETGSGKTLAFG+PIL
Sbjct: 218 WNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQ 277
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ E E+ + EE+ + ++ K+ L ALI+ PTRELA
Sbjct: 278 RFLD-----------------EREKSGKMSEEKGVDAKKYAPKSL--LRALIITPTRELA 318
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+QV +H+ ++V +VGGMSTEKQ R+L P ++V TPGRLWE + G HL
Sbjct: 319 LQVTDHLKAVAVGIDIRVVPIVGGMSTEKQERLLRTRPEVVVGTPGRLWELMSGGEKHLV 378
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS------------------QPRQ 991
EL +++ V+DE DRMIE+GHF EL++I+D + +T S + RQ
Sbjct: 379 ELEALSFFVLDEADRMIENGHFRELQSIIDMLPVTNGSAENLQNAENSLTTPISQRKKRQ 438
Query: 992 TFVFSATLTHSLKNSLNLKKGQSKSKKVS-KGDPSIKRLQDLLNIK-SPKIVDLTEKIGI 1049
T VFSATL+ S LK+ SK + G SI+ L + I+ + +++LT +
Sbjct: 439 TLVFSATLSLSSDFRKKLKRVSSKPNQSGMDGLNSIEALSERAGIRPNVAVINLTNTSVL 498
Query: 1050 TKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
L ES I C+ ++KD+YLYY + + GRT+VFC SI++++ + LL+++ + L LH
Sbjct: 499 ANNLEESFIECREEDKDAYLYYILSVYGQGRTIVFCTSIAALRHIAALLSIVGVNVLTLH 558
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
A QR RLK +DRFR N IL+ATDVAARGLDIPG+ V+HY +P ++E+Y+HRSGRT
Sbjct: 559 AQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRT 618
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL 1228
ARA+ +G ++ L+ ++E + + S K+ FP+D S + + KR+ LA+ I+ +
Sbjct: 619 ARASADGCSIALVSANETSKFASLCKSFSKE-SFQRFPVDNSYMPEVLKRLSLARQIDKI 677
Query: 1229 ---ESKIKKNRPDNWLHRSG 1245
ES+ K ++ W R+
Sbjct: 678 VRKESQEKASK--TWFERNA 695
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 189/503 (37%), Positives = 281/503 (55%), Gaps = 88/503 (17%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + + +++++Y+ GFK PT IQ +P+A KD+VGAAETGSGKTLAFG+PIL
Sbjct: 218 WNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQ 277
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ E E+ + EE+ + ++ K+ L ALI+ PTRELA
Sbjct: 278 RFLD-----------------EREKSGKMSEEKGVDAKKYAPKSL--LRALIITPTRELA 318
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+QV +H+ ++V +VGGMSTEKQ R+L P ++V TPGRLWE + G HL
Sbjct: 319 LQVTDHLKAVAVGIDIRVVPIVGGMSTEKQERLLRTRPEVVVGTPGRLWELMSGGEKHLV 378
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
EL +++ V+DE DRMIE+GHF EL++I+D + +T +G L+N + +
Sbjct: 379 ELEALSFFVLDEADRMIENGHFRELQSIIDMLPVT-----------NGSAENLQNAENSL 427
Query: 393 TMTETSQ--PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450
T T SQ RQT VFSATL+ S LK+ SK P+ + L +I++
Sbjct: 428 T-TPISQRKKRQTLVFSATLSLSSDFRKKLKRVSSK--------PNQSGMDGLNSIEA-- 476
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
L+E+ GI + +++L
Sbjct: 477 ---LSERAGIRPNVA-----------------------------------------VINL 492
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
T + L ES I C+ ++KD+YLYY + + GRT+VFC SI++++ + LL+++
Sbjct: 493 TNTSVLANNLEESFIECREEDKDAYLYYILSVYGQGRTIVFCTSIAALRHIAALLSIVGV 552
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+ L LHA QR RLK +DRFR N IL+ATDVAARGLDIPG+ V+HY +P ++E+Y+
Sbjct: 553 NVLTLHAQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYV 612
Query: 630 HRSGRTARANNEGLTVVLIESDE 652
HRSGRTARA+ +G ++ L+ ++E
Sbjct: 613 HRSGRTARASADGCSIALVSANE 635
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV +H+ ++V +VGGMSTEKQ R+L P ++V TPG L
Sbjct: 308 ALIITPTRELALQVTDHLKAVAVGIDIRVVPIVGGMSTEKQERLLRTRPEVVVGTPGRL 366
Score = 60.5 bits (145), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 62/99 (62%), Gaps = 6/99 (6%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA+ +G ++ L+ ++E + + S K+ FP+D S + + KR+
Sbjct: 611 YVHRSGRTARASADGCSIALVSANETSKFASLCKSFSKE-SFQRFPVDNSYMPEVLKRLS 669
Query: 1300 LAKSIEYL---ESKIKKNRPDNWLEKAAKDMDIIIDDEN 1335
LA+ I+ + ES+ K ++ W E+ A+ +++++D+++
Sbjct: 670 LARQIDKIVRKESQEKASK--TWFERNAELVELVVDNDD 706
>gi|341883047|gb|EGT38982.1| hypothetical protein CAEBREN_08481 [Caenorhabditis brenneri]
Length = 736
Score = 359 bits (921), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 227/598 (37%), Positives = 341/598 (57%), Gaps = 70/598 (11%)
Query: 660 NLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRK-QNPSQVEVSELSANTNDPDDQ 718
N+++E + E A+ K K + + KK++L RK Q ++ V+E+ A T +++
Sbjct: 70 NVEDETSAENRRNAKKLKRKLQ-MAANRKQKKERLARKKQKLAEEGVNEVEAATEGNENK 128
Query: 719 VNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPET 778
K Q + K K KK +T SA ++L F +P
Sbjct: 129 QKKKRSAQVEN------KTKSKKAKTDISAWEKL--------------------FFLPTE 162
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
I++A+ + GF PT+IQS V+P A+ R D++GAAETGSGKTLAFGIP+++ + L++
Sbjct: 163 ILQAVERMGFSQPTEIQSAVLPIAVRDRMDVLGAAETGSGKTLAFGIPLVSRL---LDDI 219
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
+ D+ SG ALI+APTREL IQ+ HI
Sbjct: 220 SSGDQKSSGPR-----------------------------ALIIAPTRELVIQIMRHINA 250
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHF--HLTELYKIN 955
+ TP+K +VGG++ KQ R++++ P ILVATPGRLW IQ + +L E +
Sbjct: 251 LIETTPLKATSIVGGLAQVKQDRVISQQRPDILVATPGRLWAMIQEANEGDYLAEWRNLK 310
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DETDRM+E G+F EL +IL++V + QT VFSATLT + S + + + K
Sbjct: 311 CLVVDETDRMVEEGYFAELTHILNKVHEECDREKLQTLVFSATLTFA--KSQGVAEEEKK 368
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPK--IVDLTEKIGITKTLTESKILCKHD-EKDSYLYYF 1072
K I+RL L ++ K +VDLT + G L E+++ C + EKD+ L Y
Sbjct: 369 KAKELSTQQKIQRLIKLTGLRETKHKVVDLTRQTGTAGCLVEARLNCGNLLEKDTSLVYL 428
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
+ ++ GRT+VF NS+ + +RL +L + P+ LHA M Q+ RL+NL++F + N++L+
Sbjct: 429 LSRYAGRTIVFVNSVDAARRLHCILKAVNIDPMILHAKMVQKHRLRNLEKFSESKNAVLI 488
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDI GI+HVIHY VP+T EIYIHRSGRTARA++ GLT++L++ Y+K+
Sbjct: 489 ATDVASRGLDIRGIDHVIHYQVPKTVEIYIHRSGRTARASHRGLTVILVDPQSRQFYLKL 548
Query: 1193 FNSLEKKVDLPDFPID-ESVLSLIKKRIDLAKSIEYLESKIKKNR-PDNWLHRSGRTA 1248
L + DL FPID E +++ IK R+ LA I+ L + KK + ++W ++ R A
Sbjct: 549 CKGLNRMQDLDVFPIDFEPLMNAIKTRVRLASEIDSLSFRCKKIKMSESWFEKAAREA 606
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 148/461 (32%), Positives = 230/461 (49%), Gaps = 99/461 (21%)
Query: 45 EAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNK 104
EA+ NE VE+ + + + KKLKRK +++AN +++ +
Sbjct: 63 EAKTNEVNVEDETSAENRRNA---------KKLKRKL--------QMAANRKQKKERLAR 105
Query: 105 T------EEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVK-FN 157
E + E +++ + K+KKK++ NK + ++ ++ W K F
Sbjct: 106 KKQKLAEEGVNEVEAATEGNENKQKKKRSAQVENK-------TKSKKAKTDISAWEKLFF 158
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+P I++A+ + GF PT+IQS V+P A+ R D++GAAETGSGKTLAFGIP+++ +
Sbjct: 159 LPTEILQAVERMGFSQPTEIQSAVLPIAVRDRMDVLGAAETGSGKTLAFGIPLVSRL--- 215
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
L++ + D+ SG ALI+APTREL IQ+
Sbjct: 216 LDDISSGDQKSSGPR-----------------------------ALIIAPTRELVIQIMR 246
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGH--FHLTEL 334
HI + TP+K +VGG++ KQ R++++ P ILVATPGRLW IQ + +L E
Sbjct: 247 HINALIETTPLKATSIVGGLAQVKQDRVISQQRPDILVATPGRLWAMIQEANEGDYLAEW 306
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+ LV+DETDRM+E G+F EL +IL++V DR +
Sbjct: 307 RNLKCLVVDETDRMVEEGYFAELTHILNKV---------------------HEECDREKL 345
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP--KIV 452
QT VFSATLT + S + + + K K I+RL L ++ K+V
Sbjct: 346 -------QTLVFSATLTFA--KSQGVAEEEKKKAKELSTQQKIQRLIKLTGLRETKHKVV 396
Query: 453 DLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTL 492
DLT + G L E+++ C + EKD+ L Y + ++ GRT+
Sbjct: 397 DLTRQTGTAGCLVEARLNCGNLLEKDTSLVYLLSRYAGRTI 437
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 108/145 (74%), Gaps = 1/145 (0%)
Query: 506 KIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
K+VDLT + G L E+++ C + EKD+ L Y + ++ GRT+VF NS+ + +RL +L
Sbjct: 394 KVVDLTRQTGTAGCLVEARLNCGNLLEKDTSLVYLLSRYAGRTIVFVNSVDAARRLHCIL 453
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+ P+ LHA M Q+ RL+NL++F + N++L+ATDVA+RGLDI GI+HVIHY VP+T
Sbjct: 454 KAVNIDPMILHAKMVQKHRLRNLEKFSESKNAVLIATDVASRGLDIRGIDHVIHYQVPKT 513
Query: 625 SEIYIHRSGRTARANNEGLTVVLIE 649
EIYIHRSGRTARA++ GLTV+L++
Sbjct: 514 VEIYIHRSGRTARASHRGLTVILVD 538
Score = 76.6 bits (187), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID-ESVLSLIKKRI 1298
++HRSGRTARA++ GLT++L++ Y+K+ L + DL FPID E +++ IK R+
Sbjct: 517 YIHRSGRTARASHRGLTVILVDPQSRQFYLKLCKGLNRMQDLDVFPIDFEPLMNAIKTRV 576
Query: 1299 DLAKSIEYLESKIKKNR-PDNWLEKAAKDMDIIIDD 1333
LA I+ L + KK + ++W EKAA++ D+ D+
Sbjct: 577 RLASEIDSLSFRCKKIKMSESWFEKAAREADLEYDE 612
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGAL 1414
ALI+APTREL IQ+ HI + TP+K +VGG++ KQ R++++ P ILVATPG L
Sbjct: 231 ALIIAPTRELVIQIMRHINALIETTPLKATSIVGGLAQVKQDRVISQQRPDILVATPGRL 290
>gi|449509127|ref|XP_004163501.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like, partial
[Cucumis sativus]
Length = 784
Score = 358 bits (919), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 197/500 (39%), Positives = 297/500 (59%), Gaps = 46/500 (9%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + +++++Y+ GFK PT IQ +P+A KD+VGAAETGSGKTLAFG+PIL
Sbjct: 198 WNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQ 257
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ E E+ + EE+ + ++ K+ L ALI+ PTRELA
Sbjct: 258 RFLD-----------------EREKSGKMSEEKGVDAKKYAPKSL--LRALIITPTRELA 298
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+QV +H+ ++V +VGGMSTEKQ R+L P ++V TPGRLWE + G HL
Sbjct: 299 LQVTDHLKAVAVGIDIRVVPIVGGMSTEKQERLLRTRPEVVVGTPGRLWELMSGGEKHLV 358
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS------------------QPRQ 991
EL +++ V+DE DRMIE+GHF EL++I+D + +T S + RQ
Sbjct: 359 ELEALSFFVLDEADRMIENGHFRELQSIIDMLPVTNGSAENLQNAENSLTTPISQRKKRQ 418
Query: 992 TFVFSATLTHSLKNSLNLKKGQSKSKKVS-KGDPSIKRLQDLLNIK-SPKIVDLTEKIGI 1049
T VFSATL+ S LK+ SK + G SI+ L + I+ + +++LT +
Sbjct: 419 TLVFSATLSLSSDFRKKLKRVSSKPNQSGMDGLNSIEALSERAGIRPNVAVINLTNTSVL 478
Query: 1050 TKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
L ES I C+ ++KD+YLYY + + GRT+VFC SI++++ + LL+++ + L LH
Sbjct: 479 ANNLEESFIECREEDKDAYLYYILSVYGQGRTIVFCTSIAALRHIAALLSIVGVNVLTLH 538
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
A QR RLK +DRFR N IL+ATDVAARGLDIPG+ V+HY +P ++E+Y+HRSGRT
Sbjct: 539 AQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRT 598
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL 1228
ARA+ +G ++ L+ ++E + + S K+ FP+D S + + KR+ LA+ I+ +
Sbjct: 599 ARASADGCSIALVSANETSKFASLCKSFSKE-SFQRFPVDNSYMPEVLKRLSLARQIDKI 657
Query: 1229 ---ESKIKKNRPDNWLHRSG 1245
ES+ K ++ W R+
Sbjct: 658 VRKESQEKASK--TWFERNA 675
Score = 327 bits (837), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 189/503 (37%), Positives = 281/503 (55%), Gaps = 88/503 (17%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + + +++++Y+ GFK PT IQ +P+A KD+VGAAETGSGKTLAFG+PIL
Sbjct: 198 WNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQ 257
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ E E+ + EE+ + ++ K+ L ALI+ PTRELA
Sbjct: 258 RFLD-----------------EREKSGKMSEEKGVDAKKYAPKSL--LRALIITPTRELA 298
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+QV +H+ ++V +VGGMSTEKQ R+L P ++V TPGRLWE + G HL
Sbjct: 299 LQVTDHLKAVAVGIDIRVVPIVGGMSTEKQERLLRTRPEVVVGTPGRLWELMSGGEKHLV 358
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
EL +++ V+DE DRMIE+GHF EL++I+D + +T +G L+N + +
Sbjct: 359 ELEALSFFVLDEADRMIENGHFRELQSIIDMLPVT-----------NGSAENLQNAENSL 407
Query: 393 TMTETSQ--PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450
T T SQ RQT VFSATL+ S LK+ SK P+ + L +I++
Sbjct: 408 T-TPISQRKKRQTLVFSATLSLSSDFRKKLKRVSSK--------PNQSGMDGLNSIEA-- 456
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
L+E+ GI + +++L
Sbjct: 457 ---LSERAGIRPNVA-----------------------------------------VINL 472
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
T + L ES I C+ ++KD+YLYY + + GRT+VFC SI++++ + LL+++
Sbjct: 473 TNTSVLANNLEESFIECREEDKDAYLYYILSVYGQGRTIVFCTSIAALRHIAALLSIVGV 532
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+ L LHA QR RLK +DRFR N IL+ATDVAARGLDIPG+ V+HY +P ++E+Y+
Sbjct: 533 NVLTLHAQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYV 592
Query: 630 HRSGRTARANNEGLTVVLIESDE 652
HRSGRTARA+ +G ++ L+ ++E
Sbjct: 593 HRSGRTARASADGCSIALVSANE 615
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV +H+ ++V +VGGMSTEKQ R+L P ++V TPG L
Sbjct: 288 ALIITPTRELALQVTDHLKAVAVGIDIRVVPIVGGMSTEKQERLLRTRPEVVVGTPGRL 346
Score = 60.5 bits (145), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 62/99 (62%), Gaps = 6/99 (6%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA+ +G ++ L+ ++E + + S K+ FP+D S + + KR+
Sbjct: 591 YVHRSGRTARASADGCSIALVSANETSKFASLCKSFSKE-SFQRFPVDNSYMPEVLKRLS 649
Query: 1300 LAKSIEYL---ESKIKKNRPDNWLEKAAKDMDIIIDDEN 1335
LA+ I+ + ES+ K ++ W E+ A+ +++++D+++
Sbjct: 650 LARQIDKIVRKESQEKASK--TWFERNAELVELVVDNDD 686
>gi|336388501|gb|EGO29645.1| ATP-dependent RNA helicase [Serpula lacrymans var. lacrymans S7.9]
Length = 754
Score = 358 bits (918), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 204/546 (37%), Positives = 305/546 (55%), Gaps = 108/546 (19%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ W +++ +++ L+ +GF TPT IQS +P A+ R DIVG AETGSGKTLA+G+P
Sbjct: 128 LPNWHSYSLHPHLLQILHHQGFTTPTPIQSKSLPKAMEGR-DIVGVAETGSGKTLAYGLP 186
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL ++++ +P+ K + ++ AL+LAPTR
Sbjct: 187 ILHHLLSRSRHPS-------------------------------SKVKRQVQALVLAPTR 215
Query: 887 ELAIQVQNHI---------------LDA-------------------------GKYTPVK 906
ELA+QV +H+ LD K V
Sbjct: 216 ELALQVSDHLNMFARSIEAPIKEETLDVELSETQQLKDKSKGKNVVSGTAKTFSKPPLVS 275
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966
+A +VGGMS +KQ RI+++ IL+ATPGRLW+ ++ +L + YL++DE DRM+
Sbjct: 276 IAAIVGGMSAQKQRRIIDRGVDILIATPGRLWDILEEDDSLAKQLASLRYLILDEADRMV 335
Query: 967 ESGHFPELKNILDRVTM----------------------TETSQPRQTFVFSATLTHSLK 1004
E+GHF EL NIL R+T+ ET QTFVFSATL+ L+
Sbjct: 336 ENGHFAELDNIL-RLTLRLSREDVIEPEFETQDTEVQAHAETEDALQTFVFSATLSKDLQ 394
Query: 1005 NSLNLKKG-------QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 1057
+LKKG + +SK S + + RL +P+++D++ + G+ L ESK
Sbjct: 395 R--DLKKGYRPRIGKKGRSKPASTLEDLVLRLD--FRDANPEVIDISPEGGVVSGLQESK 450
Query: 1058 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 1117
I C +KD YLYYF+L++PGR+LVF +SI ++RLT L+ +L PLH+ + QRQRL
Sbjct: 451 IECLSADKDIYLYYFLLRYPGRSLVFLSSIDGIRRLTPLMDLLNVKVFPLHSQLEQRQRL 510
Query: 1118 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 1177
KNLDRF+ NS+LLATD+AARGLDIP ++HVIHY +PR+++ +IHR+GRTARA +G +
Sbjct: 511 KNLDRFKSTPNSVLLATDIAARGLDIPAVDHVIHYQIPRSADTFIHRNGRTARAMRKGFS 570
Query: 1178 LVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-N 1235
L++ DE + + SL + D+P+ ++ ++L +K R+ LA+ I+ + KIKK N
Sbjct: 571 LLMCAPDERRVVKALLLSLGRDDADIPEISVELNLLDKLKARVQLARQIDTAQHKIKKAN 630
Query: 1236 RPDNWL 1241
W+
Sbjct: 631 HERTWM 636
Score = 325 bits (832), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 195/545 (35%), Positives = 291/545 (53%), Gaps = 136/545 (24%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ W +++ +++ L+ +GF TPT IQS +P A+ R DIVG AETGSGKTLA+G+P
Sbjct: 128 LPNWHSYSLHPHLLQILHHQGFTTPTPIQSKSLPKAMEGR-DIVGVAETGSGKTLAYGLP 186
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL ++++ +P+ K + ++ AL+LAPTR
Sbjct: 187 ILHHLLSRSRHPS-------------------------------SKVKRQVQALVLAPTR 215
Query: 270 ELAIQVQNHI---------------LDA-------------------------GKYTPVK 289
ELA+QV +H+ LD K V
Sbjct: 216 ELALQVSDHLNMFARSIEAPIKEETLDVELSETQQLKDKSKGKNVVSGTAKTFSKPPLVS 275
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349
+A +VGGMS +KQ RI+++ IL+ATPGRLW+ ++ +L + YL++DE DRM+
Sbjct: 276 IAAIVGGMSAQKQRRIIDRGVDILIATPGRLWDILEEDDSLAKQLASLRYLILDEADRMV 335
Query: 350 ESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV-TMTETSQPRQTFVFSA 408
E+GHF EL NIL R+T+ + R+ +IE PE + V ET QTFVFSA
Sbjct: 336 ENGHFAELDNIL-RLTLRLS---REDVIE----PEFETQDTEVQAHAETEDALQTFVFSA 387
Query: 409 TLTHSLKNSLNLKKG-QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467
TL+ L+ +LKKG + + K + P+ L+DL+
Sbjct: 388 TLSKDLQR--DLKKGYRPRIGKKGRSKPA-STLEDLV----------------------- 421
Query: 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC 527
+ D +D+ +P+++D++ + G+ L ESKI C
Sbjct: 422 ---LRLDFRDA-------------------------NPEVIDISPEGGVVSGLQESKIEC 453
Query: 528 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587
+KD YLYYF+L++PGR+LVF +SI ++RLT L+ +L PLH+ + QRQRLKNL
Sbjct: 454 LSADKDIYLYYFLLRYPGRSLVFLSSIDGIRRLTPLMDLLNVKVFPLHSQLEQRQRLKNL 513
Query: 588 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
DRF+ NS+LLATD+AARGLDIP ++HVIHY +PR+++ +IHR+GRTARA +G ++++
Sbjct: 514 DRFKSTPNSVLLATDIAARGLDIPAVDHVIHYQIPRSADTFIHRNGRTARAMRKGFSLLM 573
Query: 648 IESDE 652
DE
Sbjct: 574 CAPDE 578
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKK 1296
D ++HR+GRTARA +G +L++ DE + + SL + D+P+ ++ ++L +K
Sbjct: 552 DTFIHRNGRTARAMRKGFSLLMCAPDERRVVKALLLSLGRDDADIPEISVELNLLDKLKA 611
Query: 1297 RIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDE 1334
R+ LA+ I+ + KIKK N W+++AA+ M+I +D +
Sbjct: 612 RVQLARQIDTAQHKIKKANHERTWMKEAAEAMEIELDSD 650
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 40/99 (40%)
Query: 1356 ALILAPTRELAIQVQNHI---------------LDA------------------------ 1376
AL+LAPTRELA+QV +H+ LD
Sbjct: 208 ALVLAPTRELALQVSDHLNMFARSIEAPIKEETLDVELSETQQLKDKSKGKNVVSGTAKT 267
Query: 1377 -GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
K V +A +VGGMS +KQ RI+++ IL+ATPG L
Sbjct: 268 FSKPPLVSIAAIVGGMSAQKQRRIIDRGVDILIATPGRL 306
>gi|409076944|gb|EKM77312.1| hypothetical protein AGABI1DRAFT_43493, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 670
Score = 357 bits (917), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 215/558 (38%), Positives = 311/558 (55%), Gaps = 119/558 (21%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ EW +++ ++ ALY+KGF++PT IQ+ +P A+ KD+VG A+TGSGKTLA+GIP
Sbjct: 2 LPEWASYSLHPQLLHALYRKGFESPTSIQAAAIPVAVKG-KDVVGVAQTGSGKTLAYGIP 60
Query: 827 ILTGIVNKLE-NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
IL ++++ +P + R + ALILAPT
Sbjct: 61 ILHYLLSQPRPHPNK---------------------------------RRPVKALILAPT 87
Query: 886 RELAIQVQNHILDA---------------------GKYTP-------------------- 904
RELA+QV +H+ + GK P
Sbjct: 88 RELALQVSSHLNECLNPTDRDTSATQNENNPDEAQGKNEPTGNQKGKRKKAVHNLPVKKR 147
Query: 905 ---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
V VA +VGGMS +KQ RI+++ +LV TPGRLW+ I EL + +LV+DE
Sbjct: 148 PPHVSVAAIVGGMSAQKQRRIIDRGVDVLVGTPGRLWDIIGEDDSLAKELKNLRFLVLDE 207
Query: 962 TDRMIESGHFPELKNILDRVTMTE-----------------------------TSQPRQT 992
DRMIESGHF EL+NIL R+T+ E T QT
Sbjct: 208 ADRMIESGHFAELENIL-RLTLREDRCDVWRGDEIPVEYNAMDTNTNEEQKPNTVYDLQT 266
Query: 993 FVFSATLTHSLKNSLNLKKGQSKSKKVSKGD---PSIKRLQDLLNIKS----PKIVDLTE 1045
FV SATL+ L+ +L K+ + K K KG P+ LL + P+I+DL+
Sbjct: 267 FVLSATLSKDLQRNLK-KRWRPKDYKKRKGKNDKPATTLDDLLLRLDFRDPEPEIIDLSP 325
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 1105
+ + TL E+KI C +EKD+YLYYF+L+HPGR+LVF +SI V+RL LL +L
Sbjct: 326 EGKVVSTLQEAKIECLVNEKDTYLYYFLLRHPGRSLVFLSSIDGVRRLMPLLGLLSIKVF 385
Query: 1106 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
PLH+ + QRQRLKNLDRF+ NS+LLATD+AARGLDIP ++HV+H+ +PRT++ YIHRS
Sbjct: 386 PLHSQLEQRQRLKNLDRFKSTPNSVLLATDIAARGLDIPAVDHVVHFQIPRTADSYIHRS 445
Query: 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKKRIDLAKS 1224
GRTARA N+G ++++I DE + + SL + + D+P+ +D ++L +K+R+ LA+
Sbjct: 446 GRTARAMNKGFSMLVIGPDERRVVKALMGSLSRDERDIPELSVDLNMLDKLKERVQLARQ 505
Query: 1225 IEYLESKIKKNRPD-NWL 1241
IE + +++KN + NW+
Sbjct: 506 IEQRQHQVQKNNYEKNWV 523
Score = 206 bits (524), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 144/400 (36%), Positives = 203/400 (50%), Gaps = 95/400 (23%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ EW +++ ++ ALY+KGF++PT IQ+ +P A+ KD+VG A+TGSGKTLA+GIP
Sbjct: 2 LPEWASYSLHPQLLHALYRKGFESPTSIQAAAIPVAVKG-KDVVGVAQTGSGKTLAYGIP 60
Query: 210 ILTGIVNKLE-NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
IL ++++ +P + R + ALILAPT
Sbjct: 61 ILHYLLSQPRPHPNK---------------------------------RRPVKALILAPT 87
Query: 269 RELAIQVQNHILDA---------------------GKYTP-------------------- 287
RELA+QV +H+ + GK P
Sbjct: 88 RELALQVSSHLNECLNPTDRDTSATQNENNPDEAQGKNEPTGNQKGKRKKAVHNLPVKKR 147
Query: 288 ---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
V VA +VGGMS +KQ RI+++ +LV TPGRLW+ I EL + +LV+DE
Sbjct: 148 PPHVSVAAIVGGMSAQKQRRIIDRGVDVLVGTPGRLWDIIGEDDSLAKELKNLRFLVLDE 207
Query: 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE----TSQP 400
DRMIESGHF EL+NIL R+T+ E R + P N +D T E T
Sbjct: 208 ADRMIESGHFAELENIL-RLTLRED---RCDVWRGDEIPVEYNAMDTNTNEEQKPNTVYD 263
Query: 401 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG---DPSIKRLQDLLNIKS----PKIVD 453
QTFV SATL+ L+ +L K+ + K K KG P+ LL + P+I+D
Sbjct: 264 LQTFVLSATLSKDLQRNLK-KRWRPKDYKKRKGKNDKPATTLDDLLLRLDFRDPEPEIID 322
Query: 454 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
L+ + + TL E+KI C +EKD+YLYYF+L+HPGR+L
Sbjct: 323 LSPEGKVVSTLQEAKIECLVNEKDTYLYYFLLRHPGRSLV 362
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 85/148 (57%), Positives = 116/148 (78%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
P+I+DL+ + + TL E+KI C +EKD+YLYYF+L+HPGR+LVF +SI V+RL LL
Sbjct: 318 PEIIDLSPEGKVVSTLQEAKIECLVNEKDTYLYYFLLRHPGRSLVFLSSIDGVRRLMPLL 377
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PLH+ + QRQRLKNLDRF+ NS+LLATD+AARGLDIP ++HV+H+ +PRT
Sbjct: 378 GLLSIKVFPLHSQLEQRQRLKNLDRFKSTPNSVLLATDIAARGLDIPAVDHVVHFQIPRT 437
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDE 652
++ YIHRSGRTARA N+G ++++I DE
Sbjct: 438 ADSYIHRSGRTARAMNKGFSMLVIGPDE 465
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKK 1296
D+++HRSGRTARA N+G ++++I DE + + SL + + D+P+ +D ++L +K+
Sbjct: 439 DSYIHRSGRTARAMNKGFSMLVIGPDERRVVKALMGSLSRDERDIPELSVDLNMLDKLKE 498
Query: 1297 RIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDE 1334
R+ LA+ IE + +++KN + NW+++ A+ + + +D +
Sbjct: 499 RVQLARQIEQRQHQVQKNNYEKNWVKETAEALGVDLDSD 537
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 44/110 (40%)
Query: 1349 NLRYSWDALILAPTRELAIQVQNHILDA---------------------GKYTP------ 1381
N R ALILAPTRELA+QV +H+ + GK P
Sbjct: 74 NKRRPVKALILAPTRELALQVSSHLNECLNPTDRDTSATQNENNPDEAQGKNEPTGNQKG 133
Query: 1382 -----------------VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
V VA +VGGMS +KQ RI+++ +LV TPG L
Sbjct: 134 KRKKAVHNLPVKKRPPHVSVAAIVGGMSAQKQRRIIDRGVDVLVGTPGRL 183
>gi|336375445|gb|EGO03781.1| hypothetical protein SERLA73DRAFT_46424 [Serpula lacrymans var.
lacrymans S7.3]
Length = 615
Score = 357 bits (917), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 204/540 (37%), Positives = 305/540 (56%), Gaps = 102/540 (18%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ W +++ +++ L+ +GF TPT IQS +P A+ R DIVG AETGSGKTLA+G+P
Sbjct: 31 LPNWHSYSLHPHLLQILHHQGFTTPTPIQSKSLPKAMEGR-DIVGVAETGSGKTLAYGLP 89
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL ++++ +P+ K + ++ AL+LAPTR
Sbjct: 90 ILHHLLSRSRHPSS-------------------------------KVKRQVQALVLAPTR 118
Query: 887 ELAIQVQNHI---------------LDA-------------------------GKYTPVK 906
ELA+QV +H+ LD K V
Sbjct: 119 ELALQVSDHLNMFARSIEAPIKEETLDVELSETQQLKDKSKGKNVVSGTAKTFSKPPLVS 178
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966
+A +VGGMS +KQ RI+++ IL+ATPGRLW+ ++ +L + YL++DE DRM+
Sbjct: 179 IAAIVGGMSAQKQRRIIDRGVDILIATPGRLWDILEEDDSLAKQLASLRYLILDEADRMV 238
Query: 967 ESGHFPELKNILDRVTM----------------TETSQPRQTFVFSATLTHSLKNSLNLK 1010
E+GHF EL NIL R+T+ ET QTFVFSATL+ L+ +LK
Sbjct: 239 ENGHFAELDNIL-RLTLRLSRFFETQDTEVQAHAETEDALQTFVFSATLSKDLQR--DLK 295
Query: 1011 KG-------QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 1063
KG + +SK S + + RL +P+++D++ + G+ L ESKI C
Sbjct: 296 KGYRPRIGKKGRSKPASTLEDLVLRLD--FRDANPEVIDISPEGGVVSGLQESKIECLSA 353
Query: 1064 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
+KD YLYYF+L++PGR+LVF +SI ++RLT L+ +L PLH+ + QRQRLKNLDRF
Sbjct: 354 DKDIYLYYFLLRYPGRSLVFLSSIDGIRRLTPLMDLLNVKVFPLHSQLEQRQRLKNLDRF 413
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ NS+LLATD+AARGLDIP ++HVIHY +PR+++ +IHR+GRTARA +G +L++
Sbjct: 414 KSTPNSVLLATDIAARGLDIPAVDHVIHYQIPRSADTFIHRNGRTARAMRKGFSLLMCAP 473
Query: 1184 DEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWL 1241
DE + + SL + D+P+ ++ ++L +K R+ LA+ I+ + KIKK N W+
Sbjct: 474 DERRVVKALLLSLGRDDADIPEISVELNLLDKLKARVQLARQIDTAQHKIKKANHERTWM 533
Score = 305 bits (781), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 189/560 (33%), Positives = 281/560 (50%), Gaps = 172/560 (30%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ W +++ +++ L+ +GF TPT IQS +P A+ R DIVG AETGSGKTLA+G+P
Sbjct: 31 LPNWHSYSLHPHLLQILHHQGFTTPTPIQSKSLPKAMEGR-DIVGVAETGSGKTLAYGLP 89
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL ++++ +P+ K + ++ AL+LAPTR
Sbjct: 90 ILHHLLSRSRHPSS-------------------------------KVKRQVQALVLAPTR 118
Query: 270 ELAIQVQNHI---------------LDA-------------------------GKYTPVK 289
ELA+QV +H+ LD K V
Sbjct: 119 ELALQVSDHLNMFARSIEAPIKEETLDVELSETQQLKDKSKGKNVVSGTAKTFSKPPLVS 178
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349
+A +VGGMS +KQ RI+++ IL+ATPGRLW+ ++ +L + YL++DE DRM+
Sbjct: 179 IAAIVGGMSAQKQRRIIDRGVDILIATPGRLWDILEEDDSLAKQLASLRYLILDEADRMV 238
Query: 350 ESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM--------------- 394
E+G HF EL NIL R+T+
Sbjct: 239 ENG----------------------------HFAELDNIL-RLTLRLSRFFETQDTEVQA 269
Query: 395 -TETSQPRQTFVFSATLTHSLKNSLNLKKG-QSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
ET QTFVFSATL+ L+ +LKKG + + K + P+ L+DL+
Sbjct: 270 HAETEDALQTFVFSATLSKDLQR--DLKKGYRPRIGKKGRSKPA-STLEDLV-------- 318
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
+ D +D+ +P+++D++
Sbjct: 319 ------------------LRLDFRDA-------------------------NPEVIDISP 335
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
+ G+ L ESKI C +KD YLYYF+L++PGR+LVF +SI ++RLT L+ +L
Sbjct: 336 EGGVVSGLQESKIECLSADKDIYLYYFLLRYPGRSLVFLSSIDGIRRLTPLMDLLNVKVF 395
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLH+ + QRQRLKNLDRF+ NS+LLATD+AARGLDIP ++HVIHY +PR+++ +IHR+
Sbjct: 396 PLHSQLEQRQRLKNLDRFKSTPNSVLLATDIAARGLDIPAVDHVIHYQIPRSADTFIHRN 455
Query: 633 GRTARANNEGLTVVLIESDE 652
GRTARA +G ++++ DE
Sbjct: 456 GRTARAMRKGFSLLMCAPDE 475
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKK 1296
D ++HR+GRTARA +G +L++ DE + + SL + D+P+ ++ ++L +K
Sbjct: 449 DTFIHRNGRTARAMRKGFSLLMCAPDERRVVKALLLSLGRDDADIPEISVELNLLDKLKA 508
Query: 1297 RIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDE 1334
R+ LA+ I+ + KIKK N W+++AA+ M+I +D +
Sbjct: 509 RVQLARQIDTAQHKIKKANHERTWMKEAAEAMEIELDSD 547
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 40/99 (40%)
Query: 1356 ALILAPTRELAIQVQNHI---------------LDA------------------------ 1376
AL+LAPTRELA+QV +H+ LD
Sbjct: 111 ALVLAPTRELALQVSDHLNMFARSIEAPIKEETLDVELSETQQLKDKSKGKNVVSGTAKT 170
Query: 1377 -GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
K V +A +VGGMS +KQ RI+++ IL+ATPG L
Sbjct: 171 FSKPPLVSIAAIVGGMSAQKQRRIIDRGVDILIATPGRL 209
>gi|115459372|ref|NP_001053286.1| Os04g0510400 [Oryza sativa Japonica Group]
gi|158513183|sp|A2XVF7.2|RH13_ORYSI RecName: Full=DEAD-box ATP-dependent RNA helicase 13
gi|158513708|sp|A3AVH5.2|RH13_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 13
gi|32488303|emb|CAE03369.1| OSJNBb0065L13.12 [Oryza sativa Japonica Group]
gi|113564857|dbj|BAF15200.1| Os04g0510400 [Oryza sativa Japonica Group]
gi|116311068|emb|CAH67998.1| OSIGBa0157K09-H0214G12.9 [Oryza sativa Indica Group]
Length = 832
Score = 357 bits (916), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 209/536 (38%), Positives = 310/536 (57%), Gaps = 53/536 (9%)
Query: 754 EVDTSNNEDMFV---QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
+++ NN+ + + ++ W + + +I A+ + GFK PT IQ P+A KD++
Sbjct: 181 DMEQDNNDGLILGEDEVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVI 240
Query: 811 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870
GAAETGSGKTLAFG+PIL ++ EE E L E E +E ES
Sbjct: 241 GAAETGSGKTLAFGLPILQRLL-------EEQEKAMRLSREDESTQDENSRESP------ 287
Query: 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
L ALIL PTRELA QV +H+ +A K+ ++V +VGG+S EKQ R+L + P I+
Sbjct: 288 ------LRALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIV 341
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS--- 987
V TPGRLWE + G+ HL +L+ +++ V+DE DRMIE GHF EL++I++ + +T S
Sbjct: 342 VGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIEMLPVTNGSDEQ 401
Query: 988 ----------------QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQ 1030
+ RQTFVFSATL S LK+G +K + D SI+ L
Sbjct: 402 TVGTTPSCETVPILQIKKRQTFVFSATLALSANFRKKLKRGLVTAKASASTDLSSIEALS 461
Query: 1031 DLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSIS 1088
+K + +IVDLT+ + + L ES I C D+KD+YLYY + H GRT++FC SI+
Sbjct: 462 KQARMKPNAEIVDLTKASILPEKLEESFIECSDDDKDAYLYYILSVHGQGRTIIFCTSIA 521
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
+++ L+ +L +L + L HA M QR R+K +DRFR+ NSIL+ATD ARG+D +
Sbjct: 522 ALRHLSSILRVLGINVLTNHAQMQQRARMKAVDRFRESENSILVATDGFARGMDFDDVRT 581
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208
VIHY +P ++++YIHRSGRTAR + G ++ LI + + + SL K+ +L FP+D
Sbjct: 582 VIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADKAKFYSLCKSLSKE-NLQQFPVD 640
Query: 1209 ESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSGRTARANNEGLTLVLIESD 1263
+ + + R+ LA+ I+ + K ++N +WL R N E + L+L SD
Sbjct: 641 HAYMPAVMNRLTLARQIDKITRKNSQENANKSWLQR-------NAESMGLLLETSD 689
Score = 311 bits (796), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 193/516 (37%), Positives = 283/516 (54%), Gaps = 86/516 (16%)
Query: 137 EVDTSNNEDMFV---QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
+++ NN+ + + ++ W + + +I A+ + GFK PT IQ P+A KD++
Sbjct: 181 DMEQDNNDGLILGEDEVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVI 240
Query: 194 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 253
GAAETGSGKTLAFG+PIL ++ EE E L E E +E ES
Sbjct: 241 GAAETGSGKTLAFGLPILQRLL-------EEQEKAMRLSREDESTQDENSRESP------ 287
Query: 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
L ALIL PTRELA QV +H+ +A K+ ++V +VGG+S EKQ R+L + P I+
Sbjct: 288 ------LRALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIV 341
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
V TPGRLWE + G+ HL +L+ +++ V+DE DRMIE GHF EL++I++ + +T S
Sbjct: 342 VGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIEMLPVTNGSD-E 400
Query: 374 QTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
QT+ G P + V + + + RQTFVFSATL S N +K K+ +G
Sbjct: 401 QTV---GTTPSCET----VPILQIKK-RQTFVFSATLALSA----NFRK------KLKRG 442
Query: 434 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
L+ K+ DL+ ++K P
Sbjct: 443 ---------LVTAKASASTDLSSIEALSKQAR--------------------MKP----- 468
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCN 552
+ +IVDLT+ + + L ES I C D+KD+YLYY + H GRT++FC
Sbjct: 469 ----------NAEIVDLTKASILPEKLEESFIECSDDDKDAYLYYILSVHGQGRTIIFCT 518
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
SI++++ L+ +L +L + L HA M QR R+K +DRFR+ NSIL+ATD ARG+D
Sbjct: 519 SIAALRHLSSILRVLGINVLTNHAQMQQRARMKAVDRFRESENSILVATDGFARGMDFDD 578
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+ VIHY +P ++++YIHRSGRTAR + G ++ LI
Sbjct: 579 VRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALI 614
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA QV +H+ +A K+ ++V +VGG+S EKQ R+L + P I+V TPG L
Sbjct: 290 ALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRL 348
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTAR + G ++ LI + + + SL K+ +L FP+D + + + R
Sbjct: 592 DVYIHRSGRTARKSMAGCSIALISPADKAKFYSLCKSLSKE-NLQQFPVDHAYMPAVMNR 650
Query: 1298 IDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIID 1332
+ LA+ I+ + K ++N +WL++ A+ M ++++
Sbjct: 651 LTLARQIDKITRKNSQENANKSWLQRNAESMGLLLE 686
>gi|222629189|gb|EEE61321.1| hypothetical protein OsJ_15428 [Oryza sativa Japonica Group]
Length = 776
Score = 357 bits (916), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 209/536 (38%), Positives = 310/536 (57%), Gaps = 53/536 (9%)
Query: 754 EVDTSNNEDMFV---QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
+++ NN+ + + ++ W + + +I A+ + GFK PT IQ P+A KD++
Sbjct: 125 DMEQDNNDGLILGEDEVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVI 184
Query: 811 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870
GAAETGSGKTLAFG+PIL ++ EE E L E E +E ES
Sbjct: 185 GAAETGSGKTLAFGLPILQRLL-------EEQEKAMRLSREDESTQDENSRESP------ 231
Query: 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
L ALIL PTRELA QV +H+ +A K+ ++V +VGG+S EKQ R+L + P I+
Sbjct: 232 ------LRALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIV 285
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS--- 987
V TPGRLWE + G+ HL +L+ +++ V+DE DRMIE GHF EL++I++ + +T S
Sbjct: 286 VGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIEMLPVTNGSDEQ 345
Query: 988 ----------------QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQ 1030
+ RQTFVFSATL S LK+G +K + D SI+ L
Sbjct: 346 TVGTTPSCETVPILQIKKRQTFVFSATLALSANFRKKLKRGLVTAKASASTDLSSIEALS 405
Query: 1031 DLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSIS 1088
+K + +IVDLT+ + + L ES I C D+KD+YLYY + H GRT++FC SI+
Sbjct: 406 KQARMKPNAEIVDLTKASILPEKLEESFIECSDDDKDAYLYYILSVHGQGRTIIFCTSIA 465
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
+++ L+ +L +L + L HA M QR R+K +DRFR+ NSIL+ATD ARG+D +
Sbjct: 466 ALRHLSSILRVLGINVLTNHAQMQQRARMKAVDRFRESENSILVATDGFARGMDFDDVRT 525
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208
VIHY +P ++++YIHRSGRTAR + G ++ LI + + + SL K+ +L FP+D
Sbjct: 526 VIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADKAKFYSLCKSLSKE-NLQQFPVD 584
Query: 1209 ESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSGRTARANNEGLTLVLIESD 1263
+ + + R+ LA+ I+ + K ++N +WL R N E + L+L SD
Sbjct: 585 HAYMPAVMNRLTLARQIDKITRKNSQENANKSWLQR-------NAESMGLLLETSD 633
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 193/516 (37%), Positives = 283/516 (54%), Gaps = 86/516 (16%)
Query: 137 EVDTSNNEDMFV---QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
+++ NN+ + + ++ W + + +I A+ + GFK PT IQ P+A KD++
Sbjct: 125 DMEQDNNDGLILGEDEVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVI 184
Query: 194 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 253
GAAETGSGKTLAFG+PIL ++ EE E L E E +E ES
Sbjct: 185 GAAETGSGKTLAFGLPILQRLL-------EEQEKAMRLSREDESTQDENSRESP------ 231
Query: 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
L ALIL PTRELA QV +H+ +A K+ ++V +VGG+S EKQ R+L + P I+
Sbjct: 232 ------LRALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIV 285
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
V TPGRLWE + G+ HL +L+ +++ V+DE DRMIE GHF EL++I++ + +T S
Sbjct: 286 VGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIEMLPVTNGSD-E 344
Query: 374 QTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
QT+ G P + V + + + RQTFVFSATL S N +K K+ +G
Sbjct: 345 QTV---GTTPSCET----VPILQIKK-RQTFVFSATLALSA----NFRK------KLKRG 386
Query: 434 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
L+ K+ DL+ ++K P
Sbjct: 387 ---------LVTAKASASTDLSSIEALSKQAR--------------------MKP----- 412
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCN 552
+ +IVDLT+ + + L ES I C D+KD+YLYY + H GRT++FC
Sbjct: 413 ----------NAEIVDLTKASILPEKLEESFIECSDDDKDAYLYYILSVHGQGRTIIFCT 462
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
SI++++ L+ +L +L + L HA M QR R+K +DRFR+ NSIL+ATD ARG+D
Sbjct: 463 SIAALRHLSSILRVLGINVLTNHAQMQQRARMKAVDRFRESENSILVATDGFARGMDFDD 522
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+ VIHY +P ++++YIHRSGRTAR + G ++ LI
Sbjct: 523 VRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALI 558
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA QV +H+ +A K+ ++V +VGG+S EKQ R+L + P I+V TPG L
Sbjct: 234 ALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRL 292
Score = 57.0 bits (136), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTAR + G ++ LI + + + SL K+ +L FP+D + + + R
Sbjct: 536 DVYIHRSGRTARKSMAGCSIALISPADKAKFYSLCKSLSKE-NLQQFPVDHAYMPAVMNR 594
Query: 1298 IDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIID 1332
+ LA+ I+ + K ++N +WL++ A+ M ++++
Sbjct: 595 LTLARQIDKITRKNSQENANKSWLQRNAESMGLLLE 630
>gi|218195193|gb|EEC77620.1| hypothetical protein OsI_16604 [Oryza sativa Indica Group]
Length = 776
Score = 356 bits (914), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 209/536 (38%), Positives = 310/536 (57%), Gaps = 53/536 (9%)
Query: 754 EVDTSNNEDMFV---QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
+++ NN+ + + ++ W + + +I A+ + GFK PT IQ P+A KD++
Sbjct: 125 DMEQDNNDGLILGEDEVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVI 184
Query: 811 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870
GAAETGSGKTLAFG+PIL ++ EE E L E E +E ES
Sbjct: 185 GAAETGSGKTLAFGLPILQRLL-------EEQEKAMRLSREDESTQDENSRESP------ 231
Query: 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
L ALIL PTRELA QV +H+ +A K+ ++V +VGG+S EKQ R+L + P I+
Sbjct: 232 ------LRALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIV 285
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS--- 987
V TPGRLWE + G+ HL +L+ +++ V+DE DRMIE GHF EL++I++ + +T S
Sbjct: 286 VGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIEMLPVTNGSDEQ 345
Query: 988 ----------------QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQ 1030
+ RQTFVFSATL S LK+G +K + D SI+ L
Sbjct: 346 TVGTTPSCETVPILQIKKRQTFVFSATLALSANFRKKLKRGLVTAKASASTDLSSIEALS 405
Query: 1031 DLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSIS 1088
+K + +IVDLT+ + + L ES I C D+KD+YLYY + H GRT++FC SI+
Sbjct: 406 KQARMKPNAEIVDLTKASILPEKLEESFIECSDDDKDAYLYYILSVHGQGRTIIFCTSIA 465
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
+++ L+ +L +L + L HA M QR R+K +DRFR+ NSIL+ATD ARG+D +
Sbjct: 466 ALRHLSSILRVLGINVLTNHAQMQQRARMKAVDRFRESENSILVATDGFARGMDFDDVRT 525
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208
VIHY +P ++++YIHRSGRTAR + G ++ LI + + + SL K+ +L FP+D
Sbjct: 526 VIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADKAKFYSLCKSLSKE-NLQQFPVD 584
Query: 1209 ESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSGRTARANNEGLTLVLIESD 1263
+ + + R+ LA+ I+ + K ++N +WL R N E + L+L SD
Sbjct: 585 HAYMPAVMNRLTLARQIDKITRKNSQENANKSWLQR-------NAESMGLLLETSD 633
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 193/516 (37%), Positives = 283/516 (54%), Gaps = 86/516 (16%)
Query: 137 EVDTSNNEDMFV---QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
+++ NN+ + + ++ W + + +I A+ + GFK PT IQ P+A KD++
Sbjct: 125 DMEQDNNDGLILGEDEVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVI 184
Query: 194 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 253
GAAETGSGKTLAFG+PIL ++ EE E L E E +E ES
Sbjct: 185 GAAETGSGKTLAFGLPILQRLL-------EEQEKAMRLSREDESTQDENSRESP------ 231
Query: 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
L ALIL PTRELA QV +H+ +A K+ ++V +VGG+S EKQ R+L + P I+
Sbjct: 232 ------LRALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIV 285
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
V TPGRLWE + G+ HL +L+ +++ V+DE DRMIE GHF EL++I++ + +T S
Sbjct: 286 VGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIEMLPVTNGSD-E 344
Query: 374 QTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
QT+ G P + V + + + RQTFVFSATL S N +K K+ +G
Sbjct: 345 QTV---GTTPSCET----VPILQIKK-RQTFVFSATLALSA----NFRK------KLKRG 386
Query: 434 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
L+ K+ DL+ ++K P
Sbjct: 387 ---------LVTAKASASTDLSSIEALSKQAR--------------------MKP----- 412
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCN 552
+ +IVDLT+ + + L ES I C D+KD+YLYY + H GRT++FC
Sbjct: 413 ----------NAEIVDLTKASILPEKLEESFIECSDDDKDAYLYYILSVHGQGRTIIFCT 462
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
SI++++ L+ +L +L + L HA M QR R+K +DRFR+ NSIL+ATD ARG+D
Sbjct: 463 SIAALRHLSSILRVLGINVLTNHAQMQQRARMKAVDRFRESENSILVATDGFARGMDFDD 522
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+ VIHY +P ++++YIHRSGRTAR + G ++ LI
Sbjct: 523 VRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALI 558
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA QV +H+ +A K+ ++V +VGG+S EKQ R+L + P I+V TPG L
Sbjct: 234 ALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRL 292
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTAR + G ++ LI + + + SL K+ +L FP+D + + + R
Sbjct: 536 DVYIHRSGRTARKSMAGCSIALISPADKAKFYSLCKSLSKE-NLQQFPVDHAYMPAVMNR 594
Query: 1298 IDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIID 1332
+ LA+ I+ + K ++N +WL++ A+ M ++++
Sbjct: 595 LTLARQIDKITRKNSQENANKSWLQRNAESMGLLLE 630
>gi|326675871|ref|XP_003200454.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Danio rerio]
Length = 881
Score = 356 bits (914), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 212/544 (38%), Positives = 292/544 (53%), Gaps = 129/544 (23%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
++ W +PE ++RAL GF PT IQ++V+P A+ R DI+GAAETGSGKTL FGIP
Sbjct: 282 VSSWRDLLVPEPVLRALAVLGFSAPTAIQALVLPPAIRDRLDILGAAETGSGKTLCFGIP 341
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA---------------------- 247
++ I+ E TEE A+ + L+EE
Sbjct: 342 MIHMILQWREQ-TEEHSTPERTHTPAQSLY--LQEEHGEDDDDDDDDDEKKDDEVIDDDE 398
Query: 248 ----------------NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA 291
N + L L+L PTRELA+QV++HI ++T +K A
Sbjct: 399 GGAEGCSAPPDDPDGQNDPDPASGVCRPLLGLVLTPTRELAVQVKHHIDAVAQFTGIKTA 458
Query: 292 CVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES 351
VVGGM+ +KQ R+L + P I++ATPGRLWE I+ H HL +L ++ LV+DE DRM+E
Sbjct: 459 IVVGGMAPQKQHRVLMRRPEIIIATPGRLWEMIREKHPHLQDLRQLRCLVLDEADRMVEK 518
Query: 352 GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
G HF EL+++L+ + ++ S RQTFVFSATLT
Sbjct: 519 G----------------------------HFAELESLLELLNTSQFSSRRQTFVFSATLT 550
Query: 412 --HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469
HSL + L KK + + P+ +R K+ L EK+G+
Sbjct: 551 LVHSLPSRLQQKKKKQR--------PAEQR---------SKLQLLMEKVGVRD------- 586
Query: 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH 529
PK++DLT K +TLTE++I C
Sbjct: 587 ----------------------------------KPKVIDLTRKQATVETLTETRISCTK 612
Query: 530 DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 589
++KD +LYYF+LQ PGR++VF NSI+ +KRL LL +L C+PL LHA+M+Q+QRLKNL+R
Sbjct: 613 EDKDLFLYYFLLQFPGRSMVFANSIACIKRLYALLHLLDCTPLMLHANMHQKQRLKNLER 672
Query: 590 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIE 649
F + +LL TDVAARGLDIP ++HVIHY VPRTSE Y+HRSGRTARA EGL+++LI
Sbjct: 673 FAENTRCVLLTTDVAARGLDIPDVQHVIHYQVPRTSETYVHRSGRTARATREGLSLLLIS 732
Query: 650 SDEI 653
D++
Sbjct: 733 PDDL 736
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+ ++HRSGRTARA EGL+L+LI D++ Y ++ +L+K +LP FP++ ++ +K+R
Sbjct: 709 ETYVHRSGRTARATREGLSLLLISPDDLLNYRRICRTLDKSEELPVFPVESKCMAAVKER 768
Query: 1298 IDLAKSIEYLES-KIKKNRPDNWLEKAAKDMDIIIDDENLI 1337
+DLA IE +E ++ + ++W+ +AA+ MDI +DDE L+
Sbjct: 769 VDLAHRIEKMEYFHSRQTQHNSWVRQAAEAMDIDVDDELLM 809
Score = 70.9 bits (172), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV++HI ++T +K A VVGGM+ +KQ R+L + P I++ATPG L
Sbjct: 429 GLVLTPTRELAVQVKHHIDAVAQFTGIKTAIVVGGMAPQKQHRVLMRRPEIIIATPGRL 487
>gi|443922417|gb|ELU41869.1| delta-sterol C-methyltransferase [Rhizoctonia solani AG-1 IA]
Length = 1600
Score = 354 bits (909), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 216/551 (39%), Positives = 309/551 (56%), Gaps = 80/551 (14%)
Query: 733 KKLKQKKKKKQTYTSAN-KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTP 791
KK + K+QT S + + + T+ D + + EW ++ I +L + F P
Sbjct: 100 KKRGRSSGKRQTNDSTKPSKTIPISTNVTFDQSL-LPEWASMSLHPIISHSLLELSFTNP 158
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851
T IQ +P A R D+VG AETGSGKTLA+ +PIL I L NPT
Sbjct: 159 TPIQKSALPFAQQGR-DVVGVAETGSGKTLAYSLPILQYI---LSNPT------------ 202
Query: 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH---ILDAGKYTP---- 904
+ KL ALILAPTRELA+QV H ++ AG +
Sbjct: 203 -------------------SNSSRKLAALILAPTRELALQVCEHLKKVISAGASSSNGGV 243
Query: 905 --VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ--LGHFHLTE-LYKINYLVI 959
V +A +VGG+S +KQ RIL + I+VATPGRLW+ + + L E + + +LV+
Sbjct: 244 PRVSIAAIVGGLSVQKQRRILERGADIIVATPGRLWDVLGEVFSVYLLAERIRSVQFLVL 303
Query: 960 DETDRMIESGHFPELKNIL-----------------DRVTMTET-----SQPR----QTF 993
DE DRM+E GHF EL NI+ D V T S P QTF
Sbjct: 304 DEADRMVEEGHFQELDNIVKLTVRRKEPEEQDEMAGDPVFAEATAAAVDSAPANTEMQTF 363
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIGITK 1051
VFSAT++ L+ +NL + +K K + ++ L L+ + +P IVDL+ + G
Sbjct: 364 VFSATMSKELQ--INLSRRSTKRKNKDQKGSTLDDLLMKLDFRDPNPAIVDLSPEYGKVS 421
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTES+I C +KD YLYYF+L++PGR+LVF +SI ++RLT ++ L+ PLH+ +
Sbjct: 422 TLTESRIECVSGDKDFYLYYFLLRYPGRSLVFVSSIDGIRRLTPIMEQLQLKVFPLHSQL 481
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
QRQRLKNLDRF+ +++L+ATDVAARGLDIP ++HVIHY +PRT++ Y+HR+GRTARA
Sbjct: 482 QQRQRLKNLDRFKSTPSAVLIATDVAARGLDIPSVDHVIHYQLPRTADAYVHRNGRTARA 541
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
EG +L+LI +E + + SL++ + + PI+ +L +K R+ LA+ I+ + K
Sbjct: 542 QREGFSLLLIAPNERGIMKGLMESLKRAEPIVELPIEHDILDRLKHRVQLARQIDAAQHK 601
Query: 1232 IKK-NRPDNWL 1241
+KK N NWL
Sbjct: 602 VKKDNHEKNWL 612
Score = 315 bits (806), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 205/551 (37%), Positives = 285/551 (51%), Gaps = 109/551 (19%)
Query: 116 KKLKQKKKKKQTYTSAN-KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTP 174
KK + K+QT S + + + T+ D + + EW ++ I +L + F P
Sbjct: 100 KKRGRSSGKRQTNDSTKPSKTIPISTNVTFDQSL-LPEWASMSLHPIISHSLLELSFTNP 158
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234
T IQ +P A R D+VG AETGSGKTLA+ +PIL I L NPT
Sbjct: 159 TPIQKSALPFAQQGR-DVVGVAETGSGKTLAYSLPILQYI---LSNPT------------ 202
Query: 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH---ILDAGKYTP---- 287
+ KL ALILAPTRELA+QV H ++ AG +
Sbjct: 203 -------------------SNSSRKLAALILAPTRELALQVCEHLKKVISAGASSSNGGV 243
Query: 288 --VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ--LGHFHLTE-LYKINYLVI 342
V +A +VGG+S +KQ RIL + I+VATPGRLW+ + + L E + + +LV+
Sbjct: 244 PRVSIAAIVGGLSVQKQRRILERGADIIVATPGRLWDVLGEVFSVYLLAERIRSVQFLVL 303
Query: 343 DETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402
DE DRM+E GHF EL NI+ + + + M F E V + Q
Sbjct: 304 DEADRMVEEGHFQELDNIVKLTVRRKEPEEQDEMAGDPVFAEATAAA--VDSAPANTEMQ 361
Query: 403 TFVFSATLTHSLKNSLNLKKGQSKSK-KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
TFVFSAT++ L+ +NL + +K K K KG L DLL
Sbjct: 362 TFVFSATMSKELQ--INLSRRSTKRKNKDQKG----STLDDLL----------------- 398
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
K D +D +P IVDL+ + G TLT
Sbjct: 399 ---------MKLDFRD-------------------------PNPAIVDLSPEYGKVSTLT 424
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
ES+I C +KD YLYYF+L++PGR+LVF +SI ++RLT ++ L+ PLH+ + QR
Sbjct: 425 ESRIECVSGDKDFYLYYFLLRYPGRSLVFVSSIDGIRRLTPIMEQLQLKVFPLHSQLQQR 484
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRLKNLDRF+ +++L+ATDVAARGLDIP ++HVIHY +PRT++ Y+HR+GRTARA E
Sbjct: 485 QRLKNLDRFKSTPSAVLIATDVAARGLDIPSVDHVIHYQLPRTADAYVHRNGRTARAQRE 544
Query: 642 GLTVVLIESDE 652
G +++LI +E
Sbjct: 545 GFSLLLIAPNE 555
Score = 70.5 bits (171), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HR+GRTARA EG +L+LI +E + + SL++ + + PI+ +L +K R
Sbjct: 529 DAYVHRNGRTARAQREGFSLLLIAPNERGIMKGLMESLKRAEPIVELPIEHDILDRLKHR 588
Query: 1298 IDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDE 1334
+ LA+ I+ + K+KK N NWL++ A+ ++I +D +
Sbjct: 589 VQLARQIDAAQHKVKKDNHEKNWLKETAEALEIELDSD 626
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 9/68 (13%)
Query: 1356 ALILAPTRELAIQVQNH---ILDAGKYTP------VKVACVVGGMSTEKQLRILNKCPHI 1406
ALILAPTRELA+QV H ++ AG + V +A +VGG+S +KQ RIL + I
Sbjct: 211 ALILAPTRELALQVCEHLKKVISAGASSSNGGVPRVSIAAIVGGLSVQKQRRILERGADI 270
Query: 1407 LVATPGAL 1414
+VATPG L
Sbjct: 271 IVATPGRL 278
>gi|392561989|gb|EIW55170.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 677
Score = 353 bits (907), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 224/597 (37%), Positives = 318/597 (53%), Gaps = 117/597 (19%)
Query: 746 TSANKELLEVDTSNNEDMF---VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSA 802
+ A E L+VD + F + W F + + R+LY + F PT IQ+ +P A
Sbjct: 11 SGAPVEKLDVDMLPDPITFDSETLLPAWNTFQLHPQLARSLYARKFTEPTPIQAQTLPLA 70
Query: 803 LLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEE 862
L R D+VG AETGSGKTLA+G+PIL ++ E
Sbjct: 71 LKNR-DVVGVAETGSGKTLAYGLPILHHLLT----------------------------E 101
Query: 863 SANTTEFVKKTRNKLYALILAPTRELAIQVQNH-----------ILDAG----------- 900
+ + KTR + ALI+ PTRELA+QV +H + DAG
Sbjct: 102 AYSRPIPSSKTRRPVRALIVTPTRELALQVSSHLNACLTHADVEVDDAGPAEGASDESSK 161
Query: 901 ----------------------KYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
K P V VA +VGGMS +KQ R+L++ +LVATPGRL
Sbjct: 162 DKSKPKAKGKGKAKAEVQGDKPKSPPLVCVAAIVGGMSAQKQRRVLSRGVDVLVATPGRL 221
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM----TETSQPR--- 990
W+ IQ T++ + +LV+DE DRMIESGHF E+ NIL R+T+ E +P
Sbjct: 222 WDIIQEDDELATQIENLRFLVLDEADRMIESGHFAEMDNIL-RLTLRKQDDEIIEPENQE 280
Query: 991 ---------------QTFVFSATLTHSLKNSLNLKK---GQSKSKKVSKGDPSIKRLQDL 1032
QTFVFSATL+ L+ NLKK G+ + L+
Sbjct: 281 GEAEDSKEDVRAGELQTFVFSATLSKDLQK--NLKKRTHGRRRKNDKPASTLDDLLLRLD 338
Query: 1033 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKR 1092
P +VD++ + TLTESKI C +KD+YLYYF+L++PGRTLVF ++I ++R
Sbjct: 339 FRDPEPAVVDISPVGSVVATLTESKIECLVTDKDAYLYYFLLRYPGRTLVFLSAIDGIRR 398
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152
L L+ +L PLH+ + QRQRLKNLDRF+ ++LLATD+AARGLD+P ++HV+HY
Sbjct: 399 LLPLMDLLGVHAFPLHSQLEQRQRLKNLDRFKSTPGAVLLATDIAARGLDVPAVDHVVHY 458
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESV 1211
VPRT++ Y+HR+GRTARA G +L++ DE + + ++L ++ D +P+ P++ +
Sbjct: 459 QVPRTADAYVHRNGRTARAMRRGFSLLMCVPDERKVVRALMHNLNRQEDEVPEMPVELHM 518
Query: 1212 LSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHRSGRTARANNEGLTLVL---IESDE 1264
L +K RI LA+SI+ + KIKK N NWL + E + LVL +ESD+
Sbjct: 519 LDKLKARIQLARSIDNAQHKIKKENHERNWLKETA-------EAMELVLDSDLESDD 568
Score = 284 bits (726), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 204/595 (34%), Positives = 283/595 (47%), Gaps = 149/595 (25%)
Query: 129 TSANKELLEVDTSNNEDMF---VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSA 185
+ A E L+VD + F + W F + + R+LY + F PT IQ+ +P A
Sbjct: 11 SGAPVEKLDVDMLPDPITFDSETLLPAWNTFQLHPQLARSLYARKFTEPTPIQAQTLPLA 70
Query: 186 LLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEE 245
L R D+VG AETGSGKTLA+G+PIL ++ E
Sbjct: 71 LKNR-DVVGVAETGSGKTLAYGLPILHHLLT----------------------------E 101
Query: 246 SANTTEFVKKTRNKLYALILAPTRELAIQVQNH-----------ILDAG----------- 283
+ + KTR + ALI+ PTRELA+QV +H + DAG
Sbjct: 102 AYSRPIPSSKTRRPVRALIVTPTRELALQVSSHLNACLTHADVEVDDAGPAEGASDESSK 161
Query: 284 ----------------------KYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
K P V VA +VGGMS +KQ R+L++ +LVATPGRL
Sbjct: 162 DKSKPKAKGKGKAKAEVQGDKPKSPPLVCVAAIVGGMSAQKQRRVLSRGVDVLVATPGRL 221
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
W+ IQ T++ + +LV+DE DRMIESGHF E+ NIL R+T+ + Q + +
Sbjct: 222 WDIIQEDDELATQIENLRFLVLDEADRMIESGHFAEMDNIL-RLTLRK--QDDEIIEPEN 278
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK---GQSKSKKVSKGDPSI 437
E ++ + V E QTFVFSATL+ L+ NLKK G+ +
Sbjct: 279 QEGEAEDSKEDVRAGEL----QTFVFSATLSKDLQK--NLKKRTHGRRRKNDKPASTLDD 332
Query: 438 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497
L+ P +VD++ + TLTESKI C +KD+YLYYF+L++PGRTL
Sbjct: 333 LLLRLDFRDPEPAVVDISPVGSVVATLTESKIECLVTDKDAYLYYFLLRYPGRTL----- 387
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
V L+ GI + L +L H
Sbjct: 388 ----------VFLSAIDGIRRLLPLMDLLGVH---------------------------- 409
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617
PLH+ + QRQRLKNLDRF+ ++LLATD+AARGLD+P ++HV+
Sbjct: 410 -------------AFPLHSQLEQRQRLKNLDRFKSTPGAVLLATDIAARGLDVPAVDHVV 456
Query: 618 HYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE----IPLKTKFNLQEEENNE 668
HY VPRT++ Y+HR+GRTARA G ++++ DE L N QE+E E
Sbjct: 457 HYQVPRTADAYVHRNGRTARAMRRGFSLLMCVPDERKVVRALMHNLNRQEDEVPE 511
Score = 70.9 bits (172), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 65/99 (65%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKK 1296
D ++HR+GRTARA G +L++ DE + + ++L ++ D +P+ P++ +L +K
Sbjct: 465 DAYVHRNGRTARAMRRGFSLLMCVPDERKVVRALMHNLNRQEDEVPEMPVELHMLDKLKA 524
Query: 1297 RIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDE 1334
RI LA+SI+ + KIKK N NWL++ A+ M++++D +
Sbjct: 525 RIQLARSIDNAQHKIKKENHERNWLKETAEAMELVLDSD 563
Score = 47.8 bits (112), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 45/104 (43%)
Query: 1356 ALILAPTRELAIQVQNH-----------ILDAG--------------------------- 1377
ALI+ PTRELA+QV +H + DAG
Sbjct: 118 ALIVTPTRELALQVSSHLNACLTHADVEVDDAGPAEGASDESSKDKSKPKAKGKGKAKAE 177
Query: 1378 ------KYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
K P V VA +VGGMS +KQ R+L++ +LVATPG L
Sbjct: 178 VQGDKPKSPPLVCVAAIVGGMSAQKQRRVLSRGVDVLVATPGRL 221
>gi|297834580|ref|XP_002885172.1| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis lyrata subsp.
lyrata]
gi|297331012|gb|EFH61431.1| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis lyrata subsp.
lyrata]
Length = 831
Score = 353 bits (905), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 202/507 (39%), Positives = 297/507 (58%), Gaps = 43/507 (8%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
E++ + + W + +++++Y GFK PT+IQ A KD++GAAETGSGK
Sbjct: 180 GEEIPPEFSAWGLMRLHPLLMKSIYHLGFKQPTEIQKACFSIAAYQGKDVIGAAETGSGK 239
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879
TLAFG+PIL +++ E E L L+ E A L A
Sbjct: 240 TLAFGLPILQRLLD---------------EREKVGKLYALKGEKAQKY----AADGYLRA 280
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LI+ PTRELA+QV +H+ +A + VKV +VGGMS+ KQ R+L P I+V TPGRLWE
Sbjct: 281 LIITPTRELALQVTDHLKNAAENLNVKVVPIVGGMSSAKQERLLKGKPEIVVGTPGRLWE 340
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE-------------- 985
+ G HL EL+ +++ V+DE DRM+ESGHF EL++I+D + +T+
Sbjct: 341 LMSAGEKHLVELHSLSFFVLDEADRMVESGHFRELQSIIDLLPVTDRPNEGKMQTVQSSD 400
Query: 986 --TSQP---RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKRLQDLLNIK-SP 1038
++ P RQTFVFSAT+ S LK+G SKSK S G+ SI+ L + ++ S
Sbjct: 401 TVSNAPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKPSSSGEVNSIEVLSERAGMRDSV 460
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLL 1097
I+DLT + + ES I C+ +EKD+YLYY + H GRT+VFC S+++++ + LL
Sbjct: 461 AIIDLTTASILAPKIEESFIKCEEEEKDAYLYYILSVHGQGRTIVFCTSVAALRHICALL 520
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
+L L++ M QR RLK +DRFR N IL+ATDVAARG+DI + VIHY +P +
Sbjct: 521 KILGLDVCKLYSDMKQRARLKAIDRFRASENGILIATDVAARGIDIKNVRTVIHYQLPHS 580
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217
+E+Y+HRSGRTARA +G ++ LI + + + S K+ + FP+D S + ++K
Sbjct: 581 AEVYVHRSGRTARAFADGCSIALIAPSDSSKFYMLCKSFSKET-VKIFPLDSSYMPAVRK 639
Query: 1218 RIDLAKSIEYLESKIKKNRPD-NWLHR 1243
R+ LA+ I+ +E K + + D WL +
Sbjct: 640 RLSLARQIDQIERKGSREKADRTWLEK 666
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 188/510 (36%), Positives = 276/510 (54%), Gaps = 89/510 (17%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
E++ + + W + +++++Y GFK PT+IQ A KD++GAAETGSGK
Sbjct: 180 GEEIPPEFSAWGLMRLHPLLMKSIYHLGFKQPTEIQKACFSIAAYQGKDVIGAAETGSGK 239
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262
TLAFG+PIL +++ E E L L+ E A L A
Sbjct: 240 TLAFGLPILQRLLD---------------EREKVGKLYALKGEKAQKY----AADGYLRA 280
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LI+ PTRELA+QV +H+ +A + VKV +VGGMS+ KQ R+L P I+V TPGRLWE
Sbjct: 281 LIITPTRELALQVTDHLKNAAENLNVKVVPIVGGMSSAKQERLLKGKPEIVVGTPGRLWE 340
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
+ G HL EL+ +++ V+DE DRM+ESGHF EL++I+D + + T +P + +++
Sbjct: 341 LMSAGEKHLVELHSLSFFVLDEADRMVESGHFRELQSIIDLLPV--TDRPNEGKMQTVQS 398
Query: 383 PELKNILDRVTMTETSQP---RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
+ T ++ P RQTFVFSAT+ S LK+G SKSK S G+
Sbjct: 399 SD----------TVSNAPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKPSSSGE----- 443
Query: 440 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499
+ S ++ L+E+ G+ ++
Sbjct: 444 ------VNSIEV--LSERAGMRDSVA---------------------------------- 461
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVK 558
I+DLT + + ES I C+ +EKD+YLYY + H GRT+VFC S+++++
Sbjct: 462 -------IIDLTTASILAPKIEESFIKCEEEEKDAYLYYILSVHGQGRTIVFCTSVAALR 514
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
+ LL +L L++ M QR RLK +DRFR N IL+ATDVAARG+DI + VIH
Sbjct: 515 HICALLKILGLDVCKLYSDMKQRARLKAIDRFRASENGILIATDVAARGIDIKNVRTVIH 574
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
Y +P ++E+Y+HRSGRTARA +G ++ LI
Sbjct: 575 YQLPHSAEVYVHRSGRTARAFADGCSIALI 604
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 1351 RYSWD----ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 1406
+Y+ D ALI+ PTRELA+QV +H+ +A + VKV +VGGMS+ KQ R+L P I
Sbjct: 271 KYAADGYLRALIITPTRELALQVTDHLKNAAENLNVKVVPIVGGMSSAKQERLLKGKPEI 330
Query: 1407 LVATPGAL 1414
+V TPG L
Sbjct: 331 VVGTPGRL 338
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA +G ++ LI + + + S K+ + FP+D S + ++KR+
Sbjct: 584 YVHRSGRTARAFADGCSIALIAPSDSSKFYMLCKSFSKET-VKIFPLDSSYMPAVRKRLS 642
Query: 1300 LAKSIEYLESKIKKNRPD-NWLEKAAKDM 1327
LA+ I+ +E K + + D WLEK A+ M
Sbjct: 643 LARQIDQIERKGSREKADRTWLEKHAESM 671
>gi|170100044|ref|XP_001881240.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643919|gb|EDR08170.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 616
Score = 351 bits (900), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 209/538 (38%), Positives = 306/538 (56%), Gaps = 93/538 (17%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ W K+++ + RAL+ K F +PT IQ +P AL R D++G A+TGSGKTLA+G+P
Sbjct: 28 LPNWHKYSLHPQLSRALHAKSFLSPTPIQEAALPMALAGR-DVIGVAQTGSGKTLAYGLP 86
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL I+++ P+ KT+ L AL+LAPTR
Sbjct: 87 ILHHILSQ-PKPS-------------------------------PKTKRPLRALVLAPTR 114
Query: 887 ELAIQVQNHI----------------------------LDAGKYTP-VKVACVVGGMSTE 917
ELA+QV +H+ A K P V VA +VGGMS++
Sbjct: 115 ELALQVSSHLNALLNHLEDFSSEKTVKNSSKPATTDGKTPAKKPPPHVSVAAIVGGMSSQ 174
Query: 918 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 977
KQ RIL++ +L+ATPGRLW+ ++ E+ I +LV+DE DRMIE+GHF EL+NI
Sbjct: 175 KQRRILDRGVDVLIATPGRLWDLMEDDDTLAREIKNIRFLVLDEADRMIEAGHFAELENI 234
Query: 978 LDRVTMTETS------QP----------------RQTFVFSATLTHSLKNSLNLKKGQSK 1015
L R+T+ E++ +P QTFVFSATL+ L+ +L +
Sbjct: 235 L-RLTLRESACFNDDGEPIHVEEEDSKEGIKKDDLQTFVFSATLSKDLQRNLKKRSKSKG 293
Query: 1016 SKKVSKGDPS------IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
SKK K + + L+ P+++DL+ G+ TL E +I C +KD YL
Sbjct: 294 SKKHYKRNEAPASTLDDLLLRLDFRDPDPEVIDLSPVGGLVSTLQEGRIDCLSADKDVYL 353
Query: 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129
YYF+L++PGR+LVF +SI ++RL L+ +L PLH+ + QRQRLKNLDRF++ NS
Sbjct: 354 YYFLLRYPGRSLVFLSSIDGIRRLMPLVELLNVKAFPLHSQLEQRQRLKNLDRFKNTANS 413
Query: 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLY 1189
+LLATD+AARGLDIP ++HVIH+ +PR+++ YIHR+GRTARA +G ++++ DE L
Sbjct: 414 VLLATDIAARGLDIPAVDHVIHFQIPRSADTYIHRNGRTARAMRKGFSMLMCAPDERRLV 473
Query: 1190 IKMFNSLEKKV-DLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLHRSG 1245
+ SL ++ ++P+ I+ S+L +K R+ LAK IE + KIKK D NW+ +
Sbjct: 474 KALLGSLNREENEIPEMAIELSMLDKLKARVQLAKQIENTQHKIKKTNHDRNWMQETA 531
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 196/560 (35%), Positives = 282/560 (50%), Gaps = 145/560 (25%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ W K+++ + RAL+ K F +PT IQ +P AL R D++G A+TGSGKTLA+G+P
Sbjct: 28 LPNWHKYSLHPQLSRALHAKSFLSPTPIQEAALPMALAGR-DVIGVAQTGSGKTLAYGLP 86
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL I+++ P+ KT+ L AL+LAPTR
Sbjct: 87 ILHHILSQ-PKPS-------------------------------PKTKRPLRALVLAPTR 114
Query: 270 ELAIQVQNHI----------------------------LDAGKYTP-VKVACVVGGMSTE 300
ELA+QV +H+ A K P V VA +VGGMS++
Sbjct: 115 ELALQVSSHLNALLNHLEDFSSEKTVKNSSKPATTDGKTPAKKPPPHVSVAAIVGGMSSQ 174
Query: 301 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 360
KQ RIL++ +L+ATPGRLW+ ++ E+ I +LV+DE DRMIE+GHF EL+NI
Sbjct: 175 KQRRILDRGVDVLIATPGRLWDLMEDDDTLAREIKNIRFLVLDEADRMIEAGHFAELENI 234
Query: 361 LDRVTMTETS------QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 414
L R+T+ E++ +P E K+ L QTFVFSATL+ L
Sbjct: 235 L-RLTLRESACFNDDGEPIHVEEEDSKEGIKKDDL------------QTFVFSATLSKDL 281
Query: 415 KNSLNLKKGQSKSKKVSKGDPS------IKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468
+ +L + SKK K + + L+ P+++DL+ G+ TL E +
Sbjct: 282 QRNLKKRSKSKGSKKHYKRNEAPASTLDDLLLRLDFRDPDPEVIDLSPVGGLVSTLQEGR 341
Query: 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 528
I C +KD YLYYF+L++PGR+L V L+ GI + +
Sbjct: 342 IDCLSADKDVYLYYFLLRYPGRSL---------------VFLSSIDGIRRLMP------- 379
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
L +LL + K P LH+ + QRQRLKNLD
Sbjct: 380 -------------------------------LVELLNV-KAFP--LHSQLEQRQRLKNLD 405
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
RF++ NS+LLATD+AARGLDIP ++HVIH+ +PR+++ YIHR+GRTARA +G ++++
Sbjct: 406 RFKNTANSVLLATDIAARGLDIPAVDHVIHFQIPRSADTYIHRNGRTARAMRKGFSMLMC 465
Query: 649 ESDEIPLKTKF--NLQEEEN 666
DE L +L EEN
Sbjct: 466 APDERRLVKALLGSLNREEN 485
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV-DLPDFPIDESVLSLIKK 1296
D ++HR+GRTARA +G ++++ DE L + SL ++ ++P+ I+ S+L +K
Sbjct: 443 DTYIHRNGRTARAMRKGFSMLMCAPDERRLVKALLGSLNREENEIPEMAIELSMLDKLKA 502
Query: 1297 RIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDI 1329
R+ LAK IE + KIKK D NW+++ A+ + +
Sbjct: 503 RVQLAKQIENTQHKIKKTNHDRNWMQETAEALGV 536
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 33/110 (30%)
Query: 1356 ALILAPTRELAIQVQNHI----------------------------LDAGKYTP-VKVAC 1386
AL+LAPTRELA+QV +H+ A K P V VA
Sbjct: 107 ALVLAPTRELALQVSSHLNALLNHLEDFSSEKTVKNSSKPATTDGKTPAKKPPPHVSVAA 166
Query: 1387 VVGGMSTEKQLRILNKCPHILVATPGALSLKRIDLAKSIEYLESKIKKNR 1436
+VGGMS++KQ RIL++ +L+ATPG L DL + + L +IK R
Sbjct: 167 IVGGMSSQKQRRILDRGVDVLIATPGRL----WDLMEDDDTLAREIKNIR 212
>gi|308498215|ref|XP_003111294.1| hypothetical protein CRE_03826 [Caenorhabditis remanei]
gi|308240842|gb|EFO84794.1| hypothetical protein CRE_03826 [Caenorhabditis remanei]
Length = 761
Score = 351 bits (900), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 207/500 (41%), Positives = 297/500 (59%), Gaps = 56/500 (11%)
Query: 773 FNIPETIIRALYQKGFKT----------------PTKIQSMVMPSALLARKDIVGAAETG 816
F +P I++A+ Q GF + PT IQS V+P A+ +D++GAAETG
Sbjct: 160 FFLPNEILQAVEQMGFVSCAELTKLSKFLFSFSEPTPIQSAVLPVAVRDHQDVLGAAETG 219
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
SGKTLAFGIPI+ + LE+ E DE EEE K R
Sbjct: 220 SGKTLAFGIPIVARL---LESSAENDE----------------EEE-------FKGPR-- 251
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPG 935
AL++APTREL IQ+ HI T +K +VGG++ KQ R++++ P I+VATPG
Sbjct: 252 --ALVIAPTRELVIQIMRHITALIAPTSLKATSIVGGLAQVKQDRVISQQRPDIVVATPG 309
Query: 936 RLWEFIQLGHF--HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
RLW +Q +L E + LV+DETDRM+E G+F EL +IL+RV + QT
Sbjct: 310 RLWAMMQEAEEGDYLAEWKNLKCLVVDETDRMVEEGYFAELTHILNRVHEESDKEKLQTL 369
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITK 1051
VFSATLT + + ++ + + K K I+RL L ++ K++DLT ++G
Sbjct: 370 VFSATLTFA--KAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHKVIDLTRQMGTAG 427
Query: 1052 TLTESKILCKHD-EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
L E++I C + EKD+ L Y + ++ GRT+VF NS+ + +RL +L + P+ LHA
Sbjct: 428 CLVEARINCGNLLEKDTALVYLLTRYQGRTIVFVNSVDAARRLYSILKAINSDPMILHAK 487
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
M Q+QRL+NL++F + +N++L+ATDVAARGLDI GI+HVIHY VP+ EIYIHRSGRTAR
Sbjct: 488 MIQKQRLRNLEKFSESSNAVLIATDVAARGLDIQGIDHVIHYQVPKKVEIYIHRSGRTAR 547
Query: 1171 ANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID-ESVLSLIKKRIDLAKSIEYLE 1229
A++ GLT+VL++ Y+K+ L + DL FPID E ++ IKKR+ LA I+ L
Sbjct: 548 ASHRGLTVVLVDPPSRQFYMKLCKGLNRMQDLDIFPIDFEPLMIAIKKRVRLASEIDSLG 607
Query: 1230 SKIKKNR-PDNWLHRSGRTA 1248
+ KK + ++W ++ R A
Sbjct: 608 FRCKKIKMSESWFEKAAREA 627
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
Query: 506 KIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
K++DLT ++G L E++I C + EKD+ L Y + ++ GRT+VF NS+ + +RL +L
Sbjct: 415 KVIDLTRQMGTAGCLVEARINCGNLLEKDTALVYLLTRYQGRTIVFVNSVDAARRLYSIL 474
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+ P+ LHA M Q+QRL+NL++F + +N++L+ATDVAARGLDI GI+HVIHY VP+
Sbjct: 475 KAINSDPMILHAKMIQKQRLRNLEKFSESSNAVLIATDVAARGLDIQGIDHVIHYQVPKK 534
Query: 625 SEIYIHRSGRTARANNEGLTVVLIE 649
EIYIHRSGRTARA++ GLTVVL++
Sbjct: 535 VEIYIHRSGRTARASHRGLTVVLVD 559
Score = 172 bits (435), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/360 (35%), Positives = 182/360 (50%), Gaps = 82/360 (22%)
Query: 156 FNIPETIIRALYQKGFKT----------------PTKIQSMVMPSALLARKDIVGAAETG 199
F +P I++A+ Q GF + PT IQS V+P A+ +D++GAAETG
Sbjct: 160 FFLPNEILQAVEQMGFVSCAELTKLSKFLFSFSEPTPIQSAVLPVAVRDHQDVLGAAETG 219
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKTLAFGIPI+ + LE+ E DE EEE K R
Sbjct: 220 SGKTLAFGIPIVARL---LESSAENDE-----EEE------------------FKGPR-- 251
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPG 318
AL++APTREL IQ+ HI T +K +VGG++ KQ R++++ P I+VATPG
Sbjct: 252 --ALVIAPTRELVIQIMRHITALIAPTSLKATSIVGGLAQVKQDRVISQQRPDIVVATPG 309
Query: 319 RLWEFIQLGH--FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
RLW +Q +L E + LV+DETDRM+E G+F EL +IL+RV
Sbjct: 310 RLWAMMQEAEEGDYLAEWKNLKCLVVDETDRMVEEGYFAELTHILNRV------------ 357
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
H K L QT VFSATLT + + ++ + + K K
Sbjct: 358 ----HEESDKEKL------------QTLVFSATLTFA--KAQDVAEEEKKKAKELSSQQK 399
Query: 437 IKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTLC 493
I+RL L ++ K++DLT ++G L E++I C + EKD+ L Y + ++ GRT+
Sbjct: 400 IQRLIKLTGLRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTALVYLLTRYQGRTIV 459
Score = 77.4 bits (189), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID-ESVLSLIKKRI 1298
++HRSGRTARA++ GLT+VL++ Y+K+ L + DL FPID E ++ IKKR+
Sbjct: 538 YIHRSGRTARASHRGLTVVLVDPPSRQFYMKLCKGLNRMQDLDIFPIDFEPLMIAIKKRV 597
Query: 1299 DLAKSIEYLESKIKKNR-PDNWLEKAAKDMDIIIDD 1333
LA I+ L + KK + ++W EKAA++ D+ D+
Sbjct: 598 RLASEIDSLGFRCKKIKMSESWFEKAAREADLDYDE 633
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGAL 1414
AL++APTREL IQ+ HI T +K +VGG++ KQ R++++ P I+VATPG L
Sbjct: 252 ALVIAPTRELVIQIMRHITALIAPTSLKATSIVGGLAQVKQDRVISQQRPDIVVATPGRL 311
>gi|196008359|ref|XP_002114045.1| hypothetical protein TRIADDRAFT_58110 [Trichoplax adhaerens]
gi|190583064|gb|EDV23135.1| hypothetical protein TRIADDRAFT_58110 [Trichoplax adhaerens]
Length = 685
Score = 350 bits (898), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 215/560 (38%), Positives = 311/560 (55%), Gaps = 71/560 (12%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V M W +PE +++AL F TPT IQS+ + +A+ RKDI+GAAETGSGKTLA+G
Sbjct: 86 VNMKAWDSLQVPEPVLKALSDMNFLTPTPIQSLSLVAAIRDRKDIIGAAETGSGKTLAYG 145
Query: 825 IPILTGIV------------------NKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866
IPI+ I+ NK E E E+ A+ +++S+N
Sbjct: 146 IPIIQRILQLKADGKKSSKRKWDKANNKTEVIKETPSKKRKHEKGAKPTSSTSDQKSSNK 205
Query: 867 TEF-----VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921
T + + +YAL+L PTRELA+QV++H+ A KYT +K+ +VGG+S KQ R
Sbjct: 206 TTVDNMDNSEVAESPVYALVLTPTRELALQVRDHLRSAAKYTDLKIEAIVGGISQHKQQR 265
Query: 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 981
+LN P I++ATPGR+W+ + G HL + K+ LV+DE DRMIE GH+ EL +IL+R+
Sbjct: 266 LLNYQPEIIIATPGRMWQLLSEGESHLQTINKLPLLVLDEVDRMIEYGHYAELSDILERL 325
Query: 982 TMTETSQP-RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 1040
+P RQT V+SATLT + + +KK S KK+S ++ L K K+
Sbjct: 326 ----PERPLRQTLVYSATLTINKNKKVEMKK--SVKKKLSNEKTFDALIEKLKLDKKVKV 379
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
++L EK +TL E++I C D+K S LY F L PG+TLVF NS+S +K++ + +L
Sbjct: 380 INLIEKDITVETLVEARINCMVDDKLSCLYLFCLLFPGKTLVFANSVSCIKKVVDIFRLL 439
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
+ PLHA M QRQRLKNLDRF+ + IL TDVAARG+DI I++VIH+ +P+ +E+
Sbjct: 440 EQPAYPLHAKMQQRQRLKNLDRFKSSPSGILFCTDVAARGIDIKDIKYVIHFELPKAAEL 499
Query: 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1220
Y+HR GRTARA +E D+P+FP+D S +K+R+
Sbjct: 500 YVHRCGRTARAASE--------------------------DIPEFPLDRSFERDVKRRMV 533
Query: 1221 LAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1280
LA+ I LE N + R R N + +L++ +Y +M L ++
Sbjct: 534 LAERIVSLEKTYVYNTA--IIACGIRNTRMRNYKVINLLMD-----VYYRMTEMLTTQLK 586
Query: 1281 LP--------DFPIDESVLS 1292
LP +FP +LS
Sbjct: 587 LPLTTRNFSGNFPATNEILS 606
Score = 290 bits (742), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 194/536 (36%), Positives = 271/536 (50%), Gaps = 121/536 (22%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V M W +PE +++AL F TPT IQS+ + +A+ RKDI+GAAETGSGKTLA+G
Sbjct: 86 VNMKAWDSLQVPEPVLKALSDMNFLTPTPIQSLSLVAAIRDRKDIIGAAETGSGKTLAYG 145
Query: 208 IPILTGIV------------------NKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249
IPI+ I+ NK E E E+ A+ +++S+N
Sbjct: 146 IPIIQRILQLKADGKKSSKRKWDKANNKTEVIKETPSKKRKHEKGAKPTSSTSDQKSSNK 205
Query: 250 TEF-----VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 304
T + + +YAL+L PTRELA+QV++H+ A KYT +K+ +VGG+S KQ R
Sbjct: 206 TTVDNMDNSEVAESPVYALVLTPTRELALQVRDHLRSAAKYTDLKIEAIVGGISQHKQQR 265
Query: 305 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364
+LN P I++ATPGR+W+ + G HL + K+ LV+DE DRMIE GH+ EL +IL+R
Sbjct: 266 LLNYQPEIIIATPGRMWQLLSEGESHLQTINKLPLLVLDEVDRMIEYGHYAELSDILER- 324
Query: 365 TMTETSQPRQTMIESGHFPELKNILDRVTMTETSQP-RQTFVFSATLTHSLKNSLNLKKG 423
PE +P RQT V+SATLT + + +KK
Sbjct: 325 -----------------LPE--------------RPLRQTLVYSATLTINKNKKVEMKK- 352
Query: 424 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 483
S KK+S ++ L K K+++L EK +TL E++I C D+K S LY F
Sbjct: 353 -SVKKKLSNEKTFDALIEKLKLDKKVKVINLIEKDITVETLVEARINCMVDDKLSCLYLF 411
Query: 484 ILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 543
L PG+TL + IK K+VD+ + +L+
Sbjct: 412 CLLFPGKTLVFA-NSVSCIK--KVVDI---------------------------FRLLEQ 441
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
P PLHA M QRQRLKNLDRF+ + IL TDV
Sbjct: 442 PA--------------------------YPLHAKMQQRQRLKNLDRFKSSPSGILFCTDV 475
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659
AARG+DI I++VIH+ +P+ +E+Y+HR GRTARA +E + E PL F
Sbjct: 476 AARGIDIKDIKYVIHFELPKAAELYVHRCGRTARAASEDIP-------EFPLDRSF 524
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA+QV++H+ A KYT +K+ +VGG+S KQ R+LN P I++ATPG +
Sbjct: 223 ALVLTPTRELALQVRDHLRSAAKYTDLKIEAIVGGISQHKQQRLLNYQPEIIIATPGRM 281
>gi|390598971|gb|EIN08368.1| DEAD-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 754
Score = 350 bits (897), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 205/566 (36%), Positives = 304/566 (53%), Gaps = 105/566 (18%)
Query: 747 SANKELLEVDTSNNEDMFVQ---MAEWVKF--NIPETIIRALYQKGFKTPTKIQSMVMPS 801
SA+ L E D F + W K+ ++ ++RAL+ +GF +PT IQ+ V+P
Sbjct: 103 SASPRLSEARAEEEGDDFDSEKLLPAWHKYKDHVHPKLLRALHAQGFNSPTPIQAQVIPE 162
Query: 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861
A R D+VG AETGSGKTLA+G+P+LT ++ +
Sbjct: 163 AGTGR-DVVGIAETGSGKTLAYGLPVLTDLLTR--------------------------- 194
Query: 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI---------------LDAGKYTP-- 904
+ K+R + ALILAPTRELA+QV H+ D K T
Sbjct: 195 -----SRPKPKSRRAVQALILAPTRELALQVTQHLNACLNNLYDTPEGEGHDGSKTTNGK 249
Query: 905 ---------------VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
V +A V+GGMS +KQ R+L++ +LVATPGRLW+ +Q
Sbjct: 250 GKAKVTTEQKKGPPIVSIAAVIGGMSAQKQRRVLDRGVDVLVATPGRLWDVLQEDDALAN 309
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR------------------- 990
+L + +LV+DE DRM+E+GH+ EL NIL R+T +
Sbjct: 310 QLRHLRFLVLDEADRMVEAGHYAELDNIL-RLTFRGSGDADTSPEFTGEQAVAAEVEAEE 368
Query: 991 ----------QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--- 1037
QTFVFSAT++ L+ +L ++ K K + L
Sbjct: 369 QDARSQHDGLQTFVFSATMSKDLQRNLKQRRKSKKPFKPKTKPQTTLDDLLLRLDFRDPE 428
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 1097
PKIVDL+ + GI TL +SK+ C +KD YLYYF+L++PGR+LVF ++I ++RL LL
Sbjct: 429 PKIVDLSPEGGIVSTLKQSKVECLSADKDVYLYYFLLRYPGRSLVFLSAIDGIRRLMPLL 488
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
+L PLH+ + QRQRLKNLDRF+ NS+LLATD+AARGLDIP ++HVIHY +PR+
Sbjct: 489 DLLGVKAFPLHSQLEQRQRLKNLDRFKSTANSVLLATDIAARGLDIPSVDHVIHYQIPRS 548
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIK 1216
+++Y+HR+GRTARA +G +L++ DE + + S+ ++ D +P+ ++ +L +K
Sbjct: 549 ADVYVHRNGRTARAMRDGFSLLMCAPDERKVVRALLGSVGREEDEIPEIAVELHILYKLK 608
Query: 1217 KRIDLAKSIEYLESKIKK-NRPDNWL 1241
+R+ LAK I+ + K++K N W+
Sbjct: 609 ERVQLAKQIDSQQHKVRKVNHEKKWM 634
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 135/405 (33%), Positives = 197/405 (48%), Gaps = 75/405 (18%)
Query: 130 SANKELLEVDTSNNEDMFVQ---MAEWVKF--NIPETIIRALYQKGFKTPTKIQSMVMPS 184
SA+ L E D F + W K+ ++ ++RAL+ +GF +PT IQ+ V+P
Sbjct: 103 SASPRLSEARAEEEGDDFDSEKLLPAWHKYKDHVHPKLLRALHAQGFNSPTPIQAQVIPE 162
Query: 185 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 244
A R D+VG AETGSGKTLA+G+P+LT ++ +
Sbjct: 163 AGTGR-DVVGIAETGSGKTLAYGLPVLTDLLTR--------------------------- 194
Query: 245 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI---------------LDAGKYTP-- 287
+ K+R + ALILAPTRELA+QV H+ D K T
Sbjct: 195 -----SRPKPKSRRAVQALILAPTRELALQVTQHLNACLNNLYDTPEGEGHDGSKTTNGK 249
Query: 288 ---------------VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
V +A V+GGMS +KQ R+L++ +LVATPGRLW+ +Q
Sbjct: 250 GKAKVTTEQKKGPPIVSIAAVIGGMSAQKQRRVLDRGVDVLVATPGRLWDVLQEDDALAN 309
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L + +LV+DE DRM+E+GH+ EL NIL R+T + + +G +
Sbjct: 310 QLRHLRFLVLDEADRMVEAGHYAELDNIL-RLTFRGSGDADTSPEFTGEQAVAAEVEAEE 368
Query: 393 TMTETSQPR-QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--- 448
+ QTFVFSAT++ L+ +L ++ K K + L
Sbjct: 369 QDARSQHDGLQTFVFSATMSKDLQRNLKQRRKSKKPFKPKTKPQTTLDDLLLRLDFRDPE 428
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
PKIVDL+ + GI TL +SK+ C +KD YLYYF+L++PGR+L
Sbjct: 429 PKIVDLSPEGGIVSTLKQSKVECLSADKDVYLYYFLLRYPGRSLV 473
Score = 193 bits (491), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 114/148 (77%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PKIVDL+ + GI TL +SK+ C +KD YLYYF+L++PGR+LVF ++I ++RL LL
Sbjct: 429 PKIVDLSPEGGIVSTLKQSKVECLSADKDVYLYYFLLRYPGRSLVFLSAIDGIRRLMPLL 488
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PLH+ + QRQRLKNLDRF+ NS+LLATD+AARGLDIP ++HVIHY +PR+
Sbjct: 489 DLLGVKAFPLHSQLEQRQRLKNLDRFKSTANSVLLATDIAARGLDIPSVDHVIHYQIPRS 548
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDE 652
+++Y+HR+GRTARA +G ++++ DE
Sbjct: 549 ADVYVHRNGRTARAMRDGFSLLMCAPDE 576
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 32/96 (33%)
Query: 1351 RYSWDALILAPTRELAIQVQNHI---------------LDAGKYTP-------------- 1381
R + ALILAPTRELA+QV H+ D K T
Sbjct: 202 RRAVQALILAPTRELALQVTQHLNACLNNLYDTPEGEGHDGSKTTNGKGKAKVTTEQKKG 261
Query: 1382 ---VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
V +A V+GGMS +KQ R+L++ +LVATPG L
Sbjct: 262 PPIVSIAAVIGGMSAQKQRRVLDRGVDVLVATPGRL 297
>gi|32564046|ref|NP_871838.1| Protein F55F8.2, isoform b [Caenorhabditis elegans]
gi|351063670|emb|CCD71884.1| Protein F55F8.2, isoform b [Caenorhabditis elegans]
Length = 579
Score = 350 bits (897), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 203/470 (43%), Positives = 289/470 (61%), Gaps = 40/470 (8%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
F PT+IQS V+P+A+ R+D++GAAETGSGKTLAFGIP++ ++ E +DS
Sbjct: 8 FSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLL--------ESSDDSQ 59
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 907
E E V+ R ALI+APTREL IQ+ HI T +
Sbjct: 60 ETESTE----------------VRGPR----ALIVAPTRELVIQIMKHINALISTTQLIA 99
Query: 908 ACVVGGMSTEKQLRILNKC-PHILVATPGRLWEFIQ---LGHFHLTELYKINYLVIDETD 963
+VGG++ KQ RI+++ P I+VATPGRLW +Q G F L E + LV+DETD
Sbjct: 100 TSIVGGLAQVKQERIISQQRPDIVVATPGRLWAMMQEAETGEF-LAEWKDLKCLVVDETD 158
Query: 964 RMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD 1023
RM+E G+F EL +IL+++ + QT VFSATLT + + ++ + + K K
Sbjct: 159 RMVEEGYFAELTHILNKIHEESEKEKLQTLVFSATLTFA--KAQDVAEEEKKKAKELSSQ 216
Query: 1024 PSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQHPGRT 1080
I+RL L ++ K++DLT ++G L E++I C + EKD+ L Y + ++PGRT
Sbjct: 217 QKIQRLIKLTGLRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRT 276
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
+VF NSI + +RL +L + P+ LHA M Q+QRLKNL++F + N++LLATDVAARG
Sbjct: 277 IVFVNSIDAARRLYSVLKSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARG 336
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
LDI GI+HVIHY VP+ EIYIHRSGRTARA++ GLT+VL++ Y+K+ L +
Sbjct: 337 LDIQGIDHVIHYQVPKKVEIYIHRSGRTARASHRGLTVVLVDPPSRQFYMKLCKGLNRMQ 396
Query: 1201 DLPDFPID-ESVLSLIKKRIDLAKSIEYLESKIKKNR-PDNWLHRSGRTA 1248
DL FPID E +++ IKKR+ LA I+ L + KK + ++W ++ R A
Sbjct: 397 DLNVFPIDFEPLMNAIKKRVRLASEIDSLGFRCKKIKMSESWFEKAARAA 446
Score = 176 bits (447), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
Query: 506 KIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
K++DLT ++G L E++I C + EKD+ L Y + ++PGRT+VF NSI + +RL +L
Sbjct: 234 KVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAARRLYSVL 293
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+ P+ LHA M Q+QRLKNL++F + N++LLATDVAARGLDI GI+HVIHY VP+
Sbjct: 294 KSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPKK 353
Query: 625 SEIYIHRSGRTARANNEGLTVVLIE 649
EIYIHRSGRTARA++ GLTVVL++
Sbjct: 354 VEIYIHRSGRTARASHRGLTVVLVD 378
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 174/330 (52%), Gaps = 66/330 (20%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
F PT+IQS V+P+A+ R+D++GAAETGSGKTLAFGIP++ ++ E +DS
Sbjct: 8 FSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLL--------ESSDDSQ 59
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 290
E E V+ R ALI+APTREL IQ+ HI T +
Sbjct: 60 ETESTE----------------VRGPR----ALIVAPTRELVIQIMKHINALISTTQLIA 99
Query: 291 ACVVGGMSTEKQLRILNKC-PHILVATPGRLWEFIQ---LGHFHLTELYKINYLVIDETD 346
+VGG++ KQ RI+++ P I+VATPGRLW +Q G F L E + LV+DETD
Sbjct: 100 TSIVGGLAQVKQERIISQQRPDIVVATPGRLWAMMQEAETGEF-LAEWKDLKCLVVDETD 158
Query: 347 RMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406
RM+E G+F EL +IL+++ H K L QT VF
Sbjct: 159 RMVEEGYFAELTHILNKI----------------HEESEKEKL------------QTLVF 190
Query: 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTL 464
SATLT + + ++ + + K K I+RL L ++ K++DLT ++G L
Sbjct: 191 SATLTFA--KAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHKVIDLTRQMGTAGCL 248
Query: 465 TESKILCKH-DEKDSYLYYFILQHPGRTLC 493
E++I C + EKD+ L Y + ++PGRT+
Sbjct: 249 VEARINCGNLLEKDTSLVYLLTRYPGRTIV 278
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID-ESVLSLIKKRI 1298
++HRSGRTARA++ GLT+VL++ Y+K+ L + DL FPID E +++ IKKR+
Sbjct: 357 YIHRSGRTARASHRGLTVVLVDPPSRQFYMKLCKGLNRMQDLNVFPIDFEPLMNAIKKRV 416
Query: 1299 DLAKSIEYLESKIKKNR-PDNWLEKAAKDMDIIIDD 1333
LA I+ L + KK + ++W EKAA+ D+ D+
Sbjct: 417 RLASEIDSLGFRCKKIKMSESWFEKAARAADLDYDE 452
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGAL 1414
ALI+APTREL IQ+ HI T + +VGG++ KQ RI+++ P I+VATPG L
Sbjct: 71 ALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRL 130
>gi|443896134|dbj|GAC73478.1| RNA helicase [Pseudozyma antarctica T-34]
Length = 886
Score = 349 bits (896), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 207/560 (36%), Positives = 305/560 (54%), Gaps = 109/560 (19%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL-------------------LARK 807
+ W + + RAL KGF +PT+IQ+ +P AL ++
Sbjct: 226 LPAWSHLPLHAALKRALAHKGFHSPTEIQNRSIPLALGLQQDDSSDSDEPSTSSSAFKKR 285
Query: 808 DIVGAAETGSGKTLAFGIPILTGIVNKLEN----PTEEDENDSGLEEEAEEVLEELEEES 863
D+VG ++TGSGKTLA+G+PIL + + EN PT D
Sbjct: 286 DVVGVSQTGSGKTLAYGLPILNYLFHNAENVASAPTHGD--------------------- 324
Query: 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV--------------KVAC 909
L ALIL PTRELA+QV H+ D + + + ++A
Sbjct: 325 ---------VPPPLGALILCPTRELALQVSAHLTDVIRSSCLVDDTLSYAKLVRRPQIAV 375
Query: 910 VVGGMSTEKQLRILNKCPH-----ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
V GGMS KQ R+L I+VATPGRLWE +L + ++ +LV+DE DR
Sbjct: 376 VCGGMSEHKQRRLLQGRSRRAGVDIIVATPGRLWEMTRLDDELAARIKQVRFLVLDEADR 435
Query: 965 MIESGHFPELKNILDRVTMTETSQPR-----------------------------QTFVF 995
M++ GHF E+++IL+ V E +P+ QTFVF
Sbjct: 436 MVQVGHFAEMEHILNLVHRAEAQRPKEGQDGQQSDSDGESGAVVVGEGVRPNAAMQTFVF 495
Query: 996 SATLTHSLKNSLNLKK--GQSKSKKVSK--GDPSIKRLQDLLNIKS-PKIVDLTEKIGIT 1050
SATL+ +L+ +L ++ Q K+ SK +++ L + ++ +S P IVDLT G+
Sbjct: 496 SATLSKALQTNLKRRRKLPQFTKKRHSKRSAGSTLEELLERIDFRSSPAIVDLTPAQGLP 555
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
L E+K+ C +KD+YLYYF+L++PGR+LVF NSI ++RL+ +L L P+H+
Sbjct: 556 SGLMETKLECVSKDKDAYLYYFLLRYPGRSLVFVNSIDGIRRLSPILAQLGLVCYPIHSQ 615
Query: 1111 MNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 1169
+ Q+QRLKNLDRFR +N ILLATDVAARGLDIP ++HV+HY +PR+++ YIHRSGRTA
Sbjct: 616 LQQKQRLKNLDRFRSAASNCILLATDVAARGLDIPSVDHVVHYQLPRSADTYIHRSGRTA 675
Query: 1170 RANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIE-YL 1228
RA G++L LIE E L+ ++ +L + D P FPI S L+L+++R++LA +I+ +
Sbjct: 676 RAGTSGVSLALIEPREKMLWSQLSRALSRP-DPPSFPITFSTLALLRERVELAIAIDKQM 734
Query: 1229 ESKIKKNRPDNWLHRSGRTA 1248
+ K+ D+WL + R A
Sbjct: 735 HAATKQAHDDSWLAQLARDA 754
Score = 313 bits (802), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 193/549 (35%), Positives = 280/549 (51%), Gaps = 129/549 (23%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL-------------------LARK 190
+ W + + RAL KGF +PT+IQ+ +P AL ++
Sbjct: 226 LPAWSHLPLHAALKRALAHKGFHSPTEIQNRSIPLALGLQQDDSSDSDEPSTSSSAFKKR 285
Query: 191 DIVGAAETGSGKTLAFGIPILTGIVNKLEN----PTEEDENDSGLEEEAEEVLEELEEES 246
D+VG ++TGSGKTLA+G+PIL + + EN PT D
Sbjct: 286 DVVGVSQTGSGKTLAYGLPILNYLFHNAENVASAPTHGD--------------------- 324
Query: 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV--------------KVAC 292
L ALIL PTRELA+QV H+ D + + + ++A
Sbjct: 325 ---------VPPPLGALILCPTRELALQVSAHLTDVIRSSCLVDDTLSYAKLVRRPQIAV 375
Query: 293 VVGGMSTEKQLRILNKCPH-----ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
V GGMS KQ R+L I+VATPGRLWE +L + ++ +LV+DE DR
Sbjct: 376 VCGGMSEHKQRRLLQGRSRRAGVDIIVATPGRLWEMTRLDDELAARIKQVRFLVLDEADR 435
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPR---QTF 404
M++ GHF E+++IL+ V E +P++ + G + V + E +P QTF
Sbjct: 436 MVQVGHFAEMEHILNLVHRAEAQRPKEG--QDGQQSDSDGESGAVVVGEGVRPNAAMQTF 493
Query: 405 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 464
VFSATL+ +L+ +L ++ K+ T+K
Sbjct: 494 VFSATLSKALQTNLKRRR---------------------------KLPQFTKK------- 519
Query: 465 TESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESK 524
+H ++ + G TL E ++ + SP IVDLT G+ L E+K
Sbjct: 520 -------RHSKRSA----------GSTLEELLERIDFRSSPAIVDLTPAQGLPSGLMETK 562
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
+ C +KD+YLYYF+L++PGR+LVF NSI ++RL+ +L L P+H+ + Q+QRL
Sbjct: 563 LECVSKDKDAYLYYFLLRYPGRSLVFVNSIDGIRRLSPILAQLGLVCYPIHSQLQQKQRL 622
Query: 585 KNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
KNLDRFR +N ILLATDVAARGLDIP ++HV+HY +PR+++ YIHRSGRTARA G+
Sbjct: 623 KNLDRFRSAASNCILLATDVAARGLDIPSVDHVVHYQLPRSADTYIHRSGRTARAGTSGV 682
Query: 644 TVVLIESDE 652
++ LIE E
Sbjct: 683 SLALIEPRE 691
Score = 81.3 bits (199), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 66/100 (66%), Gaps = 2/100 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA G++L LIE E L+ ++ +L + D P FPI S L+L+++R
Sbjct: 665 DTYIHRSGRTARAGTSGVSLALIEPREKMLWSQLSRALSRP-DPPSFPITFSTLALLRER 723
Query: 1298 IDLAKSIE-YLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
++LA +I+ + + K+ D+WL + A+D D+ + D++L
Sbjct: 724 VELAIAIDKQMHAATKQAHDDSWLAQLARDADLAVSDDDL 763
Score = 49.7 bits (117), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 25/101 (24%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPV--------------KVACVVGGMSTEKQLRILN 1401
ALIL PTRELA+QV H+ D + + + ++A V GGMS KQ R+L
Sbjct: 331 ALILCPTRELALQVSAHLTDVIRSSCLVDDTLSYAKLVRRPQIAVVCGGMSEHKQRRLLQ 390
Query: 1402 KCPH-----ILVATPGAL-SLKRIDLAKSIEYLESKIKKNR 1436
I+VATPG L + R+D + L ++IK+ R
Sbjct: 391 GRSRRAGVDIIVATPGRLWEMTRLD-----DELAARIKQVR 426
>gi|330797646|ref|XP_003286870.1| hypothetical protein DICPUDRAFT_150880 [Dictyostelium purpureum]
gi|325083172|gb|EGC36632.1| hypothetical protein DICPUDRAFT_150880 [Dictyostelium purpureum]
Length = 903
Score = 349 bits (896), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 214/540 (39%), Positives = 297/540 (55%), Gaps = 58/540 (10%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
S E + M+EW N+ II+ L GF+ PT+IQS V+P A+ DI+GAA+TGS
Sbjct: 238 STEEQNQLDMSEWTALNLDPLIIKGLRSLGFEKPTEIQSAVLPVAISNGYDIIGAAQTGS 297
Query: 201 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 260
GKTLAFGIP++ I+ L + E + ++ E + EEE + + KL
Sbjct: 298 GKTLAFGIPMVQRILQHLRKHGQSVEKEGETRDKQIEEEGDEEEEEEEESTGRSEEHRKL 357
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
Y+L++ PTRELAIQV NHI +T +KV +VGG++ ++Q RIL K P I+VATPGRL
Sbjct: 358 YSLVICPTRELAIQVTNHIKSIIAFTNLKVVSIVGGLAQQRQQRILTKRPEIVVATPGRL 417
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
WE I GH HL EL + L IDE DRM+E G
Sbjct: 418 WELITEGHKHLIELNSLLCLGIDEADRMVEQG---------------------------- 449
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV----SKGDPS 436
HF EL+NIL + TF + + LK +K ++K ++V SKG+
Sbjct: 450 HFAELENILKTLP---------TFKGAVSKKERLKKQQEQEK-RNKRRQVEKLNSKGEVI 499
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----------Q 486
KR + + ++ + E K L ++ S+++ L Q
Sbjct: 500 NKRNKKGDEEDQDDQEEEDDEEEEEEEQEEEKHLTTTHKRQSFVFSATLVNIPGDNQQNQ 559
Query: 487 HPGR-----TLCEEIQDLLNI-KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540
H + T E++ + + + K++D T K K L E+KI C +EKD YLYYF+
Sbjct: 560 HQKKKYRKPTPIEQLIERVRFQRDYKLIDCTMKRLTAKNLMETKIFCNLEEKDHYLYYFV 619
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
++PGRTLVF NSI +RL + +L+ LHA M Q+QRLKNLDRFR NN +L+A
Sbjct: 620 ERYPGRTLVFVNSIDCARRLIPIFNILEVPVFSLHAQMQQKQRLKNLDRFRTMNNVVLIA 679
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660
TDVAARGLDIPG++HVIHY VPRT++ YIHRSGRTAR+ +G++VVL+ E PL K +
Sbjct: 680 TDVAARGLDIPGVQHVIHYQVPRTTQTYIHRSGRTARSTQDGISVVLVTPKERPLYIKLD 739
Score = 249 bits (635), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/261 (48%), Positives = 175/261 (67%), Gaps = 6/261 (2%)
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 1045
T+ RQ+FVFSATL + ++ ++ Q + KK K P + ++ + + K++D T
Sbjct: 535 TTHKRQSFVFSATLVNIPGDN---QQNQHQKKKYRKPTPIEQLIERVRFQRDYKLIDCTM 591
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 1105
K K L E+KI C +EKD YLYYF+ ++PGRTLVF NSI +RL + +L+
Sbjct: 592 KRLTAKNLMETKIFCNLEEKDHYLYYFVERYPGRTLVFVNSIDCARRLIPIFNILEVPVF 651
Query: 1106 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
LHA M Q+QRLKNLDRFR NN +L+ATDVAARGLDIPG++HVIHY VPRT++ YIHRS
Sbjct: 652 SLHAQMQQKQRLKNLDRFRTMNNVVLIATDVAARGLDIPGVQHVIHYQVPRTTQTYIHRS 711
Query: 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
GRTAR+ +G+++VL+ E PLYIK+ ++LE D+ +FPID L I+ RI LA+ I
Sbjct: 712 GRTARSTQDGISVVLVTPKERPLYIKLDSALEH--DIGNFPIDLRYLEGIRDRISLAREI 769
Query: 1226 EYLESK-IKKNRPDNWLHRSG 1245
+ L K IK+NR +W ++
Sbjct: 770 DQLSYKSIKENREKSWYKKAA 790
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 138/221 (62%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
S E + M+EW N+ II+ L GF+ PT+IQS V+P A+ DI+GAA+TGS
Sbjct: 238 STEEQNQLDMSEWTALNLDPLIIKGLRSLGFEKPTEIQSAVLPVAISNGYDIIGAAQTGS 297
Query: 818 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 877
GKTLAFGIP++ I+ L + E + ++ E + EEE + + KL
Sbjct: 298 GKTLAFGIPMVQRILQHLRKHGQSVEKEGETRDKQIEEEGDEEEEEEEESTGRSEEHRKL 357
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
Y+L++ PTRELAIQV NHI +T +KV +VGG++ ++Q RIL K P I+VATPGRL
Sbjct: 358 YSLVICPTRELAIQVTNHIKSIIAFTNLKVVSIVGGLAQQRQQRILTKRPEIVVATPGRL 417
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 978
WE I GH HL EL + L IDE DRM+E GHF EL+NIL
Sbjct: 418 WELITEGHKHLIELNSLLCLGIDEADRMVEQGHFAELENIL 458
Score = 86.7 bits (213), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 65/91 (71%), Gaps = 3/91 (3%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTAR+ +G+++VL+ E PLYIK+ ++LE D+ +FPID L I+ RI
Sbjct: 707 YIHRSGRTARSTQDGISVVLVTPKERPLYIKLDSALEH--DIGNFPIDLRYLEGIRDRIS 764
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDI 1329
LA+ I+ L K IK+NR +W +KAA++MDI
Sbjct: 765 LAREIDQLSYKSIKENREKSWYKKAAEEMDI 795
Score = 70.9 bits (172), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+L++ PTRELAIQV NHI +T +KV +VGG++ ++Q RIL K P I+VATPG L
Sbjct: 359 SLVICPTRELAIQVTNHIKSIIAFTNLKVVSIVGGLAQQRQQRILTKRPEIVVATPGRL 417
>gi|393245470|gb|EJD52980.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 736
Score = 347 bits (890), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 202/522 (38%), Positives = 289/522 (55%), Gaps = 77/522 (14%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
Q+ EW FN+ + AL+ K F +PT IQS +P A+ R DI+G AETGSGKTLA+G+
Sbjct: 133 QLPEWAPFNLHAQLAAALHHKKFASPTSIQSQAIPKAVEGR-DIIGVAETGSGKTLAYGL 191
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
PIL ++ P K R + AL+LAPT
Sbjct: 192 PILHHLLTTPRPPKS-------------------------------KGRRPVRALVLAPT 220
Query: 886 RELAIQVQNHILDAGKYTPVK-------------------VACVVGGMSTEKQLRILNKC 926
RELA+QV H L A P+K VA +VGGMS +KQ R+L +
Sbjct: 221 RELALQVAAH-LKACLVDPIKKEEDTDDKPKGPAKPPAVSVAAIVGGMSAQKQRRVLERG 279
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD---RVTM 983
+LVATPGRLW+ + ++ ++ +LV+DE DRMI++GHF EL NIL RV M
Sbjct: 280 VDVLVATPGRLWDILSEDDALALQIKRLKFLVLDEADRMIQAGHFAELDNILKLTVRVDM 339
Query: 984 TE------------------TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 1025
E ++ QTFVFSATL+ L+ +L +K K K S
Sbjct: 340 PEEDAHDALEDFKKASSAEGKNEDVQTFVFSATLSKDLQRNLKKRKYLGKGNKTSTL--D 397
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 1085
L+ P+I+DL+ + G+ L ESKI C +KD+YLYYF+L++PGRTLVF +
Sbjct: 398 DLLLRLDFRDSDPEIIDLSPEGGVVAGLQESKIECLVTDKDAYLYYFLLRYPGRTLVFLS 457
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
SI ++RL LL +L+ LH+ + Q+QRLK LDRF+ + +LLATDVAARGLD+P
Sbjct: 458 SIDGLRRLAPLLELLQLKSFVLHSELQQKQRLKTLDRFKAEARCVLLATDVAARGLDVPH 517
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK-VDLPD 1204
++HVIHY +PR+++ Y+HR+GRTARA G L+L+ DE + SL +K D+P+
Sbjct: 518 VDHVIHYQLPRSADTYVHRNGRTARARAAGFALLLVAPDERRTLRALMASLGRKDTDIPE 577
Query: 1205 FPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHRSG 1245
++ ++ +K R+ LA+ I+ + ++KK N W+ +
Sbjct: 578 MGVEHDIVDKLKDRLALARKIDNAQHRVKKVNHERKWMREAA 619
Score = 216 bits (549), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/364 (37%), Positives = 189/364 (51%), Gaps = 61/364 (16%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
Q+ EW FN+ + AL+ K F +PT IQS +P A+ R DI+G AETGSGKTLA+G+
Sbjct: 133 QLPEWAPFNLHAQLAAALHHKKFASPTSIQSQAIPKAVEGR-DIIGVAETGSGKTLAYGL 191
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
PIL ++ P K R + AL+LAPT
Sbjct: 192 PILHHLLTTPRPPKS-------------------------------KGRRPVRALVLAPT 220
Query: 269 RELAIQVQNHILDAGKYTPVK-------------------VACVVGGMSTEKQLRILNKC 309
RELA+QV H L A P+K VA +VGGMS +KQ R+L +
Sbjct: 221 RELALQVAAH-LKACLVDPIKKEEDTDDKPKGPAKPPAVSVAAIVGGMSAQKQRRVLERG 279
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
+LVATPGRLW+ + ++ ++ +LV+DE DRMI++GHF EL NIL ++T+
Sbjct: 280 VDVLVATPGRLWDILSEDDALALQIKRLKFLVLDEADRMIQAGHFAELDNIL-KLTV--- 335
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 429
R M E L++ + ++ QTFVFSATL+ L+ +L +K K K
Sbjct: 336 ---RVDMPEEDAHDALEDFKKASSAEGKNEDVQTFVFSATLSKDLQRNLKKRKYLGKGNK 392
Query: 430 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489
S L+ P+I+DL+ + G+ L ESKI C +KD+YLYYF+L++PG
Sbjct: 393 TSTL--DDLLLRLDFRDSDPEIIDLSPEGGVVAGLQESKIECLVTDKDAYLYYFLLRYPG 450
Query: 490 RTLC 493
RTL
Sbjct: 451 RTLV 454
Score = 170 bits (431), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 110/148 (74%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
P+I+DL+ + G+ L ESKI C +KD+YLYYF+L++PGRTLVF +SI ++RL LL
Sbjct: 410 PEIIDLSPEGGVVAGLQESKIECLVTDKDAYLYYFLLRYPGRTLVFLSSIDGLRRLAPLL 469
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L+ LH+ + Q+QRLK LDRF+ + +LLATDVAARGLD+P ++HVIHY +PR+
Sbjct: 470 ELLQLKSFVLHSELQQKQRLKTLDRFKAEARCVLLATDVAARGLDVPHVDHVIHYQLPRS 529
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDE 652
++ Y+HR+GRTARA G ++L+ DE
Sbjct: 530 ADTYVHRNGRTARARAAGFALLLVAPDE 557
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK-VDLPDFPIDESVLSLIKK 1296
D ++HR+GRTARA G L+L+ DE + SL +K D+P+ ++ ++ +K
Sbjct: 531 DTYVHRNGRTARARAAGFALLLVAPDERRTLRALMASLGRKDTDIPEMGVEHDIVDKLKD 590
Query: 1297 RIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDE 1334
R+ LA+ I+ + ++KK N W+ +AA+ + + +D +
Sbjct: 591 RLALARKIDNAQHRVKKVNHERKWMREAAEALGVDVDSD 629
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 43/78 (55%), Gaps = 20/78 (25%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK-------------------VACVVGGMSTEKQ 1396
AL+LAPTRELA+QV H L A P+K VA +VGGMS +KQ
Sbjct: 214 ALVLAPTRELALQVAAH-LKACLVDPIKKEEDTDDKPKGPAKPPAVSVAAIVGGMSAQKQ 272
Query: 1397 LRILNKCPHILVATPGAL 1414
R+L + +LVATPG L
Sbjct: 273 RRVLERGVDVLVATPGRL 290
>gi|1335873|gb|AAB01091.1| ATP-dependent RNA helicase, partial [Mus musculus]
Length = 479
Score = 346 bits (888), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 181/366 (49%), Positives = 247/366 (67%), Gaps = 25/366 (6%)
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H H
Sbjct: 1 LAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPH 60
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKN 1005
L+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQT VFSATLT H
Sbjct: 61 LSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPSRQTLVFSATLTLVHQAPA 120
Query: 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 1065
+ KK KK+ K D +Q + PK++DLT + G +TLTE+KI C+ DEK
Sbjct: 121 RILHKK---HVKKMDKTDKLDLLMQKVGMRGKPKVIDLTRERGTVETLTETKIHCETDEK 177
Query: 1066 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
D YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F
Sbjct: 178 DLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLNLHACMHQKQRLRNLEQFAR 237
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI---- 1181
+ +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EGL+L+LI
Sbjct: 238 LQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIGPED 297
Query: 1182 ------------ESDEIPLYI----KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
+ ++IPL+ K++ +L+K D+P FP+ + ++K+RI LA+ I
Sbjct: 298 VINFKKIYKTLQKDEDIPLFPVHFKKIYKTLQKDEDIPLFPVQSKYMDVVKERIRLARQI 357
Query: 1226 EYLESK 1231
E E +
Sbjct: 358 EKAEYR 363
Score = 290 bits (741), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 164/385 (42%), Positives = 220/385 (57%), Gaps = 89/385 (23%)
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H H
Sbjct: 1 LAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPH 60
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L+ L ++ LVIDE DRM+E G HF EL +L+
Sbjct: 61 LSNLRQLRCLVIDEADRMVEKG----------------------------HFAELSQLLE 92
Query: 391 RVTMTETSQPRQTFVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 448
+ ++ + RQT VFSAT L H + KK KK+ K D
Sbjct: 93 MLNDSQYNPSRQTLVFSATLTLVHQAPARILHKK---HVKKMDKTD-------------- 135
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508
K+ L +K+G+ PK++
Sbjct: 136 -KLDLLMQKVGMRG-----------------------------------------KPKVI 153
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 568
DLT + G +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L
Sbjct: 154 DLTRERGTVETLTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLD 213
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY
Sbjct: 214 VMPLNLHACMHQKQRLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIY 273
Query: 629 IHRSGRTARANNEGLTVVLIESDEI 653
IHRSGRTARA +EGL+++LI +++
Sbjct: 274 IHRSGRTARAASEGLSLMLIGPEDV 298
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 1240 WLHRSGRTARANNEGLTLVLI----------------ESDEIPLYI----KMFNSLEKKV 1279
++HRSGRTARA +EGL+L+LI + ++IPL+ K++ +L+K
Sbjct: 273 YIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKDEDIPLFPVHFKKIYKTLQKDE 332
Query: 1280 DLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLEK 1322
D+P FP+ + ++K+RI LA+ IE E + + ++W+E+
Sbjct: 333 DIPLFPVQSKYMDVVKERIRLARQIEKAEYRNFQACLHNSWIEQ 376
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 1365 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 1 LAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 50
>gi|392589213|gb|EIW78544.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 740
Score = 346 bits (887), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 206/561 (36%), Positives = 312/561 (55%), Gaps = 117/561 (20%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ W F + +++ L+ K FK+PT IQS +P A+ A KDIVG AETGSGKTLA+G+P
Sbjct: 132 LPSWRPFKLHPHLLQVLHSKNFKSPTPIQSNSLPKAI-AGKDIVGVAETGSGKTLAYGLP 190
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL I L +P +SG ++ +L AL++ PTR
Sbjct: 191 ILQHI---LTSPRPVLSTESG------------------------SSKRQLRALVITPTR 223
Query: 887 ELAIQVQNHIL-------------------------------------DAGKYTP-VKVA 908
ELA+QV +H+ +AG P V +A
Sbjct: 224 ELALQVADHLNIFARAIADAAVKREEGDEPDLSAPSKKKKSNGKPSDNEAGSGPPLVSIA 283
Query: 909 CVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES 968
+VGGMS +KQ R+L++ +++ATPGRLW+ + ++ +++LV+DE DRMIE+
Sbjct: 284 AIVGGMSAQKQRRLLDRGIEVMIATPGRLWDVLAEDEDLARQVSALDFLVLDEADRMIET 343
Query: 969 GHFPELKNILDRVTMTETSQPR-------------------------------------- 990
GHF EL NIL R+T+ ++ + +
Sbjct: 344 GHFAELDNIL-RLTIRQSEEDQIEPEHEGGSSGDEGDNDQSGNAGTVAGATPSIAGTNQE 402
Query: 991 ---QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL---LNIKSPK--IVD 1042
+T+VFSATL+ L+ +L K+ + K K +K P+ L DL L+ + P+ I+D
Sbjct: 403 NGMRTYVFSATLSKDLQQNLK-KRRRPKVGKKAKQKPA-STLDDLVLRLDFRDPEPEIID 460
Query: 1043 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 1102
L+ + G+ +L ESKI C +KD YLYYF+L++PGRTLVF +SI ++RL L+ +L
Sbjct: 461 LSPQGGVVSSLKESKIECLVTDKDVYLYYFLLRYPGRTLVFLSSIDGIRRLAPLMELLGL 520
Query: 1103 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162
PLH+ + QRQRLKNLDRF+ N++LLATD+AARGLDIP ++HVIHY +PRT+++++
Sbjct: 521 PAYPLHSQLEQRQRLKNLDRFKQTPNAVLLATDIAARGLDIPSVDHVIHYQIPRTADVFV 580
Query: 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKKRIDL 1221
HRSGRTARA EG +L++I DE +F SL++ D + + ++ ++L +K+RI +
Sbjct: 581 HRSGRTARAMREGFSLLMIAPDERRTVKLLFRSLDRNEDEVLEMSVELALLDKLKERIRV 640
Query: 1222 AKSIEYLESKIKKNRPDN-WL 1241
A+ I+ + K+KK D W+
Sbjct: 641 ARQIDAQQHKVKKENHDRKWM 661
Score = 318 bits (814), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 193/555 (34%), Positives = 284/555 (51%), Gaps = 135/555 (24%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ W F + +++ L+ K FK+PT IQS +P A+ A KDIVG AETGSGKTLA+G+P
Sbjct: 132 LPSWRPFKLHPHLLQVLHSKNFKSPTPIQSNSLPKAI-AGKDIVGVAETGSGKTLAYGLP 190
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL I L +P +SG ++ +L AL++ PTR
Sbjct: 191 ILQHI---LTSPRPVLSTESG------------------------SSKRQLRALVITPTR 223
Query: 270 ELAIQVQNHIL-------------------------------------DAGKYTP-VKVA 291
ELA+QV +H+ +AG P V +A
Sbjct: 224 ELALQVADHLNIFARAIADAAVKREEGDEPDLSAPSKKKKSNGKPSDNEAGSGPPLVSIA 283
Query: 292 CVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES 351
+VGGMS +KQ R+L++ +++ATPGRLW+ + ++ +++LV+DE DRMIE+
Sbjct: 284 AIVGGMSAQKQRRLLDRGIEVMIATPGRLWDVLAEDEDLARQVSALDFLVLDEADRMIET 343
Query: 352 GHFPELKNILDRVTMTET-------------SQPRQTMIESGHFPELKNILDRVTMTETS 398
GHF EL NIL R+T+ ++ S +SG+ + + T
Sbjct: 344 GHFAELDNIL-RLTIRQSEEDQIEPEHEGGSSGDEGDNDQSGNAGTVAGATPSIAGTNQE 402
Query: 399 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458
+T+VFSATL+ L+ Q+L + PK+ +
Sbjct: 403 NGMRTYVFSATLSKDLQ-------------------------QNLKKRRRPKVGKKAK-- 435
Query: 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL-LNIKSPKIVDLTEKIGIT 517
Q P TL + + L P+I+DL+ + G+
Sbjct: 436 ---------------------------QKPASTLDDLVLRLDFRDPEPEIIDLSPQGGVV 468
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+L ESKI C +KD YLYYF+L++PGRTLVF +SI ++RL L+ +L PLH+
Sbjct: 469 SSLKESKIECLVTDKDVYLYYFLLRYPGRTLVFLSSIDGIRRLAPLMELLGLPAYPLHSQ 528
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+ QRQRLKNLDRF+ N++LLATD+AARGLDIP ++HVIHY +PRT+++++HRSGRTAR
Sbjct: 529 LEQRQRLKNLDRFKQTPNAVLLATDIAARGLDIPSVDHVIHYQIPRTADVFVHRSGRTAR 588
Query: 638 ANNEGLTVVLIESDE 652
A EG ++++I DE
Sbjct: 589 AMREGFSLLMIAPDE 603
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKK 1296
D ++HRSGRTARA EG +L++I DE +F SL++ D + + ++ ++L +K+
Sbjct: 577 DVFVHRSGRTARAMREGFSLLMIAPDERRTVKLLFRSLDRNEDEVLEMSVELALLDKLKE 636
Query: 1297 RIDLAKSIEYLESKIKKNRPDN-WLEKAAKDMDIIIDDE 1334
RI +A+ I+ + K+KK D W+++AA M+I +D +
Sbjct: 637 RIRVARQIDAQQHKVKKENHDRKWMKEAADAMEIELDSD 675
Score = 53.5 bits (127), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 38/117 (32%)
Query: 1336 LIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHIL--------------------- 1374
L P +L ES + + AL++ PTRELA+QV +H+
Sbjct: 196 LTSPRPVLSTESGSSKRQLRALVITPTRELALQVADHLNIFARAIADAAVKREEGDEPDL 255
Query: 1375 ----------------DAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+AG P V +A +VGGMS +KQ R+L++ +++ATPG L
Sbjct: 256 SAPSKKKKSNGKPSDNEAGSGPPLVSIAAIVGGMSAQKQRRLLDRGIEVMIATPGRL 312
>gi|403416563|emb|CCM03263.1| predicted protein [Fibroporia radiculosa]
Length = 669
Score = 343 bits (881), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 216/578 (37%), Positives = 312/578 (53%), Gaps = 126/578 (21%)
Query: 748 ANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK 807
A +E L V + E + + W F++ + RALY + F +PT IQ+ +P LARK
Sbjct: 112 AQEEELPVSAFDYEAL---LPRWSPFSLHPQLGRALYAQHFSSPTPIQAEALP---LARK 165
Query: 808 --DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
DIVG AETGSGKTLA+G+PIL ++ A+
Sbjct: 166 GRDIVGVAETGSGKTLAYGLPILHHLL-------------------------------AH 194
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHI---LDAG---------------------- 900
+ KTR + ALIL PTRELA+QV +H+ L++G
Sbjct: 195 ASPAESKTRRSVRALILTPTRELALQVSSHLNACLNSGDIGEDPAPESKSSQGSSTRKNA 254
Query: 901 -------------------KYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEF 940
K P V VA +VGGMS +KQ RIL++ +LVATPGRLW+
Sbjct: 255 KGKGKEKVTSGAQLLSGRSKDPPLVSVAAIVGGMSAQKQRRILSRGIDVLVATPGRLWDI 314
Query: 941 IQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR---------- 990
IQ T++ + +LV+DE DRMIE+GHF E+++IL R+T+ + +
Sbjct: 315 IQEDDELATQIEHLRFLVLDEADRMIETGHFAEMESIL-RLTLRQRKEDEIESELDLGLG 373
Query: 991 --------------------QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030
QTFVFSATL+ L+ +L K+G+++ K KG L
Sbjct: 374 GAEAEFDVGESKDGVKEGEMQTFVFSATLSKDLQRNLK-KRGRARPWK--KGGKPASTLD 430
Query: 1031 DLL-----NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 1085
DLL SP ++D++ + G+ TL ESKI C +KD+YLYYF+L++PGRTLVF +
Sbjct: 431 DLLMRLDFRDASPAVIDISPEGGVVATLQESKIECLVTDKDAYLYYFLLRYPGRTLVFLS 490
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
SI ++RL L+ +L+ S PLH+ + QRQRLKNLDR + ++LLATDVAARGLD+P
Sbjct: 491 SIDGIRRLLPLMELLQISAFPLHSQLEQRQRLKNLDR-HSSSRAVLLATDVAARGLDVPA 549
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPD 1204
++HV+HY VPRT++ Y+HR+GRTARA G +L++ DE L + SL ++ D +P+
Sbjct: 550 VDHVVHYQVPRTADTYVHRNGRTARAARRGFSLLMCAPDERRLVKALMKSLGRQEDEIPE 609
Query: 1205 FPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWL 1241
++ +L +K R+ A+ I+ + K+ NWL
Sbjct: 610 MSVELYLLDKLKVRVQHARQIDATQHKVKKEKHEKNWL 647
Score = 319 bits (818), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 209/574 (36%), Positives = 297/574 (51%), Gaps = 148/574 (25%)
Query: 131 ANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK 190
A +E L V + E + + W F++ + RALY + F +PT IQ+ +P LARK
Sbjct: 112 AQEEELPVSAFDYEAL---LPRWSPFSLHPQLGRALYAQHFSSPTPIQAEALP---LARK 165
Query: 191 --DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
DIVG AETGSGKTLA+G+PIL ++ A+
Sbjct: 166 GRDIVGVAETGSGKTLAYGLPILHHLL-------------------------------AH 194
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHI---LDAG---------------------- 283
+ KTR + ALIL PTRELA+QV +H+ L++G
Sbjct: 195 ASPAESKTRRSVRALILTPTRELALQVSSHLNACLNSGDIGEDPAPESKSSQGSSTRKNA 254
Query: 284 -------------------KYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEF 323
K P V VA +VGGMS +KQ RIL++ +LVATPGRLW+
Sbjct: 255 KGKGKEKVTSGAQLLSGRSKDPPLVSVAAIVGGMSAQKQRRILSRGIDVLVATPGRLWDI 314
Query: 324 IQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
IQ T++ + +LV+DE DRMIE+GHF E+++IL R+T+ Q ++ IES
Sbjct: 315 IQEDDELATQIEHLRFLVLDEADRMIETGHFAEMESIL-RLTL---RQRKEDEIESELDL 370
Query: 384 ELKNILDRVTMTETSQP-----RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
L + E+ QTFVFSATL+ L+ +L K+G+++ K KG
Sbjct: 371 GLGGAEAEFDVGESKDGVKEGEMQTFVFSATLSKDLQRNLK-KRGRARPWK--KGGKPAS 427
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
L DLL + D +D+
Sbjct: 428 TLDDLL--------------------------MRLDFRDA-------------------- 441
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
SP ++D++ + G+ TL ESKI C +KD+YLYYF+L++PGRTLVF +SI ++
Sbjct: 442 -----SPAVIDISPEGGVVATLQESKIECLVTDKDAYLYYFLLRYPGRTLVFLSSIDGIR 496
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
RL L+ +L+ S PLH+ + QRQRLKNLDR + ++LLATDVAARGLD+P ++HV+H
Sbjct: 497 RLLPLMELLQISAFPLHSQLEQRQRLKNLDR-HSSSRAVLLATDVAARGLDVPAVDHVVH 555
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
Y VPRT++ Y+HR+GRTARA G ++++ DE
Sbjct: 556 YQVPRTADTYVHRNGRTARAARRGFSLLMCAPDE 589
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKK 1296
D ++HR+GRTARA G +L++ DE L + SL ++ D +P+ ++ +L +K
Sbjct: 563 DTYVHRNGRTARAARRGFSLLMCAPDERRLVKALMKSLGRQEDEIPEMSVELYLLDKLKV 622
Query: 1297 RIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDE 1334
R+ A+ I+ + K+ NWL++ A+ M+I +D +
Sbjct: 623 RVQHARQIDATQHKVKKEKHEKNWLKETAEAMEIELDSD 661
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 49/109 (44%), Gaps = 45/109 (41%)
Query: 1351 RYSWDALILAPTRELAIQVQNHI---LDAG------------------------------ 1377
R S ALIL PTRELA+QV +H+ L++G
Sbjct: 203 RRSVRALILTPTRELALQVSSHLNACLNSGDIGEDPAPESKSSQGSSTRKNAKGKGKEKV 262
Query: 1378 -----------KYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
K P V VA +VGGMS +KQ RIL++ +LVATPG L
Sbjct: 263 TSGAQLLSGRSKDPPLVSVAAIVGGMSAQKQRRILSRGIDVLVATPGRL 311
>gi|349605099|gb|AEQ00450.1| ATP-dependent RNA helicase DDX24-like protein, partial [Equus
caballus]
Length = 443
Score = 341 bits (875), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 169/330 (51%), Positives = 235/330 (71%), Gaps = 7/330 (2%)
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+K A +VGGMST+KQ R+LN+ P I+VATPGRLWE ++ H HL+ L ++ LV+DE DR
Sbjct: 1 IKTAILVGGMSTQKQQRMLNRQPEIVVATPGRLWELVKEKHPHLSNLRQLRCLVVDEADR 60
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG 1022
M+E GHF EL +L+ ++ ++ + RQT VFSATLT H + KK K K +K
Sbjct: 61 MVEKGHFAELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPTRILHKKHTKKIDKTAKL 120
Query: 1023 DPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 1081
D ++++ ++ PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGRTL
Sbjct: 121 DLLMQKI----GLRGKPKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTL 176
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGL
Sbjct: 177 VFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGL 236
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
DIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K D
Sbjct: 237 DIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDED 296
Query: 1202 LPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+P FP+ + +K+RI LA+ IE E +
Sbjct: 297 IPLFPVQTKYMDAVKERIHLARQIEKAEYR 326
Score = 281 bits (720), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/368 (42%), Positives = 208/368 (56%), Gaps = 89/368 (24%)
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+K A +VGGMST+KQ R+LN+ P I+VATPGRLWE ++ H HL+ L ++ LV+DE DR
Sbjct: 1 IKTAILVGGMSTQKQQRMLNRQPEIVVATPGRLWELVKEKHPHLSNLRQLRCLVVDEADR 60
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
M+E G HF EL +L+ ++ ++ + RQT VFS
Sbjct: 61 MVEKG----------------------------HFAELSQLLEMLSDSQYNPKRQTLVFS 92
Query: 408 ATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
ATLT H + KK K K +K D L +KIG+
Sbjct: 93 ATLTLVHQAPTRILHKKHTKKIDKTAKLDL------------------LMQKIGLRG--- 131
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI 525
PK++DLT +TLTE+KI
Sbjct: 132 --------------------------------------KPKVIDLTRNEATVETLTETKI 153
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+
Sbjct: 154 HCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLR 213
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL++
Sbjct: 214 NLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSL 273
Query: 646 VLIESDEI 653
+LI +++
Sbjct: 274 MLIGPEDV 281
Score = 70.9 bits (172), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 256 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIH 315
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 316 LARQIEKAEYRNFQACLHNSWIEQ 339
Score = 48.1 bits (113), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 1382 VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 1 IKTAILVGGMSTQKQQRMLNRQPEIVVATPGRL 33
>gi|431839233|gb|ELK01160.1| ATP-dependent RNA helicase DDX24 [Pteropus alecto]
Length = 822
Score = 340 bits (872), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 206/527 (39%), Positives = 293/527 (55%), Gaps = 62/527 (11%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 183 DQKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 242
Query: 822 AFGIPIL-----------TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870
AF IP++ T ++ + P E + G E A +E E+ +
Sbjct: 243 AFAIPMIHLVLQCQVKKPTPALSNIGAPPGETRAEVGAETGALSDESRIEGEALPSEAGT 302
Query: 871 KKTR--NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV------------------ 910
K T +K A A + A+ + G + ++ V
Sbjct: 303 KATAPPSKARAKTGAAISDQALPFCDDDAGEGPSSLIREKAVPKKDEDKEEMFEEEQTGK 362
Query: 911 ----VGGMSTEKQLRILNKCPHI-LVATPGR-------------------LWEFIQLGHF 946
+GG S + K P + LV TP R LWE ++ H
Sbjct: 363 LKHELGGQSATSKTH--PKRPLLGLVLTPTRELAVQVRQHVDAVARFTXRLWELVKEKHP 420
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLK 1004
HL+ L ++ LV+DE DRM+E GHF EL +L+ ++ ++ + RQTFVFSATLT H
Sbjct: 421 HLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLSDSQYNPKRQTFVFSATLTLVHQAP 480
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
+ KK K K +K D +Q + PK++DLT +TLTE+KI C+ DE
Sbjct: 481 ARILHKKHTKKIDKTAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDE 537
Query: 1065 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
KD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F
Sbjct: 538 KDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFA 597
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+ +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +
Sbjct: 598 RLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPE 657
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ + K++ +L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 658 DVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIHLARQIEKAEYR 704
Score = 253 bits (646), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 155/415 (37%), Positives = 212/415 (51%), Gaps = 123/415 (29%)
Query: 241 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE 300
EL +SA + K+ L L+L PTRELA+QV+ H+ ++T
Sbjct: 366 ELGGQSATSKTHPKRP---LLGLVLTPTRELAVQVRQHVDAVARFT-------------- 408
Query: 301 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 360
RLWE ++ H HL+ L ++ LV+DE DRM+E G
Sbjct: 409 -----------------XRLWELVKEKHPHLSNLRQLRCLVVDEADRMVEKG-------- 443
Query: 361 LDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT--LTHSLKNSL 418
HF EL +L+ ++ ++ + RQTFVFSAT L H +
Sbjct: 444 --------------------HFAELSQLLEMLSDSQYNPKRQTFVFSATLTLVHQAPARI 483
Query: 419 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 478
KK +KK+ K + K+ L +KIG+
Sbjct: 484 LHKK---HTKKIDK---------------TAKLDLLMQKIGMRG---------------- 509
Query: 479 YLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 538
PK++DLT +TLTE+KI C+ DEKD YLYY
Sbjct: 510 -------------------------KPKVIDLTRNEATVETLTETKIHCETDEKDLYLYY 544
Query: 539 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598
F++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +L
Sbjct: 545 FLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVL 604
Query: 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 605 LATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDV 659
Score = 153 bits (386), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 182/405 (44%), Gaps = 90/405 (22%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 183 DQKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 242
Query: 205 AFGIPIL-----------TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 253
AF IP++ T ++ + P E + G E A +E E+ +
Sbjct: 243 AFAIPMIHLVLQCQVKKPTPALSNIGAPPGETRAEVGAETGALSDESRIEGEALPSEAGT 302
Query: 254 KKTR--NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV------------------ 293
K T +K A A + A+ + G + ++ V
Sbjct: 303 KATAPPSKARAKTGAAISDQALPFCDDDAGEGPSSLIREKAVPKKDEDKEEMFEEEQTGK 362
Query: 294 ----VGGMSTEKQLRILNKCPHI-LVATPGR-------------------LWEFIQLGHF 329
+GG S + K P + LV TP R LWE ++ H
Sbjct: 363 LKHELGGQSATSKTH--PKRPLLGLVLTPTRELAVQVRQHVDAVARFTXRLWELVKEKHP 420
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
HL+ L ++ LV+DE DRM+E GHF EL +L+ ++ +S + P+
Sbjct: 421 HLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLS------------DSQYNPK----- 463
Query: 390 DRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
RQTFVFSATLT H + KK K K +K D +Q +
Sbjct: 464 -----------RQTFVFSATLTLVHQAPARILHKKHTKKIDKTAKLD---LLMQKIGMRG 509
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGRTL
Sbjct: 510 KPKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTL 554
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 634 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIH 693
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDD 1333
LA+ IE E + + ++W+E+AA ++I +D+
Sbjct: 694 LARQIEKAEYRNFQACLHNSWIEQAAAALEIELDE 728
>gi|402225555|gb|EJU05616.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 752
Score = 340 bits (871), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 213/561 (37%), Positives = 308/561 (54%), Gaps = 88/561 (15%)
Query: 732 SKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTP 791
S K Q K + +A +L V+ S +E + + EW F + I R+L+ GF P
Sbjct: 130 SHKTAQPSKPRSVQPAA--PILGVEQSFDEYL---IPEWQLFPLKNQIKRSLHGLGFTKP 184
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851
T+IQS +P AL R DI+G AETGSGKTLA+G+PI+ ++ K
Sbjct: 185 TEIQSRSIPIALQGR-DIIGVAETGSGKTLAYGLPIINQLLVKYAG-------------- 229
Query: 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDA------------ 899
+ + L ALILAPTRELA+QV H+
Sbjct: 230 -----------------VIPPEQRTLSALILAPTRELALQVGEHLRAVVEQVNPSISKEG 272
Query: 900 ------GKYTP--VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
G P + + +VGGMS KQ RI+ + I++ATPGRLW+ + ++
Sbjct: 273 VKEDKKGPRGPPLISIGGIVGGMSNLKQRRIIERGMDIMIATPGRLWDLLGEDDSLAQQV 332
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTE-------------------------- 985
I +LV+DE DRMIE+GHF EL NIL R+T +
Sbjct: 333 RAIRFLVLDEADRMIETGHFEELHNIL-RLTRRDSEGDAIDDASNIAFQRAGIEVTAGGG 391
Query: 986 -TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK--SPKIVD 1042
TS+ QTFVFSATL+ L+ +L +K KK ++ L + L+ + P+I+D
Sbjct: 392 STSENMQTFVFSATLSRDLQMNLKKRKRGPPRKKGENPPSTLDELLERLDFRDEQPEIID 451
Query: 1043 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 1102
LT + G++ TL E+K+ C EKD YLYYF+L++PGR+LVF ++I ++R+ +L +L
Sbjct: 452 LTPEQGVSHTLQEAKLECVSAEKDLYLYYFLLRYPGRSLVFVSAIDGIRRIVPMLELLGV 511
Query: 1103 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162
+ PLH+ + Q+QRLKNL+RF+ +++L+ATDVAARGLDIP +EHVIHY +PRT++ YI
Sbjct: 512 NVFPLHSQLQQKQRLKNLERFKAAPDAVLVATDVAARGLDIPAVEHVIHYQIPRTADTYI 571
Query: 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
HRSGRTARA G +L+L DE + + L + + P+ P++ VL +K+R+ LA
Sbjct: 572 HRSGRTARAEKPGFSLLLCSPDEKRVQRALLQKLGRATEPPELPVEHEVLDKLKERMALA 631
Query: 1223 KSIEYLESKIKK-NRPDNWLH 1242
K I+ ++ KIKK NWL
Sbjct: 632 KKIDDIQHKIKKATHEKNWLQ 652
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 199/567 (35%), Positives = 284/567 (50%), Gaps = 131/567 (23%)
Query: 115 SKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTP 174
S K Q K + +A +L V+ S +E + + EW F + I R+L+ GF P
Sbjct: 130 SHKTAQPSKPRSVQPAA--PILGVEQSFDEYL---IPEWQLFPLKNQIKRSLHGLGFTKP 184
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234
T+IQS +P AL R DI+G AETGSGKTLA+G+PI+ ++ K
Sbjct: 185 TEIQSRSIPIALQGR-DIIGVAETGSGKTLAYGLPIINQLLVKYAG-------------- 229
Query: 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDA------------ 282
+ + L ALILAPTRELA+QV H+
Sbjct: 230 -----------------VIPPEQRTLSALILAPTRELALQVGEHLRAVVEQVNPSISKEG 272
Query: 283 ------GKYTP--VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
G P + + +VGGMS KQ RI+ + I++ATPGRLW+ + ++
Sbjct: 273 VKEDKKGPRGPPLISIGGIVGGMSNLKQRRIIERGMDIMIATPGRLWDLLGEDDSLAQQV 332
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
I +LV+DE DRMIE+GHF EL NIL R+T ++ E + NI +
Sbjct: 333 RAIRFLVLDEADRMIETGHFEELHNIL-RLTRRDS--------EGDAIDDASNIAFQRAG 383
Query: 395 TE-------TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
E TS+ QTFVFSATL+ L+ +L +K KK ++ L + L+ +
Sbjct: 384 IEVTAGGGSTSENMQTFVFSATLSRDLQMNLKKRKRGPPRKKGENPPSTLDELLERLDFR 443
Query: 448 --SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSP 505
P+I+DLT + G++ TL E+K+ C EKD YLYYF+L++PGR+L + + I+
Sbjct: 444 DEQPEIIDLTPEQGVSHTLQEAKLECVSAEKDLYLYYFLLRYPGRSLV-FVSAIDGIR-- 500
Query: 506 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 565
+IV + E +G+ VF
Sbjct: 501 RIVPMLELLGVN-------------------------------VF--------------- 514
Query: 566 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625
PLH+ + Q+QRLKNL+RF+ +++L+ATDVAARGLDIP +EHVIHY +PRT+
Sbjct: 515 -------PLHSQLQQKQRLKNLERFKAAPDAVLVATDVAARGLDIPAVEHVIHYQIPRTA 567
Query: 626 EIYIHRSGRTARANNEGLTVVLIESDE 652
+ YIHRSGRTARA G +++L DE
Sbjct: 568 DTYIHRSGRTARAEKPGFSLLLCSPDE 594
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA G +L+L DE + + L + + P+ P++ VL +K+R
Sbjct: 568 DTYIHRSGRTARAEKPGFSLLLCSPDEKRVQRALLQKLGRATEPPELPVEHEVLDKLKER 627
Query: 1298 IDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDENLIQ 1338
+ LAK I+ ++ KIKK NWL++ A ++I +D E+ Q
Sbjct: 628 MALAKKIDDIQHKIKKATHEKNWLQETADALEIELDSEDQGQ 669
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 1340 NQLLIFESRNL---RYSWDALILAPTRELAIQVQNHILDA------------------GK 1378
NQLL+ + + + + ALILAPTRELA+QV H+ G
Sbjct: 221 NQLLVKYAGVIPPEQRTLSALILAPTRELALQVGEHLRAVVEQVNPSISKEGVKEDKKGP 280
Query: 1379 YTP--VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
P + + +VGGMS KQ RI+ + I++ATPG L
Sbjct: 281 RGPPLISIGGIVGGMSNLKQRRIIERGMDIMIATPGRL 318
>gi|242076434|ref|XP_002448153.1| hypothetical protein SORBIDRAFT_06g022240 [Sorghum bicolor]
gi|241939336|gb|EES12481.1| hypothetical protein SORBIDRAFT_06g022240 [Sorghum bicolor]
Length = 807
Score = 339 bits (870), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 188/455 (41%), Positives = 274/455 (60%), Gaps = 42/455 (9%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
++EW + + +++A+ + GFK PT IQ P+A KD++GAAETGSGKTLAFG+P
Sbjct: 212 VSEWRELRLHPLLLKAMRRLGFKEPTPIQKSCFPAAAHQGKDVIGAAETGSGKTLAFGLP 271
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL ++ EE E + L +E ++ ++E S + L ALIL PTR
Sbjct: 272 ILQRLL-------EEREKAARLHQEGDK----MDERSGGSP---------LRALILTPTR 311
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA QV +H+ DA K+ + V +VGG+S EKQ R+L K P I+V TPGRLWE + + +
Sbjct: 312 ELAKQVCDHLKDAAKFLGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRLWEHMSMNNQ 371
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS------------------- 987
HL EL+ +++ V+DE DRMIE GHF EL++I++ + +T S
Sbjct: 372 HLVELHSLSFFVLDEADRMIERGHFRELQSIIEMLPLTNGSDEQSAKTMPNCETVPNLQI 431
Query: 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQDLLNIK-SPKIVDLTE 1045
+ RQTFVFSATL S LK+G S SK + D SI+ L +K + +IVDLT+
Sbjct: 432 KKRQTFVFSATLALSSNFRKKLKRGLSTSKASTPDDVSSIEALSKQAGMKPNAEIVDLTK 491
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSP 1104
+ + L ES I C ++KD+YLYY + H GRT++FC SI++++ ++ +L +L +
Sbjct: 492 ASILPEKLEESFIECSEEDKDAYLYYILSVHGQGRTIIFCTSIAALRHISSILRILGINV 551
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
L HA M QR R+K +DRFR NSIL+ATD ARG+D + VIHY +P ++++YIHR
Sbjct: 552 LTNHAQMQQRARMKAVDRFRGSENSILVATDGFARGMDFDDVRTVIHYQLPHSTDVYIHR 611
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
SGRTAR + G ++ LI + + + SL K+
Sbjct: 612 SGRTARKSLAGCSIALISPTDKSKFYSLCKSLSKE 646
Score = 303 bits (776), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 194/515 (37%), Positives = 275/515 (53%), Gaps = 95/515 (18%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
++EW + + +++A+ + GFK PT IQ P+A KD++GAAETGSGKTLAFG+P
Sbjct: 212 VSEWRELRLHPLLLKAMRRLGFKEPTPIQKSCFPAAAHQGKDVIGAAETGSGKTLAFGLP 271
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL ++ EE E + L +E ++ ++E S + L ALIL PTR
Sbjct: 272 ILQRLL-------EEREKAARLHQEGDK----MDERSGGSP---------LRALILTPTR 311
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA QV +H+ DA K+ + V +VGG+S EKQ R+L K P I+V TPGRLWE + + +
Sbjct: 312 ELAKQVCDHLKDAAKFLGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRLWEHMSMNNQ 371
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS--QPRQTMIESGHFPELKN 387
HL EL+ +++ V+DE DRMIE GHF EL++I++ + +T S Q +TM P L+
Sbjct: 372 HLVELHSLSFFVLDEADRMIERGHFRELQSIIEMLPLTNGSDEQSAKTMPNCETVPNLQ- 430
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQDLLNI 446
+ RQTFVFSATL S LK+G S SK + D SI+ L +
Sbjct: 431 ----------IKKRQTFVFSATLALSSNFRKKLKRGLSTSKASTPDDVSSIEALSKQAGM 480
Query: 447 K-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLCEEIQDLLNIKS 504
K + +IVDLT+ + + L ES I C ++KD+YLYY + H GRT+
Sbjct: 481 KPNAEIVDLTKASILPEKLEESFIECSEEDKDAYLYYILSVHGQGRTI------------ 528
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
I C ++ ISS+ R+
Sbjct: 529 --------------------IFCT------------------SIAALRHISSILRI---- 546
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L + L HA M QR R+K +DRFR NSIL+ATD ARG+D + VIHY +P +
Sbjct: 547 --LGINVLTNHAQMQQRARMKAVDRFRGSENSILVATDGFARGMDFDDVRTVIHYQLPHS 604
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659
+++YIHRSGRTAR + G ++ LI + K+KF
Sbjct: 605 TDVYIHRSGRTARKSLAGCSIALISPTD---KSKF 636
Score = 70.9 bits (172), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA QV +H+ DA K+ + V +VGG+S EKQ R+L K P I+V TPG L
Sbjct: 304 ALILTPTRELAKQVCDHLKDAAKFLGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRL 362
>gi|79404523|ref|NP_188307.3| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis thaliana]
gi|374095486|sp|Q93Y39.3|RH13_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 13
gi|332642351|gb|AEE75872.1| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis thaliana]
Length = 826
Score = 339 bits (869), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 198/500 (39%), Positives = 287/500 (57%), Gaps = 43/500 (8%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ W + +++++Y+ FK PTKIQ A KD++GAAETGSGKTLAFG+P
Sbjct: 189 FSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLP 248
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL +++ E E L L+ E A L ALI+ PTR
Sbjct: 249 ILQRLLD---------------EREKVGKLYALKGEEAQKY----AADGYLRALIITPTR 289
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPGRLWE + G
Sbjct: 290 ELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEK 349
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET-------------------S 987
HL EL+ +++ V+DE DRM+E GHF EL++ILD + +T+
Sbjct: 350 HLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPK 409
Query: 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKRLQDLLNIK-SPKIVDLTE 1045
+ RQTFVFSAT+ S LK+G SKSK+ S G+ SI+ L + ++ + I+DLT
Sbjct: 410 KKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTT 469
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSP 1104
+ + ES I C+ EKD+YLYY + H GRT+VFC S++ ++ ++ LL +L
Sbjct: 470 TSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDV 529
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
L + M QR RLK++DRFR N IL+ATD+ ARG+DI + +IHY +P ++E+Y+HR
Sbjct: 530 CTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHR 589
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
GRTARA +G ++ LIE +E + + S + + FP+D S + ++KR+ LA+
Sbjct: 590 CGRTARAFADGCSIALIEPNETSKFYTLCKSFSME-SVKIFPLDNSYMPAVRKRLYLARQ 648
Query: 1225 IEYLESKIKKNRPD-NWLHR 1243
I +E K + D WL +
Sbjct: 649 IYEIERKGSRENADRTWLKK 668
Score = 281 bits (720), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 188/508 (37%), Positives = 266/508 (52%), Gaps = 91/508 (17%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ W + +++++Y+ FK PTKIQ A KD++GAAETGSGKTLAFG+P
Sbjct: 189 FSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLP 248
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL +++ E E L L+ E A L ALI+ PTR
Sbjct: 249 ILQRLLD---------------EREKVGKLYALKGEEAQKY----AADGYLRALIITPTR 289
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPGRLWE + G
Sbjct: 290 ELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEK 349
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
HL EL+ +++ V+DE DRM+E GHF EL++ILD + +T+ +P + G +K+
Sbjct: 350 HLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTD--KPNE-----GKTQTVKS-- 400
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKRLQDLLNIK- 447
+ + + RQTFVFSAT+ S LK+G SKSK+ S G+ SI+ L + ++
Sbjct: 401 NDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRD 460
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTL--CEEIQDLLNIKS 504
+ I+DLT + + ES I C+ EKD+YLYY + H GRT+ C + DL +I
Sbjct: 461 NVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHIS- 519
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
G+ K L L C S +K
Sbjct: 520 ----------GLLKIL--------------------------GLDVCTLFSEMK------ 537
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
QR RLK++DRFR N IL+ATD+ ARG+DI + +IHY +P +
Sbjct: 538 ---------------QRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHS 582
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDE 652
+E+Y+HR GRTARA +G ++ LIE +E
Sbjct: 583 AEVYVHRCGRTARAFADGCSIALIEPNE 610
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPG L
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRL 340
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA +G ++ LIE +E + + S + + FP+D S + ++KR+
Sbjct: 586 YVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSME-SVKIFPLDNSYMPAVRKRLY 644
Query: 1300 LAKSIEYLESKIKKNRPD-NWLEKAAKDM 1327
LA+ I +E K + D WL+K A+ M
Sbjct: 645 LARQIYEIERKGSRENADRTWLKKHAESM 673
>gi|7939577|dbj|BAA95778.1| ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 832
Score = 339 bits (869), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 198/500 (39%), Positives = 287/500 (57%), Gaps = 43/500 (8%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ W + +++++Y+ FK PTKIQ A KD++GAAETGSGKTLAFG+P
Sbjct: 189 FSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLP 248
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL +++ E E L L+ E A L ALI+ PTR
Sbjct: 249 ILQRLLD---------------EREKVGKLYALKGEEAQKY----AADGYLRALIITPTR 289
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPGRLWE + G
Sbjct: 290 ELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEK 349
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET-------------------S 987
HL EL+ +++ V+DE DRM+E GHF EL++ILD + +T+
Sbjct: 350 HLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPK 409
Query: 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKRLQDLLNIK-SPKIVDLTE 1045
+ RQTFVFSAT+ S LK+G SKSK+ S G+ SI+ L + ++ + I+DLT
Sbjct: 410 KKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTT 469
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSP 1104
+ + ES I C+ EKD+YLYY + H GRT+VFC S++ ++ ++ LL +L
Sbjct: 470 TSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDV 529
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
L + M QR RLK++DRFR N IL+ATD+ ARG+DI + +IHY +P ++E+Y+HR
Sbjct: 530 CTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHR 589
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
GRTARA +G ++ LIE +E + + S + + FP+D S + ++KR+ LA+
Sbjct: 590 CGRTARAFADGCSIALIEPNETSKFYTLCKSFSME-SVKIFPLDNSYMPAVRKRLYLARQ 648
Query: 1225 IEYLESKIKKNRPD-NWLHR 1243
I +E K + D WL +
Sbjct: 649 IYEIERKGSRENADRTWLKK 668
Score = 281 bits (720), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 188/508 (37%), Positives = 266/508 (52%), Gaps = 91/508 (17%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ W + +++++Y+ FK PTKIQ A KD++GAAETGSGKTLAFG+P
Sbjct: 189 FSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLP 248
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL +++ E E L L+ E A L ALI+ PTR
Sbjct: 249 ILQRLLD---------------EREKVGKLYALKGEEAQKY----AADGYLRALIITPTR 289
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPGRLWE + G
Sbjct: 290 ELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEK 349
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
HL EL+ +++ V+DE DRM+E GHF EL++ILD + +T+ +P + G +K+
Sbjct: 350 HLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTD--KPNE-----GKTQTVKS-- 400
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKRLQDLLNIK- 447
+ + + RQTFVFSAT+ S LK+G SKSK+ S G+ SI+ L + ++
Sbjct: 401 NDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRD 460
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTL--CEEIQDLLNIKS 504
+ I+DLT + + ES I C+ EKD+YLYY + H GRT+ C + DL +I
Sbjct: 461 NVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHIS- 519
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
G+ K L L C S +K
Sbjct: 520 ----------GLLKIL--------------------------GLDVCTLFSEMK------ 537
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
QR RLK++DRFR N IL+ATD+ ARG+DI + +IHY +P +
Sbjct: 538 ---------------QRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHS 582
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDE 652
+E+Y+HR GRTARA +G ++ LIE +E
Sbjct: 583 AEVYVHRCGRTARAFADGCSIALIEPNE 610
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPG L
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRL 340
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA +G ++ LIE +E + + S + + FP+D S + ++KR+
Sbjct: 586 YVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSME-SVKIFPLDNSYMPAVRKRLY 644
Query: 1300 LAKSIEYLESKIKKNRPD-NWLEKAAKDM 1327
LA+ I +E K + D WL+K A+ M
Sbjct: 645 LARQIYEIERKGSRENADRTWLKKHAESM 673
>gi|449544539|gb|EMD35512.1| hypothetical protein CERSUDRAFT_139322 [Ceriporiopsis subvermispora
B]
Length = 783
Score = 338 bits (868), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 220/595 (36%), Positives = 313/595 (52%), Gaps = 128/595 (21%)
Query: 745 YTSANKELLEV-----DTSNNEDMF------VQ--MAEWVKFNIPETIIRALYQKGFKTP 791
Y SA +E+ V D NNED V+ + W +F++ + RA+Y + F P
Sbjct: 99 YFSAGEEVAAVVAPSMDEPNNEDATQVPPFDVENLLPNWREFSLHPQLNRAVYAQKFSKP 158
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851
T IQ+ +P A+ R DIVG AETGSGKTLA+G+PIL +
Sbjct: 159 TPIQAEALPLAMQGR-DIVGVAETGSGKTLAYGLPILQLL-------------------- 197
Query: 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ---NHILD---------- 898
L E S + T + R + ALILAPTRELA+QV N L+
Sbjct: 198 -------LTEASVSGTSG-RPGRRPVRALILAPTRELALQVSTHLNACLNSVEGLASEDA 249
Query: 899 ---------------------------------------AGKYTP---VKVACVVGGMST 916
A K P V VA +VGGMS
Sbjct: 250 QNVKQEETDTSPVTKGKGKARAKGKNARKQDSSTSTSSGAAKSKPPPLVSVAAIVGGMSA 309
Query: 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 976
+KQ RIL++ +LVATPGRLW+ IQ + ++ + +LV+DE DRMIE+GHF E+ N
Sbjct: 310 QKQKRILSRGVDVLVATPGRLWDIIQEDNELADQIENLRFLVLDEADRMIETGHFAEMDN 369
Query: 977 ILDRVTM------TETSQPR---------------------QTFVFSATLTHSLKNSLNL 1009
IL R+TM S+P QTFVFSATL+ L+ +L
Sbjct: 370 IL-RLTMRFPKEDGAESEPATGLEGSVEPEESKEGVKKGDLQTFVFSATLSKDLQRNLKR 428
Query: 1010 KKGQSKSKKVSKGD-PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
++ K K L+ SP ++D++ G+ TL ESK+ C +KD+Y
Sbjct: 429 RQRPKKRKNDKPASTLDDLLLRLDFRDASPAVIDISPVGGVVATLQESKVECLASDKDAY 488
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
LYYF+L++PGRTLVF +SI ++RL L+ +L PLH+ + QRQRLKNLDRF+ N
Sbjct: 489 LYYFLLRYPGRTLVFLSSIDGIRRLLPLMDLLGLPAFPLHSQLEQRQRLKNLDRFKATPN 548
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
++LLATDVAARGLD+P ++HV+HY VPR ++ Y+HR+GRTARA+ G +L+L DE L
Sbjct: 549 AVLLATDVAARGLDVPAVDHVVHYQVPRAADGYVHRNGRTARASRRGFSLLLCAPDERRL 608
Query: 1189 YIKMFNSLEKK-VDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
+ SL ++ ++P+ P++ +L +K RI LA+ ++ + K++K + + NWL
Sbjct: 609 VRALLGSLGRQEEEIPEMPVELYLLDKLKARIQLAREVDTAQHKVRKEKHERNWL 663
Score = 274 bits (701), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 202/594 (34%), Positives = 287/594 (48%), Gaps = 156/594 (26%)
Query: 128 YTSANKELLEV-----DTSNNEDMF------VQ--MAEWVKFNIPETIIRALYQKGFKTP 174
Y SA +E+ V D NNED V+ + W +F++ + RA+Y + F P
Sbjct: 99 YFSAGEEVAAVVAPSMDEPNNEDATQVPPFDVENLLPNWREFSLHPQLNRAVYAQKFSKP 158
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234
T IQ+ +P A+ R DIVG AETGSGKTLA+G+PIL +
Sbjct: 159 TPIQAEALPLAMQGR-DIVGVAETGSGKTLAYGLPILQLL-------------------- 197
Query: 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ---NHILD---------- 281
L E S + T + R + ALILAPTRELA+QV N L+
Sbjct: 198 -------LTEASVSGTSG-RPGRRPVRALILAPTRELALQVSTHLNACLNSVEGLASEDA 249
Query: 282 ---------------------------------------AGKYTP---VKVACVVGGMST 299
A K P V VA +VGGMS
Sbjct: 250 QNVKQEETDTSPVTKGKGKARAKGKNARKQDSSTSTSSGAAKSKPPPLVSVAAIVGGMSA 309
Query: 300 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 359
+KQ RIL++ +LVATPGRLW+ IQ + ++ + +LV+DE DR
Sbjct: 310 QKQKRILSRGVDVLVATPGRLWDIIQEDNELADQIENLRFLVLDEADR------------ 357
Query: 360 ILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419
MIE+GHF E +D + P++ S T L+ S+
Sbjct: 358 ----------------MIETGHFAE----MDNILRLTMRFPKEDGAESEPAT-GLEGSVE 396
Query: 420 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 479
++ + + V KGD LQ + + TL SK L ++ ++
Sbjct: 397 PEESK---EGVKKGD-----LQTFV---------------FSATL--SKDLQRNLKRRQR 431
Query: 480 LYYFILQHPGRTLCEEIQDLLNI-KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 538
P TL + + L SP ++D++ G+ TL ESK+ C +KD+YLYY
Sbjct: 432 PKKRKNDKPASTLDDLLLRLDFRDASPAVIDISPVGGVVATLQESKVECLASDKDAYLYY 491
Query: 539 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598
F+L++PGRTLVF +SI ++RL L+ +L PLH+ + QRQRLKNLDRF+ N++L
Sbjct: 492 FLLRYPGRTLVFLSSIDGIRRLLPLMDLLGLPAFPLHSQLEQRQRLKNLDRFKATPNAVL 551
Query: 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
LATDVAARGLD+P ++HV+HY VPR ++ Y+HR+GRTARA+ G +++L DE
Sbjct: 552 LATDVAARGLDVPAVDHVVHYQVPRAADGYVHRNGRTARASRRGFSLLLCAPDE 605
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK-VDLPDFPIDESVLSLIKK 1296
D ++HR+GRTARA+ G +L+L DE L + SL ++ ++P+ P++ +L +K
Sbjct: 579 DGYVHRNGRTARASRRGFSLLLCAPDERRLVRALLGSLGRQEEEIPEMPVELYLLDKLKA 638
Query: 1297 RIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDE 1334
RI LA+ ++ + K++K + + NWL+ A+ M+I +D +
Sbjct: 639 RIQLAREVDTAQHKVRKEKHERNWLKTTAEAMEIELDSD 677
Score = 45.1 bits (105), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 53/136 (38%), Gaps = 62/136 (45%)
Query: 1341 QLLIFES-------RNLRYSWDALILAPTRELAIQVQ---NHILD--------------- 1375
QLL+ E+ R R ALILAPTRELA+QV N L+
Sbjct: 195 QLLLTEASVSGTSGRPGRRPVRALILAPTRELALQVSTHLNACLNSVEGLASEDAQNVKQ 254
Query: 1376 ----------------------------------AGKYTP---VKVACVVGGMSTEKQLR 1398
A K P V VA +VGGMS +KQ R
Sbjct: 255 EETDTSPVTKGKGKARAKGKNARKQDSSTSTSSGAAKSKPPPLVSVAAIVGGMSAQKQKR 314
Query: 1399 ILNKCPHILVATPGAL 1414
IL++ +LVATPG L
Sbjct: 315 ILSRGVDVLVATPGRL 330
>gi|15450790|gb|AAK96666.1| ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 797
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 198/500 (39%), Positives = 287/500 (57%), Gaps = 43/500 (8%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ W + +++++Y+ FK PTKIQ A KD++GAAETGSGKTLAFG+P
Sbjct: 189 FSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLP 248
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL +++ E E L L+ E A L ALI+ PTR
Sbjct: 249 ILQRLLD---------------EREKVGKLYALKGEEAQKY----AADGYLRALIITPTR 289
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPGRLWE + G
Sbjct: 290 ELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEK 349
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET-------------------S 987
HL EL+ +++ V+DE DRM+E GHF EL++ILD + +T+
Sbjct: 350 HLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPK 409
Query: 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKRLQDLLNIK-SPKIVDLTE 1045
+ RQTFVFSAT+ S LK+G SKSK+ S G+ SI+ L + ++ + I+DLT
Sbjct: 410 KKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTT 469
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSP 1104
+ + ES I C+ EKD+YLYY + H GRT+VFC S++ ++ ++ LL +L
Sbjct: 470 TSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDV 529
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
L + M QR RLK++DRFR N IL+ATD+ ARG+DI + +IHY +P ++E+Y+HR
Sbjct: 530 CTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHR 589
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
GRTARA +G ++ LIE +E + + S + + FP+D S + ++KR+ LA+
Sbjct: 590 CGRTARAFADGCSIALIEPNETSKFYTLCKSFSME-SVKIFPLDNSYMPAVRKRLYLARQ 648
Query: 1225 IEYLESKIKKNRPD-NWLHR 1243
I +E K + D WL +
Sbjct: 649 IYEIERKGSRENADRTWLKK 668
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 188/508 (37%), Positives = 266/508 (52%), Gaps = 91/508 (17%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ W + +++++Y+ FK PTKIQ A KD++GAAETGSGKTLAFG+P
Sbjct: 189 FSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLP 248
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL +++ E E L L+ E A L ALI+ PTR
Sbjct: 249 ILQRLLD---------------EREKVGKLYALKGEEAQKY----AADGYLRALIITPTR 289
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPGRLWE + G
Sbjct: 290 ELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEK 349
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
HL EL+ +++ V+DE DRM+E GHF EL++ILD + +T+ +P + G +K+
Sbjct: 350 HLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTD--KPNE-----GKTQTVKS-- 400
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKRLQDLLNIK- 447
+ + + RQTFVFSAT+ S LK+G SKSK+ S G+ SI+ L + ++
Sbjct: 401 NDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRD 460
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTL--CEEIQDLLNIKS 504
+ I+DLT + + ES I C+ EKD+YLYY + H GRT+ C + DL +I
Sbjct: 461 NVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHIS- 519
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
G+ K L L C S +K
Sbjct: 520 ----------GLLKIL--------------------------GLDVCTLFSEMK------ 537
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
QR RLK++DRFR N IL+ATD+ ARG+DI + +IHY +P +
Sbjct: 538 ---------------QRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHS 582
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDE 652
+E+Y+HR GRTARA +G ++ LIE +E
Sbjct: 583 AEVYVHRCGRTARAFADGCSIALIEPNE 610
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPG L
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRL 340
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA +G ++ LIE +E + + S + + FP+D S + ++KR+
Sbjct: 586 YVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSME-SVKIFPLDNSYMPAVRKRLY 644
Query: 1300 LAKSIEYLESKIKKNRPD-NWLEKAAKDM 1327
LA+ I +E K + D WL+K A+ M
Sbjct: 645 LARQIYEIERKGSRENADRTWLKKHAESM 673
>gi|350587164|ref|XP_003356832.2| PREDICTED: ATP-dependent RNA helicase DDX24-like, partial [Sus
scrofa]
Length = 444
Score = 336 bits (862), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 168/329 (51%), Positives = 230/329 (69%), Gaps = 5/329 (1%)
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ HL+ L ++ LVIDE DR
Sbjct: 1 IKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKQPHLSNLRQLRCLVIDEADR 60
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG 1022
M+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K +K
Sbjct: 61 MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHAKKIDKTAKL 120
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082
D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGRTLV
Sbjct: 121 DLL---MQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLV 177
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLD
Sbjct: 178 FANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLATDVAARGLD 237
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
IP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+L+ +++ + K++ +L+K D+
Sbjct: 238 IPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLVGPEDVINFKKIYKTLKKDEDI 297
Query: 1203 PDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
P FP+ + +K+RI LA+ IE E +
Sbjct: 298 PLFPVQTKYMDAVKERIRLARQIEKAEYR 326
Score = 276 bits (707), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 155/368 (42%), Positives = 206/368 (55%), Gaps = 89/368 (24%)
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ HL+ L ++ LVIDE DR
Sbjct: 1 IKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKQPHLSNLRQLRCLVIDEADR 60
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
M+E G HF EL +L+ + ++ + RQT VFS
Sbjct: 61 MVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQTLVFS 92
Query: 408 ATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
ATLT H + KK K K +K D L +KIG+
Sbjct: 93 ATLTLVHQAPARILHKKHAKKIDKTAKLDL------------------LMQKIGMRG--- 131
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI 525
PK++DLT +TLTE+KI
Sbjct: 132 --------------------------------------KPKVIDLTRNEATVETLTETKI 153
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+
Sbjct: 154 HCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLR 213
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL++
Sbjct: 214 NLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSL 273
Query: 646 VLIESDEI 653
+L+ +++
Sbjct: 274 MLVGPEDV 281
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+L+ +++ + K++ +L+K D+P FP+ + +K+RI
Sbjct: 256 YVHRSGRTARATNEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIR 315
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEK 1322
LA+ IE E + + ++W+E+
Sbjct: 316 LARQIEKAEYRNFQACLHNSWIEQ 339
Score = 47.4 bits (111), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 1382 VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 1 IKTAILVGGMSTQKQQRMLNRQPEIVIATPGRL 33
>gi|227202696|dbj|BAH56821.1| AT3G16840 [Arabidopsis thaliana]
Length = 827
Score = 336 bits (862), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 197/500 (39%), Positives = 286/500 (57%), Gaps = 43/500 (8%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ W + +++++Y+ FK PTKIQ A KD++GAAETGSGKTLAFG+P
Sbjct: 190 FSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLP 249
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL +++ E E L L+ E A L ALI+ PTR
Sbjct: 250 ILQRLLD---------------EREKVGKLYALKGEEAQKY----AADGYLRALIITPTR 290
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPGRLWE + G
Sbjct: 291 ELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEK 350
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET-------------------S 987
HL EL+ +++ V+DE DRM+E GHF EL++ILD + +T+
Sbjct: 351 HLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDRPNEGKTQTVKSNDTVLNVPK 410
Query: 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKRLQDLLNIK-SPKIVDLTE 1045
+ RQTFVFSAT+ S LK+G SKSK+ S G+ SI+ L + ++ + I+DLT
Sbjct: 411 KKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTT 470
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSP 1104
+ + ES I C+ EKD+YLYY + H GRT+VFC S++ ++ ++ LL +L
Sbjct: 471 TSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDV 530
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
L + M QR RLK++DRFR N IL+ATD+ ARG+DI + +IHY + ++E+Y+HR
Sbjct: 531 CTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLQHSAEVYVHR 590
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
GRTARA +G ++ LIE +E + + S + + FP+D S + ++KR+ LA+
Sbjct: 591 CGRTARAFADGCSIALIEPNETSKFYTLCKSFSME-SVKIFPLDNSYMPAVRKRLYLARQ 649
Query: 1225 IEYLESKIKKNRPD-NWLHR 1243
I +E K + D WL +
Sbjct: 650 IYEIERKGSRENADRTWLKK 669
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 187/508 (36%), Positives = 265/508 (52%), Gaps = 91/508 (17%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ W + +++++Y+ FK PTKIQ A KD++GAAETGSGKTLAFG+P
Sbjct: 190 FSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLP 249
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL +++ E E L L+ E A L ALI+ PTR
Sbjct: 250 ILQRLLD---------------EREKVGKLYALKGEEAQKY----AADGYLRALIITPTR 290
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPGRLWE + G
Sbjct: 291 ELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEK 350
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
HL EL+ +++ V+DE DRM+E GHF EL++ILD + +T+ +P + G +K+
Sbjct: 351 HLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTD--RPNE-----GKTQTVKS-- 401
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKRLQDLLNIK- 447
+ + + RQTFVFSAT+ S LK+G SKSK+ S G+ SI+ L + ++
Sbjct: 402 NDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRD 461
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTL--CEEIQDLLNIKS 504
+ I+DLT + + ES I C+ EKD+YLYY + H GRT+ C + DL +I
Sbjct: 462 NVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHIS- 520
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
G+ K L L C S +K
Sbjct: 521 ----------GLLKIL--------------------------GLDVCTLFSEMK------ 538
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
QR RLK++DRFR N IL+ATD+ ARG+DI + +IHY + +
Sbjct: 539 ---------------QRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLQHS 583
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDE 652
+E+Y+HR GRTARA +G ++ LIE +E
Sbjct: 584 AEVYVHRCGRTARAFADGCSIALIEPNE 611
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPG L
Sbjct: 283 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRL 341
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA +G ++ LIE +E + + S + + FP+D S + ++KR+
Sbjct: 587 YVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSME-SVKIFPLDNSYMPAVRKRLY 645
Query: 1300 LAKSIEYLESKIKKNRPD-NWLEKAAKDM 1327
LA+ I +E K + D WL+K A+ M
Sbjct: 646 LARQIYEIERKGSRENADRTWLKKHAESM 674
>gi|395323772|gb|EJF56229.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 773
Score = 335 bits (860), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 209/545 (38%), Positives = 299/545 (54%), Gaps = 100/545 (18%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ EW F + + RALY K F TPT IQ+ +P AL KD+VG AETGSGKTLA+G+P
Sbjct: 129 LPEWHSFKLHPQLARALYAKKFTTPTPIQAQTLPLAL-KNKDVVGVAETGSGKTLAYGLP 187
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL ++ E+ + KTR + AL+LAPTR
Sbjct: 188 ILHYLLT----------------------------EAYSRPIPSNKTRRPVRALVLAPTR 219
Query: 887 ELAIQVQNHI--------LDA-----------------------------------GKYT 903
ELA+QV +H+ +DA K+
Sbjct: 220 ELALQVSSHLNACLSSMDVDAVENKTGDDEVSKKGKNKGKAKAKAKAAETPALENKPKHP 279
Query: 904 P-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDET 962
P V VA VVGGMS +KQ RI+++ +LVATPGRLW+ +Q T++ + +LV+DE
Sbjct: 280 PLVSVAAVVGGMSAQKQRRIISRGVDVLVATPGRLWDILQEDDELATQIEFLRFLVLDEA 339
Query: 963 DRMIESGHFPELKNILDRVTMTETS----QPR------------------QTFVFSATLT 1000
DRMIE+GHF EL NIL R+T+ ++ +P QTFVFSATL+
Sbjct: 340 DRMIETGHFAELDNIL-RLTLRKSDDDVIEPENKMDEEEDTKDGVRGGDLQTFVFSATLS 398
Query: 1001 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIGITKTLTESKI 1058
L+ +L + +K K ++ L L+ + SP +VD+ + LTES++
Sbjct: 399 KDLQQNLKRRARPKARRKADKPASTLDDLLLRLDFRDPSPAVVDIAPASRVPAALTESRV 458
Query: 1059 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
C +KD+YLYYF+L++PGRTLVF ++I ++RL LL +L LH+ + QRQRLK
Sbjct: 459 DCLAADKDAYLYYFLLRYPGRTLVFLSAIDGIRRLLPLLALLGVPAFQLHSQLEQRQRLK 518
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
NLDRF N++LLATDVAARGLDI G++HV+HY PRT++ Y+HR+GRTARA G L
Sbjct: 519 NLDRFASTRNAVLLATDVAARGLDITGVDHVVHYQAPRTADAYVHRNGRTARAMRRGFAL 578
Query: 1179 VLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
++ DE + + L + + +L + P++ +L +K R+ LA+ I+ L+ K KK R
Sbjct: 579 LMCAPDERRVVRALMRGLGREEEELAEMPVELYMLDKLKARVQLAREIDRLQHKAKKERH 638
Query: 1238 D-NWL 1241
+ +WL
Sbjct: 639 ERSWL 643
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 141/394 (35%), Positives = 200/394 (50%), Gaps = 90/394 (22%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ EW F + + RALY K F TPT IQ+ +P AL KD+VG AETGSGKTLA+G+P
Sbjct: 129 LPEWHSFKLHPQLARALYAKKFTTPTPIQAQTLPLAL-KNKDVVGVAETGSGKTLAYGLP 187
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL ++ E+ + KTR + AL+LAPTR
Sbjct: 188 ILHYLLT----------------------------EAYSRPIPSNKTRRPVRALVLAPTR 219
Query: 270 ELAIQVQNHI--------LDA-----------------------------------GKYT 286
ELA+QV +H+ +DA K+
Sbjct: 220 ELALQVSSHLNACLSSMDVDAVENKTGDDEVSKKGKNKGKAKAKAKAAETPALENKPKHP 279
Query: 287 P-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDET 345
P V VA VVGGMS +KQ RI+++ +LVATPGRLW+ +Q T++ + +LV+DE
Sbjct: 280 PLVSVAAVVGGMSAQKQRRIISRGVDVLVATPGRLWDILQEDDELATQIEFLRFLVLDEA 339
Query: 346 DRMIESGHFPELKNILDRVTMTETS----QPRQTMIESGHFPELKNILDRVTMTETSQPR 401
DRMIE+GHF EL NIL R+T+ ++ +P M E ++ D V +
Sbjct: 340 DRMIETGHFAELDNIL-RLTLRKSDDDVIEPENKMDEE------EDTKDGVRGGDL---- 388
Query: 402 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIG 459
QTFVFSATL+ L+ +L + +K K ++ L L+ + SP +VD+
Sbjct: 389 QTFVFSATLSKDLQQNLKRRARPKARRKADKPASTLDDLLLRLDFRDPSPAVVDIAPASR 448
Query: 460 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
+ LTES++ C +KD+YLYYF+L++PGRTL
Sbjct: 449 VPAALTESRVDCLAADKDAYLYYFLLRYPGRTLV 482
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 2/171 (1%)
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
SP +VD+ + LTES++ C +KD+YLYYF+L++PGRTLVF ++I ++RL L
Sbjct: 437 SPAVVDIAPASRVPAALTESRVDCLAADKDAYLYYFLLRYPGRTLVFLSAIDGIRRLLPL 496
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
L +L LH+ + QRQRLKNLDRF N++LLATDVAARGLDI G++HV+HY PR
Sbjct: 497 LALLGVPAFQLHSQLEQRQRLKNLDRFASTRNAVLLATDVAARGLDITGVDHVVHYQAPR 556
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAE 674
T++ Y+HR+GRTARA G +++ DE + L EEEE AE
Sbjct: 557 TADAYVHRNGRTARAMRRGFALLMCAPDE--RRVVRALMRGLGREEEELAE 605
Score = 61.6 bits (148), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKK 1296
D ++HR+GRTARA G L++ DE + + L + + +L + P++ +L +K
Sbjct: 559 DAYVHRNGRTARAMRRGFALLMCAPDERRVVRALMRGLGREEEELAEMPVELYMLDKLKA 618
Query: 1297 RIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDE 1334
R+ LA+ I+ L+ K KK R + +WL++AA+ M+I +D +
Sbjct: 619 RVQLAREIDRLQHKAKKERHERSWLKEAAEAMEIELDSD 657
Score = 53.5 bits (127), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 57/120 (47%), Gaps = 47/120 (39%)
Query: 1356 ALILAPTRELAIQVQNHI--------LDA------------------------------- 1376
AL+LAPTRELA+QV +H+ +DA
Sbjct: 212 ALVLAPTRELALQVSSHLNACLSSMDVDAVENKTGDDEVSKKGKNKGKAKAKAKAAETPA 271
Query: 1377 ----GKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGALS--LKRID-LAKSIEYL 1428
K+ P V VA VVGGMS +KQ RI+++ +LVATPG L L+ D LA IE+L
Sbjct: 272 LENKPKHPPLVSVAAVVGGMSAQKQRRIISRGVDVLVATPGRLWDILQEDDELATQIEFL 331
>gi|342320500|gb|EGU12440.1| ATP-dependent RNA helicase MAK5 [Rhodotorula glutinis ATCC 204091]
Length = 871
Score = 335 bits (859), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 208/564 (36%), Positives = 296/564 (52%), Gaps = 102/564 (18%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVM---------------------P 800
D+ ++ W + + RAL + F PT+IQ +
Sbjct: 214 DVEAELPAWSHIPLANPLYRALAELKFTKPTEIQEKALLVGEDAKAQAEGEEEQEKSAFD 273
Query: 801 SALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 859
+A R+ D+VG A+TGSGKTLA+G+PIL+ I+++
Sbjct: 274 TAPAGREHDVVGIAQTGSGKTLAYGLPILSHILSQ-----------------PSPSSSPS 316
Query: 860 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL--------------DAGKYTP- 904
+ +S + TR L ALIL PTRELA+QV+ + + K P
Sbjct: 317 DSDSDADEPSLPSTR--LAALILCPTRELALQVRTSLSSLSVRSLPLRTPSPETEKVAPE 374
Query: 905 ----------VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
V+V + GGMS EKQ R L + I+VATPGRLW+ I + E+ I
Sbjct: 375 DPRKRKQGRLVQVVALTGGMSVEKQKRQLERGADIVVATPGRLWDLIGESDMLVQEIKNI 434
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQP------------------------- 989
+LVIDE DRMIE+GHF EL++I+ R+T E + P
Sbjct: 435 KFLVIDEADRMIENGHFAELESIV-RLTRREQATPDDGFVDDFDSAVASRTNVTTLPCRP 493
Query: 990 -RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG------DPSIKRLQDLLNIKSPKIVD 1042
+TFVFSAT++ L+ LNLK+ K V K P+I+D
Sbjct: 494 DMRTFVFSATMSKELQ--LNLKRKGGPKKFVPKAVEGEMTSLDDLLELLDFRDPDPEIID 551
Query: 1043 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 1102
L+ + G+ +TL E K+ C +EKD YLY+F+L++PGRT+VF +I ++RL +LT+LK
Sbjct: 552 LSPEHGLVETLKECKVECLANEKDMYLYHFLLRYPGRTIVFLAAIDGIRRLHPVLTLLKV 611
Query: 1103 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162
+ +PLH+ M QRQRLK LD+F+ +++LLATDVAARGLDIP + HV+HY +PR ++ Y+
Sbjct: 612 NVIPLHSGMQQRQRLKALDKFKSSPDAVLLATDVAARGLDIPSVSHVVHYQLPRAADTYV 671
Query: 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
HRSGRTARA EGL L L+ +E + + SL K +DLP P D S+L +KKRIDLA
Sbjct: 672 HRSGRTARAGTEGLALQLVAPEEKKVQRMLMASLGKDIDLPTLPTDFSILDQLKKRIDLA 731
Query: 1223 KSIEYLESK-IKKNRPDNWLHRSG 1245
K I+ + + K+ D WL +
Sbjct: 732 KEIDQAQHRATKQAHEDKWLREAA 755
Score = 269 bits (688), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 189/561 (33%), Positives = 267/561 (47%), Gaps = 133/561 (23%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVM---------------------P 183
D+ ++ W + + RAL + F PT+IQ +
Sbjct: 214 DVEAELPAWSHIPLANPLYRALAELKFTKPTEIQEKALLVGEDAKAQAEGEEEQEKSAFD 273
Query: 184 SALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 242
+A R+ D+VG A+TGSGKTLA+G+PIL+ I+++
Sbjct: 274 TAPAGREHDVVGIAQTGSGKTLAYGLPILSHILSQ-----------------PSPSSSPS 316
Query: 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL--------------DAGKYTP- 287
+ +S + TR L ALIL PTRELA+QV+ + + K P
Sbjct: 317 DSDSDADEPSLPSTR--LAALILCPTRELALQVRTSLSSLSVRSLPLRTPSPETEKVAPE 374
Query: 288 ----------VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
V+V + GGMS EKQ R L + I+VATPGRLW+ I + E+ I
Sbjct: 375 DPRKRKQGRLVQVVALTGGMSVEKQKRQLERGADIVVATPGRLWDLIGESDMLVQEIKNI 434
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
+LVIDE DRMIE+GHF EL++I+ R+T E + P ++ F VT
Sbjct: 435 KFLVIDEADRMIENGHFAELESIV-RLTRREQATPDDGFVDD--FDSAVASRTNVTTLPC 491
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG------DPSIKRLQDLLNIKSPKI 451
+TFVFSAT++ L+ LNLK+ K V K P+I
Sbjct: 492 RPDMRTFVFSATMSKELQ--LNLKRKGGPKKFVPKAVEGEMTSLDDLLELLDFRDPDPEI 549
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
+DL+ + G+ +TL E K+ C +EKD YLY+F+L++PGRT IV L
Sbjct: 550 IDLSPEHGLVETLKECKVECLANEKDMYLYHFLLRYPGRT---------------IVFLA 594
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
GI + HP +LT+LK +
Sbjct: 595 AIDGIRRL-----------------------HP------------------VLTLLKVNV 613
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH+ M QRQRLK LD+F+ +++LLATDVAARGLDIP + HV+HY +PR ++ Y+HR
Sbjct: 614 IPLHSGMQQRQRLKALDKFKSSPDAVLLATDVAARGLDIPSVSHVVHYQLPRAADTYVHR 673
Query: 632 SGRTARANNEGLTVVLIESDE 652
SGRTARA EGL + L+ +E
Sbjct: 674 SGRTARAGTEGLALQLVAPEE 694
Score = 82.4 bits (202), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA EGL L L+ +E + + SL K +DLP P D S+L +KKR
Sbjct: 668 DTYVHRSGRTARAGTEGLALQLVAPEEKKVQRMLMASLGKDIDLPTLPTDFSILDQLKKR 727
Query: 1298 IDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDI 1329
IDLAK I+ + + K+ D WL +AA+ M+I
Sbjct: 728 IDLAKEIDQAQHRATKQAHEDKWLREAAEAMEI 760
Score = 45.4 bits (106), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 40/84 (47%), Gaps = 25/84 (29%)
Query: 1356 ALILAPTRELAIQVQNHIL--------------DAGKYTP-----------VKVACVVGG 1390
ALIL PTRELA+QV+ + + K P V+V + GG
Sbjct: 334 ALILCPTRELALQVRTSLSSLSVRSLPLRTPSPETEKVAPEDPRKRKQGRLVQVVALTGG 393
Query: 1391 MSTEKQLRILNKCPHILVATPGAL 1414
MS EKQ R L + I+VATPG L
Sbjct: 394 MSVEKQKRQLERGADIVVATPGRL 417
>gi|412987724|emb|CCO20559.1| predicted protein [Bathycoccus prasinos]
Length = 951
Score = 333 bits (854), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 214/604 (35%), Positives = 304/604 (50%), Gaps = 137/604 (22%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+A W ++++ +++A+ + F +PT IQ V+ A+ R DIVGAAETGSGKTLAFG+P
Sbjct: 221 VAAWAQYDLHPLLLKAIRKLRFTSPTPIQEKVLHPAIKGRMDIVGAAETGSGKTLAFGLP 280
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL ++ ++ E + EE A+E E K + L ALI+ PTR
Sbjct: 281 ILQRLM-------QDKEEEKWYEEYADE-------------EKPGKGKKHLRALIVTPTR 320
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA+QV + D YT +++A +VGGMS +KQ R+L K P I+VATPGRLWE I+ G
Sbjct: 321 ELALQVAKMLADVAIYTGIQIAAIVGGMSKQKQERVLKKQPEIIVATPGRLWELIRDGDK 380
Query: 947 HLTELYKINYLVIDETDRMIESGHF-------------PELKNILDRVTMTETSQP---- 989
HLT L ++ +L +DE DRM+E GHF PE + I +T+ QP
Sbjct: 381 HLTSLERLTFLTLDEADRMVERGHFKELESVIKSIPEPPETRRIARSAKLTKRKQPMMAA 440
Query: 990 --------------------------------------RQTFVFSATLT--HSLKNSLNL 1009
RQTFVFSATLT +K L+
Sbjct: 441 TKVSNDSKTKKGEEEEENEEKNDEESEPAADNRIMARDRQTFVFSATLTVPDEVKYKLDR 500
Query: 1010 KKGQSKS-------KKVSKGDPSIKR----LQDLLNIKSPKIVDLTEKIG---------- 1048
KK Q+ S KK G ++ ++ ++ PK + T +G
Sbjct: 501 KKPQASSKKVNNGKKKDGGGSSGVENNNGDYENAYRLEPPKELASTNTMGNLMKMVPFYG 560
Query: 1049 ----------------------------ITKT------LTESKILCKHDEKDSYLYYFIL 1074
IT T + ES + C DE+D+ Y +
Sbjct: 561 RVKLCDVSDSVTKKKKDNNPDESSSKAMITSTTKVASKVHESALECTDDERDALTLYLLS 620
Query: 1075 QHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
H G+ ++VF N+ISS++RLT LL ++K + + LHA M QR RLK LDRF+ S L+A
Sbjct: 621 AHAGKPSIVFVNAISSLRRLTALLKLMKVNAVGLHAGMQQRARLKALDRFKGNKASALIA 680
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDI G+E V+HY VPR ++ Y+HR GRT RAN G+++ L+ E Y+ M
Sbjct: 681 TDVAARGLDIKGVELVVHYQVPRQADAYVHRCGRTGRANLSGVSVALVTPKERSRYLAML 740
Query: 1194 NSL--EKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARAN 1251
++ E+ LP FP+ E + KR+ LAK ++ + K +K R D + RTA A
Sbjct: 741 AAMGRERGFRLPPFPVAEETVREATKRVQLAKRLDAIVHKNEKKRADKAWKK--RTAEAM 798
Query: 1252 NEGL 1255
+ GL
Sbjct: 799 DLGL 802
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 199/551 (36%), Positives = 288/551 (52%), Gaps = 95/551 (17%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+A W ++++ +++A+ + F +PT IQ V+ A+ R DIVGAAETGSGKTLAFG+P
Sbjct: 221 VAAWAQYDLHPLLLKAIRKLRFTSPTPIQEKVLHPAIKGRMDIVGAAETGSGKTLAFGLP 280
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL ++ ++ E + EE A+E E K + L ALI+ PTR
Sbjct: 281 ILQRLM-------QDKEEEKWYEEYADE-------------EKPGKGKKHLRALIVTPTR 320
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA+QV + D YT +++A +VGGMS +KQ R+L K P I+VATPGRLWE I+ G
Sbjct: 321 ELALQVAKMLADVAIYTGIQIAAIVGGMSKQKQERVLKKQPEIIVATPGRLWELIRDGDK 380
Query: 330 HLTELYKINYLVIDETDRMIESGHF-------------PELKNILDRVTMTETSQPRQTM 376
HLT L ++ +L +DE DRM+E GHF PE + I +T+ QP
Sbjct: 381 HLTSLERLTFLTLDEADRMVERGHFKELESVIKSIPEPPETRRIARSAKLTKRKQPMMAA 440
Query: 377 IESGHFPELKN-----------------ILDRVTMTETSQPRQTFVFSATLT--HSLKNS 417
+ + + K D M ++ RQTFVFSATLT +K
Sbjct: 441 TKVSNDSKTKKGEEEEENEEKNDEESEPAADNRIM---ARDRQTFVFSATLTVPDEVKYK 497
Query: 418 LNLKKGQSKSKKVSKG-----------DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466
L+ KK Q+ SKKV+ G + + ++ ++ PK + T +G +
Sbjct: 498 LDRKKPQASSKKVNNGKKKDGGGSSGVENNNGDYENAYRLEPPKELASTNTMGNLMKMVP 557
Query: 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK--------SPKIVDLTEKIGITK 518
+Y GR ++ D + K S +T +
Sbjct: 558 --------------FY------GRVKLCDVSDSVTKKKKDNNPDESSSKAMITSTTKVAS 597
Query: 519 TLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+ ES + C DE+D+ Y + H G+ ++VF N+ISS++RLT LL ++K + + LHA
Sbjct: 598 KVHESALECTDDERDALTLYLLSAHAGKPSIVFVNAISSLRRLTALLKLMKVNAVGLHAG 657
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
M QR RLK LDRF+ S L+ATDVAARGLDI G+E V+HY VPR ++ Y+HR GRT R
Sbjct: 658 MQQRARLKALDRFKGNKASALIATDVAARGLDIKGVELVVHYQVPRQADAYVHRCGRTGR 717
Query: 638 ANNEGLTVVLI 648
AN G++V L+
Sbjct: 718 ANLSGVSVALV 728
Score = 74.7 bits (182), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV + D YT +++A +VGGMS +KQ R+L K P I+VATPG L
Sbjct: 313 ALIVTPTRELALQVAKMLADVAIYTGIQIAAIVGGMSKQKQERVLKKQPEIIVATPGRL 371
>gi|441666446|ref|XP_004093167.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX24
[Nomascus leucogenys]
Length = 857
Score = 333 bits (853), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 195/459 (42%), Positives = 277/459 (60%), Gaps = 37/459 (8%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS D A +G T++ +L G + E P+
Sbjct: 300 TVIESEALPS------DTAAEARAKTGGTIS-DQALLFGDDDAGEGPSSLIREKPVPKQN 352
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E + +E+ + +EL+++S + K+ L L+L PTRELA+QV+ HI
Sbjct: 353 ENEEKNLDKEQTGNLKQELDDKSTTCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 409
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ V+
Sbjct: 410 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRXXVV- 468
Query: 961 ETDRMIESGHFPELKNIL-DRVTMTETSQPRQTF-----VFSATLT--HSLKNSLNLKKG 1012
++ S P LK D V +S R FSATLT H + KK
Sbjct: 469 ----LLFSPSLPFLKXASGDMVWAMPSSHRRMPCSNVVEFFSATLTLVHQAPARILHKKH 524
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
K K +K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF
Sbjct: 525 TKKMDKTAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYF 581
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LL
Sbjct: 582 LMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLL 641
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K+
Sbjct: 642 ATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKI 701
Query: 1193 FNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ +L+K D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 702 YKTLKKDEDIPLFPVQTKYMDVVKERIRLARQIEKSEYR 740
Score = 209 bits (533), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 121/149 (81%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL
Sbjct: 547 PKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLL 606
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 607 KVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 666
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
SEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 667 SEIYVHRSGRTARATNEGLSLMLIGPEDV 695
Score = 152 bits (385), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/331 (33%), Positives = 166/331 (50%), Gaps = 53/331 (16%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS D A +G T++ +L G + E P+
Sbjct: 300 TVIESEALPS------DTAAEARAKTGGTIS-DQALLFGDDDAGEGPSSLIREKPVPKQN 352
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E + +E+ + +EL+++S + K+ L L+L PTRELA+QV+ HI
Sbjct: 353 ENEEKNLDKEQTGNLKQELDDKSTTCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 409
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ V+
Sbjct: 410 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRXXVV- 468
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
++ S P LK + S R+ N+++
Sbjct: 469 ----LLFSPSLPFLKXASGDMVWAMPSSHRRM--------PCSNVVE------------- 503
Query: 404 FVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
FSATLT H + KK K K +K D +Q + PK++DLT
Sbjct: 504 -FFSATLTLVHQAPARILHKKHTKKMDKTAKLD---LLMQKIGMRGKPKVIDLTRNEATV 559
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
+TLTE+KI C+ DEKD YLYYF++Q+PGR+L
Sbjct: 560 ETLTETKIHCETDEKDFYLYYFLMQYPGRSL 590
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 670 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 729
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 730 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 765
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 388 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 446
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 112 EPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGF 171
EPS + KK +T+ +LEV D ++ W +P ++RAL GF
Sbjct: 162 EPSQSTAAKVPKKAKTW------ILEV-----RDQKADVSAWKDLFVPRPVLRALSFLGF 210
Query: 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV-----------NKLEN 220
PT IQ++ + A+ + DI+GAAETGSGKTLAF IP++ ++ + E
Sbjct: 211 SAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPVIHAVLQWQKRNAAPPPSNTEA 270
Query: 221 PTEEDENDSGLE 232
P E ++G E
Sbjct: 271 PPGETRTEAGAE 282
Score = 70.5 bits (171), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 22/132 (16%)
Query: 729 EPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGF 788
EP + KK +T+ +LEV D ++ W +P ++RAL GF
Sbjct: 162 EPSQSTAAKVPKKAKTW------ILEV-----RDQKADVSAWKDLFVPRPVLRALSFLGF 210
Query: 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV-----------NKLEN 837
PT IQ++ + A+ + DI+GAAETGSGKTLAF IP++ ++ + E
Sbjct: 211 SAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPVIHAVLQWQKRNAAPPPSNTEA 270
Query: 838 PTEEDENDSGLE 849
P E ++G E
Sbjct: 271 PPGETRTEAGAE 282
>gi|71003417|ref|XP_756389.1| hypothetical protein UM00242.1 [Ustilago maydis 521]
gi|46095767|gb|EAK81000.1| hypothetical protein UM00242.1 [Ustilago maydis 521]
Length = 957
Score = 331 bits (848), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 211/592 (35%), Positives = 309/592 (52%), Gaps = 130/592 (21%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL---------- 803
E D + +D + W + + RAL KGFK PT+IQ +P AL
Sbjct: 229 EADEAEFDDKL--LPAWSHLALHSDLKRALLHKGFKQPTEIQRKAIPFALGLQQEATSSD 286
Query: 804 ----------------LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
++D+VG ++TGSGKTLA+G+PIL + EN
Sbjct: 287 DSEDTADSAAIGAPSTRRKRDVVGVSQTGSGKTLAYGLPILNYLFENAENAIA------- 339
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV-- 905
S+ V L ALIL PTRELA+QV +H++D + + +
Sbjct: 340 ---------------SSCRRNAVDDLPPPLGALILCPTRELALQVSSHLIDLVRASCIVS 384
Query: 906 ------------------KVACVVGGMSTEKQLRILNKCPH---------ILVATPGRLW 938
++A V GGMS +KQ R+L I+VATPGRLW
Sbjct: 385 DIDVDQPEISHRKLLRRPQIAVVCGGMSEQKQRRLLEGRSRQGDRKAGVDIIVATPGRLW 444
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR-------- 990
E +L + + +LV+DE DRM+E GHF E+++IL+ V +E +P
Sbjct: 445 EMTRLDDHLAARIKQTRFLVLDEADRMVEVGHFAEMEHILNLVNRSEAKRPSEGQDGQQH 504
Query: 991 -------------------------QTFVFSATLTHSLKNSLNLKK----GQSKSKKVSK 1021
QTF+FSATL+ +L+ +NLK+ Q K+ SK
Sbjct: 505 VSGSDKEDESEVEIPTHGVKPSSSMQTFIFSATLSKALQ--VNLKRRRKLKQFAKKRHSK 562
Query: 1022 GDPSIKRLQDLLNI-----KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
+ L +L++ ++P ++DLT G+ + L E+KI C +KD YLYYF+L++
Sbjct: 563 RKENATTLDELMDRIDFRDQAPAVIDLTPAQGLPQGLMETKIECVGKDKDLYLYYFLLRY 622
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR------DQNNSI 1130
PGRTLVF NSI ++RLT LLT L P+H+ + Q+QRLKNLDRFR +N +
Sbjct: 623 PGRTLVFVNSIDGIRRLTPLLTQLNVMCYPIHSQLQQKQRLKNLDRFRAFERCGQASNCV 682
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVAARGLDIP +EHV+HY +PR+++ Y+HRSGRTARA + G++L LIE+ E L+
Sbjct: 683 LLATDVAARGLDIPSVEHVVHYQLPRSADTYVHRSGRTARAGSSGVSLALIEAKEKQLWT 742
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKI-KKNRPDNWL 1241
++ ++ ++ D+ PI S LSL+++R++LA +I+ + K+ DNWL
Sbjct: 743 QLCRAMSRQSDISSLPITFSTLSLLRERVELALAIDKQTHEANKQQHDDNWL 794
Score = 272 bits (696), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 206/654 (31%), Positives = 308/654 (47%), Gaps = 150/654 (22%)
Query: 83 PSQVEVSELSANTNDPDDQVNKTEEIQSD--------EPSSKKLKQKKKKKQTYTSANKE 134
P+ +E EL+A T D D+ + E +D S + + +A++
Sbjct: 164 PAPMESQELTAVTKDSDEPDSDGYETAADVTLLPQEDTADSDLDLDDNDLAEAFRNAHQL 223
Query: 135 LLEVDTSNNEDMFVQM-AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL------- 186
L+ D ++ + ++ W + + RAL KGFK PT+IQ +P AL
Sbjct: 224 DLQDDEADEAEFDDKLLPAWSHLALHSDLKRALLHKGFKQPTEIQRKAIPFALGLQQEAT 283
Query: 187 -------------------LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227
++D+VG ++TGSGKTLA+G+PIL + EN
Sbjct: 284 SSDDSEDTADSAAIGAPSTRRKRDVVGVSQTGSGKTLAYGLPILNYLFENAENAIA---- 339
Query: 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 287
S+ V L ALIL PTRELA+QV +H++D + +
Sbjct: 340 ------------------SSCRRNAVDDLPPPLGALILCPTRELALQVSSHLIDLVRASC 381
Query: 288 V--------------------KVACVVGGMSTEKQLRILNKCPH---------ILVATPG 318
+ ++A V GGMS +KQ R+L I+VATPG
Sbjct: 382 IVSDIDVDQPEISHRKLLRRPQIAVVCGGMSEQKQRRLLEGRSRQGDRKAGVDIIVATPG 441
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RLWE +L + + +LV+DE DRM+E G
Sbjct: 442 RLWEMTRLDDHLAARIKQTRFLVLDEADRMVEVG-------------------------- 475
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
HF E+++IL+ V +E +P + GQ + VS D K
Sbjct: 476 --HFAEMEHILNLVNRSEAKRPSE--------------------GQDGQQHVSGSD---K 510
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPGR----TLC 493
+ + I + + + + T SK L + ++ L F +H R T
Sbjct: 511 EDESEVEIPTHGVKPSSSMQTFIFSATLSKALQVNLKRRRKLKQFAKKRHSKRKENATTL 570
Query: 494 EEIQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 551
+E+ D ++ + +P ++DLT G+ + L E+KI C +KD YLYYF+L++PGRTLVF
Sbjct: 571 DELMDRIDFRDQAPAVIDLTPAQGLPQGLMETKIECVGKDKDLYLYYFLLRYPGRTLVFV 630
Query: 552 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR------DQNNSILLATDVAA 605
NSI ++RLT LLT L P+H+ + Q+QRLKNLDRFR +N +LLATDVAA
Sbjct: 631 NSIDGIRRLTPLLTQLNVMCYPIHSQLQQKQRLKNLDRFRAFERCGQASNCVLLATDVAA 690
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659
RGLDIP +EHV+HY +PR+++ Y+HRSGRTARA + G+++ LIE+ E L T+
Sbjct: 691 RGLDIPSVEHVVHYQLPRSADTYVHRSGRTARAGSSGVSLALIEAKEKQLWTQL 744
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA + G++L LIE+ E L+ ++ ++ ++ D+ PI S LSL+++R
Sbjct: 711 DTYVHRSGRTARAGSSGVSLALIEAKEKQLWTQLCRAMSRQSDISSLPITFSTLSLLRER 770
Query: 1298 IDLAKSIEYLESKI-KKNRPDNWLEKAAKDMDIIIDDENLIQPN 1340
++LA +I+ + K+ DNWL K A+D D+++ D++ + P+
Sbjct: 771 VELALAIDKQTHEANKQQHDDNWLAKLAEDADLVMSDDDNVDPD 814
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 35/111 (31%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPV--------------------KVACVVGGMSTEK 1395
ALIL PTRELA+QV +H++D + + + ++A V GGMS +K
Sbjct: 356 ALILCPTRELALQVSSHLIDLVRASCIVSDIDVDQPEISHRKLLRRPQIAVVCGGMSEQK 415
Query: 1396 QLRILNKCPH---------ILVATPGAL-SLKRIDLAKSIEYLESKIKKNR 1436
Q R+L I+VATPG L + R+D ++L ++IK+ R
Sbjct: 416 QRRLLEGRSRQGDRKAGVDIIVATPGRLWEMTRLD-----DHLAARIKQTR 461
>gi|134117550|ref|XP_772546.1| hypothetical protein CNBL0260 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818273|sp|P0CQ91.1|MAK5_CRYNB RecName: Full=ATP-dependent RNA helicase MAK5
gi|50255161|gb|EAL17899.1| hypothetical protein CNBL0260 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 772
Score = 331 bits (848), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 209/528 (39%), Positives = 306/528 (57%), Gaps = 77/528 (14%)
Query: 753 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 812
L+ + + N+D+ + EW ++ ++ R+ F PT IQS +P+ + R D+VG
Sbjct: 160 LDDEPAFNDDL---LPEWSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGR-DVVGV 215
Query: 813 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872
AETGSGKTLA+ +PIL ++ + ++ +G+
Sbjct: 216 AETGSGKTLAYSLPILHYLLG-------QRKSKAGI------------------------ 244
Query: 873 TRNKLYALILAPTRELAIQVQNHI---LDAGKYTP----------VKVACVVGGMSTEKQ 919
+ L AL+L PTRELA+QV +H+ L TP V V VVGG+S +KQ
Sbjct: 245 -KRPLSALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQ 303
Query: 920 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL- 978
RIL + ++VATPGRLW+ I+ T + + +LVIDE DRMIE+GHF EL++I+
Sbjct: 304 KRILERGCDVIVATPGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGHFAELESIVK 363
Query: 979 --------------DRV-----TMTETSQPR---QTFVFSATLTHSLKNSLNLKKGQSKS 1016
D V T+ E S R QTFVFSATL+ L+ NLK+
Sbjct: 364 LTQRSTAQQGPDDDDPVFQAMATLFEESTAREDMQTFVFSATLSKDLQK--NLKRRSRSW 421
Query: 1017 KKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K +++ L + L+ + +P+++DL+ + G+ +L ES I D+KD YLYYF+L
Sbjct: 422 KGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGVVSSLRESMIESTKDDKDLYLYYFLL 481
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
++PGR++VF NSI S++RL LLT+L+ PLH+ + Q+QRLKNLDRF+ IL+AT
Sbjct: 482 RYPGRSIVFVNSIDSIRRLLPLLTLLQLPVFPLHSHLQQKQRLKNLDRFKSNPKGILIAT 541
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDIP ++HV+H+++PRT++ YIHRSGRTARA NEG L L+ DE + +
Sbjct: 542 DVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRTARAQNEGFALQLVSPDEKSVQRALMK 601
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
SLE+ +LPD PI+ L +++R+ +A IE + + K D NWL
Sbjct: 602 SLERTHELPDLPIEAGFLPSLRERLRVATEIEKAQHRATKATHDKNWL 649
Score = 290 bits (743), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 199/531 (37%), Positives = 291/531 (54%), Gaps = 112/531 (21%)
Query: 136 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 195
L+ + + N+D+ + EW ++ ++ R+ F PT IQS +P+ + R D+VG
Sbjct: 160 LDDEPAFNDDL---LPEWSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGR-DVVGV 215
Query: 196 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 255
AETGSGKTLA+ +PIL ++ + ++ +G+
Sbjct: 216 AETGSGKTLAYSLPILHYLLG-------QRKSKAGI------------------------ 244
Query: 256 TRNKLYALILAPTRELAIQVQNHI---LDAGKYTP----------VKVACVVGGMSTEKQ 302
+ L AL+L PTRELA+QV +H+ L TP V V VVGG+S +KQ
Sbjct: 245 -KRPLSALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQ 303
Query: 303 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 362
RIL + ++VATPGRLW+ I+ T + + +LVIDE DRMIE+GHF EL++I
Sbjct: 304 KRILERGCDVIVATPGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGHFAELESI-- 361
Query: 363 RVTMTETSQPRQTMIESGH-FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLK 421
V +T+ S +Q + F + + + T E QTFVFSATL+ L+ NLK
Sbjct: 362 -VKLTQRSTAQQGPDDDDPVFQAMATLFEESTARED---MQTFVFSATLSKDLQK--NLK 415
Query: 422 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 481
+ +S+S K KG +S + DL EK+ D +D
Sbjct: 416 R-RSRSWK-GKGK------------RSSTLEDLVEKL---------------DFRD---- 442
Query: 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 541
++P+++DL+ + G+ +L ES I D+KD YLYYF+L
Sbjct: 443 ---------------------ENPEVIDLSPEGGVVSSLRESMIESTKDDKDLYLYYFLL 481
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
++PGR++VF NSI S++RL LLT+L+ PLH+ + Q+QRLKNLDRF+ IL+AT
Sbjct: 482 RYPGRSIVFVNSIDSIRRLLPLLTLLQLPVFPLHSHLQQKQRLKNLDRFKSNPKGILIAT 541
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DVAARGLDIP ++HV+H+++PRT++ YIHRSGRTARA NEG + L+ DE
Sbjct: 542 DVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRTARAQNEGFALQLVSPDE 592
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA NEG L L+ DE + + SLE+ +LPD PI+ L +++R
Sbjct: 566 DAYIHRSGRTARAQNEGFALQLVSPDEKSVQRALMKSLERTHELPDLPIEAGFLPSLRER 625
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIID 1332
+ +A IE + + K D NWL +AA+ MDI ID
Sbjct: 626 LRVATEIEKAQHRATKATHDKNWLLEAAEAMDIDID 661
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 17/94 (18%)
Query: 1356 ALILAPTRELAIQVQNHI---LDAGKYTP----------VKVACVVGGMSTEKQLRILNK 1402
AL+L PTRELA+QV +H+ L TP V V VVGG+S +KQ RIL +
Sbjct: 250 ALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQKRILER 309
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIKKNR 1436
++VATPG L DL K+ + L + ++ R
Sbjct: 310 GCDVIVATPGRL----WDLIKADDELATSVRTLR 339
>gi|339238663|ref|XP_003380886.1| ATP-dependent RNA helicase DDX24 [Trichinella spiralis]
gi|316976157|gb|EFV59493.1| ATP-dependent RNA helicase DDX24 [Trichinella spiralis]
Length = 654
Score = 331 bits (848), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 187/487 (38%), Positives = 283/487 (58%), Gaps = 57/487 (11%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
++ +W + +PE I+ AL + PT IQ++ +P A+ R DI+GAAETGSGKTLAFGI
Sbjct: 92 KLKKWQELFVPEEILHALDDLEYFEPTPIQALCLPPAIRDRLDILGAAETGSGKTLAFGI 151
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
P++ G+++ + +DS + A LIL PT
Sbjct: 152 PVIAGLLS--------ENSDSQIHPSA---------------------------LILTPT 176
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
RELAIQ+++H+ KYT +K+ GG+S +KQ R+L P I++ATPGRLW I
Sbjct: 177 RELAIQIKDHLSSIMKYTNLKLTTATGGLSVQKQQRLLKDDPDIVIATPGRLWALISEDC 236
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS-QPRQTFVFSATLT--HS 1002
L L+KI YLVIDE DRM E +F E +L+ + E + + RQT VFSATL+ H
Sbjct: 237 EGLENLHKIKYLVIDEIDRMAEKQNFAEFSQLLEFLNGDENAIRKRQTLVFSATLSFVHP 296
Query: 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP-KIVDLTEKIGITKTLTESKILCK 1061
+ N L L K +K + I+ L L+++ K++DL+ K G++ +L ES + C
Sbjct: 297 MPNRL-LSKANAKP---LSPEEKIENLISFLSMRPKRKVIDLSSKHGLSSSLVESCLFCS 352
Query: 1062 HDE-KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
E KD+ LYYF+ +PGRTL+F NS++ V+RL LL++LK + +
Sbjct: 353 TLEMKDTSLYYFLRHYPGRTLIFANSVNCVRRLKNLLSLLKFKKYLI------------V 400
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ D +N++L+ATDVAARGLDI ++HV+HY VPRT+E YIHRSGRTAR N GL+L+L
Sbjct: 401 IKLSDNDNTVLVATDVAARGLDIKNVQHVVHYQVPRTAETYIHRSGRTARLNQRGLSLML 460
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-N 1239
++ ++ + ++ +L++ DLP FP+D ++ K + + +E LE + K + N
Sbjct: 461 VDKQDVNNFRRVCKTLKRGKDLPVFPVDFELMKFYSKLVRITSELESLEHRRKGVSAEKN 520
Query: 1240 WLHRSGR 1246
W ++ +
Sbjct: 521 WFQKAAK 527
Score = 282 bits (721), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 191/560 (34%), Positives = 275/560 (49%), Gaps = 143/560 (25%)
Query: 104 KTEEIQSDEPSSKKLKQKKKKKQTY-----TSANKELLEVDTSNNEDMFV--QMAEWVKF 156
K+ I + +SKK K K K+ + S K LE S +E+ ++ +W +
Sbjct: 40 KSTTINDKKNTSKKRKLKNKQSRAIIDKQEASGKKSKLESFESVDENYVPGKKLKKWQEL 99
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+PE I+ AL + PT IQ++ +P A+ R DI+GAAETGSGKTLAFGIP++ G+++
Sbjct: 100 FVPEEILHALDDLEYFEPTPIQALCLPPAIRDRLDILGAAETGSGKTLAFGIPVIAGLLS 159
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
+ +DS + A LIL PTRELAIQ++
Sbjct: 160 --------ENSDSQIHPSA---------------------------LILTPTRELAIQIK 184
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
+H+ KYT +K+ GG+S +KQ R+L P I++ATPGRLW I L L+K
Sbjct: 185 DHLSSIMKYTNLKLTTATGGLSVQKQQRLLKDDPDIVIATPGRLWALISEDCEGLENLHK 244
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396
I YLVIDE DRM E +F E +L+ + E +
Sbjct: 245 IKYLVIDEIDRMAEKQNFAEFSQLLEFLNGDENA-------------------------- 278
Query: 397 TSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
+ RQT VFSATL+ H + N L L K +K SP
Sbjct: 279 -IRKRQTLVFSATLSFVHPMPNRL-LSKANAKPL-------------------SP----- 312
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+EK L F+ P R K++DL+ K
Sbjct: 313 -------------------EEKIENLISFLSMRPKR---------------KVIDLSSKH 338
Query: 515 GITKTLTESKILCKHDE-KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 573
G++ +L ES + C E KD+ LYYF+ +PGRTL+F NS++ V+RL LL++LK
Sbjct: 339 GLSSSLVESCLFCSTLEMKDTSLYYFLRHYPGRTLIFANSVNCVRRLKNLLSLLKFKKYL 398
Query: 574 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 633
+ + + D +N++L+ATDVAARGLDI ++HV+HY VPRT+E YIHRSG
Sbjct: 399 I------------VIKLSDNDNTVLVATDVAARGLDIKNVQHVVHYQVPRTAETYIHRSG 446
Query: 634 RTARANNEGLTVVLIESDEI 653
RTAR N GL+++L++ ++
Sbjct: 447 RTARLNQRGLSLMLVDKQDV 466
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 75/123 (60%), Gaps = 4/123 (3%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+ ++HRSGRTAR N GL+L+L++ ++ + ++ +L++ DLP FP+D ++ K
Sbjct: 439 ETYIHRSGRTARLNQRGLSLMLVDKQDVNNFRRVCKTLKRGKDLPVFPVDFELMKFYSKL 498
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDENLIQPNQLLIFE--SRNLRYSW 1354
+ + +E LE + K + NW +KAAK+ DII+ DE+++Q + + E RN++
Sbjct: 499 VRITSELESLEHRRKGVSAEKNWFQKAAKETDIIL-DEDVLQNDAYALREENERNVKSRI 557
Query: 1355 DAL 1357
D L
Sbjct: 558 DHL 560
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELAIQ+++H+ KYT +K+ GG+S +KQ R+L P I++ATPG L
Sbjct: 170 ALILTPTRELAIQIKDHLSSIMKYTNLKLTTATGGLSVQKQQRLLKDDPDIVIATPGRL 228
>gi|58270130|ref|XP_572221.1| ATP dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|338818274|sp|P0CQ90.1|MAK5_CRYNJ RecName: Full=ATP-dependent RNA helicase MAK5
gi|57228479|gb|AAW44914.1| ATP dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 772
Score = 330 bits (847), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 208/528 (39%), Positives = 305/528 (57%), Gaps = 77/528 (14%)
Query: 753 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 812
L+ + + N+D+ + EW ++ ++ R+ F PT IQS +P+ + R D+VG
Sbjct: 160 LDDEPAFNDDL---LPEWSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGR-DVVGV 215
Query: 813 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872
AETGSGKTLA+ +PIL ++ + ++ +G+
Sbjct: 216 AETGSGKTLAYSLPILHYLLG-------QRKSKAGI------------------------ 244
Query: 873 TRNKLYALILAPTRELAIQVQNHI---LDAGKYTP----------VKVACVVGGMSTEKQ 919
+ L AL+L PTRELA+QV +H+ L TP V V VVGG+S +KQ
Sbjct: 245 -KRPLSALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQ 303
Query: 920 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL- 978
RIL + ++VATPGRLW+ I+ T + + +LVIDE DRMIE+GHF EL++I+
Sbjct: 304 KRILERGCDVIVATPGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGHFAELESIVK 363
Query: 979 --------------DRV-----TMTETSQPR---QTFVFSATLTHSLKNSLNLKKGQSKS 1016
D V T+ E S R QTFVFSATL+ L+ NLK+
Sbjct: 364 LTQRSTAQQGPDDDDPVFQAMATLFEESTAREDMQTFVFSATLSKDLQK--NLKRRSRSW 421
Query: 1017 KKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K +++ L + L+ + +P+++DL+ + G+ +L ES I D+KD YLYYF+L
Sbjct: 422 KGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGVVSSLRESMIESTKDDKDLYLYYFLL 481
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
++PGR++VF NSI S++RL L T+L+ PLH+ + Q+QRLKNLDRF+ IL+AT
Sbjct: 482 RYPGRSIVFVNSIDSIRRLLPLFTLLQLPVFPLHSHLQQKQRLKNLDRFKSNPKGILIAT 541
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDIP ++HV+H+++PRT++ YIHRSGRTARA NEG L L+ DE + +
Sbjct: 542 DVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRTARAQNEGFALQLVSPDEKSVQRALMK 601
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
SLE+ +LPD PI+ L +++R+ +A IE + + K D NWL
Sbjct: 602 SLERTHELPDLPIEAGFLPSLRERLRVATEIEKAQHRATKATHDKNWL 649
Score = 290 bits (742), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 198/531 (37%), Positives = 290/531 (54%), Gaps = 112/531 (21%)
Query: 136 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 195
L+ + + N+D+ + EW ++ ++ R+ F PT IQS +P+ + R D+VG
Sbjct: 160 LDDEPAFNDDL---LPEWSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGR-DVVGV 215
Query: 196 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 255
AETGSGKTLA+ +PIL ++ + ++ +G+
Sbjct: 216 AETGSGKTLAYSLPILHYLLG-------QRKSKAGI------------------------ 244
Query: 256 TRNKLYALILAPTRELAIQVQNHI---LDAGKYTP----------VKVACVVGGMSTEKQ 302
+ L AL+L PTRELA+QV +H+ L TP V V VVGG+S +KQ
Sbjct: 245 -KRPLSALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQ 303
Query: 303 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 362
RIL + ++VATPGRLW+ I+ T + + +LVIDE DRMIE+GHF EL++I
Sbjct: 304 KRILERGCDVIVATPGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGHFAELESI-- 361
Query: 363 RVTMTETSQPRQTMIESGH-FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLK 421
V +T+ S +Q + F + + + T E QTFVFSATL+ L+ NLK
Sbjct: 362 -VKLTQRSTAQQGPDDDDPVFQAMATLFEESTARED---MQTFVFSATLSKDLQK--NLK 415
Query: 422 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 481
+ +S+S K KG +S + DL EK+ D +D
Sbjct: 416 R-RSRSWK-GKGK------------RSSTLEDLVEKL---------------DFRD---- 442
Query: 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 541
++P+++DL+ + G+ +L ES I D+KD YLYYF+L
Sbjct: 443 ---------------------ENPEVIDLSPEGGVVSSLRESMIESTKDDKDLYLYYFLL 481
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
++PGR++VF NSI S++RL L T+L+ PLH+ + Q+QRLKNLDRF+ IL+AT
Sbjct: 482 RYPGRSIVFVNSIDSIRRLLPLFTLLQLPVFPLHSHLQQKQRLKNLDRFKSNPKGILIAT 541
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DVAARGLDIP ++HV+H+++PRT++ YIHRSGRTARA NEG + L+ DE
Sbjct: 542 DVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRTARAQNEGFALQLVSPDE 592
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA NEG L L+ DE + + SLE+ +LPD PI+ L +++R
Sbjct: 566 DAYIHRSGRTARAQNEGFALQLVSPDEKSVQRALMKSLERTHELPDLPIEAGFLPSLRER 625
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIID 1332
+ +A IE + + K D NWL +AA+ MDI ID
Sbjct: 626 LRVATEIEKAQHRATKATHDKNWLLEAAEAMDIDID 661
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 17/94 (18%)
Query: 1356 ALILAPTRELAIQVQNHI---LDAGKYTP----------VKVACVVGGMSTEKQLRILNK 1402
AL+L PTRELA+QV +H+ L TP V V VVGG+S +KQ RIL +
Sbjct: 250 ALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQKRILER 309
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIKKNR 1436
++VATPG L DL K+ + L + ++ R
Sbjct: 310 GCDVIVATPGRL----WDLIKADDELATSVRTLR 339
>gi|19112899|ref|NP_596107.1| ATP-dependent RNA helicase Mak5 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74582436|sp|O74393.1|MAK5_SCHPO RecName: Full=ATP-dependent RNA helicase mak5
gi|3560140|emb|CAA20727.1| ATP-dependent RNA helicase Mak5 (predicted) [Schizosaccharomyces
pombe]
Length = 648
Score = 327 bits (838), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 196/532 (36%), Positives = 297/532 (55%), Gaps = 70/532 (13%)
Query: 733 KKLKQKKKKKQTYTSANKELLEVD---TSNNEDMF-------------VQMAEWVKFNIP 776
+K +KKKK TS E+ + TS N + F V ++ W F++
Sbjct: 71 QKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDVSAWAHFSLS 130
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
++ +L + GF P IQS+V+P A + DI+G A+TGSGKTLAFGIPIL
Sbjct: 131 PEMLGSLSKAGFSKPMPIQSLVIPEASIGF-DIIGKADTGSGKTLAFGIPIL-------- 181
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
E L ++ ++V+ AL++APTRELA Q+ H
Sbjct: 182 ----------------EHCLRNVD------AKYVQ-------ALVVAPTRELAHQICQH- 211
Query: 897 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ----LGHFHLTEL 951
+ K +P ++V + GG++ +KQ R+LNK PH++VATPGRLW I G+F
Sbjct: 212 FELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFK---- 267
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
KI LV+DE DR+++ HF EL +L+ + +Q RQTF+FSAT L+ LKK
Sbjct: 268 -KIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQ-RQTFIFSATFDEGLQQ--RLKK 323
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
+ P L+++ PK +D + + + E I C EKD YLYY
Sbjct: 324 NMKGNITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYY 383
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
I+++PG+T+VF N I +KR+T L LK PLHA ++Q++RL++L++F++ +L
Sbjct: 384 LIMRYPGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVL 443
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ TDVAARG+DIP + HVIHYHVP T+++Y+HRSGRTARAN +G+++++ E+ +
Sbjct: 444 VCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKR 503
Query: 1192 MFNSLEKKVD-LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWL 1241
+ L+KK++ +FP+D S+L ++K R+ LA I L K + R + WL
Sbjct: 504 LCYRLKKKIETFINFPVDMSILDILKTRVVLAHKIVNLTRKDGRVGREEAWL 555
Score = 278 bits (710), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 185/559 (33%), Positives = 274/559 (49%), Gaps = 152/559 (27%)
Query: 116 KKLKQKKKKKQTYTSANKELLEVD---TSNNEDMF-------------VQMAEWVKFNIP 159
+K +KKKK TS E+ + TS N + F V ++ W F++
Sbjct: 71 QKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDVSAWAHFSLS 130
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
++ +L + GF P IQS+V+P A + DI+G A+TGSGKTLAFGIPIL
Sbjct: 131 PEMLGSLSKAGFSKPMPIQSLVIPEASIGF-DIIGKADTGSGKTLAFGIPIL-------- 181
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
E L ++ ++V+ AL++APTRELA Q+ H
Sbjct: 182 ----------------EHCLRNVD------AKYVQ-------ALVVAPTRELAHQICQH- 211
Query: 280 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ----LGHFHLTEL 334
+ K +P ++V + GG++ +KQ R+LNK PH++VATPGRLW I G+F
Sbjct: 212 FELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFK---- 267
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
KI LV+DE DR+++ HF EL +L+ IL
Sbjct: 268 -KIKCLVLDEADRLLQKSHFEELSKLLE-------------------------ILGNPMH 301
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
T+ RQTF+FSAT L Q + KK KG+ +
Sbjct: 302 TQ----RQTFIFSATFDEGL---------QQRLKKNMKGN-------------------I 329
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
TEK P + +E++ PK +D +
Sbjct: 330 TEK---------------------------YNSPMENMLKEVR---FFGKPKFLDANPQS 359
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+ + E I C EKD YLYY I+++PG+T+VF N I +KR+T L LK PL
Sbjct: 360 AVASRVLEGLIECAPAEKDLYLYYLIMRYPGKTMVFANGIEDIKRITPFLNELKVPSYPL 419
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
HA ++Q++RL++L++F++ +L+ TDVAARG+DIP + HVIHYHVP T+++Y+HRSGR
Sbjct: 420 HAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGR 479
Query: 635 TARANNEGLTVVLIESDEI 653
TARAN +G+++++ E+
Sbjct: 480 TARANEDGVSILMCGPKEL 498
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKK 1296
D ++HRSGRTARAN +G+++++ E+ ++ L+KK++ +FP+D S+L ++K
Sbjct: 471 DMYVHRSGRTARANEDGVSILMCGPKELSQLKRLCYRLKKKIETFINFPVDMSILDILKT 530
Query: 1297 RIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDI-IIDDEN 1335
R+ LA I L K + R + WL+ A+++ + DDE+
Sbjct: 531 RVVLAHKIVNLTRKDGRVGREEAWLKSMAQELGVESSDDED 571
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA Q+ H + K +P ++V + GG++ +KQ R+LNK PH++VATPG L
Sbjct: 195 ALVVAPTRELAHQICQH-FELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRL 253
>gi|322710764|gb|EFZ02338.1| ATP dependent RNA helicase, putative [Metarhizium anisopliae ARSEF
23]
Length = 794
Score = 327 bits (838), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 211/555 (38%), Positives = 302/555 (54%), Gaps = 62/555 (11%)
Query: 726 QSDEPHSKKLKQ-----KKKKKQTYTSANKELLEVDTSNNEDM---FVQMAEWVKFNIPE 777
QSD KK KQ KK +K A E L + +E+ + M +WV N+
Sbjct: 163 QSDNGTQKKSKQQKIADKKLQKSASHGAGNEFLALAAMADEEAETDDLDMGDWVALNLSP 222
Query: 778 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 837
++ A+ + GF PT IQ +P ++A D++G A+TGSGKTLAFGIPI V K +
Sbjct: 223 NLVSAIAKLGFSKPTAIQEKSIPE-IIAGGDVIGKAQTGSGKTLAFGIPI----VEKWLD 277
Query: 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 897
EE E+ +G + + KK R A+IL+PTRELA Q+ +HI
Sbjct: 278 MHEEQEDQAGDDGDQPN----------------KKNREGPMAVILSPTRELAKQIGDHIK 321
Query: 898 DAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY-KI 954
P + V GG+S +KQ R L K I++ TPGRLWE + G L + + +I
Sbjct: 322 AVCDGLPASPYICVVTGGLSIQKQQRQLEKA-DIVIGTPGRLWEVLD-GDAKLQQQFTRI 379
Query: 955 NYLVIDETDRMIESGHFPELKNI---LDRVTMTET-----------SQPRQTFVFSATLT 1000
+LV+DE DR+ + G F E +NI LDR E ++ RQT VFSAT
Sbjct: 380 KFLVVDEADRLFKVGQFKEAENIIGALDRENPEENGYSDNSDAEDETRERQTLVFSATFD 439
Query: 1001 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKIL 1059
+L+ L G+ KS K + + L L + PK +D+ + L E I
Sbjct: 440 KNLQTKL---AGKGKSAKTGSDEEKMAYLMKCLKFRGEPKFIDVNPVSQMADNLREGLIE 496
Query: 1060 CKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
C EKD YLY +L +PGR TLVF NSIS+V+R+T LL L + LPLH+ M Q+ RL+
Sbjct: 497 CGAMEKDLYLYTVLLLNPGRRTLVFTNSISAVRRITPLLQHLNQNALPLHSQMIQKARLR 556
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
+L++F N+IL+ATDVAARGLDI ++ VIHYHVPR ++ Y+HRSGRTARA+ G+++
Sbjct: 557 SLEKFTAARNTILVATDVAARGLDIKEVDQVIHYHVPRAADTYVHRSGRTARADRSGVSI 616
Query: 1179 VLIESDEI--------PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI-EYLE 1229
+L DE+ ++ + +S +K+ + PID + S +K R+DLAK I + +
Sbjct: 617 ILCSPDEVLPTRRLASKVHAERASSGKKQHIIESLPIDRKIASRLKPRLDLAKKITDAIL 676
Query: 1230 SKIKKNRPDNWLHRS 1244
+K K + D WL +
Sbjct: 677 AKEKAHSNDAWLRNA 691
Score = 268 bits (685), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 188/560 (33%), Positives = 268/560 (47%), Gaps = 113/560 (20%)
Query: 109 QSDEPSSKKLKQ-----KKKKKQTYTSANKELLEVDTSNNEDM---FVQMAEWVKFNIPE 160
QSD + KK KQ KK +K A E L + +E+ + M +WV N+
Sbjct: 163 QSDNGTQKKSKQQKIADKKLQKSASHGAGNEFLALAAMADEEAETDDLDMGDWVALNLSP 222
Query: 161 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 220
++ A+ + GF PT IQ +P ++A D++G A+TGSGKTLAFGIP IV K +
Sbjct: 223 NLVSAIAKLGFSKPTAIQEKSIPE-IIAGGDVIGKAQTGSGKTLAFGIP----IVEKWLD 277
Query: 221 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 280
EE E+ +G + + KK R A+IL+PTRELA Q+ +HI
Sbjct: 278 MHEEQEDQAGDDGDQPN----------------KKNREGPMAVILSPTRELAKQIGDHIK 321
Query: 281 DAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY-KI 337
P + V GG+S +KQ R L K I++ TPGRLWE + G L + + +I
Sbjct: 322 AVCDGLPASPYICVVTGGLSIQKQQRQLEKA-DIVIGTPGRLWEVLD-GDAKLQQQFTRI 379
Query: 338 NYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+LV+DE DR+ + G F E +NI LDR PE D
Sbjct: 380 KFLVVDEADRLFKVGQFKEAENIIGALDR-----------------ENPEENGYSDNSDA 422
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVD 453
+ ++ RQT VFSAT +L+ L G+ KS K + + L L + PK +D
Sbjct: 423 EDETRERQTLVFSATFDKNLQTKL---AGKGKSAKTGSDEEKMAYLMKCLKFRGEPKFID 479
Query: 454 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEK 513
+ + L E I C EKD YLY +L +PGR + + T
Sbjct: 480 VNPVSQMADNLREGLIECGAMEKDLYLYTVLLLNPGR---------------RTLVFTNS 524
Query: 514 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 573
I + +T +LQH L + LP
Sbjct: 525 ISAVRRITP-----------------LLQH-----------------------LNQNALP 544
Query: 574 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 633
LH+ M Q+ RL++L++F N+IL+ATDVAARGLDI ++ VIHYHVPR ++ Y+HRSG
Sbjct: 545 LHSQMIQKARLRSLEKFTAARNTILVATDVAARGLDIKEVDQVIHYHVPRAADTYVHRSG 604
Query: 634 RTARANNEGLTVVLIESDEI 653
RTARA+ G++++L DE+
Sbjct: 605 RTARADRSGVSIILCSPDEV 624
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 9/108 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--------PLYIKMFNSLEKKVDLPDFPIDES 1289
D ++HRSGRTARA+ G++++L DE+ ++ + +S +K+ + PID
Sbjct: 597 DTYVHRSGRTARADRSGVSIILCSPDEVLPTRRLASKVHAERASSGKKQHIIESLPIDRK 656
Query: 1290 VLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
+ S +K R+DLAK I + + +K K + D WL AA+++ + D E
Sbjct: 657 IASRLKPRLDLAKKITDAILAKEKAHSNDAWLRNAAEELGVEYDSEEF 704
Score = 49.3 bits (116), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 1317 DNWLEKAAKDMDIIIDDENLIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDA 1376
+ WL+ + D DD + QPN + R A+IL+PTRELA Q+ +HI
Sbjct: 273 EKWLDMHEEQEDQAGDDGD--QPN-------KKNREGPMAVILSPTRELAKQIGDHIKAV 323
Query: 1377 GKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
P + V GG+S +KQ R L K I++ TPG L
Sbjct: 324 CDGLPASPYICVVTGGLSIQKQQRQLEKA-DIVIGTPGRL 362
>gi|405124025|gb|AFR98787.1| ATP-dependent RNA helicase MAK5 [Cryptococcus neoformans var. grubii
H99]
Length = 771
Score = 327 bits (838), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 207/528 (39%), Positives = 303/528 (57%), Gaps = 77/528 (14%)
Query: 753 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 812
L+ + + N+D+ + EW + + R+ F PT IQS +P+ + R D+VG
Sbjct: 159 LDDEPAFNDDL---LPEWSSIPLHPALKRSFLASSFTAPTAIQSRAIPAGVTGR-DVVGV 214
Query: 813 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872
AETGSGKTLA+ +PIL ++ + + +G+
Sbjct: 215 AETGSGKTLAYSLPILHYLL-------AQRKRKAGI------------------------ 243
Query: 873 TRNKLYALILAPTRELAIQVQNHILDAGKYT-------------PVKVACVVGGMSTEKQ 919
+ L ALIL PTRELA+QV +H+ K+ V V VVGG+S +KQ
Sbjct: 244 -KRPLSALILCPTRELALQVMDHLNALLKHALATSDGEKPQGPPRVSVGSVVGGLSAQKQ 302
Query: 920 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL- 978
RIL++ ++VATPGRLW+ I+ T + + +LVIDE DRMIE+GHF EL++I+
Sbjct: 303 KRILDRGCDVIVATPGRLWDLIKADDELATNVRTLRFLVIDEADRMIENGHFAELESIVK 362
Query: 979 --------------DRV-----TMTETSQPR---QTFVFSATLTHSLKNSLNLKKGQSKS 1016
D V T+ E S R QTFVFSATL+ L+ NLK+ +
Sbjct: 363 LTQRSTAQQGPDDNDPVFEAMATLFEESAARDDMQTFVFSATLSKDLQK--NLKRRSTSW 420
Query: 1017 KKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K +++ L + L+ + +P+++DL+ + G+ +L ES I +KD YLYYF+L
Sbjct: 421 KGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGVVSSLRESMIESTKADKDLYLYYFLL 480
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
++PGR++VF NSI S++RL L T+L+ PLH+ + Q+QRLKNLDRF+ N IL+AT
Sbjct: 481 RYPGRSIVFVNSIDSIRRLLPLFTLLQLPIFPLHSHLQQKQRLKNLDRFKSNPNGILIAT 540
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDIP ++HV+H+++PRT++ YIHRSGRTARA NEG L L+ DE + +
Sbjct: 541 DVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRTARAQNEGFALQLVSPDEKSVQRALMK 600
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
SLE+ +LPD PI+ L +++R+ +A IE + + K D NWL
Sbjct: 601 SLERTHELPDLPIEAGFLPSLRERLRVATEIEKAQHRATKATHDKNWL 648
Score = 285 bits (729), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 196/533 (36%), Positives = 286/533 (53%), Gaps = 116/533 (21%)
Query: 136 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 195
L+ + + N+D+ + EW + + R+ F PT IQS +P+ + R D+VG
Sbjct: 159 LDDEPAFNDDL---LPEWSSIPLHPALKRSFLASSFTAPTAIQSRAIPAGVTGR-DVVGV 214
Query: 196 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 255
AETGSGKTLA+ +PIL ++ + + +G+
Sbjct: 215 AETGSGKTLAYSLPILHYLL-------AQRKRKAGI------------------------ 243
Query: 256 TRNKLYALILAPTRELAIQVQNHILDAGKYT-------------PVKVACVVGGMSTEKQ 302
+ L ALIL PTRELA+QV +H+ K+ V V VVGG+S +KQ
Sbjct: 244 -KRPLSALILCPTRELALQVMDHLNALLKHALATSDGEKPQGPPRVSVGSVVGGLSAQKQ 302
Query: 303 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 362
RIL++ ++VATPGRLW+ I+ T + + +LVIDE DRMIE+GHF EL++I
Sbjct: 303 KRILDRGCDVIVATPGRLWDLIKADDELATNVRTLRFLVIDEADRMIENGHFAELESI-- 360
Query: 363 RVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPR---QTFVFSATLTHSLKNSLN 419
V +T+ S +Q ++ P + + T+ E S R QTFVFSATL+ L+ N
Sbjct: 361 -VKLTQRSTAQQGPDDND--PVFEAM---ATLFEESAARDDMQTFVFSATLSKDLQK--N 412
Query: 420 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 479
LK+ + K K +S + DL EK+ D +D
Sbjct: 413 LKRRSTSWKGKGK--------------RSSTLEDLVEKL---------------DFRD-- 441
Query: 480 LYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 539
++P+++DL+ + G+ +L ES I +KD YLYYF
Sbjct: 442 -----------------------ENPEVIDLSPEGGVVSSLRESMIESTKADKDLYLYYF 478
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
+L++PGR++VF NSI S++RL L T+L+ PLH+ + Q+QRLKNLDRF+ N IL+
Sbjct: 479 LLRYPGRSIVFVNSIDSIRRLLPLFTLLQLPIFPLHSHLQQKQRLKNLDRFKSNPNGILI 538
Query: 600 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
ATDVAARGLDIP ++HV+H+++PRT++ YIHRSGRTARA NEG + L+ DE
Sbjct: 539 ATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRTARAQNEGFALQLVSPDE 591
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA NEG L L+ DE + + SLE+ +LPD PI+ L +++R
Sbjct: 565 DAYIHRSGRTARAQNEGFALQLVSPDEKSVQRALMKSLERTHELPDLPIEAGFLPSLRER 624
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIID 1332
+ +A IE + + K D NWL + A+ MDI ID
Sbjct: 625 LRVATEIEKAQHRATKATHDKNWLLETAEAMDIDID 660
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 17/94 (18%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYT-------------PVKVACVVGGMSTEKQLRILNK 1402
ALIL PTRELA+QV +H+ K+ V V VVGG+S +KQ RIL++
Sbjct: 249 ALILCPTRELALQVMDHLNALLKHALATSDGEKPQGPPRVSVGSVVGGLSAQKQKRILDR 308
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIKKNR 1436
++VATPG L DL K+ + L + ++ R
Sbjct: 309 GCDVIVATPGRL----WDLIKADDELATNVRTLR 338
>gi|323507773|emb|CBQ67644.1| related to MAK5-ATP-dependent RNA helicase [Sporisorium reilianum
SRZ2]
Length = 946
Score = 325 bits (832), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 204/567 (35%), Positives = 305/567 (53%), Gaps = 117/567 (20%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL------------------------LA 805
W + + RAL KGFK PT+IQ+ +P AL
Sbjct: 244 WSHLPLHAALKRALAHKGFKKPTEIQNRSIPLALGLQQEAASSDDSDDAAAANSSSSSRR 303
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
++D+VG ++TGSGKTLA+G+PIL + E AE + S
Sbjct: 304 KRDVVGVSQTGSGKTLAYGLPILNYLF-----------------ENAENAIASFSRPS-- 344
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV-------------------- 905
TT+ V L ALIL PTRELA+QV +H+ + + + +
Sbjct: 345 TTDDVPP---PLGALILCPTRELALQVSSHLTEIVRASCLVSSTTGDEDEISHKKLLRRP 401
Query: 906 KVACVVGGMSTEKQLRILNKCPH---------ILVATPGRLWEFIQLGHFHLTELYKINY 956
++A V GGMS +KQ R+L+ I+VATPGRLWE +L + + +
Sbjct: 402 QIAVVCGGMSEQKQRRLLDGRSRQGDRKAGVDIIVATPGRLWEMTRLDDNLAARIKQTRF 461
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPR-------------------------- 990
LV+DE DRM+E GHF E+++IL+ V +E +P
Sbjct: 462 LVLDEADRMVEVGHFAEMEHILNLVNRSEGRRPSEGKDGQLPQDDDDESEVETHGVKPSA 521
Query: 991 --QTFVFSATLTHSLKNSLNLKKGQS-----KSKKVSKGDPSIKRLQDLLNIK--SPKIV 1041
QTFVFSATL+ +L+ +L ++ Q + K + ++ L D ++ + SP ++
Sbjct: 522 NMQTFVFSATLSKALQINLKRRRKQKQFTKKRHSKRKENATTLDELMDRVDFRDDSPAVI 581
Query: 1042 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 1101
DLT G+ + L E+KI C +KD YLYYF+L++PGR+LVF NSI +++RLT +L L+
Sbjct: 582 DLTPGQGLPEGLMETKIECVGKDKDLYLYYFLLRYPGRSLVFVNSIDAIRRLTPILAQLQ 641
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQN------NSILLATDVAARGLDIPGIEHVIHYHVP 1155
+ P+H+ + Q+QRLKNLDRFR N N +LLATDVAARGLDIP +EHV+HY +P
Sbjct: 642 VTCYPIHSQLQQKQRLKNLDRFRTFNRSGRSANCVLLATDVAARGLDIPSVEHVVHYQLP 701
Query: 1156 RTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1215
R+++ Y+HRSGRTARA + G+ L LIE E L++++ ++ + D+ FP+ S L+L+
Sbjct: 702 RSADTYVHRSGRTARAGSSGVALALIEPKEKTLWLQLCRAMGRASDIATFPVTFSTLALL 761
Query: 1216 KKRIDLAKSIEYLESKIKKNRPD-NWL 1241
++R++LA +I+ K D +WL
Sbjct: 762 RERVELALAIDKQTHTANKQAHDESWL 788
Score = 249 bits (636), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 191/568 (33%), Positives = 274/568 (48%), Gaps = 148/568 (26%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL------------------------LA 188
W + + RAL KGFK PT+IQ+ +P AL
Sbjct: 244 WSHLPLHAALKRALAHKGFKKPTEIQNRSIPLALGLQQEAASSDDSDDAAAANSSSSSRR 303
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
++D+VG ++TGSGKTLA+G+PIL + E AE + S
Sbjct: 304 KRDVVGVSQTGSGKTLAYGLPILNYLF-----------------ENAENAIASFSRPS-- 344
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV-------------------- 288
TT+ V L ALIL PTRELA+QV +H+ + + + +
Sbjct: 345 TTDDVPP---PLGALILCPTRELALQVSSHLTEIVRASCLVSSTTGDEDEISHKKLLRRP 401
Query: 289 KVACVVGGMSTEKQLRILNKCPH---------ILVATPGRLWEFIQLGHFHLTELYKINY 339
++A V GGMS +KQ R+L+ I+VATPGRLWE +L + + +
Sbjct: 402 QIAVVCGGMSEQKQRRLLDGRSRQGDRKAGVDIIVATPGRLWEMTRLDDNLAARIKQTRF 461
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM--TET 397
LV+DE DRM+E GHF E+++IL+ V +E +P + + G P+ + V +
Sbjct: 462 LVLDEADRMVEVGHFAEMEHILNLVNRSEGRRPSEG--KDGQLPQDDDDESEVETHGVKP 519
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQ-----SKSKKVSKGDPSIKRLQDLLNIK--SPK 450
S QTFVFSATL+ +L+ +L ++ Q + K + ++ L D ++ + SP
Sbjct: 520 SANMQTFVFSATLSKALQINLKRRRKQKQFTKKRHSKRKENATTLDELMDRVDFRDDSPA 579
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
++DLT G+ + L E+KI C +KD YLYYF+L++PGR+L
Sbjct: 580 VIDLTPGQGLPEGLMETKIECVGKDKDLYLYYFLLRYPGRSLV----------------F 623
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
I + LT IL + LQ V C I S
Sbjct: 624 VNSIDAIRRLT--PILAQ------------LQ------VTCYPIHS-------------- 649
Query: 571 PLPLHASMNQRQRLKNLDRFRDQN------NSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+ Q+QRLKNLDRFR N N +LLATDVAARGLDIP +EHV+HY +PR+
Sbjct: 650 ------QLQQKQRLKNLDRFRTFNRSGRSANCVLLATDVAARGLDIPSVEHVVHYQLPRS 703
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDE 652
++ Y+HRSGRTARA + G+ + LIE E
Sbjct: 704 ADTYVHRSGRTARAGSSGVALALIEPKE 731
Score = 47.8 bits (112), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 35/111 (31%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPV--------------------KVACVVGGMSTEK 1395
ALIL PTRELA+QV +H+ + + + + ++A V GGMS +K
Sbjct: 355 ALILCPTRELALQVSSHLTEIVRASCLVSSTTGDEDEISHKKLLRRPQIAVVCGGMSEQK 414
Query: 1396 QLRILNKCPH---------ILVATPGAL-SLKRIDLAKSIEYLESKIKKNR 1436
Q R+L+ I+VATPG L + R+D + L ++IK+ R
Sbjct: 415 QRRLLDGRSRQGDRKAGVDIIVATPGRLWEMTRLD-----DNLAARIKQTR 460
>gi|346970819|gb|EGY14271.1| ATP-dependent RNA helicase MAK5 [Verticillium dahliae VdLs.17]
Length = 700
Score = 323 bits (827), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 211/516 (40%), Positives = 291/516 (56%), Gaps = 55/516 (10%)
Query: 753 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 812
LE + ED+ M+EW+ N+ I + + F PT IQS +P + A D++G
Sbjct: 124 LEEAEDDAEDL--DMSEWMGLNLSPATIATIRRLKFTKPTTIQSTAIPH-IQAGHDVIGK 180
Query: 813 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872
A TGSGKTLAFGIPI+ D LE+ EE +ESA T+ +
Sbjct: 181 ASTGSGKTLAFGIPIV----------------DKWLEKNGEE------QESAMETDDAPE 218
Query: 873 TRNKLYALILAPTRELAIQVQNHILD--AGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
+ L ALI++PTRELA Q+ NHI D AG V V GG+S KQ R L K I+
Sbjct: 219 AKAPL-ALIISPTRELAHQIMNHIKDLCAGLSKQPYVCSVTGGLSVYKQQRQLAKA-DIV 276
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTE-- 985
V TPGRLWE + + KI YLV+DE DR++ GHF E + I LDR E
Sbjct: 277 VGTPGRLWEVLSTNMTVMESFKKIQYLVVDEADRILSEGHFKEAEEIFKALDRNVTEEDD 336
Query: 986 ----TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PK 1039
T PRQT VFSAT L+ L G+ K +S+ + S++ L LN + P+
Sbjct: 337 EDEQTLSPRQTLVFSATFHKGLQQKL---AGKGKFGLMSE-EESMEYLLKRLNFREEKPE 392
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLT 1098
VD+ + K L E I C EKD YLY IL +P R +LVF NSIS+V+RLT +L
Sbjct: 393 FVDVNPVSQMAKGLKEGMIECGAMEKDLYLYALILLNPNRRSLVFTNSISTVRRLTPMLA 452
Query: 1099 MLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHVIHYHVP 1155
L + LPLH+ M Q+ RL++++RF R SIL+ATDVAARGLDIPGI+ VIHYHVP
Sbjct: 453 NLNLNALPLHSQMPQKARLRSVERFTSTRPGTASILIATDVAARGLDIPGIDQVIHYHVP 512
Query: 1156 RTSEIYIHRSGRTARANNEGLTLVLIESDEIP----LYIKMFN--SLEKKVDLPDFPIDE 1209
R +++Y+HRSGRTARA GL+++L +E+ L K+ + + + K + +D
Sbjct: 513 RAADMYVHRSGRTARAATSGLSILLCAPEEVTPTRRLAAKVHHEQAGKNKYLIRTVDVDR 572
Query: 1210 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
+ S +K R+DLAK + + + +K K + D+W+ ++
Sbjct: 573 KLASRLKPRVDLAKKLADAVLAKEKGGKDDDWVKKA 608
Score = 267 bits (682), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 196/529 (37%), Positives = 253/529 (47%), Gaps = 120/529 (22%)
Query: 136 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 195
LE + ED+ M+EW+ N+ I + + F PT IQS +P + A D++G
Sbjct: 124 LEEAEDDAEDL--DMSEWMGLNLSPATIATIRRLKFTKPTTIQSTAIPH-IQAGHDVIGK 180
Query: 196 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 255
A TGSGKTLAFGIPI+ D LE+ EE +ESA T+ +
Sbjct: 181 ASTGSGKTLAFGIPIV----------------DKWLEKNGEE------QESAMETDDAPE 218
Query: 256 TRNKLYALILAPTRELAIQVQNHILD--AGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
+ L ALI++PTRELA Q+ NHI D AG V V GG+S KQ R L K I+
Sbjct: 219 AKAPL-ALIISPTRELAHQIMNHIKDLCAGLSKQPYVCSVTGGLSVYKQQRQLAKA-DIV 276
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
V TPGRLWE + + KI YLV+DE DR++
Sbjct: 277 VGTPGRLWEVLSTNMTVMESFKKIQYLVVDEADRILSE---------------------- 314
Query: 374 QTMIESGHFPELKNI---LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 430
GHF E + I LDR E + QT TL S KG
Sbjct: 315 ------GHFKEAEEIFKALDRNVTEEDDEDEQTLSPRQTLVF----SATFHKG------- 357
Query: 431 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
LQ L K K G L +E YL
Sbjct: 358 ---------LQQKLAGKG--------KFG----------LMSEEESMEYLL--------- 381
Query: 491 TLCEEIQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-T 547
LN + P+ VD+ + K L E I C EKD YLY IL +P R +
Sbjct: 382 -------KRLNFREEKPEFVDVNPVSQMAKGLKEGMIECGAMEKDLYLYALILLNPNRRS 434
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVA 604
LVF NSIS+V+RLT +L L + LPLH+ M Q+ RL++++RF R SIL+ATDVA
Sbjct: 435 LVFTNSISTVRRLTPMLANLNLNALPLHSQMPQKARLRSVERFTSTRPGTASILIATDVA 494
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
ARGLDIPGI+ VIHYHVPR +++Y+HRSGRTARA GL+++L +E+
Sbjct: 495 ARGLDIPGIDQVIHYHVPRAADMYVHRSGRTARAATSGLSILLCAPEEV 543
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 21/120 (17%)
Query: 1317 DNWLEKAAKDMDIIIDDENLIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHILD- 1375
D WLEK ++ + ++ ++ + L ALI++PTRELA Q+ NHI D
Sbjct: 197 DKWLEKNGEEQESAMETDDAPEAKAPL------------ALIISPTRELAHQIMNHIKDL 244
Query: 1376 -AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL------SLKRIDLAKSIEYL 1428
AG V V GG+S KQ R L K I+V TPG L ++ ++ K I+YL
Sbjct: 245 CAGLSKQPYVCSVTGGLSVYKQQRQLAKA-DIVVGTPGRLWEVLSTNMTVMESFKKIQYL 303
>gi|449665189|ref|XP_004206086.1| PREDICTED: ATP-dependent RNA helicase DDX24-like, partial [Hydra
magnipapillata]
Length = 403
Score = 322 bits (826), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 169/375 (45%), Positives = 243/375 (64%), Gaps = 11/375 (2%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
K N L+ALIL PTRELAIQ+QNH+ KYT + VVGG++ KQ R+L+K P I++
Sbjct: 18 KKDNPLFALILTPTRELAIQIQNHLNCIAKYTDLSCFAVVGGLAQPKQERLLSKFPEIVI 77
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
TPGRL++ I+ G HL + I +LVIDE DRM+E GHF EL+ ++ + + RQ
Sbjct: 78 GTPGRLYKLIKDGDPHLNKFESIKFLVIDECDRMLEFGHFKELEELM--CIINSSQNRRQ 135
Query: 992 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
TFVFSATLT +K+ + SK +V++ + ++ LN K+ K++DLT K
Sbjct: 136 TFVFSATLTLPVKHKI-----YSKKNEVTQMQQLVDKIG--LNHKA-KVIDLTTKQVTAS 187
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
L + K++C +DEK+ YL YF++ HPGRT+VF NSIS KRL+ L T+L+ P+ LHA
Sbjct: 188 LLRQIKVICMNDEKEIYLTYFLMSHPGRTIVFVNSISLTKRLSSLFTLLRLEPIVLHAGK 247
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
Q+QRLK L+RF N +L ATDVAARGLDIP +++V+H+ +P+ +IYIHR+GRTARA
Sbjct: 248 QQKQRLKCLERFSSSENGLLFATDVAARGLDIPKVQNVVHFQLPKDPKIYIHRAGRTARA 307
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
GL+ +L+ ++ Y K+ ++L+ D+ ID L IK R++LAK I+ E K
Sbjct: 308 QENGLSFILLGPEDFKDYKKISDTLKLNADIASLNIDRGFLDGIKVRVELAKKIDKEEYK 367
Query: 1232 IKKNRPDN-WLHRSG 1245
+K +N W+ R+
Sbjct: 368 TRKETSENKWMQRTA 382
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 212/394 (53%), Gaps = 94/394 (23%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
K N L+ALIL PTRELAIQ+QNH+ KYT + VVGG++ KQ R+L+K P I++
Sbjct: 18 KKDNPLFALILTPTRELAIQIQNHLNCIAKYTDLSCFAVVGGLAQPKQERLLSKFPEIVI 77
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
TPGRL++ I+ G HL + I +LVIDE DRM+E G
Sbjct: 78 GTPGRLYKLIKDGDPHLNKFESIKFLVIDECDRMLEFG---------------------- 115
Query: 375 TMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD 434
HF EL+ ++ + + RQTFVFSATLT +K+ K SK +V++
Sbjct: 116 ------HFKELEELM--CIINSSQNRRQTFVFSATLTLPVKH-----KIYSKKNEVTQ-- 160
Query: 435 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCE 494
+ L +KIG
Sbjct: 161 ----------------MQQLVDKIG----------------------------------- 169
Query: 495 EIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554
LN K+ K++DLT K L + K++C +DEK+ YL YF++ HPGRT+VF NSI
Sbjct: 170 -----LNHKA-KVIDLTTKQVTASLLRQIKVICMNDEKEIYLTYFLMSHPGRTIVFVNSI 223
Query: 555 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 614
S KRL+ L T+L+ P+ LHA Q+QRLK L+RF N +L ATDVAARGLDIP ++
Sbjct: 224 SLTKRLSSLFTLLRLEPIVLHAGKQQKQRLKCLERFSSSENGLLFATDVAARGLDIPKVQ 283
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+V+H+ +P+ +IYIHR+GRTARA GL+ +L+
Sbjct: 284 NVVHFQLPKDPKIYIHRAGRTARAQENGLSFILL 317
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELAIQ+QNH+ KYT + VVGG++ KQ R+L+K P I++ TPG L
Sbjct: 25 ALILTPTRELAIQIQNHLNCIAKYTDLSCFAVVGGLAQPKQERLLSKFPEIVIGTPGRL 83
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P ++HR+GRTARA GL+ +L+ ++ Y K+ ++L+ D+ ID L IK
Sbjct: 294 PKIYIHRAGRTARAQENGLSFILLGPEDFKDYKKISDTLKLNADIASLNIDRGFLDGIKV 353
Query: 1297 RIDLAKSIEYLESKIKKNRPDN-WLEKAAKDMDIIIDDEN 1335
R++LAK I+ E K +K +N W+++ A +DI +D +N
Sbjct: 354 RVELAKKIDKEEYKTRKETSENKWMQRTANCIDIDVDLQN 393
>gi|313238237|emb|CBY13329.1| unnamed protein product [Oikopleura dioica]
Length = 598
Score = 322 bits (825), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 192/491 (39%), Positives = 272/491 (55%), Gaps = 66/491 (13%)
Query: 758 SNNEDMFV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
SN+E +F ++ EW +FN+ ++RA+ GFK+PT IQ +P L ++K I+GAAETG
Sbjct: 129 SNSEYVFQNKLPEWRRFNLDVALLRAIDSLGFKSPTDIQRQCIPKGLNSKKTILGAAETG 188
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
SGKT+A+G+PIL I+ L+ EE++
Sbjct: 189 SGKTIAYGLPILQKIIGYLDFS---------------------EEKTVGPQ--------- 218
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPG 935
ALIL PTRELA+QV + I K+T VK +VGGM+ EKQ R+L+K P I+VATPG
Sbjct: 219 --ALILCPTRELAMQVHDSIRLVSKFTSVKTTAIVGGMAAEKQQRVLSKIRPEIIVATPG 276
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
R WE + G +L L I Y V+DE DRM E GHF EL I+ + S+ Q FVF
Sbjct: 277 RFWELRETGQEYLQNLRSIKYFVVDEADRMAEKGHFAELDKIVGTL-----SRESQKFVF 331
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SATLT + NS + + + K++ IK+L + K+ LTEK
Sbjct: 332 SATLTLTHVNSDRMDRMKIKTETTK---SKIKKLMKAI----VKVSILTEK--------- 375
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
+KD +LY+ + + GR++VFCNSI+ V RL LL LK LHA++ Q+Q
Sbjct: 376 --------DKDLWLYFMLKKQEGRSIVFCNSITGVLRLRGLLDTLKLPVRSLHANLKQKQ 427
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
RLKNLD FR + ILLATDVAARGLDIP ++ +IH+ P +E Y+HRSGR RA G
Sbjct: 428 RLKNLDAFRKSTDGILLATDVAARGLDIPNVDQIIHFQFPNAAETYVHRSGRCGRAGRSG 487
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN 1235
+ L++ ++ Y K+ ++L KK L ++ E + IDLAK ++ + +K
Sbjct: 488 TAVTLLKDSDVKNYKKVLHTL-KKAPLDNYS-GEMPPKFYNELIDLAKKVDVFTYRKRKT 545
Query: 1236 RPDN-WLHRSG 1245
D W+ ++
Sbjct: 546 NSDKCWMKKNA 556
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 173/517 (33%), Positives = 244/517 (47%), Gaps = 151/517 (29%)
Query: 141 SNNEDMFV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
SN+E +F ++ EW +FN+ ++RA+ GFK+PT IQ +P L ++K I+GAAETG
Sbjct: 129 SNSEYVFQNKLPEWRRFNLDVALLRAIDSLGFKSPTDIQRQCIPKGLNSKKTILGAAETG 188
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKT+A+G+PIL I+ L+ EE++
Sbjct: 189 SGKTIAYGLPILQKIIGYLDFS---------------------EEKTVGPQ--------- 218
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPG 318
ALIL PTRELA+QV + I K+T VK +VGGM+ EKQ R+L+K P I+VATPG
Sbjct: 219 --ALILCPTRELAMQVHDSIRLVSKFTSVKTTAIVGGMAAEKQQRVLSKIRPEIIVATPG 276
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
R WE + G +L L I Y V+DE DRM E GHF EL I+ +
Sbjct: 277 RFWELRETGQEYLQNLRSIKYFVVDEADRMAEKGHFAELDKIVGTL-------------- 322
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
S+ Q FVFSATLT + NS + + + K++ IK
Sbjct: 323 -------------------SRESQKFVFSATLTLTHVNSDRMDRMKIKTETTK---SKIK 360
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL--CEEI 496
+L + K+ LTEK +KD +LY+ + + GR++ C I
Sbjct: 361 KLMKAI----VKVSILTEK-----------------DKDLWLYFMLKKQEGRSIVFCNSI 399
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556
+L ++ G+ T L+ P R+L
Sbjct: 400 TGVLRLR-----------GLLDT---------------------LKLPVRSL-------- 419
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616
HA++ Q+QRLKNLD FR + ILLATDVAARGLDIP ++ +
Sbjct: 420 ------------------HANLKQKQRLKNLDAFRKSTDGILLATDVAARGLDIPNVDQI 461
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
IH+ P +E Y+HRSGR RA G V L++ ++
Sbjct: 462 IHFQFPNAAETYVHRSGRCGRAGRSGTAVTLLKDSDV 498
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPG 1412
ALIL PTRELA+QV + I K+T VK +VGGM+ EKQ R+L+K P I+VATPG
Sbjct: 219 ALILCPTRELAMQVHDSIRLVSKFTSVKTTAIVGGMAAEKQQRVLSKIRPEIIVATPG 276
Score = 43.1 bits (100), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N + ++HRSGR RA G + L++ ++ Y K+ ++L KK L ++ E
Sbjct: 468 NAAETYVHRSGRCGRAGRSGTAVTLLKDSDVKNYKKVLHTL-KKAPLDNYS-GEMPPKFY 525
Query: 1295 KKRIDLAKSIEYLESKIKKNRPDN-WLEKAAKDMDI 1329
+ IDLAK ++ + +K D W++K A+ +I
Sbjct: 526 NELIDLAKKVDVFTYRKRKTNSDKCWMKKNAELCEI 561
>gi|321261600|ref|XP_003195519.1| ATP dependent RNA helicase [Cryptococcus gattii WM276]
gi|317461993|gb|ADV23732.1| ATP dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 772
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 200/521 (38%), Positives = 295/521 (56%), Gaps = 77/521 (14%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
N+D+ + EW ++ + R+ F PT IQS +P+ + R D+VG AETGSGK
Sbjct: 167 NDDL---LPEWSSISLHPALKRSFLASSFTAPTAIQSRAIPAGITGR-DVVGVAETGSGK 222
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879
TLA+ +PIL ++ + + + L A
Sbjct: 223 TLAYALPILHYLLGQ--------------------------------RKLRAGIKRPLSA 250
Query: 880 LILAPTRELAIQVQNHILDAGKYT-------------PVKVACVVGGMSTEKQLRILNKC 926
L+L PTRELA+QV +H+ K+ + V VVGG+S +KQ RIL++
Sbjct: 251 LVLCPTRELALQVMDHLNALLKHALATSDGEKPQGPPRISVGSVVGGLSAQKQKRILDRG 310
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-------- 978
+++ATPGRLW+ I+ T + + +LVIDE DRMIE+GHF EL++I+
Sbjct: 311 CDVIIATPGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGHFAELESIVKLTQRSTV 370
Query: 979 -------DRV-----TMTETSQPR---QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD 1023
D V T+ E S R QTFVFSATL+ L+ NLK+ K K
Sbjct: 371 KQGPDDDDPVFQAMATIFEESVARDDMQTFVFSATLSKDLQT--NLKRRSRSWKGKGKRS 428
Query: 1024 PSIKRLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 1081
+++ L + L+ + +P+++DL+ + G+ +L ES I +KD YLYYF+L++PGR++
Sbjct: 429 STLEDLVEKLDFRDENPEVIDLSPEGGVVSSLRESMIESTKADKDLYLYYFLLRYPGRSI 488
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
+F NSI S++RL L T+L+ PLH+ + Q+QRLKNLDRF+ N IL+ATDVAARGL
Sbjct: 489 IFVNSIDSIRRLLPLFTLLQLPIFPLHSHLQQKQRLKNLDRFKSNPNGILIATDVAARGL 548
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
DIP ++HV+H+++PRT++ YIHRSGRTARA NEG L L+ DE + + SLE+ +
Sbjct: 549 DIPHVDHVVHFNLPRTADAYIHRSGRTARAQNEGFALQLVSPDEKSVQRALMKSLERTHE 608
Query: 1202 LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
LPD I+ L +++R+ +A IE + + K D NWL
Sbjct: 609 LPDLSIEAGFLPSLRERLRVATEIEKAQHRATKATHDKNWL 649
Score = 284 bits (727), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 193/526 (36%), Positives = 283/526 (53%), Gaps = 116/526 (22%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
N+D+ + EW ++ + R+ F PT IQS +P+ + R D+VG AETGSGK
Sbjct: 167 NDDL---LPEWSSISLHPALKRSFLASSFTAPTAIQSRAIPAGITGR-DVVGVAETGSGK 222
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262
TLA+ +PIL ++ + + + L A
Sbjct: 223 TLAYALPILHYLLGQ--------------------------------RKLRAGIKRPLSA 250
Query: 263 LILAPTRELAIQVQNHILDAGKYT-------------PVKVACVVGGMSTEKQLRILNKC 309
L+L PTRELA+QV +H+ K+ + V VVGG+S +KQ RIL++
Sbjct: 251 LVLCPTRELALQVMDHLNALLKHALATSDGEKPQGPPRISVGSVVGGLSAQKQKRILDRG 310
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
+++ATPGRLW+ I+ T + + +LVIDE DRMIE+GHF EL++I V +T+
Sbjct: 311 CDVIIATPGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGHFAELESI---VKLTQR 367
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTETSQPR---QTFVFSATLTHSLKNSLNLKKGQSK 426
S +Q + P + + T+ E S R QTFVFSATL+ L+ NLK+ +S+
Sbjct: 368 STVKQGPDDDD--PVFQAM---ATIFEESVARDDMQTFVFSATLSKDLQT--NLKR-RSR 419
Query: 427 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 486
S K KG +S + DL EK+ D +D
Sbjct: 420 SWK-GKGK------------RSSTLEDLVEKL---------------DFRD--------- 442
Query: 487 HPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 546
++P+++DL+ + G+ +L ES I +KD YLYYF+L++PGR
Sbjct: 443 ----------------ENPEVIDLSPEGGVVSSLRESMIESTKADKDLYLYYFLLRYPGR 486
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
+++F NSI S++RL L T+L+ PLH+ + Q+QRLKNLDRF+ N IL+ATDVAAR
Sbjct: 487 SIIFVNSIDSIRRLLPLFTLLQLPIFPLHSHLQQKQRLKNLDRFKSNPNGILIATDVAAR 546
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
GLDIP ++HV+H+++PRT++ YIHRSGRTARA NEG + L+ DE
Sbjct: 547 GLDIPHVDHVVHFNLPRTADAYIHRSGRTARAQNEGFALQLVSPDE 592
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA NEG L L+ DE + + SLE+ +LPD I+ L +++R
Sbjct: 566 DAYIHRSGRTARAQNEGFALQLVSPDEKSVQRALMKSLERTHELPDLSIEAGFLPSLRER 625
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIID 1332
+ +A IE + + K D NWL +AA+ MDI ID
Sbjct: 626 LRVATEIEKAQHRATKATHDKNWLLEAAEAMDIDID 661
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 17/94 (18%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYT-------------PVKVACVVGGMSTEKQLRILNK 1402
AL+L PTRELA+QV +H+ K+ + V VVGG+S +KQ RIL++
Sbjct: 250 ALVLCPTRELALQVMDHLNALLKHALATSDGEKPQGPPRISVGSVVGGLSAQKQKRILDR 309
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIKKNR 1436
+++ATPG L DL K+ + L + ++ R
Sbjct: 310 GCDVIIATPGRL----WDLIKADDELATSVRTLR 339
>gi|322693567|gb|EFY85423.1| ATP-dependent RNA helicase MAK5 [Metarhizium acridum CQMa 102]
Length = 794
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 207/569 (36%), Positives = 307/569 (53%), Gaps = 73/569 (12%)
Query: 720 NKTEEIQSDEPHSKKLKQKKKKKQ-----------TYTSANKEL----LEVDTSNNEDMF 764
KT ++Q S QKK KKQ ++ + N+ L + + + N+D+
Sbjct: 152 GKTSKLQKGRQQSDNGTQKKSKKQKMGDKKLQKSASHGTGNEFLALAAMADEEAENDDL- 210
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
M +WV N+ ++ A+ + GF PT IQ +P ++A D++G A+TGSGKTLAFG
Sbjct: 211 -DMGDWVALNLSPNLVSAIAKLGFSKPTAIQEKSIPE-IIAGGDVIGKAQTGSGKTLAFG 268
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-YALILA 883
IPI+ E+ E+ EE E++ + + KK + A+IL+
Sbjct: 269 IPIV---------------------EKWLEMREEQEDQGGDRGDQPKKKNGEGPMAVILS 307
Query: 884 PTRELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
PTRELA Q+ HI P + V GG+S +KQ R L + I++ TPGRLWE +
Sbjct: 308 PTRELAKQIGEHIKAVCDGLPASPYICVVTGGLSIQKQQRQLEEA-DIVIGTPGRLWEVL 366
Query: 942 QLGHFHLTELY-KINYLVIDETDRMIESGHFPELKNIL--------------DRVTMTET 986
G L E + +I +LV+DE DR+ + G F E +NI+ D +
Sbjct: 367 D-GDAKLQEQFTRIKFLVVDEADRLFKVGQFKEAENIIGALDRENPEGHGYSDNSDSEDE 425
Query: 987 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTE 1045
++ RQT VFSAT +L+ L G+ KS K + + L L + PK +D+
Sbjct: 426 TRERQTLVFSATFDKNLQTKL---AGKGKSAKAGSDEEKMAYLMKCLKFRGEPKFIDVNP 482
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSP 1104
+ L E I C EKD YLY +L +PGR TLVF NSIS+V+R+T LL L +
Sbjct: 483 VSQMADNLREVLIECGAMEKDLYLYTVLLLNPGRRTLVFTNSISAVRRITPLLQHLNQNA 542
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
LPLH+ M Q+ RL++L++F N+IL+ATDVAARGLDI ++ VIHYHVPR ++ YIHR
Sbjct: 543 LPLHSQMIQKARLRSLEKFTAARNTILVATDVAARGLDIKEVDQVIHYHVPRAADTYIHR 602
Query: 1165 SGRTARANNEGLTLVLIESDEI--------PLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1216
SGRTARA+ G++++L DE+ ++ + +S +K+ + PID + S +K
Sbjct: 603 SGRTARADRSGVSIILCSPDEVLPTRRLASKVHAERASSGKKQHIIESLPIDRKIASRLK 662
Query: 1217 KRIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
R+DLAK I + + +K K + D WL +
Sbjct: 663 PRLDLAKRITDAILAKEKAHSNDTWLRNA 691
Score = 261 bits (668), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 185/563 (32%), Positives = 273/563 (48%), Gaps = 119/563 (21%)
Query: 109 QSDEPSSKKLKQKK------KKKQTYTSANKEL----LEVDTSNNEDMFVQMAEWVKFNI 158
QSD + KK K++K +K ++ + N+ L + + + N+D+ M +WV N+
Sbjct: 163 QSDNGTQKKSKKQKMGDKKLQKSASHGTGNEFLALAAMADEEAENDDL--DMGDWVALNL 220
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
++ A+ + GF PT IQ +P ++A D++G A+TGSGKTLAFGIPI+
Sbjct: 221 SPNLVSAIAKLGFSKPTAIQEKSIPE-IIAGGDVIGKAQTGSGKTLAFGIPIV------- 272
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-YALILAPTRELAIQVQN 277
E+ E+ EE E++ + + KK + A+IL+PTRELA Q+
Sbjct: 273 --------------EKWLEMREEQEDQGGDRGDQPKKKNGEGPMAVILSPTRELAKQIGE 318
Query: 278 HILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
HI P + V GG+S +KQ R L + I++ TPGRLWE + G L E +
Sbjct: 319 HIKAVCDGLPASPYICVVTGGLSIQKQQRQLEEA-DIVIGTPGRLWEVLD-GDAKLQEQF 376
Query: 336 -KINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+I +LV+DE DR+ + G F E +NI LDR PE D
Sbjct: 377 TRIKFLVVDEADRLFKVGQFKEAENIIGALDR-----------------ENPEGHGYSDN 419
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PK 450
+ ++ RQT VFSAT +L+ L G+ KS K + + L L + PK
Sbjct: 420 SDSEDETRERQTLVFSATFDKNLQTKL---AGKGKSAKAGSDEEKMAYLMKCLKFRGEPK 476
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
+D+ + L E I C EKD YLY +L +PGR + +
Sbjct: 477 FIDVNPVSQMADNLREVLIECGAMEKDLYLYTVLLLNPGR---------------RTLVF 521
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
T I + +T +LQH L +
Sbjct: 522 TNSISAVRRITP-----------------LLQH-----------------------LNQN 541
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
LPLH+ M Q+ RL++L++F N+IL+ATDVAARGLDI ++ VIHYHVPR ++ YIH
Sbjct: 542 ALPLHSQMIQKARLRSLEKFTAARNTILVATDVAARGLDIKEVDQVIHYHVPRAADTYIH 601
Query: 631 RSGRTARANNEGLTVVLIESDEI 653
RSGRTARA+ G++++L DE+
Sbjct: 602 RSGRTARADRSGVSIILCSPDEV 624
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 9/108 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--------PLYIKMFNSLEKKVDLPDFPIDES 1289
D ++HRSGRTARA+ G++++L DE+ ++ + +S +K+ + PID
Sbjct: 597 DTYIHRSGRTARADRSGVSIILCSPDEVLPTRRLASKVHAERASSGKKQHIIESLPIDRK 656
Query: 1290 VLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
+ S +K R+DLAK I + + +K K + D WL AA+++ + D E
Sbjct: 657 IASRLKPRLDLAKRITDAILAKEKAHSNDTWLRNAAEELGVEYDSEEF 704
Score = 45.4 bits (106), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGA 1413
A+IL+PTRELA Q+ HI P + V GG+S +KQ R L + I++ TPG
Sbjct: 303 AVILSPTRELAKQIGEHIKAVCDGLPASPYICVVTGGLSIQKQQRQLEEA-DIVIGTPGR 361
Query: 1414 L 1414
L
Sbjct: 362 L 362
>gi|328771868|gb|EGF81907.1| hypothetical protein BATDEDRAFT_10092 [Batrachochytrium dendrobatidis
JAM81]
Length = 529
Score = 320 bits (821), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 179/439 (40%), Positives = 249/439 (56%), Gaps = 69/439 (15%)
Query: 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
++W++F + +++ L++ GF PT IQ+ + + L+ KDI+GAAETGSGKTLAFG+PI
Sbjct: 148 SKWLEFGLNLQLVQTLHKLGFSCPTDIQAKSLENTLVRHKDIIGAAETGSGKTLAFGLPI 207
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L + +L+ K LI+ PTRE
Sbjct: 208 LHHLAIQLQ----------------------------------KNPNTACIGLIITPTRE 233
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LAIQV +H+ AG K+ +VGGMS +KQ R++ PHI+V TPGRLWE IQ
Sbjct: 234 LAIQVSDHLKRAGAAITHKITPIVGGMSLQKQRRLIATKPHIIVGTPGRLWELIQEDPEL 293
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP----RQTFVFSATLTHS- 1002
L L YLVIDE DRM+E+GHF +L +IL +++ T R+T VFSAT+
Sbjct: 294 LDMLKHTTYLVIDEADRMLEAGHFKDLDSILGCISVCNTDNASQIKRRTMVFSATMLEDD 353
Query: 1003 ---LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 1059
K +LN KK IKS + K L ESKI
Sbjct: 354 AIKQKATLNFKKHN--------------------KIKSSLFI-------TAKGLLESKIN 386
Query: 1060 CKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
C EKD+ LYY + ++ +T+VF NSI +++RL +L+ L LHA M QRQRLKN
Sbjct: 387 CLKTEKDTMLYYVLCRYTAKTIVFVNSIDAIRRLVPILSYLGVQVFGLHAEMQQRQRLKN 446
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
LDRF + N +L+A+DVA+RGLDIP ++HVIHY +PR ++IY+HRSGRTARAN EG+++
Sbjct: 447 LDRFVETPNGVLIASDVASRGLDIPKVDHVIHYQLPRAADIYVHRSGRTARANAEGVSVA 506
Query: 1180 LIESDEIPLYIKMFNSLEK 1198
L+ +E+ Y K+ ++L K
Sbjct: 507 LVCPEELVTYKKICHALSK 525
Score = 175 bits (444), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 162/346 (46%), Gaps = 89/346 (25%)
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
++W++F + +++ L++ GF PT IQ+ + + L+ KDI+GAAETGSGKTLAFG+PI
Sbjct: 148 SKWLEFGLNLQLVQTLHKLGFSCPTDIQAKSLENTLVRHKDIIGAAETGSGKTLAFGLPI 207
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L + +L+ K LI+ PTRE
Sbjct: 208 LHHLAIQLQ----------------------------------KNPNTACIGLIITPTRE 233
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LAIQV +H+ AG K+ +VGGMS +KQ R++ PHI+V TPGRLWE IQ
Sbjct: 234 LAIQVSDHLKRAGAAITHKITPIVGGMSLQKQRRLIATKPHIIVGTPGRLWELIQEDPEL 293
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L L YLVIDE DRM+E+GHF +L +IL +++ T Q
Sbjct: 294 LDMLKHTTYLVIDEADRMLEAGHFKDLDSILGCISVCNTDNASQI--------------- 338
Query: 391 RVTMTETSQPRQTFVFSATLTHS----LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 446
R+T VFSAT+ K +LN KK I
Sbjct: 339 ---------KRRTMVFSATMLEDDAIKQKATLNFKKHN--------------------KI 369
Query: 447 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
KS + K L ESKI C EKD+ LYY + ++ +T+
Sbjct: 370 KSSLFI-------TAKGLLESKINCLKTEKDTMLYYVLCRYTAKTI 408
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 101/137 (73%)
Query: 517 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA 576
K L ESKI C EKD+ LYY + ++ +T+VF NSI +++RL +L+ L LHA
Sbjct: 377 AKGLLESKINCLKTEKDTMLYYVLCRYTAKTIVFVNSIDAIRRLVPILSYLGVQVFGLHA 436
Query: 577 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 636
M QRQRLKNLDRF + N +L+A+DVA+RGLDIP ++HVIHY +PR ++IY+HRSGRTA
Sbjct: 437 EMQQRQRLKNLDRFVETPNGVLIASDVASRGLDIPKVDHVIHYQLPRAADIYVHRSGRTA 496
Query: 637 RANNEGLTVVLIESDEI 653
RAN EG++V L+ +E+
Sbjct: 497 RANAEGVSVALVCPEEL 513
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 1340 NQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 1399
+ L I +N + LI+ PTRELAIQV +H+ AG K+ +VGGMS +KQ R+
Sbjct: 209 HHLAIQLQKNPNTACIGLIITPTRELAIQVSDHLKRAGAAITHKITPIVGGMSLQKQRRL 268
Query: 1400 LNKCPHILVATPGAL------SLKRIDLAKSIEYLESKIKKNRPDNWLEKAA-KDMDIII 1452
+ PHI+V TPG L + +D+ K YL + D LE KD+D I+
Sbjct: 269 IATKPHIIVGTPGRLWELIQEDPELLDMLKHTTYLVI----DEADRMLEAGHFKDLDSIL 324
Score = 44.3 bits (103), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1277
D ++HRSGRTARAN EG+++ L+ +E+ Y K+ ++L K
Sbjct: 486 DIYVHRSGRTARANAEGVSVALVCPEELVTYKKICHALSK 525
>gi|353233430|emb|CCD80785.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 722
Score = 318 bits (814), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 216/631 (34%), Positives = 323/631 (51%), Gaps = 142/631 (22%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
SN++ V++ W N+P+ I++AL G + PT IQ+ +P AL D++G+A TGS
Sbjct: 8 SNSQGCRVEVMGWDSLNLPDYIVKALSDCGLENPTPIQTAAIPPALHGFSDVLGSAPTGS 67
Query: 818 GKTLAFGIPILTGIVN--KLENPTEEDEN--DSGLEEEAEEV------------------ 855
GKTLAFGIP+++ + + L++ T E+E+ +S ++++ EV
Sbjct: 68 GKTLAFGIPLVSKVFSLKTLQSQTCEEESKINSVIDQQKYEVASCVKPCGKKKKRKKETD 127
Query: 856 ----LEELEEESANTTEFVKK---------------------------TRNKLYALILAP 884
L+ +EE NT E RN++Y L+L P
Sbjct: 128 IYSGLDVIEELDVNTGEIRAVHSLGDPVTEDSETLPIIEPPVCLKPNLNRNRVYGLVLVP 187
Query: 885 TRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943
TRELAIQV H+ KY +++ +VGG+S +KQLR+L +CP ILVATPGRLW FIQ
Sbjct: 188 TRELAIQVTQHLRALMKYVDYIRIETIVGGISVDKQLRLLRRCPDILVATPGRLWHFIQQ 247
Query: 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR----------------------- 980
G HL L+ +N +V+DE DRMIE+ HF +L+ I +
Sbjct: 248 GEPHLLTLHSVNVVVVDEADRMIEANHFDDLRAIFNWLHSSSSFNNEGKEEEQEDTTHLK 307
Query: 981 -----------VTMTETSQ-----PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP 1024
+ M++ S RQT +FSATLT +L G K +
Sbjct: 308 KTLNLKRKHKLIEMSDHSTDMNRVQRQTLIFSATLTFVHSGALKPGTGSKNHKLLPNNKN 367
Query: 1025 SIKR------LQDLLNIK-SPKIVDLTE---------------KIGITKTLTESKILCKH 1062
++ + L+++ +K S K++DL+ K TL+E ++LC
Sbjct: 368 TMTKKIKLAVLREMFGLKKSAKVIDLSSNHSTDQSVSNPGLICKSTCPDTLSECRLLCPS 427
Query: 1063 DE-KDSYLYYFIL--QHPG-------RTLVFCNSISSVKRLTQLLTML------KCSPLP 1106
E KD L++FI +H G R L+F NS S V+RL +L L S P
Sbjct: 428 QESKDIRLFWFIAFGRHLGSSEYSNRRCLIFLNSKSGVRRLAGVLRQLLSPDAFSVSGYP 487
Query: 1107 -------LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
LHA M Q+QRL+ L+RF+ N ILLA+DVAARGLD+ I VIH+ VPRT+E
Sbjct: 488 SLQYVNVLHADMVQKQRLRALERFQADPNGILLASDVAARGLDLASISWVIHFDVPRTAE 547
Query: 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESV--LSLIK 1216
+YIHRSGRTARAN +G +L+ I +EI + ++ SL++ ++L DF I + L++ +
Sbjct: 548 LYIHRSGRTARANRQGTSLLFISPNEITFWRRISVSLQRTNMELDDFTIQPTTIQLTISE 607
Query: 1217 KRIDLAKSIEYLESK-IKKNRPDNWLHRSGR 1246
+ + LAK I+ E + +K DNW ++ +
Sbjct: 608 QIVKLAKQIDIQEHRNSRKLANDNWFTKAAK 638
Score = 306 bits (784), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 205/624 (32%), Positives = 311/624 (49%), Gaps = 136/624 (21%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
SN++ V++ W N+P+ I++AL G + PT IQ+ +P AL D++G+A TGS
Sbjct: 8 SNSQGCRVEVMGWDSLNLPDYIVKALSDCGLENPTPIQTAAIPPALHGFSDVLGSAPTGS 67
Query: 201 GKTLAFGIPILTGIVN--KLENPTEEDEN--DSGLEEEAEEV------------------ 238
GKTLAFGIP+++ + + L++ T E+E+ +S ++++ EV
Sbjct: 68 GKTLAFGIPLVSKVFSLKTLQSQTCEEESKINSVIDQQKYEVASCVKPCGKKKKRKKETD 127
Query: 239 ----LEELEEESANTTEFVKK---------------------------TRNKLYALILAP 267
L+ +EE NT E RN++Y L+L P
Sbjct: 128 IYSGLDVIEELDVNTGEIRAVHSLGDPVTEDSETLPIIEPPVCLKPNLNRNRVYGLVLVP 187
Query: 268 TRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326
TRELAIQV H+ KY +++ +VGG+S +KQLR+L +CP ILVATPGRLW FIQ
Sbjct: 188 TRELAIQVTQHLRALMKYVDYIRIETIVGGISVDKQLRLLRRCPDILVATPGRLWHFIQQ 247
Query: 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET---SQPRQTMIESGHFP 383
G HL L+ +N +V+DE DRMIE+ HF +L+ I + + + + + ++ H
Sbjct: 248 GEPHLLTLHSVNVVVVDEADRMIEANHFDDLRAIFNWLHSSSSFNNEGKEEEQEDTTHLK 307
Query: 384 ELKNILDRVTMTETSQ--------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP 435
+ N+ + + E S RQT +FSATLT +L G K +
Sbjct: 308 KTLNLKRKHKLIEMSDHSTDMNRVQRQTLIFSATLTFVHSGALKPGTGSKNHKLLPNNKN 367
Query: 436 SIKR------LQDLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 488
++ + L+++ +K S K++DL+ ++++ ++CK D
Sbjct: 368 TMTKKIKLAVLREMFGLKKSAKVIDLSSNHSTDQSVSNPGLICKSTCPD----------- 416
Query: 489 GRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFIL--QHPG 545
TL+E ++LC E KD L++FI +H G
Sbjct: 417 ------------------------------TLSECRLLCPSQESKDIRLFWFIAFGRHLG 446
Query: 546 -------RTLVFCNSISSVKRLTQLLTML------KCSPLP-------LHASMNQRQRLK 585
R L+F NS S V+RL +L L S P LHA M Q+QRL+
Sbjct: 447 SSEYSNRRCLIFLNSKSGVRRLAGVLRQLLSPDAFSVSGYPSLQYVNVLHADMVQKQRLR 506
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
L+RF+ N ILLA+DVAARGLD+ I VIH+ VPRT+E+YIHRSGRTARAN +G ++
Sbjct: 507 ALERFQADPNGILLASDVAARGLDLASISWVIHFDVPRTAELYIHRSGRTARANRQGTSL 566
Query: 646 VLIESDEIPLKTKFNLQEEENNEE 669
+ I +EI + ++ + N E
Sbjct: 567 LFISPNEITFWRRISVSLQRTNME 590
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 9/86 (10%)
Query: 1330 IIDDENLIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTP-VKVACVV 1388
II+ ++PN +RN Y L+L PTRELAIQV H+ KY +++ +V
Sbjct: 164 IIEPPVCLKPNL-----NRNRVY---GLVLVPTRELAIQVTQHLRALMKYVDYIRIETIV 215
Query: 1389 GGMSTEKQLRILNKCPHILVATPGAL 1414
GG+S +KQLR+L +CP ILVATPG L
Sbjct: 216 GGISVDKQLRLLRRCPDILVATPGRL 241
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESV--LSLIKK 1296
++HRSGRTARAN +G +L+ I +EI + ++ SL++ ++L DF I + L++ ++
Sbjct: 549 YIHRSGRTARANRQGTSLLFISPNEITFWRRISVSLQRTNMELDDFTIQPTTIQLTISEQ 608
Query: 1297 RIDLAKSIEYLESK-IKKNRPDNWLEKAAK 1325
+ LAK I+ E + +K DNW KAAK
Sbjct: 609 IVKLAKQIDIQEHRNSRKLANDNWFTKAAK 638
>gi|256073668|ref|XP_002573151.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 722
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 216/631 (34%), Positives = 323/631 (51%), Gaps = 142/631 (22%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
SN++ V++ W N+P+ I++AL G + PT IQ+ +P AL D++G+A TGS
Sbjct: 8 SNSQGCRVEVMGWDSLNLPDYIVKALSDCGLENPTPIQTAAIPPALHGFSDVLGSAPTGS 67
Query: 818 GKTLAFGIPILTGIVN--KLENPTEEDEN--DSGLEEEAEEV------------------ 855
GKTLAFGIP+++ + + L++ T E+E+ +S ++++ EV
Sbjct: 68 GKTLAFGIPLVSKVFSLKTLQSQTCEEESKINSVIDQQKYEVASCVKPCGKKKKRKKETD 127
Query: 856 ----LEELEEESANTTEFVKK---------------------------TRNKLYALILAP 884
L+ +EE NT E RN++Y L+L P
Sbjct: 128 IYSGLDVIEELDVNTGEIRAVHSLGDPVTEDSETLPIIEPPVCLKPNLNRNRVYGLVLVP 187
Query: 885 TRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943
TRELAIQV H+ KY +++ +VGG+S +KQLR+L +CP ILVATPGRLW FIQ
Sbjct: 188 TRELAIQVTQHLRALMKYVDYIRIETIVGGISVDKQLRLLRRCPDILVATPGRLWHFIQQ 247
Query: 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR----------------------- 980
G HL L+ +N +V+DE DRMIE+ HF +L+ I +
Sbjct: 248 GEPHLLTLHSVNVVVVDEADRMIEANHFDDLRAIFNWLHSSSSFNNEGKEEEQEDTTHLK 307
Query: 981 -----------VTMTETSQ-----PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP 1024
+ M++ S RQT +FSATLT +L G K +
Sbjct: 308 KTLNLKRKHKLIEMSDHSTDMNRVQRQTLIFSATLTFVHSGALKPGTGSKNHKLLPNNKN 367
Query: 1025 SIKR------LQDLLNIK-SPKIVDLTE---------------KIGITKTLTESKILCKH 1062
++ + L+++ +K S K++DL+ K TL+E ++LC
Sbjct: 368 TMTKKIKLAVLREMFGLKKSAKVIDLSSNHSTDQSVSNPGLICKSTCPDTLSECRLLCPS 427
Query: 1063 DE-KDSYLYYFIL--QHPG-------RTLVFCNSISSVKRLTQLLTML------KCSPLP 1106
E KD L++FI +H G R L+F NS S V+RL +L L S P
Sbjct: 428 QESKDIRLFWFIAFGRHLGSSEYSNRRCLIFLNSKSGVRRLAGVLRQLLSPDAFSVSGYP 487
Query: 1107 -------LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
LHA M Q+QRL+ L+RF+ N ILLA+DVAARGLD+ I VIH+ VPRT+E
Sbjct: 488 SLQYVNVLHADMVQKQRLRALERFQADPNGILLASDVAARGLDLASISWVIHFDVPRTAE 547
Query: 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESV--LSLIK 1216
+YIHRSGRTARAN +G +L+ I +EI + ++ SL++ ++L DF I + L++ +
Sbjct: 548 LYIHRSGRTARANRQGTSLLFISPNEITFWRRISVSLQRTNMELDDFTIQPTTIQLTISE 607
Query: 1217 KRIDLAKSIEYLESK-IKKNRPDNWLHRSGR 1246
+ + LAK I+ E + +K DNW ++ +
Sbjct: 608 QIVKLAKQIDIQEHRNSRKLANDNWFTKAAK 638
Score = 306 bits (783), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 205/624 (32%), Positives = 311/624 (49%), Gaps = 136/624 (21%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
SN++ V++ W N+P+ I++AL G + PT IQ+ +P AL D++G+A TGS
Sbjct: 8 SNSQGCRVEVMGWDSLNLPDYIVKALSDCGLENPTPIQTAAIPPALHGFSDVLGSAPTGS 67
Query: 201 GKTLAFGIPILTGIVN--KLENPTEEDEN--DSGLEEEAEEV------------------ 238
GKTLAFGIP+++ + + L++ T E+E+ +S ++++ EV
Sbjct: 68 GKTLAFGIPLVSKVFSLKTLQSQTCEEESKINSVIDQQKYEVASCVKPCGKKKKRKKETD 127
Query: 239 ----LEELEEESANTTEFVKK---------------------------TRNKLYALILAP 267
L+ +EE NT E RN++Y L+L P
Sbjct: 128 IYSGLDVIEELDVNTGEIRAVHSLGDPVTEDSETLPIIEPPVCLKPNLNRNRVYGLVLVP 187
Query: 268 TRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326
TRELAIQV H+ KY +++ +VGG+S +KQLR+L +CP ILVATPGRLW FIQ
Sbjct: 188 TRELAIQVTQHLRALMKYVDYIRIETIVGGISVDKQLRLLRRCPDILVATPGRLWHFIQQ 247
Query: 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET---SQPRQTMIESGHFP 383
G HL L+ +N +V+DE DRMIE+ HF +L+ I + + + + + ++ H
Sbjct: 248 GEPHLLTLHSVNVVVVDEADRMIEANHFDDLRAIFNWLHSSSSFNNEGKEEEQEDTTHLK 307
Query: 384 ELKNILDRVTMTETSQ--------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP 435
+ N+ + + E S RQT +FSATLT +L G K +
Sbjct: 308 KTLNLKRKHKLIEMSDHSTDMNRVQRQTLIFSATLTFVHSGALKPGTGSKNHKLLPNNKN 367
Query: 436 SIKR------LQDLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 488
++ + L+++ +K S K++DL+ ++++ ++CK D
Sbjct: 368 TMTKKIKLAVLREMFGLKKSAKVIDLSSNHSTDQSVSNPGLICKSTCPD----------- 416
Query: 489 GRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFIL--QHPG 545
TL+E ++LC E KD L++FI +H G
Sbjct: 417 ------------------------------TLSECRLLCPSQESKDIRLFWFIAFGRHLG 446
Query: 546 -------RTLVFCNSISSVKRLTQLLTML------KCSPLP-------LHASMNQRQRLK 585
R L+F NS S V+RL +L L S P LHA M Q+QRL+
Sbjct: 447 SSEYSNRRCLIFLNSKSGVRRLAGVLRQLLSPDAFSVSGYPSLQYVNVLHADMVQKQRLR 506
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
L+RF+ N ILLA+DVAARGLD+ I VIH+ VPRT+E+YIHRSGRTARAN +G ++
Sbjct: 507 ALERFQADPNGILLASDVAARGLDLASISWVIHFDVPRTAELYIHRSGRTARANRQGTSL 566
Query: 646 VLIESDEIPLKTKFNLQEEENNEE 669
+ I +EI + ++ + N E
Sbjct: 567 LFISPNEITFWRRISVSLQRTNME 590
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 9/86 (10%)
Query: 1330 IIDDENLIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTP-VKVACVV 1388
II+ ++PN +RN Y L+L PTRELAIQV H+ KY +++ +V
Sbjct: 164 IIEPPVCLKPNL-----NRNRVY---GLVLVPTRELAIQVTQHLRALMKYVDYIRIETIV 215
Query: 1389 GGMSTEKQLRILNKCPHILVATPGAL 1414
GG+S +KQLR+L +CP ILVATPG L
Sbjct: 216 GGISVDKQLRLLRRCPDILVATPGRL 241
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESV--LSLIKK 1296
++HRSGRTARAN +G +L+ I +EI + ++ SL++ ++L DF I + L++ ++
Sbjct: 549 YIHRSGRTARANRQGTSLLFISPNEITFWRRISVSLQRTNMELDDFTIQPTTIQLTISEQ 608
Query: 1297 RIDLAKSIEYLESK-IKKNRPDNWLEKAAK 1325
+ LAK I+ E + +K DNW KAAK
Sbjct: 609 IVKLAKQIDIQEHRNSRKLANDNWFTKAAK 638
>gi|308810583|ref|XP_003082600.1| RNA Helicase (ISS) [Ostreococcus tauri]
gi|116061069|emb|CAL56457.1| RNA Helicase (ISS) [Ostreococcus tauri]
Length = 1211
Score = 316 bits (809), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 219/628 (34%), Positives = 317/628 (50%), Gaps = 88/628 (14%)
Query: 678 EKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSK---- 733
E +E TV S K+K K+K S+ S T PD++ ++ E+ +E K
Sbjct: 175 ETSEPAAGTVPSIKRKEKQKDRVSKDAKSAKQEVTVKPDEEFIESSEMDVEEDWEKITHK 234
Query: 734 KLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTK 793
+K + K +A + + + D ++ W +F++ I+RA+ GF +PT
Sbjct: 235 SVKAEALAKSNDKNATSSMGALVDGVDLDRGCDISAWFEFDLHPLILRAIQDCGFTSPTP 294
Query: 794 IQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 853
IQ + A R DI+GAA+TGSGKTLAF +PIL ++++ E+ G E E
Sbjct: 295 IQRECLHPATKGRYDIIGAAQTGSGKTLAFALPILHRLLSEGIGLPEDYPLKDGKERE-- 352
Query: 854 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGG 913
VL ++ L ALI+ PTRELA+QV + YT + V C V
Sbjct: 353 -VLPDV-----------------LRALIVCPTRELALQVCAMMRAVAVYTKIDV-CPVVR 393
Query: 914 MSTEKQLR-ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
E++ R LN+ P I+VATPGRLW+ +Q GH +TE +++ V+DE DRMI+ GHF
Sbjct: 394 WYVEREARATLNRMPAIIVATPGRLWDTMQSGHAAVTEFGALSFFVLDEADRMIQRGHFK 453
Query: 973 ELKNILDRV--------------TMTETSQP--------------------------RQT 992
EL +I+ + + E+ P RQT
Sbjct: 454 ELTSIIQNIPEPPRVKRAGGAAKSKEESDAPVDNFAEDEDDVNRAKALALRPKQMLDRQT 513
Query: 993 FVFSATLTHSLKNSLNLKKGQS-KSKKVSKGD--PSIKRLQDLLNI----KSPKIVDLT- 1044
FVFSATLT LKKG++ S K KG P L+ L+ K+VDLT
Sbjct: 514 FVFSATLTVPDSVRRKLKKGKAPTSAKPRKGSAQPQSGSLESLMEAVPFYGRVKMVDLTP 573
Query: 1045 -EKIG--ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 1101
E+ G + ++ ES + C D++DS LYY + HPG T+VF N+IS ++R+ LL +L+
Sbjct: 574 IERKGGAVASSIAESALECTEDDRDSMLYYLLSAHPGMTIVFVNAISCLRRVVALLKILR 633
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQN-----------NSILLATDVAARGLDIPGIEHVI 1150
LHA M QR RLK LDRF+ +S+L+ATDVAARGLD+ G+E VI
Sbjct: 634 VPVEGLHAGMQQRARLKALDRFKAAAAKTTASGGRAAHSVLVATDVAARGLDVKGVELVI 693
Query: 1151 HYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1210
HY +P +++ YIHRSGRT RA+ +G + L+ E Y + SL + L FPI E
Sbjct: 694 HYQIPLSADTYIHRSGRTGRADKQGAAVSLVTPKERQQYYALLKSLNRDGPLDPFPIAEE 753
Query: 1211 VLSLIKKRIDLAKSIEYLESKIKKNRPD 1238
L +R+ + K I+ L +K + D
Sbjct: 754 TLIEASRRLAVTKKIDKLSHTKQKKKAD 781
Score = 286 bits (731), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 212/633 (33%), Positives = 311/633 (49%), Gaps = 120/633 (18%)
Query: 61 EKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEP----SSK 116
E +E TV S K+K K+K S+ S T PD++ ++ E+ +E + K
Sbjct: 175 ETSEPAAGTVPSIKRKEKQKDRVSKDAKSAKQEVTVKPDEEFIESSEMDVEEDWEKITHK 234
Query: 117 KLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTK 176
+K + K +A + + + D ++ W +F++ I+RA+ GF +PT
Sbjct: 235 SVKAEALAKSNDKNATSSMGALVDGVDLDRGCDISAWFEFDLHPLILRAIQDCGFTSPTP 294
Query: 177 IQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236
IQ + A R DI+GAA+TGSGKTLAF +PIL ++++ E+ G E E
Sbjct: 295 IQRECLHPATKGRYDIIGAAQTGSGKTLAFALPILHRLLSEGIGLPEDYPLKDGKERE-- 352
Query: 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGG 296
VL ++ L ALI+ PTRELA+QV + YT + V C V
Sbjct: 353 -VLPDV-----------------LRALIVCPTRELALQVCAMMRAVAVYTKIDV-CPVVR 393
Query: 297 MSTEKQLR-ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 355
E++ R LN+ P I+VATPGRLW+ +Q GH +TE +++ V+DE DRMI+ GHF
Sbjct: 394 WYVEREARATLNRMPAIIVATPGRLWDTMQSGHAAVTEFGALSFFVLDEADRMIQRGHFK 453
Query: 356 ELKNILDRVTMTETSQPRQTMIESG-------------HFPELKNILDRVTMTETSQP-- 400
EL +I+ + +P + G +F E ++ ++R +P
Sbjct: 454 ELTSIIQNI-----PEPPRVKRAGGAAKSKEESDAPVDNFAEDEDDVNRAKALAL-RPKQ 507
Query: 401 ---RQTFVFSATLTHSLKNSLNLKKGQS-KSKKVSKGD--PSIKRLQDLLNIKSPKIVDL 454
RQTFVFSATLT LKKG++ S K KG P L+ L+
Sbjct: 508 MLDRQTFVFSATLTVPDSVRRKLKKGKAPTSAKPRKGSAQPQSGSLESLM---------- 557
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT--E 512
++ +Y GR K+VDLT E
Sbjct: 558 ----------------------EAVPFY------GRV--------------KMVDLTPIE 575
Query: 513 KIG--ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
+ G + ++ ES + C D++DS LYY + HPG T+VF N+IS ++R+ LL +L+
Sbjct: 576 RKGGAVASSIAESALECTEDDRDSMLYYLLSAHPGMTIVFVNAISCLRRVVALLKILRVP 635
Query: 571 PLPLHASMNQRQRLKNLDRFRD-----------QNNSILLATDVAARGLDIPGIEHVIHY 619
LHA M QR RLK LDRF+ +S+L+ATDVAARGLD+ G+E VIHY
Sbjct: 636 VEGLHAGMQQRARLKALDRFKAAAAKTTASGGRAAHSVLVATDVAARGLDVKGVELVIHY 695
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+P +++ YIHRSGRT RA+ +G V L+ E
Sbjct: 696 QIPLSADTYIHRSGRTGRADKQGAAVSLVTPKE 728
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRT RA+ +G + L+ E Y + SL + L FPI E L +R
Sbjct: 702 DTYIHRSGRTGRADKQGAAVSLVTPKERQQYYALLKSLNRDGPLDPFPIAEETLIEASRR 761
Query: 1298 IDLAKSIEYLESKIKKNRPD 1317
+ + K I+ L +K + D
Sbjct: 762 LAVTKKIDKLSHTKQKKKAD 781
Score = 47.0 bits (110), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR-ILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV + YT + V C V E++ R LN+ P I+VATPG L
Sbjct: 360 ALIVCPTRELALQVCAMMRAVAVYTKIDV-CPVVRWYVEREARATLNRMPAIIVATPGRL 418
>gi|302407546|ref|XP_003001608.1| ATP-dependent RNA helicase MAK5 [Verticillium albo-atrum VaMs.102]
gi|261359329|gb|EEY21757.1| ATP-dependent RNA helicase MAK5 [Verticillium albo-atrum VaMs.102]
Length = 787
Score = 315 bits (808), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 231/628 (36%), Positives = 328/628 (52%), Gaps = 84/628 (13%)
Query: 667 NEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTN----DPDDQVNKT 722
+++E + +D E D V +K KL + +V+ L+ TN DP ++ K
Sbjct: 104 DDDEFQGFSDAEAPPDTTPAVDTKPAKLTKGAK----KVAGLTDATNMTDVDPREEAAKA 159
Query: 723 EE---IQSDEPHSKK------------------LKQKKKKKQTYTSANKELLEVDTSNNE 761
E ++P +KK Q KK S LE + E
Sbjct: 160 AENGDTADEKPKNKKDKRREKQEKKKEKLEQKIKAQPVKKDAALESNVFSTLEEAEDDTE 219
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D+ M+EW+ N+ I + + F PT IQ +P + A D++G A TGSGKTL
Sbjct: 220 DL--DMSEWMGLNLSPATIATIRRLKFTKPTTIQCAAIPH-IQAGHDVIGKASTGSGKTL 276
Query: 822 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
AFGIPI+ D LE+ EE ++SA T+ + + L ALI
Sbjct: 277 AFGIPIV----------------DKWLEKNGEE------QDSAMETDDAPEAKAPL-ALI 313
Query: 882 LAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
++PTRELA Q+ NHI L AG V V GG+S KQ R L K I+V TPGRLWE
Sbjct: 314 ISPTRELAHQIMNHIKELCAGLSKQPYVCSVTGGLSVYKQQRQLAKA-DIVVGTPGRLWE 372
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTE------TSQPR 990
+ + KI YLV+DE DR++ GHF E + I LDR E T PR
Sbjct: 373 VLSTNTTVMESFKKIQYLVVDEADRILSEGHFKEAEEIFKALDRNVTEEDDEDEQTLSPR 432
Query: 991 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIG 1048
QT VFSAT L+ L G+ K +S+ + S++ L LN + P+ VD+
Sbjct: 433 QTLVFSATFHKGLQQKL---AGKGKFGLMSE-EESMEYLLKRLNFREEKPEFVDVNPVSQ 488
Query: 1049 ITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPL 1107
+ + L E I C EKD YLY IL +P R +LVF NSIS+V+RLT +L L + LPL
Sbjct: 489 MAEGLKEGMIECGAMEKDLYLYALILLNPNRRSLVFTNSISTVRRLTPMLANLNLNALPL 548
Query: 1108 HASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
H+ M Q+ RL++++RF + SIL+ATDVAARGLDIPGI+ VIHYHVPR +++Y+HR
Sbjct: 549 HSQMPQKARLRSVERFTSTKPGTASILIATDVAARGLDIPGIDQVIHYHVPRAADMYVHR 608
Query: 1165 SGRTARANNEGLTLVLIESDEIP----LYIKMFN--SLEKKVDLPDFPIDESVLSLIKKR 1218
SGRTARA GL+++L +E+ L K+ + + + K + ID + S +K R
Sbjct: 609 SGRTARAATSGLSILLCAPEEVTPTRRLAAKVHHEQAGKNKYLIRTVDIDRKLASRLKPR 668
Query: 1219 IDLAKSI-EYLESKIKKNRPDNWLHRSG 1245
+DLAK + + + +K K + D+W+ ++
Sbjct: 669 VDLAKKLADAVLAKEKGGKDDDWVKKAA 696
Score = 260 bits (664), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 192/529 (36%), Positives = 252/529 (47%), Gaps = 120/529 (22%)
Query: 136 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 195
LE + ED+ M+EW+ N+ I + + F PT IQ +P + A D++G
Sbjct: 211 LEEAEDDTEDL--DMSEWMGLNLSPATIATIRRLKFTKPTTIQCAAIPH-IQAGHDVIGK 267
Query: 196 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 255
A TGSGKTLAFGIPI+ D LE+ EE ++SA T+ +
Sbjct: 268 ASTGSGKTLAFGIPIV----------------DKWLEKNGEE------QDSAMETDDAPE 305
Query: 256 TRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
+ L ALI++PTRELA Q+ NHI L AG V V GG+S KQ R L K I+
Sbjct: 306 AKAPL-ALIISPTRELAHQIMNHIKELCAGLSKQPYVCSVTGGLSVYKQQRQLAKA-DIV 363
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
V TPGRLWE + + KI YLV+DE DR++
Sbjct: 364 VGTPGRLWEVLSTNTTVMESFKKIQYLVVDEADRILSE---------------------- 401
Query: 374 QTMIESGHFPELKNI---LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 430
GHF E + I LDR E + QT TL S KG
Sbjct: 402 ------GHFKEAEEIFKALDRNVTEEDDEDEQTLSPRQTLVF----SATFHKG------- 444
Query: 431 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
LQ L K K G L +E YL
Sbjct: 445 ---------LQQKLAGKG--------KFG----------LMSEEESMEYLL--------- 468
Query: 491 TLCEEIQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-T 547
LN + P+ VD+ + + L E I C EKD YLY IL +P R +
Sbjct: 469 -------KRLNFREEKPEFVDVNPVSQMAEGLKEGMIECGAMEKDLYLYALILLNPNRRS 521
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVA 604
LVF NSIS+V+RLT +L L + LPLH+ M Q+ RL++++RF + SIL+ATDVA
Sbjct: 522 LVFTNSISTVRRLTPMLANLNLNALPLHSQMPQKARLRSVERFTSTKPGTASILIATDVA 581
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
ARGLDIPGI+ VIHYHVPR +++Y+HRSGRTARA GL+++L +E+
Sbjct: 582 ARGLDIPGIDQVIHYHVPRAADMYVHRSGRTARAATSGLSILLCAPEEV 630
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 1317 DNWLEKAAKDMDIIIDDENLIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHI--L 1374
D WLEK ++ D ++ ++ + L ALI++PTRELA Q+ NHI L
Sbjct: 284 DKWLEKNGEEQDSAMETDDAPEAKAPL------------ALIISPTRELAHQIMNHIKEL 331
Query: 1375 DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AG V V GG+S KQ R L K I+V TPG L
Sbjct: 332 CAGLSKQPYVCSVTGGLSVYKQQRQLAKA-DIVVGTPGRL 370
>gi|388579536|gb|EIM19858.1| P-loop containing nucleoside triphosphate hydrolase protein [Wallemia
sebi CBS 633.66]
Length = 711
Score = 313 bits (802), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 200/515 (38%), Positives = 281/515 (54%), Gaps = 81/515 (15%)
Query: 766 QMAEWVKFNI------PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
++ EW N+ P ++R+L++ TPT IQ + ++++ RKD++G AETGSGK
Sbjct: 133 KLPEWSADNLSIAKDLPSALLRSLHENSIVTPTPIQKESLKASMI-RKDVIGIAETGSGK 191
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879
TLA+G+PIL+ IV E+ EES L A
Sbjct: 192 TLAYGLPILSRIVEG-----------------------EIPEES-------------LAA 215
Query: 880 LILAPTRELAIQVQNHILDAGKYTP--------VKVACVVGGMSTEKQLRILNKCPHILV 931
L+L PTRELA+QV + K+ P V VA VVGGMS +KQ R L + +I+V
Sbjct: 216 LVLCPTRELALQVAGEL---KKFAPRVQDITRRVNVATVVGGMSIQKQKRQL-QYANIVV 271
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL------------- 978
ATPGRLWE + + +LVIDE DRMIE+GHF E+ IL
Sbjct: 272 ATPGRLWEVLLDDGTLAKRAIRSQFLVIDEADRMIEAGHFEEMDKILRMTQRTSKSSTAA 331
Query: 979 --DRVTMTETSQPR--------QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 1028
D TE P QT VFSATL+ L+ +L K+ KK + S+
Sbjct: 332 FQDEFESTEIGLPEEVPATDDMQTMVFSATLSKDLQQNLKRKRKAGSGKKKQEVKSSLDD 391
Query: 1029 LQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 1086
L L+ + P I+DL+ + TL E+++ C +KD YLYYF+L++PG+TLVF +S
Sbjct: 392 LLMRLDFRDLEPSIIDLSPVNKVVSTLEEARVDCLSTDKDLYLYYFLLRYPGKTLVFVSS 451
Query: 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 1146
I +++R+ LL LK PLH+ + QRQRL+N DRF+ N++++ATDVAARGLD+P +
Sbjct: 452 IDAIRRMIPLLETLKQHVFPLHSGLQQRQRLRNFDRFKSLPNAVMIATDVAARGLDVPSV 511
Query: 1147 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206
+HVIHY VPRT++ YIHRSGRTARA GL ++ + +E + + L + L
Sbjct: 512 DHVIHYQVPRTADAYIHRSGRTARAQRSGLAVMFVCPEERRMSNDLLKQLNRDNGLSHLQ 571
Query: 1207 IDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NW 1240
I ++L +K RI+LA IE K K + D NW
Sbjct: 572 IQFNILDQLKARINLATKIEATRHKTTKAKFDSNW 606
Score = 280 bits (717), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 192/521 (36%), Positives = 270/521 (51%), Gaps = 120/521 (23%)
Query: 149 QMAEWVKFNI------PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
++ EW N+ P ++R+L++ TPT IQ + ++++ RKD++G AETGSGK
Sbjct: 133 KLPEWSADNLSIAKDLPSALLRSLHENSIVTPTPIQKESLKASMI-RKDVIGIAETGSGK 191
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262
TLA+G+PIL+ IV E+ EES L A
Sbjct: 192 TLAYGLPILSRIVEG-----------------------EIPEES-------------LAA 215
Query: 263 LILAPTRELAIQVQNHILDAGKYTP--------VKVACVVGGMSTEKQLRILNKCPHILV 314
L+L PTRELA+QV + K+ P V VA VVGGMS +KQ R L + +I+V
Sbjct: 216 LVLCPTRELALQVAGEL---KKFAPRVQDITRRVNVATVVGGMSIQKQKRQL-QYANIVV 271
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRLWE + + +LVIDE DRMIE+GHF E+ IL MT+ +
Sbjct: 272 ATPGRLWEVLLDDGTLAKRAIRSQFLVIDEADRMIEAGHFEEMDKIL---RMTQRTSKSS 328
Query: 375 TMIESGHFPELK-NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK--GQSKSKKVS 431
T F + + + V T+ Q T VFSATL+ L+ +L K+ G K K+
Sbjct: 329 TAAFQDEFESTEIGLPEEVPATDDMQ---TMVFSATLSKDLQQNLKRKRKAGSGKKKQEV 385
Query: 432 KGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
K L DLL
Sbjct: 386 KSS-----LDDLL----------------------------------------------- 393
Query: 492 LCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 551
+ + +DL P I+DL+ + TL E+++ C +KD YLYYF+L++PG+TLVF
Sbjct: 394 MRLDFRDL----EPSIIDLSPVNKVVSTLEEARVDCLSTDKDLYLYYFLLRYPGKTLVFV 449
Query: 552 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 611
+SI +++R+ LL LK PLH+ + QRQRL+N DRF+ N++++ATDVAARGLD+P
Sbjct: 450 SSIDAIRRMIPLLETLKQHVFPLHSGLQQRQRLRNFDRFKSLPNAVMIATDVAARGLDVP 509
Query: 612 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
++HVIHY VPRT++ YIHRSGRTARA GL V+ + +E
Sbjct: 510 SVDHVIHYQVPRTADAYIHRSGRTARAQRSGLAVMFVCPEE 550
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA GL ++ + +E + + L + L I ++L +K R
Sbjct: 524 DAYIHRSGRTARAQRSGLAVMFVCPEERRMSNDLLKQLNRDNGLSHLQIQFNILDQLKAR 583
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDEN 1335
I+LA IE K K + D NW ++AA + + +D ++
Sbjct: 584 INLATKIEATRHKTTKAKFDSNWEKEAADALGVDLDSDH 622
Score = 53.5 bits (127), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 42/70 (60%), Gaps = 12/70 (17%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTP--------VKVACVVGGMSTEKQLRILNKCP 1404
S AL+L PTRELA+QV + K+ P V VA VVGGMS +KQ R L +
Sbjct: 212 SLAALVLCPTRELALQVAGEL---KKFAPRVQDITRRVNVATVVGGMSIQKQKRQL-QYA 267
Query: 1405 HILVATPGAL 1414
+I+VATPG L
Sbjct: 268 NIVVATPGRL 277
>gi|429855665|gb|ELA30611.1| ATP-dependent RNA helicase mak5 [Colletotrichum gloeosporioides Nara
gc5]
Length = 749
Score = 311 bits (796), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 201/514 (39%), Positives = 277/514 (53%), Gaps = 65/514 (12%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M++W+ + I+ A+ + F P+ IQ +P +LA D++G A TGSGKTLAF IP
Sbjct: 189 MSQWIDLGLSPAIVSAIAKLKFTKPSNIQKSSIPE-ILAGHDVIGKASTGSGKTLAFSIP 247
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
I+ + K + E K T + ALIL+PTR
Sbjct: 248 IVEDWIEKFDAKDGE-----------------------------KDTEHAPTALILSPTR 278
Query: 887 ELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
ELA Q+ NHI L AG V V GG+S KQ R L K I++ TPGRLWE I
Sbjct: 279 ELAHQITNHIKNLCAGLTNAPFVCSVTGGLSVFKQQRQLAKA-DIVIGTPGRLWEVISSS 337
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILD---RVTMTETSQ-----PRQTFVFS 996
L+ KI YLV+DE DR++ GHF E ILD R + E PRQT VFS
Sbjct: 338 TELLSGFKKIRYLVVDEADRLLSEGHFKEAGEILDALDREALDEDEDKQNLTPRQTLVFS 397
Query: 997 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLT 1054
AT L+ L G+ K +S+ + S++ L LN + PK++D+ + L
Sbjct: 398 ATFHKGLQQKL---AGKGKWGLMSE-EESMEYLLKRLNFREEKPKLIDVNPVAQMAAGLK 453
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
E I C EKD YLY +L +P R TLVF NSIS+V+RLT L L + L LH+ M Q
Sbjct: 454 EGLIECGAMEKDLYLYTVLLLNPNRRTLVFTNSISAVRRLTPFLQNLNLNALALHSQMPQ 513
Query: 1114 RQRLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
+ RL++++RF ++ S+L+ATDVAARGLDIPGI+ V+HYHVPR +++Y+HRSGRTAR
Sbjct: 514 KARLRSVERFTATKEGTTSVLIATDVAARGLDIPGIDQVVHYHVPRAADMYVHRSGRTAR 573
Query: 1171 ANNEGLTLVLIESDEI------PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
A GL+++L +E+ + + +KK + ID V S +K R+DLAK
Sbjct: 574 AERTGLSIILCGPEEVVPTRRLAAKVHAEQASKKKYLMRTIDIDRRVASKLKPRVDLAKK 633
Query: 1225 I-EYLESKIKKNRPDNWLHRSGRTARANNEGLTL 1257
+ + +K K N+ D+W ARA E L +
Sbjct: 634 LADATLAKEKGNKEDDW-------ARAAAEELGV 660
Score = 249 bits (637), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 171/511 (33%), Positives = 238/511 (46%), Gaps = 117/511 (22%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M++W+ + I+ A+ + F P+ IQ +P +LA D++G A TGSGKTLAF IP
Sbjct: 189 MSQWIDLGLSPAIVSAIAKLKFTKPSNIQKSSIPE-ILAGHDVIGKASTGSGKTLAFSIP 247
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
I+ + K + E K T + ALIL+PTR
Sbjct: 248 IVEDWIEKFDAKDGE-----------------------------KDTEHAPTALILSPTR 278
Query: 270 ELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
ELA Q+ NHI L AG V V GG+S KQ R L K I++ TPGRLWE I
Sbjct: 279 ELAHQITNHIKNLCAGLTNAPFVCSVTGGLSVFKQQRQLAKA-DIVIGTPGRLWEVISSS 337
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
L+ KI YLV+DE DR++ GHF E ILD + +
Sbjct: 338 TELLSGFKKIRYLVVDEADRLLSEGHFKEAGEILDALD--------------------RE 377
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
LD + PRQT VFSAT L+ L G+ K +S+ + S++ L LN +
Sbjct: 378 ALDEDEDKQNLTPRQTLVFSATFHKGLQQKL---AGKGKWGLMSE-EESMEYLLKRLNFR 433
Query: 448 S--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSP 505
PK++D+ + L E I C EKD YLY +L +P R
Sbjct: 434 EEKPKLIDVNPVAQMAAGLKEGLIECGAMEKDLYLYTVLLLNPNR--------------- 478
Query: 506 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 565
+ + T I + LT L
Sbjct: 479 RTLVFTNSISAVRRLT----------------------------------------PFLQ 498
Query: 566 MLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHVIHYHVP 622
L + L LH+ M Q+ RL++++RF ++ S+L+ATDVAARGLDIPGI+ V+HYHVP
Sbjct: 499 NLNLNALALHSQMPQKARLRSVERFTATKEGTTSVLIATDVAARGLDIPGIDQVVHYHVP 558
Query: 623 RTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
R +++Y+HRSGRTARA GL+++L +E+
Sbjct: 559 RAADMYVHRSGRTARAERTGLSIILCGPEEV 589
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
ALIL+PTRELA Q+ NHI L AG V V GG+S KQ R L K I++ TPG
Sbjct: 271 ALILSPTRELAHQITNHIKNLCAGLTNAPFVCSVTGGLSVFKQQRQLAKA-DIVIGTPGR 329
Query: 1414 L 1414
L
Sbjct: 330 L 330
>gi|358057374|dbj|GAA96723.1| hypothetical protein E5Q_03395 [Mixia osmundae IAM 14324]
Length = 750
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 187/544 (34%), Positives = 284/544 (52%), Gaps = 92/544 (16%)
Query: 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSM---VMPSALLARKDIVGAAETGSGKT 820
F + +V ++ + A+ + GF PT IQ +M A KDI+G A+TGSGKT
Sbjct: 131 FAHLPGYVPQSLHPALAHAMLELGFSKPTPIQRATFDIMLGADAVLKDIMGIAQTGSGKT 190
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LA+G+PIL I + N K+ KL AL
Sbjct: 191 LAYGLPILDQIFRQ------------------------------NARWPSKEQPRKLTAL 220
Query: 881 ILAPTRELAIQVQNHILDA----------------GKYTPVKVACVVGGMSTEKQLRIL- 923
IL PTRELA+QV+ H+ G Y + VVGG+S KQ R L
Sbjct: 221 ILLPTRELAMQVKTHLATVITNASSAGIDTKGKGKGPYPFANIVAVVGGISVLKQRRQLA 280
Query: 924 -NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV- 981
++ I+VATPGRLWE I ++ ++YLV+DE DRM+++GHF EL ILD
Sbjct: 281 VDRGIDIIVATPGRLWEMIDDDDDLARKIAALDYLVLDEADRMVQAGHFVELDKILDLTR 340
Query: 982 --------------------------------TMTETSQPR-QTFVFSATLTHSLKNSLN 1008
++ PR +T +FSATL+ L+ +L+
Sbjct: 341 RGNSSSISHDSSAPDVDIADQDKPDDQAFAEQSVRPNGNPRMRTMIFSATLSKDLQVNLS 400
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLL-----NIKSPKIVDLTEKIGITKTLTESKILCKHD 1063
+ ++ + + K S + DLL P +++L+ G TL E + C
Sbjct: 401 IPHLRNL-RAIRKAGGSQGAIDDLLLKIDFRDPDPALINLSSMQGTVDTLQECFVDCMMT 459
Query: 1064 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
EKD YLYYF++++PGRT+VF ++I ++RL + L+ +PLH+ M Q+ RL++L++F
Sbjct: 460 EKDLYLYYFLIRYPGRTIVFLSAIDGIRRLQPIFKALRMQVVPLHSGMQQKARLRSLEQF 519
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ ++ILLATDVAARGLD+P ++HV+HY +PR++++YIHRSGRTARA EG++L L
Sbjct: 520 KANKHAILLATDVAARGLDVPLVDHVVHYQIPRSADVYIHRSGRTARAGREGVSLQLCSP 579
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLH 1242
DE + S+ K+ L + PI+ S+L ++ R+DLA+ I+ + K K D +WL
Sbjct: 580 DEKVAQRALLRSINKEKALVELPIEHSILETLRDRVDLARKIDSAQHKANKETHDQDWLR 639
Query: 1243 RSGR 1246
++ +
Sbjct: 640 KAAK 643
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 202/639 (31%), Positives = 303/639 (47%), Gaps = 140/639 (21%)
Query: 43 LQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTN-DPDDQ 101
L E+ N AEA+ EK S KK + Q+ + +A+T+ PDD
Sbjct: 54 LDESGNKHFRFLVAEAEPEKETATPTAKPSSIKKRTKDTKAEQIRHEDDTASTSAQPDDA 113
Query: 102 VNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPET 161
EP+S A++ L E D F + +V ++
Sbjct: 114 ----------EPASGT-----------ADADQLLREFD-------FAHLPGYVPQSLHPA 145
Query: 162 IIRALYQKGFKTPTKIQSM---VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
+ A+ + GF PT IQ +M A KDI+G A+TGSGKTLA+G+PIL I +
Sbjct: 146 LAHAMLELGFSKPTPIQRATFDIMLGADAVLKDIMGIAQTGSGKTLAYGLPILDQIFRQ- 204
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
N K+ KL ALIL PTRELA+QV+ H
Sbjct: 205 -----------------------------NARWPSKEQPRKLTALILLPTRELAMQVKTH 235
Query: 279 ILDA----------------GKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPGRL 320
+ G Y + VVGG+S KQ R L ++ I+VATPGRL
Sbjct: 236 LATVITNASSAGIDTKGKGKGPYPFANIVAVVGGISVLKQRRQLAVDRGIDIIVATPGRL 295
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD------RVTMTETSQPRQ 374
WE I ++ ++YLV+DE DRM+++GHF EL ILD +++ S
Sbjct: 296 WEMIDDDDDLARKIAALDYLVLDEADRMVQAGHFVELDKILDLTRRGNSSSISHDSSAPD 355
Query: 375 TMIESGHFPELKNILDRVTMTETSQPR-QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
I P+ + ++ ++ PR +T +FSATL+ L+ +L
Sbjct: 356 VDIADQDKPDDQAFAEQ-SVRPNGNPRMRTMIFSATLSKDLQVNL--------------- 399
Query: 434 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
SI L++L I+ K G ++ + +L K D +D
Sbjct: 400 --SIPHLRNLRAIR---------KAGGSQGAIDD-LLLKIDFRDP--------------- 432
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 553
P +++L+ G TL E + C EKD YLYYF++++PGRT+VF ++
Sbjct: 433 ----------DPALINLSSMQGTVDTLQECFVDCMMTEKDLYLYYFLIRYPGRTIVFLSA 482
Query: 554 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613
I ++RL + L+ +PLH+ M Q+ RL++L++F+ ++ILLATDVAARGLD+P +
Sbjct: 483 IDGIRRLQPIFKALRMQVVPLHSGMQQKARLRSLEQFKANKHAILLATDVAARGLDVPLV 542
Query: 614 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+HV+HY +PR++++YIHRSGRTARA EG+++ L DE
Sbjct: 543 DHVVHYQIPRSADVYIHRSGRTARAGREGVSLQLCSPDE 581
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA EG++L L DE + S+ K+ L + PI+ S+L ++ R
Sbjct: 555 DVYIHRSGRTARAGREGVSLQLCSPDEKVAQRALLRSINKEKALVELPIEHSILETLRDR 614
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDE 1334
+DLA+ I+ + K K D +WL KAAK+M+I ID E
Sbjct: 615 VDLARKIDSAQHKANKETHDQDWLRKAAKEMEIDIDSE 652
Score = 47.0 bits (110), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 18/77 (23%)
Query: 1356 ALILAPTRELAIQVQNHILDA----------------GKYTPVKVACVVGGMSTEKQLRI 1399
ALIL PTRELA+QV+ H+ G Y + VVGG+S KQ R
Sbjct: 219 ALILLPTRELAMQVKTHLATVITNASSAGIDTKGKGKGPYPFANIVAVVGGISVLKQRRQ 278
Query: 1400 L--NKCPHILVATPGAL 1414
L ++ I+VATPG L
Sbjct: 279 LAVDRGIDIIVATPGRL 295
>gi|358057375|dbj|GAA96724.1| hypothetical protein E5Q_03394 [Mixia osmundae IAM 14324]
Length = 751
Score = 310 bits (795), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 187/544 (34%), Positives = 284/544 (52%), Gaps = 92/544 (16%)
Query: 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSM---VMPSALLARKDIVGAAETGSGKT 820
F + +V ++ + A+ + GF PT IQ +M A KDI+G A+TGSGKT
Sbjct: 131 FAHLPGYVPQSLHPALAHAMLELGFSKPTPIQRATFDIMLGADAVLKDIMGIAQTGSGKT 190
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LA+G+PIL I + N K+ KL AL
Sbjct: 191 LAYGLPILDQIFRQ------------------------------NARWPSKEQPRKLTAL 220
Query: 881 ILAPTRELAIQVQNHILDA----------------GKYTPVKVACVVGGMSTEKQLRIL- 923
IL PTRELA+QV+ H+ G Y + VVGG+S KQ R L
Sbjct: 221 ILLPTRELAMQVKTHLATVITNASSAGIDTKGKGKGPYPFANIVAVVGGISVLKQRRQLA 280
Query: 924 -NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV- 981
++ I+VATPGRLWE I ++ ++YLV+DE DRM+++GHF EL ILD
Sbjct: 281 VDRGIDIIVATPGRLWEMIDDDDDLARKIAALDYLVLDEADRMVQAGHFVELDKILDLTR 340
Query: 982 --------------------------------TMTETSQPR-QTFVFSATLTHSLKNSLN 1008
++ PR +T +FSATL+ L+ +L+
Sbjct: 341 RGNSSSISHDSSAPDVDIADQDKPDDQAFAEQSVRPNGNPRMRTMIFSATLSKDLQVNLS 400
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLL-----NIKSPKIVDLTEKIGITKTLTESKILCKHD 1063
+ ++ + + K S + DLL P +++L+ G TL E + C
Sbjct: 401 IPHLRNL-RAIRKAGGSQGAIDDLLLKIDFRDPDPALINLSSMQGTVDTLQECFVDCMMT 459
Query: 1064 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
EKD YLYYF++++PGRT+VF ++I ++RL + L+ +PLH+ M Q+ RL++L++F
Sbjct: 460 EKDLYLYYFLIRYPGRTIVFLSAIDGIRRLQPIFKALRMQVVPLHSGMQQKARLRSLEQF 519
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ ++ILLATDVAARGLD+P ++HV+HY +PR++++YIHRSGRTARA EG++L L
Sbjct: 520 KANKHAILLATDVAARGLDVPLVDHVVHYQIPRSADVYIHRSGRTARAGREGVSLQLCSP 579
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLH 1242
DE + S+ K+ L + PI+ S+L ++ R+DLA+ I+ + K K D +WL
Sbjct: 580 DEKVAQRALLRSINKEKALVELPIEHSILETLRDRVDLARKIDSAQHKANKETHDQDWLR 639
Query: 1243 RSGR 1246
++ +
Sbjct: 640 KAAK 643
Score = 275 bits (703), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 202/639 (31%), Positives = 303/639 (47%), Gaps = 140/639 (21%)
Query: 43 LQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTN-DPDDQ 101
L E+ N AEA+ EK S KK + Q+ + +A+T+ PDD
Sbjct: 54 LDESGNKHFRFLVAEAEPEKETATPTAKPSSIKKRTKDTKAEQIRHEDDTASTSAQPDDA 113
Query: 102 VNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPET 161
EP+S A++ L E D F + +V ++
Sbjct: 114 ----------EPASGT-----------ADADQLLREFD-------FAHLPGYVPQSLHPA 145
Query: 162 IIRALYQKGFKTPTKIQSM---VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
+ A+ + GF PT IQ +M A KDI+G A+TGSGKTLA+G+PIL I +
Sbjct: 146 LAHAMLELGFSKPTPIQRATFDIMLGADAVLKDIMGIAQTGSGKTLAYGLPILDQIFRQ- 204
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
N K+ KL ALIL PTRELA+QV+ H
Sbjct: 205 -----------------------------NARWPSKEQPRKLTALILLPTRELAMQVKTH 235
Query: 279 ILDA----------------GKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPGRL 320
+ G Y + VVGG+S KQ R L ++ I+VATPGRL
Sbjct: 236 LATVITNASSAGIDTKGKGKGPYPFANIVAVVGGISVLKQRRQLAVDRGIDIIVATPGRL 295
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD------RVTMTETSQPRQ 374
WE I ++ ++YLV+DE DRM+++GHF EL ILD +++ S
Sbjct: 296 WEMIDDDDDLARKIAALDYLVLDEADRMVQAGHFVELDKILDLTRRGNSSSISHDSSAPD 355
Query: 375 TMIESGHFPELKNILDRVTMTETSQPR-QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
I P+ + ++ ++ PR +T +FSATL+ L+ +L
Sbjct: 356 VDIADQDKPDDQAFAEQ-SVRPNGNPRMRTMIFSATLSKDLQVNL--------------- 399
Query: 434 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
SI L++L I+ K G ++ + +L K D +D
Sbjct: 400 --SIPHLRNLRAIR---------KAGGSQGAIDD-LLLKIDFRDP--------------- 432
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 553
P +++L+ G TL E + C EKD YLYYF++++PGRT+VF ++
Sbjct: 433 ----------DPALINLSSMQGTVDTLQECFVDCMMTEKDLYLYYFLIRYPGRTIVFLSA 482
Query: 554 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613
I ++RL + L+ +PLH+ M Q+ RL++L++F+ ++ILLATDVAARGLD+P +
Sbjct: 483 IDGIRRLQPIFKALRMQVVPLHSGMQQKARLRSLEQFKANKHAILLATDVAARGLDVPLV 542
Query: 614 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+HV+HY +PR++++YIHRSGRTARA EG+++ L DE
Sbjct: 543 DHVVHYQIPRSADVYIHRSGRTARAGREGVSLQLCSPDE 581
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA EG++L L DE + S+ K+ L + PI+ S+L ++ R
Sbjct: 555 DVYIHRSGRTARAGREGVSLQLCSPDEKVAQRALLRSINKEKALVELPIEHSILETLRDR 614
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDE 1334
+DLA+ I+ + K K D +WL KAAK+M+I ID E
Sbjct: 615 VDLARKIDSAQHKANKETHDQDWLRKAAKEMEIDIDSE 652
Score = 47.0 bits (110), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 18/77 (23%)
Query: 1356 ALILAPTRELAIQVQNHILDA----------------GKYTPVKVACVVGGMSTEKQLRI 1399
ALIL PTRELA+QV+ H+ G Y + VVGG+S KQ R
Sbjct: 219 ALILLPTRELAMQVKTHLATVITNASSAGIDTKGKGKGPYPFANIVAVVGGISVLKQRRQ 278
Query: 1400 L--NKCPHILVATPGAL 1414
L ++ I+VATPG L
Sbjct: 279 LAVDRGIDIIVATPGRL 295
>gi|440296216|gb|ELP89056.1| ATP-dependent RNA helicase mak5, putative [Entamoeba invadens IP1]
Length = 606
Score = 308 bits (790), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 180/477 (37%), Positives = 278/477 (58%), Gaps = 54/477 (11%)
Query: 753 LEVDTSNNEDMFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVG 811
+E + ++ D++++M EW K + I TI+RALY GF PT+IQ +P AL ++KD++G
Sbjct: 47 MEEEPISDADLYIEMKEWRKLYKIDITILRALYDLGFIYPTEIQKFAIPKALTSQKDLIG 106
Query: 812 AAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 871
+A TGSGKTL+F IP++ + E+ + +TT+
Sbjct: 107 SAPTGSGKTLSFLIPLVQRFI---------------------------EKGTFDTTQ--- 136
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV-GGMSTEKQLRILNKCPHIL 930
LIL PTRELA+Q+++H+ KY P +CVV GG+++ KQ+R+L + P I+
Sbjct: 137 -------CLILVPTRELAVQIRDHLQKLTKYLPRVTSCVVVGGLASVKQVRLLLQEPTIV 189
Query: 931 VATPGRLWEFIQLGHFH-LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
+ TPGR++E L L + YLV+DE DRM+E GHF ELK+++ V+ E
Sbjct: 190 IGTPGRIFELYNNQDTPVLKTLPSLPYLVVDEADRMVEPGHFSELKDLVTVVSNAE---- 245
Query: 990 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 1049
+QTFVFSAT+ + + + + K+ + ++ ++ + LN+K ++VD++
Sbjct: 246 KQTFVFSATM----QLAAEMWAAKFKTTQTTQ----MEMMVSALNMKDTELVDISTPEQT 297
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
K + E KI +D L+Y + + +PG+TLVF N+I+ VKR+ LL M+ L+
Sbjct: 298 AKEMEEKKITVTGKLRDEALFYVLTKLNPGKTLVFVNAITMVKRVVPLLQMVNIKVSSLY 357
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
+ M QRL+N++RF N++L+ TD+AARGLDI I+ VIHY +PRTSE+Y+HRSGRT
Sbjct: 358 SGMEMAQRLRNIERFTKNENTVLVTTDIAARGLDIDDIKTVIHYDLPRTSELYVHRSGRT 417
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
ARA +G +V + +E Y+KM +L KK D P ID + KK + LA I
Sbjct: 418 ARAGRKGTCIVFVVKEEKGKYLKMLENL-KKSDFPQIKIDAQGFVMTKKIMVLANKI 473
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 186/362 (51%), Gaps = 81/362 (22%)
Query: 136 LEVDTSNNEDMFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVG 194
+E + ++ D++++M EW K + I TI+RALY GF PT+IQ +P AL ++KD++G
Sbjct: 47 MEEEPISDADLYIEMKEWRKLYKIDITILRALYDLGFIYPTEIQKFAIPKALTSQKDLIG 106
Query: 195 AAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254
+A TGSGKTL+F IP++ + E+ + +TT+
Sbjct: 107 SAPTGSGKTLSFLIPLVQRFI---------------------------EKGTFDTTQ--- 136
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV-GGMSTEKQLRILNKCPHIL 313
LIL PTRELA+Q+++H+ KY P +CVV GG+++ KQ+R+L + P I+
Sbjct: 137 -------CLILVPTRELAVQIRDHLQKLTKYLPRVTSCVVVGGLASVKQVRLLLQEPTIV 189
Query: 314 VATPGRLWEFIQLGHFH-LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
+ TPGR++E L L + YLV+DE DRM+E GHF ELK+++ V+ E
Sbjct: 190 IGTPGRIFELYNNQDTPVLKTLPSLPYLVVDEADRMVEPGHFSELKDLVTVVSNAE---- 245
Query: 373 RQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK 432
+QTFVFSAT ++ + + + K+ + ++
Sbjct: 246 ----------------------------KQTFVFSAT----MQLAAEMWAAKFKTTQTTQ 273
Query: 433 GDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRT 491
++ + LN+K ++VD++ K + E KI +D L+Y + + +PG+T
Sbjct: 274 ----MEMMVSALNMKDTELVDISTPEQTAKEMEEKKITVTGKLRDEALFYVLTKLNPGKT 329
Query: 492 LC 493
L
Sbjct: 330 LV 331
Score = 142 bits (358), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRTLV 549
T E + LN+K ++VD++ K + E KI +D L+Y + + +PG+TLV
Sbjct: 272 TQMEMMVSALNMKDTELVDISTPEQTAKEMEEKKITVTGKLRDEALFYVLTKLNPGKTLV 331
Query: 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 609
F N+I+ VKR+ LL M+ L++ M QRL+N++RF N++L+ TD+AARGLD
Sbjct: 332 FVNAITMVKRVVPLLQMVNIKVSSLYSGMEMAQRLRNIERFTKNENTVLVTTDIAARGLD 391
Query: 610 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
I I+ VIHY +PRTSE+Y+HRSGRTARA +G +V + +E
Sbjct: 392 IDDIKTVIHYDLPRTSELYVHRSGRTARAGRKGTCIVFVVKEE 434
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVAC-VVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL PTRELA+Q+++H+ KY P +C VVGG+++ KQ+R+L + P I++ TPG +
Sbjct: 137 CLILVPTRELAVQIRDHLQKLTKYLPRVTSCVVVGGLASVKQVRLLLQEPTIVIGTPGRI 196
>gi|340514381|gb|EGR44644.1| predicted protein [Trichoderma reesei QM6a]
Length = 734
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 198/504 (39%), Positives = 279/504 (55%), Gaps = 66/504 (13%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
WV+ N+ ++ A+ + GF PT IQ +P +LA +D++G A+TGSGKTLAFGIPI+
Sbjct: 172 WVELNLSTRVVSAIAKLGFSKPTLIQQKTIPE-ILAGEDVIGKAQTGSGKTLAFGIPIV- 229
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
E EL + AN R A++L+PTRELA
Sbjct: 230 ------------------------EKWLELYVDKANAK------REGPTAVVLSPTRELA 259
Query: 890 IQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
Q+ +HI L G T V V GG+S +KQ R L K I++ATPGRLWE + G
Sbjct: 260 KQLSDHIKALCDGLPTAPYVCTVTGGLSIQKQQRQLEKA-DIVIATPGRLWEVLD-GDMS 317
Query: 948 LTELY-KINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQ-------PRQTFVFS 996
L + + KI +LV+DE DR+ ++G F E ++I LDR PRQT VFS
Sbjct: 318 LQDSFTKIKFLVVDEADRLFKAGQFKEAEDIIGALDRRDPEADEDDEGDDLPPRQTLVFS 377
Query: 997 ATLTHSLKNSLNLKKGQSKSKKVSKG--DPSIKRLQDLLNIKS-PKIVDLTEKIGITKTL 1053
AT +L++ L G+ K K + G + ++ L L + PK +D+ + + L
Sbjct: 378 ATFDKNLQSKL---AGRGKGPKAAAGSDEEKMEYLMKCLKFRGEPKYIDVNPVSQMAEGL 434
Query: 1054 TESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
E I C EKD YLY ++ +PGR TLVF NSIS+V+RLT LL L S LPLH+ M
Sbjct: 435 KEGLIECGAMEKDLYLYTVLVLNPGRRTLVFTNSISAVRRLTPLLQNLGLSALPLHSQMI 494
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q+ RL++++RF NSIL+ATDVAARGLDI ++ V+HYHVPR+++ YIHRSGRTAR +
Sbjct: 495 QKARLRSIERFAAAKNSILVATDVAARGLDIKEVDQVLHYHVPRSADTYIHRSGRTARGD 554
Query: 1173 NEGLTLVLIESDEI----PLYIKMFNSLEKKVD-------LPDFPIDESVLSLIKKRIDL 1221
G++++L DE+ L K+ + E + ID + S +K R+DL
Sbjct: 555 RSGVSVILCSPDEVLPTRRLASKVHSEREGGGGGVKREHFIETLSIDRKIASRLKTRVDL 614
Query: 1222 AKSI-EYLESKIKKNRPDNWLHRS 1244
AK I + + +K K + D WL +
Sbjct: 615 AKRIADAVLAKEKGHSEDTWLRNA 638
Score = 274 bits (700), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 183/505 (36%), Positives = 253/505 (50%), Gaps = 112/505 (22%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
WV+ N+ ++ A+ + GF PT IQ +P +LA +D++G A+TGSGKTLAFGIPI+
Sbjct: 172 WVELNLSTRVVSAIAKLGFSKPTLIQQKTIPE-ILAGEDVIGKAQTGSGKTLAFGIPIV- 229
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
E EL + AN R A++L+PTRELA
Sbjct: 230 ------------------------EKWLELYVDKANAK------REGPTAVVLSPTRELA 259
Query: 273 IQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
Q+ +HI L G T V V GG+S +KQ R L K I++ATPGRLWE + G
Sbjct: 260 KQLSDHIKALCDGLPTAPYVCTVTGGLSIQKQQRQLEKA-DIVIATPGRLWEVLD-GDMS 317
Query: 331 LTELY-KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
L + + KI +LV+DE DR+ ++G F E ++I+ G
Sbjct: 318 LQDSFTKIKFLVVDEADRLFKAGQFKEAEDII------------------GALDRRDPEA 359
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
D + PRQT VFSAT +L++ L G+ K K + G
Sbjct: 360 DEDDEGDDLPPRQTLVFSATFDKNLQSKL---AGRGKGPKAAAGS--------------- 401
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
+EK YL C + + PK +D
Sbjct: 402 -----------------------DEEKMEYLMK----------CLKFRG-----EPKYID 423
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLK 568
+ + + L E I C EKD YLY ++ +PGR TLVF NSIS+V+RLT LL L
Sbjct: 424 VNPVSQMAEGLKEGLIECGAMEKDLYLYTVLVLNPGRRTLVFTNSISAVRRLTPLLQNLG 483
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
S LPLH+ M Q+ RL++++RF NSIL+ATDVAARGLDI ++ V+HYHVPR+++ Y
Sbjct: 484 LSALPLHSQMIQKARLRSIERFAAAKNSILVATDVAARGLDIKEVDQVLHYHVPRSADTY 543
Query: 629 IHRSGRTARANNEGLTVVLIESDEI 653
IHRSGRTAR + G++V+L DE+
Sbjct: 544 IHRSGRTARGDRSGVSVILCSPDEV 568
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI----PLYIKMFNSLEKKVD-------LPDFPI 1286
D ++HRSGRTAR + G++++L DE+ L K+ + E + I
Sbjct: 541 DTYIHRSGRTARGDRSGVSVILCSPDEVLPTRRLASKVHSEREGGGGGVKREHFIETLSI 600
Query: 1287 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
D + S +K R+DLAK I + + +K K + D WL AA+++ + D E
Sbjct: 601 DRKIASRLKTRVDLAKRIADAVLAKEKGHSEDTWLRNAAEELGVEYDSEEF 651
Score = 49.3 bits (116), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
A++L+PTRELA Q+ +HI L G T V V GG+S +KQ R L K I++ATPG
Sbjct: 249 AVVLSPTRELAKQLSDHIKALCDGLPTAPYVCTVTGGLSIQKQQRQLEKA-DIVIATPGR 307
Query: 1414 L 1414
L
Sbjct: 308 L 308
>gi|401883813|gb|EJT48000.1| ATP dependent RNA helicase [Trichosporon asahii var. asahii CBS 2479]
Length = 779
Score = 307 bits (786), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 205/561 (36%), Positives = 303/561 (54%), Gaps = 90/561 (16%)
Query: 759 NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSG 818
++ED+ + + W K + ++ + L GF PT+IQ +P AL R D+VG AET
Sbjct: 168 DDEDIRL-LPAWAKIPLHASLKKCLLGLGFANPTEIQKQAVPLALEGR-DVVGVAET--- 222
Query: 819 KTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY 878
TLA+ +P+L+ + L P + L
Sbjct: 223 -TLAYSLPVLSYL---LRQPPPR-----------------------------AGKKRPLS 249
Query: 879 ALILAPTRELAIQVQNHILDAGK-YTP-------VKVACVVGGMSTEKQLRILNKCPHIL 930
ALIL PTRELAIQV +H+ + K TP + V VVGG+S KQ RIL++ IL
Sbjct: 250 ALILCPTRELAIQVTDHLTNVVKSVTPEGAKVPRISVGSVVGGLSAHKQRRILDRGADIL 309
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI--LDR-------- 980
VATPGRLW+ ++ L + +L++DE DRMIE+GHF EL++I L R
Sbjct: 310 VATPGRLWDLVKTDDALAASLRTLRFLIVDEADRMIENGHFAELEHIVQLSRRTQVQAED 369
Query: 981 ----------VTMTETSQPR---QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 1027
T E ++PR QTFVFSATL+ L+ +L ++ + +K + ++
Sbjct: 370 EDDDPVFAQMATALEQAEPRDDLQTFVFSATLSKDLQENLKKRRRRPLKRKGKRAS-TLD 428
Query: 1028 RLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 1085
L + L+ + +P IVDLT K TL E+ + EKD YLYYF+L++PGR+LVF
Sbjct: 429 ELLETLDFRDETPAIVDLTPKGNKVSTLREAMVDAVLAEKDLYLYYFLLRYPGRSLVFVG 488
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
SI ++RL LL L+ PLH+ + Q+QRL+NL+RF+ ++ +L+ATDVAARGLDIP
Sbjct: 489 SIDGIRRLVPLLEQLRLPVFPLHSQLQQKQRLRNLERFKASSDGVLIATDVAARGLDIPH 548
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
++HV+H+++PRT++ Y+HRSGRTARA N G L ++ ++ + + SL + PD
Sbjct: 549 VDHVVHFNLPRTADAYVHRSGRTARAQNPGFALQIVSPEDKNVQRGLLKSLGRSAPPPDL 608
Query: 1206 PIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLHRSGRTARANNEGLTLVLIESDE 1264
I+ L +K+RI +A+ IE + K KK D NWL + E+ +
Sbjct: 609 QIEAGFLPKLKERIAVAREIEGAQHKAKKESHDRNWLAEAA---------------EAMD 653
Query: 1265 IPLYIKMFNSLEKKVDLPDFP 1285
I + MF+ E+ D PD P
Sbjct: 654 IDIDPGMFSDFEE--DDPDAP 672
Score = 239 bits (610), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 174/522 (33%), Positives = 255/522 (48%), Gaps = 112/522 (21%)
Query: 142 NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSG 201
++ED+ + + W K + ++ + L GF PT+IQ +P AL R D+VG AET
Sbjct: 168 DDEDIRL-LPAWAKIPLHASLKKCLLGLGFANPTEIQKQAVPLALEGR-DVVGVAET--- 222
Query: 202 KTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY 261
TLA+ +P+L+ + L P + L
Sbjct: 223 -TLAYSLPVLSYL---LRQPPPR-----------------------------AGKKRPLS 249
Query: 262 ALILAPTRELAIQVQNHILDAGK-YTP-------VKVACVVGGMSTEKQLRILNKCPHIL 313
ALIL PTRELAIQV +H+ + K TP + V VVGG+S KQ RIL++ IL
Sbjct: 250 ALILCPTRELAIQVTDHLTNVVKSVTPEGAKVPRISVGSVVGGLSAHKQRRILDRGADIL 309
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
VATPGRLW+ ++ L + +L++DE DRMIE+
Sbjct: 310 VATPGRLWDLVKTDDALAASLRTLRFLIVDEADRMIEN---------------------- 347
Query: 374 QTMIESGHFPELKNI--LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 431
GHF EL++I L R T +
Sbjct: 348 ------GHFAELEHIVQLSRRTQVQAED-------------------------------E 370
Query: 432 KGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
DP ++ L P+ D + + TL SK L ++ +K T
Sbjct: 371 DDDPVFAQMATALEQAEPR--DDLQTFVFSATL--SKDLQENLKKRRRRPLKRKGKRAST 426
Query: 492 LCEEIQDL-LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550
L E ++ L ++P IVDLT K TL E+ + EKD YLYYF+L++PGR+LVF
Sbjct: 427 LDELLETLDFRDETPAIVDLTPKGNKVSTLREAMVDAVLAEKDLYLYYFLLRYPGRSLVF 486
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610
SI ++RL LL L+ PLH+ + Q+QRL+NL+RF+ ++ +L+ATDVAARGLDI
Sbjct: 487 VGSIDGIRRLVPLLEQLRLPVFPLHSQLQQKQRLRNLERFKASSDGVLIATDVAARGLDI 546
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
P ++HV+H+++PRT++ Y+HRSGRTARA N G + ++ ++
Sbjct: 547 PHVDHVVHFNLPRTADAYVHRSGRTARAQNPGFALQIVSPED 588
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 1225 IEYLESKIKKNRP---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1281
I +++ + N P D ++HRSGRTARA N G L ++ ++ + + SL +
Sbjct: 546 IPHVDHVVHFNLPRTADAYVHRSGRTARAQNPGFALQIVSPEDKNVQRGLLKSLGRSAPP 605
Query: 1282 PDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIID 1332
PD I+ L +K+RI +A+ IE + K KK D NWL +AA+ MDI ID
Sbjct: 606 PDLQIEAGFLPKLKERIAVAREIEGAQHKAKKESHDRNWLAEAAEAMDIDID 657
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 12/89 (13%)
Query: 1356 ALILAPTRELAIQVQNHILDAGK-YTP-------VKVACVVGGMSTEKQLRILNKCPHIL 1407
ALIL PTRELAIQV +H+ + K TP + V VVGG+S KQ RIL++ IL
Sbjct: 250 ALILCPTRELAIQVTDHLTNVVKSVTPEGAKVPRISVGSVVGGLSAHKQRRILDRGADIL 309
Query: 1408 VATPGALSLKRIDLAKSIEYLESKIKKNR 1436
VATPG L DL K+ + L + ++ R
Sbjct: 310 VATPGRL----WDLVKTDDALAASLRTLR 334
>gi|328860816|gb|EGG09921.1| hypothetical protein MELLADRAFT_34213 [Melampsora larici-populina
98AG31]
Length = 525
Score = 307 bits (786), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 193/538 (35%), Positives = 293/538 (54%), Gaps = 96/538 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA--RKDIVGAAETGSGKTLAFGIPI 827
W +P + A++ F PT +Q +P +L + +D+V AETGSGKTLA+ IPI
Sbjct: 9 WSHHQLPSVLKHAIHTLSFDKPTPVQDATLPISLSSTPSRDLVAIAETGSGKTLAYAIPI 68
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
+ +++ L+ PT D D + ALIL PTRE
Sbjct: 69 INSLLDSLKLPTSPDCPDD----------------------------LPIKALILTPTRE 100
Query: 888 LAIQVQNHI-----------LDAGKYTP-----VKVACVVGGMSTEKQLRILNKCPH--- 928
L +QV++HI D GK P + V GG++ KQ + L +
Sbjct: 101 LCLQVKSHIDSFVLAMCTPTGDTGKEKPKNRSGISTIAVCGGIAAAKQRKQLERSQRLYN 160
Query: 929 --------ILVATPGRLWEFIQLGHFHLTEL-YKINYLVIDETDRMIESGHFPELKNILD 979
ILVATPGRLW+ IQ + ++++LV+DE D+M+E GHF E++ IL
Sbjct: 161 SERAGKGSILVATPGRLWDLIQSWDALANGIRRRLDWLVVDEADKMVEKGHFAEVEKILK 220
Query: 980 RVTMTETS-------------------QPRQTFVFSATLTHSLKNSLNLKKG--QSKSKK 1018
+ + + +T +FSAT+ L+ +NLKK QS++++
Sbjct: 221 LIQRPSKTLENSNWADDWGKDQKVVVKEDVRTMIFSATMDKHLQ--INLKKNWRQSRAQR 278
Query: 1019 ---VSKGDPSIKRLQDLL-----NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 1070
+ DP L+DLL + P+++DL+ K + L E KI C +KD YL+
Sbjct: 279 DRVAATKDP----LEDLLERIDFRDEEPEVIDLSPKGRVAVGLKECKIECVLKDKDLYLF 334
Query: 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+F+L++PGR+LVF +SIS+++RL ++T+L K + L LH++M QR RLK+LD+F+
Sbjct: 335 HFLLRYPGRSLVFLSSISALRRLAPIVTLLFPKSTVLTLHSAMQQRARLKSLDKFKSSPK 394
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+ILL+TDVAARGLDIP ++HVIHY VPRT + Y+HRSGRTARA +G+ LVLI DE+ +
Sbjct: 395 TILLSTDVAARGLDIPLVDHVIHYQVPRTVDCYVHRSGRTARAGRDGVALVLIAPDEVKV 454
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLHRSG 1245
+ + SL + +LP PI+ S+ + +K+ + LA I+ LE + K D NW ++
Sbjct: 455 WRGLMRSLNRVDNLPSPPIEHSISNKLKELVTLASKIDELEHRSTKKSADANWAKKTA 512
Score = 271 bits (694), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 180/533 (33%), Positives = 274/533 (51%), Gaps = 121/533 (22%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA--RKDIVGAAETGSGKTLAFGIPI 210
W +P + A++ F PT +Q +P +L + +D+V AETGSGKTLA+ IPI
Sbjct: 9 WSHHQLPSVLKHAIHTLSFDKPTPVQDATLPISLSSTPSRDLVAIAETGSGKTLAYAIPI 68
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
+ +++ L+ PT D D + ALIL PTRE
Sbjct: 69 INSLLDSLKLPTSPDCPDD----------------------------LPIKALILTPTRE 100
Query: 271 LAIQVQNHI-----------LDAGKYTP-----VKVACVVGGMSTEKQLRILNKCPH--- 311
L +QV++HI D GK P + V GG++ KQ + L +
Sbjct: 101 LCLQVKSHIDSFVLAMCTPTGDTGKEKPKNRSGISTIAVCGGIAAAKQRKQLERSQRLYN 160
Query: 312 --------ILVATPGRLWEFIQLGHFHLTELYK-INYLVIDETDRMIESGHFPELKNILD 362
ILVATPGRLW+ IQ + + +++LV+DE D+M+E GHF E++ IL
Sbjct: 161 SERAGKGSILVATPGRLWDLIQSWDALANGIRRRLDWLVVDEADKMVEKGHFAEVEKILK 220
Query: 363 RVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 422
+ +P +T+ E+ ++ + +V + E + T +FSAT+ L+ +NLKK
Sbjct: 221 LI-----QRPSKTL-ENSNWADDWGKDQKVVVKEDVR---TMIFSATMDKHLQ--INLKK 269
Query: 423 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482
+S+ +D + + DL E+I D +D
Sbjct: 270 NWRQSRAQ----------RDRVAATKDPLEDLLERI---------------DFRD----- 299
Query: 483 FILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 542
+ P+++DL+ K + L E KI C +KD YL++F+L+
Sbjct: 300 --------------------EEPEVIDLSPKGRVAVGLKECKIECVLKDKDLYLFHFLLR 339
Query: 543 HPGRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+PGR+LVF +SIS+++RL ++T+L K + L LH++M QR RLK+LD+F+ +ILL+
Sbjct: 340 YPGRSLVFLSSISALRRLAPIVTLLFPKSTVLTLHSAMQQRARLKSLDKFKSSPKTILLS 399
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
TDVAARGLDIP ++HVIHY VPRT + Y+HRSGRTARA +G+ +VLI DE+
Sbjct: 400 TDVAARGLDIPLVDHVIHYQVPRTVDCYVHRSGRTARAGRDGVALVLIAPDEV 452
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA +G+ LVLI DE+ ++ + SL + +LP PI+ S+ + +K+
Sbjct: 425 DCYVHRSGRTARAGRDGVALVLIAPDEVKVWRGLMRSLNRVDNLPSPPIEHSISNKLKEL 484
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDD 1333
+ LA I+ LE + K D NW +K A+ +DI DD
Sbjct: 485 VTLASKIDELEHRSTKKSADANWAKKTAELLDIEDDD 521
Score = 45.1 bits (105), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 33/113 (29%)
Query: 1356 ALILAPTRELAIQVQNHI-----------LDAGKYTP-----VKVACVVGGMSTEKQLRI 1399
ALIL PTREL +QV++HI D GK P + V GG++ KQ +
Sbjct: 92 ALILTPTRELCLQVKSHIDSFVLAMCTPTGDTGKEKPKNRSGISTIAVCGGIAAAKQRKQ 151
Query: 1400 LNKCPH-----------ILVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWL 1441
L + ILVATPG L DL +S + L + I++ +WL
Sbjct: 152 LERSQRLYNSERAGKGSILVATPGRL----WDLIQSWDALANGIRRRL--DWL 198
>gi|325185978|emb|CCA20482.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 743
Score = 306 bits (783), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 190/531 (35%), Positives = 281/531 (52%), Gaps = 96/531 (18%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W FN+ TI+ AL+ F PT IQ + +AL+ R+D+VG A TGSGKTLAFGIPIL
Sbjct: 152 WEAFNLHHTILEALHDNKFLAPTVIQRKAIAAALIQREDVVGIASTGSGKTLAFGIPILQ 211
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+NK T K+ ALI+APTRELA
Sbjct: 212 HFLNK--------------------------------TSGALKSHPGCKALIIAPTRELA 239
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q+Q H+ K + ++ +VGGMS +KQ R+L+ P I++ATPGRLW+ +Q G+ H
Sbjct: 240 LQIQKHLKAMLKDGSIGISVLVGGMSLQKQERVLSYEPEIVIATPGRLWDIVQNGNKHFE 299
Query: 950 ELY-KINYLVIDETDRMIESGHFPELKNIL---------------------DRVTM---- 983
L+ + +LV+DE DRM+++G + +L+ +L D+ T+
Sbjct: 300 NLHLSLEFLVVDEADRMLQTGSYKDLEKLLKLINSKPASTKASRGGDSDAEDKKTLLRED 359
Query: 984 ----------TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 1033
+Q RQTF+FSAT+T N +K QSK K + D +Q +
Sbjct: 360 AVNTRQFDLRGNKAQSRQTFLFSATMTGKCHN----RKKQSKGK-TNTLDMLHTVIQRVG 414
Query: 1034 NIKSPKIVDLT------------------EKIGITKTLTESKILCKH----DEKDSYLYY 1071
K P I+DL+ + + TL E LC++ +D+YLYY
Sbjct: 415 FRKKPTIIDLSMHTRTSEALPQSPSQSKAQSSSLEVTLPEGLELCEYRVLETTRDNYLYY 474
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
F+ Q+PGRT+VF NSI+ V++L LL +L+ LHA M QRQRLK LD+F+ IL
Sbjct: 475 FLEQYPGRTIVFLNSINHVRQLHSLLELLELPVFSLHAEMQQRQRLKKLDQFKLHCQGIL 534
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATDVAARGLDIP +++V+HYH+ +T E++IHRSGRTAR +G ++ L+ + E + +
Sbjct: 535 VATDVAARGLDIPNVDYVVHYHIAKTPEMFIHRSGRTARGTAKGFSISLVTTKETRYHSE 594
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
+ L++ + + F + L I++R+ LA + + K D WL
Sbjct: 595 ICQFLKRPLGMAQFSFNHRFLHPIQERVRLANLVSRHDRMQGKAHSDKTWL 645
Score = 295 bits (755), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 189/512 (36%), Positives = 274/512 (53%), Gaps = 87/512 (16%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W FN+ TI+ AL+ F PT IQ + +AL+ R+D+VG A TGSGKTLAFGIPIL
Sbjct: 152 WEAFNLHHTILEALHDNKFLAPTVIQRKAIAAALIQREDVVGIASTGSGKTLAFGIPILQ 211
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+NK T K+ ALI+APTRELA
Sbjct: 212 HFLNK--------------------------------TSGALKSHPGCKALIIAPTRELA 239
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q+Q H+ K + ++ +VGGMS +KQ R+L+ P I++ATPGRLW+ +Q G+ H
Sbjct: 240 LQIQKHLKAMLKDGSIGISVLVGGMSLQKQERVLSYEPEIVIATPGRLWDIVQNGNKHFE 299
Query: 333 ELY-KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG--HFPELKNIL 389
L+ + +LV+DE DRM+++G + +L+ +L + S+P T G E K L
Sbjct: 300 NLHLSLEFLVVDEADRMLQTGSYKDLEKLLKLIN----SKPASTKASRGGDSDAEDKKTL 355
Query: 390 DRVTMTET---------SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
R T +Q RQTF+FSAT+T N +K QSK K + D +
Sbjct: 356 LREDAVNTRQFDLRGNKAQSRQTFLFSATMTGKCHN----RKKQSKGK-TNTLDMLHTVI 410
Query: 441 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500
Q + K P I+DL+ ++ L +S P ++ + L
Sbjct: 411 QRVGFRKKPTIIDLSMHTRTSEALPQS--------------------PSQSKAQSSS--L 448
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 560
+ P+ ++L E + T +D+YLYYF+ Q+PGRT+VF NSI+ V++L
Sbjct: 449 EVTLPEGLELCEYRVLETT------------RDNYLYYFLEQYPGRTIVFLNSINHVRQL 496
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
LL +L+ LHA M QRQRLK LD+F+ IL+ATDVAARGLDIP +++V+HYH
Sbjct: 497 HSLLELLELPVFSLHAEMQQRQRLKKLDQFKLHCQGILVATDVAARGLDIPNVDYVVHYH 556
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+ +T E++IHRSGRTAR +G ++ L+ + E
Sbjct: 557 IAKTPEMFIHRSGRTARGTAKGFSISLVTTKE 588
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q+Q H+ K + ++ +VGGMS +KQ R+L+ P I++ATPG L
Sbjct: 229 ALIIAPTRELALQIQKHLKAMLKDGSIGISVLVGGMSLQKQERVLSYEPEIVIATPGRL 287
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P+ ++HRSGRTAR +G ++ L+ + E + ++ L++ + + F + L I++
Sbjct: 561 PEMFIHRSGRTARGTAKGFSISLVTTKETRYHSEICQFLKRPLGMAQFSFNHRFLHPIQE 620
Query: 1297 RIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDE 1334
R+ LA + + K D WL + A DI IDD+
Sbjct: 621 RVRLANLVSRHDRMQGKAHSDKTWLTQMAAAADIEIDDD 659
>gi|406696280|gb|EKC99572.1| ATP dependent RNA helicase [Trichosporon asahii var. asahii CBS 8904]
Length = 779
Score = 305 bits (780), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 204/561 (36%), Positives = 302/561 (53%), Gaps = 90/561 (16%)
Query: 759 NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSG 818
++ED+ + + W K + ++ + L GF PT+IQ +P AL R D+VG AET
Sbjct: 168 DDEDIRL-LPAWAKIPLHASLKKCLLGLGFANPTEIQKQAVPLALEGR-DVVGVAET--- 222
Query: 819 KTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY 878
TLA+ +P+L+ + L P + L
Sbjct: 223 -TLAYSLPVLSYL---LRQPPPR-----------------------------AGKKRPLS 249
Query: 879 ALILAPTRELAIQVQNHILDAGK-YTP-------VKVACVVGGMSTEKQLRILNKCPHIL 930
ALIL PTRELAIQV +H+ + K TP + V VVGG+S KQ RIL++ IL
Sbjct: 250 ALILCPTRELAIQVTDHLTNVVKSVTPEGAKVPRISVGSVVGGLSAHKQRRILDRGADIL 309
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI--LDR-------- 980
VATPGRLW+ ++ L + +L++DE DRMIE+GHF EL++I L R
Sbjct: 310 VATPGRLWDLVKTDDALAASLRTLRFLIVDEADRMIENGHFAELEHIVQLSRRTQVQAED 369
Query: 981 ----------VTMTETSQPR---QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 1027
T E ++PR QTFVFSATL+ L+ +L ++ + +K + ++
Sbjct: 370 EDDDPVFAQMATALEQAEPRDDLQTFVFSATLSKDLQENLKKRRRRPLKRKSKRAS-TLD 428
Query: 1028 RLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 1085
L + L+ + +P IVDLT K TL E+ + EKD YLYYF+L++PGR+LVF
Sbjct: 429 ELLETLDFRDETPAIVDLTPKGNKVSTLREAMVDAVLAEKDLYLYYFLLRYPGRSLVFVG 488
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
SI ++ L LL L+ PLH+ + Q+QRL+NL+RF+ ++ +L+ATDVAARGLDIP
Sbjct: 489 SIDGIRCLVPLLEQLRLPVFPLHSQLQQKQRLRNLERFKASSDGVLIATDVAARGLDIPH 548
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
++HV+H+++PRT++ Y+HRSGRTARA N G L ++ ++ + + SL + PD
Sbjct: 549 VDHVVHFNLPRTADAYVHRSGRTARAQNPGFALQIVSPEDKNVQRGLLKSLGRSAPPPDL 608
Query: 1206 PIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLHRSGRTARANNEGLTLVLIESDE 1264
I+ L +K+RI +A+ IE + K KK D NWL + E+ +
Sbjct: 609 QIEAGFLPKLKERIAVAREIEGAQHKAKKESHDRNWLAEAA---------------EAMD 653
Query: 1265 IPLYIKMFNSLEKKVDLPDFP 1285
I + MF+ E+ D PD P
Sbjct: 654 IDIDPGMFSDFEE--DDPDAP 672
Score = 236 bits (602), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 173/522 (33%), Positives = 254/522 (48%), Gaps = 112/522 (21%)
Query: 142 NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSG 201
++ED+ + + W K + ++ + L GF PT+IQ +P AL R D+VG AET
Sbjct: 168 DDEDIRL-LPAWAKIPLHASLKKCLLGLGFANPTEIQKQAVPLALEGR-DVVGVAET--- 222
Query: 202 KTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY 261
TLA+ +P+L+ + L P + L
Sbjct: 223 -TLAYSLPVLSYL---LRQPPPR-----------------------------AGKKRPLS 249
Query: 262 ALILAPTRELAIQVQNHILDAGK-YTP-------VKVACVVGGMSTEKQLRILNKCPHIL 313
ALIL PTRELAIQV +H+ + K TP + V VVGG+S KQ RIL++ IL
Sbjct: 250 ALILCPTRELAIQVTDHLTNVVKSVTPEGAKVPRISVGSVVGGLSAHKQRRILDRGADIL 309
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
VATPGRLW+ ++ L + +L++DE DRMIE+
Sbjct: 310 VATPGRLWDLVKTDDALAASLRTLRFLIVDEADRMIEN---------------------- 347
Query: 374 QTMIESGHFPELKNI--LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 431
GHF EL++I L R T +
Sbjct: 348 ------GHFAELEHIVQLSRRTQVQAED-------------------------------E 370
Query: 432 KGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
DP ++ L P+ D + + TL SK L ++ +K T
Sbjct: 371 DDDPVFAQMATALEQAEPR--DDLQTFVFSATL--SKDLQENLKKRRRRPLKRKSKRAST 426
Query: 492 LCEEIQDL-LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550
L E ++ L ++P IVDLT K TL E+ + EKD YLYYF+L++PGR+LVF
Sbjct: 427 LDELLETLDFRDETPAIVDLTPKGNKVSTLREAMVDAVLAEKDLYLYYFLLRYPGRSLVF 486
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610
SI ++ L LL L+ PLH+ + Q+QRL+NL+RF+ ++ +L+ATDVAARGLDI
Sbjct: 487 VGSIDGIRCLVPLLEQLRLPVFPLHSQLQQKQRLRNLERFKASSDGVLIATDVAARGLDI 546
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
P ++HV+H+++PRT++ Y+HRSGRTARA N G + ++ ++
Sbjct: 547 PHVDHVVHFNLPRTADAYVHRSGRTARAQNPGFALQIVSPED 588
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 1225 IEYLESKIKKNRP---DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1281
I +++ + N P D ++HRSGRTARA N G L ++ ++ + + SL +
Sbjct: 546 IPHVDHVVHFNLPRTADAYVHRSGRTARAQNPGFALQIVSPEDKNVQRGLLKSLGRSAPP 605
Query: 1282 PDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIID 1332
PD I+ L +K+RI +A+ IE + K KK D NWL +AA+ MDI ID
Sbjct: 606 PDLQIEAGFLPKLKERIAVAREIEGAQHKAKKESHDRNWLAEAAEAMDIDID 657
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 12/89 (13%)
Query: 1356 ALILAPTRELAIQVQNHILDAGK-YTP-------VKVACVVGGMSTEKQLRILNKCPHIL 1407
ALIL PTRELAIQV +H+ + K TP + V VVGG+S KQ RIL++ IL
Sbjct: 250 ALILCPTRELAIQVTDHLTNVVKSVTPEGAKVPRISVGSVVGGLSAHKQRRILDRGADIL 309
Query: 1408 VATPGALSLKRIDLAKSIEYLESKIKKNR 1436
VATPG L DL K+ + L + ++ R
Sbjct: 310 VATPGRL----WDLVKTDDALAASLRTLR 334
>gi|388852351|emb|CCF53966.1| related to MAK5-ATP-dependent RNA helicase [Ustilago hordei]
Length = 969
Score = 303 bits (777), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 201/596 (33%), Positives = 298/596 (50%), Gaps = 144/596 (24%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL----------------------- 803
+ W + + RAL KGF PT+IQ +P AL
Sbjct: 246 LPAWSHLPLHPALKRALAHKGFTKPTEIQDRSLPFALGLQSQQEAESSIDDSHEDAKQAT 305
Query: 804 -----LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 858
++D+VG ++TGSGKTLA+G+ IL + EN
Sbjct: 306 ATSSSQKKRDVVGVSQTGSGKTLAYGLAILNHLFENAENAI------------------- 346
Query: 859 LEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV------------- 905
S++ +++ L ALIL PTRELA+QV +H+ + + + +
Sbjct: 347 --ASSSSRRNALEQVPPPLGALILCPTRELALQVSSHLTEIVRASCIISADDDDDQAEIS 404
Query: 906 --------KVACVVGGMSTEKQLRILNKCPH---------ILVATPGRLWEFIQLGHFHL 948
++A V GGMS +KQ R+L I++ATPGRLWE +L
Sbjct: 405 HKKLLGRPQIAVVCGGMSEQKQRRLLQGRSRASDRQSGVDIIIATPGRLWEMTRLDDHLA 464
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP------------------- 989
+ + +LV+DE DRM++ GHF E+++IL+ V TE P
Sbjct: 465 ARIKQTRFLVLDEADRMVQVGHFAEMEHILNLVNRTEARHPVPGKDGQQHQPHHHQSDSE 524
Query: 990 ---------------RQTFVFSATLTHSLKNSLNLKK----GQSKSKKVSKGDPSIKRLQ 1030
QTF+FSATL+ +L+ +NLKK Q K+ K + + L
Sbjct: 525 SEREVQTHRVKPSCNMQTFIFSATLSKTLQ--INLKKRRKLKQLTKKRHCKRNANSTTLD 582
Query: 1031 DLLNI-----KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 1085
+L++ +P ++DLT G+ + L ++K+ C +KD YLYYF+L++PGR+LVF N
Sbjct: 583 ELVSRIDFRDPTPAVIDLTRAQGMPQGLMQTKLECVRKDKDLYLYYFLLRYPGRSLVFVN 642
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF----------------RDQN-- 1127
SI +++RLT LL L P+H+ + Q+QRL NLDRF +D
Sbjct: 643 SIDAIRRLTPLLGELGIRSYPIHSQLQQKQRLNNLDRFSSFSLHSTPHSAKGKGKDGGRV 702
Query: 1128 -NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N ILLATD+AARGLDIP ++HV+HY +PR+++ YIHR GRTARA + G++L LIE E
Sbjct: 703 KNCILLATDLAARGLDIPSVDHVVHYQLPRSADTYIHRCGRTARAGSSGVSLALIEPKEK 762
Query: 1187 PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
L+ K+ S K D+P+FPI S L+L+++R++LA I+ + K D NWL
Sbjct: 763 QLWGKLCRSFSSKPDMPNFPITFSTLALLRERVELALKIDKQTHMVNKQTHDSNWL 818
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 177/584 (30%), Positives = 277/584 (47%), Gaps = 135/584 (23%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL----------------------- 186
+ W + + RAL KGF PT+IQ +P AL
Sbjct: 246 LPAWSHLPLHPALKRALAHKGFTKPTEIQDRSLPFALGLQSQQEAESSIDDSHEDAKQAT 305
Query: 187 -----LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 241
++D+VG ++TGSGKTLA+G+ IL + EN
Sbjct: 306 ATSSSQKKRDVVGVSQTGSGKTLAYGLAILNHLFENAENAI------------------- 346
Query: 242 LEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV------------- 288
S++ +++ L ALIL PTRELA+QV +H+ + + + +
Sbjct: 347 --ASSSSRRNALEQVPPPLGALILCPTRELALQVSSHLTEIVRASCIISADDDDDQAEIS 404
Query: 289 --------KVACVVGGMSTEKQLRILNKCPH---------ILVATPGRLWEFIQLGHFHL 331
++A V GGMS +KQ R+L I++ATPGRLWE +L
Sbjct: 405 HKKLLGRPQIAVVCGGMSEQKQRRLLQGRSRASDRQSGVDIIIATPGRLWEMTRLDDHLA 464
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP---RQTMIESGHFPELKNI 388
+ + +LV+DE DRM++ GHF E+++IL+ V TE P + H + +
Sbjct: 465 ARIKQTRFLVLDEADRMVQVGHFAEMEHILNLVNRTEARHPVPGKDGQQHQPHHHQSDSE 524
Query: 389 LDRVTMTETSQPR---QTFVFSATLTHSLKNSLNLKK----GQSKSKKVSKGDPSIKRLQ 441
+R T +P QTF+FSATL+ +L+ +NLKK Q K+ K + + L
Sbjct: 525 SEREVQTHRVKPSCNMQTFIFSATLSKTLQ--INLKKRRKLKQLTKKRHCKRNANSTTLD 582
Query: 442 DLLNI-----KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
+L++ +P ++DLT G+ + L ++K+ C +KD YLYYF+L++PGR+L +
Sbjct: 583 ELVSRIDFRDPTPAVIDLTRAQGMPQGLMQTKLECVRKDKDLYLYYFLLRYPGRSLV-FV 641
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556
+ I+ ++ L ++GI SY + LQ R
Sbjct: 642 NSIDAIR--RLTPLLGELGIR----------------SYPIHSQLQQKQR---------- 673
Query: 557 VKRLTQLLTMLKCSPLPLHAS-MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615
L + + S LH++ + + + K+ R + N ILLATD+AARGLDIP ++H
Sbjct: 674 ------LNNLDRFSSFSLHSTPHSAKGKGKDGGRVK---NCILLATDLAARGLDIPSVDH 724
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659
V+HY +PR+++ YIHR GRTARA + G+++ LIE E L K
Sbjct: 725 VVHYQLPRSADTYIHRCGRTARAGSSGVSLALIEPKEKQLWGKL 768
Score = 83.2 bits (204), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HR GRTARA + G++L LIE E L+ K+ S K D+P+FPI S L+L+++R
Sbjct: 735 DTYIHRCGRTARAGSSGVSLALIEPKEKQLWGKLCRSFSSKPDMPNFPITFSTLALLRER 794
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDENLIQPN 1340
++LA I+ + K D NWL K A+D D+ +++E + P+
Sbjct: 795 VELALKIDKQTHMVNKQTHDSNWLAKLAEDADLDLEEE-YVHPD 837
Score = 48.9 bits (115), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 36/112 (32%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPV---------------------KVACVVGGMSTE 1394
ALIL PTRELA+QV +H+ + + + + ++A V GGMS +
Sbjct: 365 ALILCPTRELALQVSSHLTEIVRASCIISADDDDDQAEISHKKLLGRPQIAVVCGGMSEQ 424
Query: 1395 KQLRILNKCPH---------ILVATPGAL-SLKRIDLAKSIEYLESKIKKNR 1436
KQ R+L I++ATPG L + R+D ++L ++IK+ R
Sbjct: 425 KQRRLLQGRSRASDRQSGVDIIIATPGRLWEMTRLD-----DHLAARIKQTR 471
>gi|255718883|ref|XP_002555722.1| KLTH0G15840p [Lachancea thermotolerans]
gi|238937106|emb|CAR25285.1| KLTH0G15840p [Lachancea thermotolerans CBS 6340]
Length = 797
Score = 303 bits (777), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 203/609 (33%), Positives = 317/609 (52%), Gaps = 105/609 (17%)
Query: 698 QNPSQVEVSELSANTNDPDDQVNKT--EEIQSDEPHSKKLKQKKKKKQTYTSANKELLEV 755
+N E ELSA +++ +D N + E Q + ++ + KQ++ +++ +A+ ++E
Sbjct: 134 KNFDDFEEGELSAASSNGEDNENYSDNELGQEESENAGEQKQEQNHEESEANASGAIMED 193
Query: 756 DTSNNE---DMFVQ------------MAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVM 799
+ ++ E ++F + +W + N+ T ++ L +GF PT IQSM +
Sbjct: 194 NAADGELETNIFGAELSIPDNVEPDLLPQWTETMNLSMTTLQGLAAQGFTKPTDIQSMTI 253
Query: 800 PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 859
P AL KDI+G A TGSGKTLA+GIPIL +V
Sbjct: 254 PPALEG-KDIMGKASTGSGKTLAYGIPILERLV--------------------------- 285
Query: 860 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMS 915
+T +K LI PTRELA QV H+ K +P + + GG+S
Sbjct: 286 ----------ADRTTDKTVGLIFTPTRELAHQVTQHLQKLACVIIKKSPYAIISLTGGLS 335
Query: 916 TEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPE 973
+KQ R+L + C I+VATPGR E ++ + + + LV+DE DR+++ GHF E
Sbjct: 336 IQKQERLLKYDGCARIVVATPGRFLEMLERDPKLIDRFSQTDCLVLDEVDRLLQDGHFEE 395
Query: 974 LKNILDRVTMTETSQPR----------QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG- 1022
IL + + + QT VFSAT + L N L+ + KKV G
Sbjct: 396 FDKILKHLGKARNMKKKVKSEFAGTGWQTMVFSATFSVDLFNKLS----TTSWKKVGGGK 451
Query: 1023 -----DPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
+ S+K L ++ +S P I+D I + ES I C E+D + YYF+ +
Sbjct: 452 DDDEMELSLKHLMTKIHFRSKPVIIDADPDHKIHSKIKESLIECLPTERDLFAYYFLTVY 511
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN--------- 1127
PG TL+FCN+I SVK+L L L+ S +H+SM Q+ RLKNL++F+ QN
Sbjct: 512 PGSTLIFCNAIDSVKKLNAYLNFLQVSSFQIHSSMTQKNRLKNLEKFQ-QNVLANKGKGK 570
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI- 1186
++L+A+DVAARGLDIPGI HV+HYH+PR++++YIHRSGRTAR + EG+++++ E
Sbjct: 571 ATVLIASDVAARGLDIPGINHVVHYHLPRSADVYIHRSGRTARGDQEGVSVMICSPQEAM 630
Query: 1187 --------PLYIKMFNSLEKKV--DLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-N 1235
L K S KK D+P FPI+ S+LS +++R +A ++ + + +
Sbjct: 631 GPLRKLRKVLASKSATSYGKKWQKDVPVFPIEPSILSQLRERGSMANTLAEDQLATRSLS 690
Query: 1236 RPDNWLHRS 1244
+ +NWL ++
Sbjct: 691 KDENWLKKA 699
Score = 273 bits (699), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 195/611 (31%), Positives = 288/611 (47%), Gaps = 145/611 (23%)
Query: 81 QNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKE--LLEV 138
+N E ELSA +++ +D N ++ E S +QK+++ + AN ++E
Sbjct: 134 KNFDDFEEGELSAASSNGEDNENYSDNELGQEESENAGEQKQEQNHEESEANASGAIMED 193
Query: 139 DTSNNE---DMFVQ------------MAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVM 182
+ ++ E ++F + +W + N+ T ++ L +GF PT IQSM +
Sbjct: 194 NAADGELETNIFGAELSIPDNVEPDLLPQWTETMNLSMTTLQGLAAQGFTKPTDIQSMTI 253
Query: 183 PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 242
P AL KDI+G A TGSGKTLA+GIPIL +V
Sbjct: 254 PPALEG-KDIMGKASTGSGKTLAYGIPILERLV--------------------------- 285
Query: 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMS 298
+T +K LI PTRELA QV H+ K +P + + GG+S
Sbjct: 286 ----------ADRTTDKTVGLIFTPTRELAHQVTQHLQKLACVIIKKSPYAIISLTGGLS 335
Query: 299 TEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPE 356
+KQ R+L + C I+VATPGR E ++ + + + LV+DE DR+++ GHF E
Sbjct: 336 IQKQERLLKYDGCARIVVATPGRFLEMLERDPKLIDRFSQTDCLVLDEVDRLLQDGHFEE 395
Query: 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416
IL H + +N+ +V QT VFSAT + L N
Sbjct: 396 FDKILK------------------HLGKARNMKKKVKSEFAGTGWQTMVFSATFSVDLFN 437
Query: 417 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 476
L+ + KKV G K ++L+ K +TK SK
Sbjct: 438 KLS----TTSWKKVGGG-------------KDDDEMELSLKHLMTKIHFRSK-------- 472
Query: 477 DSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 536
P I+D I + ES I C E+D +
Sbjct: 473 ----------------------------PVIIDADPDHKIHSKIKESLIECLPTERDLFA 504
Query: 537 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN-- 594
YYF+ +PG TL+FCN+I SVK+L L L+ S +H+SM Q+ RLKNL++F+ QN
Sbjct: 505 YYFLTVYPGSTLIFCNAIDSVKKLNAYLNFLQVSSFQIHSSMTQKNRLKNLEKFQ-QNVL 563
Query: 595 -------NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
++L+A+DVAARGLDIPGI HV+HYH+PR++++YIHRSGRTAR + EG++V++
Sbjct: 564 ANKGKGKATVLIASDVAARGLDIPGINHVVHYHLPRSADVYIHRSGRTARGDQEGVSVMI 623
Query: 648 IESDEI--PLK 656
E PL+
Sbjct: 624 CSPQEAMGPLR 634
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 12/110 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI---------PLYIKMFNSLEKKV--DLPDFPI 1286
D ++HRSGRTAR + EG+++++ E L K S KK D+P FPI
Sbjct: 602 DVYIHRSGRTARGDQEGVSVMICSPQEAMGPLRKLRKVLASKSATSYGKKWQKDVPVFPI 661
Query: 1287 DESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDEN 1335
+ S+LS +++R +A ++ + + ++ +NWL+KAA D+ I +D E+
Sbjct: 662 EPSILSQLRERGSMANTLAEDQLATRSLSKDENWLKKAADDLGIELDSED 711
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMSTEKQLRIL--NKCPHILVA 1409
LI PTRELA QV H+ K +P + + GG+S +KQ R+L + C I+VA
Sbjct: 295 GLIFTPTRELAHQVTQHLQKLACVIIKKSPYAIISLTGGLSIQKQERLLKYDGCARIVVA 354
Query: 1410 TPG 1412
TPG
Sbjct: 355 TPG 357
>gi|358395256|gb|EHK44643.1| hypothetical protein TRIATDRAFT_172944, partial [Trichoderma
atroviride IMI 206040]
Length = 785
Score = 303 bits (776), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 194/499 (38%), Positives = 273/499 (54%), Gaps = 60/499 (12%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
WV+ N+ I+ A+ + GF PT IQ +P +LA +D++G A+TGSGKTLAFGIPI+
Sbjct: 223 WVELNLSTRILSAIAKLGFAKPTLIQEKTIPE-ILAGEDVIGKAQTGSGKTLAFGIPIV- 280
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
E EL EE N R A++L+PTRELA
Sbjct: 281 ------------------------EKWLELYEERRNVK------REGPTAVVLSPTRELA 310
Query: 890 IQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
Q+ +HI L G T V V GG+S KQ R L K I++ATPGRLWE + G
Sbjct: 311 KQLSDHIKALCDGLPTAPYVCTVTGGLSIHKQQRQLEKA-DIVIATPGRLWEVLD-GDMS 368
Query: 948 LTELY-KINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQ-------PRQTFVFS 996
L + KI +LV+DE DR+ ++G F E ++I LDR PRQT VFS
Sbjct: 369 LQNSFTKIKFLVVDEADRLFKAGQFKEAEDIIGALDRKDPDAEDDDDNEELPPRQTLVFS 428
Query: 997 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTE 1055
AT +L++ L ++ K+ S + ++ L L +S PK +D+ + L E
Sbjct: 429 ATFDKNLQSKLAVRGKAPKAGAGSSDEEKMEYLMKSLKFRSEPKFIDVNPASQMASGLKE 488
Query: 1056 SKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
I C EKD YLY ++ +P RTLVF NSIS+V+RL LL L S LPLH+ M Q+
Sbjct: 489 GLIECGAMEKDLYLYTVLVLNPNKRTLVFTNSISAVRRLAPLLQNLGLSVLPLHSQMIQK 548
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
RL++++RF NSIL+ATDVAARGLDI ++ V+HYHVPR ++ YIHRSGRTAR +
Sbjct: 549 ARLRSIERFAASRNSILVATDVAARGLDIKEVDQVLHYHVPRQADTYIHRSGRTARGDRS 608
Query: 1175 GLTLVLIESDEIPLYIKMFN----------SLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
G++++L +E+ ++ SL+++ + ID + +K R+DLAK
Sbjct: 609 GVSVILCSPEEVLPTRRLAGKVHAERDGSTSLKREHFIETLLIDRKIAQRLKPRVDLAKR 668
Query: 1225 I-EYLESKIKKNRPDNWLH 1242
I + + +K K + D WL
Sbjct: 669 IADAVLAKEKGHSEDQWLR 687
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 173/509 (33%), Positives = 240/509 (47%), Gaps = 119/509 (23%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
WV+ N+ I+ A+ + GF PT IQ +P +LA +D++G A+TGSGKTLAFGIPI+
Sbjct: 223 WVELNLSTRILSAIAKLGFAKPTLIQEKTIPE-ILAGEDVIGKAQTGSGKTLAFGIPIV- 280
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
E EL EE N R A++L+PTRELA
Sbjct: 281 ------------------------EKWLELYEERRNVK------REGPTAVVLSPTRELA 310
Query: 273 IQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
Q+ +HI L G T V V GG+S KQ R L K I++ATPGRLWE + G
Sbjct: 311 KQLSDHIKALCDGLPTAPYVCTVTGGLSIHKQQRQLEKA-DIVIATPGRLWEVLD-GDMS 368
Query: 331 LTELY-KINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQPRQTMIESGHFPELK 386
L + KI +LV+DE DR+ ++G F E ++I LDR +
Sbjct: 369 LQNSFTKIKFLVVDEADRLFKAGQFKEAEDIIGALDRKDPDAEDDDDNEELP-------- 420
Query: 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 446
PRQT VFSAT +L++ L ++ K+ S + ++ L L
Sbjct: 421 -------------PRQTLVFSATFDKNLQSKLAVRGKAPKAGAGSSDEEKMEYLMKSLKF 467
Query: 447 KS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLCEEIQDLLNIKS 504
+S PK +D+ + L E I C EKD YLY ++ +P RTL
Sbjct: 468 RSEPKFIDVNPASQMASGLKEGLIECGAMEKDLYLYTVLVLNPNKRTLV----------- 516
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
T I + L +LQ+ G
Sbjct: 517 -----FTNSISAVRRLAP-----------------LLQNLG------------------- 535
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
S LPLH+ M Q+ RL++++RF NSIL+ATDVAARGLDI ++ V+HYHVPR
Sbjct: 536 ----LSVLPLHSQMIQKARLRSIERFAASRNSILVATDVAARGLDIKEVDQVLHYHVPRQ 591
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
++ YIHRSGRTAR + G++V+L +E+
Sbjct: 592 ADTYIHRSGRTARGDRSGVSVILCSPEEV 620
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 11/110 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFN----------SLEKKVDLPDFPID 1287
D ++HRSGRTAR + G++++L +E+ ++ SL+++ + ID
Sbjct: 593 DTYIHRSGRTARGDRSGVSVILCSPEEVLPTRRLAGKVHAERDGSTSLKREHFIETLLID 652
Query: 1288 ESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
+ +K R+DLAK I + + +K K + D WL AA+++ + D E
Sbjct: 653 RKIAQRLKPRVDLAKRIADAVLAKEKGHSEDQWLRNAAEELGVDYDSEEF 702
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 1343 LIFESRNL-RYSWDALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRI 1399
L E RN+ R A++L+PTRELA Q+ +HI L G T V V GG+S KQ R
Sbjct: 286 LYEERRNVKREGPTAVVLSPTRELAKQLSDHIKALCDGLPTAPYVCTVTGGLSIHKQQRQ 345
Query: 1400 LNKCPHILVATPGAL 1414
L K I++ATPG L
Sbjct: 346 LEKA-DIVIATPGRL 359
>gi|428175672|gb|EKX44561.1| hypothetical protein GUITHDRAFT_109675 [Guillardia theta CCMP2712]
Length = 748
Score = 303 bits (776), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 187/525 (35%), Positives = 294/525 (56%), Gaps = 88/525 (16%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
EW + + +++AL ++GF+ PT IQ +V+P+A+ R+DI GAAETGSGKTLAF +P+L
Sbjct: 189 EWNCVMLRKCLVKALKEQGFEQPTAIQELVIPAAMAKRQDIFGAAETGSGKTLAFALPML 248
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
I++ N SG++ A+E KL L+L+PTREL
Sbjct: 249 QRILD--------SHNFSGID--AKE--------------------RKLAGLVLSPTREL 278
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
AIQV++HI+ A ++T +KV VVGG+S +KQ R L PHI+V TPGRLWE ++LG+ +L
Sbjct: 279 AIQVRDHIVAAARFTKIKVVAVVGGLSMQKQQRQLAMHPHIVVGTPGRLWEQMRLGNEYL 338
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILD----------------------RVTMTET 986
EL + LVIDE DRM+E+GHF EL+NIL+ +T +
Sbjct: 339 RELNMLLCLVIDEADRMMETGHFQELENILNLLPDLDPKAKQKRESNEEEEEEEITSFQA 398
Query: 987 SQP----------RQTFVFSATLTHSL--KNSLNLKKGQSKSKKVSKGD---PSIKRLQD 1031
++ RQT +FSATL + +++ +K+ + + + + D SI+RL D
Sbjct: 399 TKGSKLHAQRHYRRQTMIFSATLIKDIQWRSTKKVKRKEKRKQPETSADVRRQSIERLID 458
Query: 1032 LLNI-KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 1090
L + + P I DLT +++ + + ++ + GR ++F N+I
Sbjct: 459 RLQLPEEPVIFDLTPSGKVSEKIAQYRVEWR----------------GRAILFINAIGEA 502
Query: 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 1150
+R+ LL +L+ + LH+ + QRQRLKNL+ F+ +S+L+ATDVAARGLDIP + V+
Sbjct: 503 RRIANLLNLLRIRAVLLHSGLQQRQRLKNLETFKQDASSVLIATDVAARGLDIPQVSVVL 562
Query: 1151 HYHVPRTSEIYIHRSGRTARAN-NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE 1209
H+HVP+ +YIHR GRTAR EG++++ + E K+ +S ++ L D D+
Sbjct: 563 HFHVPKVPSLYIHRCGRTARGRAEEGMSIMYVTPQEQVHLQKIVDSTGFEIPLRD--DDD 620
Query: 1210 SVLSLIKKRIDLAKSIEY-LESKIKKNRPDNWLHRSGRTARANNE 1253
L+ +KR+ AK +E L +++R +WL + + + E
Sbjct: 621 VYLTSAQKRVHAAKKLEAELNKSGRESRDSSWLRQQAQAMEIDME 665
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 191/331 (57%), Gaps = 46/331 (13%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
EW + + +++AL ++GF+ PT IQ +V+P+A+ R+DI GAAETGSGKTLAF +P+L
Sbjct: 189 EWNCVMLRKCLVKALKEQGFEQPTAIQELVIPAAMAKRQDIFGAAETGSGKTLAFALPML 248
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
I++ N SG++ A+E KL L+L+PTREL
Sbjct: 249 QRILD--------SHNFSGID--AKE--------------------RKLAGLVLSPTREL 278
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
AIQV++HI+ A ++T +KV VVGG+S +KQ R L PHI+V TPGRLWE ++LG+ +L
Sbjct: 279 AIQVRDHIVAAARFTKIKVVAVVGGLSMQKQQRQLAMHPHIVVGTPGRLWEQMRLGNEYL 338
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
EL + LVIDE DRM+E+GHF EL+NIL+ + P+ + E + +
Sbjct: 339 RELNMLLCLVIDEADRMMETGHFQELENILN---LLPDLDPKAKQKRESNEEEEEEEITS 395
Query: 392 VTMTETSQ-------PRQTFVFSATLTHSL--KNSLNLKKGQSKSKKVSKGD---PSIKR 439
T+ S+ RQT +FSATL + +++ +K+ + + + + D SI+R
Sbjct: 396 FQATKGSKLHAQRHYRRQTMIFSATLIKDIQWRSTKKVKRKEKRKQPETSADVRRQSIER 455
Query: 440 LQDLLNI-KSPKIVDLTEKIGITKTLTESKI 469
L D L + + P I DLT +++ + + ++
Sbjct: 456 LIDRLQLPEEPVIFDLTPSGKVSEKIAQYRV 486
Score = 120 bits (300), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 490 RTLCEEIQDLLNI-KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
R E + D L + + P I DLT +++ + + ++ + GR +
Sbjct: 450 RQSIERLIDRLQLPEEPVIFDLTPSGKVSEKIAQYRVEWR----------------GRAI 493
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608
+F N+I +R+ LL +L+ + LH+ + QRQRLKNL+ F+ +S+L+ATDVAARGL
Sbjct: 494 LFINAIGEARRIANLLNLLRIRAVLLHSGLQQRQRLKNLETFKQDASSVLIATDVAARGL 553
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARAN-NEGLTVVLIESDE 652
DIP + V+H+HVP+ +YIHR GRTAR EG++++ + E
Sbjct: 554 DIPQVSVVLHFHVPKVPSLYIHRCGRTARGRAEEGMSIMYVTPQE 598
Score = 77.0 bits (188), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L+PTRELAIQV++HI+ A ++T +KV VVGG+S +KQ R L PHI+V TPG L
Sbjct: 269 GLVLSPTRELAIQVRDHIVAAARFTKIKVVAVVGGLSMQKQQRQLAMHPHIVVGTPGRL 327
>gi|380478434|emb|CCF43606.1| DEAD/DEAH box helicase [Colletotrichum higginsianum]
Length = 779
Score = 303 bits (776), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 192/503 (38%), Positives = 271/503 (53%), Gaps = 58/503 (11%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+ M WV + + A+ + F PTKIQ+ +P +LA D++G A TGSGKTLAF
Sbjct: 211 LDMTPWVDLGLSPATVSAIAKLKFAKPTKIQASTIPE-ILAGHDVIGKASTGSGKTLAFS 269
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPI+ ++K E ++ D G E+A+ N ALIL+P
Sbjct: 270 IPIVEDWLDKYE-----EKADGGKPEKAD---------------------NTPLALILSP 303
Query: 885 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942
TRELA Q+ NHI L AG V V GG+S KQ R L K I++ TPGRLWE I
Sbjct: 304 TRELAHQITNHIKNLCAGLVNAPFVCSVTGGLSVFKQQRQLAKA-DIVIGTPGRLWEVIS 362
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV-----------TMTETSQPRQ 991
L +I YLV+DE DR++ GHF E ILD + ++ RQ
Sbjct: 363 GSRELLAGFRQIRYLVVDEADRLLSEGHFKEAGEILDALDREVIEEDDDDDDEKSLSARQ 422
Query: 992 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGI 1049
T VFSAT L+ L G+ K +S+ + S++ L LN + PK +D+ +
Sbjct: 423 TLVFSATFHQGLQQKL---AGKGKWGLMSE-EESMEYLLKKLNFREEKPKFIDVNPAKQM 478
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
L E I C EKD YLY IL +P R TLVF NSIS+V+RL L L + LH
Sbjct: 479 ASGLKEGLIECGGMEKDLYLYTVILLNPNRRTLVFTNSISAVRRLAPFLQNLNINATALH 538
Query: 1109 ASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
+ M Q+ RL+++++F + ++L+ATDVAARGLDIPGI+ VIHYHVPR +++Y+HRS
Sbjct: 539 SQMAQKARLRSVEKFTATKPNTTAVLIATDVAARGLDIPGIDQVIHYHVPRAADMYVHRS 598
Query: 1166 GRTARANNEGLTLVLIESDEI------PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1219
GRTARA GL+++L +E+ + + +KK + ID + S +K R+
Sbjct: 599 GRTARAERTGLSIILCGPEEVVPTRRLAAKVHAGQASKKKYFMRTIDIDRRIASRLKPRV 658
Query: 1220 DLAKSI-EYLESKIKKNRPDNWL 1241
DLAK + + +K K + ++W+
Sbjct: 659 DLAKKLTDATLAKEKGTKDEDWV 681
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/347 (35%), Positives = 168/347 (48%), Gaps = 53/347 (15%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+ M WV + + A+ + F PTKIQ+ +P +LA D++G A TGSGKTLAF
Sbjct: 211 LDMTPWVDLGLSPATVSAIAKLKFAKPTKIQASTIPE-ILAGHDVIGKASTGSGKTLAFS 269
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IPI+ ++K E ++ D G E+A+ N ALIL+P
Sbjct: 270 IPIVEDWLDKYE-----EKADGGKPEKAD---------------------NTPLALILSP 303
Query: 268 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 325
TRELA Q+ NHI L AG V V GG+S KQ R L K I++ TPGRLWE I
Sbjct: 304 TRELAHQITNHIKNLCAGLVNAPFVCSVTGGLSVFKQQRQLAKA-DIVIGTPGRLWEVIS 362
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385
L +I YLV+DE DR++ GHF E ILD + R+ + E +
Sbjct: 363 GSRELLAGFRQIRYLVVDEADRLLSEGHFKEAGEILDALD-------REVIEEDDDDDDE 415
Query: 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 445
K++ RQT VFSAT L+ L G+ K +S+ + S++ L LN
Sbjct: 416 KSL----------SARQTLVFSATFHQGLQQKL---AGKGKWGLMSE-EESMEYLLKKLN 461
Query: 446 IKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
+ PK +D+ + L E I C EKD YLY IL +P R
Sbjct: 462 FREEKPKFIDVNPAKQMASGLKEGLIECGGMEKDLYLYTVILLNPNR 508
Score = 154 bits (389), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQL 563
PK +D+ + L E I C EKD YLY IL +P R TLVF NSIS+V+RL
Sbjct: 467 PKFIDVNPAKQMASGLKEGLIECGGMEKDLYLYTVILLNPNRRTLVFTNSISAVRRLAPF 526
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHVIHYH 620
L L + LH+ M Q+ RL+++++F + ++L+ATDVAARGLDIPGI+ VIHYH
Sbjct: 527 LQNLNINATALHSQMAQKARLRSVEKFTATKPNTTAVLIATDVAARGLDIPGIDQVIHYH 586
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
VPR +++Y+HRSGRTARA GL+++L +E+
Sbjct: 587 VPRAADMYVHRSGRTARAERTGLSIILCGPEEV 619
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI------PLYIKMFNSLEKKVDLPDFPIDESVL 1291
D ++HRSGRTARA GL+++L +E+ + + +KK + ID +
Sbjct: 592 DMYVHRSGRTARAERTGLSIILCGPEEVVPTRRLAAKVHAGQASKKKYFMRTIDIDRRIA 651
Query: 1292 SLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
S +K R+DLAK + + +K K + ++W++ AA+++ + D E L
Sbjct: 652 SRLKPRVDLAKKLTDATLAKEKGTKDEDWVKAAAEELGVEYDSEEL 697
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
ALIL+PTRELA Q+ NHI L AG V V GG+S KQ R L K I++ TPG
Sbjct: 298 ALILSPTRELAHQITNHIKNLCAGLVNAPFVCSVTGGLSVFKQQRQLAKA-DIVIGTPGR 356
Query: 1414 L 1414
L
Sbjct: 357 L 357
>gi|213406505|ref|XP_002174024.1| ATP-dependent RNA helicase mak5 [Schizosaccharomyces japonicus
yFS275]
gi|212002071|gb|EEB07731.1| ATP-dependent RNA helicase mak5 [Schizosaccharomyces japonicus
yFS275]
Length = 695
Score = 303 bits (776), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 204/602 (33%), Positives = 310/602 (51%), Gaps = 96/602 (15%)
Query: 663 EEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVS---------------- 706
EE+ + +E + ++ LKRKQ+P E +
Sbjct: 65 EEKTDRKEAKQNSN-----------------LKRKQSPESQETNLKKKQGKKSKKNKAER 107
Query: 707 ELSANTNDPDDQVNKTEEIQ----SDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNED 762
+L + T D EEI+ E S QK +++SA+ + +E
Sbjct: 108 QLKSETGGDD-----AEEIEFTGFGSEDDSDSTTQK-----SHSSASGNEFQALEDEDEA 157
Query: 763 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822
V +++W + I+ L + GF PT IQ +V+P A +A D++G AETGSGKTLA
Sbjct: 158 NAVDVSKWSNIPLSAAILGRLSKLGFSAPTHIQELVLPVA-MAGSDVIGKAETGSGKTLA 216
Query: 823 FGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK-LYALI 881
FGIPIL E + NK + ALI
Sbjct: 217 FGIPIL---------------------------------------EHCLRNINKGIQALI 237
Query: 882 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
+APTRELA Q+ NH+ T + + V GG++ +KQ R+L K P I++ TPGRLW I
Sbjct: 238 MAPTRELAQQIYNHLEQCNPSTDIHIVTVTGGLAIQKQQRLLAKKPSIVIGTPGRLWSVI 297
Query: 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001
F E + LV+DE DR+++ HF EL NI+D + + + RQTF+FSAT
Sbjct: 298 SSQGFD-EEFKNVKMLVLDEADRLLQKNHFEELHNIIDLLGNPKQTN-RQTFIFSATFDA 355
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
L+ +L K+ + K S G L+ + + P+ +D + + +TE + C
Sbjct: 356 HLQENLRKKQLIDGNDKQSMG----YLLKQIHFLGRPEFLDANPETSVATKVTEGLVECI 411
Query: 1062 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
+KD YLYYF+L++PG+T+VF N + VKR+T LL L L+A M Q++RL+ L+
Sbjct: 412 PSQKDLYLYYFLLRYPGKTIVFANGVEDVKRVTPLLKELGVKAHSLYAQMEQKKRLQALE 471
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
RF+ + ++IL+ATDVAARG+DIP ++HVIHYHVP T+++YIHRSGRTAR +GL +++
Sbjct: 472 RFKSEKDAILIATDVAARGIDIPSVKHVIHYHVPHTADMYIHRSGRTARGTEQGLAILMC 531
Query: 1182 ESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKKRIDLA-KSIEYLESKIKKNRPDN 1239
E+ K+ L++ +D L FP+D +L + R+DL K ++ + + R +
Sbjct: 532 GPKELNQLKKLLYRLKRNLDELTTFPVDVELLGRFQPRVDLGHKIVDLMRQDGRLGREEA 591
Query: 1240 WL 1241
WL
Sbjct: 592 WL 593
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 202/655 (30%), Positives = 298/655 (45%), Gaps = 174/655 (26%)
Query: 20 GVKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKR 79
GV+ K + LK V KP+ ++ EE+ + EA + LKR
Sbjct: 35 GVEVKYESAGKLKMPVYELVKPDTDAKKSAEEKTDRKEA-------------KQNSNLKR 81
Query: 80 KQNPSQVEVS----------------ELSANTNDPDDQVNKTEEIQ----SDEPSSKKLK 119
KQ+P E + +L + T D EEI+ E S
Sbjct: 82 KQSPESQETNLKKKQGKKSKKNKAERQLKSETGGDD-----AEEIEFTGFGSEDDSDSTT 136
Query: 120 QKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQS 179
QK +++SA+ + +E V +++W + I+ L + GF PT IQ
Sbjct: 137 QK-----SHSSASGNEFQALEDEDEANAVDVSKWSNIPLSAAILGRLSKLGFSAPTHIQE 191
Query: 180 MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 239
+V+P A+ A D++G AETGSGKTLAFGIPIL
Sbjct: 192 LVLPVAM-AGSDVIGKAETGSGKTLAFGIPIL---------------------------- 222
Query: 240 EELEEESANTTEFVKKTRNK-LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS 298
E + NK + ALI+APTRELA Q+ NH+ T + + V GG++
Sbjct: 223 -----------EHCLRNINKGIQALIMAPTRELAQQIYNHLEQCNPSTDIHIVTVTGGLA 271
Query: 299 TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELK 358
+KQ R+L K P I++ TPGRLW I F E + LV+DE DR+++ HF EL
Sbjct: 272 IQKQQRLLAKKPSIVIGTPGRLWSVISSQGFD-EEFKNVKMLVLDEADRLLQKNHFEELH 330
Query: 359 NILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 418
NI+D + P+QT RQTF+FSAT L+
Sbjct: 331 NIIDLL-----GNPKQT------------------------NRQTFIFSATFDAHLQE-- 359
Query: 419 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 478
N++ +++D +K + L + L
Sbjct: 360 --------------------------NLRKKQLIDGNDKQSMGYLLKQIHFL-------- 385
Query: 479 YLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 538
GR P+ +D + + +TE + C +KD YLYY
Sbjct: 386 ----------GR--------------PEFLDANPETSVATKVTEGLVECIPSQKDLYLYY 421
Query: 539 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598
F+L++PG+T+VF N + VKR+T LL L L+A M Q++RL+ L+RF+ + ++IL
Sbjct: 422 FLLRYPGKTIVFANGVEDVKRVTPLLKELGVKAHSLYAQMEQKKRLQALERFKSEKDAIL 481
Query: 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+ATDVAARG+DIP ++HVIHYHVP T+++YIHRSGRTAR +GL +++ E+
Sbjct: 482 IATDVAARGIDIPSVKHVIHYHVPHTADMYIHRSGRTARGTEQGLAILMCGPKEL 536
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 1348 RNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 1407
RN+ ALI+APTRELA Q+ NH+ T + + V GG++ +KQ R+L K P I+
Sbjct: 227 RNINKGIQALIMAPTRELAQQIYNHLEQCNPSTDIHIVTVTGGLAIQKQQRLLAKKPSIV 286
Query: 1408 VATPGAL 1414
+ TPG L
Sbjct: 287 IGTPGRL 293
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKK 1296
D ++HRSGRTAR +GL +++ E+ K+ L++ +D L FP+D +L +
Sbjct: 509 DMYIHRSGRTARGTEQGLAILMCGPKELNQLKKLLYRLKRNLDELTTFPVDVELLGRFQP 568
Query: 1297 RIDLA-KSIEYLESKIKKNRPDNWLEKAAKDMDI 1329
R+DL K ++ + + R + WL+ AA+++ +
Sbjct: 569 RVDLGHKIVDLMRQDGRLGREEAWLKAAAEELGL 602
>gi|310800598|gb|EFQ35491.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 777
Score = 303 bits (776), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 198/513 (38%), Positives = 273/513 (53%), Gaps = 61/513 (11%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
+ D + M WV + ++ A+ + F PT IQS +P +LA D++G A TGSGK
Sbjct: 197 DADEDLDMTPWVDLGLSPALVAAIAKLKFAKPTNIQSSTIPD-ILAGHDVIGKASTGSGK 255
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879
TLAF IPI+ V+K + D N G E K N +A
Sbjct: 256 TLAFSIPIVEEWVDKHDG----DGNADG--------------------ERPSKPDNTPFA 291
Query: 880 LILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
LIL+PTRELA Q+ NHI L AG V V GG+S KQ R L K I++ TPGRL
Sbjct: 292 LILSPTRELAHQITNHIKNLCAGLLNAPFVCSVTGGLSVFKQQRQLAKA-DIVIGTPGRL 350
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD---RVTMTETSQP----- 989
WE I L KI YLV+DE DR++ GHF E ILD R + + +
Sbjct: 351 WEVISGSRELLAGFRKIRYLVVDEADRLLSEGHFKEAGQILDALDREVIEDEGEDYDNEK 410
Query: 990 ----RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDL 1043
RQT VFSAT L+ L G+ K +S+ + S++ L LN + PK +D+
Sbjct: 411 GLSDRQTLVFSATFHQGLQQKL---AGKGKWGLMSEKE-SMEYLLKKLNFREEKPKFIDV 466
Query: 1044 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKC 1102
+ L E I C EKD YLY IL +P R TLVF NSIS+V+RL L L
Sbjct: 467 NPAKQMAAGLKEGLIECGAMEKDLYLYTVILLNPNRRTLVFTNSISAVRRLAPFLQNLNI 526
Query: 1103 SPLPLHASMNQRQRLKNLDRFRDQ---NNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
+ LH+ M Q+ RL++++RF+ ++L+ATDVAARGLDIPGI+ VIHYHVPR ++
Sbjct: 527 NATALHSQMAQKARLRSIERFKASKPNTTAVLIATDVAARGLDIPGIDQVIHYHVPRAAD 586
Query: 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL----------EKKVDLPDFPIDE 1209
+Y+HRSGRTARA GL+++L DE+ ++ + +KK + ID
Sbjct: 587 MYVHRSGRTARAERTGLSIILCGPDEVVPTRRLAAKVHAEQHEQATGKKKYLMRTIDIDR 646
Query: 1210 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
+ S +K R+DLAK + + +K K + ++W+
Sbjct: 647 RIASRLKPRVDLAKKLTDATLAKEKGTKDEDWV 679
Score = 172 bits (435), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/353 (36%), Positives = 169/353 (47%), Gaps = 52/353 (14%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
+ D + M WV + ++ A+ + F PT IQS +P +LA D++G A TGSGK
Sbjct: 197 DADEDLDMTPWVDLGLSPALVAAIAKLKFAKPTNIQSSTIPD-ILAGHDVIGKASTGSGK 255
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262
TLAF IPI+ V+K + D N G E K N +A
Sbjct: 256 TLAFSIPIVEEWVDKHDG----DGNADG--------------------ERPSKPDNTPFA 291
Query: 263 LILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
LIL+PTRELA Q+ NHI L AG V V GG+S KQ R L K I++ TPGRL
Sbjct: 292 LILSPTRELAHQITNHIKNLCAGLLNAPFVCSVTGGLSVFKQQRQLAKA-DIVIGTPGRL 350
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
WE I L KI YLV+DE DR++ GHF E ILD + R+ + + G
Sbjct: 351 WEVISGSRELLAGFRKIRYLVVDEADRLLSEGHFKEAGQILDALD-------REVIEDEG 403
Query: 381 H-FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
+ K + D RQT VFSAT L+ L G+ K +S+ + S++
Sbjct: 404 EDYDNEKGLSD----------RQTLVFSATFHQGLQQKL---AGKGKWGLMSEKE-SMEY 449
Query: 440 LQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
L LN + PK +D+ + L E I C EKD YLY IL +P R
Sbjct: 450 LLKKLNFREEKPKFIDVNPAKQMAAGLKEGLIECGAMEKDLYLYTVILLNPNR 502
Score = 159 bits (403), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 125/195 (64%), Gaps = 9/195 (4%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQL 563
PK +D+ + L E I C EKD YLY IL +P R TLVF NSIS+V+RL
Sbjct: 461 PKFIDVNPAKQMAAGLKEGLIECGAMEKDLYLYTVILLNPNRRTLVFTNSISAVRRLAPF 520
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQ---NNSILLATDVAARGLDIPGIEHVIHYH 620
L L + LH+ M Q+ RL++++RF+ ++L+ATDVAARGLDIPGI+ VIHYH
Sbjct: 521 LQNLNINATALHSQMAQKARLRSIERFKASKPNTTAVLIATDVAARGLDIPGIDQVIHYH 580
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKE-- 678
VPR +++Y+HRSGRTARA GL+++L DE+ + T+ L + + E+ E+A K+
Sbjct: 581 VPRAADMYVHRSGRTARAERTGLSIILCGPDEV-VPTR-RLAAKVHAEQHEQATGKKKYL 638
Query: 679 -KTEDINVTVSSKKK 692
+T DI+ ++S+ K
Sbjct: 639 MRTIDIDRRIASRLK 653
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
ALIL+PTRELA Q+ NHI L AG V V GG+S KQ R L K I++ TPG
Sbjct: 291 ALILSPTRELAHQITNHIKNLCAGLLNAPFVCSVTGGLSVFKQQRQLAKA-DIVIGTPGR 349
Query: 1414 L 1414
L
Sbjct: 350 L 350
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 11/110 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL----------EKKVDLPDFPID 1287
D ++HRSGRTARA GL+++L DE+ ++ + +KK + ID
Sbjct: 586 DMYVHRSGRTARAERTGLSIILCGPDEVVPTRRLAAKVHAEQHEQATGKKKYLMRTIDID 645
Query: 1288 ESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
+ S +K R+DLAK + + +K K + ++W+ AA ++ + D + L
Sbjct: 646 RRIASRLKPRVDLAKKLTDATLAKEKGTKDEDWVRAAADELGVEYDSDEL 695
>gi|119601956|gb|EAW81550.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, isoform CRA_a [Homo
sapiens]
Length = 670
Score = 303 bits (775), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 168/376 (44%), Positives = 236/376 (62%), Gaps = 26/376 (6%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 472 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 531
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 532 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 588
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 589 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 648
Query: 1139 RGLDIPGIEHVIHYHV 1154
RGLDIP ++HVIHY V
Sbjct: 649 RGLDIPKVQHVIHYQV 664
Score = 268 bits (684), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 169/460 (36%), Positives = 238/460 (51%), Gaps = 110/460 (23%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 472 EADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQT 503
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 504 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 545
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 546 G-----------------------------------------KPKVIDLTRNEATVETLT 564
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 565 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 624
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY V
Sbjct: 625 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQV 664
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 390 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 448
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 245
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 245
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 246 AFAIPMIHAVLQ 257
>gi|358389222|gb|EHK26814.1| hypothetical protein TRIVIDRAFT_175608 [Trichoderma virens Gv29-8]
Length = 770
Score = 303 bits (775), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 214/608 (35%), Positives = 314/608 (51%), Gaps = 94/608 (15%)
Query: 689 SKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQT---- 744
SK K+ + Q P V + D E +S + ++K + K++KK+
Sbjct: 100 SKHKQGEPAQGPGDGPVEGEDVHPGQAGDSQGGVESKRSQKKAARKDRAKEQKKEADNKH 159
Query: 745 ------YTSANKELLEVDT----SNNEDMFVQ----------MAEWVKFNIPETIIRALY 784
+A KEL + + N+ D + M WV+ N+ + A+
Sbjct: 160 KSRDGKLATAEKELQKPASHKQQGNSFDALMAVDDAAAEEADMGAWVELNLSTRTVSAIA 219
Query: 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844
+ GF PT IQ +P +LA D++G A+TGSGKTLAFGIPI+
Sbjct: 220 KLGFSKPTLIQQKTIPE-ILAGDDVIGKAQTGSGKTLAFGIPIV---------------- 262
Query: 845 DSGLEEEAEEVLEELEEESANTTEFVKKT---RNKLYALILAPTRELAIQVQNHI--LDA 899
E+ LE +V KT R A++L+PTRELA Q+ +HI L
Sbjct: 263 --------EKWLEL----------YVDKTNVKREGPTAVVLSPTRELAKQISDHIKALCD 304
Query: 900 GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY-KINYLV 958
G T V V GG+S KQ R L K I++ATPGRLWE + G L + + KI +LV
Sbjct: 305 GLPTAPYVCTVTGGLSIHKQQRQLEKA-DIVIATPGRLWEVLD-GDMSLQDSFTKIKFLV 362
Query: 959 IDETDRMIESGHFPELKNI---LDR------VTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+DE DR+ ++G F E ++I LDR + PRQT VFSAT +L++ L
Sbjct: 363 VDEADRLFKAGQFKEAEDIIGALDRRDPEADDEDDDELPPRQTLVFSATFDKNLQSKL-- 420
Query: 1010 KKGQSKSKKVSKG--DPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKD 1066
G+ K K + G + ++ L L + PK +D+ + L E I C EKD
Sbjct: 421 -AGRGKGSKAAAGSDEEKMEYLMKCLKFRGQPKFIDVNPVSQMADGLKEGLIECGAMEKD 479
Query: 1067 SYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
YLY ++ +PGR TLVF NSIS+V+RLT LL L S LPLH+ M Q+ RL++++RF
Sbjct: 480 LYLYTVLVLNPGRRTLVFTNSISAVRRLTPLLQNLGLSALPLHSQMIQKARLRSIERFAA 539
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+NSIL+ATDVAARGLDI ++ V+HYHVPR ++ YIHRSGRTAR + G++++L +E
Sbjct: 540 ASNSILVATDVAARGLDIKEVDQVLHYHVPRQADTYIHRSGRTARGDRSGVSVILCSPEE 599
Query: 1186 IPLYIKMFNSLEKKVD----------LPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKK 1234
+ ++ + + + + + ID + + +K R+DLAK I + + +K K
Sbjct: 600 VLPTRRLASKVHAEREGGSGVKREHFIETLSIDRKIAARLKSRVDLAKRIADAVLAKEKG 659
Query: 1235 NRPDNWLH 1242
+ D WL
Sbjct: 660 HSEDTWLR 667
Score = 270 bits (690), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 202/613 (32%), Positives = 291/613 (47%), Gaps = 143/613 (23%)
Query: 72 SKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQT---- 127
SK K+ + Q P V + D E +S + +++K + K++KK+
Sbjct: 100 SKHKQGEPAQGPGDGPVEGEDVHPGQAGDSQGGVESKRSQKKAARKDRAKEQKKEADNKH 159
Query: 128 ------YTSANKELLEVDT----SNNEDMFVQ----------MAEWVKFNIPETIIRALY 167
+A KEL + + N+ D + M WV+ N+ + A+
Sbjct: 160 KSRDGKLATAEKELQKPASHKQQGNSFDALMAVDDAAAEEADMGAWVELNLSTRTVSAIA 219
Query: 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227
+ GF PT IQ +P +LA D++G A+TGSGKTLAFGIPI+
Sbjct: 220 KLGFSKPTLIQQKTIPE-ILAGDDVIGKAQTGSGKTLAFGIPIV---------------- 262
Query: 228 DSGLEEEAEEVLEELEEESANTTEFVKKT---RNKLYALILAPTRELAIQVQNHI--LDA 282
E+ LE +V KT R A++L+PTRELA Q+ +HI L
Sbjct: 263 --------EKWLEL----------YVDKTNVKREGPTAVVLSPTRELAKQISDHIKALCD 304
Query: 283 GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY-KINYLV 341
G T V V GG+S KQ R L K I++ATPGRLWE + G L + + KI +LV
Sbjct: 305 GLPTAPYVCTVTGGLSIHKQQRQLEKA-DIVIATPGRLWEVLD-GDMSLQDSFTKIKFLV 362
Query: 342 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPR 401
+DE DR+ ++G F E ++I+ + + ++ + PR
Sbjct: 363 VDEADRLFKAGQFKEAEDIIGAL-------------------DRRDPEADDEDDDELPPR 403
Query: 402 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
QT VFSAT +L++ L G+ K K + G
Sbjct: 404 QTLVFSATFDKNLQSKL---AGRGKGSKAAAGS--------------------------- 433
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
+EK YL L+ G+ PK +D+ + L
Sbjct: 434 -----------DEEKMEYLMK-CLKFRGQ--------------PKFIDVNPVSQMADGLK 467
Query: 522 ESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 580
E I C EKD YLY ++ +PGR TLVF NSIS+V+RLT LL L S LPLH+ M Q
Sbjct: 468 EGLIECGAMEKDLYLYTVLVLNPGRRTLVFTNSISAVRRLTPLLQNLGLSALPLHSQMIQ 527
Query: 581 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 640
+ RL++++RF +NSIL+ATDVAARGLDI ++ V+HYHVPR ++ YIHRSGRTAR +
Sbjct: 528 KARLRSIERFAAASNSILVATDVAARGLDIKEVDQVLHYHVPRQADTYIHRSGRTARGDR 587
Query: 641 EGLTVVLIESDEI 653
G++V+L +E+
Sbjct: 588 SGVSVILCSPEEV 600
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 11/110 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD----------LPDFPID 1287
D ++HRSGRTAR + G++++L +E+ ++ + + + + + ID
Sbjct: 573 DTYIHRSGRTARGDRSGVSVILCSPEEVLPTRRLASKVHAEREGGSGVKREHFIETLSID 632
Query: 1288 ESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
+ + +K R+DLAK I + + +K K + D WL AA+++ + D E
Sbjct: 633 RKIAARLKSRVDLAKRIADAVLAKEKGHSEDTWLRNAAEELGVDYDSEEF 682
Score = 49.3 bits (116), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
A++L+PTRELA Q+ +HI L G T V V GG+S KQ R L K I++ATPG
Sbjct: 282 AVVLSPTRELAKQISDHIKALCDGLPTAPYVCTVTGGLSIHKQQRQLEKA-DIVIATPGR 340
Query: 1414 L 1414
L
Sbjct: 341 L 341
>gi|62088344|dbj|BAD92619.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 variant [Homo sapiens]
Length = 676
Score = 302 bits (774), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 168/376 (44%), Positives = 236/376 (62%), Gaps = 26/376 (6%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 308 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 360
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 361 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 417
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 418 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 477
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 478 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 537
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 538 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 594
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 595 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 654
Query: 1139 RGLDIPGIEHVIHYHV 1154
RGLDIP ++HVIHY V
Sbjct: 655 RGLDIPKVQHVIHYQV 670
Score = 267 bits (682), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 169/460 (36%), Positives = 238/460 (51%), Gaps = 110/460 (23%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 223
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 308 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 360
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 361 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 417
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 418 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 477
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403
E DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 478 EADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPKRQT 509
Query: 404 FVFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
VFSAT L H + KK K K + K+ L +KIG+
Sbjct: 510 LVFSATLTLVHQAPARILHKKHTKKMDKTA------------------KLDLLMQKIGMR 551
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
PK++DLT +TLT
Sbjct: 552 G-----------------------------------------KPKVIDLTRNEATVETLT 570
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+
Sbjct: 571 ETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 630
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621
QRL+NL++F + +LLATDVAARGLDIP ++HVIHY V
Sbjct: 631 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQV 670
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 396 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 454
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 192 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 251
Query: 205 AFGIPILTGIVN 216
AF IP++ ++
Sbjct: 252 AFAIPMIHAVLQ 263
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 192 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 251
Query: 822 AFGIPILTGIVN 833
AF IP++ ++
Sbjct: 252 AFAIPMIHAVLQ 263
>gi|320581609|gb|EFW95829.1| Essential nucleolar protein, putative DEAD-box RNA helicase [Ogataea
parapolymorpha DL-1]
Length = 705
Score = 302 bits (773), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 184/504 (36%), Positives = 272/504 (53%), Gaps = 70/504 (13%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V + EW N+ + ++ L + GF+ PT+IQ +P A+ KD++G A TGSGKTLA+G
Sbjct: 155 VDLPEWSSLNLSASTLQGLQKLGFQKPTEIQKATIPLAVDG-KDVIGKAITGSGKTLAYG 213
Query: 825 IPIL-TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
IPIL + NK E+ L +I
Sbjct: 214 IPILEKALSNKQEH---------------------------------------LNGIIFT 234
Query: 884 PTRELAIQVQNHILDAGKYTPV---KVACVVGGMSTEKQLRILNKCPHILVATPGRLWEF 940
PTRELA QV H+ + KYTP V + GG+S +KQ R+L P ++VATPGR E
Sbjct: 235 PTRELANQVMKHLQELFKYTPFHDKAVISLTGGLSIQKQERLLGYKPRVVVATPGRFLEI 294
Query: 941 IQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR------QTFV 994
++ + +L + LV DE DR+++ GHF EL IL+ + +P+ Q+ V
Sbjct: 295 LEKKTENAVQLASADILVCDEADRLLQDGHFDELGKILE---ILHNHRPKVQGHKFQSLV 351
Query: 995 FSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTL 1053
FSAT + L L ++K +K L L +S P+ VD+ + ++
Sbjct: 352 FSATFSQDLFGKLE----KAKKHVFDSEQAIVKMLSKHLKFRSKPEYVDVNPTEIVAHSI 407
Query: 1054 TESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
TE+ I C E+D LYYF+ PG TLVF N+I SVKRL +L L + LH+SM Q
Sbjct: 408 TEAMIPCGAQERDLMLYYFLTMFPGVTLVFANAIDSVKRLAPMLNNLGIPTVSLHSSMIQ 467
Query: 1114 RQRLKNLDRF--------RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
+QRL++L+RF +++ +S+L+A+DVAARGLDIPGI HV+HYH+PRT++ YIHRS
Sbjct: 468 KQRLRSLERFKANSEKAIKEKKSSVLIASDVAARGLDIPGIHHVVHYHIPRTADTYIHRS 527
Query: 1166 GRTARANNEGLTLVLIESDEI--PLYIKMFNSLEKKV-DLPDFPIDESVLSLIKKRIDLA 1222
GRTARA EG++++L +E PL K+V DL P++ +L +++R+DL+
Sbjct: 528 GRTARAGREGVSVILCSPNEASGPLKQLRRTVANKEVDDLKTLPLEMDILDQLRERLDLS 587
Query: 1223 KSIEYLE-SKIKKNRPDNWLHRSG 1245
+ E S N+ W+ ++
Sbjct: 588 AKLAQAELSSQIVNKEKTWIEKAA 611
Score = 273 bits (698), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 181/524 (34%), Positives = 255/524 (48%), Gaps = 140/524 (26%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V + EW N+ + ++ L + GF+ PT+IQ +P A+ KD++G A TGSGKTLA+G
Sbjct: 155 VDLPEWSSLNLSASTLQGLQKLGFQKPTEIQKATIPLAVDG-KDVIGKAITGSGKTLAYG 213
Query: 208 IPIL-TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
IPIL + NK E+ L +I
Sbjct: 214 IPILEKALSNKQEH---------------------------------------LNGIIFT 234
Query: 267 PTRELAIQVQNHILDAGKYTPV---KVACVVGGMSTEKQLRILNKCPHILVATPGRLWEF 323
PTRELA QV H+ + KYTP V + GG+S +KQ R+L P ++VATPGR E
Sbjct: 235 PTRELANQVMKHLQELFKYTPFHDKAVISLTGGLSIQKQERLLGYKPRVVVATPGRFLEI 294
Query: 324 IQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
++ + +L + LV DE DR+++ GHF EL IL+ I H P
Sbjct: 295 LEKKTENAVQLASADILVCDEADRLLQDGHFDELGKILE--------------ILHNHRP 340
Query: 384 ELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL 443
+++ Q+ VFSAT + L L K+KK
Sbjct: 341 KVQG-----------HKFQSLVFSATFSQDLFGKLE------KAKK-------------- 369
Query: 444 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
+ D + I K+L KH L +
Sbjct: 370 ------HVFDSEQAI--------VKMLSKH--------------------------LKFR 389
Query: 504 S-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 562
S P+ VD+ + ++TE+ I C E+D LYYF+ PG TLVF N+I SVKRL
Sbjct: 390 SKPEYVDVNPTEIVAHSITEAMIPCGAQERDLMLYYFLTMFPGVTLVFANAIDSVKRLAP 449
Query: 563 LLTMLKCSPLPLHASMNQRQRLKNLDRFR--------DQNNSILLATDVAARGLDIPGIE 614
+L L + LH+SM Q+QRL++L+RF+ ++ +S+L+A+DVAARGLDIPGI
Sbjct: 450 MLNNLGIPTVSLHSSMIQKQRLRSLERFKANSEKAIKEKKSSVLIASDVAARGLDIPGIH 509
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI--PLK 656
HV+HYH+PRT++ YIHRSGRTARA EG++V+L +E PLK
Sbjct: 510 HVVHYHIPRTADTYIHRSGRTARAGREGVSVILCSPNEASGPLK 553
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 18/108 (16%)
Query: 1355 DALILAPTRELAIQVQNHILDAGKYTPV---KVACVVGGMSTEKQLRILNKCPHILVATP 1411
+ +I PTRELA QV H+ + KYTP V + GG+S +KQ R+L P ++VATP
Sbjct: 229 NGIIFTPTRELANQVMKHLQELFKYTPFHDKAVISLTGGLSIQKQERLLGYKPRVVVATP 288
Query: 1412 GALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1459
G + +E LE K +N ++ A+ D+ + + + L+Q
Sbjct: 289 G----------RFLEILEKKT-----ENAVQLASADILVCDEADRLLQ 321
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLYIKMFNSLEKKV-DLPDFPIDESVLSLI 1294
D ++HRSGRTARA EG++++L +E PL K+V DL P++ +L +
Sbjct: 521 DTYIHRSGRTARAGREGVSVILCSPNEASGPLKQLRRTVANKEVDDLKTLPLEMDILDQL 580
Query: 1295 KKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDI 1329
++R+DL+ + E S N+ W+EKAA D+ I
Sbjct: 581 RERLDLSAKLAQAELSSQIVNKEKTWIEKAADDLGI 616
>gi|91207159|sp|Q2UMY7.1|MAK5_ASPOR RecName: Full=ATP-dependent RNA helicase mak5
gi|83766938|dbj|BAE57078.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 757
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 196/523 (37%), Positives = 280/523 (53%), Gaps = 71/523 (13%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
ED ++ W + I+ + + F TPT +Q +P L R D++G A TGSGKT
Sbjct: 177 EDDGADVSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGR-DVIGKASTGSGKT 235
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFGIPIL + KL + T++D +KT AL
Sbjct: 236 LAFGIPILEYYLEKLRSKTQKDS---------------------------EKTETTPIAL 268
Query: 881 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
+L+PTRELA Q+ HI + + P ++A + GG+S +KQ R+L I++ TPGR+
Sbjct: 269 VLSPTRELAHQLAKHIGEVVSHAPGVNARIALLTGGLSLQKQQRVLTNA-DIVIGTPGRV 327
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---DRVTMTE--------- 985
WE + GH + ++ I +LVIDE DR++ GHF E IL DRV E
Sbjct: 328 WEVLSSGHGLIRKMQAIKFLVIDEADRLLSEGHFKEAHEILAALDRVVDGEFPDESSDES 387
Query: 986 -----TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--P 1038
RQT VFSAT L+ L KG+ + S++ L LN + P
Sbjct: 388 DDELDPKSGRQTLVFSATFHRDLQQKL-AGKGKWTGGDIMSQKESMEYLLQKLNFREEKP 446
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLL 1097
+ +D+ + + L E + C EKD +LY +L HP RTLVF NSIS+V+RLTQLL
Sbjct: 447 RFIDVNPVSQMAENLKEGIVECAAMEKDLFLYTLLLYHPKHRTLVFTNSISAVRRLTQLL 506
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGIEHVIHYHV 1154
L+ L LH+SM Q+ RL++++RF ++ IL+ATDVAARGLDI GI+ V+HYH
Sbjct: 507 QTLQLPALALHSSMAQKARLRSVERFSSPSSDPSSILVATDVAARGLDIKGIDFVVHYHA 566
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPID 1208
PRT++ Y+HRSGRTARA G ++++ DE+ +++ + KKV L +D
Sbjct: 567 PRTADAYVHRSGRTARAGASGKSVIICSPDEMVGVVRLAAKVHANMANRKKVPLESLELD 626
Query: 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWLHRSGRTA 1248
V+S +K+R+ LA I ++S I K + DNWL RTA
Sbjct: 627 RRVVSRVKQRVTLAARI--VDSNIAKEKVSSEDNWL----RTA 663
Score = 267 bits (682), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 181/521 (34%), Positives = 254/521 (48%), Gaps = 110/521 (21%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
ED ++ W + I+ + + F TPT +Q +P L R D++G A TGSGKT
Sbjct: 177 EDDGADVSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGR-DVIGKASTGSGKT 235
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFGIPIL + KL + T++D +KT AL
Sbjct: 236 LAFGIPILEYYLEKLRSKTQKDS---------------------------EKTETTPIAL 268
Query: 264 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
+L+PTRELA Q+ HI + + P ++A + GG+S +KQ R+L I++ TPGR+
Sbjct: 269 VLSPTRELAHQLAKHIGEVVSHAPGVNARIALLTGGLSLQKQQRVLTNA-DIVIGTPGRV 327
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQPRQTMI 377
WE + GH + ++ I +LVIDE DR++ GHF E I LDRV
Sbjct: 328 WEVLSSGHGLIRKMQAIKFLVIDEADRLLSEGHFKEAHEILAALDRVV------------ 375
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
G FP+ + + S RQT VFSAT L+ L KG+ + S+
Sbjct: 376 -DGEFPDESSDESDDELDPKS-GRQTLVFSATFHRDLQQKL-AGKGKWTGGDIMSQKESM 432
Query: 438 KRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
+ L LN + P+ +D+ + + L E + C EKD +LY +L HP
Sbjct: 433 EYLLQKLNFREEKPRFIDVNPVSQMAENLKEGIVECAAMEKDLFLYTLLLYHP------- 485
Query: 496 IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555
KH RTLVF NSIS
Sbjct: 486 --------------------------------KH----------------RTLVFTNSIS 497
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPG 612
+V+RLTQLL L+ L LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI G
Sbjct: 498 AVRRLTQLLQTLQLPALALHSSMAQKARLRSVERFSSPSSDPSSILVATDVAARGLDIKG 557
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
I+ V+HYH PRT++ Y+HRSGRTARA G +V++ DE+
Sbjct: 558 IDFVVHYHAPRTADAYVHRSGRTARAGASGKSVIICSPDEM 598
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 1223 KSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------ 1276
K I+++ D ++HRSGRTARA G ++++ DE+ +++ +
Sbjct: 556 KGIDFVVHYHAPRTADAYVHRSGRTARAGASGKSVIICSPDEMVGVVRLAAKVHANMANR 615
Query: 1277 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWLEKAAKDMDIIIDD 1333
KKV L +D V+S +K+R+ LA I ++S I K + DNWL AA+D+ + D
Sbjct: 616 KKVPLESLELDRRVVSRVKQRVTLAARI--VDSNIAKEKVSSEDNWLRTAAEDLGVDYDS 673
Query: 1334 ENL 1336
E
Sbjct: 674 EEF 676
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+L+PTRELA Q+ HI + + P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 267 ALVLSPTRELAHQLAKHIGEVVSHAPGVNARIALLTGGLSLQKQQRVLTNA-DIVIGTPG 325
>gi|350286853|gb|EGZ68100.1| DEAD-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 777
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 192/520 (36%), Positives = 286/520 (55%), Gaps = 75/520 (14%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+ M+EWV ++ +I ++ + F PT IQS +P ++A D++G A TGSGKTLAFG
Sbjct: 203 IDMSEWVPLDLSPRMISSIAKLRFSKPTVIQSKAIPE-IMAGHDVIGKASTGSGKTLAFG 261
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IP++ ++ +A T + K+ R ALIL+P
Sbjct: 262 IPVIESWLS-----------------------------AAETRKQNKEERKGATALILSP 292
Query: 885 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942
TRELA Q+++H+ L G T + V+GGM+ +KQ R L + I++ATPGR+WE +
Sbjct: 293 TRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQL-QVADIVIATPGRMWEVMS 351
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETS------QPRQTF 993
+ L L I++LV+DE DR+++ GHF E + I LDR E RQT
Sbjct: 352 SDNSVLASLRNISFLVLDEADRLLKDGHFKEAEEIFKALDRPPEEEEEEEEEHVNKRQTL 411
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK-SPKIVDLTEKIGITKT 1052
+FSAT +L+ L G+SK K S D ++ L LN + +PK VD + +
Sbjct: 412 IFSATFNKNLQQKL---AGKSKFKATSTQD--MEYLLQKLNFRETPKFVDANPVHQMAEN 466
Query: 1053 LTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
L E I+C EKD YLY ++ P R LVF NS++SV+RLT LL L PLH+ M
Sbjct: 467 LKEGLIMCGDMEKDLYLYATLMLQPTRRALVFTNSVNSVRRLTPLLENLNLPAFPLHSGM 526
Query: 1112 NQRQRLKNLDRF--------RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
Q+ RL+++DRF ++ + +IL+ATDVAARGLDIP ++ VIHYHVPR +E Y+H
Sbjct: 527 IQQARLRSIDRFKANEGAKKKNGSAAILVATDVAARGLDIPDVDLVIHYHVPRAAEDYVH 586
Query: 1164 RSGRTARANNEGLTLVLIESDE-IP---LYIKMFNSLEKKV-------------DLPDFP 1206
RSGRTARA+N G +++L E +P L K+ E K L
Sbjct: 587 RSGRTARASNSGTSILLCGPKEAVPTQRLVAKVHAQAEVKAGNSGNNTKKLVSSGLRTID 646
Query: 1207 IDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRSG 1245
ID +++ +++R+DLAK I + +++K + D+W+ ++
Sbjct: 647 IDRRIVAKLRERVDLAKKIADAVQAKTMGGKEDDWMKKAA 686
Score = 153 bits (386), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 214/466 (45%), Gaps = 101/466 (21%)
Query: 44 QEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVN 103
QE E +E + E A S+ K+ K ++ + + + +Q N
Sbjct: 110 QEVETSESKAEAA--------------STPAKEKKASKDQKKPKEQQKQQKQQPKKEQPN 155
Query: 104 KTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMF-------------VQM 150
K ++ E +KK +K T+A + E++T D+F + M
Sbjct: 156 KAANKKNAE------DKKKARKNEKTTAEPKDPELET----DLFTKLEELPEPEEEEIDM 205
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+EWV ++ +I ++ + F PT IQS +P ++A D++G A TGSGKTLAFGIP+
Sbjct: 206 SEWVPLDLSPRMISSIAKLRFSKPTVIQSKAIPE-IMAGHDVIGKASTGSGKTLAFGIPV 264
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
+ ++ +A T + K+ R ALIL+PTRE
Sbjct: 265 IESWLS-----------------------------AAETRKQNKEERKGATALILSPTRE 295
Query: 271 LAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
LA Q+++H+ L G T + V+GGM+ +KQ R L + I++ATPGR+WE + +
Sbjct: 296 LAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQL-QVADIVIATPGRMWEVMSSDN 354
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQPRQTMIESGHFPEL 385
L L I++LV+DE DR+++ GHF E + I LDR E + + +
Sbjct: 355 SVLASLRNISFLVLDEADRLLKDGHFKEAEEIFKALDRPPEEEEEEEEEHV--------- 405
Query: 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 445
RQT +FSAT +L+ L G+SK K S D ++ L LN
Sbjct: 406 -------------NKRQTLIFSATFNKNLQQKL---AGKSKFKATSTQD--MEYLLQKLN 447
Query: 446 IK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
+ +PK VD + + L E I+C EKD YLY ++ P R
Sbjct: 448 FRETPKFVDANPVHQMAENLKEGLIMCGDMEKDLYLYATLMLQPTR 493
Score = 153 bits (386), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 10/158 (6%)
Query: 500 LNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSV 557
LN + +PK VD + + L E I+C EKD YLY ++ P R LVF NS++SV
Sbjct: 446 LNFRETPKFVDANPVHQMAENLKEGLIMCGDMEKDLYLYATLMLQPTRRALVFTNSVNSV 505
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR--------DQNNSILLATDVAARGLD 609
+RLT LL L PLH+ M Q+ RL+++DRF+ + + +IL+ATDVAARGLD
Sbjct: 506 RRLTPLLENLNLPAFPLHSGMIQQARLRSIDRFKANEGAKKKNGSAAILVATDVAARGLD 565
Query: 610 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
IP ++ VIHYHVPR +E Y+HRSGRTARA+N G +++L
Sbjct: 566 IPDVDLVIHYHVPRAAEDYVHRSGRTARASNSGTSILL 603
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 1351 RYSWDALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 1408
R ALIL+PTRELA Q+++H+ L G T + V+GGM+ +KQ R L + I++
Sbjct: 282 RKGATALILSPTRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQL-QVADIVI 340
Query: 1409 ATPGAL 1414
ATPG +
Sbjct: 341 ATPGRM 346
>gi|317142764|ref|XP_001819080.2| ATP-dependent RNA helicase mak5 [Aspergillus oryzae RIB40]
gi|391863775|gb|EIT73074.1| RNA helicase [Aspergillus oryzae 3.042]
Length = 769
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 196/523 (37%), Positives = 280/523 (53%), Gaps = 71/523 (13%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
ED ++ W + I+ + + F TPT +Q +P L R D++G A TGSGKT
Sbjct: 189 EDDGADVSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGR-DVIGKASTGSGKT 247
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFGIPIL + KL + T++D +KT AL
Sbjct: 248 LAFGIPILEYYLEKLRSKTQKDS---------------------------EKTETTPIAL 280
Query: 881 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
+L+PTRELA Q+ HI + + P ++A + GG+S +KQ R+L I++ TPGR+
Sbjct: 281 VLSPTRELAHQLAKHIGEVVSHAPGVNARIALLTGGLSLQKQQRVLTNA-DIVIGTPGRV 339
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---DRVTMTE--------- 985
WE + GH + ++ I +LVIDE DR++ GHF E IL DRV E
Sbjct: 340 WEVLSSGHGLIRKMQAIKFLVIDEADRLLSEGHFKEAHEILAALDRVVDGEFPDESSDES 399
Query: 986 -----TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--P 1038
RQT VFSAT L+ L KG+ + S++ L LN + P
Sbjct: 400 DDELDPKSGRQTLVFSATFHRDLQQKL-AGKGKWTGGDIMSQKESMEYLLQKLNFREEKP 458
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLL 1097
+ +D+ + + L E + C EKD +LY +L HP RTLVF NSIS+V+RLTQLL
Sbjct: 459 RFIDVNPVSQMAENLKEGIVECAAMEKDLFLYTLLLYHPKHRTLVFTNSISAVRRLTQLL 518
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGIEHVIHYHV 1154
L+ L LH+SM Q+ RL++++RF ++ IL+ATDVAARGLDI GI+ V+HYH
Sbjct: 519 QTLQLPALALHSSMAQKARLRSVERFSSPSSDPSSILVATDVAARGLDIKGIDFVVHYHA 578
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPID 1208
PRT++ Y+HRSGRTARA G ++++ DE+ +++ + KKV L +D
Sbjct: 579 PRTADAYVHRSGRTARAGASGKSVIICSPDEMVGVVRLAAKVHANMANRKKVPLESLELD 638
Query: 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWLHRSGRTA 1248
V+S +K+R+ LA I ++S I K + DNWL RTA
Sbjct: 639 RRVVSRVKQRVTLAARI--VDSNIAKEKVSSEDNWL----RTA 675
Score = 266 bits (681), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 181/521 (34%), Positives = 254/521 (48%), Gaps = 110/521 (21%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
ED ++ W + I+ + + F TPT +Q +P L R D++G A TGSGKT
Sbjct: 189 EDDGADVSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGR-DVIGKASTGSGKT 247
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFGIPIL + KL + T++D +KT AL
Sbjct: 248 LAFGIPILEYYLEKLRSKTQKDS---------------------------EKTETTPIAL 280
Query: 264 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
+L+PTRELA Q+ HI + + P ++A + GG+S +KQ R+L I++ TPGR+
Sbjct: 281 VLSPTRELAHQLAKHIGEVVSHAPGVNARIALLTGGLSLQKQQRVLTNA-DIVIGTPGRV 339
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQPRQTMI 377
WE + GH + ++ I +LVIDE DR++ GHF E I LDRV
Sbjct: 340 WEVLSSGHGLIRKMQAIKFLVIDEADRLLSEGHFKEAHEILAALDRVV------------ 387
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
G FP+ + + S RQT VFSAT L+ L KG+ + S+
Sbjct: 388 -DGEFPDESSDESDDELDPKS-GRQTLVFSATFHRDLQQKL-AGKGKWTGGDIMSQKESM 444
Query: 438 KRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
+ L LN + P+ +D+ + + L E + C EKD +LY +L HP
Sbjct: 445 EYLLQKLNFREEKPRFIDVNPVSQMAENLKEGIVECAAMEKDLFLYTLLLYHP------- 497
Query: 496 IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555
KH RTLVF NSIS
Sbjct: 498 --------------------------------KH----------------RTLVFTNSIS 509
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPG 612
+V+RLTQLL L+ L LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI G
Sbjct: 510 AVRRLTQLLQTLQLPALALHSSMAQKARLRSVERFSSPSSDPSSILVATDVAARGLDIKG 569
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
I+ V+HYH PRT++ Y+HRSGRTARA G +V++ DE+
Sbjct: 570 IDFVVHYHAPRTADAYVHRSGRTARAGASGKSVIICSPDEM 610
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 1223 KSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------ 1276
K I+++ D ++HRSGRTARA G ++++ DE+ +++ +
Sbjct: 568 KGIDFVVHYHAPRTADAYVHRSGRTARAGASGKSVIICSPDEMVGVVRLAAKVHANMANR 627
Query: 1277 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWLEKAAKDMDIIIDD 1333
KKV L +D V+S +K+R+ LA I ++S I K + DNWL AA+D+ + D
Sbjct: 628 KKVPLESLELDRRVVSRVKQRVTLAARI--VDSNIAKEKVSSEDNWLRTAAEDLGVDYDS 685
Query: 1334 ENL 1336
E
Sbjct: 686 EEF 688
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+L+PTRELA Q+ HI + + P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 279 ALVLSPTRELAHQLAKHIGEVVSHAPGVNARIALLTGGLSLQKQQRVLTNA-DIVIGTPG 337
>gi|238501664|ref|XP_002382066.1| ATP dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
gi|220692303|gb|EED48650.1| ATP dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
Length = 769
Score = 301 bits (772), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 196/523 (37%), Positives = 280/523 (53%), Gaps = 71/523 (13%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
ED ++ W + I+ + + F TPT +Q +P L R D++G A TGSGKT
Sbjct: 189 EDDGADVSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGR-DVIGKASTGSGKT 247
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFGIPIL + KL + T++D +KT AL
Sbjct: 248 LAFGIPILEYYLEKLRSKTQKDS---------------------------EKTETTPIAL 280
Query: 881 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
+L+PTRELA Q+ HI + + P ++A + GG+S +KQ R+L I++ TPGR+
Sbjct: 281 VLSPTRELAHQLAKHIGEVVSHAPGVNARIALLTGGLSLQKQQRVLTNA-DIVIGTPGRV 339
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---DRVTMTE--------- 985
WE + GH + ++ I +LVIDE DR++ GHF E IL DRV E
Sbjct: 340 WEVLSSGHGLIRKMQAIKFLVIDEADRLLSEGHFKEAHEILAALDRVVDGEFPDESSDES 399
Query: 986 -----TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--P 1038
RQT VFSAT L+ L KG+ + S++ L LN + P
Sbjct: 400 DDELDPKSGRQTLVFSATFHRDLQQKL-AGKGKWTGGDIMSQKESMEYLLQKLNFREEKP 458
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLL 1097
+ +D+ + + L E + C EKD +LY +L HP RTLVF NSIS+V+RLTQLL
Sbjct: 459 RFIDVNPVSQMAENLKEGIVECAAMEKDLFLYTLLLYHPKHRTLVFTNSISAVRRLTQLL 518
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGIEHVIHYHV 1154
L+ L LH+SM Q+ RL++++RF ++ IL+ATDVAARGLDI GI+ V+HYH
Sbjct: 519 QTLQLPALALHSSMAQKARLRSVERFSSPSSDPSSILVATDVAARGLDIKGIDFVVHYHA 578
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPID 1208
PRT++ Y+HRSGRTARA G ++++ DE+ +++ + KKV L +D
Sbjct: 579 PRTADAYVHRSGRTARAGASGKSVIICSPDEMVGVVRLAAKVHANMANRKKVPLESLELD 638
Query: 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWLHRSGRTA 1248
V+S +K+R+ LA I ++S I K + DNWL RTA
Sbjct: 639 RRVVSRVKQRVTLAARI--VDSNIAKEKVSSEDNWL----RTA 675
Score = 266 bits (681), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 181/521 (34%), Positives = 254/521 (48%), Gaps = 110/521 (21%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
ED ++ W + I+ + + F TPT +Q +P L R D++G A TGSGKT
Sbjct: 189 EDDGADVSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGR-DVIGKASTGSGKT 247
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFGIPIL + KL + T++D +KT AL
Sbjct: 248 LAFGIPILEYYLEKLRSKTQKDS---------------------------EKTETTPIAL 280
Query: 264 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
+L+PTRELA Q+ HI + + P ++A + GG+S +KQ R+L I++ TPGR+
Sbjct: 281 VLSPTRELAHQLAKHIGEVVSHAPGVNARIALLTGGLSLQKQQRVLTNA-DIVIGTPGRV 339
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQPRQTMI 377
WE + GH + ++ I +LVIDE DR++ GHF E I LDRV
Sbjct: 340 WEVLSSGHGLIRKMQAIKFLVIDEADRLLSEGHFKEAHEILAALDRVV------------ 387
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
G FP+ + + S RQT VFSAT L+ L KG+ + S+
Sbjct: 388 -DGEFPDESSDESDDELDPKS-GRQTLVFSATFHRDLQQKL-AGKGKWTGGDIMSQKESM 444
Query: 438 KRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
+ L LN + P+ +D+ + + L E + C EKD +LY +L HP
Sbjct: 445 EYLLQKLNFREEKPRFIDVNPVSQMAENLKEGIVECAAMEKDLFLYTLLLYHP------- 497
Query: 496 IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555
KH RTLVF NSIS
Sbjct: 498 --------------------------------KH----------------RTLVFTNSIS 509
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPG 612
+V+RLTQLL L+ L LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI G
Sbjct: 510 AVRRLTQLLQTLQLPALALHSSMAQKARLRSVERFSSPSSDPSSILVATDVAARGLDIKG 569
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
I+ V+HYH PRT++ Y+HRSGRTARA G +V++ DE+
Sbjct: 570 IDFVVHYHAPRTADAYVHRSGRTARAGASGKSVIICSPDEM 610
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 1223 KSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------ 1276
K I+++ D ++HRSGRTARA G ++++ DE+ +++ +
Sbjct: 568 KGIDFVVHYHAPRTADAYVHRSGRTARAGASGKSVIICSPDEMVGVVRLAAKVHANMANR 627
Query: 1277 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWLEKAAKDMDIIIDD 1333
KKV L +D V+S +K+R+ LA I ++S I K + DNWL AA+D+ + D
Sbjct: 628 KKVPLESLELDRRVVSRVKQRVTLAARI--VDSNIAKEKVSSEDNWLRTAAEDLGVDYDS 685
Query: 1334 ENL 1336
E
Sbjct: 686 EEF 688
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+L+PTRELA Q+ HI + + P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 279 ALVLSPTRELAHQLAKHIGEVVSHAPGVNARIALLTGGLSLQKQQRVLTNA-DIVIGTPG 337
>gi|331215191|ref|XP_003320276.1| hypothetical protein PGTG_01188 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309299266|gb|EFP75857.1| hypothetical protein PGTG_01188 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 874
Score = 301 bits (770), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 196/566 (34%), Positives = 291/566 (51%), Gaps = 119/566 (21%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR---KDIVGAAETGSGKTLAF 823
+ W+ + I RALY F PT +Q +P +L + +D+V AETGSGKTLA+
Sbjct: 233 LPAWLDLKLASPIKRALYNLSFTKPTAVQEASLPISLSSSDSPRDLVVIAETGSGKTLAY 292
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
+PIL ++ L P S + + + ++L + L+L
Sbjct: 293 ALPILNALI--LSPP-------SPMLKSSPQILP-------------------IVTLVLT 324
Query: 884 PTRELAIQVQNHI-----------------------LDAGKYTPVKVACVVGGMSTEKQL 920
PTREL +QV+ HI + T + + GG++ KQ
Sbjct: 325 PTRELCLQVKAHIDTFLKAMCSETQSSQEEGATNEPSSSKNRTGITTVSICGGIAIAKQR 384
Query: 921 RILNK-------------CPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMI 966
+ L + C I++ATPGRLW+ IQ F K+++L+IDE D+MI
Sbjct: 385 KQLERSKKLMEPGKGGLGC--IVIATPGRLWDMIQSWDEFAEGIKRKLDWLIIDEADKMI 442
Query: 967 ESGHFPELKNILDRVTMTETSQPR------------------------------------ 990
E GHF EL+ IL + +PR
Sbjct: 443 EKGHFEELEKILKLTKRPKDRRPRHTTDNNNADEDDGEEEEWEDEWTSQANDADNYIKEK 502
Query: 991 -QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD--PSIKRLQDLL-----NIKSPKIVD 1042
+T VFSAT+ +L+ +NLKK K K + G P + DLL P+++D
Sbjct: 503 IRTMVFSATMDKNLQ--INLKKRSFKGKPPAVGGSIPPADPMHDLLEQIDFRDPHPELID 560
Query: 1043 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML-- 1100
LT + + L E KI C +KD YL +F+L++ GRT+VF +SIS+++RL+ +L +L
Sbjct: 561 LTPQGRMVGGLKECKIECVLKDKDLYLLHFMLRYTGRTIVFLSSISALRRLSPMLNLLLP 620
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
+ L LH+ M QR RLK+LDRFR +NSILL+TDVAARGLDIP ++HVIHY VPR+S+
Sbjct: 621 DSTVLTLHSEMQQRSRLKSLDRFRSSSNSILLSTDVAARGLDIPQVDHVIHYQVPRSSDC 680
Query: 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1220
Y+HRSGRTARA G+ L LI DE+ + + +L + DLP PI+ S+ + +K+ ++
Sbjct: 681 YVHRSGRTARAGKGGVALALIAPDELKTWRSLMKNLGRADDLPSPPIEHSISNKLKELLE 740
Query: 1221 LAKSIEYLESK-IKKNRPDNWLHRSG 1245
LAK I+ LE K K++ +NW+ ++
Sbjct: 741 LAKKIDTLEHKSTKQSHDENWMKKTA 766
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 186/558 (33%), Positives = 271/558 (48%), Gaps = 138/558 (24%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR---KDIVGAAETGSGKTLAF 206
+ W+ + I RALY F PT +Q +P +L + +D+V AETGSGKTLA+
Sbjct: 233 LPAWLDLKLASPIKRALYNLSFTKPTAVQEASLPISLSSSDSPRDLVVIAETGSGKTLAY 292
Query: 207 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
+PIL ++ L P S + + + ++L + L+L
Sbjct: 293 ALPILNALI--LSPP-------SPMLKSSPQILP-------------------IVTLVLT 324
Query: 267 PTRELAIQVQNHI-----------------------LDAGKYTPVKVACVVGGMSTEKQL 303
PTREL +QV+ HI + T + + GG++ KQ
Sbjct: 325 PTRELCLQVKAHIDTFLKAMCSETQSSQEEGATNEPSSSKNRTGITTVSICGGIAIAKQR 384
Query: 304 RILNK-------------CPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMI 349
+ L + C I++ATPGRLW+ IQ F K+++L+IDE D+MI
Sbjct: 385 KQLERSKKLMEPGKGGLGC--IVIATPGRLWDMIQSWDEFAEGIKRKLDWLIIDEADKMI 442
Query: 350 ESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPR-------- 401
E GHF EL+ IL + +PR T ++ + E + TSQ
Sbjct: 443 EKGHFEELEKILKLTKRPKDRRPRHT-TDNNNADEDDGEEEEWEDEWTSQANDADNYIKE 501
Query: 402 --QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD--PSIKRLQDLLNIKSPKIVDLTEK 457
+T VFSAT+ +L+ +NLKK K K + G P + DLL E+
Sbjct: 502 KIRTMVFSATMDKNLQ--INLKKRSFKGKPPAVGGSIPPADPMHDLL-----------EQ 548
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
I D +D + P+++DLT + +
Sbjct: 549 I---------------DFRDPH-------------------------PELIDLTPQGRMV 568
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML--KCSPLPLH 575
L E KI C +KD YL +F+L++ GRT+VF +SIS+++RL+ +L +L + L LH
Sbjct: 569 GGLKECKIECVLKDKDLYLLHFMLRYTGRTIVFLSSISALRRLSPMLNLLLPDSTVLTLH 628
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
+ M QR RLK+LDRFR +NSILL+TDVAARGLDIP ++HVIHY VPR+S+ Y+HRSGRT
Sbjct: 629 SEMQQRSRLKSLDRFRSSSNSILLSTDVAARGLDIPQVDHVIHYQVPRSSDCYVHRSGRT 688
Query: 636 ARANNEGLTVVLIESDEI 653
ARA G+ + LI DE+
Sbjct: 689 ARAGKGGVALALIAPDEL 706
Score = 73.6 bits (179), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA G+ L LI DE+ + + +L + DLP PI+ S+ + +K+
Sbjct: 679 DCYVHRSGRTARAGKGGVALALIAPDELKTWRSLMKNLGRADDLPSPPIEHSISNKLKEL 738
Query: 1298 IDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDEN 1335
++LAK I+ LE K K++ +NW++K A+ ++I +D N
Sbjct: 739 LELAKKIDTLEHKSTKQSHDENWMKKTAEMLEIDLDHSN 777
>gi|366996959|ref|XP_003678242.1| hypothetical protein NCAS_0I02320 [Naumovozyma castellii CBS 4309]
gi|342304113|emb|CCC71900.1| hypothetical protein NCAS_0I02320 [Naumovozyma castellii CBS 4309]
Length = 731
Score = 299 bits (766), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 196/547 (35%), Positives = 300/547 (54%), Gaps = 87/547 (15%)
Query: 746 TSANKELLEVDTSNN----EDMF-VQMAEWVKF-NIPETIIRALYQKGFKTPTKIQSMVM 799
ANK++LE + N+ ED+ V + +W K TI++ L GF PT+IQ+ +
Sbjct: 124 AGANKDVLETNFFNSNLDLEDVASVDLPDWTKLATFSTTIMQGLQSLGFTKPTEIQAKAI 183
Query: 800 PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 859
P AL +DI+G A TGSGKTLA+GIPIL ++ N +
Sbjct: 184 PFAL-KNEDIMGKASTGSGKTLAYGIPILENLIKTFGNDS-------------------- 222
Query: 860 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY----TPVKVACVVGGMS 915
NK ALI PTRELA QV H+ + K + + + GG+S
Sbjct: 223 ---------------NKPIALIFTPTRELAQQVTKHLQNISKLFLKNSQYSILSLTGGLS 267
Query: 916 TEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPE 973
+KQ R+L + I++ATPGR E ++ + + +I+ LV+DE DR+++ GHF E
Sbjct: 268 IQKQERLLKYDNSGKIVIATPGRFLELLEKNNELVERFAQIDTLVLDEADRLLQDGHFDE 327
Query: 974 LKNIL-----DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK- 1027
+ IL R M + QT ++SAT + L + L +S +KKV + D ++
Sbjct: 328 FEKILKYLGQKRKEMKLKNTYWQTMIYSATFSIDLFDKLANSSWKS-NKKVKQYDSEMET 386
Query: 1028 ---RLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 1083
L + ++ KS P ++D+ I+ + ES I C E+D Y YYFI PG TL+F
Sbjct: 387 VLHHLMNKIHFKSKPILIDMNPNQKISSQIKESLIECAPTERDLYCYYFITMFPGTTLIF 446
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ---NNS-----ILLATD 1135
CN+I SVK+L+ +L +L S L +H+SM Q+ RL+NL+++ +Q NN+ +L+A+D
Sbjct: 447 CNAIESVKKLSVMLNILGVSCLQIHSSMTQKNRLRNLEKYEEQSVKNNALGKATVLIASD 506
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PLYIKMF 1193
VAARGLDIP I+HVIHYH+PR++++YIHRSGRTARANNEG+++++ E PL K+
Sbjct: 507 VAARGLDIPNIKHVIHYHLPRSADVYIHRSGRTARANNEGVSVMVCSPQESMGPLR-KLR 565
Query: 1194 NSLEKKVD------------LPDFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPD 1238
L K + +P PI+ ++S +++R LA + E S ++K+ D
Sbjct: 566 KILANKAEANPSKNKKWQKTVPLLPIETDIVSQLRERTRLASELADHEMASSSLRKD--D 623
Query: 1239 NWLHRSG 1245
NW+ ++
Sbjct: 624 NWMKQAA 630
Score = 273 bits (697), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 181/545 (33%), Positives = 275/545 (50%), Gaps = 133/545 (24%)
Query: 129 TSANKELLEVDTSNN----EDMF-VQMAEWVKF-NIPETIIRALYQKGFKTPTKIQSMVM 182
ANK++LE + N+ ED+ V + +W K TI++ L GF PT+IQ+ +
Sbjct: 124 AGANKDVLETNFFNSNLDLEDVASVDLPDWTKLATFSTTIMQGLQSLGFTKPTEIQAKAI 183
Query: 183 PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 242
P AL +DI+G A TGSGKTLA+GIPIL ++ N +
Sbjct: 184 PFAL-KNEDIMGKASTGSGKTLAYGIPILENLIKTFGNDS-------------------- 222
Query: 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY----TPVKVACVVGGMS 298
NK ALI PTRELA QV H+ + K + + + GG+S
Sbjct: 223 ---------------NKPIALIFTPTRELAQQVTKHLQNISKLFLKNSQYSILSLTGGLS 267
Query: 299 TEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPE 356
+KQ R+L + I++ATPGR E ++ + + +I+ LV+DE DR+++ GHF E
Sbjct: 268 IQKQERLLKYDNSGKIVIATPGRFLELLEKNNELVERFAQIDTLVLDEADRLLQDGHFDE 327
Query: 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416
+ IL + Q R+ M +LKN QT ++SAT +
Sbjct: 328 FEKILKYL-----GQKRKEM-------KLKNTY-----------WQTMIYSATFS----- 359
Query: 417 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 476
+DL +K+ + + K+ E
Sbjct: 360 -----------------------------------IDLFDKLANSSWKSNKKVKQYDSEM 384
Query: 477 DSYLYYFILQHPGRTLCEEIQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSY 535
++ L++ + + ++ KS P ++D+ I+ + ES I C E+D Y
Sbjct: 385 ETVLHHLM-------------NKIHFKSKPILIDMNPNQKISSQIKESLIECAPTERDLY 431
Query: 536 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-- 593
YYFI PG TL+FCN+I SVK+L+ +L +L S L +H+SM Q+ RL+NL+++ +Q
Sbjct: 432 CYYFITMFPGTTLIFCNAIESVKKLSVMLNILGVSCLQIHSSMTQKNRLRNLEKYEEQSV 491
Query: 594 -NNS-----ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
NN+ +L+A+DVAARGLDIP I+HVIHYH+PR++++YIHRSGRTARANNEG++V++
Sbjct: 492 KNNALGKATVLIASDVAARGLDIPNIKHVIHYHLPRSADVYIHRSGRTARANNEGVSVMV 551
Query: 648 IESDE 652
E
Sbjct: 552 CSPQE 556
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 20/107 (18%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLYIKMFNSLEKKVD------------LPD 1283
D ++HRSGRTARANNEG+++++ E PL K+ L K + +P
Sbjct: 530 DVYIHRSGRTARANNEGVSVMVCSPQESMGPLR-KLRKILANKAEANPSKNKKWQKTVPL 588
Query: 1284 FPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLEKAAKDM 1327
PI+ ++S +++R LA + E S ++K+ DNW+++AA D+
Sbjct: 589 LPIETDIVSQLRERTRLASELADHEMASSSLRKD--DNWMKQAADDL 633
Score = 45.8 bits (107), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 22/133 (16%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKY----TPVKVACVVGGMSTEKQLRIL--NKCPHILVA 1409
ALI PTRELA QV H+ + K + + + GG+S +KQ R+L + I++A
Sbjct: 227 ALIFTPTRELAQQVTKHLQNISKLFLKNSQYSILSLTGGLSIQKQERLLKYDNSGKIVIA 286
Query: 1410 TPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENAL 1469
TPG + +E LE + + +E+ A+ +++D+ + + + E
Sbjct: 287 TPG----------RFLELLE------KNNELVERFAQIDTLVLDEADRLLQDGHFDEFEK 330
Query: 1470 MSKALVSKRKELQ 1482
+ K L KRKE++
Sbjct: 331 ILKYLGQKRKEMK 343
>gi|402081834|gb|EJT76979.1| ATP-dependent RNA helicase MAK5 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 760
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 187/498 (37%), Positives = 271/498 (54%), Gaps = 55/498 (11%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M++WV ++ ++ ++ + F PT IQ+ +P +LA D++G A TGSGKTLAFGIP
Sbjct: 193 MSQWVPLDLSGEMLSSIARLKFSKPTAIQAQAIPE-ILAGHDVIGKASTGSGKTLAFGIP 251
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
I+ ++ L + +A+ + K K AL+L+PTR
Sbjct: 252 IVERWIS-------------------------LSQTAASKSPEEGK---KPIALVLSPTR 283
Query: 887 ELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
ELA Q+ NH L G T + V GG+S KQ R L K I++ATPGRLWE +
Sbjct: 284 ELAHQITNHFKALCGGLATAPYICSVTGGLSVHKQQRQLEKA-DIVIATPGRLWEVLSSS 342
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQ-----PRQTFVFS 996
+ I YLV+DE DR++ GHF + + I LDR+ TE PRQT VFS
Sbjct: 343 KQTVAAFRHIKYLVVDEADRLLSDGHFKDAEEIMRALDRIETTEDRDNQGPPPRQTLVFS 402
Query: 997 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
AT L+ L K + + +KRL+ + PK +D+ + L E
Sbjct: 403 ATFNKGLQQKLAGKGRFDLNNDALSMEYLLKRLK--FREEKPKFIDVNPVSQMAARLKEG 460
Query: 1057 KILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
+ C EKD YLY +L HP + TLVF NSISSV+RLT +L L L LH+ M Q+
Sbjct: 461 LVECDAMEKDLYLYSLLLMHPTQHTLVFTNSISSVRRLTPMLQNLTLPALALHSQMPQKA 520
Query: 1116 RLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
RL++++RF + +SIL+ATDVAARGLDI GI+ VIHYHVPR ++ Y+HRSGRTARA
Sbjct: 521 RLRSVERFTAAKPGTSSILIATDVAARGLDIKGIDVVIHYHVPRAADAYVHRSGRTARAE 580
Query: 1173 NEGLTLVLIESDEIP--------LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
N GL++++ DE+ ++ N ++ V L +D ++ +K+R+ +AK
Sbjct: 581 NTGLSVLICAPDEVTPTRRLVAKVHATGRNRKQQSVFLQSIDLDRRLVGKLKERVSIAKQ 640
Query: 1225 I-EYLESKIKKNRPDNWL 1241
I + +K K + D+W+
Sbjct: 641 IADSTLAKEKVGKEDDWM 658
Score = 265 bits (677), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 175/509 (34%), Positives = 245/509 (48%), Gaps = 112/509 (22%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M++WV ++ ++ ++ + F PT IQ+ +P +LA D++G A TGSGKTLAFGIP
Sbjct: 193 MSQWVPLDLSGEMLSSIARLKFSKPTAIQAQAIPE-ILAGHDVIGKASTGSGKTLAFGIP 251
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
I+ ++ L + +A+ + K K AL+L+PTR
Sbjct: 252 IVERWIS-------------------------LSQTAASKSPEEGK---KPIALVLSPTR 283
Query: 270 ELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
ELA Q+ NH L G T + V GG+S KQ R L K I++ATPGRLWE +
Sbjct: 284 ELAHQITNHFKALCGGLATAPYICSVTGGLSVHKQQRQLEKA-DIVIATPGRLWEVLSSS 342
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
+ I YLV+DE DR++ GHF + + I+ + ET++ R
Sbjct: 343 KQTVAAFRHIKYLVVDEADRLLSDGHFKDAEEIMRALDRIETTEDRD------------- 389
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
+ PRQT VFSAT L+ L K + + +KRL+ +
Sbjct: 390 -------NQGPPPRQTLVFSATFNKGLQQKLAGKGRFDLNNDALSMEYLLKRLK--FREE 440
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
PK +D+ + L E + C EKD YLY +L HP
Sbjct: 441 KPKFIDVNPVSQMAARLKEGLVECDAMEKDLYLYSLLLMHP------------------- 481
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
QH TLVF NSISSV+RLT +L L
Sbjct: 482 ---------------------------------TQH---TLVFTNSISSVRRLTPMLQNL 505
Query: 568 KCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L LH+ M Q+ RL++++RF + +SIL+ATDVAARGLDI GI+ VIHYHVPR
Sbjct: 506 TLPALALHSQMPQKARLRSVERFTAAKPGTSSILIATDVAARGLDIKGIDVVIHYHVPRA 565
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
++ Y+HRSGRTARA N GL+V++ DE+
Sbjct: 566 ADAYVHRSGRTARAENTGLSVLICAPDEV 594
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 9/108 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIP--------LYIKMFNSLEKKVDLPDFPIDES 1289
D ++HRSGRTARA N GL++++ DE+ ++ N ++ V L +D
Sbjct: 567 DAYVHRSGRTARAENTGLSVLICAPDEVTPTRRLVAKVHATGRNRKQQSVFLQSIDLDRR 626
Query: 1290 VLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
++ +K+R+ +AK I + +K K + D+W+ AA+++ + D E L
Sbjct: 627 LVGKLKERVSIAKQIADSTLAKEKVGKEDDWMRTAAEELGVEYDSEEL 674
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
AL+L+PTRELA Q+ NH L G T + V GG+S KQ R L K I++ATPG
Sbjct: 276 ALVLSPTRELAHQITNHFKALCGGLATAPYICSVTGGLSVHKQQRQLEKA-DIVIATPGR 334
Query: 1414 L 1414
L
Sbjct: 335 L 335
>gi|451851184|gb|EMD64485.1| hypothetical protein COCSADRAFT_37068 [Cochliobolus sativus ND90Pr]
Length = 823
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 184/520 (35%), Positives = 282/520 (54%), Gaps = 70/520 (13%)
Query: 755 VDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 814
+D S+ ED+ + W K ++ E ++ AL + F PT IQ+ +P ++A +D++G A
Sbjct: 243 MDDSDEEDV----SAWGKLDLSEEMLGALAKLKFSKPTNIQTSTIPE-IIAGRDVIGKAS 297
Query: 815 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTR 874
TGSGKTLAFGIPI+ + P K T+
Sbjct: 298 TGSGKTLAFGIPIIESYLAGRAAP--------------------------------KDTK 325
Query: 875 NKL-YALILAPTRELAIQVQNHILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
+K+ ALI+APTRELA Q+ H++ G + +A + GG+S +KQ R L K I+
Sbjct: 326 DKVPLALIIAPTRELAHQINEHLVKLCAKGDFDSPYIASITGGLSVQKQRRQLEKA-DIV 384
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT----MTET 986
V TPGRLWE I G L + +I +LV+DE DR++ GHF E+ +IL + + E
Sbjct: 385 VGTPGRLWEVISSGQGLLAKFKQIKFLVVDEADRLLSQGHFKEMDDILKVLEPDDEVDEN 444
Query: 987 SQP-------RQTFVFSATLTHSLKNSLNLKK--GQSKSKKVSKGDPSIKRLQDLLNIKS 1037
++P RQT VFSAT L+ L K G + + + +K+L+ +
Sbjct: 445 AEPAETPEANRQTLVFSATFGKDLQRKLAGKAKFGGDQMNQQQSMEYLLKKLR--FREEK 502
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQL 1096
PK +D + L E I C EKD YLY ++ + R LVF NSIS+V+R+T
Sbjct: 503 PKFIDANPTSQMASKLQEGLIECAGPEKDLYLYSLLMFYTKKRALVFTNSISAVRRITPF 562
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
LT L LPLH++M Q+ RL++++RF+++ SIL+ATDVAARGLDIP +E VIHYH+PR
Sbjct: 563 LTNLNLPALPLHSNMPQKARLRSIERFKERPGSILVATDVAARGLDIPKVELVIHYHLPR 622
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-----------LPDF 1205
++ Y+HRSGRTARAN G ++++ +E+ ++ + + +
Sbjct: 623 AADTYVHRSGRTARANASGASILICAPEEVAGVRRLIAKVHARAASAPKTKNTSFFIRTL 682
Query: 1206 PIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
ID ++S +K R ++K + + + +K KKN D+ L ++
Sbjct: 683 DIDRRIVSRLKPRATISKRLADTVIAKEKKNSGDDVLRQA 722
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 71/358 (19%)
Query: 138 VDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 197
+D S+ ED+ + W K ++ E ++ AL + F PT IQ+ +P ++A +D++G A
Sbjct: 243 MDDSDEEDV----SAWGKLDLSEEMLGALAKLKFSKPTNIQTSTIPE-IIAGRDVIGKAS 297
Query: 198 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTR 257
TGSGKTLAFGIPI+ + P K T+
Sbjct: 298 TGSGKTLAFGIPIIESYLAGRAAP--------------------------------KDTK 325
Query: 258 NKL-YALILAPTRELAIQVQNHILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
+K+ ALI+APTRELA Q+ H++ G + +A + GG+S +KQ R L K I+
Sbjct: 326 DKVPLALIIAPTRELAHQINEHLVKLCAKGDFDSPYIASITGGLSVQKQRRQLEKA-DIV 384
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV----TMTET 369
V TPGRLWE I G L + +I +LV+DE DR++ GHF E+ +IL + + E
Sbjct: 385 VGTPGRLWEVISSGQGLLAKFKQIKFLVVDEADRLLSQGHFKEMDDILKVLEPDDEVDEN 444
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK--GQSKS 427
++P +T PE RQT VFSAT L+ L K G +
Sbjct: 445 AEPAET-------PEAN--------------RQTLVFSATFGKDLQRKLAGKAKFGGDQM 483
Query: 428 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 485
+ + +K+L+ + PK +D + L E I C EKD YLY ++
Sbjct: 484 NQQQSMEYLLKKLR--FREEKPKFIDANPTSQMASKLQEGLIECAGPEKDLYLYSLLM 539
Score = 157 bits (398), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQL 563
PK +D + L E I C EKD YLY ++ + R LVF NSIS+V+R+T
Sbjct: 503 PKFIDANPTSQMASKLQEGLIECAGPEKDLYLYSLLMFYTKKRALVFTNSISAVRRITPF 562
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
LT L LPLH++M Q+ RL++++RF+++ SIL+ATDVAARGLDIP +E VIHYH+PR
Sbjct: 563 LTNLNLPALPLHSNMPQKARLRSIERFKERPGSILVATDVAARGLDIPKVELVIHYHLPR 622
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEI 653
++ Y+HRSGRTARAN G ++++ +E+
Sbjct: 623 AADTYVHRSGRTARANASGASILICAPEEV 652
Score = 53.5 bits (127), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 20/147 (13%)
Query: 1356 ALILAPTRELAIQVQNHILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALI+APTRELA Q+ H++ G + +A + GG+S +KQ R L K I+V TPG
Sbjct: 331 ALIIAPTRELAHQINEHLVKLCAKGDFDSPYIASITGGLSVQKQRRQLEKA-DIVVGTPG 389
Query: 1413 ALSLKRIDLAKSIEYLESKIKK------NRPDNWLEKAA-KDMDIIIDDENLIQPKANSR 1465
L ++ S + L +K K+ + D L + K+MD I+ +++P
Sbjct: 390 RL----WEVISSGQGLLAKFKQIKFLVVDEADRLLSQGHFKEMDDIL---KVLEPDDEVD 442
Query: 1466 ENALMSKALVSKRKEL--QSLLGKSVQ 1490
ENA ++ + R+ L + GK +Q
Sbjct: 443 ENAEPAETPEANRQTLVFSATFGKDLQ 469
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-----------LPDFPI 1286
D ++HRSGRTARAN G ++++ +E+ ++ + + + I
Sbjct: 625 DTYVHRSGRTARANASGASILICAPEEVAGVRRLIAKVHARAASAPKTKNTSFFIRTLDI 684
Query: 1287 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
D ++S +K R ++K + + + +K KKN D+ L +AA+D+ + D E
Sbjct: 685 DRRIVSRLKPRATISKRLADTVIAKEKKNSGDDVLRQAAEDLGVDYDSEEF 735
>gi|295658672|ref|XP_002789896.1| ATP-dependent RNA helicase MAK5 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282857|gb|EEH38423.1| ATP-dependent RNA helicase MAK5 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 771
Score = 298 bits (763), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 209/561 (37%), Positives = 294/561 (52%), Gaps = 79/561 (14%)
Query: 727 SDEPHSKK------LKQKKKKKQTYTSANKELLEVDTSNNED--MFVQMAEWVKFNIPET 778
+DEP KK K K KK ++ + + D N ED V ++ W I
Sbjct: 144 ADEPREKKRLKLKEAKGKNNKKHAPSTDVQPGMSFDALNEEDDQEDVDVSAWEPLGISAE 203
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
+ +L + F PT IQS +P + A D+VG A TGSGKTLAFGIPIL LEN
Sbjct: 204 LQTSLAKLKFAKPTPIQSACIPE-IAAGHDVVGKASTGSGKTLAFGIPILE---YHLENN 259
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
+E +G + +R ALIL+PTRELA Q+ H+
Sbjct: 260 RDEPIQSTGSD----------------------SSRKNPIALILSPTRELAHQISKHLTA 297
Query: 899 AGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
P ++A + GG+S +KQ R+L I++ TPGRLW+ I G + + I
Sbjct: 298 FISNAPNINARIALLTGGLSVQKQHRLLANA-DIVIGTPGRLWDVISNGQGLIRKFQSIK 356
Query: 956 YLVIDETDRMIESGHFPELKNIL---DRVTMTE-TSQP---------------RQTFVFS 996
+LV+DE DR++ GHF E++ IL DR + + +P RQT VFS
Sbjct: 357 FLVVDEADRLLSEGHFKEVEEILTSLDRKEINDGVEEPDSDSESERDNTKSFLRQTLVFS 416
Query: 997 ATLTHSLKNSLNLKKGQSKSKKVSKG----DPSIKRLQDLLNIKS--PKIVDLTEKIGIT 1050
AT SL+ L KS+ V G S++ L + LN + PK +D+ +
Sbjct: 417 ATFHRSLQQKL-----AGKSRFVDGGLLDNKQSMEYLLEKLNFREEKPKFIDVNPVSQMA 471
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHA 1109
+ + E + C EKD YLY +L H RTLVF NSIS+V+RLT L L L LH+
Sbjct: 472 ENIREGLVECPAMEKDLYLYTLMLYHLNHRTLVFTNSISAVRRLTSFLQNLNLPALSLHS 531
Query: 1110 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 1169
SM Q+ RL++++RF +SIL+ATDVAARGLDI GI+ +IHYHVPRT++ Y+HRSGRTA
Sbjct: 532 SMAQKARLRSVERF-SSPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRSGRTA 590
Query: 1170 RANNEGLTLVLIESDEI----PLYIKMFNS----LEKKVDLPDFPIDESVLSLIKKRIDL 1221
RA+ G +++L +EI L K+ S K++ LP +D V++ ++ R+ L
Sbjct: 591 RASASGKSILLCAPEEIVGVARLAAKVHTSNLVTSSKRLPLPSVDLDRHVIARVRPRVAL 650
Query: 1222 AKSI-EYLESKIKKNRPDNWL 1241
AK I E+ +K K D+WL
Sbjct: 651 AKKITEHTLAKEKLLSEDDWL 671
Score = 266 bits (679), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 195/561 (34%), Positives = 271/561 (48%), Gaps = 114/561 (20%)
Query: 110 SDEPSSKK------LKQKKKKKQTYTSANKELLEVDTSNNED--MFVQMAEWVKFNIPET 161
+DEP KK K K KK ++ + + D N ED V ++ W I
Sbjct: 144 ADEPREKKRLKLKEAKGKNNKKHAPSTDVQPGMSFDALNEEDDQEDVDVSAWEPLGISAE 203
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
+ +L + F PT IQS +P + A D+VG A TGSGKTLAFGIPIL LEN
Sbjct: 204 LQTSLAKLKFAKPTPIQSACIPE-IAAGHDVVGKASTGSGKTLAFGIPILE---YHLENN 259
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
+E +G + +R ALIL+PTRELA Q+ H+
Sbjct: 260 RDEPIQSTGSD----------------------SSRKNPIALILSPTRELAHQISKHLTA 297
Query: 282 AGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
P ++A + GG+S +KQ R+L I++ TPGRLW+ I G + + I
Sbjct: 298 FISNAPNINARIALLTGGLSVQKQHRLLANA-DIVIGTPGRLWDVISNGQGLIRKFQSIK 356
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS 398
+LV+DE DR++ GHF E++ IL TS R+ + + P+ + +R S
Sbjct: 357 FLVVDEADRLLSEGHFKEVEEIL-------TSLDRKEINDGVEEPDSDSESERDNT--KS 407
Query: 399 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG----DPSIKRLQDLLNIKS--PKIV 452
RQT VFSAT SL+ L KS+ V G S++ L + LN + PK +
Sbjct: 408 FLRQTLVFSATFHRSLQQKL-----AGKSRFVDGGLLDNKQSMEYLLEKLNFREEKPKFI 462
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
D+ + + + E + C EKD YLY +L H
Sbjct: 463 DVNPVSQMAENIREGLVECPAMEKDLYLYTLMLYH------------------------- 497
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
L H RTLVF NSIS+V+RLT L L L
Sbjct: 498 ----------------------------LNH--RTLVFTNSISAVRRLTSFLQNLNLPAL 527
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI GI+ +IHYHVPRT++ Y+HRS
Sbjct: 528 SLHSSMAQKARLRSVERF-SSPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRS 586
Query: 633 GRTARANNEGLTVVLIESDEI 653
GRTARA+ G +++L +EI
Sbjct: 587 GRTARASASGKSILLCAPEEI 607
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI----PLYIKMFNS----LEKKVDLPDFPIDES 1289
D ++HRSGRTARA+ G +++L +EI L K+ S K++ LP +D
Sbjct: 580 DTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHTSNLVTSSKRLPLPSVDLDRH 639
Query: 1290 VLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
V++ ++ R+ LAK I E+ +K K D+WL AA+D+ + D E +
Sbjct: 640 VIARVRPRVALAKKITEHTLAKEKLLSEDDWLRSAAEDLGVDYDSEEFAE 689
Score = 48.5 bits (114), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 278 ALILSPTRELAHQISKHLTAFISNAPNINARIALLTGGLSVQKQHRLLANA-DIVIGTPG 336
Query: 1413 AL 1414
L
Sbjct: 337 RL 338
>gi|407919561|gb|EKG12791.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 735
Score = 298 bits (762), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 187/508 (36%), Positives = 268/508 (52%), Gaps = 68/508 (13%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W N+ + A+ + F PT+IQ +P +L+ D+VG A TGSGKTLAFGIPIL
Sbjct: 199 WNSLNLSNETMVAISKLKFGAPTRIQRAAIPE-ILSGHDVVGKAATGSGKTLAFGIPILE 257
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ ES + KK ALIL+PTRELA
Sbjct: 258 SFL-----------------------------ESQGNKKAPKKGEKAPTALILSPTRELA 288
Query: 890 IQVQNHILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
Q+ H+ D +G + VA + GG+S +KQ R L + ++V TPGRLWE I LGH
Sbjct: 289 HQISKHLTDLYTSGTFESPFVATITGGLSIQKQQRQL-ETADVVVGTPGRLWEVISLGHG 347
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILD-------------------RVTMTETS 987
L + +LV+DE DR++ GHF E++ IL+ R + ++
Sbjct: 348 VLKRFKRTKFLVVDEADRLLSEGHFKEVEEILNVLGSEDEDEDAEDEEENEEREDVQDSP 407
Query: 988 QPRQTFVFSATLTHSLKNSLNLKKGQSK-SKKVSKGDPSIKRLQDLLNIKS--PKIVDLT 1044
RQT VFSAT L+ L G++K + S++ L LN + PK VD+
Sbjct: 408 VQRQTLVFSATFNKGLQQKLT---GKAKWHGDLLSNKESMEYLLKKLNFREERPKFVDVN 464
Query: 1045 EKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCS 1103
+ + L E + C EKD YLY ++ HP RTL+F NS+S+V+RL LT L
Sbjct: 465 PVSQMAEGLKEGLVECGATEKDLYLYALLMFHPKTRTLIFTNSVSAVRRLHPFLTNLNLP 524
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
L LH+ M Q+QRL+N++RF Q +SIL+ATDVAARGLDI G+E VIHYH+PRT+++Y+H
Sbjct: 525 ALALHSHMAQKQRLRNVERFSTQPDSILIATDVAARGLDIKGVELVIHYHLPRTADMYVH 584
Query: 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP-------DFPIDESVLSLIK 1216
RSGRTAR ++ G ++++ +E+ ++ + P +D V++ +K
Sbjct: 585 RSGRTARGDSSGSSVLICAPEEVVGVRRLVAKVHANNAAPKSTYFMRSIDLDRKVVTRLK 644
Query: 1217 KRIDLAKSIEYLE-SKIKKNRPDNWLHR 1243
R LAK I + +K K N +N L R
Sbjct: 645 PRATLAKKIADTDIAKSKSNSSENDLLR 672
Score = 266 bits (681), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 173/507 (34%), Positives = 250/507 (49%), Gaps = 104/507 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W N+ + A+ + F PT+IQ +P +L+ D+VG A TGSGKTLAFGIPIL
Sbjct: 199 WNSLNLSNETMVAISKLKFGAPTRIQRAAIPE-ILSGHDVVGKAATGSGKTLAFGIPILE 257
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ ES + KK ALIL+PTRELA
Sbjct: 258 SFL-----------------------------ESQGNKKAPKKGEKAPTALILSPTRELA 288
Query: 273 IQVQNHILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
Q+ H+ D +G + VA + GG+S +KQ R L + ++V TPGRLWE I LGH
Sbjct: 289 HQISKHLTDLYTSGTFESPFVATITGGLSIQKQQRQL-ETADVVVGTPGRLWEVISLGHG 347
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
L + +LV+DE DR++ GHF E++ IL+ + + + + +
Sbjct: 348 VLKRFKRTKFLVVDEADRLLSEGHFKEVEEILNVLGSEDEDEDAEDE---------EENE 398
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK-SKKVSKGDPSIKRLQDLLNIKS 448
+R + ++ RQT VFSAT L+ L G++K + S++ L LN +
Sbjct: 399 EREDVQDSPVQRQTLVFSATFNKGLQQKLT---GKAKWHGDLLSNKESMEYLLKKLNFRE 455
Query: 449 --PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPK 506
PK VD+ + + L E + C EKD YLY ++ HP
Sbjct: 456 ERPKFVDVNPVSQMAEGLKEGLVECGATEKDLYLYALLMFHPK----------------- 498
Query: 507 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 566
T+TL +F NS+S+V+RL LT
Sbjct: 499 ----------TRTL----------------------------IFTNSVSAVRRLHPFLTN 520
Query: 567 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626
L L LH+ M Q+QRL+N++RF Q +SIL+ATDVAARGLDI G+E VIHYH+PRT++
Sbjct: 521 LNLPALALHSHMAQKQRLRNVERFSTQPDSILIATDVAARGLDIKGVELVIHYHLPRTAD 580
Query: 627 IYIHRSGRTARANNEGLTVVLIESDEI 653
+Y+HRSGRTAR ++ G +V++ +E+
Sbjct: 581 MYVHRSGRTARGDSSGSSVLICAPEEV 607
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ D +G + VA + GG+S +KQ R L + ++V TPG
Sbjct: 278 ALILSPTRELAHQISKHLTDLYTSGTFESPFVATITGGLSIQKQQRQL-ETADVVVGTPG 336
Query: 1413 AL 1414
L
Sbjct: 337 RL 338
Score = 45.4 bits (106), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP-------DFPIDESV 1290
D ++HRSGRTAR ++ G ++++ +E+ ++ + P +D V
Sbjct: 580 DMYVHRSGRTARGDSSGSSVLICAPEEVVGVRRLVAKVHANNAAPKSTYFMRSIDLDRKV 639
Query: 1291 LSLIKKRIDLAKSIEYLE-SKIKKNRPDN-WLEKAAKDMDIIIDDENLIQP 1339
++ +K R LAK I + +K K N +N L +AA+D+ + D E L +P
Sbjct: 640 VTRLKPRATLAKKIADTDIAKSKSNSSENDLLRQAAEDLGVEYDSEELEKP 690
>gi|367013592|ref|XP_003681296.1| hypothetical protein TDEL_0D05010 [Torulaspora delbrueckii]
gi|359748956|emb|CCE92085.1| hypothetical protein TDEL_0D05010 [Torulaspora delbrueckii]
Length = 750
Score = 298 bits (762), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 185/530 (34%), Positives = 286/530 (53%), Gaps = 88/530 (16%)
Query: 761 EDMFV-QMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSG 818
ED+ V + EW K + T ++ L + GF PT IQ+ +P A+ +DI+G A TGSG
Sbjct: 165 EDVDVAEFPEWNKLGKLSVTTLQGLTKLGFSKPTDIQAKAIPEAMKG-EDIMGKAATGSG 223
Query: 819 KTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY 878
KTLA+GIPIL ++N K ++K
Sbjct: 224 KTLAYGIPILEKMLN-------------------------------------NKDQSKAI 246
Query: 879 ALILAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMSTEKQLRIL--NKCPHILVA 932
ALI PTRELA QV H+ G K +P + + GG+S +KQ R+L + ++VA
Sbjct: 247 ALIFTPTRELAQQVTKHLQQIGELILKKSPYAIMSLTGGLSIQKQERLLKYDGSARVVVA 306
Query: 933 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT----MTETSQ 988
TPGR E I+ + KI+ LV+DE DR+++ GHF E + IL + T+ +
Sbjct: 307 TPGRFLELIEKNESLVKRFAKIDTLVLDEADRLLQDGHFDEFEKILKYLGNSRKSTDKKE 366
Query: 989 PRQTFVFSATLTHSLKNSLN------LKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIV 1041
QT +FSAT L N L+ KKG+ + S+ + ++ L ++ KS P I+
Sbjct: 367 GWQTMIFSATFAMDLFNKLSTTSWSKFKKGKENA---SEMEIVLQHLMTKIHFKSKPVII 423
Query: 1042 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 1101
D + ++ + ES I C E+D Y YYF+ +PG TL+FCNSI SVK+LT L LK
Sbjct: 424 DTDSEQRVSSRIKESLIECGPLERDLYCYYFVTMYPGTTLIFCNSIDSVKKLTAYLNNLK 483
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQ--------NNSILLATDVAARGLDIPGIEHVIHYH 1153
+H+SM Q+ RL+NL++++ Q +++L+A+DVAARGLDIP I+HVIHYH
Sbjct: 484 VPSFQIHSSMTQKNRLRNLEKYQQQAKKNSVLDKSTVLIASDVAARGLDIPNIQHVIHYH 543
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL---------------EK 1198
+PRT+++YIHRSGRTARA NEG+++++ E ++ L +
Sbjct: 544 LPRTADVYIHRSGRTARAENEGVSVMICSPGESMGPLRKLRKLLAIKNGESDQQTKKKKW 603
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLHRSG 1245
+ +P PI+ +++ +++R +A + + + + +KK+ DNWL ++
Sbjct: 604 QKTVPLLPIETDIVTQMRERSRIASEVADHDIVSNSLKKD--DNWLKKAA 651
Score = 272 bits (696), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 176/526 (33%), Positives = 256/526 (48%), Gaps = 132/526 (25%)
Query: 144 EDMFV-QMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSG 201
ED+ V + EW K + T ++ L + GF PT IQ+ +P A+ +DI+G A TGSG
Sbjct: 165 EDVDVAEFPEWNKLGKLSVTTLQGLTKLGFSKPTDIQAKAIPEAMKG-EDIMGKAATGSG 223
Query: 202 KTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY 261
KTLA+GIPIL ++N K ++K
Sbjct: 224 KTLAYGIPILEKMLNN-------------------------------------KDQSKAI 246
Query: 262 ALILAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMSTEKQLRIL--NKCPHILVA 315
ALI PTRELA QV H+ G K +P + + GG+S +KQ R+L + ++VA
Sbjct: 247 ALIFTPTRELAQQVTKHLQQIGELILKKSPYAIMSLTGGLSIQKQERLLKYDGSARVVVA 306
Query: 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT 375
TPGR E I+ + KI+ LV+DE DR+++ GHF E + IL + + S
Sbjct: 307 TPGRFLELIEKNESLVKRFAKIDTLVLDEADRLLQDGHFDEFEKILKYLGNSRKS----- 361
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP 435
T+ + QT +FSAT L N L+ + K KG
Sbjct: 362 -------------------TDKKEGWQTMIFSATFAMDLFNKLS----TTSWSKFKKGKE 398
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
+ ++ +LQH
Sbjct: 399 NASEME-----------------------------------------IVLQH-------- 409
Query: 496 IQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554
+ ++ KS P I+D + ++ + ES I C E+D Y YYF+ +PG TL+FCNSI
Sbjct: 410 LMTKIHFKSKPVIIDTDSEQRVSSRIKESLIECGPLERDLYCYYFVTMYPGTTLIFCNSI 469
Query: 555 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ--------NNSILLATDVAAR 606
SVK+LT L LK +H+SM Q+ RL+NL++++ Q +++L+A+DVAAR
Sbjct: 470 DSVKKLTAYLNNLKVPSFQIHSSMTQKNRLRNLEKYQQQAKKNSVLDKSTVLIASDVAAR 529
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
GLDIP I+HVIHYH+PRT+++YIHRSGRTARA NEG++V++ E
Sbjct: 530 GLDIPNIQHVIHYHLPRTADVYIHRSGRTARAENEGVSVMICSPGE 575
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMSTEKQLRIL--NKCPHILVA 1409
ALI PTRELA QV H+ G K +P + + GG+S +KQ R+L + ++VA
Sbjct: 247 ALIFTPTRELAQQVTKHLQQIGELILKKSPYAIMSLTGGLSIQKQERLLKYDGSARVVVA 306
Query: 1410 TPG 1412
TPG
Sbjct: 307 TPG 309
Score = 47.0 bits (110), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 20/110 (18%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL---------------EKKVDLP 1282
D ++HRSGRTARA NEG+++++ E ++ L + + +P
Sbjct: 549 DVYIHRSGRTARAENEGVSVMICSPGESMGPLRKLRKLLAIKNGESDQQTKKKKWQKTVP 608
Query: 1283 DFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLEKAAKDMDI 1329
PI+ +++ +++R +A + + + + +KK+ DNWL+KAA +++I
Sbjct: 609 LLPIETDIVTQMRERSRIASEVADHDIVSNSLKKD--DNWLKKAADELEI 656
>gi|307104921|gb|EFN53172.1| hypothetical protein CHLNCDRAFT_25981 [Chlorella variabilis]
Length = 459
Score = 297 bits (761), Expect = 2e-77, Method: Composition-based stats.
Identities = 164/380 (43%), Positives = 239/380 (62%), Gaps = 10/380 (2%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L ALILAPTRELA+QV H+ GK + V +VGG+S KQ R+L K P ++VATPGR
Sbjct: 4 LRALILAPTRELALQVCEHLQAVGKGCGIWVVPIVGGISALKQERLLAKHPEVVVATPGR 63
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ GH HLT L ++++LVIDE DRM++ GH+ EL +IL + + QTFVFS
Sbjct: 64 LLDLMRAGHAHLTHLSRLSFLVIDEADRMVQQGHYGELSSILGAIPRRQQQARLQTFVFS 123
Query: 997 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK-SPKIVDLTEKIGITKTLTE 1055
ATLT L SL + + D + L D + + PKIVDLT + + + E
Sbjct: 124 ATLT--LPASLRRRLRKGGGGASGSSD--LDSLMDKIPFRGKPKIVDLTSQRRLADKVEE 179
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
+ + C DE+D YLY + +HPGRT+VF N+ISSV+RL +L +L LPLHA M QRQ
Sbjct: 180 AYLACGEDERDEYLYCLLTKHPGRTIVFVNAISSVRRLGAILKLLGVKALPLHAGMQQRQ 239
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
RL+ LDRF+ ++L+ATDVAARGLD+ + VIHY +P + ++Y+HRSGRTARA EG
Sbjct: 240 RLRALDRFKADPTAVLVATDVAARGLDVKDVRCVIHYQLPASVDVYVHRSGRTARAEAEG 299
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN 1235
+ + L+ E ++ + ++ + + P+FP+D S+L +++R+ LA ++ LE + K+
Sbjct: 300 VAVALVTPKENARFLALLRAMNRG-EPPEFPLDTSLLPAVRRRVRLAVRLDALERRQSKD 358
Query: 1236 RPDNWLHRSGRTARANNEGL 1255
+ + RS R A G+
Sbjct: 359 KAE----RSWRQQHAEQLGI 374
Score = 170 bits (431), Expect = 6e-39, Method: Composition-based stats.
Identities = 77/148 (52%), Positives = 104/148 (70%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PKIVDLT + + + E+ + C DE+D YLY + +HPGRT+VF N+ISSV+RL +L
Sbjct: 162 PKIVDLTSQRRLADKVEEAYLACGEDERDEYLYCLLTKHPGRTIVFVNAISSVRRLGAIL 221
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L LPLHA M QRQRL+ LDRF+ ++L+ATDVAARGLD+ + VIHY +P +
Sbjct: 222 KLLGVKALPLHAGMQQRQRLRALDRFKADPTAVLVATDVAARGLDVKDVRCVIHYQLPAS 281
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDE 652
++Y+HRSGRTARA EG+ V L+ E
Sbjct: 282 VDVYVHRSGRTARAEAEGVAVALVTPKE 309
Score = 151 bits (382), Expect = 3e-33, Method: Composition-based stats.
Identities = 95/235 (40%), Positives = 130/235 (55%), Gaps = 35/235 (14%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L ALILAPTRELA+QV H+ GK + V +VGG+S KQ R+L K P ++VATPGR
Sbjct: 4 LRALILAPTRELALQVCEHLQAVGKGCGIWVVPIVGGISALKQERLLAKHPEVVVATPGR 63
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ GH HLT L ++++LVIDE DRM++ GH+ EL +IL + PR+
Sbjct: 64 LLDLMRAGHAHLTHLSRLSFLVIDEADRMVQQGHYGELSSILGAI-------PRR----- 111
Query: 380 GHFPELKNILDRVTMTETSQPR-QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
Q R QTFVFSATLT L SL + + D +
Sbjct: 112 -----------------QQQARLQTFVFSATLT--LPASLRRRLRKGGGGASGSSD--LD 150
Query: 439 RLQDLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
L D + + PKIVDLT + + + E+ + C DE+D YLY + +HPGRT+
Sbjct: 151 SLMDKIPFRGKPKIVDLTSQRRLADKVEEAYLACGEDERDEYLYCLLTKHPGRTI 205
Score = 63.9 bits (154), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 41/59 (69%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALILAPTRELA+QV H+ GK + V +VGG+S KQ R+L K P ++VATPG L
Sbjct: 6 ALILAPTRELALQVCEHLQAVGKGCGIWVVPIVGGISALKQERLLAKHPEVVVATPGRL 64
Score = 51.2 bits (121), Expect = 0.005, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA EG+ + L+ E ++ + ++ + + P+FP+D S+L +++R
Sbjct: 283 DVYVHRSGRTARAEAEGVAVALVTPKENARFLALLRAMNRG-EPPEFPLDTSLLPAVRRR 341
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDI 1329
+ LA ++ LE + K++ + +W ++ A+ + I
Sbjct: 342 VRLAVRLDALERRQSKDKAERSWRQQHAEQLGI 374
>gi|342886208|gb|EGU86105.1| hypothetical protein FOXB_03374 [Fusarium oxysporum Fo5176]
Length = 774
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 189/526 (35%), Positives = 275/526 (52%), Gaps = 79/526 (15%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
D ++ ED V MA WV N+ I+ A+ + F PT IQ +P +LA D++G A+T
Sbjct: 192 DYADQED--VDMAAWVPLNLSPQILSAIAKLKFTKPTLIQEKTIPE-ILAGDDVIGKAQT 248
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKTLAFGIP++ E EL+E+ R
Sbjct: 249 GSGKTLAFGIPMV-------------------------ERWLELQEQGVE--------RT 275
Query: 876 KLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
A++L+PTRELA Q+ +H+ L G + V V GG+S +KQ R L K I++ T
Sbjct: 276 GPMAVVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSIQKQQRQLEKA-DIVIGT 334
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV------------ 981
PGRLWE + ++ KI +LV+DE DR+ + G F E ++I+ +
Sbjct: 335 PGRLWEVLSGDRALQSKFAKIKFLVVDEADRLFKVGQFKEAEDIIGALDGKSPGDDAESS 394
Query: 982 ------------TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 1029
+ RQT VFSAT L+ L K K + + L
Sbjct: 395 DEDEDEDEDDDDEEDDDRNARQTLVFSATFDKDLQTKL-----AGKGKSTGNDEEKMAYL 449
Query: 1030 QDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSI 1087
L + PK +D+ + + L E I C EKD YLY +L +PGR TLVF NSI
Sbjct: 450 MKCLKFRGEPKFIDVNPVSQMAQGLKEGLIECGAMEKDLYLYTVLLLNPGRRTLVFTNSI 509
Query: 1088 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 1147
S+V+RLT LL+ L + LPLH+ M Q+ RL++L+RF NSIL+ATDVAARGLDI ++
Sbjct: 510 SAVRRLTPLLSNLNLTALPLHSQMAQKARLRSLERFTAARNSILIATDVAARGLDIKQVD 569
Query: 1148 HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--------PLYIKMFNSLEKK 1199
V+HYHVPR+++ YIHRSGRTAR + G++++L DE+ ++ + + +++
Sbjct: 570 QVLHYHVPRSADTYIHRSGRTARGESSGVSVILCSPDEVLPTRRLASKVHAERSSGAKRE 629
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
+ ID + S +K R+DLAK I + + +K K + D WL +
Sbjct: 630 HFIQTLLIDRRMASRLKPRVDLAKKIADTVLAKEKAHSDDTWLRNA 675
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 191/563 (33%), Positives = 272/563 (48%), Gaps = 113/563 (20%)
Query: 97 DPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTS---ANKELLEVDTSNNEDMFVQMAEW 153
D + K E+ Q D+ S K + T+ + AN D ++ ED V MA W
Sbjct: 153 DGKNSGTKKEDEQLDKASKVVQKSSARGGNTFGALADAN------DYADQED--VDMAAW 204
Query: 154 VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 213
V N+ I+ A+ + F PT IQ +P +LA D++G A+TGSGKTLAFGIP++
Sbjct: 205 VPLNLSPQILSAIAKLKFTKPTLIQEKTIPE-ILAGDDVIGKAQTGSGKTLAFGIPMV-- 261
Query: 214 IVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAI 273
E EL+E+ R A++L+PTRELA
Sbjct: 262 -----------------------ERWLELQEQGVE--------RTGPMAVVLSPTRELAK 290
Query: 274 QVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
Q+ +H+ L G + V V GG+S +KQ R L K I++ TPGRLWE +
Sbjct: 291 QLGDHLKALCDGLPSAPYVCVVTGGLSIQKQQRQLEKA-DIVIGTPGRLWEVLSGDRALQ 349
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
++ KI +LV+DE DR+ + G F E ++I+ + ++ E E ++ D
Sbjct: 350 SKFAKIKFLVVDEADRLFKVGQFKEAEDIIGALDGKSPGDDAESSDED----EDEDEDDD 405
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
+ RQT VFSAT L+
Sbjct: 406 DEEDDDRNARQTLVFSATFDKDLQ------------------------------------ 429
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
TK + K +EK +YL C + + PK +D+
Sbjct: 430 ---------TKLAGKGKSTGNDEEKMAYLMK----------CLKFRG-----EPKFIDVN 465
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCS 570
+ + L E I C EKD YLY +L +PGR TLVF NSIS+V+RLT LL+ L +
Sbjct: 466 PVSQMAQGLKEGLIECGAMEKDLYLYTVLLLNPGRRTLVFTNSISAVRRLTPLLSNLNLT 525
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
LPLH+ M Q+ RL++L+RF NSIL+ATDVAARGLDI ++ V+HYHVPR+++ YIH
Sbjct: 526 ALPLHSQMAQKARLRSLERFTAARNSILIATDVAARGLDIKQVDQVLHYHVPRSADTYIH 585
Query: 631 RSGRTARANNEGLTVVLIESDEI 653
RSGRTAR + G++V+L DE+
Sbjct: 586 RSGRTARGESSGVSVILCSPDEV 608
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 9/108 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--------PLYIKMFNSLEKKVDLPDFPIDES 1289
D ++HRSGRTAR + G++++L DE+ ++ + + +++ + ID
Sbjct: 581 DTYIHRSGRTARGESSGVSVILCSPDEVLPTRRLASKVHAERSSGAKREHFIQTLLIDRR 640
Query: 1290 VLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
+ S +K R+DLAK I + + +K K + D WL AA ++ + D E+L
Sbjct: 641 MASRLKPRVDLAKKIADTVLAKEKAHSDDTWLRNAADELGVEYDSEDL 688
Score = 45.8 bits (107), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
A++L+PTRELA Q+ +H+ L G + V V GG+S +KQ R L K I++ TPG
Sbjct: 279 AVVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSIQKQQRQLEKA-DIVIGTPGR 337
Query: 1414 L 1414
L
Sbjct: 338 L 338
>gi|156060651|ref|XP_001596248.1| hypothetical protein SS1G_02468 [Sclerotinia sclerotiorum 1980]
gi|160409986|sp|A7EAY2.1|MAK5_SCLS1 RecName: Full=ATP-dependent RNA helicase mak5
gi|154699872|gb|EDN99610.1| hypothetical protein SS1G_02468 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 780
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 201/505 (39%), Positives = 283/505 (56%), Gaps = 61/505 (12%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V+++ WV+ ++ + AL + GF PT IQS +P +LA D+VG A TGSGKTLAFG
Sbjct: 210 VEVSGWVELDLSSNTLMALSKMGFSKPTPIQSEAIPE-VLAGHDVVGKASTGSGKTLAFG 268
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPI+ E+ EV EL+E+ +KK+ ALIL+P
Sbjct: 269 IPIV---------------------EKWLEVYGELDEDE------LKKSTRPPTALILSP 301
Query: 885 TRELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942
TRELA Q+ HI K P VA V GG+S +KQ R L+K I++ TPGRLWE I
Sbjct: 302 TRELAHQLTEHITTLCKGMPTSPYVAAVTGGLSVQKQQRQLSKA-DIIIGTPGRLWEVIS 360
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT---------ETSQPRQTF 993
+ L ++ +LVIDE DR++ GHF E + IL+ + T +T PRQT
Sbjct: 361 SSNELSAGLKQVRFLVIDEADRLLTDGHFKEAEEILNALDRTHGNEDDDEEDTLPPRQTL 420
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITK 1051
VFSAT L+ L KG+ K S+ S++ L LN + PK VD+ +
Sbjct: 421 VFSATFHKGLQQKL-AGKGKQSFKDDSQ---SMEYLLKKLNFREEKPKFVDVNPISQMAA 476
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
L E + C +EKD YLY +L HP RTL+F NSI SV+RLT +L L LH+
Sbjct: 477 NLKEGMVECGGEEKDLYLYSLLLHHPNQRTLIFTNSIHSVRRLTPMLQTLNIPAHSLHSQ 536
Query: 1111 MNQRQRLKNLDRFRDQNN--SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
M Q+ R++++++F NN S+L+ATDVAARGLDI G++ VIHYH+PRT+++Y+HRSGRT
Sbjct: 537 MIQKARMRSIEKFSRTNNTGSVLVATDVAARGLDIGGVQLVIHYHLPRTADMYVHRSGRT 596
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMF------NSL-----EKKVDLPDFPIDESVLSLIKK 1217
ARA G +++L +E+ ++ N+L + K + ID V+S +K
Sbjct: 597 ARAAASGSSILLCGPEEVVGTRRLVAKVHAQNALHGEGKKSKFYIRSLDIDRRVVSRLKP 656
Query: 1218 RIDLAKSI-EYLESKIKKNRPDNWL 1241
R+ LAK I + +K KK D+W+
Sbjct: 657 RVTLAKKIADSALAKEKKGHDDDWV 681
Score = 263 bits (671), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 188/519 (36%), Positives = 254/519 (48%), Gaps = 127/519 (24%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V+++ WV+ ++ + AL + GF PT IQS +P +LA D+VG A TGSGKTLAFG
Sbjct: 210 VEVSGWVELDLSSNTLMALSKMGFSKPTPIQSEAIPE-VLAGHDVVGKASTGSGKTLAFG 268
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IPI+ E+ EV EL+E+ +KK+ ALIL+P
Sbjct: 269 IPIV---------------------EKWLEVYGELDEDE------LKKSTRPPTALILSP 301
Query: 268 TRELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 325
TRELA Q+ HI K P VA V GG+S +KQ R L+K I++ TPGRLWE I
Sbjct: 302 TRELAHQLTEHITTLCKGMPTSPYVAAVTGGLSVQKQQRQLSKA-DIIIGTPGRLWEVIS 360
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385
+ L ++ +LVIDE DR++ GHF E + IL
Sbjct: 361 SSNELSAGLKQVRFLVIDEADRLLTDGHFKEAEEIL------------------------ 396
Query: 386 KNILDRVTMTE------TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
N LDR E T PRQT VFSAT L+ L KG S K
Sbjct: 397 -NALDRTHGNEDDDEEDTLPPRQTLVFSATFHKGLQQKL-----------AGKGKQSFK- 443
Query: 440 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499
DS ++L+
Sbjct: 444 ------------------------------------DDSQSMEYLLKK------------ 455
Query: 500 LNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISS 556
LN + PK VD+ + L E + C +EKD YLY +L HP RTL+F NSI S
Sbjct: 456 LNFREEKPKFVDVNPISQMAANLKEGMVECGGEEKDLYLYSLLLHHPNQRTLIFTNSIHS 515
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN--SILLATDVAARGLDIPGIE 614
V+RLT +L L LH+ M Q+ R++++++F NN S+L+ATDVAARGLDI G++
Sbjct: 516 VRRLTPMLQTLNIPAHSLHSQMIQKARMRSIEKFSRTNNTGSVLVATDVAARGLDIGGVQ 575
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
VIHYH+PRT+++Y+HRSGRTARA G +++L +E+
Sbjct: 576 LVIHYHLPRTADMYVHRSGRTARAAASGSSILLCGPEEV 614
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGA 1413
ALIL+PTRELA Q+ HI K P VA V GG+S +KQ R L+K I++ TPG
Sbjct: 296 ALILSPTRELAHQLTEHITTLCKGMPTSPYVAAVTGGLSVQKQQRQLSKA-DIIIGTPGR 354
Query: 1414 L 1414
L
Sbjct: 355 L 355
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF------NSL-----EKKVDLPDFPI 1286
D ++HRSGRTARA G +++L +E+ ++ N+L + K + I
Sbjct: 587 DMYVHRSGRTARAAASGSSILLCGPEEVVGTRRLVAKVHAQNALHGEGKKSKFYIRSLDI 646
Query: 1287 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
D V+S +K R+ LAK I + +K KK D+W++ AA+++ + D E
Sbjct: 647 DRRVVSRLKPRVTLAKKIADSALAKEKKGHDDDWVKNAAEELGVEYDSEEF 697
>gi|325096020|gb|EGC49330.1| ATP-dependent RNA helicase MAK5 [Ajellomyces capsulatus H88]
Length = 770
Score = 297 bits (760), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 198/530 (37%), Positives = 281/530 (53%), Gaps = 71/530 (13%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
E LE + +E V ++ W +I I +L + F PT IQ+ +P + + D+V
Sbjct: 173 EALEDEVDGDE---VDVSRWDPLDISAEIQTSLSKLRFAKPTPIQTACIP-LIASGHDVV 228
Query: 811 GAAETGSGKTLAFGIPILTGIV-NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869
G A TGSGKTLAFGIPIL + N+ E P + ND L +
Sbjct: 229 GKASTGSGKTLAFGIPILEYYLKNRREEPVQH--NDGELSSKYP---------------- 270
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKC 926
ALIL+PTRELA Q+ HI P ++A + GG+S +KQ R+L
Sbjct: 271 --------IALILSPTRELAHQLSKHITALCTNAPNINARIALLTGGLSVQKQQRVLANA 322
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-------- 978
I++ TPGRLW+ I GH L + I +LVIDE DR++ GHF E++ IL
Sbjct: 323 -DIVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRLLSEGHFKEVEEILTALDRKEI 381
Query: 979 -DRVTMTETSQ-------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030
D+VT S+ PRQT VFSAT L+ L KG+ + S++ L
Sbjct: 382 HDKVTADSESEDDASKVSPRQTLVFSATFHKGLQQKLA-GKGRYFDGDLLDDKQSMEYLL 440
Query: 1031 DLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSI 1087
LN + PK +D+ + + L E + C EKD YLY +L HP RTLVF NSI
Sbjct: 441 KKLNFREDRPKFIDVNPVAQMAENLKEGLVECPAMEKDLYLYTLMLYHPQHRTLVFTNSI 500
Query: 1088 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIP 1144
S+V+RLT L L L LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI
Sbjct: 501 SAVRRLTVFLQNLNLPALALHSSMAQKARLRSVERFSSPTADPSSILVATDVAARGLDIK 560
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------- 1197
GI+ +IHYHVPRT++ Y+HRSGRTARA+ G +++L +EI ++ +
Sbjct: 561 GIDLIIHYHVPRTADTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHASSTTSS 620
Query: 1198 -----KKVDLPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
K++ L +D V++ ++ R+ LAK I + +K K + ++WL
Sbjct: 621 SSSVTKRLPLHSVDLDRRVIARVRHRVALAKKITNHTLAKEKLSSENDWL 670
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 191/536 (35%), Positives = 259/536 (48%), Gaps = 122/536 (22%)
Query: 134 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
E LE + +E V ++ W +I I +L + F PT IQ+ +P + + D+V
Sbjct: 173 EALEDEVDGDE---VDVSRWDPLDISAEIQTSLSKLRFAKPTPIQTACIP-LIASGHDVV 228
Query: 194 GAAETGSGKTLAFGIPILTGIV-NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252
G A TGSGKTLAFGIPIL + N+ E P + ND L +
Sbjct: 229 GKASTGSGKTLAFGIPILEYYLKNRREEPVQH--NDGELSSKYP---------------- 270
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKC 309
ALIL+PTRELA Q+ HI P ++A + GG+S +KQ R+L
Sbjct: 271 --------IALILSPTRELAHQLSKHITALCTNAPNINARIALLTGGLSVQKQQRVLANA 322
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
I++ TPGRLW+ I GH L + I +LVIDE DR++ GHF E++ IL T
Sbjct: 323 -DIVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRLLSEGHFKEVEEIL-------T 374
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTETSQ-------PRQTFVFSATLTHSLKNSLNLKK 422
+ R K I D+VT S+ PRQT VFSAT L+ L K
Sbjct: 375 ALDR------------KEIHDKVTADSESEDDASKVSPRQTLVFSATFHKGLQQKL-AGK 421
Query: 423 GQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480
G+ + S++ L LN + PK +D+ + + L E + C EKD YL
Sbjct: 422 GRYFDGDLLDDKQSMEYLLKKLNFREDRPKFIDVNPVAQMAENLKEGLVECPAMEKDLYL 481
Query: 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540
Y +L HP
Sbjct: 482 YTLMLYHP---------------------------------------------------- 489
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSI 597
QH RTLVF NSIS+V+RLT L L L LH+SM Q+ RL++++RF +SI
Sbjct: 490 -QH--RTLVFTNSISAVRRLTVFLQNLNLPALALHSSMAQKARLRSVERFSSPTADPSSI 546
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
L+ATDVAARGLDI GI+ +IHYHVPRT++ Y+HRSGRTARA+ G +++L +EI
Sbjct: 547 LVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRSGRTARASASGKSILLCAPEEI 602
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------------KKVDLPDFP 1285
D ++HRSGRTARA+ G +++L +EI ++ + K++ L
Sbjct: 575 DTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHASSTTSSSSSVTKRLPLHSVD 634
Query: 1286 IDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+D V++ ++ R+ LAK I + +K K + ++WL AA D+ + D E +
Sbjct: 635 LDRRVIARVRHRVALAKKITNHTLAKEKLSSENDWLRSAADDLGVDYDSEEFAE 688
Score = 49.3 bits (116), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 272 ALILSPTRELAHQLSKHITALCTNAPNINARIALLTGGLSVQKQQRVLANA-DIVIGTPG 330
Query: 1413 AL 1414
L
Sbjct: 331 RL 332
>gi|255079576|ref|XP_002503368.1| helicase [Micromonas sp. RCC299]
gi|226518634|gb|ACO64626.1| helicase [Micromonas sp. RCC299]
Length = 1160
Score = 297 bits (760), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 203/585 (34%), Positives = 291/585 (49%), Gaps = 127/585 (21%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W++F++ ++RAL GF PT IQ+ + A+ R D++GAAETGSGKTL
Sbjct: 344 DAGADVSNWLQFDLHPKLLRALQDLGFSDPTPIQTECLNPAIKGRCDVIGAAETGSGKTL 403
Query: 205 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEE--------------------------- 237
AFG+PIL I+ + + +E ++S E+ E
Sbjct: 404 AFGLPILHRILTQRDEEADESASESEDAEQRERGGDGGGGGGAEGGAEGGAEGGADAEGD 463
Query: 238 -----VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVAC 292
VL+ A+ + + R L ALILAPTRELA+QV + + K+T V V
Sbjct: 464 DPFALVLDGSGRAGADAGMKLDRKRRALRALILAPTRELAMQVCDMLKAVAKHTDVDVVP 523
Query: 293 VVGGMSTEKQLRILNKCPHILVATPGRLWEFI-QLGHFHLTELYKINYLVIDETDRMIES 351
VVGGMS +KQ R+L + P ++VATPGRLWE + Q GH H +L ++N+LV+DE DRM+E
Sbjct: 524 VVGGMSLQKQERLLRRRPEVVVATPGRLWELMHQQGHEHFVDLGRLNFLVLDEADRMVER 583
Query: 352 GHFPELKNILDRVTMTE----------------------------TSQPRQTMIESGHFP 383
GHF EL +I++ + + +S PR G
Sbjct: 584 GHFRELSDIIETLPIPPRIKRPPGAAKATPETLKVFKSRAGNADASSAPRGKKGGKGQKG 643
Query: 384 ELKNILDRVTMTETS---------QP-----RQTFVFSATLTHSLKNSLNLKKGQSKSKK 429
I+D + E S +P RQTFVFSATLT LKK Q+
Sbjct: 644 GNAEIVDTDIVEEASGDGAAAVNLRPSQMLDRQTFVFSATLTVPDNVRRKLKKRQA---- 699
Query: 430 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489
Q ++ + K G +L E+ +Y G
Sbjct: 700 -----------QAFVSGEDKKKAASGASAGTLASLMEA-----------VPFY------G 731
Query: 490 RTLCEEIQDLLNIKSPKIVDLTEKI-GITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
R K+VDLT++ + K +TES + C DE+D+ LY+ + Q PG +
Sbjct: 732 RV--------------KLVDLTDQSQTVAKGVTESSLECTEDERDALLYHILSQEPGLVI 777
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN-----NSILLATDV 603
VF N+IS+++RL +L L+ LH +M QR RLK LDRF+ SIL+ATDV
Sbjct: 778 VFVNAISALRRLLAILKTLRLPVEGLHGNMQQRARLKYLDRFKKGAGGGGKTSILVATDV 837
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
AARG+DI G++ V+HY VP +++ Y+HRSGRT RAN EG +V+L+
Sbjct: 838 AARGIDIKGVDLVVHYQVPMSADTYVHRSGRTGRANAEGASVMLV 882
Score = 192 bits (487), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 169/291 (58%), Gaps = 23/291 (7%)
Query: 990 RQTFVFSATLTHSLKNSLNLKKGQSKS------KKVSKGDPSIKRLQDLLNI----KSPK 1039
RQTFVFSATLT LKK Q+++ KK + S L L+ K
Sbjct: 675 RQTFVFSATLTVPDNVRRKLKKRQAQAFVSGEDKKKAASGASAGTLASLMEAVPFYGRVK 734
Query: 1040 IVDLTEKI-GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 1098
+VDLT++ + K +TES + C DE+D+ LY+ + Q PG +VF N+IS+++RL +L
Sbjct: 735 LVDLTDQSQTVAKGVTESSLECTEDERDALLYHILSQEPGLVIVFVNAISALRRLLAILK 794
Query: 1099 MLKCSPLPLHASMNQRQRLKNLDRFRDQN-----NSILLATDVAARGLDIPGIEHVIHYH 1153
L+ LH +M QR RLK LDRF+ SIL+ATDVAARG+DI G++ V+HY
Sbjct: 795 TLRLPVEGLHGNMQQRARLKYLDRFKKGAGGGGKTSILVATDVAARGIDIKGVDLVVHYQ 854
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLS 1213
VP +++ Y+HRSGRT RAN EG +++L+ E Y + +L ++ LP FP ES ++
Sbjct: 855 VPMSADTYVHRSGRTGRANAEGASVMLVTPAERQRYRTLLRNLNREAPLPSFPTVESAVA 914
Query: 1214 LIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDE 1264
K+R+ +A+ ++ L +K+R + RS N + L + L +SDE
Sbjct: 915 EAKRRVAVARKLDKLVHAKQKDRAEAEWRRS------NAQALGIEL-DSDE 958
Score = 169 bits (429), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 143/251 (56%), Gaps = 33/251 (13%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W++F++ ++RAL GF PT IQ+ + A+ R D++GAAETGSGKTL
Sbjct: 344 DAGADVSNWLQFDLHPKLLRALQDLGFSDPTPIQTECLNPAIKGRCDVIGAAETGSGKTL 403
Query: 822 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEE--------------------------- 854
AFG+PIL I+ + + +E ++S E+ E
Sbjct: 404 AFGLPILHRILTQRDEEADESASESEDAEQRERGGDGGGGGGAEGGAEGGAEGGADAEGD 463
Query: 855 -----VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVAC 909
VL+ A+ + + R L ALILAPTRELA+QV + + K+T V V
Sbjct: 464 DPFALVLDGSGRAGADAGMKLDRKRRALRALILAPTRELAMQVCDMLKAVAKHTDVDVVP 523
Query: 910 VVGGMSTEKQLRILNKCPHILVATPGRLWEFI-QLGHFHLTELYKINYLVIDETDRMIES 968
VVGGMS +KQ R+L + P ++VATPGRLWE + Q GH H +L ++N+LV+DE DRM+E
Sbjct: 524 VVGGMSLQKQERLLRRRPEVVVATPGRLWELMHQQGHEHFVDLGRLNFLVLDEADRMVER 583
Query: 969 GHFPELKNILD 979
GHF EL +I++
Sbjct: 584 GHFRELSDIIE 594
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRT RAN EG +++L+ E Y + +L ++ LP FP ES ++ K+R
Sbjct: 860 DTYVHRSGRTGRANAEGASVMLVTPAERQRYRTLLRNLNREAPLPSFPTVESAVAEAKRR 919
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDE 1334
+ +A+ ++ L +K+R + W A+ + I +D +
Sbjct: 920 VAVARKLDKLVHAKQKDRAEAEWRRSNAQALGIELDSD 957
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R + ALILAPTRELA+QV + + K+T V V VVGGMS +KQ R+L + P ++VAT
Sbjct: 488 RRALRALILAPTRELAMQVCDMLKAVAKHTDVDVVPVVGGMSLQKQERLLRRRPEVVVAT 547
Query: 1411 PGAL 1414
PG L
Sbjct: 548 PGRL 551
>gi|260949921|ref|XP_002619257.1| hypothetical protein CLUG_00416 [Clavispora lusitaniae ATCC 42720]
gi|238846829|gb|EEQ36293.1| hypothetical protein CLUG_00416 [Clavispora lusitaniae ATCC 42720]
Length = 801
Score = 296 bits (759), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 185/508 (36%), Positives = 267/508 (52%), Gaps = 59/508 (11%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+ + +W + + L GFK PT IQ +P AL KD++G A TGSGKTLA+G
Sbjct: 210 IDLPQWQNVPLSAYTLSGLQALGFKQPTPIQKSAIPLALEG-KDVIGKATTGSGKTLAYG 268
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPIL ++K+ ++ L + KKT +I AP
Sbjct: 269 IPILEKYISKIAE------------------IKTLRQ---------KKTIPAPTGIIFAP 301
Query: 885 TRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
TRELA QV +H+ KY P+ + V GG+S ++Q R+L+ P I+VATPGR E I
Sbjct: 302 TRELAHQVSDHLNKIAKYAPLASNGIVSVTGGLSIQRQERLLSYGPGIIVATPGRFLELI 361
Query: 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET---SQPRQTFVFSAT 998
+ + +V+DE DR+++ GHF E + ILD + QT VFSAT
Sbjct: 362 EKSEEFTKRMALTEIIVLDEADRLLQDGHFEEFERILDLLGKNRDKAYGWRWQTLVFSAT 421
Query: 999 LTHSLKNSLNLKKGQSKSKKVSKG-----DPSIKRLQDLLNIKS--PKIVDLTEKIGITK 1051
+ L L+ K G K K S G D ++ LQ L K P + D K ++
Sbjct: 422 FSRDLFFKLD-KSG--KGTKASSGALVANDEILQLLQKKLKFKDSKPALCDANPKEIVSG 478
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
+TE+ + C E+D YLYYF+L +PG TLVF NS+ SV+RL LL L +H+SM
Sbjct: 479 QITEALVECGPAERDLYLYYFVLMYPGSTLVFANSVESVRRLVPLLENLNIPAFSIHSSM 538
Query: 1112 NQRQRLKNLDRFRD--QNN--SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
Q+QR++ L+RF++ Q N ++L+ATDVAARGLDIP I+HV HYH+PR+++ YIHRSGR
Sbjct: 539 IQKQRMRALERFKEATQKNKSAVLVATDVAARGLDIPSIDHVAHYHLPRSADTYIHRSGR 598
Query: 1168 TARANNEGLTLVLIESDEIPLYIKMFNSL----------EKKVDLPDFPIDESVLSLIKK 1217
TARA EG++++ E K L K D+ PI+ ++ I++
Sbjct: 599 TARAGKEGVSVMFCSPQEASGPFKKLRKLVASSAEGGKFNAKADVKLLPIEYDIVQQIRE 658
Query: 1218 RIDLAKSIEYLESKIKKNRPDN-WLHRS 1244
R+ +A + R +N WL ++
Sbjct: 659 RVRMAGKLAGSTMSNTATRKENSWLKQA 686
Score = 264 bits (675), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 175/514 (34%), Positives = 246/514 (47%), Gaps = 116/514 (22%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+ + +W + + L GFK PT IQ +P AL KD++G A TGSGKTLA+G
Sbjct: 210 IDLPQWQNVPLSAYTLSGLQALGFKQPTPIQKSAIPLALEG-KDVIGKATTGSGKTLAYG 268
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IPIL ++K+ ++ L + KKT +I AP
Sbjct: 269 IPILEKYISKIAE------------------IKTLRQ---------KKTIPAPTGIIFAP 301
Query: 268 TRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 324
TRELA QV +H+ KY P+ + V GG+S ++Q R+L+ P I+VATPGR E I
Sbjct: 302 TRELAHQVSDHLNKIAKYAPLASNGIVSVTGGLSIQRQERLLSYGPGIIVATPGRFLELI 361
Query: 325 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ + +V+DE DR+++ GHF E F
Sbjct: 362 EKSEEFTKRMALTEIIVLDEADRLLQDGHFEE-------------------------FER 396
Query: 385 LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
+ ++L + QT VFSAT + L L+ K KG
Sbjct: 397 ILDLLGKNRDKAYGWRWQTLVFSATFSRDLFFKLD---------KSGKG----------- 436
Query: 445 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
T S L +DE ILQ +Q L K
Sbjct: 437 ------------------TKASSGALVANDE--------ILQL--------LQKKLKFKD 462
Query: 505 --PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 562
P + D K ++ +TE+ + C E+D YLYYF+L +PG TLVF NS+ SV+RL
Sbjct: 463 SKPALCDANPKEIVSGQITEALVECGPAERDLYLYYFVLMYPGSTLVFANSVESVRRLVP 522
Query: 563 LLTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNN--SILLATDVAARGLDIPGIEHVIH 618
LL L +H+SM Q+QR++ L+RF++ Q N ++L+ATDVAARGLDIP I+HV H
Sbjct: 523 LLENLNIPAFSIHSSMIQKQRMRALERFKEATQKNKSAVLVATDVAARGLDIPSIDHVAH 582
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
YH+PR+++ YIHRSGRTARA EG++V+ E
Sbjct: 583 YHLPRSADTYIHRSGRTARAGKEGVSVMFCSPQE 616
Score = 60.5 bits (145), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPG 1412
+I APTRELA QV +H+ KY P+ + V GG+S ++Q R+L+ P I+VATPG
Sbjct: 296 GIIFAPTRELAHQVSDHLNKIAKYAPLASNGIVSVTGGLSIQRQERLLSYGPGIIVATPG 355
Score = 48.1 bits (113), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL----------EKKVDLPDFPID 1287
D ++HRSGRTARA EG++++ E K L K D+ PI+
Sbjct: 590 DTYIHRSGRTARAGKEGVSVMFCSPQEASGPFKKLRKLVASSAEGGKFNAKADVKLLPIE 649
Query: 1288 ESVLSLIKKRIDLAKSIEYLESKIKKNRPDN-WLEKAAKDMDI 1329
++ I++R+ +A + R +N WL++AA+D+
Sbjct: 650 YDIVQQIRERVRMAGKLAGSTMSNTATRKENSWLKQAAEDLGF 692
>gi|225679099|gb|EEH17383.1| ATP-dependent RNA helicase mak5 [Paracoccidioides brasiliensis Pb03]
Length = 772
Score = 296 bits (759), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 205/562 (36%), Positives = 293/562 (52%), Gaps = 79/562 (14%)
Query: 726 QSDEPHSKK------LKQKKKKKQTYTSANKELLEVDTSNNED--MFVQMAEWVKFNIPE 777
++DEP KK K K KK + + + D+ N ED V ++ W I
Sbjct: 144 RADEPREKKRLKLKEAKGKNNKKHAPRTDVQPGMSFDSLNEEDDQEDVDVSAWEPLGISA 203
Query: 778 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 837
+ +L + F PT IQS +P + A D+VG A TGSGKTLAFGIPIL LEN
Sbjct: 204 ELQTSLAKLKFAKPTPIQSACIP-VIAAGHDVVGKAPTGSGKTLAFGIPILE---YHLEN 259
Query: 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 897
+E ++G + +R ALIL+PTRELA Q+ H+
Sbjct: 260 NRDEPIQNTGSD----------------------SSRKHPIALILSPTRELAHQISKHLT 297
Query: 898 DAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
P ++A + GG+S +KQ R+L I++ TPGRLW+ I G + + I
Sbjct: 298 AFISNAPNINARIALLTGGLSVQKQHRLLANA-DIVIGTPGRLWDVISNGQGLIRKFQSI 356
Query: 955 NYLVIDETDRMIESGHFPELKNIL---DRVTMTET----------------SQPRQTFVF 995
+LV+DE DR++ GHF E++ IL DR + + S PRQT VF
Sbjct: 357 KFLVVDEADRLLSEGHFKEVEEILTALDRKEINDGVEESDSDSESERANIKSFPRQTLVF 416
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKG----DPSIKRLQDLLNIKS--PKIVDLTEKIGI 1049
SAT L+ L KS+ + G S++ L + LN + PK +D+ +
Sbjct: 417 SATFHRGLQQKL-----AGKSRFIDGGLLDNKQSMEYLLEKLNFREEKPKFIDVNPVSQM 471
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
+ L E + C EKD YLY +L H RTLVF NSIS+V+RLT L L L LH
Sbjct: 472 AENLKEGLVECPAMEKDLYLYTLMLYHLNYRTLVFTNSISAVRRLTSFLQNLNLPALSLH 531
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
+SM Q+ RL++++RF +SIL+ATDVAARGLDI GI+ +IHYHVPRT++ Y+HRSGRT
Sbjct: 532 SSMAQKARLRSVERF-SSPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRSGRT 590
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSLE--------KKVDLPDFPIDESVLSLIKKRID 1220
ARA+ G +++L +EI ++ + K++ L +D V++ ++ R+
Sbjct: 591 ARASASGKSILLCAPEEIVGVARLAAKVHTSNLVTSSKRLPLHSVDLDRHVIARVRPRVA 650
Query: 1221 LAKSI-EYLESKIKKNRPDNWL 1241
LAK I E+ +K K D+WL
Sbjct: 651 LAKKITEHTLAKEKLLSEDDWL 672
Score = 262 bits (670), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 191/562 (33%), Positives = 273/562 (48%), Gaps = 114/562 (20%)
Query: 109 QSDEPSSKK------LKQKKKKKQTYTSANKELLEVDTSNNED--MFVQMAEWVKFNIPE 160
++DEP KK K K KK + + + D+ N ED V ++ W I
Sbjct: 144 RADEPREKKRLKLKEAKGKNNKKHAPRTDVQPGMSFDSLNEEDDQEDVDVSAWEPLGISA 203
Query: 161 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 220
+ +L + F PT IQS +P + A D+VG A TGSGKTLAFGIPIL LEN
Sbjct: 204 ELQTSLAKLKFAKPTPIQSACIP-VIAAGHDVVGKAPTGSGKTLAFGIPILE---YHLEN 259
Query: 221 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 280
+E ++G + +R ALIL+PTRELA Q+ H+
Sbjct: 260 NRDEPIQNTGSD----------------------SSRKHPIALILSPTRELAHQISKHLT 297
Query: 281 DAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
P ++A + GG+S +KQ R+L I++ TPGRLW+ I G + + I
Sbjct: 298 AFISNAPNINARIALLTGGLSVQKQHRLLANA-DIVIGTPGRLWDVISNGQGLIRKFQSI 356
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
+LV+DE DR++ GHF E++ IL T+ R+ + + + + +R +
Sbjct: 357 KFLVVDEADRLLSEGHFKEVEEIL-------TALDRKEINDGVEESDSDSESERANI--K 407
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG----DPSIKRLQDLLNIKS--PKI 451
S PRQT VFSAT L+ L KS+ + G S++ L + LN + PK
Sbjct: 408 SFPRQTLVFSATFHRGLQQKL-----AGKSRFIDGGLLDNKQSMEYLLEKLNFREEKPKF 462
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
+D+ + + L E + C EKD YLY +L H LN ++
Sbjct: 463 IDVNPVSQMAENLKEGLVECPAMEKDLYLYTLMLYH------------LNYRT------- 503
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
LVF NSIS+V+RLT L L
Sbjct: 504 ------------------------------------LVFTNSISAVRRLTSFLQNLNLPA 527
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
L LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI GI+ +IHYHVPRT++ Y+HR
Sbjct: 528 LSLHSSMAQKARLRSVERF-SSPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHR 586
Query: 632 SGRTARANNEGLTVVLIESDEI 653
SGRTARA+ G +++L +EI
Sbjct: 587 SGRTARASASGKSILLCAPEEI 608
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE--------KKVDLPDFPIDES 1289
D ++HRSGRTARA+ G +++L +EI ++ + K++ L +D
Sbjct: 581 DTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHTSNLVTSSKRLPLHSVDLDRH 640
Query: 1290 VLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
V++ ++ R+ LAK I E+ +K K D+WL AA+D+ + D E +
Sbjct: 641 VIARVRPRVALAKKITEHTLAKEKLLSEDDWLRSAAEDLGVDYDREEFAE 690
Score = 48.5 bits (114), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 279 ALILSPTRELAHQISKHLTAFISNAPNINARIALLTGGLSVQKQHRLLANA-DIVIGTPG 337
Query: 1413 AL 1414
L
Sbjct: 338 RL 339
>gi|365982507|ref|XP_003668087.1| hypothetical protein NDAI_0A06900 [Naumovozyma dairenensis CBS 421]
gi|343766853|emb|CCD22844.1| hypothetical protein NDAI_0A06900 [Naumovozyma dairenensis CBS 421]
Length = 659
Score = 296 bits (758), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 192/546 (35%), Positives = 305/546 (55%), Gaps = 88/546 (16%)
Query: 765 VQMAEW---VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
+ + EW KF++ TI++ L GF PT IQ+ +P AL DI+G A TGSGKTL
Sbjct: 66 IDLPEWTNLAKFSL--TILQGLQSLGFTKPTAIQAKAIPYAL-ENADIMGKASTGSGKTL 122
Query: 822 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
A+GIPIL E +++ +++S+ T +NK ALI
Sbjct: 123 AYGIPIL------------------------ENLIKTAKKDSSQTDGI----KNKPIALI 154
Query: 882 LAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPG 935
PTRELA QV H+ + K +P + + GG+S +KQ R+L + I++ATPG
Sbjct: 155 FTPTRELAQQVTKHLQNISQLFLKNSPYAILSLTGGLSIQKQERLLKYDNSGKIVIATPG 214
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD-------RVTMTETSQ 988
R E ++ + + +I+ LV+DE DR+++ GHF E + IL + + + +Q
Sbjct: 215 RFLELLEKNNDLIERFCQIDTLVLDEADRLLQDGHFDEFEKILKYLGQKRKELKLKKANQ 274
Query: 989 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR-LQDLLN----IKSPKIVDL 1043
QT ++SAT + L + L +S +KK+ + + ++ L L+N P I+D+
Sbjct: 275 YWQTMIYSATFSIDLFDKLANSSWKS-NKKIKQYENEMETVLHHLMNKIHFQSKPIIIDM 333
Query: 1044 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 1103
I+ + ES I C E+D Y YYFI +PG TL+FCN+I SVK+L+ +L +LK S
Sbjct: 334 NPDQKISSQIKESLIECAPTERDLYCYYFITMYPGSTLIFCNAIESVKKLSAMLNILKIS 393
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQ--------NNSILLATDVAARGLDIPGIEHVIHYHVP 1155
+H+SM Q+ RLKNL++++ Q ++L+A+DVAARGLDIP I+HVIHYH+P
Sbjct: 394 SFQIHSSMTQKNRLKNLEKYQQQALVNTPLGKPTVLIASDVAARGLDIPDIKHVIHYHLP 453
Query: 1156 RTSEIYIHRSGRTARANNEGLTLVLIESDEI--PL------------YIKMFNSLEKKVD 1201
R++++YIHRSGRTARA+NEG+++++ E PL K F + + +
Sbjct: 454 RSADVYIHRSGRTARADNEGVSVMVCSPQEAMGPLRKLRKVLADKSGSSKSFKNKKWQKT 513
Query: 1202 LPDFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLHRSGRTARANNEGLTLV 1258
+P PI+ ++S +++R LA + + S ++K+ DNW+ ++ A++ G+
Sbjct: 514 VPLLPIEIDIVSQLRERSKLASELADHDMASSSLRKD--DNWMKKA-----ADDLGID-- 564
Query: 1259 LIESDE 1264
I+SDE
Sbjct: 565 -IDSDE 569
Score = 274 bits (701), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 176/523 (33%), Positives = 273/523 (52%), Gaps = 123/523 (23%)
Query: 148 VQMAEW---VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
+ + EW KF++ TI++ L GF PT IQ+ +P AL DI+G A TGSGKTL
Sbjct: 66 IDLPEWTNLAKFSL--TILQGLQSLGFTKPTAIQAKAIPYAL-ENADIMGKASTGSGKTL 122
Query: 205 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264
A+GIPIL E +++ +++S+ T +NK ALI
Sbjct: 123 AYGIPIL------------------------ENLIKTAKKDSSQTDGI----KNKPIALI 154
Query: 265 LAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPG 318
PTRELA QV H+ + K +P + + GG+S +KQ R+L + I++ATPG
Sbjct: 155 FTPTRELAQQVTKHLQNISQLFLKNSPYAILSLTGGLSIQKQERLLKYDNSGKIVIATPG 214
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
R E ++ + + +I+ LV+DE DR+++ GHF E + IL + Q R+
Sbjct: 215 RFLELLEKNNDLIERFCQIDTLVLDEADRLLQDGHFDEFEKILKYL-----GQKRK---- 265
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
ELK + + +Q QT ++SAT +
Sbjct: 266 -----ELK-------LKKANQYWQTMIYSATFS--------------------------- 286
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
+DL +K+ + + KI +E ++ L++ + +
Sbjct: 287 -------------IDLFDKLANSSWKSNKKIKQYENEMETVLHHLM-------------N 320
Query: 499 LLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
++ +S P I+D+ I+ + ES I C E+D Y YYFI +PG TL+FCN+I SV
Sbjct: 321 KIHFQSKPIIIDMNPDQKISSQIKESLIECAPTERDLYCYYFITMYPGSTLIFCNAIESV 380
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ--------NNSILLATDVAARGLD 609
K+L+ +L +LK S +H+SM Q+ RLKNL++++ Q ++L+A+DVAARGLD
Sbjct: 381 KKLSAMLNILKISSFQIHSSMTQKNRLKNLEKYQQQALVNTPLGKPTVLIASDVAARGLD 440
Query: 610 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
IP I+HVIHYH+PR++++YIHRSGRTARA+NEG++V++ E
Sbjct: 441 IPDIKHVIHYHLPRSADVYIHRSGRTARADNEGVSVMVCSPQE 483
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 19/114 (16%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PL------------YIKMFNSLEKKVDLPD 1283
D ++HRSGRTARA+NEG+++++ E PL K F + + + +P
Sbjct: 457 DVYIHRSGRTARADNEGVSVMVCSPQEAMGPLRKLRKVLADKSGSSKSFKNKKWQKTVPL 516
Query: 1284 FPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLEKAAKDMDIIIDDE 1334
PI+ ++S +++R LA + + S ++K+ DNW++KAA D+ I ID +
Sbjct: 517 LPIEIDIVSQLRERSKLASELADHDMASSSLRKD--DNWMKKAADDLGIDIDSD 568
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 24/144 (16%)
Query: 1356 ALILAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMSTEKQLRIL--NKCPHILVA 1409
ALI PTRELA QV H+ + K +P + + GG+S +KQ R+L + I++A
Sbjct: 152 ALIFTPTRELAQQVTKHLQNISQLFLKNSPYAILSLTGGLSIQKQERLLKYDNSGKIVIA 211
Query: 1410 TPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENAL 1469
TPG + +E LE + ++ +E+ + +++D+ + + + E
Sbjct: 212 TPG----------RFLELLE------KNNDLIERFCQIDTLVLDEADRLLQDGHFDEFEK 255
Query: 1470 MSKALVSKRKELQSLLGKSVQSYQ 1493
+ K L KRKEL+ L K+ Q +Q
Sbjct: 256 ILKYLGQKRKELK--LKKANQYWQ 277
>gi|225561194|gb|EEH09475.1| ATP-dependent RNA helicase MAK5 [Ajellomyces capsulatus G186AR]
Length = 771
Score = 296 bits (757), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 198/530 (37%), Positives = 280/530 (52%), Gaps = 71/530 (13%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
E LE + +E V ++ W +I I +L + F PT IQ+ +P + + D+V
Sbjct: 173 EALEDEVDGDE---VDVSRWDPLDISAEIQTSLSKLRFAKPTPIQTACIP-LIASGHDVV 228
Query: 811 GAAETGSGKTLAFGIPILTGIV-NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869
G A TGSGKTLAFGIPIL + N+ E P + N E
Sbjct: 229 GKASTGSGKTLAFGIPILEYYLKNRCEEPVQH-----------------------NHGEL 265
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKC 926
K ALIL+PTRELA Q+ HI P ++A + GG+S +KQ R+L
Sbjct: 266 SSKYP---IALILSPTRELAHQLSKHITALCTNAPNINARIALLTGGLSVQKQQRVLANA 322
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-------- 978
I++ TPGRLW+ I GH L + I +LVIDE DR++ GHF E++ IL
Sbjct: 323 -DIVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRLLSEGHFKEVEEILTALDRKEI 381
Query: 979 -DRVTMTETSQ-------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030
D+VT S+ PRQT VFSAT L+ L KG+ + S++ L
Sbjct: 382 HDKVTADSESEDDASKVSPRQTLVFSATFHKGLQQKLA-GKGRYFDGDLLDDKQSMEYLL 440
Query: 1031 DLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSI 1087
LN + PK +D+ + + L E + C EKD YLY +L HP RTLVF NSI
Sbjct: 441 KKLNFREDRPKFIDVNPVAQMAENLKEGLVECPAMEKDLYLYTLMLYHPQHRTLVFTNSI 500
Query: 1088 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIP 1144
S+V+RLT L L L LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI
Sbjct: 501 SAVRRLTVFLQNLNLPALALHSSMAQKARLRSVERFSSPTADPSSILVATDVAARGLDIK 560
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------- 1197
GI+ +IHYHVPRT++ Y+HRSGRTARA+ G +++L +EI ++ +
Sbjct: 561 GIDLIIHYHVPRTADTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHASSTTSS 620
Query: 1198 -----KKVDLPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
K++ L +D V++ ++ R+ LAK I + +K K + ++WL
Sbjct: 621 SSSVTKRLPLHSVDLDRRVIARVRPRVALAKKITNHTLAKEKLSSENDWL 670
Score = 267 bits (683), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 191/536 (35%), Positives = 258/536 (48%), Gaps = 122/536 (22%)
Query: 134 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
E LE + +E V ++ W +I I +L + F PT IQ+ +P + + D+V
Sbjct: 173 EALEDEVDGDE---VDVSRWDPLDISAEIQTSLSKLRFAKPTPIQTACIP-LIASGHDVV 228
Query: 194 GAAETGSGKTLAFGIPILTGIV-NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252
G A TGSGKTLAFGIPIL + N+ E P + N E
Sbjct: 229 GKASTGSGKTLAFGIPILEYYLKNRCEEPVQH-----------------------NHGEL 265
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKC 309
K ALIL+PTRELA Q+ HI P ++A + GG+S +KQ R+L
Sbjct: 266 SSKYP---IALILSPTRELAHQLSKHITALCTNAPNINARIALLTGGLSVQKQQRVLANA 322
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
I++ TPGRLW+ I GH L + I +LVIDE DR++ GHF E++ IL T
Sbjct: 323 -DIVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRLLSEGHFKEVEEIL-------T 374
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTETSQ-------PRQTFVFSATLTHSLKNSLNLKK 422
+ R K I D+VT S+ PRQT VFSAT L+ L K
Sbjct: 375 ALDR------------KEIHDKVTADSESEDDASKVSPRQTLVFSATFHKGLQQKL-AGK 421
Query: 423 GQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480
G+ + S++ L LN + PK +D+ + + L E + C EKD YL
Sbjct: 422 GRYFDGDLLDDKQSMEYLLKKLNFREDRPKFIDVNPVAQMAENLKEGLVECPAMEKDLYL 481
Query: 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540
Y +L HP
Sbjct: 482 YTLMLYHP---------------------------------------------------- 489
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSI 597
QH RTLVF NSIS+V+RLT L L L LH+SM Q+ RL++++RF +SI
Sbjct: 490 -QH--RTLVFTNSISAVRRLTVFLQNLNLPALALHSSMAQKARLRSVERFSSPTADPSSI 546
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
L+ATDVAARGLDI GI+ +IHYHVPRT++ Y+HRSGRTARA+ G +++L +EI
Sbjct: 547 LVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRSGRTARASASGKSILLCAPEEI 602
Score = 50.4 bits (119), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------------KKVDLPDFP 1285
D ++HRSGRTARA+ G +++L +EI ++ + K++ L
Sbjct: 575 DTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHASSTTSSSSSVTKRLPLHSVD 634
Query: 1286 IDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDE 1334
+D V++ ++ R+ LAK I + +K K + ++WL AA D+ + D E
Sbjct: 635 LDRRVIARVRPRVALAKKITNHTLAKEKLSSENDWLRSAADDLGVDYDSE 684
Score = 49.3 bits (116), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 272 ALILSPTRELAHQLSKHITALCTNAPNINARIALLTGGLSVQKQQRVLANA-DIVIGTPG 330
Query: 1413 AL 1414
L
Sbjct: 331 RL 332
>gi|239611412|gb|EEQ88399.1| ATP-dependent RNA helicase MAK5 [Ajellomyces dermatitidis ER-3]
Length = 772
Score = 295 bits (756), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 194/520 (37%), Positives = 276/520 (53%), Gaps = 75/520 (14%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V ++ W +I I +L + F PT IQS +P A+ A D+VG A TGSGKTLAFG
Sbjct: 185 VDVSAWGPLDISAEIQTSLSKLKFAKPTPIQSACIP-AIAAGHDVVGKASTGSGKTLAFG 243
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPIL E LE +E + + ++ ALIL+P
Sbjct: 244 IPIL------------------------EYYLETRHDEPSQQHKDLESVGKDPIALILSP 279
Query: 885 TRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
TRELA Q+ HI P ++A + GG+S +KQ R+L I+V TPGRLW+ I
Sbjct: 280 TRELAHQLAKHITALCTNAPNINARIALLTGGLSVQKQQRLLANA-DIVVGTPGRLWDVI 338
Query: 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS----QP-------- 989
GH L I +LV+DE DR++ GHF E++ I+ + + ET+ +P
Sbjct: 339 STGHGLLRRFQNIKFLVVDEADRLLSEGHFKEVEEIVTALDLKETNDGIEEPASHSESTD 398
Query: 990 -------RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-----PSIKRLQDLLNIKS 1037
RQT VFSAT L+ L G+S+ GD S++ L LN
Sbjct: 399 DASKAPRRQTLVFSATFHKGLQQKL---AGKSR---FFDGDLLDNKQSMEYLLKKLNFSE 452
Query: 1038 --PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLT 1094
PK +D+ + + L E + C EKD YLY +L HP RTLVF NSIS+V+RLT
Sbjct: 453 DKPKFIDVNPVAQMAENLKEGLVECPAMEKDLYLYTLMLYHPKHRTLVFTNSISAVRRLT 512
Query: 1095 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIH 1151
L L L LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI GI+ +IH
Sbjct: 513 AFLQNLNLPALALHSSMAQKARLRSVERFSSPTADPSSILVATDVAARGLDIKGIDLIIH 572
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE---------KKVDL 1202
YHVPRT++ Y+HRSGRTARA+ G +++L +EI ++ + K++ L
Sbjct: 573 YHVPRTADTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHTSATSSSSSKRLPL 632
Query: 1203 PDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
+D V++ ++ R+ L+K I ++ +K K + D+WL
Sbjct: 633 HSVDLDRRVIARVRPRVTLSKKITDHALAKEKLSSEDDWL 672
Score = 240 bits (613), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 176/526 (33%), Positives = 244/526 (46%), Gaps = 123/526 (23%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V ++ W +I I +L + F PT IQS +P A+ A D+VG A TGSGKTLAFG
Sbjct: 185 VDVSAWGPLDISAEIQTSLSKLKFAKPTPIQSACIP-AIAAGHDVVGKASTGSGKTLAFG 243
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IPIL E LE +E + + ++ ALIL+P
Sbjct: 244 IPIL------------------------EYYLETRHDEPSQQHKDLESVGKDPIALILSP 279
Query: 268 TRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 324
TRELA Q+ HI P ++A + GG+S +KQ R+L I+V TPGRLW+ I
Sbjct: 280 TRELAHQLAKHITALCTNAPNINARIALLTGGLSVQKQQRLLANA-DIVVGTPGRLWDVI 338
Query: 325 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
GH L I +LV+DE DR++ GHF E++ I+ + + ET+
Sbjct: 339 STGHGLLRRFQNIKFLVVDEADRLLSEGHFKEVEEIVTALDLKETND------------- 385
Query: 385 LKNILDRVTMTETSQP------RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD---- 434
I + + +E++ RQT VFSAT L+ L G+S + GD
Sbjct: 386 --GIEEPASHSESTDDASKAPRRQTLVFSATFHKGLQQKL---AGKS---RFFDGDLLDN 437
Query: 435 -PSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GR 490
S++ L LN PK +D+ + + L E + C EKD YLY +L HP R
Sbjct: 438 KQSMEYLLKKLNFSEDKPKFIDVNPVAQMAENLKEGLVECPAMEKDLYLYTLMLYHPKHR 497
Query: 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550
TL T I + LT
Sbjct: 498 TLV----------------FTNSISAVRRLT----------------------------- 512
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARG 607
L L L LH+SM Q+ RL++++RF +SIL+ATDVAARG
Sbjct: 513 -----------AFLQNLNLPALALHSSMAQKARLRSVERFSSPTADPSSILVATDVAARG 561
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LDI GI+ +IHYHVPRT++ Y+HRSGRTARA+ G +++L +EI
Sbjct: 562 LDIKGIDLIIHYHVPRTADTYVHRSGRTARASASGKSILLCAPEEI 607
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE---------KKVDLPDFPIDE 1288
D ++HRSGRTARA+ G +++L +EI ++ + K++ L +D
Sbjct: 580 DTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHTSATSSSSSKRLPLHSVDLDR 639
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
V++ ++ R+ L+K I ++ +K K + D+WL AA+D+ + D E +
Sbjct: 640 RVIARVRPRVTLSKKITDHALAKEKLSSEDDWLRSAAEDLGVDYDSEEFAE 690
Score = 49.7 bits (117), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI P ++A + GG+S +KQ R+L I+V TPG
Sbjct: 274 ALILSPTRELAHQLAKHITALCTNAPNINARIALLTGGLSVQKQQRLLANA-DIVVGTPG 332
Query: 1413 AL 1414
L
Sbjct: 333 RL 334
>gi|378731664|gb|EHY58123.1| hypothetical protein HMPREF1120_06141 [Exophiala dermatitidis
NIH/UT8656]
Length = 733
Score = 295 bits (756), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 197/533 (36%), Positives = 288/533 (54%), Gaps = 60/533 (11%)
Query: 738 KKKKKQTYTSANKEL-LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQS 796
KK K Q + +L +V + +D ++ W + + L + GF PT IQ
Sbjct: 139 KKSKSQQEDDIDADLGFDVLPDSTDDGKADVSAWKDLGLSPITLSQLSRLGFSNPTPIQK 198
Query: 797 MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 856
+P +L D++G A TGSGKTLAFGIPI + TE ++G + A
Sbjct: 199 AAVP-VILQGHDVIGKAVTGSGKTLAFGIPIFEAWL-----ATE----NAGFKGPA---- 244
Query: 857 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGM 914
KT++ L ALILAPTRELA+Q+ H+ L G +V V GG+
Sbjct: 245 ---------------KTKDSLLALILAPTRELALQLNRHLNELCIGLENAPRVCAVTGGL 289
Query: 915 STEKQLRILNKCPHILVATPGRLWEFIQLGHFH-----LTE-LYKINYLVIDETDRMIES 968
S KQ R L+ I+VATPGRLWE + + L E L KI +LV+DE DR++
Sbjct: 290 SVYKQQRQLSTA-DIVVATPGRLWEVMNDSATNYDTDALAERLKKIQFLVVDEADRLLSE 348
Query: 969 GHFPELKNILDRV-------------TMTETSQPRQTFVFSATLTHSLKNSLNLK--KGQ 1013
GHF E+++ILD + + T RQT VFSAT L+ L K G
Sbjct: 349 GHFKEVESILDALDREVIDEDAPEAPSKESTKSHRQTLVFSATFHKGLQKKLTSKNKSGW 408
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
+S ++ S++ L L+ + P VD+ + L+ES + C +KD YLY
Sbjct: 409 RQSTELLDNQQSMEYLLRKLSFREEKPTFVDVNPASQMASALSESIVECPAKKKDLYLYA 468
Query: 1072 FILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+LQ+ +TLVF NSIS+V+RLT LL LK + LH++M Q+ RL++L++F Q ++
Sbjct: 469 LLLQNTTAKTLVFTNSISAVRRLTSLLQTLKQPAVGLHSTMPQKSRLRSLEKFASQR-TV 527
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
++ATDVAARGLDI GI+ VIHYHVPRT+++Y+HRSGRTARA + G +++L +E+
Sbjct: 528 MVATDVAARGLDIKGIDLVIHYHVPRTADMYVHRSGRTARAESSGRSIMLCSPEEVAGVT 587
Query: 1191 KMFNSLEKKVDLPD-FPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
++ + K P+ ID +L ++ R+ LA+ I + ++K K D WL
Sbjct: 588 RLIIEVHKSAKAPETMEIDGRLLKRLEDRVVLAQKITDATQAKEKAASKDEWL 640
Score = 261 bits (668), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 196/566 (34%), Positives = 280/566 (49%), Gaps = 108/566 (19%)
Query: 121 KKKKKQTYTSANKEL-LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQS 179
KK K Q + +L +V + +D ++ W + + L + GF PT IQ
Sbjct: 139 KKSKSQQEDDIDADLGFDVLPDSTDDGKADVSAWKDLGLSPITLSQLSRLGFSNPTPIQK 198
Query: 180 MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 239
+P +L D++G A TGSGKTLAFGIPI + TE ++G + A
Sbjct: 199 AAVP-VILQGHDVIGKAVTGSGKTLAFGIPIFEAWL-----ATE----NAGFKGPA---- 244
Query: 240 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGM 297
KT++ L ALILAPTRELA+Q+ H+ L G +V V GG+
Sbjct: 245 ---------------KTKDSLLALILAPTRELALQLNRHLNELCIGLENAPRVCAVTGGL 289
Query: 298 STEKQLRILNKCPHILVATPGRLWEFIQLGHFH-----LTE-LYKINYLVIDETDRMIES 351
S KQ R L+ I+VATPGRLWE + + L E L KI +LV+DE DR++
Sbjct: 290 SVYKQQRQLSTA-DIVVATPGRLWEVMNDSATNYDTDALAERLKKIQFLVVDEADRLLSE 348
Query: 352 GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
GHF E+++ILD + R+ + E PE + T RQT VFSAT
Sbjct: 349 GHFKEVESILDALD-------REVIDEDA--PEAP------SKESTKSHRQTLVFSAT-- 391
Query: 412 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471
KG K K SK ++ +LL
Sbjct: 392 --------FHKGLQK-KLTSKNKSGWRQSTELL--------------------------- 415
Query: 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 531
D + S Y R L + P VD+ + L+ES + C +
Sbjct: 416 --DNQQSMEYLL------RKLS------FREEKPTFVDVNPASQMASALSESIVECPAKK 461
Query: 532 KDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 590
KD YLY +LQ+ +TLVF NSIS+V+RLT LL LK + LH++M Q+ RL++L++F
Sbjct: 462 KDLYLYALLLQNTTAKTLVFTNSISAVRRLTSLLQTLKQPAVGLHSTMPQKSRLRSLEKF 521
Query: 591 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIES 650
Q ++++ATDVAARGLDI GI+ VIHYHVPRT+++Y+HRSGRTARA + G +++L
Sbjct: 522 ASQR-TVMVATDVAARGLDIKGIDLVIHYHVPRTADMYVHRSGRTARAESSGRSIMLCSP 580
Query: 651 DEIPLKTKFNLQEEENNEEEERAEAD 676
+E+ T+ ++ ++ + E E D
Sbjct: 581 EEVAGVTRLIIEVHKSAKAPETMEID 606
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD-FPIDESVLSLIKK 1296
D ++HRSGRTARA + G +++L +E+ ++ + K P+ ID +L ++
Sbjct: 556 DMYVHRSGRTARAESSGRSIMLCSPEEVAGVTRLIIEVHKSAKAPETMEIDGRLLKRLED 615
Query: 1297 RIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
R+ LA+ I + ++K K D WL+ AA+++ + D E
Sbjct: 616 RVVLAQKITDATQAKEKAASKDEWLKSAAEELGVDYDSEEF 656
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
ALILAPTRELA+Q+ H+ L G +V V GG+S KQ R L+ I+VATPG
Sbjct: 252 ALILAPTRELALQLNRHLNELCIGLENAPRVCAVTGGLSVYKQQRQLSTA-DIVVATPGR 310
Query: 1414 L 1414
L
Sbjct: 311 L 311
>gi|261205266|ref|XP_002627370.1| ATP-dependent RNA helicase MAK5 [Ajellomyces dermatitidis SLH14081]
gi|239592429|gb|EEQ75010.1| ATP-dependent RNA helicase MAK5 [Ajellomyces dermatitidis SLH14081]
Length = 772
Score = 295 bits (756), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 194/520 (37%), Positives = 276/520 (53%), Gaps = 75/520 (14%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V ++ W +I I +L + F PT IQS +P A+ A D+VG A TGSGKTLAFG
Sbjct: 185 VDVSAWGPLDISAEIQTSLSKLKFAKPTPIQSACIP-AIAAGHDVVGKASTGSGKTLAFG 243
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPIL E LE +E + + + ALIL+P
Sbjct: 244 IPIL------------------------EYYLETRHDEPSQQHKDRESAGKDPIALILSP 279
Query: 885 TRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
TRELA Q+ HI P ++A + GG+S +KQ R+L I+V TPGRLW+ I
Sbjct: 280 TRELAHQLAKHITALCTNAPNINARIALLTGGLSVQKQQRLLANA-DIVVGTPGRLWDVI 338
Query: 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS----QP-------- 989
GH L I +LV+DE DR++ GHF E++ I+ + + ET+ +P
Sbjct: 339 STGHGLLRRFQNIKFLVVDEADRLLSEGHFKEVEEIVTALDLKETNDGIEEPASHSESTD 398
Query: 990 -------RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-----PSIKRLQDLLNIKS 1037
RQT VFSAT L+ L G+S+ GD S++ L LN +
Sbjct: 399 DASKAPRRQTLVFSATFHKGLQQKL---AGKSR---FFDGDLLDNKQSMEYLLKKLNFRE 452
Query: 1038 --PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLT 1094
PK +D+ + + L E + C EKD YLY +L HP RTLVF NSIS+V+RLT
Sbjct: 453 DKPKFIDVNPVAQMAENLKEGLVECPAMEKDLYLYTLMLYHPKHRTLVFTNSISAVRRLT 512
Query: 1095 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIH 1151
L L L LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI GI+ +IH
Sbjct: 513 AFLQNLNLPALALHSSMAQKARLRSVERFSSPTADPSSILVATDVAARGLDIKGIDLIIH 572
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE---------KKVDL 1202
YHVPRT++ Y+HRSGRTARA+ G +++L +EI ++ + K++ L
Sbjct: 573 YHVPRTADTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHTSATSSSSSKRLPL 632
Query: 1203 PDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
+D V++ ++ R+ L+K I ++ +K K + D+WL
Sbjct: 633 HSVDLDRRVIARVRPRVTLSKKITDHALAKEKLSSEDDWL 672
Score = 240 bits (612), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 178/521 (34%), Positives = 243/521 (46%), Gaps = 113/521 (21%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V ++ W +I I +L + F PT IQS +P A+ A D+VG A TGSGKTLAFG
Sbjct: 185 VDVSAWGPLDISAEIQTSLSKLKFAKPTPIQSACIP-AIAAGHDVVGKASTGSGKTLAFG 243
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IPIL E LE +E + + + ALIL+P
Sbjct: 244 IPIL------------------------EYYLETRHDEPSQQHKDRESAGKDPIALILSP 279
Query: 268 TRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 324
TRELA Q+ HI P ++A + GG+S +KQ R+L I+V TPGRLW+ I
Sbjct: 280 TRELAHQLAKHITALCTNAPNINARIALLTGGLSVQKQQRLLANA-DIVVGTPGRLWDVI 338
Query: 325 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
GH L I +LV+DE DR++ GHF E++ I+ + + ET+ + E E
Sbjct: 339 STGHGLLRRFQNIKFLVVDEADRLLSEGHFKEVEEIVTALDLKETN---DGIEEPASHSE 395
Query: 385 LKNILDRVTMTETSQP-RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-----PSIK 438
T + P RQT VFSAT L+ L G+S + GD S++
Sbjct: 396 -------STDDASKAPRRQTLVFSATFHKGLQQKL---AGKS---RFFDGDLLDNKQSME 442
Query: 439 RLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLCEE 495
L LN + PK +D+ + + L E + C EKD YLY +L HP RTL
Sbjct: 443 YLLKKLNFREDKPKFIDVNPVAQMAENLKEGLVECPAMEKDLYLYTLMLYHPKHRTLV-- 500
Query: 496 IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555
T I + LT
Sbjct: 501 --------------FTNSISAVRRLT---------------------------------- 512
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPG 612
L L L LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI G
Sbjct: 513 ------AFLQNLNLPALALHSSMAQKARLRSVERFSSPTADPSSILVATDVAARGLDIKG 566
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
I+ +IHYHVPRT++ Y+HRSGRTARA+ G +++L +EI
Sbjct: 567 IDLIIHYHVPRTADTYVHRSGRTARASASGKSILLCAPEEI 607
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE---------KKVDLPDFPIDE 1288
D ++HRSGRTARA+ G +++L +EI ++ + K++ L +D
Sbjct: 580 DTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHTSATSSSSSKRLPLHSVDLDR 639
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
V++ ++ R+ L+K I ++ +K K + D+WL AA+D+ + D E +
Sbjct: 640 RVIARVRPRVTLSKKITDHALAKEKLSSEDDWLRSAAEDLGVDYDSEEFAE 690
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI P ++A + GG+S +KQ R+L I+V TPG
Sbjct: 274 ALILSPTRELAHQLAKHITALCTNAPNINARIALLTGGLSVQKQQRLLANA-DIVVGTPG 332
Query: 1413 AL 1414
L
Sbjct: 333 RL 334
>gi|240277958|gb|EER41465.1| ATP-dependent RNA helicase MAK5 [Ajellomyces capsulatus H143]
Length = 723
Score = 295 bits (755), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 202/550 (36%), Positives = 290/550 (52%), Gaps = 74/550 (13%)
Query: 734 KLKQKKK---KKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKT 790
+++ KKK K + + E LE + +E V ++ W +I I +L + F
Sbjct: 101 EIQSKKKPAPKHDIQSGISFEALEDEVDGDE---VDVSRWDPLDISAEIQTSLSKLRFAK 157
Query: 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV-NKLENPTEEDENDSGLE 849
PT IQ+ +P + + D+VG A TGSGKTLAFGIPIL + N+ E P + ND L
Sbjct: 158 PTPIQTACIP-LIASGHDVVGKASTGSGKTLAFGIPILEYYLKNRREEPVQH--NDGELS 214
Query: 850 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP---VK 906
+ ALIL+PTRELA Q+ HI P +
Sbjct: 215 SKYP------------------------IALILSPTRELAHQLSKHITALCTNAPNINAR 250
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966
+A + GG+S +KQ R+L I++ TPGRLW+ I GH L + I +LVIDE DR++
Sbjct: 251 IALLTGGLSVQKQQRVLANAD-IVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRLL 309
Query: 967 ESGHFPELKNIL---------DRVTMTETSQ-------PRQTFVFSATLTHSLKNSLNLK 1010
GHF E++ IL D+VT S+ PRQT VFSAT L+ L
Sbjct: 310 SEGHFKEVEEILTALDRKEIHDKVTADSESEDDASKVSPRQTLVFSATFHKGLQQKLA-G 368
Query: 1011 KGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KG+ + S++ L LN + PK +D+ + + L E + C EKD Y
Sbjct: 369 KGRYFDGDLLDDKQSMEYLLKKLNFREDRPKFIDVNPVAQMAENLKEGLVECPAMEKDLY 428
Query: 1069 LYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
LY +L HP RTLVF NSIS+V+RLT L L L LH+SM Q+ RL++++RF
Sbjct: 429 LYTLMLYHPQHRTLVFTNSISAVRRLTVFLQNLNLPALALHSSMAQKARLRSVERFSSPT 488
Query: 1128 ---NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+SIL+ATDVAARGLDI GI+ +IHYHVPRT++ Y+HRSGRTARA+ G +++L +
Sbjct: 489 ADPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRSGRTARASASGKSILLCAPE 548
Query: 1185 EIPLYIKMFNSLE------------KKVDLPDFPIDESVLSLIKKRIDLAKSI-EYLESK 1231
EI ++ + K++ L +D V++ ++ R+ LAK I + +K
Sbjct: 549 EIVGVARLAAKVHASSTTSSSSSVTKRLPLHSVDLDRRVIARVRHRVALAKKITNHTLAK 608
Query: 1232 IKKNRPDNWL 1241
K + ++WL
Sbjct: 609 EKLSSENDWL 618
Score = 267 bits (682), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 195/556 (35%), Positives = 268/556 (48%), Gaps = 125/556 (22%)
Query: 117 KLKQKKK---KKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKT 173
+++ KKK K + + E LE + +E V ++ W +I I +L + F
Sbjct: 101 EIQSKKKPAPKHDIQSGISFEALEDEVDGDE---VDVSRWDPLDISAEIQTSLSKLRFAK 157
Query: 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV-NKLENPTEEDENDSGLE 232
PT IQ+ +P + + D+VG A TGSGKTLAFGIPIL + N+ E P + ND L
Sbjct: 158 PTPIQTACIP-LIASGHDVVGKASTGSGKTLAFGIPILEYYLKNRREEPVQH--NDGELS 214
Query: 233 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP---VK 289
+ ALIL+PTRELA Q+ HI P +
Sbjct: 215 SKYP------------------------IALILSPTRELAHQLSKHITALCTNAPNINAR 250
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349
+A + GG+S +KQ R+L I++ TPGRLW+ I GH L + I +LVIDE DR++
Sbjct: 251 IALLTGGLSVQKQQRVLANAD-IVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRLL 309
Query: 350 ESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ-------PRQ 402
GHF E++ IL T+ R K I D+VT S+ PRQ
Sbjct: 310 SEGHFKEVEEIL-------TALDR------------KEIHDKVTADSESEDDASKVSPRQ 350
Query: 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGI 460
T VFSAT L+ L KG+ + S++ L LN + PK +D+ +
Sbjct: 351 TLVFSATFHKGLQQKLA-GKGRYFDGDLLDDKQSMEYLLKKLNFREDRPKFIDVNPVAQM 409
Query: 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTL 520
+ L E + C EKD YLY +L HP
Sbjct: 410 AENLKEGLVECPAMEKDLYLYTLMLYHP-------------------------------- 437
Query: 521 TESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 580
QH RTLVF NSIS+V+RLT L L L LH+SM Q
Sbjct: 438 ---------------------QH--RTLVFTNSISAVRRLTVFLQNLNLPALALHSSMAQ 474
Query: 581 RQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+ RL++++RF +SIL+ATDVAARGLDI GI+ +IHYHVPRT++ Y+HRSGRTAR
Sbjct: 475 KARLRSVERFSSPTADPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRSGRTAR 534
Query: 638 ANNEGLTVVLIESDEI 653
A+ G +++L +EI
Sbjct: 535 ASASGKSILLCAPEEI 550
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------------KKVDLPDFP 1285
D ++HRSGRTARA+ G +++L +EI ++ + K++ L
Sbjct: 523 DTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHASSTTSSSSSVTKRLPLHSVD 582
Query: 1286 IDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+D V++ ++ R+ LAK I + +K K + ++WL AA D+ + D E +
Sbjct: 583 LDRRVIARVRHRVALAKKITNHTLAKEKLSSENDWLRSAADDLGVDYDSEEFAE 636
Score = 49.3 bits (116), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 220 ALILSPTRELAHQLSKHITALCTNAPNINARIALLTGGLSVQKQQRVLANAD-IVIGTPG 278
Query: 1413 AL 1414
L
Sbjct: 279 RL 280
>gi|85086234|ref|XP_957656.1| hypothetical protein NCU04041 [Neurospora crassa OR74A]
gi|74662508|sp|Q7RZH4.1|MAK5_NEUCR RecName: Full=ATP-dependent RNA helicase mak-5
gi|28918750|gb|EAA28420.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|39979232|emb|CAE85602.1| related to ATP-dependent RNA helicase [Neurospora crassa]
Length = 805
Score = 295 bits (755), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 192/545 (35%), Positives = 289/545 (53%), Gaps = 100/545 (18%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+ M+EWV ++ +I ++ + F PT IQS +P ++A D++G A TGSGKTLAFG
Sbjct: 206 IDMSEWVPLDLSPRMISSIAKLRFSKPTVIQSKAIPE-IMAGHDVIGKASTGSGKTLAFG 264
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IP++ ++ +A T + K+ R ALIL+P
Sbjct: 265 IPVIESWLS-----------------------------AAETRKQNKEERKGATALILSP 295
Query: 885 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942
TRELA Q+++H+ L G T + V+GGM+ +KQ R L + I++ATPGR+WE +
Sbjct: 296 TRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQL-QVADIVIATPGRMWEVMS 354
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQP---------- 989
+ L L I++LV+DE DR+++ GHF E + I LDR + E ++
Sbjct: 355 SDNSVLASLRNISFLVLDEADRLLKDGHFKEAEEIFKALDRPPVEENNEDQKMGGTDEEG 414
Query: 990 ---------------------RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 1028
RQT +FSAT +L+ L G+SK K S D ++
Sbjct: 415 QEEEEEDSEEEEEEEEEHVNKRQTLIFSATFNKNLQQKL---AGKSKFKATSTQD--MEY 469
Query: 1029 LQDLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNS 1086
L LN + +PK VD + + L E I+C EKD YLY ++ P R LVF NS
Sbjct: 470 LLQKLNFRETPKFVDANPVHQMAENLKEGLIMCGDMEKDLYLYATLMLQPTRRALVFTNS 529
Query: 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR--------DQNNSILLATDVAA 1138
++SV+RLT LL L PLH+ M Q+ RL+++DRF+ + + +IL+ATDVAA
Sbjct: 530 VNSVRRLTPLLENLNLPAFPLHSGMIQQARLRSIDRFKANEGAKKKNGSAAILVATDVAA 589
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE-IP---LYIKMFN 1194
RGLDIP ++ VIHYHVPR +E Y+HRSGRTARA+N G +++L E +P L K+
Sbjct: 590 RGLDIPDVDLVIHYHVPRAAEDYVHRSGRTARASNSGTSILLCGPKEAVPTQRLVAKVHA 649
Query: 1195 SLEKKV-------------DLPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNW 1240
E K L ID +++ +++R+DLAK I + +++K + D+W
Sbjct: 650 QAEVKAGNSGNNTKKLVSSGLRTIDIDRRIVAKLRERVDLAKKIADAVQAKTMGGKEDDW 709
Query: 1241 LHRSG 1245
+ ++
Sbjct: 710 MKKAA 714
Score = 164 bits (416), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/352 (33%), Positives = 181/352 (51%), Gaps = 45/352 (12%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+ M+EWV ++ +I ++ + F PT IQS +P ++A D++G A TGSGKTLAFG
Sbjct: 206 IDMSEWVPLDLSPRMISSIAKLRFSKPTVIQSKAIPE-IMAGHDVIGKASTGSGKTLAFG 264
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IP++ ++ +A T + K+ R ALIL+P
Sbjct: 265 IPVIESWLS-----------------------------AAETRKQNKEERKGATALILSP 295
Query: 268 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 325
TRELA Q+++H+ L G T + V+GGM+ +KQ R L + I++ATPGR+WE +
Sbjct: 296 TRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQL-QVADIVIATPGRMWEVMS 354
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQPRQ---TMIES 379
+ L L I++LV+DE DR+++ GHF E + I LDR + E ++ ++ T E
Sbjct: 355 SDNSVLASLRNISFLVLDEADRLLKDGHFKEAEEIFKALDRPPVEENNEDQKMGGTDEEG 414
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
E + + E RQT +FSAT +L+ L G+SK K S D ++
Sbjct: 415 QEEEEEDSEEEEEEEEEHVNKRQTLIFSATFNKNLQQKL---AGKSKFKATSTQD--MEY 469
Query: 440 LQDLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
L LN + +PK VD + + L E I+C EKD YLY ++ P R
Sbjct: 470 LLQKLNFRETPKFVDANPVHQMAENLKEGLIMCGDMEKDLYLYATLMLQPTR 521
Score = 152 bits (385), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 10/158 (6%)
Query: 500 LNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSV 557
LN + +PK VD + + L E I+C EKD YLY ++ P R LVF NS++SV
Sbjct: 474 LNFRETPKFVDANPVHQMAENLKEGLIMCGDMEKDLYLYATLMLQPTRRALVFTNSVNSV 533
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR--------DQNNSILLATDVAARGLD 609
+RLT LL L PLH+ M Q+ RL+++DRF+ + + +IL+ATDVAARGLD
Sbjct: 534 RRLTPLLENLNLPAFPLHSGMIQQARLRSIDRFKANEGAKKKNGSAAILVATDVAARGLD 593
Query: 610 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
IP ++ VIHYHVPR +E Y+HRSGRTARA+N G +++L
Sbjct: 594 IPDVDLVIHYHVPRAAEDYVHRSGRTARASNSGTSILL 631
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 1351 RYSWDALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 1408
R ALIL+PTRELA Q+++H+ L G T + V+GGM+ +KQ R L + I++
Sbjct: 285 RKGATALILSPTRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQL-QVADIVI 343
Query: 1409 ATPGAL 1414
ATPG +
Sbjct: 344 ATPGRM 349
>gi|451996154|gb|EMD88621.1| hypothetical protein COCHEDRAFT_1181781 [Cochliobolus heterostrophus
C5]
Length = 742
Score = 295 bits (754), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 188/559 (33%), Positives = 300/559 (53%), Gaps = 67/559 (11%)
Query: 717 DQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIP 776
DQ ++EE + P + + ++ + Q ++ E + N D ++ W K ++
Sbjct: 121 DQDKESEEDEDKGPEGQG-EDEELEWQGFSDEEVETEAPTLATNGDDEEDVSAWAKLDLS 179
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E ++ AL + F PT IQ+ +P ++A +D++G A TGSGKTLAFGIPI+ + +
Sbjct: 180 EEMLGALAKLKFSEPTDIQASTIPE-IIAGRDVIGKASTGSGKTLAFGIPIIESYLTR-- 236
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-YALILAPTRELAIQVQNH 895
+A+ K T++K+ ALI+APTRELA Q+ H
Sbjct: 237 -------------------------RAAS-----KDTKDKVPLALIIAPTRELAHQINEH 266
Query: 896 ILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
++ G++ +A + GG+S +KQ R L K I+V TPGRLWE I G L +
Sbjct: 267 LVKLCAKGEFDSPYIASITGGLSVQKQRRQLEKA-DIVVGTPGRLWEVISSGQGLLAKFK 325
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVT----MTETSQP-------RQTFVFSATLTH 1001
+I +LV+DE DR++ GHF E+ +IL + + E ++P RQT VFSAT
Sbjct: 326 QIKFLVVDEADRLLSQGHFKEMDDILKVLEPDDEVDENAEPEETPEANRQTLVFSATFGK 385
Query: 1002 SLKNSL--NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 1059
L+ L K G + + + +K+L+ + PK +D + L E I
Sbjct: 386 DLQRKLAGKAKFGGDQMNQQQSMEYLLKKLR--FREEKPKFIDTNPTSQMASKLQEGLIE 443
Query: 1060 CKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
C EKD YLY ++ + R LVF NSIS+V+R+T LT L LPLH++M Q+ RL+
Sbjct: 444 CAGPEKDLYLYSLLMFYTKKRALVFTNSISAVRRITPFLTNLNLPALPLHSNMPQKARLR 503
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
+++RF+++ SIL+ATDVAARGLDIP +E VIHYH+PR ++ Y+HRSGRTARA+ G ++
Sbjct: 504 SIERFKERPGSILVATDVAARGLDIPKVELVIHYHLPRAADTYVHRSGRTARADASGASI 563
Query: 1179 VLIESDEIPLYIKMFNSLEKKVD-----------LPDFPIDESVLSLIKKRIDLAKSI-E 1226
++ +E+ ++ + + + ID ++S +K R ++K + +
Sbjct: 564 LICAPEEVAGVRRLIAKVHARAASAPKTKNTSFFIRTLDIDRRIVSRLKPRATISKRLAD 623
Query: 1227 YLESKIKKNRPDNWLHRSG 1245
+ +K KKN D+ L ++
Sbjct: 624 TVIAKEKKNSGDDVLRQAA 642
Score = 161 bits (407), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/355 (31%), Positives = 172/355 (48%), Gaps = 67/355 (18%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
+ N D ++ W K ++ E ++ AL + F PT IQ+ +P ++A +D++G A TGS
Sbjct: 161 ATNGDDEEDVSAWAKLDLSEEMLGALAKLKFSEPTDIQASTIPE-IIAGRDVIGKASTGS 219
Query: 201 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 260
GKTLAFGIPI+ + + +A+ K T++K+
Sbjct: 220 GKTLAFGIPIIESYLTR---------------------------RAAS-----KDTKDKV 247
Query: 261 -YALILAPTRELAIQVQNHILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
ALI+APTRELA Q+ H++ G++ +A + GG+S +KQ R L K I+V T
Sbjct: 248 PLALIIAPTRELAHQINEHLVKLCAKGEFDSPYIASITGGLSVQKQRRQLEKA-DIVVGT 306
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV----TMTETSQP 372
PGRLWE I G L + +I +LV+DE DR++ GHF E+ +IL + + E ++P
Sbjct: 307 PGRLWEVISSGQGLLAKFKQIKFLVVDEADRLLSQGHFKEMDDILKVLEPDDEVDENAEP 366
Query: 373 RQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL--NLKKGQSKSKKV 430
+T PE RQT VFSAT L+ L K G + +
Sbjct: 367 EET-------PEAN--------------RQTLVFSATFGKDLQRKLAGKAKFGGDQMNQQ 405
Query: 431 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 485
+ +K+L+ + PK +D + L E I C EKD YLY ++
Sbjct: 406 QSMEYLLKKLR--FREEKPKFIDTNPTSQMASKLQEGLIECAGPEKDLYLYSLLM 458
Score = 155 bits (392), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQL 563
PK +D + L E I C EKD YLY ++ + R LVF NSIS+V+R+T
Sbjct: 422 PKFIDTNPTSQMASKLQEGLIECAGPEKDLYLYSLLMFYTKKRALVFTNSISAVRRITPF 481
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
LT L LPLH++M Q+ RL++++RF+++ SIL+ATDVAARGLDIP +E VIHYH+PR
Sbjct: 482 LTNLNLPALPLHSNMPQKARLRSIERFKERPGSILVATDVAARGLDIPKVELVIHYHLPR 541
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEI 653
++ Y+HRSGRTARA+ G ++++ +E+
Sbjct: 542 AADTYVHRSGRTARADASGASILICAPEEV 571
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 20/147 (13%)
Query: 1356 ALILAPTRELAIQVQNHILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALI+APTRELA Q+ H++ G++ +A + GG+S +KQ R L K I+V TPG
Sbjct: 250 ALIIAPTRELAHQINEHLVKLCAKGEFDSPYIASITGGLSVQKQRRQLEKA-DIVVGTPG 308
Query: 1413 ALSLKRIDLAKSIEYLESKIKK------NRPDNWLEKA-AKDMDIIIDDENLIQPKANSR 1465
L ++ S + L +K K+ + D L + K+MD I+ +++P
Sbjct: 309 RL----WEVISSGQGLLAKFKQIKFLVVDEADRLLSQGHFKEMDDIL---KVLEPDDEVD 361
Query: 1466 ENALMSKALVSKRKEL--QSLLGKSVQ 1490
ENA + + R+ L + GK +Q
Sbjct: 362 ENAEPEETPEANRQTLVFSATFGKDLQ 388
Score = 46.2 bits (108), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-----------LPDFPI 1286
D ++HRSGRTARA+ G ++++ +E+ ++ + + + I
Sbjct: 544 DTYVHRSGRTARADASGASILICAPEEVAGVRRLIAKVHARAASAPKTKNTSFFIRTLDI 603
Query: 1287 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
D ++S +K R ++K + + + +K KKN D+ L +AA+D+ + D E
Sbjct: 604 DRRIVSRLKPRATISKRLADTVIAKEKKNSGDDVLRQAAEDLGVDYDSEEF 654
>gi|327348577|gb|EGE77434.1| ATP-dependent RNA helicase MAK5 [Ajellomyces dermatitidis ATCC 18188]
Length = 772
Score = 294 bits (753), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 194/520 (37%), Positives = 275/520 (52%), Gaps = 75/520 (14%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V ++ W +I I +L + F PT IQS +P A+ A D+VG A TGSGKTLAFG
Sbjct: 185 VDVSAWGPLDISAEIQTSLSKLKFAKPTPIQSACIP-AIAAGHDVVGKASTGSGKTLAFG 243
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPIL E LE +E + + + ALIL+P
Sbjct: 244 IPIL------------------------EYYLETRHDEPSQQHKDPESAGKDPIALILSP 279
Query: 885 TRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
TRELA Q+ HI P ++A + GG+S +KQ R+L I+V TPGRLW+ I
Sbjct: 280 TRELAHQLAKHITALCTNAPNINARIALLTGGLSVQKQQRLLANA-DIVVGTPGRLWDVI 338
Query: 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS----QP-------- 989
GH L I +LV+DE DR++ GHF E++ I+ + + ET+ +P
Sbjct: 339 STGHGLLRRFQNIKFLVVDEADRLLSEGHFKEVEEIVTALDLKETNDGIEEPASHSESTD 398
Query: 990 -------RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-----PSIKRLQDLLNIKS 1037
RQT VFSAT L+ L G+S+ GD S++ L LN
Sbjct: 399 DASKAPRRQTLVFSATFHKGLQQKL---AGKSR---FFDGDLLDNKQSMEYLLKKLNFSE 452
Query: 1038 --PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLT 1094
PK +D+ + + L E + C EKD YLY +L HP RTLVF NSIS+V+RLT
Sbjct: 453 DKPKFIDVNPVAQMAENLKEGLVECPAMEKDLYLYTLMLYHPKHRTLVFTNSISAVRRLT 512
Query: 1095 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIH 1151
L L L LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI GI+ +IH
Sbjct: 513 AFLQNLNLPALALHSSMAQKARLRSVERFSSPTADPSSILVATDVAARGLDIKGIDLIIH 572
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE---------KKVDL 1202
YHVPRT++ Y+HRSGRTARA+ G +++L +EI ++ + K++ L
Sbjct: 573 YHVPRTADTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHTSATSSSSSKRLPL 632
Query: 1203 PDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
+D V++ ++ R+ L+K I ++ +K K + D+WL
Sbjct: 633 HSVDLDRRVIARVRPRVTLSKKITDHALAKEKLSSEDDWL 672
Score = 239 bits (610), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 176/526 (33%), Positives = 243/526 (46%), Gaps = 123/526 (23%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V ++ W +I I +L + F PT IQS +P A+ A D+VG A TGSGKTLAFG
Sbjct: 185 VDVSAWGPLDISAEIQTSLSKLKFAKPTPIQSACIP-AIAAGHDVVGKASTGSGKTLAFG 243
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IPIL E LE +E + + + ALIL+P
Sbjct: 244 IPIL------------------------EYYLETRHDEPSQQHKDPESAGKDPIALILSP 279
Query: 268 TRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 324
TRELA Q+ HI P ++A + GG+S +KQ R+L I+V TPGRLW+ I
Sbjct: 280 TRELAHQLAKHITALCTNAPNINARIALLTGGLSVQKQQRLLANA-DIVVGTPGRLWDVI 338
Query: 325 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
GH L I +LV+DE DR++ GHF E++ I+ + + ET+
Sbjct: 339 STGHGLLRRFQNIKFLVVDEADRLLSEGHFKEVEEIVTALDLKETND------------- 385
Query: 385 LKNILDRVTMTETSQP------RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD---- 434
I + + +E++ RQT VFSAT L+ L G+S + GD
Sbjct: 386 --GIEEPASHSESTDDASKAPRRQTLVFSATFHKGLQQKL---AGKS---RFFDGDLLDN 437
Query: 435 -PSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GR 490
S++ L LN PK +D+ + + L E + C EKD YLY +L HP R
Sbjct: 438 KQSMEYLLKKLNFSEDKPKFIDVNPVAQMAENLKEGLVECPAMEKDLYLYTLMLYHPKHR 497
Query: 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550
TL T I + LT
Sbjct: 498 TLV----------------FTNSISAVRRLT----------------------------- 512
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARG 607
L L L LH+SM Q+ RL++++RF +SIL+ATDVAARG
Sbjct: 513 -----------AFLQNLNLPALALHSSMAQKARLRSVERFSSPTADPSSILVATDVAARG 561
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LDI GI+ +IHYHVPRT++ Y+HRSGRTARA+ G +++L +EI
Sbjct: 562 LDIKGIDLIIHYHVPRTADTYVHRSGRTARASASGKSILLCAPEEI 607
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE---------KKVDLPDFPIDE 1288
D ++HRSGRTARA+ G +++L +EI ++ + K++ L +D
Sbjct: 580 DTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHTSATSSSSSKRLPLHSVDLDR 639
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
V++ ++ R+ L+K I ++ +K K + D+WL AA+D+ + D E +
Sbjct: 640 RVIARVRPRVTLSKKITDHALAKEKLSSEDDWLRSAAEDLGVDYDSEEFAE 690
Score = 49.7 bits (117), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI P ++A + GG+S +KQ R+L I+V TPG
Sbjct: 274 ALILSPTRELAHQLAKHITALCTNAPNINARIALLTGGLSVQKQQRLLANA-DIVVGTPG 332
Query: 1413 AL 1414
L
Sbjct: 333 RL 334
>gi|212529054|ref|XP_002144684.1| ATP dependent RNA helicase, putative [Talaromyces marneffei ATCC
18224]
gi|210074082|gb|EEA28169.1| ATP dependent RNA helicase, putative [Talaromyces marneffei ATCC
18224]
Length = 770
Score = 294 bits (752), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 189/520 (36%), Positives = 280/520 (53%), Gaps = 66/520 (12%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+ ++ W + + + + F TP+ IQ V+P +LA D+VG A TGSGKTLAFG
Sbjct: 180 IDVSAWEALGLSPALQTGISKLKFSTPSTIQQAVIPE-VLAGHDVVGKASTGSGKTLAFG 238
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPIL +N + + +++ + KK ++ ALIL+P
Sbjct: 239 IPILEYYLNT-----------------------KGQRDTSKENKKKKKKESQPIALILSP 275
Query: 885 TRELAIQVQNHILDAGKYTPV---KVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
TRELA Q+ HI +TP ++A + GG++ +KQ R+LN I++ TPGR+WE +
Sbjct: 276 TRELAHQLAKHIGALNTHTPAANARIALLTGGLAIQKQQRLLNDA-DIVIGTPGRVWEIL 334
Query: 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM------------------ 983
G + + + YLV+DE DR++ GH+ EL+ ILD +
Sbjct: 335 SSGTGLIQRMSGVKYLVLDEADRLLSDGHYKELEEILDALDRKEDNDEADENSSNSEEED 394
Query: 984 ---TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--P 1038
E S RQT VFSAT L+ L+ KG+ S + S++ L L + P
Sbjct: 395 EQKAEASAARQTLVFSATFHKGLQQKLS-GKGKFMSSDLMNKTESMEYLLQKLKFREEKP 453
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLL 1097
K +D+ + + L E + C EKD YLY +L HPG R L+F NSISSV+RL+QLL
Sbjct: 454 KFIDVNPISQMAQGLKEGILECGAMEKDLYLYTLLLYHPGHRCLLFANSISSVRRLSQLL 513
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHV 1154
L L LH++M Q+ RL++++RF + +S+L+ATDVAARGLDI GI+ VIHYHV
Sbjct: 514 QNLGIPALALHSTMEQKARLRSVERFSSPDADPSSVLVATDVAARGLDIKGIDIVIHYHV 573
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD---------LPDF 1205
PRT+++Y+HRSGRTARA G ++++ DE+ ++ + + + L
Sbjct: 574 PRTADMYVHRSGRTARAGASGKSVLICAPDEVVGVARLVAKVHAQAEAGASTKRNPLESL 633
Query: 1206 PIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
+D V+S +K RI LAK I E +K K + DNWL +
Sbjct: 634 ELDRRVISRVKPRITLAKKITESNLAKEKISSEDNWLRNA 673
Score = 264 bits (674), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 210/644 (32%), Positives = 312/644 (48%), Gaps = 121/644 (18%)
Query: 19 GGVKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLK 78
G +K K KP K+ +K N EN EE ++A+K++ V KK+ +
Sbjct: 74 GQIKFKVAADKPTKSILKKTKTTNETPNENTEEWSGFSDAEKQE-------VKPHKKQKQ 126
Query: 79 RKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEV 138
K++ Q E S T D +P++ K +Q+ K K +S + L
Sbjct: 127 NKKSEQQKEKS-----TTD------------EKKPAATKQQQQPKIKADKSSEKIQSLPF 169
Query: 139 DT-SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 197
E+ + ++ W + + + + F TP+ IQ V+P +LA D+VG A
Sbjct: 170 TALEEEEEDEIDVSAWEALGLSPALQTGISKLKFSTPSTIQQAVIPE-VLAGHDVVGKAS 228
Query: 198 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTR 257
TGSGKTLAFGIPIL +N + + +++ + KK
Sbjct: 229 TGSGKTLAFGIPILEYYLNT-----------------------KGQRDTSKENKKKKKKE 265
Query: 258 NKLYALILAPTRELAIQVQNHILDAGKYTPV---KVACVVGGMSTEKQLRILNKCPHILV 314
++ ALIL+PTRELA Q+ HI +TP ++A + GG++ +KQ R+LN I++
Sbjct: 266 SQPIALILSPTRELAHQLAKHIGALNTHTPAANARIALLTGGLAIQKQQRLLNDA-DIVI 324
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE-TSQPR 373
TPGR+WE + G + + + YLV+DE DR++ GH+ EL+ ILD + E +
Sbjct: 325 GTPGRVWEILSSGTGLIQRMSGVKYLVLDEADRLLSDGHYKELEEILDALDRKEDNDEAD 384
Query: 374 QTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
+ S E K E S RQT VFSAT L+ L+ K K +S
Sbjct: 385 ENSSNSEEEDEQK--------AEASAARQTLVFSATFHKGLQQKLS-----GKGKFMS-- 429
Query: 434 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
DL+N K + Y + + R
Sbjct: 430 -------SDLMN------------------------------KTESMEYLLQKLKFRE-- 450
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCN 552
+ PK +D+ + + L E + C EKD YLY +L HPG R L+F N
Sbjct: 451 ---------EKPKFIDVNPISQMAQGLKEGILECGAMEKDLYLYTLLLYHPGHRCLLFAN 501
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLD 609
SISSV+RL+QLL L L LH++M Q+ RL++++RF + +S+L+ATDVAARGLD
Sbjct: 502 SISSVRRLSQLLQNLGIPALALHSTMEQKARLRSVERFSSPDADPSSVLVATDVAARGLD 561
Query: 610 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
I GI+ VIHYHVPRT+++Y+HRSGRTARA G +V++ DE+
Sbjct: 562 IKGIDIVIHYHVPRTADMYVHRSGRTARAGASGKSVLICAPDEV 605
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD---------LPDFPIDE 1288
D ++HRSGRTARA G ++++ DE+ ++ + + + L +D
Sbjct: 578 DMYVHRSGRTARAGASGKSVLICAPDEVVGVARLVAKVHAQAEAGASTKRNPLESLELDR 637
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
V+S +K RI LAK I E +K K + DNWL AA+++ + D E
Sbjct: 638 RVISRVKPRITLAKKITESNLAKEKISSEDNWLRNAAEELGVDYDSEEF 686
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI +TP ++A + GG++ +KQ R+LN I++ TPG
Sbjct: 270 ALILSPTRELAHQLAKHIGALNTHTPAANARIALLTGGLAIQKQQRLLNDA-DIVIGTPG 328
>gi|154274552|ref|XP_001538127.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|160409985|sp|A6R9U4.1|MAK5_AJECN RecName: Full=ATP-dependent RNA helicase MAK5
gi|150414567|gb|EDN09929.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 772
Score = 293 bits (751), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 203/552 (36%), Positives = 291/552 (52%), Gaps = 76/552 (13%)
Query: 734 KLKQKKK---KKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKT 790
++++KKK K + + E LE + +E V ++ W I I +L + F
Sbjct: 153 EIQRKKKPAPKHDIQSGISFEALEEEVDGDE---VDVSGWDPLGISAEIQTSLSKLRFAK 209
Query: 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV-NKLENPTEEDENDSGLE 849
PT IQ+ +P + + D+VG A TGSGKTLAFGIPIL + N+ E P + ND+ L
Sbjct: 210 PTPIQTACIP-LIASGHDVVGKASTGSGKTLAFGIPILEYYLKNRREEPVQH--NDAELS 266
Query: 850 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP---VK 906
+ ALIL+PTRELA Q+ HI P +
Sbjct: 267 SKYP------------------------IALILSPTRELAHQLSKHITALCTNAPNINAR 302
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966
+A + GG+S +KQ R+L I++ TPGRLW+ I GH L + I +LVIDE DR++
Sbjct: 303 IALLTGGLSVQKQQRVLANA-DIVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRLL 361
Query: 967 ESGHFPELKNIL---DR------VTMTETSQ-------PRQTFVFSATLTHSLKNSLNLK 1010
GHF E++ IL DR VT S+ PRQT VFSAT L+ L
Sbjct: 362 SEGHFKEVEEILTALDRKEIHHKVTADSESEDDASRESPRQTLVFSATFHKGLQQKLA-G 420
Query: 1011 KGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KG+ + S++ L LN + PK +D+ + + L E + C EKD Y
Sbjct: 421 KGRYFDGDLLDDKQSMEYLLKKLNFREDRPKFIDVNPVAQMAENLKEGLVECPAMEKDLY 480
Query: 1069 LYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
LY +L HP RTLVF NSIS+V+RLT L L L LH+SM Q+ RL++++RF
Sbjct: 481 LYTLMLYHPQHRTLVFTNSISAVRRLTAFLQNLNLPALALHSSMAQKARLRSVERFSSPT 540
Query: 1128 ---NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+SIL+ATDVAARGLDI GI+ +IHYHVPRT++ Y+HRSGRTARA+ G +++L +
Sbjct: 541 ADPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRSGRTARASASGKSILLCAPE 600
Query: 1185 EIPLYIKMFNSLE--------------KKVDLPDFPIDESVLSLIKKRIDLAKSI-EYLE 1229
EI ++ + K++ L +D V++ ++ R+ LAK I +
Sbjct: 601 EIVGVARLAAKVHASSTASSSSSSSVTKRLPLHSVDLDRRVIARVRPRVALAKKITNHAL 660
Query: 1230 SKIKKNRPDNWL 1241
+K K + ++WL
Sbjct: 661 AKEKLSSENDWL 672
Score = 266 bits (679), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 194/556 (34%), Positives = 268/556 (48%), Gaps = 125/556 (22%)
Query: 117 KLKQKKK---KKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKT 173
++++KKK K + + E LE + +E V ++ W I I +L + F
Sbjct: 153 EIQRKKKPAPKHDIQSGISFEALEEEVDGDE---VDVSGWDPLGISAEIQTSLSKLRFAK 209
Query: 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV-NKLENPTEEDENDSGLE 232
PT IQ+ +P + + D+VG A TGSGKTLAFGIPIL + N+ E P + ND+ L
Sbjct: 210 PTPIQTACIP-LIASGHDVVGKASTGSGKTLAFGIPILEYYLKNRREEPVQH--NDAELS 266
Query: 233 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP---VK 289
+ ALIL+PTRELA Q+ HI P +
Sbjct: 267 SKYP------------------------IALILSPTRELAHQLSKHITALCTNAPNINAR 302
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349
+A + GG+S +KQ R+L I++ TPGRLW+ I GH L + I +LVIDE DR++
Sbjct: 303 IALLTGGLSVQKQQRVLANA-DIVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRLL 361
Query: 350 ESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ-------PRQ 402
GHF E++ IL T+ R K I +VT S+ PRQ
Sbjct: 362 SEGHFKEVEEIL-------TALDR------------KEIHHKVTADSESEDDASRESPRQ 402
Query: 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGI 460
T VFSAT L+ L KG+ + S++ L LN + PK +D+ +
Sbjct: 403 TLVFSATFHKGLQQKLA-GKGRYFDGDLLDDKQSMEYLLKKLNFREDRPKFIDVNPVAQM 461
Query: 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTL 520
+ L E + C EKD YLY +L HP
Sbjct: 462 AENLKEGLVECPAMEKDLYLYTLMLYHP-------------------------------- 489
Query: 521 TESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 580
QH RTLVF NSIS+V+RLT L L L LH+SM Q
Sbjct: 490 ---------------------QH--RTLVFTNSISAVRRLTAFLQNLNLPALALHSSMAQ 526
Query: 581 RQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+ RL++++RF +SIL+ATDVAARGLDI GI+ +IHYHVPRT++ Y+HRSGRTAR
Sbjct: 527 KARLRSVERFSSPTADPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRSGRTAR 586
Query: 638 ANNEGLTVVLIESDEI 653
A+ G +++L +EI
Sbjct: 587 ASASGKSILLCAPEEI 602
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE--------------KKVDLPD 1283
D ++HRSGRTARA+ G +++L +EI ++ + K++ L
Sbjct: 575 DTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHASSTASSSSSSSVTKRLPLHS 634
Query: 1284 FPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+D V++ ++ R+ LAK I + +K K + ++WL AA D+ + D E +
Sbjct: 635 VDLDRRVIARVRPRVALAKKITNHALAKEKLSSENDWLRSAADDLGVDYDSEEFAE 690
Score = 49.3 bits (116), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 272 ALILSPTRELAHQLSKHITALCTNAPNINARIALLTGGLSVQKQQRVLANA-DIVIGTPG 330
Query: 1413 AL 1414
L
Sbjct: 331 RL 332
>gi|336466285|gb|EGO54450.1| hypothetical protein NEUTE1DRAFT_87798 [Neurospora tetrasperma FGSC
2508]
Length = 808
Score = 293 bits (751), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 192/551 (34%), Positives = 289/551 (52%), Gaps = 106/551 (19%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+ M+EWV ++ +I ++ + F PT IQS +P ++A D++G A TGSGKTLAFG
Sbjct: 203 IDMSEWVPLDLSPRMISSIAKLRFSKPTVIQSKAIPE-IMAGHDVIGKASTGSGKTLAFG 261
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IP++ ++ +A T + K+ R ALIL+P
Sbjct: 262 IPVIESWLS-----------------------------AAETRKQNKEERKGATALILSP 292
Query: 885 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942
TRELA Q+++H+ L G T + V+GGM+ +KQ R L + I++ATPGR+WE +
Sbjct: 293 TRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQL-QVADIVIATPGRMWEVMS 351
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQP---------- 989
+ L L I++LV+DE DR+++ GHF E + I LDR + E ++
Sbjct: 352 SDNSVLASLRNISFLVLDEADRLLKDGHFKEAEEIFKALDRPPVEENNEDQKMGGTDEEG 411
Query: 990 ---------------------------RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 1022
RQT +FSAT +L+ L G+SK K S
Sbjct: 412 QEEEEEDSEEEEEEEEEEEEEEEHVNKRQTLIFSATFNKNLQQKL---AGKSKFKATSTQ 468
Query: 1023 DPSIKRLQDLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-T 1080
D ++ L LN + +PK VD + + L E I+C EKD YLY ++ P R
Sbjct: 469 D--MEYLLQKLNFRETPKFVDANPVHQMAENLKEGLIMCGDMEKDLYLYATLMLQPTRRA 526
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR--------DQNNSILL 1132
LVF NS++SV+RLT LL L PLH+ M Q+ RL+++DRF+ + + +IL+
Sbjct: 527 LVFTNSVNSVRRLTPLLENLNLPAFPLHSGMIQQARLRSIDRFKANEGAKKKNGSAAILV 586
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE-IP---L 1188
ATDVAARGLDIP ++ VIHYHVPR +E Y+HRSGRTARA+N G +++L E +P L
Sbjct: 587 ATDVAARGLDIPDVDLVIHYHVPRAAEDYVHRSGRTARASNSGTSILLCGPKEAVPTQRL 646
Query: 1189 YIKMFNSLEKKV-------------DLPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKK 1234
K+ E K L ID +++ +++R+DLAK I + +++K
Sbjct: 647 VAKVHAQAEVKAGNSGNNTKKLVSSGLRTIDIDRRIVAKLRERVDLAKKIADAVQAKTMG 706
Query: 1235 NRPDNWLHRSG 1245
+ D+W+ ++
Sbjct: 707 GKEDDWMKKAA 717
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 180/358 (50%), Gaps = 51/358 (14%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+ M+EWV ++ +I ++ + F PT IQS +P ++A D++G A TGSGKTLAFG
Sbjct: 203 IDMSEWVPLDLSPRMISSIAKLRFSKPTVIQSKAIPE-IMAGHDVIGKASTGSGKTLAFG 261
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IP++ ++ +A T + K+ R ALIL+P
Sbjct: 262 IPVIESWLS-----------------------------AAETRKQNKEERKGATALILSP 292
Query: 268 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 325
TRELA Q+++H+ L G T + V+GGM+ +KQ R L + I++ATPGR+WE +
Sbjct: 293 TRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQL-QVADIVIATPGRMWEVMS 351
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQPRQ-------- 374
+ L L I++LV+DE DR+++ GHF E + I LDR + E ++ ++
Sbjct: 352 SDNSVLASLRNISFLVLDEADRLLKDGHFKEAEEIFKALDRPPVEENNEDQKMGGTDEEG 411
Query: 375 -TMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
E E + + E RQT +FSAT +L+ L G+SK K S
Sbjct: 412 QEEEEEDSEEEEEEEEEEEEEEEHVNKRQTLIFSATFNKNLQQKL---AGKSKFKATSTQ 468
Query: 434 DPSIKRLQDLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
D ++ L LN + +PK VD + + L E I+C EKD YLY ++ P R
Sbjct: 469 D--MEYLLQKLNFRETPKFVDANPVHQMAENLKEGLIMCGDMEKDLYLYATLMLQPTR 524
Score = 153 bits (386), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 10/158 (6%)
Query: 500 LNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSV 557
LN + +PK VD + + L E I+C EKD YLY ++ P R LVF NS++SV
Sbjct: 477 LNFRETPKFVDANPVHQMAENLKEGLIMCGDMEKDLYLYATLMLQPTRRALVFTNSVNSV 536
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR--------DQNNSILLATDVAARGLD 609
+RLT LL L PLH+ M Q+ RL+++DRF+ + + +IL+ATDVAARGLD
Sbjct: 537 RRLTPLLENLNLPAFPLHSGMIQQARLRSIDRFKANEGAKKKNGSAAILVATDVAARGLD 596
Query: 610 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
IP ++ VIHYHVPR +E Y+HRSGRTARA+N G +++L
Sbjct: 597 IPDVDLVIHYHVPRAAEDYVHRSGRTARASNSGTSILL 634
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 1351 RYSWDALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 1408
R ALIL+PTRELA Q+++H+ L G T + V+GGM+ +KQ R L + I++
Sbjct: 282 RKGATALILSPTRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQL-QVADIVI 340
Query: 1409 ATPGAL 1414
ATPG +
Sbjct: 341 ATPGRM 346
>gi|254578440|ref|XP_002495206.1| ZYRO0B05852p [Zygosaccharomyces rouxii]
gi|238938096|emb|CAR26273.1| ZYRO0B05852p [Zygosaccharomyces rouxii]
Length = 751
Score = 293 bits (749), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 190/515 (36%), Positives = 276/515 (53%), Gaps = 74/515 (14%)
Query: 766 QMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
++ EW K + T++ L Q+GF PT IQ V+P AL +DI+G A TGSGKTLA+G
Sbjct: 182 ELPEWQKIAPLSFTVLNGLSQQGFTKPTDIQKEVLPLAL-KNEDIMGKAATGSGKTLAYG 240
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IP+L +V+ E D + S LI P
Sbjct: 241 IPLLESLVH------EPDHSKS-------------------------------IGLIFTP 263
Query: 885 TRELAIQVQNHILDAGKY----TPVKVACVVGGMSTEKQLRILN--KCPHILVATPGRLW 938
TRELA QV H+ G+ + + + GG+S +KQ RIL I+VATPGR
Sbjct: 264 TRELAQQVTQHLKKLGQLIIQKSKFAILPLTGGLSIQKQERILKYENSARIVVATPGRFL 323
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR---QTFVF 995
E I+ + +IN LV+DE DR+++ GHF E + IL + S + QT +F
Sbjct: 324 ELIEKNIDLIPRFARINTLVLDEADRLLQDGHFDEFEKILKLLGGARKSFDKTGWQTMIF 383
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLT 1054
SAT + SL + L +S K + + +K L + KS P IVD + I +
Sbjct: 384 SATFSLSLFSKLATASWKSLKKDEDEMEQVLKHLMQKIRFKSKPVIVDTNSEEKIKSQIR 443
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
ES I C E+D Y YYF+ +PG TL+FCNSI SVK+L LK +H+SM Q+
Sbjct: 444 ESLIECGPMERDLYSYYFLAMYPGTTLIFCNSIDSVKKLCAYFNNLKIDAFQIHSSMTQK 503
Query: 1115 QRLKNLDRF---RDQNNS-----ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166
RL++L+R+ QN+S +L+A+DVAARGLDIPGI+HV+HYH+PRT++ YIHRSG
Sbjct: 504 NRLRSLERYLQKSAQNDSQNKATVLVASDVAARGLDIPGIKHVVHYHLPRTADTYIHRSG 563
Query: 1167 RTARANNEGLTLVLIESDEI--PLYIKMFNSLEKKV-------------DLPDFPIDESV 1211
RTARA+NEG+++++ +E PL K+ L K ++P PI+ +
Sbjct: 564 RTARADNEGVSVMICSPEEAMGPLR-KLRKMLADKSAEDEYTKHKKWQKEVPLLPIELDI 622
Query: 1212 LSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRSG 1245
++ +K+R LA + E+ + N+ DNW+ ++
Sbjct: 623 VNELKERGSLASELAEHQLALTSINKQDNWMQKAA 657
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 179/540 (33%), Positives = 256/540 (47%), Gaps = 137/540 (25%)
Query: 149 QMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
++ EW K + T++ L Q+GF PT IQ V+P AL +DI+G A TGSGKTLA+G
Sbjct: 182 ELPEWQKIAPLSFTVLNGLSQQGFTKPTDIQKEVLPLAL-KNEDIMGKAATGSGKTLAYG 240
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IP+L +V+ E D + S LI P
Sbjct: 241 IPLLESLVH------EPDHSKS-------------------------------IGLIFTP 263
Query: 268 TRELAIQVQNHILDAGKY----TPVKVACVVGGMSTEKQLRILN--KCPHILVATPGRLW 321
TRELA QV H+ G+ + + + GG+S +KQ RIL I+VATPGR
Sbjct: 264 TRELAQQVTQHLKKLGQLIIQKSKFAILPLTGGLSIQKQERILKYENSARIVVATPGRFL 323
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
E I+ + +IN LV+DE DR+++ GHF E + IL + R++ ++G
Sbjct: 324 ELIEKNIDLIPRFARINTLVLDEADRLLQDGHFDEFEKILKLL-----GGARKSFDKTGW 378
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 441
QT +FSAT + SL + L +S K + + +K L
Sbjct: 379 --------------------QTMIFSATFSLSLFSKLATASWKSLKKDEDEMEQVLKHLM 418
Query: 442 DLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500
+ KS P IVD + I + ES I C E+D Y YYF+ +PG TL
Sbjct: 419 QKIRFKSKPVIVDTNSEEKIKSQIRESLIECGPMERDLYSYYFLAMYPGTTL-------- 470
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 560
I C NSI SVK+L
Sbjct: 471 ------------------------IFC------------------------NSIDSVKKL 482
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNS-----ILLATDVAARGLDIPG 612
LK +H+SM Q+ RL++L+R+ QN+S +L+A+DVAARGLDIPG
Sbjct: 483 CAYFNNLKIDAFQIHSSMTQKNRLRSLERYLQKSAQNDSQNKATVLVASDVAARGLDIPG 542
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI--PLKTKFNLQEEENNEEE 670
I+HV+HYH+PRT++ YIHRSGRTARA+NEG++V++ +E PL+ + +++ E+E
Sbjct: 543 IKHVVHYHLPRTADTYIHRSGRTARADNEGVSVMICSPEEAMGPLRKLRKMLADKSAEDE 602
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 18/121 (14%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLYIKMFNSLEKKV-------------DLP 1282
D ++HRSGRTARA+NEG+++++ +E PL K+ L K ++P
Sbjct: 556 DTYIHRSGRTARADNEGVSVMICSPEEAMGPLR-KLRKMLADKSAEDEYTKHKKWQKEVP 614
Query: 1283 DFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIID-DENLIQPN 1340
PI+ +++ +K+R LA + E+ + N+ DNW++KAA+D+ I ID DE + N
Sbjct: 615 LLPIELDIVNELKERGSLASELAEHQLALTSINKQDNWMQKAAEDLGIDIDSDEEFMDSN 674
Query: 1341 Q 1341
+
Sbjct: 675 K 675
Score = 44.7 bits (104), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKY----TPVKVACVVGGMSTEKQLRILN--KCPHILVA 1409
LI PTRELA QV H+ G+ + + + GG+S +KQ RIL I+VA
Sbjct: 258 GLIFTPTRELAQQVTQHLKKLGQLIIQKSKFAILPLTGGLSIQKQERILKYENSARIVVA 317
Query: 1410 TPG---ALSLKRIDL 1421
TPG L K IDL
Sbjct: 318 TPGRFLELIEKNIDL 332
>gi|258575119|ref|XP_002541741.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902007|gb|EEP76408.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 777
Score = 292 bits (748), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 192/524 (36%), Positives = 278/524 (53%), Gaps = 74/524 (14%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
++ W + + +L + F +PT IQS +P A+L D++G A TGSGKTLAFGIP
Sbjct: 186 VSAWDPLGLRAELQTSLARLKFCSPTPIQSACIP-AVLQGHDVIGKASTGSGKTLAFGIP 244
Query: 827 ILTGIVNKLENPTEE---DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
I+ + + PT + N+ G +A ALIL+
Sbjct: 245 IVEHYLGRY--PTGQAPASSNEDGTSGKAP------------------------IALILS 278
Query: 884 PTRELAIQVQNHILDA---GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEF 940
PTRELA Q+ H+ D +T ++A V GG+S KQ R+L I++ATPGRLWE
Sbjct: 279 PTRELAHQLNKHLTDLISNAPHTSARIASVTGGLSIYKQQRLLADA-DIIIATPGRLWEV 337
Query: 941 IQLGHFHLTELYKINYLVIDETDRMIESGHFPE---LKNILDRVTMTETS---------- 987
I LT+L +I +LVIDE DR++ GHF E + N LDRV TE
Sbjct: 338 IGSMPGFLTKLKRIKFLVIDEADRLLSEGHFKEAEEIVNALDRVEKTEEGYEEGSEPGSP 397
Query: 988 -------QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--P 1038
+ RQT VFSAT L+ L+ K + K + S++ L LN + P
Sbjct: 398 EEEEEEQRQRQTLVFSATFHKGLQQKLSGKIRYRNDDLLDKKE-SMEYLLRKLNFREERP 456
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLL 1097
K +D+ + + L E + C +KD +LY +L HP RTL+F NSIS+V+R+TQ L
Sbjct: 457 KFIDVNPISQMAENLKEGLVQCAPMDKDLFLYSLLLYHPKHRTLIFTNSISAVRRITQFL 516
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVIHYHV 1154
L LH+SM Q+ RL++++RF ++ SIL+ATDVAARGLDI GI+ ++HYHV
Sbjct: 517 QNLSLPAFALHSSMAQKARLRSVERFSAPSSDPSSILVATDVAARGLDIKGIDLIVHYHV 576
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------------KKVDL 1202
PRT++ Y+HRSGRTARA+ G ++++ DE ++ L KKV L
Sbjct: 577 PRTADTYVHRSGRTARASASGKSILICAPDETTGVARLVAKLHSNTKNANEEPKRKKVSL 636
Query: 1203 PDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRSG 1245
+D ++ ++ R+ LAK I E + +K K + D+WL +
Sbjct: 637 QSIDLDRRIIDRLRPRVTLAKQITESVLAKEKLSSEDDWLRSAA 680
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 190/542 (35%), Positives = 267/542 (49%), Gaps = 115/542 (21%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
++ W + + +L + F +PT IQS +P A+L D++G A TGSGKTLAFGIP
Sbjct: 186 VSAWDPLGLRAELQTSLARLKFCSPTPIQSACIP-AVLQGHDVIGKASTGSGKTLAFGIP 244
Query: 210 ILTGIVNKLENPTEE---DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
I+ + + PT + N+ G +A ALIL+
Sbjct: 245 IVEHYLGRY--PTGQAPASSNEDGTSGKAP------------------------IALILS 278
Query: 267 PTRELAIQVQNHILDA---GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEF 323
PTRELA Q+ H+ D +T ++A V GG+S KQ R+L I++ATPGRLWE
Sbjct: 279 PTRELAHQLNKHLTDLISNAPHTSARIASVTGGLSIYKQQRLLADA-DIIIATPGRLWEV 337
Query: 324 IQLGHFHLTELYKINYLVIDETDRMIESGHFPE---LKNILDRVTMTETSQPRQTMIESG 380
I LT+L +I +LVIDE DR++ GHF E + N LDRV TE
Sbjct: 338 IGSMPGFLTKLKRIKFLVIDEADRLLSEGHFKEAEEIVNALDRVEKTEEG---------- 387
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
+ E E + RQT VFSAT L+ Q S K+ R
Sbjct: 388 -YEEGSEPGSPEEEEEEQRQRQTLVFSATFHKGLQ--------QKLSGKIRY------RN 432
Query: 441 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500
DLL D+K+S Y +L+ L
Sbjct: 433 DDLL-----------------------------DKKESMEY--LLRK------------L 449
Query: 501 NIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSV 557
N + PK +D+ + + L E + C +KD +LY +L HP RTL+F NSIS+V
Sbjct: 450 NFREERPKFIDVNPISQMAENLKEGLVQCAPMDKDLFLYSLLLYHPKHRTLIFTNSISAV 509
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDIPGIE 614
+R+TQ L L LH+SM Q+ RL++++RF ++ SIL+ATDVAARGLDI GI+
Sbjct: 510 RRITQFLQNLSLPAFALHSSMAQKARLRSVERFSAPSSDPSSILVATDVAARGLDIKGID 569
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP----LKTKFNLQEEENNEEE 670
++HYHVPRT++ Y+HRSGRTARA+ G ++++ DE L K + + NEE
Sbjct: 570 LIVHYHVPRTADTYVHRSGRTARASASGKSILICAPDETTGVARLVAKLHSNTKNANEEP 629
Query: 671 ER 672
+R
Sbjct: 630 KR 631
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------------KKVDLPDFP 1285
D ++HRSGRTARA+ G ++++ DE ++ L KKV L
Sbjct: 581 DTYVHRSGRTARASASGKSILICAPDETTGVARLVAKLHSNTKNANEEPKRKKVSLQSID 640
Query: 1286 IDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+D ++ ++ R+ LAK I E + +K K + D+WL AA+D+ + D + +
Sbjct: 641 LDRRIIDRLRPRVTLAKQITESVLAKEKLSSEDDWLRSAAEDLGVDYDSDEFAE 694
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDA---GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ D +T ++A V GG+S KQ R+L I++ATPG
Sbjct: 274 ALILSPTRELAHQLNKHLTDLISNAPHTSARIASVTGGLSIYKQQRLLADA-DIIIATPG 332
Query: 1413 AL 1414
L
Sbjct: 333 RL 334
>gi|226288117|gb|EEH43630.1| ATP-dependent RNA helicase MAK5 [Paracoccidioides brasiliensis Pb18]
Length = 772
Score = 292 bits (747), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 204/562 (36%), Positives = 291/562 (51%), Gaps = 79/562 (14%)
Query: 726 QSDEPHSKK------LKQKKKKKQTYTSANKELLEVDTSNNED--MFVQMAEWVKFNIPE 777
++DEP KK K K KK + + + D N ED V ++ W I
Sbjct: 144 RADEPREKKRLKLKEAKGKNNKKHAPRTDVQPGMSFDALNEEDDQEDVDVSAWEPLGISA 203
Query: 778 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 837
+ +L + F PT IQS +P + A D+VG A TGSGKTLAF IPIL LEN
Sbjct: 204 ELQTSLAKLKFAKPTPIQSACIP-VIAAGHDVVGKAPTGSGKTLAFVIPILE---YHLEN 259
Query: 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 897
+E ++G + +R ALIL+PTRELA Q+ H+
Sbjct: 260 NRDEPIQNTGSD----------------------SSRKHPIALILSPTRELAHQISKHLT 297
Query: 898 DAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
P ++A + GG+S +KQ R+L I++ TPGRLW+ I G + + I
Sbjct: 298 AFISNAPNINARIALLTGGLSVQKQHRLLANA-DIVIGTPGRLWDVISNGQGLIRKFQSI 356
Query: 955 NYLVIDETDRMIESGHFPELKNIL---DRVTMTET----------------SQPRQTFVF 995
+LV+DE DR++ GHF E++ IL DR + + S PRQT VF
Sbjct: 357 KFLVVDEADRLLSEGHFKEVEEILTALDRKEINDGVEESDSDSESERANIKSFPRQTLVF 416
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKG----DPSIKRLQDLLNIKS--PKIVDLTEKIGI 1049
SAT L+ L KS+ + G S++ L + LN + PK +D+ +
Sbjct: 417 SATFHRGLQQKL-----AGKSRFIDGGLLDNKESMEYLLEKLNFREEKPKFIDVNPVSQM 471
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
+ L E + C EKD YLY +L H RTLVF NSIS+V+RLT L L L LH
Sbjct: 472 AENLKEGLVECPAMEKDLYLYTLMLYHLNYRTLVFTNSISAVRRLTSFLQNLNLPALSLH 531
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
+SM Q+ RL++++RF +SIL+ATDVAARGLDI GI+ +IHYHVPRT++ Y+HRSGRT
Sbjct: 532 SSMAQKARLRSVERF-SSPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRSGRT 590
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSLE--------KKVDLPDFPIDESVLSLIKKRID 1220
ARA+ G +++L +EI ++ + K++ L +D V++ ++ R+
Sbjct: 591 ARASASGKSILLCAPEEIVGVARLAAKVHTSNLVTSSKRLPLHSVDLDRHVIARVRPRVA 650
Query: 1221 LAKSI-EYLESKIKKNRPDNWL 1241
LAK I E+ +K K D+WL
Sbjct: 651 LAKKITEHTLAKEKLLSEDDWL 672
Score = 257 bits (657), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 190/562 (33%), Positives = 271/562 (48%), Gaps = 114/562 (20%)
Query: 109 QSDEPSSKK------LKQKKKKKQTYTSANKELLEVDTSNNED--MFVQMAEWVKFNIPE 160
++DEP KK K K KK + + + D N ED V ++ W I
Sbjct: 144 RADEPREKKRLKLKEAKGKNNKKHAPRTDVQPGMSFDALNEEDDQEDVDVSAWEPLGISA 203
Query: 161 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 220
+ +L + F PT IQS +P + A D+VG A TGSGKTLAF IPIL LEN
Sbjct: 204 ELQTSLAKLKFAKPTPIQSACIP-VIAAGHDVVGKAPTGSGKTLAFVIPILE---YHLEN 259
Query: 221 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 280
+E ++G + +R ALIL+PTRELA Q+ H+
Sbjct: 260 NRDEPIQNTGSD----------------------SSRKHPIALILSPTRELAHQISKHLT 297
Query: 281 DAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
P ++A + GG+S +KQ R+L I++ TPGRLW+ I G + + I
Sbjct: 298 AFISNAPNINARIALLTGGLSVQKQHRLLANA-DIVIGTPGRLWDVISNGQGLIRKFQSI 356
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
+LV+DE DR++ GHF E++ IL T+ R+ + + + + +R +
Sbjct: 357 KFLVVDEADRLLSEGHFKEVEEIL-------TALDRKEINDGVEESDSDSESERANI--K 407
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG----DPSIKRLQDLLNIKS--PKI 451
S PRQT VFSAT L+ L KS+ + G S++ L + LN + PK
Sbjct: 408 SFPRQTLVFSATFHRGLQQKL-----AGKSRFIDGGLLDNKESMEYLLEKLNFREEKPKF 462
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
+D+ + + L E + C EKD YLY +L H LN ++
Sbjct: 463 IDVNPVSQMAENLKEGLVECPAMEKDLYLYTLMLYH------------LNYRT------- 503
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
LVF NSIS+V+RLT L L
Sbjct: 504 ------------------------------------LVFTNSISAVRRLTSFLQNLNLPA 527
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
L LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI GI+ +IHYHVPRT++ Y+HR
Sbjct: 528 LSLHSSMAQKARLRSVERF-SSPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHR 586
Query: 632 SGRTARANNEGLTVVLIESDEI 653
SGRTARA+ G +++L +EI
Sbjct: 587 SGRTARASASGKSILLCAPEEI 608
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE--------KKVDLPDFPIDES 1289
D ++HRSGRTARA+ G +++L +EI ++ + K++ L +D
Sbjct: 581 DTYVHRSGRTARASASGKSILLCAPEEIVGVARLAAKVHTSNLVTSSKRLPLHSVDLDRH 640
Query: 1290 VLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
V++ ++ R+ LAK I E+ +K K D+WL AA+D+ + D E +
Sbjct: 641 VIARVRPRVALAKKITEHTLAKEKLLSEDDWLRSAAEDLGVDYDSEEFAE 690
Score = 48.1 bits (113), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 279 ALILSPTRELAHQISKHLTAFISNAPNINARIALLTGGLSVQKQHRLLANA-DIVIGTPG 337
Query: 1413 AL 1414
L
Sbjct: 338 RL 339
>gi|396475407|ref|XP_003839779.1| similar to ATP-dependent RNA helicase MAK5 [Leptosphaeria maculans
JN3]
gi|312216349|emb|CBX96300.1| similar to ATP-dependent RNA helicase MAK5 [Leptosphaeria maculans
JN3]
Length = 826
Score = 291 bits (746), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/461 (37%), Positives = 259/461 (56%), Gaps = 53/461 (11%)
Query: 743 QTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSA 802
+T+ + ++L D ++D V ++ W + N+ E ++ AL + F+ PT+IQ+ +P
Sbjct: 225 ETFGPSAFDIL-ADQPIDDDDEVDVSAWEELNLSEQVLDALAKLNFQKPTEIQASTIPE- 282
Query: 803 LLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEE 862
++A +D++G A TGSGKTLAFGIPI+ ++ P +D D
Sbjct: 283 IMAGRDVIGKASTGSGKTLAFGIPIIESFLSA--QPGLKDSKD----------------- 323
Query: 863 SANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL---DAGKYTPVKVACVVGGMSTEKQ 919
+ ALI+APTRELA Q+ H++ G + +A + GG+S +KQ
Sbjct: 324 ------------HTPIALIVAPTRELAHQITAHLIALCTKGDFNAPHIASITGGLSVQKQ 371
Query: 920 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL- 978
R L K I+V TPGRLWE I G L + +I +LVIDE DR++ GH+ EL +IL
Sbjct: 372 RRQLEKA-DIVVGTPGRLWEVISTGQGLLEKFKQIRFLVIDEADRLLSDGHYQELGDILK 430
Query: 979 ----DRVTM---TETSQP---RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 1028
D + + + P RQT VFSAT SL+ L K K++ + S++
Sbjct: 431 ILEPDSEAVDGENDDATPELNRQTLVFSATFGKSLQQKLAGKSRPDKAEMSQQA--SMEY 488
Query: 1029 LQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCN 1085
L L + PK +D + L E I C EKD YLY ++ + R LVF N
Sbjct: 489 LLKKLKFREEKPKFIDANPNSQMANKLKEGLIECAGPEKDLYLYSLLMFYSKKRALVFTN 548
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
SIS+V+RLT L L LPLH++M Q+ RL++++RF+++ SIL+ATDVAARGLDIP
Sbjct: 549 SISAVRRLTPYLCNLDLPALPLHSNMAQKARLRSIERFKERPGSILVATDVAARGLDIPK 608
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+E VIHYH+PR ++ Y+HRSGRTARA+ G ++++ +E+
Sbjct: 609 VELVIHYHLPRAADTYVHRSGRTARADASGTSILICAPEEV 649
Score = 249 bits (636), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 171/536 (31%), Positives = 260/536 (48%), Gaps = 119/536 (22%)
Query: 126 QTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSA 185
+T+ + ++L D ++D V ++ W + N+ E ++ AL + F+ PT+IQ+ +P
Sbjct: 225 ETFGPSAFDIL-ADQPIDDDDEVDVSAWEELNLSEQVLDALAKLNFQKPTEIQASTIPE- 282
Query: 186 LLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEE 245
++A +D++G A TGSGKTLAFGIPI+ ++ P +D D
Sbjct: 283 IMAGRDVIGKASTGSGKTLAFGIPIIESFLSA--QPGLKDSKD----------------- 323
Query: 246 SANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL---DAGKYTPVKVACVVGGMSTEKQ 302
+ ALI+APTRELA Q+ H++ G + +A + GG+S +KQ
Sbjct: 324 ------------HTPIALIVAPTRELAHQITAHLIALCTKGDFNAPHIASITGGLSVQKQ 371
Query: 303 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 362
R L K I+V TPGRLWE I G L + +I +LVIDE DR++ GH+ EL +IL
Sbjct: 372 RRQLEKA-DIVVGTPGRLWEVISTGQGLLEKFKQIRFLVIDEADRLLSDGHYQELGDIL- 429
Query: 363 RVTMTETSQPRQTMIESGH---FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419
+ +P ++ + PEL RQT VFSAT SL+ L
Sbjct: 430 -----KILEPDSEAVDGENDDATPELN--------------RQTLVFSATFGKSLQQKLA 470
Query: 420 LKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKD 477
K K++ + S++ L L + PK +D + L E I C EKD
Sbjct: 471 GKSRPDKAEMSQQA--SMEYLLKKLKFREEKPKFIDANPNSQMANKLKEGLIECAGPEKD 528
Query: 478 SYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 537
YLY ++ + + + + T I + LT YL
Sbjct: 529 LYLYSLLMFYSKK---------------RALVFTNSISAVRRLT------------PYL- 560
Query: 538 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597
CN L LPLH++M Q+ RL++++RF+++ SI
Sbjct: 561 -------------CN--------------LDLPALPLHSNMAQKARLRSIERFKERPGSI 593
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
L+ATDVAARGLDIP +E VIHYH+PR ++ Y+HRSGRTARA+ G ++++ +E+
Sbjct: 594 LVATDVAARGLDIPKVELVIHYHLPRAADTYVHRSGRTARADASGTSILICAPEEV 649
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHIL---DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALI+APTRELA Q+ H++ G + +A + GG+S +KQ R L K I+V TPG
Sbjct: 328 ALIVAPTRELAHQITAHLIALCTKGDFNAPHIASITGGLSVQKQRRQLEKA-DIVVGTPG 386
Query: 1413 AL 1414
L
Sbjct: 387 RL 388
>gi|45190633|ref|NP_984887.1| AER027Wp [Ashbya gossypii ATCC 10895]
gi|74693626|sp|Q757I6.1|MAK5_ASHGO RecName: Full=ATP-dependent RNA helicase MAK5
gi|44983612|gb|AAS52711.1| AER027Wp [Ashbya gossypii ATCC 10895]
gi|374108110|gb|AEY97017.1| FAER027Wp [Ashbya gossypii FDAG1]
Length = 752
Score = 291 bits (746), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 185/537 (34%), Positives = 281/537 (52%), Gaps = 88/537 (16%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
E+ D +E ++ W + T+++ L + GF PT+IQ +P AL DI
Sbjct: 162 EIFNKDIGLDEAEAPELPSWTNTMKLSATVLQGLSRLGFSNPTEIQLQSIPKALDGH-DI 220
Query: 810 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869
+G A TGSGKTLA+GIPIL GI+ D+ DS
Sbjct: 221 MGKASTGSGKTLAYGIPILEGII--------RDDTDS----------------------- 249
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMSTEKQLRIL-- 923
+ LI PTRELA QV +H+ + G K P + C+ GG+S +KQ R+L
Sbjct: 250 ------RPIGLIFTPTRELAHQVTDHLREVGALLVKRNPYSIMCLTGGLSIQKQERLLKY 303
Query: 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
++VATPGR E ++ + K++ LV+DE DR+++ GHF E + IL ++
Sbjct: 304 KGSARVVVATPGRFLELLEKDQTLIDRFAKVDTLVLDEADRLLQDGHFEEFERILKHLSR 363
Query: 984 TE-----TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN---- 1034
+T ++SAT + N L+ + KK+ K PS ++++L
Sbjct: 364 ARKFTNGKKHGWKTMIYSATFSLDYFNKLS----NTSWKKMKKA-PSENEMEEVLKHLMT 418
Query: 1035 ----IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 1090
P I+D + + + ES I C E+D Y+YYF+ +PG TLVFCN+I SV
Sbjct: 419 KIPFRGKPLIIDTNPEQKVASQIKESLIECLPTERDLYVYYFVTLYPGTTLVFCNAIDSV 478
Query: 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN--------SILLATDVAARGLD 1142
K+L L LK S +H+SM Q+ RLK+L++F++Q ++L+A+DVAARGLD
Sbjct: 479 KKLNAYLHNLKISAFQIHSSMLQKNRLKSLEKFQEQAKKNQALNKPTVLIASDVAARGLD 538
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PLYIKMFNSLEKKV 1200
IPGI+HVIHYH+PR++++YIHRSGRTARA NEG+ + + E PL K+ L K
Sbjct: 539 IPGIQHVIHYHLPRSADVYIHRSGRTARAENEGVAVTICSPQEAMGPLR-KLRRVLAGKA 597
Query: 1201 ---------DLPDFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLHRSG 1245
++ P++ ++S +++R LA ++ E S + K+ DNWL ++
Sbjct: 598 GSKGKRWQNEIALLPVEPDIVSQLRERSRLASALADSEIATSSLSKD--DNWLKKAA 652
Score = 258 bits (659), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 173/545 (31%), Positives = 257/545 (47%), Gaps = 141/545 (25%)
Query: 134 ELLEVDTSNNEDMFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
E+ D +E ++ W + T+++ L + GF PT+IQ +P AL DI
Sbjct: 162 EIFNKDIGLDEAEAPELPSWTNTMKLSATVLQGLSRLGFSNPTEIQLQSIPKALDGH-DI 220
Query: 193 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252
+G A TGSGKTLA+GIPIL GI+ D+ DS
Sbjct: 221 MGKASTGSGKTLAYGIPILEGII--------RDDTDS----------------------- 249
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMSTEKQLRILN- 307
+ LI PTRELA QV +H+ + G K P + C+ GG+S +KQ R+L
Sbjct: 250 ------RPIGLIFTPTRELAHQVTDHLREVGALLVKRNPYSIMCLTGGLSIQKQERLLKY 303
Query: 308 -KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 366
++VATPGR E ++ + K++ LV+DE DR+++ G
Sbjct: 304 KGSARVVVATPGRFLELLEKDQTLIDRFAKVDTLVLDEADRLLQDG-------------- 349
Query: 367 TETSQPRQTMIESGHFPELKNILDRVTMTET-----SQPRQTFVFSATLTHSLKNSLNLK 421
HF E + IL ++ +T ++SAT + N L+
Sbjct: 350 --------------HFEEFERILKHLSRARKFTNGKKHGWKTMIYSATFSLDYFNKLS-- 393
Query: 422 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 481
+ S K+++ K+P +E + L
Sbjct: 394 ------------NTSWKKMK-----KAPS----------------------ENEMEEVLK 414
Query: 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 541
+ + + P R P I+D + + + ES I C E+D Y+YYF+
Sbjct: 415 HLMTKIPFRG------------KPLIIDTNPEQKVASQIKESLIECLPTERDLYVYYFVT 462
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN------ 595
+PG TLVFCN+I SVK+L L LK S +H+SM Q+ RLK+L++F++Q
Sbjct: 463 LYPGTTLVFCNAIDSVKKLNAYLHNLKISAFQIHSSMLQKNRLKSLEKFQEQAKKNQALN 522
Query: 596 --SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
++L+A+DVAARGLDIPGI+HVIHYH+PR++++YIHRSGRTARA NEG+ V + E
Sbjct: 523 KPTVLIASDVAARGLDIPGIQHVIHYHLPRSADVYIHRSGRTARAENEGVAVTICSPQEA 582
Query: 654 --PLK 656
PL+
Sbjct: 583 MGPLR 587
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMSTEKQLRIL--NKCPHILVA 1409
LI PTRELA QV +H+ + G K P + C+ GG+S +KQ R+L ++VA
Sbjct: 253 GLIFTPTRELAHQVTDHLREVGALLVKRNPYSIMCLTGGLSIQKQERLLKYKGSARVVVA 312
Query: 1410 TPG 1412
TPG
Sbjct: 313 TPG 315
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 17/112 (15%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLYIKMFNSLEKKV---------DLPDFPI 1286
D ++HRSGRTARA NEG+ + + E PL K+ L K ++ P+
Sbjct: 555 DVYIHRSGRTARAENEGVAVTICSPQEAMGPLR-KLRRVLAGKAGSKGKRWQNEIALLPV 613
Query: 1287 DESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLEKAAKDMDIIIDDEN 1335
+ ++S +++R LA ++ E S + K+ DNWL+KAA D+ I +D ++
Sbjct: 614 EPDIVSQLRERSRLASALADSEIATSSLSKD--DNWLKKAADDLGIDVDSDD 663
>gi|302890093|ref|XP_003043931.1| hypothetical protein NECHADRAFT_99434 [Nectria haematococca mpVI
77-13-4]
gi|256724850|gb|EEU38218.1| hypothetical protein NECHADRAFT_99434 [Nectria haematococca mpVI
77-13-4]
Length = 760
Score = 291 bits (745), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 180/508 (35%), Positives = 266/508 (52%), Gaps = 71/508 (13%)
Query: 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
A WV N+ I+ A+ + GF PT IQ +P +++ +D++G A+TGSGKTLAFGIP+
Sbjct: 194 AAWVPLNLSPQILSAIAKLGFTKPTLIQEKTIPE-IVSGEDVIGKAQTGSGKTLAFGIPM 252
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
+ E EL E+ R +++L+PTRE
Sbjct: 253 V-------------------------EKWLELYEQGVE--------RTGPMSVVLSPTRE 279
Query: 888 LAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
LA Q+ +H+ L G V V GG+S +KQ R L K I++ TPGRLWE +
Sbjct: 280 LAKQLGDHLKALCDGLSNAPYVCVVTGGLSIQKQQRQLEKA-DIVIGTPGRLWEVLSGDA 338
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRV------------------TMTETS 987
KI +LV+DE DR+ + G F E ++I+ + +
Sbjct: 339 TLQNTFSKIRFLVVDEADRLFKVGQFKEAEDIIGALDGKRPSDDADSSDEEDDEEEDDER 398
Query: 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEK 1046
RQT VFSAT L+ L K K + + L L + PK +D+
Sbjct: 399 SARQTLVFSATFDKDLQTKL-----AGKGKSTGNDEEKMAYLMKCLKFRGEPKFIDVNPV 453
Query: 1047 IGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPL 1105
+ L E I C EKD YLY ++ +PG RTLVF NSIS+V+RLT LL+ L + L
Sbjct: 454 SQMADGLKEGLIECGAMEKDLYLYTVLILNPGRRTLVFTNSISAVRRLTPLLSNLNMTAL 513
Query: 1106 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
PLH+ M Q+ RL++L+RF NS+L+ATDVAARGLDI ++ V+HYHVPR+++ YIHRS
Sbjct: 514 PLHSQMAQKARLRSLERFTAARNSVLIATDVAARGLDIKEVDQVLHYHVPRSADTYIHRS 573
Query: 1166 GRTARANNEGLTLVLIESDEI--------PLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217
GRTAR + G++++L DE+ ++ + + +++ + P+D + S +K
Sbjct: 574 GRTARGESSGVSVILCAPDEVLPTRRLASKVHAERSSGAKREHFIQTLPVDRKMASRLKP 633
Query: 1218 RIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
R+DLAK I + + +K K + D WL +
Sbjct: 634 RVDLAKKIADSVLAKEKAHSDDTWLRNA 661
Score = 258 bits (658), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 172/506 (33%), Positives = 246/506 (48%), Gaps = 108/506 (21%)
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
A WV N+ I+ A+ + GF PT IQ +P +++ +D++G A+TGSGKTLAFGIP+
Sbjct: 194 AAWVPLNLSPQILSAIAKLGFTKPTLIQEKTIPE-IVSGEDVIGKAQTGSGKTLAFGIPM 252
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
+ E EL E+ R +++L+PTRE
Sbjct: 253 V-------------------------EKWLELYEQGVE--------RTGPMSVVLSPTRE 279
Query: 271 LAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
LA Q+ +H+ L G V V GG+S +KQ R L K I++ TPGRLWE +
Sbjct: 280 LAKQLGDHLKALCDGLSNAPYVCVVTGGLSIQKQQRQLEKA-DIVIGTPGRLWEVLSGDA 338
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
KI +LV+DE DR+ + G F E ++I+ + + +P S + +
Sbjct: 339 TLQNTFSKIRFLVVDEADRLFKVGQFKEAEDIIGAL---DGKRPSDDADSSDEEDDEEED 395
Query: 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 448
+R RQT VFSAT L+
Sbjct: 396 DER-------SARQTLVFSATFDKDLQ--------------------------------- 415
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508
TK + K +EK +YL C + + PK +
Sbjct: 416 ------------TKLAGKGKSTGNDEEKMAYLMK----------CLKFRG-----EPKFI 448
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTML 567
D+ + L E I C EKD YLY ++ +PGR TLVF NSIS+V+RLT LL+ L
Sbjct: 449 DVNPVSQMADGLKEGLIECGAMEKDLYLYTVLILNPGRRTLVFTNSISAVRRLTPLLSNL 508
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+ LPLH+ M Q+ RL++L+RF NS+L+ATDVAARGLDI ++ V+HYHVPR+++
Sbjct: 509 NMTALPLHSQMAQKARLRSLERFTAARNSVLIATDVAARGLDIKEVDQVLHYHVPRSADT 568
Query: 628 YIHRSGRTARANNEGLTVVLIESDEI 653
YIHRSGRTAR + G++V+L DE+
Sbjct: 569 YIHRSGRTARGESSGVSVILCAPDEV 594
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 9/108 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--------PLYIKMFNSLEKKVDLPDFPIDES 1289
D ++HRSGRTAR + G++++L DE+ ++ + + +++ + P+D
Sbjct: 567 DTYIHRSGRTARGESSGVSVILCAPDEVLPTRRLASKVHAERSSGAKREHFIQTLPVDRK 626
Query: 1290 VLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
+ S +K R+DLAK I + + +K K + D WL AA ++ + D ++L
Sbjct: 627 MASRLKPRVDLAKKIADSVLAKEKAHSDDTWLRNAADELGVEYDSDDL 674
Score = 44.3 bits (103), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+++L+PTRELA Q+ +H+ L G V V GG+S +KQ R L K I++ TPG
Sbjct: 271 SVVLSPTRELAKQLGDHLKALCDGLSNAPYVCVVTGGLSIQKQQRQLEKA-DIVIGTPGR 329
Query: 1414 L 1414
L
Sbjct: 330 L 330
>gi|440469812|gb|ELQ38909.1| ATP-dependent RNA helicase mak5 [Magnaporthe oryzae Y34]
Length = 760
Score = 291 bits (745), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 191/528 (36%), Positives = 281/528 (53%), Gaps = 63/528 (11%)
Query: 746 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
T + L E+D + D ++EW + E I+ ++ + F PT IQ+ +P +LA
Sbjct: 168 TGSFAALAEIDET---DEGADVSEWEPLGLSEEIMSSIAKLKFAKPTAIQAATIPE-ILA 223
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
D+VG A TGSGKTLAFGIPI V + L ++
Sbjct: 224 GHDVVGKASTGSGKTLAFGIPI---------------------------VEKWLSINAST 256
Query: 866 TTEFVKKTRNKL-YALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRI 922
++ V + K AL+L+PTRELA Q+ +HI L AG T V V GG+S KQ R
Sbjct: 257 QSKRVAEGETKTPIALVLSPTRELAHQLTDHIKNLCAGLATSPYVCSVTGGLSVHKQQRQ 316
Query: 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 982
L K I+V TPGRLWE + + I +LV+DE DR++ GHF + K+I + +
Sbjct: 317 LEKA-DIVVGTPGRLWEVLSSSTKLIQAFRGIKFLVVDEADRLLSEGHFKDAKDIFEGLD 375
Query: 983 MTET--------SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 1034
ET + RQT VFSAT L+ L K + + +K+L+
Sbjct: 376 KVETDDDGIIRGGKARQTLVFSATFNKGLQQKLAGKGRFDLATDSQSMEYLLKKLKFREE 435
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRL 1093
I PK +D+ + + L E + C EKD YLY +L HP RTLVF NSISSV+RL
Sbjct: 436 I--PKFIDVNPVSQMAEGLKEGIVECGAMEKDLYLYSLLLMHPTQRTLVFTNSISSVRRL 493
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHVI 1150
T +L L + LH+ M Q+ RL++++RF + + SIL+ATDVAARGLDI GI+ VI
Sbjct: 494 TPMLQQLTLPVIALHSQMIQKARLRSVERFTSSKPGSASILIATDVAARGLDIRGIDVVI 553
Query: 1151 HYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------------- 1197
HYHVPRT++ Y+HRSGRTARA++ GL++++ +E+ ++ +
Sbjct: 554 HYHVPRTADAYVHRSGRTARADSSGLSILICAPEEVTPTRRLVAKVHASAAAKGKKKGSA 613
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
V + +D ++S +++R+ LAK I + +K K + DNW+ ++
Sbjct: 614 GGVFVHSVELDRRLVSKLRERVQLAKQIADSTLAKEKIGKEDNWMQKA 661
Score = 157 bits (398), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 107/153 (69%), Gaps = 4/153 (2%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQL 563
PK +D+ + + L E + C EKD YLY +L HP RTLVF NSISSV+RLT +
Sbjct: 437 PKFIDVNPVSQMAEGLKEGIVECGAMEKDLYLYSLLLMHPTQRTLVFTNSISSVRRLTPM 496
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHVIHYH 620
L L + LH+ M Q+ RL++++RF + + SIL+ATDVAARGLDI GI+ VIHYH
Sbjct: 497 LQQLTLPVIALHSQMIQKARLRSVERFTSSKPGSASILIATDVAARGLDIRGIDVVIHYH 556
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
VPRT++ Y+HRSGRTARA++ GL++++ +E+
Sbjct: 557 VPRTADAYVHRSGRTARADSSGLSILICAPEEV 589
Score = 156 bits (394), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 170/369 (46%), Gaps = 58/369 (15%)
Query: 129 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
T + L E+D + D ++EW + E I+ ++ + F PT IQ+ +P +LA
Sbjct: 168 TGSFAALAEIDET---DEGADVSEWEPLGLSEEIMSSIAKLKFAKPTAIQAATIPE-ILA 223
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
D+VG A TGSGKTLAFGIPI V + L ++
Sbjct: 224 GHDVVGKASTGSGKTLAFGIPI---------------------------VEKWLSINAST 256
Query: 249 TTEFVKKTRNKL-YALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRI 305
++ V + K AL+L+PTRELA Q+ +HI L AG T V V GG+S KQ R
Sbjct: 257 QSKRVAEGETKTPIALVLSPTRELAHQLTDHIKNLCAGLATSPYVCSVTGGLSVHKQQRQ 316
Query: 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 365
L K I+V TPGRLWE + + I +LV+DE DR++ GHF + K+I + +
Sbjct: 317 LEKA-DIVVGTPGRLWEVLSSSTKLIQAFRGIKFLVVDEADRLLSEGHFKDAKDIFEGLD 375
Query: 366 MTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 425
ET D + + RQT VFSAT L+ L K
Sbjct: 376 KVET--------------------DDDGIIRGGKARQTLVFSATFNKGLQQKLAGKGRFD 415
Query: 426 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 485
+ + +K+L+ I PK +D+ + + L E + C EKD YLY +L
Sbjct: 416 LATDSQSMEYLLKKLKFREEI--PKFIDVNPVSQMAEGLKEGIVECGAMEKDLYLYSLLL 473
Query: 486 QHPG-RTLC 493
HP RTL
Sbjct: 474 MHPTQRTLV 482
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 14/113 (12%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE-------------KKVDLPDF 1284
D ++HRSGRTARA++ GL++++ +E+ ++ + V +
Sbjct: 562 DAYVHRSGRTARADSSGLSILICAPEEVTPTRRLVAKVHASAAAKGKKKGSAGGVFVHSV 621
Query: 1285 PIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
+D ++S +++R+ LAK I + +K K + DNW++KAA+++ + D E+L
Sbjct: 622 ELDRRLVSKLRERVQLAKQIADSTLAKEKIGKEDNWMQKAAEELGVEYDSEDL 674
Score = 54.3 bits (129), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
AL+L+PTRELA Q+ +HI L AG T V V GG+S KQ R L K I+V TPG
Sbjct: 271 ALVLSPTRELAHQLTDHIKNLCAGLATSPYVCSVTGGLSVHKQQRQLEKA-DIVVGTPGR 329
Query: 1414 L------SLKRIDLAKSIEYL 1428
L S K I + I++L
Sbjct: 330 LWEVLSSSTKLIQAFRGIKFL 350
>gi|389641713|ref|XP_003718489.1| ATP-dependent RNA helicase MAK5 [Magnaporthe oryzae 70-15]
gi|374095422|sp|A4REU9.2|MAK5_MAGO7 RecName: Full=ATP-dependent RNA helicase MAK5
gi|351641042|gb|EHA48905.1| ATP-dependent RNA helicase MAK5 [Magnaporthe oryzae 70-15]
gi|440476884|gb|ELQ58053.1| ATP-dependent RNA helicase mak5 [Magnaporthe oryzae P131]
Length = 760
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 191/528 (36%), Positives = 281/528 (53%), Gaps = 63/528 (11%)
Query: 746 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
T + L E+D + D ++EW + E I+ ++ + F PT IQ+ +P +LA
Sbjct: 168 TGSFAALAEIDET---DEGADVSEWEPLGLSEEIMSSIAKLKFAKPTAIQAATIPE-ILA 223
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
D+VG A TGSGKTLAFGIPI V + L ++
Sbjct: 224 GHDVVGKASTGSGKTLAFGIPI---------------------------VEKWLSINAST 256
Query: 866 TTEFVKKTRNKL-YALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRI 922
++ V + K AL+L+PTRELA Q+ +HI L AG T V V GG+S KQ R
Sbjct: 257 QSKRVAEGETKTPIALVLSPTRELAHQLTDHIKNLCAGLATSPYVCSVTGGLSVHKQQRQ 316
Query: 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 982
L K I+V TPGRLWE + + I +LV+DE DR++ GHF + K+I + +
Sbjct: 317 LEKA-DIVVGTPGRLWEVLSSSTKLIQAFRGIKFLVVDEADRLLSEGHFKDAKDIFEGLD 375
Query: 983 MTET--------SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 1034
ET + RQT VFSAT L+ L K + + +K+L+
Sbjct: 376 KVETDDDGIIRGGKARQTLVFSATFNKGLQQKLAGKGRFDLATDSQSMEYLLKKLKFREE 435
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRL 1093
I PK +D+ + + L E + C EKD YLY +L HP RTLVF NSISSV+RL
Sbjct: 436 I--PKFIDVNPVSQMAEGLKEGIVECGAMEKDLYLYSLLLMHPTQRTLVFTNSISSVRRL 493
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHVI 1150
T +L L + LH+ M Q+ RL++++RF + + SIL+ATDVAARGLDI GI+ VI
Sbjct: 494 TPMLQQLTLPVIALHSQMIQKARLRSVERFTSSKPGSASILIATDVAARGLDIRGIDVVI 553
Query: 1151 HYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------------- 1197
HYHVPRT++ Y+HRSGRTARA++ GL++++ +E+ ++ +
Sbjct: 554 HYHVPRTADAYVHRSGRTARADSSGLSILICAPEEVTPTRRLVAKVHASAAAKGKKKGSA 613
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
V + +D ++S +++R+ LAK I + +K K + DNW+ ++
Sbjct: 614 GGVFVHSVELDRRLVSKLRERVQLAKQIADSTLAKEKIGKEDNWMQKA 661
Score = 157 bits (398), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 107/153 (69%), Gaps = 4/153 (2%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQL 563
PK +D+ + + L E + C EKD YLY +L HP RTLVF NSISSV+RLT +
Sbjct: 437 PKFIDVNPVSQMAEGLKEGIVECGAMEKDLYLYSLLLMHPTQRTLVFTNSISSVRRLTPM 496
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHVIHYH 620
L L + LH+ M Q+ RL++++RF + + SIL+ATDVAARGLDI GI+ VIHYH
Sbjct: 497 LQQLTLPVIALHSQMIQKARLRSVERFTSSKPGSASILIATDVAARGLDIRGIDVVIHYH 556
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
VPRT++ Y+HRSGRTARA++ GL++++ +E+
Sbjct: 557 VPRTADAYVHRSGRTARADSSGLSILICAPEEV 589
Score = 156 bits (394), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 170/369 (46%), Gaps = 58/369 (15%)
Query: 129 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
T + L E+D + D ++EW + E I+ ++ + F PT IQ+ +P +LA
Sbjct: 168 TGSFAALAEIDET---DEGADVSEWEPLGLSEEIMSSIAKLKFAKPTAIQAATIPE-ILA 223
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
D+VG A TGSGKTLAFGIPI V + L ++
Sbjct: 224 GHDVVGKASTGSGKTLAFGIPI---------------------------VEKWLSINAST 256
Query: 249 TTEFVKKTRNKL-YALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRI 305
++ V + K AL+L+PTRELA Q+ +HI L AG T V V GG+S KQ R
Sbjct: 257 QSKRVAEGETKTPIALVLSPTRELAHQLTDHIKNLCAGLATSPYVCSVTGGLSVHKQQRQ 316
Query: 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 365
L K I+V TPGRLWE + + I +LV+DE DR++ GHF + K+I + +
Sbjct: 317 LEKA-DIVVGTPGRLWEVLSSSTKLIQAFRGIKFLVVDEADRLLSEGHFKDAKDIFEGLD 375
Query: 366 MTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 425
ET D + + RQT VFSAT L+ L K
Sbjct: 376 KVET--------------------DDDGIIRGGKARQTLVFSATFNKGLQQKLAGKGRFD 415
Query: 426 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 485
+ + +K+L+ I PK +D+ + + L E + C EKD YLY +L
Sbjct: 416 LATDSQSMEYLLKKLKFREEI--PKFIDVNPVSQMAEGLKEGIVECGAMEKDLYLYSLLL 473
Query: 486 QHPG-RTLC 493
HP RTL
Sbjct: 474 MHPTQRTLV 482
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 14/113 (12%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE-------------KKVDLPDF 1284
D ++HRSGRTARA++ GL++++ +E+ ++ + V +
Sbjct: 562 DAYVHRSGRTARADSSGLSILICAPEEVTPTRRLVAKVHASAAAKGKKKGSAGGVFVHSV 621
Query: 1285 PIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
+D ++S +++R+ LAK I + +K K + DNW++KAA+++ + D E+L
Sbjct: 622 ELDRRLVSKLRERVQLAKQIADSTLAKEKIGKEDNWMQKAAEELGVEYDSEDL 674
Score = 54.3 bits (129), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
AL+L+PTRELA Q+ +HI L AG T V V GG+S KQ R L K I+V TPG
Sbjct: 271 ALVLSPTRELAHQLTDHIKNLCAGLATSPYVCSVTGGLSVHKQQRQLEKA-DIVVGTPGR 329
Query: 1414 L------SLKRIDLAKSIEYL 1428
L S K I + I++L
Sbjct: 330 LWEVLSSSTKLIQAFRGIKFL 350
>gi|189201219|ref|XP_001936946.1| ATP-dependent RNA helicase MAK5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984045|gb|EDU49533.1| ATP-dependent RNA helicase MAK5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 778
Score = 290 bits (743), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 183/508 (36%), Positives = 273/508 (53%), Gaps = 64/508 (12%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
++ W + + E ++ AL + F PT IQ +P +LA +D++G A TGSGKTLAFGIP
Sbjct: 208 VSAWDELELSEEMLGALAKLKFSKPTTIQKSTIPE-ILAGRDVIGKASTGSGKTLAFGIP 266
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
I+ + + ++E E+ + ALI+APTR
Sbjct: 267 IVESYLASRSSASKEPEDKMPI------------------------------ALIIAPTR 296
Query: 887 ELAIQVQNHILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943
ELA Q+ H++ G + P +A + GG+S +KQ R L K I+V TPGRLWE I
Sbjct: 297 ELAHQINAHLIALCAKGDFDPPYIASITGGLSVQKQRRQLEKA-DIVVGTPGRLWEVISD 355
Query: 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-----DRVT--MTETSQP----RQT 992
G L + +I +LV+DE DR++ GHF E+ IL D VT E+ + RQT
Sbjct: 356 GQGLLRKFKQIKFLVVDEADRLLSEGHFKEMGEILKVLEPDDVTDENAESDEKEEIKRQT 415
Query: 993 FVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS---IKRLQDLLNIKSPKIVDLTEKIGI 1049
VFSAT L+ L K S +S+ +K+LQ + P +D +
Sbjct: 416 LVFSATFGKDLQRKLAGKVKGGGSDLMSQQQSMEYLLKKLQ--FREEKPVFIDANPMSQM 473
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
L E I C EKD YLY ++ + R LVF NSIS+V+R+T LT L LPLH
Sbjct: 474 ASKLQEGLIECAGTEKDLYLYSLLMFYTKKRALVFTNSISAVRRITPFLTNLALPALPLH 533
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
++M Q+ RL++++RF+++ SIL+ATDVAARGLDIP +E VIHYH+PR ++ Y+HRSGRT
Sbjct: 534 SNMPQKARLRSIERFKERPGSILVATDVAARGLDIPRVELVIHYHLPRAADTYVHRSGRT 593
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSLEKKV-DLPD----------FPIDESVLSLIKK 1217
ARA G ++++ +E+ ++ + + D P ID ++S +K
Sbjct: 594 ARAEASGASILICAPEEVAGVRRLVAKVHARASDAPKSKKTAFFIRTLDIDRRIVSRLKP 653
Query: 1218 RIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
R ++K + + + +K KK+ D+ L R+
Sbjct: 654 RATISKRLADTVIAKEKKHSEDDVLRRA 681
Score = 156 bits (395), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 110/342 (32%), Positives = 160/342 (46%), Gaps = 57/342 (16%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
++ W + + E ++ AL + F PT IQ +P +LA +D++G A TGSGKTLAFGIP
Sbjct: 208 VSAWDELELSEEMLGALAKLKFSKPTTIQKSTIPE-ILAGRDVIGKASTGSGKTLAFGIP 266
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
I+ + + ++E E+ + ALI+APTR
Sbjct: 267 IVESYLASRSSASKEPEDKMPI------------------------------ALIIAPTR 296
Query: 270 ELAIQVQNHILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326
ELA Q+ H++ G + P +A + GG+S +KQ R L K I+V TPGRLWE I
Sbjct: 297 ELAHQINAHLIALCAKGDFDPPYIASITGGLSVQKQRRQLEKA-DIVVGTPGRLWEVISD 355
Query: 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386
G L + +I +LV+DE DR++ GHF E+ IL + +P E+ E +
Sbjct: 356 GQGLLRKFKQIKFLVVDEADRLLSEGHFKEMGEIL------KVLEPDDVTDENAESDEKE 409
Query: 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS---IKRLQDL 443
I RQT VFSAT L+ L K S +S+ +K+LQ
Sbjct: 410 EI-----------KRQTLVFSATFGKDLQRKLAGKVKGGGSDLMSQQQSMEYLLKKLQ-- 456
Query: 444 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 485
+ P +D + L E I C EKD YLY ++
Sbjct: 457 FREEKPVFIDANPMSQMASKLQEGLIECAGTEKDLYLYSLLM 498
Score = 152 bits (384), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQL 563
P +D + L E I C EKD YLY ++ + R LVF NSIS+V+R+T
Sbjct: 462 PVFIDANPMSQMASKLQEGLIECAGTEKDLYLYSLLMFYTKKRALVFTNSISAVRRITPF 521
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
LT L LPLH++M Q+ RL++++RF+++ SIL+ATDVAARGLDIP +E VIHYH+PR
Sbjct: 522 LTNLALPALPLHSNMPQKARLRSIERFKERPGSILVATDVAARGLDIPRVELVIHYHLPR 581
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEI 653
++ Y+HRSGRTARA G ++++ +E+
Sbjct: 582 AADTYVHRSGRTARAEASGASILICAPEEV 611
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHIL---DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALI+APTRELA Q+ H++ G + P +A + GG+S +KQ R L K I+V TPG
Sbjct: 289 ALIIAPTRELAHQINAHLIALCAKGDFDPPYIASITGGLSVQKQRRQLEKA-DIVVGTPG 347
Query: 1413 AL 1414
L
Sbjct: 348 RL 349
Score = 43.9 bits (102), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV-DLPD----------FPI 1286
D ++HRSGRTARA G ++++ +E+ ++ + + D P I
Sbjct: 584 DTYVHRSGRTARAEASGASILICAPEEVAGVRRLVAKVHARASDAPKSKKTAFFIRTLDI 643
Query: 1287 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIID 1332
D ++S +K R ++K + + + +K KK+ D+ L +AA+D+ + D
Sbjct: 644 DRRIVSRLKPRATISKRLADTVIAKEKKHSEDDVLRRAAEDLGVDYD 690
>gi|336262101|ref|XP_003345836.1| hypothetical protein SMAC_07120 [Sordaria macrospora k-hell]
gi|380088610|emb|CCC13496.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 807
Score = 290 bits (742), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 192/548 (35%), Positives = 289/548 (52%), Gaps = 103/548 (18%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V M+EWV ++ +I ++ + F PT IQ+ +P ++A D++G A TGSGKTLAFG
Sbjct: 205 VDMSEWVPLDLSPRMISSIAKLKFTKPTLIQAQAIPQ-IMAGHDVIGKASTGSGKTLAFG 263
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IP++ ++ AEE ++ + E +N ALIL+P
Sbjct: 264 IPLVEAWLS------------------AEETRKQNKGE-----------KNGATALILSP 294
Query: 885 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942
TRELA Q+++H+ L G T + V+GGM+ +KQ R L I++ATPGR+WE +
Sbjct: 295 TRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQL-AVADIVIATPGRMWEVMS 353
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQ----------- 988
+ L L I++LV+DE DR+++ G F E + I LDR + E ++
Sbjct: 354 SDNSVLAALRNISFLVLDEADRLLKDGSFKEAEEIFKALDRQAVEENNEDQKMGNTDEEG 413
Query: 989 -----------------------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 1025
RQT VFSAT +L+ L G+S+ K S D
Sbjct: 414 QEQEEEQSEEEEEEEEEEEEPVNKRQTLVFSATFNKNLQQKL---AGKSRFKATSTQD-- 468
Query: 1026 IKRLQDLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVF 1083
++ L LN + +PK VD + + L E I+C EKD YLY ++ P R LVF
Sbjct: 469 MEYLLQKLNFRETPKFVDANPVHQMAENLKEGLIMCGDMEKDLYLYATLMLQPTRRALVF 528
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR--------DQNNSILLATD 1135
NS++SV+RLT LL L PLH+ M Q+ RL+++DRF+ + + +IL+ATD
Sbjct: 529 TNSVNSVRRLTPLLENLNLPAFPLHSGMIQQARLRSIDRFKANEGAKKKNGSAAILVATD 588
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE-IP---LYIK 1191
VAARGLDIP ++ VIHYHVPR +E Y+HRSGRTARA+N G +++L E +P L K
Sbjct: 589 VAARGLDIPEVDLVIHYHVPRAAEDYVHRSGRTARASNSGTSILLCGPKEAVPTQRLVAK 648
Query: 1192 MFNSLEKKV-------------DLPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRP 1237
+ E K L ID +++ +++R+DLAK I + +++K +
Sbjct: 649 VHAQAEVKAGNSGNNTKKLVSNGLRTIDIDRRIVAKLRERVDLAKKIADAVQAKTMGGKE 708
Query: 1238 DNWLHRSG 1245
D+W+ ++
Sbjct: 709 DDWMKKAA 716
Score = 160 bits (404), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 184/355 (51%), Gaps = 48/355 (13%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V M+EWV ++ +I ++ + F PT IQ+ +P ++A D++G A TGSGKTLAFG
Sbjct: 205 VDMSEWVPLDLSPRMISSIAKLKFTKPTLIQAQAIPQ-IMAGHDVIGKASTGSGKTLAFG 263
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IP++ ++ AEE ++ + E +N ALIL+P
Sbjct: 264 IPLVEAWLS------------------AEETRKQNKGE-----------KNGATALILSP 294
Query: 268 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 325
TRELA Q+++H+ L G T + V+GGM+ +KQ R L I++ATPGR+WE +
Sbjct: 295 TRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQL-AVADIVIATPGRMWEVMS 353
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQPRQ---TMIES 379
+ L L I++LV+DE DR+++ G F E + I LDR + E ++ ++ T E
Sbjct: 354 SDNSVLAALRNISFLVLDEADRLLKDGSFKEAEEIFKALDRQAVEENNEDQKMGNTDEEG 413
Query: 380 GHFPELKNILDRVTMTETSQP---RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
E ++ + E +P RQT VFSAT +L+ L G+S+ K S D
Sbjct: 414 QEQEEEQSEEEEEEEEEEEEPVNKRQTLVFSATFNKNLQQKL---AGKSRFKATSTQD-- 468
Query: 437 IKRLQDLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
++ L LN + +PK VD + + L E I+C EKD YLY ++ P R
Sbjct: 469 MEYLLQKLNFRETPKFVDANPVHQMAENLKEGLIMCGDMEKDLYLYATLMLQPTR 523
Score = 153 bits (386), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 10/158 (6%)
Query: 500 LNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSV 557
LN + +PK VD + + L E I+C EKD YLY ++ P R LVF NS++SV
Sbjct: 476 LNFRETPKFVDANPVHQMAENLKEGLIMCGDMEKDLYLYATLMLQPTRRALVFTNSVNSV 535
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR--------DQNNSILLATDVAARGLD 609
+RLT LL L PLH+ M Q+ RL+++DRF+ + + +IL+ATDVAARGLD
Sbjct: 536 RRLTPLLENLNLPAFPLHSGMIQQARLRSIDRFKANEGAKKKNGSAAILVATDVAARGLD 595
Query: 610 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
IP ++ VIHYHVPR +E Y+HRSGRTARA+N G +++L
Sbjct: 596 IPEVDLVIHYHVPRAAEDYVHRSGRTARASNSGTSILL 633
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 18/117 (15%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDE-IP---LYIKMFNSLEKKV-------------D 1280
++++HRSGRTARA+N G +++L E +P L K+ E K
Sbjct: 612 EDYVHRSGRTARASNSGTSILLCGPKEAVPTQRLVAKVHAQAEVKAGNSGNNTKKLVSNG 671
Query: 1281 LPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
L ID +++ +++R+DLAK I + +++K + D+W++KAA+D+ + D E L
Sbjct: 672 LRTIDIDRRIVAKLRERVDLAKKIADAVQAKTMGGKEDDWMKKAAEDLGVEYDSEEL 728
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
ALIL+PTRELA Q+++H+ L G T + V+GGM+ +KQ R L I++ATPG
Sbjct: 289 ALILSPTRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQL-AVADIVIATPGR 347
Query: 1414 L 1414
+
Sbjct: 348 M 348
>gi|143345244|sp|Q0CI35.2|MAK5_ASPTN RecName: Full=ATP-dependent RNA helicase mak5
Length = 774
Score = 290 bits (742), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 190/515 (36%), Positives = 279/515 (54%), Gaps = 66/515 (12%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
ED V ++ W + I+ +L + F +PT +Q +P +L D+VG A TGSGKT
Sbjct: 195 EDDGVDISAWESLGLSPEILNSLSKLKFSSPTAVQKSCIPP-ILDGHDVVGKASTGSGKT 253
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFGIPIL E LE+ E+ N + K AL
Sbjct: 254 LAFGIPIL------------------------EYYLEKKRRETKNKDD---KKETSPIAL 286
Query: 881 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
IL+PTRELA Q+ HI + + P ++A + GG+S +KQ R+LN I++ TPGR+
Sbjct: 287 ILSPTRELAHQLVKHIGEVITHAPGVNARIALLTGGLSVQKQQRLLNGA-DIVIGTPGRV 345
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ--------- 988
WE + G ++++ +I YLV+DE DR++ GHF E IL + E +
Sbjct: 346 WEVLSGGQGLISKMKEIKYLVVDEADRLLSEGHFKEAHEILAALDREEINDFPGAEEDES 405
Query: 989 -------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PK 1039
RQT VFSAT L+ L K + S ++K + S++ L LN + PK
Sbjct: 406 DDEDSKTQRQTLVFSATFHRDLQQKLAGKGKWTGSDLMNKQE-SMEYLLKKLNFREEKPK 464
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLT 1098
+D+ + + L E + C EKD YLY +L HP RTLVF NSIS+V+RLTQ L
Sbjct: 465 FIDVNPVSQMAEGLKEGIVECAAMEKDLYLYTLLLYHPKHRTLVFTNSISAVRRLTQFLQ 524
Query: 1099 MLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVP 1155
L+ L LH+SM Q+ RL++++RF ++IL+ATDVAARGLDI GI+ VIHYH P
Sbjct: 525 ALQLPALALHSSMAQKARLRSVERFSSPTADPSTILVATDVAARGLDIKGIDFVIHYHAP 584
Query: 1156 RTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPIDE 1209
RT++ Y+HRSGRTARA G ++++ +E+ +++ + K++ L +D
Sbjct: 585 RTADTYVHRSGRTARAGASGKSVIICAPEEMVGVVRLAAKVHANMANGKRLPLESLELDR 644
Query: 1210 SVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWL 1241
++S +K+R+ LA I ++ I K + DNWL
Sbjct: 645 RIVSRVKQRVTLAARI--CDANIAKEKVSAEDNWL 677
Score = 259 bits (663), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 181/518 (34%), Positives = 257/518 (49%), Gaps = 105/518 (20%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
ED V ++ W + I+ +L + F +PT +Q +P +L D+VG A TGSGKT
Sbjct: 195 EDDGVDISAWESLGLSPEILNSLSKLKFSSPTAVQKSCIPP-ILDGHDVVGKASTGSGKT 253
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFGIPIL E LE+ E+ N + K AL
Sbjct: 254 LAFGIPIL------------------------EYYLEKKRRETKNKDD---KKETSPIAL 286
Query: 264 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
IL+PTRELA Q+ HI + + P ++A + GG+S +KQ R+LN I++ TPGR+
Sbjct: 287 ILSPTRELAHQLVKHIGEVITHAPGVNARIALLTGGLSVQKQQRLLNGA-DIVIGTPGRV 345
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
WE + G ++++ +I YLV+DE DR++ GHF E IL + E +
Sbjct: 346 WEVLSGGQGLISKMKEIKYLVVDEADRLLSEGHFKEAHEILAALDREEIND--------- 396
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
FP + ++T RQT VFSAT L+ L K + S ++K + S++ L
Sbjct: 397 -FPGAEEDESDDEDSKTQ--RQTLVFSATFHRDLQQKLAGKGKWTGSDLMNKQE-SMEYL 452
Query: 441 QDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
LN + PK +D+ + + L E + C EKD YLY +L HP
Sbjct: 453 LKKLNFREEKPKFIDVNPVSQMAEGLKEGIVECAAMEKDLYLYTLLLYHP---------- 502
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
KH RTLVF NSIS+V+
Sbjct: 503 -----------------------------KH----------------RTLVFTNSISAVR 517
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEH 615
RLTQ L L+ L LH+SM Q+ RL++++RF ++IL+ATDVAARGLDI GI+
Sbjct: 518 RLTQFLQALQLPALALHSSMAQKARLRSVERFSSPTADPSTILVATDVAARGLDIKGIDF 577
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
VIHYH PRT++ Y+HRSGRTARA G +V++ +E+
Sbjct: 578 VIHYHAPRTADTYVHRSGRTARAGASGKSVIICAPEEM 615
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 1223 KSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------ 1276
K I+++ D ++HRSGRTARA G ++++ +E+ +++ +
Sbjct: 573 KGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIICAPEEMVGVVRLAAKVHANMANG 632
Query: 1277 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWLEKAAKDMDIIIDD 1333
K++ L +D ++S +K+R+ LA I ++ I K + DNWL+ AA+++ + D
Sbjct: 633 KRLPLESLELDRRIVSRVKQRVTLAARI--CDANIAKEKVSAEDNWLKNAAEELGVDYDS 690
Query: 1334 ENL 1336
E
Sbjct: 691 EEF 693
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI + + P ++A + GG+S +KQ R+LN I++ TPG
Sbjct: 285 ALILSPTRELAHQLVKHIGEVITHAPGVNARIALLTGGLSVQKQQRLLNGA-DIVIGTPG 343
>gi|91207158|sp|Q4WMS3.2|MAK5_ASPFU RecName: Full=ATP-dependent RNA helicase mak5
Length = 777
Score = 290 bits (741), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 189/514 (36%), Positives = 279/514 (54%), Gaps = 60/514 (11%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
ED ++ W + I+ L + F +PT +Q +P +L D++G A TGSGKT
Sbjct: 194 EDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQ-ILEGHDVIGKASTGSGKT 252
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFGIPIL E LE+ ++ + E + + + AL
Sbjct: 253 LAFGIPIL------------------------EHYLEKKRDDISAQKEQMSEKDSTPIAL 288
Query: 881 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
IL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L+ I++ TPGR+
Sbjct: 289 ILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLSGA-DIVIGTPGRV 347
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---DRVTMTET-------- 986
WE + G + ++ +I +LV+DE DR++ GHF E++ IL DRV E
Sbjct: 348 WEILSTGQGLIRKMQQIKFLVVDEADRLLSEGHFKEVEEILNSLDRVEDGEVPDGEDQAS 407
Query: 987 ------SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--P 1038
S RQT VFSAT L+ L K+ ++ + K + S+ L LN + P
Sbjct: 408 EEESDPSSERQTLVFSATFHRDLQQKLAGKRKWTRGDIMDKKE-SMDYLLQKLNFREEKP 466
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLL 1097
K +D+ + L E + C EKD +LY +L HP RTLVF NSIS+V+RLT+LL
Sbjct: 467 KFIDMNPISQMADNLKEGIVECGAMEKDLFLYTLLLYHPKHRTLVFTNSISAVRRLTKLL 526
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVIHYHV 1154
L+ L LH+SM Q+ RL++++RF ++ +IL+ATDVAARGLDI GI+ VIHYH
Sbjct: 527 QTLQLPALALHSSMAQKARLRSVERFSSPSSDPSTILIATDVAARGLDIKGIDLVIHYHA 586
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPID 1208
PRT++ Y+HRSGRTARA G ++++ DE+ +++ + KK+ L +D
Sbjct: 587 PRTADTYVHRSGRTARAGASGKSVIICGPDEMVGVVRLAAKVHANMANGKKLPLESLELD 646
Query: 1209 ESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWL 1241
V+S +K R+ LA I +K K + DNWL
Sbjct: 647 RRVVSRVKPRVSLASRITDANIAKEKISAEDNWL 680
Score = 257 bits (656), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 174/518 (33%), Positives = 260/518 (50%), Gaps = 101/518 (19%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
ED ++ W + I+ L + F +PT +Q +P +L D++G A TGSGKT
Sbjct: 194 EDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQ-ILEGHDVIGKASTGSGKT 252
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFGIPIL E LE+ ++ + E + + + AL
Sbjct: 253 LAFGIPIL------------------------EHYLEKKRDDISAQKEQMSEKDSTPIAL 288
Query: 264 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
IL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L+ I++ TPGR+
Sbjct: 289 ILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLSGA-DIVIGTPGRV 347
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
WE + G + ++ +I +LV+DE DR++ GHF E++ IL+ + +E G
Sbjct: 348 WEILSTGQGLIRKMQQIKFLVVDEADRLLSEGHFKEVEEILNSL----------DRVEDG 397
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
P+ ++ ++ S RQT VFSAT L+ L K+ ++ + K + S+ L
Sbjct: 398 EVPDGEDQA-SEEESDPSSERQTLVFSATFHRDLQQKLAGKRKWTRGDIMDKKE-SMDYL 455
Query: 441 QDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
LN + PK +D+ + L E + C EKD +LY +L HP
Sbjct: 456 LQKLNFREEKPKFIDMNPISQMADNLKEGIVECGAMEKDLFLYTLLLYHP---------- 505
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
KH RTLVF NSIS+V+
Sbjct: 506 -----------------------------KH----------------RTLVFTNSISAVR 520
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEH 615
RLT+LL L+ L LH+SM Q+ RL++++RF + ++IL+ATDVAARGLDI GI+
Sbjct: 521 RLTKLLQTLQLPALALHSSMAQKARLRSVERFSSPSSDPSTILIATDVAARGLDIKGIDL 580
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
VIHYH PRT++ Y+HRSGRTARA G +V++ DE+
Sbjct: 581 VIHYHAPRTADTYVHRSGRTARAGASGKSVIICGPDEM 618
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPIDESVL 1291
D ++HRSGRTARA G ++++ DE+ +++ + KK+ L +D V+
Sbjct: 591 DTYVHRSGRTARAGASGKSVIICGPDEMVGVVRLAAKVHANMANGKKLPLESLELDRRVV 650
Query: 1292 SLIKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDENLIQPN 1340
S +K R+ LA I +K K + DNWL AA+D+ + D E + N
Sbjct: 651 SRVKPRVSLASRITDANIAKEKISAEDNWLRNAAEDLGVEYDSEEFDESN 700
Score = 49.3 bits (116), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L+ I++ TPG
Sbjct: 287 ALILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLSGA-DIVIGTPG 345
>gi|347831310|emb|CCD47007.1| hypothetical protein [Botryotinia fuckeliana]
Length = 774
Score = 289 bits (740), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 199/505 (39%), Positives = 278/505 (55%), Gaps = 61/505 (12%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V ++ W + ++ + AL + GF PT IQS +P +LA D+VG A TGSGKTLAFG
Sbjct: 204 VDVSSWEELDLSSNTLSALSKMGFSKPTPIQSEAIPE-VLAGHDVVGKASTGSGKTLAFG 262
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPI+ E+ E EL+E+ E K TR ALIL+P
Sbjct: 263 IPIV---------------------EKWLEAYGELDED-----ELKKNTRPP-TALILSP 295
Query: 885 TRELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942
TRELA Q+ HI K P VA V GG+S +KQ R L K I++ TPGRLWE I
Sbjct: 296 TRELAHQLTEHITALCKGMPTSPWVAAVTGGLSVQKQQRQLAKA-DIIIGTPGRLWEVIS 354
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ---------PRQTF 993
+ L ++ +LVIDE DR++ GHF E + IL+ + T + PRQT
Sbjct: 355 SSNELSASLKQVRFLVIDEADRLLTDGHFKEAEEILNALDRTHGDEDDEEEDELPPRQTL 414
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITK 1051
VFSAT L+ L KG+ K S+ S++ L LN + PK VD+ +
Sbjct: 415 VFSATFHKGLQQKL-AGKGKQSFKDESQ---SMEYLLKKLNFREEKPKFVDVNPISQMAA 470
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
L E + C +EKD YLY +L HP RTL+F NSI SV+RLT +L L LH+
Sbjct: 471 NLKEGMVECGGEEKDLYLYSLLLHHPNQRTLIFTNSIHSVRRLTPMLQTLNIPAHSLHSQ 530
Query: 1111 MNQRQRLKNLDRFRDQNN--SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
M Q+ R++++++F NN S+L+ATDVAARGLDI G++ VIHYH+PRT+++Y+HRSGRT
Sbjct: 531 MIQKARMRSIEKFSRTNNTGSVLVATDVAARGLDIGGVQLVIHYHLPRTADMYVHRSGRT 590
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMF------NSL-----EKKVDLPDFPIDESVLSLIKK 1217
ARA G +++L +E+ ++ N+L + K + ID V++ +K
Sbjct: 591 ARAAASGSSILLCGPEEVVGTRRLVAKVHAQNALNGEGKKSKFYIRSLDIDRRVVARLKP 650
Query: 1218 RIDLAKSI-EYLESKIKKNRPDNWL 1241
R+ LAK I + +K KK D+W+
Sbjct: 651 RVTLAKKIADSALAKEKKGHDDDWV 675
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 188/519 (36%), Positives = 248/519 (47%), Gaps = 127/519 (24%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V ++ W + ++ + AL + GF PT IQS +P +LA D+VG A TGSGKTLAFG
Sbjct: 204 VDVSSWEELDLSSNTLSALSKMGFSKPTPIQSEAIPE-VLAGHDVVGKASTGSGKTLAFG 262
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IPI+ E+ E EL+E+ E K TR ALIL+P
Sbjct: 263 IPIV---------------------EKWLEAYGELDED-----ELKKNTRPP-TALILSP 295
Query: 268 TRELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 325
TRELA Q+ HI K P VA V GG+S +KQ R L K I++ TPGRLWE I
Sbjct: 296 TRELAHQLTEHITALCKGMPTSPWVAAVTGGLSVQKQQRQLAKA-DIIIGTPGRLWEVIS 354
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385
+ L ++ +LVIDE DR++ GHF E + IL
Sbjct: 355 SSNELSASLKQVRFLVIDEADRLLTDGHFKEAEEIL------------------------ 390
Query: 386 KNILDRVTMTETSQ------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
N LDR E + PRQT VFSAT L+ L KG S K
Sbjct: 391 -NALDRTHGDEDDEEEDELPPRQTLVFSATFHKGLQQKL-----------AGKGKQSFK- 437
Query: 440 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499
DE S Y
Sbjct: 438 ----------------------------------DESQSMEYLL--------------KK 449
Query: 500 LNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISS 556
LN + PK VD+ + L E + C +EKD YLY +L HP RTL+F NSI S
Sbjct: 450 LNFREEKPKFVDVNPISQMAANLKEGMVECGGEEKDLYLYSLLLHHPNQRTLIFTNSIHS 509
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN--SILLATDVAARGLDIPGIE 614
V+RLT +L L LH+ M Q+ R++++++F NN S+L+ATDVAARGLDI G++
Sbjct: 510 VRRLTPMLQTLNIPAHSLHSQMIQKARMRSIEKFSRTNNTGSVLVATDVAARGLDIGGVQ 569
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
VIHYH+PRT+++Y+HRSGRTARA G +++L +E+
Sbjct: 570 LVIHYHLPRTADMYVHRSGRTARAAASGSSILLCGPEEV 608
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGA 1413
ALIL+PTRELA Q+ HI K P VA V GG+S +KQ R L K I++ TPG
Sbjct: 290 ALILSPTRELAHQLTEHITALCKGMPTSPWVAAVTGGLSVQKQQRQLAKA-DIIIGTPGR 348
Query: 1414 L 1414
L
Sbjct: 349 L 349
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF------NSL-----EKKVDLPDFPI 1286
D ++HRSGRTARA G +++L +E+ ++ N+L + K + I
Sbjct: 581 DMYVHRSGRTARAAASGSSILLCGPEEVVGTRRLVAKVHAQNALNGEGKKSKFYIRSLDI 640
Query: 1287 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
D V++ +K R+ LAK I + +K KK D+W++ AA+++ + D+E
Sbjct: 641 DRRVVARLKPRVTLAKKIADSALAKEKKGHDDDWVKNAAEELGVEYDEEEF 691
>gi|167385322|ref|XP_001737297.1| ATP-dependent RNA helicase mak5 [Entamoeba dispar SAW760]
gi|165899942|gb|EDR26421.1| ATP-dependent RNA helicase mak5, putative [Entamoeba dispar SAW760]
Length = 586
Score = 289 bits (740), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 174/486 (35%), Positives = 265/486 (54%), Gaps = 54/486 (11%)
Query: 763 MFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
+ ++M +W+K + + IIRALY GF PT+IQ + + AL KD+VG+A TGSGKTL
Sbjct: 42 LVIEMKKWMKLYKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDVVGSAPTGSGKTL 101
Query: 822 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
+F IPI+ ++ E D+ DS +I
Sbjct: 102 SFLIPIVQRLI-------ELDKIDST------------------------------QCVI 124
Query: 882 LAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE- 939
+ PTRELA+Q+ H KY P + +VGGM+ KQ+R+L++ P I++ TPGRL+E
Sbjct: 125 IVPTRELAVQINEHFKKLIKYLPQFTSSVIVGGMAIPKQVRLLSQEPTIVIGTPGRLYEL 184
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+ + H L L +I ++V+DE DR++E GHF EL +LD E +QTFVFSAT+
Sbjct: 185 YSETEHNVLQTLPEIPFIVLDEADRLLEKGHFIELTKLLDVFNNKE----KQTFVFSATM 240
Query: 1000 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 1059
L K S G+ + R+ L + +++D++ + + E K++
Sbjct: 241 I--------LASEMMAKKYSSNGEDELTRMLQKLKMNDTELIDVSTPQQTVEQMEEKKVV 292
Query: 1060 CKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
+D L+Y + PG+TLVF N+I+ +KRL L M+ CS L++ M QRL+
Sbjct: 293 VPSLVRDEALFYILTYMKPGKTLVFVNAITMIKRLVPLFQMIGCSVCSLYSGMEMSQRLR 352
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
N+++F N+ L TDV+ARG+DI ++ VIHY +PRTSE+Y+HRSGRTARA GL +
Sbjct: 353 NIEKFTKGNDIALFTTDVSARGIDIDDVKTVIHYDLPRTSELYVHRSGRTARAGRSGLCI 412
Query: 1179 VLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD 1238
V +E ++ Y + +L+KK D P +D + KK + LA+ I + KK D
Sbjct: 413 VFVEKEDKTPYEHLLKTLKKK-DFPMIKLDAKPYNFAKKILSLARKISNTNQQHKKISND 471
Query: 1239 NWLHRS 1244
L ++
Sbjct: 472 KALKKA 477
Score = 220 bits (561), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 154/511 (30%), Positives = 235/511 (45%), Gaps = 137/511 (26%)
Query: 146 MFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
+ ++M +W+K + + IIRALY GF PT+IQ + + AL KD+VG+A TGSGKTL
Sbjct: 42 LVIEMKKWMKLYKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDVVGSAPTGSGKTL 101
Query: 205 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264
+F IPI+ ++ E D+ DS +I
Sbjct: 102 SFLIPIVQRLI-------ELDKIDST------------------------------QCVI 124
Query: 265 LAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE- 322
+ PTRELA+Q+ H KY P + +VGGM+ KQ+R+L++ P I++ TPGRL+E
Sbjct: 125 IVPTRELAVQINEHFKKLIKYLPQFTSSVIVGGMAIPKQVRLLSQEPTIVIGTPGRLYEL 184
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
+ + H L L +I ++V+DE DR++E GHF EL +LD E
Sbjct: 185 YSETEHNVLQTLPEIPFIVLDEADRLLEKGHFIELTKLLDVFNNKE-------------- 230
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 442
+QTFVFSAT+ L K S G+ + R+
Sbjct: 231 ------------------KQTFVFSATMI--------LASEMMAKKYSSNGEDELTRMLQ 264
Query: 443 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLCEEIQDLLN 501
L + +++D++ + + E K++ +D L+Y + PG+TL
Sbjct: 265 KLKMNDTELIDVSTPQQTVEQMEEKKVVVPSLVRDEALFYILTYMKPGKTLV-------- 316
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLT 561
I + K L P ++ C+
Sbjct: 317 --------FVNAITMIKRLV----------------------PLFQMIGCSV-------- 338
Query: 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621
CS L++ M QRL+N+++F N+ L TDV+ARG+DI ++ VIHY +
Sbjct: 339 -------CS---LYSGMEMSQRLRNIEKFTKGNDIALFTTDVSARGIDIDDVKTVIHYDL 388
Query: 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
PRTSE+Y+HRSGRTARA GL +V +E ++
Sbjct: 389 PRTSELYVHRSGRTARAGRSGLCIVFVEKED 419
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATP 1411
S +I+ PTRELA+Q+ H KY P + +VGGM+ KQ+R+L++ P I++ TP
Sbjct: 119 STQCVIIVPTRELAVQINEHFKKLIKYLPQFTSSVIVGGMAIPKQVRLLSQEPTIVIGTP 178
Query: 1412 GAL 1414
G L
Sbjct: 179 GRL 181
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA GL +V +E ++ Y + +L+KK D P +D + KK +
Sbjct: 395 YVHRSGRTARAGRSGLCIVFVEKEDKTPYEHLLKTLKKK-DFPMIKLDAKPYNFAKKILS 453
Query: 1300 LAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ I + KK D L+KA D DDE
Sbjct: 454 LARKISNTNQQHKKISNDKALKKALDVDDQSSDDE 488
>gi|410081467|ref|XP_003958313.1| hypothetical protein KAFR_0G01440 [Kazachstania africana CBS 2517]
gi|372464901|emb|CCF59178.1| hypothetical protein KAFR_0G01440 [Kazachstania africana CBS 2517]
Length = 719
Score = 289 bits (739), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 188/531 (35%), Positives = 277/531 (52%), Gaps = 93/531 (17%)
Query: 764 FVQMAEWVKF-NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822
V++ EW K T ++ L + GF PT+IQ+ +P L DI+G A TGSGKTLA
Sbjct: 130 LVELPEWTKLAKFSMTTLQGLAKLGFTKPTEIQAKTIPLG-LGNHDIMGKASTGSGKTLA 188
Query: 823 FGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALIL 882
+GIP+L V F K N+ LI
Sbjct: 189 YGIPMLENFVK----------------------------------SFKSKDNNRAIGLIF 214
Query: 883 APTRELAIQVQNHIL--------DAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVA 932
PTRELA QV H+ + KY + + GG+S +KQ R+L I++A
Sbjct: 215 TPTRELAQQVTQHLTKVSELILKEKNKYA---ILSLTGGLSIQKQERLLKYQGSGKIVIA 271
Query: 933 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR-- 990
TPGR E ++ + + KI+ LV+DE DR+++ GHF E + IL + +
Sbjct: 272 TPGRFLELLEKNNELIERFGKIDTLVLDEADRLLQDGHFDEFEKILKLLGNYRKKSSKSH 331
Query: 991 -QTFVFSATLTHSLKNSL--------NLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKI 1040
QT +FSAT + L N L N G+++ + V +K L ++ KS P I
Sbjct: 332 WQTMIFSATFSTDLFNKLASNHNHNKNKNDGENEMETV------LKHLMTKIHFKSKPVI 385
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
VD ++ + ES I C E+D Y+YYF+ +PG TLVFCN+I SVKRL L +L
Sbjct: 386 VDTNPDEKVSSQIKESLIECAPMERDLYVYYFLAMYPGTTLVFCNAIESVKRLNAYLNLL 445
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRD--QNNS------ILLATDVAARGLDIPGIEHVIHY 1152
S +H+SM Q+ RLKNL++F+ Q+NS +L+A+DVAARGLDIPGI+HVIHY
Sbjct: 446 NISSFQIHSSMTQKNRLKNLEKFKQQAQHNSVLNKATVLIASDVAARGLDIPGIQHVIHY 505
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVL----------------IESDEIPLYIKMFNSL 1196
H+PRT+++YIHRSGRTAR NEG+++++ + S+E L F S
Sbjct: 506 HLPRTADVYIHRSGRTARHKNEGVSVMICSPQESMSSLRKLRKVLSSNEAHLKKGKFRSK 565
Query: 1197 EK-KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHRSG 1245
+K + +P PI+ ++S +++R +A + + K ++ DNWL ++
Sbjct: 566 QKWQKTVPLLPIEIDIVSQLRERSKIASELADHDIASKSLSKDDNWLKKAA 616
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 118/171 (69%), Gaps = 9/171 (5%)
Query: 491 TLCEEIQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 549
T+ + + ++ KS P IVD ++ + ES I C E+D Y+YYF+ +PG TLV
Sbjct: 368 TVLKHLMTKIHFKSKPVIVDTNPDEKVSSQIKESLIECAPMERDLYVYYFLAMYPGTTLV 427
Query: 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ--NNSIL------LAT 601
FCN+I SVKRL L +L S +H+SM Q+ RLKNL++F+ Q +NS+L +A+
Sbjct: 428 FCNAIESVKRLNAYLNLLNISSFQIHSSMTQKNRLKNLEKFKQQAQHNSVLNKATVLIAS 487
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DVAARGLDIPGI+HVIHYH+PRT+++YIHRSGRTAR NEG++V++ E
Sbjct: 488 DVAARGLDIPGIQHVIHYHLPRTADVYIHRSGRTARHKNEGVSVMICSPQE 538
Score = 144 bits (362), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 170/392 (43%), Gaps = 100/392 (25%)
Query: 147 FVQMAEWVKF-NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205
V++ EW K T ++ L + GF PT+IQ+ +P L DI+G A TGSGKTLA
Sbjct: 130 LVELPEWTKLAKFSMTTLQGLAKLGFTKPTEIQAKTIPLGL-GNHDIMGKASTGSGKTLA 188
Query: 206 FGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALIL 265
+GIP+L V F K N+ LI
Sbjct: 189 YGIPMLENFVK----------------------------------SFKSKDNNRAIGLIF 214
Query: 266 APTRELAIQVQNHIL--------DAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVA 315
PTRELA QV H+ + KY + + GG+S +KQ R+L I++A
Sbjct: 215 TPTRELAQQVTQHLTKVSELILKEKNKYA---ILSLTGGLSIQKQERLLKYQGSGKIVIA 271
Query: 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT 375
TPGR E ++ + + KI+ LV+DE DR+++ GHF E + IL
Sbjct: 272 TPGRFLELLEKNNELIERFGKIDTLVLDEADRLLQDGHFDEFEKIL-------------- 317
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL--------NLKKGQSKS 427
+L + QT +FSAT + L N L N G+++
Sbjct: 318 -----------KLLGNYRKKSSKSHWQTMIFSATFSTDLFNKLASNHNHNKNKNDGENEM 366
Query: 428 KKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 486
+ V +K L ++ KS P IVD ++ + ES I C E+D Y+YYF+
Sbjct: 367 ETV------LKHLMTKIHFKSKPVIVDTNPDEKVSSQIKESLIECAPMERDLYVYYFLAM 420
Query: 487 HPGRTL--CEEIQ---------DLLNIKSPKI 507
+PG TL C I+ +LLNI S +I
Sbjct: 421 YPGTTLVFCNAIESVKRLNAYLNLLNISSFQI 452
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 20/119 (16%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVL----------------IESDEIPLYIKMFNSLEK-KV 1279
D ++HRSGRTAR NEG+++++ + S+E L F S +K +
Sbjct: 511 ADVYIHRSGRTARHKNEGVSVMICSPQESMSSLRKLRKVLSSNEAHLKKGKFRSKQKWQK 570
Query: 1280 DLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIII--DDEN 1335
+P PI+ ++S +++R +A + + K ++ DNWL+KAA+D+ I DDEN
Sbjct: 571 TVPLLPIEIDIVSQLRERSKIASELADHDIASKSLSKDDNWLKKAAEDLGIDADSDDEN 629
>gi|119470070|ref|XP_001258007.1| ATP dependent RNA helicase, putative [Neosartorya fischeri NRRL 181]
gi|143345269|sp|A1DMT9.1|MAK5_NEOFI RecName: Full=ATP-dependent RNA helicase mak5
gi|119406159|gb|EAW16110.1| ATP dependent RNA helicase, putative [Neosartorya fischeri NRRL 181]
Length = 777
Score = 289 bits (739), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 191/514 (37%), Positives = 279/514 (54%), Gaps = 60/514 (11%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
ED ++ W + I+ L + F +PT +Q +P +L D++G A TGSGKT
Sbjct: 194 EDDGADVSAWDSLGLSPEILTGLSKMKFASPTSVQEACIPQ-ILEGHDVIGKASTGSGKT 252
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFGIPIL + LE++ +++ E E++S + + AL
Sbjct: 253 LAFGIPIL----------------EHYLEKKRDDISAEKEKKSEKDSTPI--------AL 288
Query: 881 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
IL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L+ I++ TPGR+
Sbjct: 289 ILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLSGA-DIVIGTPGRV 347
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELK---NILDRVTMTET-------- 986
WE + G + ++ +I +LV+DE DR++ GHF E++ N LDRV E
Sbjct: 348 WEILSTGQGLIRKMQQIKFLVVDEADRLLSEGHFKEVEEILNALDRVEDGEVPGGENQAS 407
Query: 987 ------SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--P 1038
S RQT VFSAT L+ L KG+ V S+ L LN + P
Sbjct: 408 EEESDPSSERQTLVFSATFHRDLQQKL-AGKGKWTGGDVMDKKESMDYLLQKLNFREEKP 466
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLL 1097
K +D+ + L E + C EKD +LY +L HP RTLVF NSIS+V+RLT+LL
Sbjct: 467 KFIDMNPISQMADNLKEGIVECGAMEKDLFLYTLLLYHPKHRTLVFTNSISAVRRLTKLL 526
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVIHYHV 1154
L+ L LH+SM Q+ RL++++RF ++ +IL+ATDVAARGLDI GI VIHYH
Sbjct: 527 QTLQLPALALHSSMAQKARLRSVERFSSPSSDPSTILVATDVAARGLDIKGINLVIHYHA 586
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPID 1208
PRT++ Y+HRSGRTARA G ++++ DE+ +++ + KK+ L +D
Sbjct: 587 PRTADTYVHRSGRTARAGASGKSVIICGPDEMVGVVRLAAKVHANMANGKKLPLESLELD 646
Query: 1209 ESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWL 1241
V+S +K R+ LA I +K K + DNWL
Sbjct: 647 RRVVSRVKPRVSLASRITDANIAKEKISAEDNWL 680
Score = 256 bits (654), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 177/518 (34%), Positives = 259/518 (50%), Gaps = 101/518 (19%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
ED ++ W + I+ L + F +PT +Q +P +L D++G A TGSGKT
Sbjct: 194 EDDGADVSAWDSLGLSPEILTGLSKMKFASPTSVQEACIPQ-ILEGHDVIGKASTGSGKT 252
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFGIPIL + LE++ +++ E E++S + + AL
Sbjct: 253 LAFGIPIL----------------EHYLEKKRDDISAEKEKKSEKDSTPI--------AL 288
Query: 264 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
IL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L+ I++ TPGR+
Sbjct: 289 ILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLSGA-DIVIGTPGRV 347
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
WE + G + ++ +I +LV+DE DR++ GHF E++ IL+ + +E G
Sbjct: 348 WEILSTGQGLIRKMQQIKFLVVDEADRLLSEGHFKEVEEILNAL----------DRVEDG 397
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
P +N ++ S RQT VFSAT L+ L KG+ V S+ L
Sbjct: 398 EVPGGENQA-SEEESDPSSERQTLVFSATFHRDLQQKL-AGKGKWTGGDVMDKKESMDYL 455
Query: 441 QDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
LN + PK +D+ + L E + C EKD +LY +L HP
Sbjct: 456 LQKLNFREEKPKFIDMNPISQMADNLKEGIVECGAMEKDLFLYTLLLYHP---------- 505
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
KH RTLVF NSIS+V+
Sbjct: 506 -----------------------------KH----------------RTLVFTNSISAVR 520
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEH 615
RLT+LL L+ L LH+SM Q+ RL++++RF + ++IL+ATDVAARGLDI GI
Sbjct: 521 RLTKLLQTLQLPALALHSSMAQKARLRSVERFSSPSSDPSTILVATDVAARGLDIKGINL 580
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
VIHYH PRT++ Y+HRSGRTARA G +V++ DE+
Sbjct: 581 VIHYHAPRTADTYVHRSGRTARAGASGKSVIICGPDEM 618
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPIDESVL 1291
D ++HRSGRTARA G ++++ DE+ +++ + KK+ L +D V+
Sbjct: 591 DTYVHRSGRTARAGASGKSVIICGPDEMVGVVRLAAKVHANMANGKKLPLESLELDRRVV 650
Query: 1292 SLIKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDENLIQPN 1340
S +K R+ LA I +K K + DNWL AA+D+ + D E + N
Sbjct: 651 SRVKPRVSLASRITDANIAKEKISAEDNWLRNAAEDLGVEYDSEEFDESN 700
Score = 49.3 bits (116), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L+ I++ TPG
Sbjct: 287 ALILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLSGA-DIVIGTPG 345
>gi|242764605|ref|XP_002340809.1| ATP dependent RNA helicase, putative [Talaromyces stipitatus ATCC
10500]
gi|218724005|gb|EED23422.1| ATP dependent RNA helicase, putative [Talaromyces stipitatus ATCC
10500]
Length = 765
Score = 289 bits (739), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 189/514 (36%), Positives = 273/514 (53%), Gaps = 74/514 (14%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + +L + F TP+ IQ V+P +LA D+VG A TGSGKTLAFGIPIL
Sbjct: 184 WDSLGLSPALQTSLSKLKFSTPSTIQQAVIPE-VLAGHDVVGKASTGSGKTLAFGIPILE 242
Query: 830 ---GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
G + P E+ KK ++ ALIL+PTR
Sbjct: 243 YYLGTRGQHGTPKEK-----------------------------KKKESQPIALILSPTR 273
Query: 887 ELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943
ELA Q+ HI +TP ++A + GG++ +KQ R+L I++ TPGR+WE +
Sbjct: 274 ELAHQLAKHIGTLNSHTPAANARIALLTGGLAIQKQQRLLADA-DIVIGTPGRVWEILSS 332
Query: 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE------------------ 985
G + + ++ YLV+DE DR++ GH+ EL+ ILD + E
Sbjct: 333 GTGLIQRMSRVKYLVLDEADRLLSDGHYKELEEILDALDRKEDNEEAEDSPSESEEDEEK 392
Query: 986 --TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIV 1041
+ RQT VFSAT L+ L+ KG+ S + S++ L L + PK +
Sbjct: 393 EDATVARQTLVFSATFHKGLQQKLS-GKGKFMSSDLMNKSESMEYLLRKLKFREEKPKFI 451
Query: 1042 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTML 1100
D+ + + L E + C +KD YLY +L HP R LVF NSISSV+RL+QLL L
Sbjct: 452 DVNPISQMAQGLKEGILECGAIQKDLYLYTLLLYHPNHRCLVFANSISSVRRLSQLLQNL 511
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
L LH+SM Q+ RL++++RF + +S+L+ATDVAARGLDI GI+ VIHYHVPRT
Sbjct: 512 GIPALALHSSMEQKARLRSVERFSSPDADPSSVLVATDVAARGLDIKGIDMVIHYHVPRT 571
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD---------LPDFPID 1208
+++Y+HRSGRTARA G ++++ DE+ ++ + + + L +D
Sbjct: 572 ADMYVHRSGRTARAGASGKSVLICAPDEVVGVARLVGKVHAQAEAGAPTKRNPLESLELD 631
Query: 1209 ESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
V+S +K R+ LAK I E +K K + DNWL
Sbjct: 632 RRVVSRVKPRMTLAKKITESTLAKEKISSEDNWL 665
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 156/512 (30%), Positives = 239/512 (46%), Gaps = 106/512 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + + +L + F TP+ IQ V+P +LA D+VG A TGSGKTLAFGIPIL
Sbjct: 184 WDSLGLSPALQTSLSKLKFSTPSTIQQAVIPE-VLAGHDVVGKASTGSGKTLAFGIPILE 242
Query: 213 ---GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
G + P E+ KK ++ ALIL+PTR
Sbjct: 243 YYLGTRGQHGTPKEK-----------------------------KKKESQPIALILSPTR 273
Query: 270 ELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326
ELA Q+ HI +TP ++A + GG++ +KQ R+L I++ TPGR+WE +
Sbjct: 274 ELAHQLAKHIGTLNSHTPAANARIALLTGGLAIQKQQRLLADA-DIVIGTPGRVWEILSS 332
Query: 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386
G + + ++ YLV+DE DR++ GH+ EL+ ILD + E ++ +
Sbjct: 333 GTGLIQRMSRVKYLVLDEADRLLSDGHYKELEEILDALDRKEDNEEAEDSPSE------- 385
Query: 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 446
+ + + RQT VFSAT L+ L+ KG+ S + S++ L L
Sbjct: 386 -SEEDEEKEDATVARQTLVFSATFHKGLQQKLS-GKGKFMSSDLMNKSESMEYLLRKLKF 443
Query: 447 KS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
+ PK +D+ + + L E + C +KD YLY +L HP + +++
Sbjct: 444 REEKPKFIDVNPISQMAQGLKEGILECGAIQKDLYLYTLLLYHPNHRCLVFANSISSVR- 502
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
++ L + +GI L +S+ RL
Sbjct: 503 -RLSQLLQNLGIP-----------------------------ALALHSSMEQKARL---- 528
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHV 621
++++RF + +S+L+ATDVAARGLDI GI+ VIHYHV
Sbjct: 529 --------------------RSVERFSSPDADPSSVLVATDVAARGLDIKGIDMVIHYHV 568
Query: 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
PRT+++Y+HRSGRTARA G +V++ DE+
Sbjct: 569 PRTADMYVHRSGRTARAGASGKSVLICAPDEV 600
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD---------LPDFPIDE 1288
D ++HRSGRTARA G ++++ DE+ ++ + + + L +D
Sbjct: 573 DMYVHRSGRTARAGASGKSVLICAPDEVVGVARLVGKVHAQAEAGAPTKRNPLESLELDR 632
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
V+S +K R+ LAK I E +K K + DNWL AA+++ + D E
Sbjct: 633 RVVSRVKPRMTLAKKITESTLAKEKISSEDNWLRNAAEELGVDYDSEEF 681
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI +TP ++A + GG++ +KQ R+L I++ TPG
Sbjct: 266 ALILSPTRELAHQLAKHIGTLNSHTPAANARIALLTGGLAIQKQQRLLADA-DIVIGTPG 324
>gi|407041314|gb|EKE40660.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 600
Score = 288 bits (737), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 174/486 (35%), Positives = 264/486 (54%), Gaps = 54/486 (11%)
Query: 763 MFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
+ ++M +W+K + + IIRALY GF PT+IQ + + AL KDIVG+A TGSGKTL
Sbjct: 56 LMIEMKKWMKLYKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDIVGSAPTGSGKTL 115
Query: 822 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
+F IPI+ ++ E D+ DS +I
Sbjct: 116 SFLIPIVQRLI-------ELDKTDST------------------------------QCVI 138
Query: 882 LAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATPGRLWE- 939
+ PTRELA+Q+ H KY P + V VGGM+ KQ+R+L++ P I++ TPGRL+E
Sbjct: 139 IVPTRELAVQINEHFKKLIKYLPQFTSLVIVGGMAIPKQVRLLSQEPTIVIGTPGRLYEL 198
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+ + H L L +I ++V+DE DR++E GHF + +LD E +QTFVFSAT+
Sbjct: 199 YSETEHNVLQTLPEIPFIVLDEADRLLEKGHFVDFTKLLDIFNNKE----KQTFVFSATM 254
Query: 1000 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 1059
L K S G+ + R+ L + +++D++ + + E K++
Sbjct: 255 I--------LASEMMAKKYSSNGEDELTRMLQKLKLNDAELIDVSTPQQTVEQMEEKKVV 306
Query: 1060 CKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
+D L+Y + PG+TLVF N+I+ +KRL L M+ CS L++ M QRL+
Sbjct: 307 VPSLVRDEALFYILTYMKPGKTLVFVNAITMIKRLVPLFQMIGCSVCSLYSGMEMSQRLR 366
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
N+++F N+ L TDV+ARG+DI ++ VIHY +PRTSE+Y+HRSGRTARA GL +
Sbjct: 367 NIEKFTKGNDIALFTTDVSARGIDIDDVKTVIHYDLPRTSELYVHRSGRTARAGRSGLCI 426
Query: 1179 VLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD 1238
V +E ++ Y + +L+KK D P +D + KK + LA+ I + KK D
Sbjct: 427 VFVEKEDKTPYEHLLKTLKKK-DFPMIKLDAKPYNFAKKILSLARKISNTNQQHKKISND 485
Query: 1239 NWLHRS 1244
L ++
Sbjct: 486 KALKKA 491
Score = 219 bits (558), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 154/511 (30%), Positives = 234/511 (45%), Gaps = 137/511 (26%)
Query: 146 MFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
+ ++M +W+K + + IIRALY GF PT+IQ + + AL KDIVG+A TGSGKTL
Sbjct: 56 LMIEMKKWMKLYKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDIVGSAPTGSGKTL 115
Query: 205 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264
+F IPI+ ++ E D+ DS +I
Sbjct: 116 SFLIPIVQRLI-------ELDKTDST------------------------------QCVI 138
Query: 265 LAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATPGRLWE- 322
+ PTRELA+Q+ H KY P + V VGGM+ KQ+R+L++ P I++ TPGRL+E
Sbjct: 139 IVPTRELAVQINEHFKKLIKYLPQFTSLVIVGGMAIPKQVRLLSQEPTIVIGTPGRLYEL 198
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
+ + H L L +I ++V+DE DR++E GHF + +LD E
Sbjct: 199 YSETEHNVLQTLPEIPFIVLDEADRLLEKGHFVDFTKLLDIFNNKE-------------- 244
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 442
+QTFVFSAT+ L K S G+ + R+
Sbjct: 245 ------------------KQTFVFSATMI--------LASEMMAKKYSSNGEDELTRMLQ 278
Query: 443 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLCEEIQDLLN 501
L + +++D++ + + E K++ +D L+Y + PG+TL
Sbjct: 279 KLKLNDAELIDVSTPQQTVEQMEEKKVVVPSLVRDEALFYILTYMKPGKTLV-------- 330
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLT 561
I + K L P ++ C+
Sbjct: 331 --------FVNAITMIKRLV----------------------PLFQMIGCSV-------- 352
Query: 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621
CS L++ M QRL+N+++F N+ L TDV+ARG+DI ++ VIHY +
Sbjct: 353 -------CS---LYSGMEMSQRLRNIEKFTKGNDIALFTTDVSARGIDIDDVKTVIHYDL 402
Query: 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
PRTSE+Y+HRSGRTARA GL +V +E ++
Sbjct: 403 PRTSELYVHRSGRTARAGRSGLCIVFVEKED 433
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATP 1411
S +I+ PTRELA+Q+ H KY P + V VGGM+ KQ+R+L++ P I++ TP
Sbjct: 133 STQCVIIVPTRELAVQINEHFKKLIKYLPQFTSLVIVGGMAIPKQVRLLSQEPTIVIGTP 192
Query: 1412 GAL 1414
G L
Sbjct: 193 GRL 195
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA GL +V +E ++ Y + +L+KK D P +D + KK +
Sbjct: 409 YVHRSGRTARAGRSGLCIVFVEKEDKTPYEHLLKTLKKK-DFPMIKLDAKPYNFAKKILS 467
Query: 1300 LAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDEN 1335
LA+ I + KK D L+KA + IDD++
Sbjct: 468 LARKISNTNQQHKKISNDKALKKA-----LDIDDQS 498
>gi|156848503|ref|XP_001647133.1| hypothetical protein Kpol_1036p17 [Vanderwaltozyma polyspora DSM
70294]
gi|160409987|sp|A7TEG8.1|MAK5_VANPO RecName: Full=ATP-dependent RNA helicase MAK5
gi|156117817|gb|EDO19275.1| hypothetical protein Kpol_1036p17 [Vanderwaltozyma polyspora DSM
70294]
Length = 763
Score = 287 bits (735), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 183/519 (35%), Positives = 281/519 (54%), Gaps = 81/519 (15%)
Query: 767 MAEWVK--FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+ EW + + T + L + GF PT IQ +P AL +DI+G A TGSGKTLA+G
Sbjct: 189 LPEWTEKVGELSFTTLHGLTKLGFNKPTLIQEEAIPMALKG-EDIMGKASTGSGKTLAYG 247
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPI +E+L + +NT LI P
Sbjct: 248 IPI----------------------------IEKLMKSKSNTAPI---------GLIFTP 270
Query: 885 TRELAIQVQNHILDAGKY----TPVKVACVVGGMSTEKQLRILN--KCPHILVATPGRLW 938
TRELA QV +H+ +P + + GG+S +KQ R+L I+VATPGR
Sbjct: 271 TRELAKQVTDHLRKIASLIVDKSPHAILSLTGGLSIQKQERLLKYEGSGRIVVATPGRFL 330
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR--QTFVFS 996
E I+ + +I+ LV+DE DR+++ GHF E +NIL + ++ QT +FS
Sbjct: 331 ELIEKDKTLVERFSQISTLVLDEADRLLQDGHFDEFENILKYLGRESKNRKHNWQTMIFS 390
Query: 997 ATLTHSLKNSL---NLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKT 1052
AT L + L + K ++ SK ++ + +K L ++ KS P ++D + ++
Sbjct: 391 ATFATDLFDKLSHASWKNMKTPSKNENEMEIVLKHLMTKIHFKSKPILIDANPEDKVSSQ 450
Query: 1053 LTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
+ ES I C E+D + YYF+ +PG+TL+FCN+I SVK+LT L L S +H+SM
Sbjct: 451 IKESLIECAATERDLFCYYFVSMYPGKTLIFCNAIDSVKKLTAYLNNLNISCFQIHSSMT 510
Query: 1113 QRQRLKNLDRFRDQNN--------SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
Q+ RL+NL+R++ Q+ ++L+ +DVAARGLDIPGI+HVIHYH+PRT+++YIHR
Sbjct: 511 QKNRLRNLERYQQQSEKNKILGKPTVLVGSDVAARGLDIPGIQHVIHYHLPRTADVYIHR 570
Query: 1165 SGRTARANNEGLTLVLIESDEI--PLYIKMFNSLEKKVD-------------LPDFPIDE 1209
SGRTARANNEG+++++ +E PL K+ +L K + PID+
Sbjct: 571 SGRTARANNEGVSVMICSPEEAMGPLR-KLRKTLANKSGKDIIMGKKKWQKTVTMLPIDD 629
Query: 1210 SVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLHRSG 1245
++LS +K+R LA + + S ++K+ D W+ ++
Sbjct: 630 TILSQLKERSRLASELADHDLASSSLQKD--DTWMKKAA 666
Score = 252 bits (644), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 169/522 (32%), Positives = 251/522 (48%), Gaps = 138/522 (26%)
Query: 150 MAEWVK--FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+ EW + + T + L + GF PT IQ +P AL +DI+G A TGSGKTLA+G
Sbjct: 189 LPEWTEKVGELSFTTLHGLTKLGFNKPTLIQEEAIPMALKG-EDIMGKASTGSGKTLAYG 247
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IPI+ E+L + +NT LI P
Sbjct: 248 IPII----------------------------EKLMKSKSNTAPI---------GLIFTP 270
Query: 268 TRELAIQVQNHILDAGKY----TPVKVACVVGGMSTEKQLRILN--KCPHILVATPGRLW 321
TRELA QV +H+ +P + + GG+S +KQ R+L I+VATPGR
Sbjct: 271 TRELAKQVTDHLRKIASLIVDKSPHAILSLTGGLSIQKQERLLKYEGSGRIVVATPGRFL 330
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
E I+ + +I+ LV+DE DR+++ GH
Sbjct: 331 ELIEKDKTLVERFSQISTLVLDEADRLLQDGH---------------------------- 362
Query: 382 FPELKNILDRVTMTETSQPR--QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
F E +NIL + ++ QT +FSAT L + L+ +
Sbjct: 363 FDEFENILKYLGRESKNRKHNWQTMIFSATFATDLFDKLSHASWK--------------- 407
Query: 440 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499
N+K+P +K E +I+ KH +
Sbjct: 408 -----NMKTP-----------SKNENEMEIVLKH----------------------LMTK 429
Query: 500 LNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
++ KS P ++D + ++ + ES I C E+D + YYF+ +PG+TL+FCN+I SVK
Sbjct: 430 IHFKSKPILIDANPEDKVSSQIKESLIECAATERDLFCYYFVSMYPGKTLIFCNAIDSVK 489
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN--------SILLATDVAARGLDI 610
+LT L L S +H+SM Q+ RL+NL+R++ Q+ ++L+ +DVAARGLDI
Sbjct: 490 KLTAYLNNLNISCFQIHSSMTQKNRLRNLERYQQQSEKNKILGKPTVLVGSDVAARGLDI 549
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
PGI+HVIHYH+PRT+++YIHRSGRTARANNEG++V++ +E
Sbjct: 550 PGIQHVIHYHLPRTADVYIHRSGRTARANNEGVSVMICSPEE 591
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 21/119 (17%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLYIKMFNSLEKKVD-------------LP 1282
D ++HRSGRTARANNEG+++++ +E PL K+ +L K +
Sbjct: 565 DVYIHRSGRTARANNEGVSVMICSPEEAMGPLR-KLRKTLANKSGKDIIMGKKKWQKTVT 623
Query: 1283 DFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
PID+++LS +K+R LA + + S ++K+ D W++KAA+D+ + ID ++ I+
Sbjct: 624 MLPIDDTILSQLKERSRLASELADHDLASSSLQKD--DTWMKKAAEDLGVDIDSDDEIK 680
>gi|67463088|ref|XP_648201.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56464242|gb|EAL42815.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 600
Score = 287 bits (734), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 173/486 (35%), Positives = 264/486 (54%), Gaps = 54/486 (11%)
Query: 763 MFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
+ ++M +W+K + + IIRALY GF PT+IQ + + AL KDIVG+A TGSGKTL
Sbjct: 56 LMIEMKKWMKLYKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDIVGSAPTGSGKTL 115
Query: 822 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
+F IPI+ ++ E D+ DS +I
Sbjct: 116 SFLIPIVQRLI-------ELDKTDST------------------------------QCVI 138
Query: 882 LAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATPGRLWE- 939
+ PTRELA+Q+ H KY P + V VGGM+ KQ+R+L++ P I++ TPGR++E
Sbjct: 139 IVPTRELAVQINEHFKKLIKYLPQFTSLVIVGGMAIPKQVRLLSQEPTIVIGTPGRIYEL 198
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+ + H L L +I ++V+DE DR++E GHF + +LD E +QTFVFSAT+
Sbjct: 199 YSETEHNVLQTLPEIPFIVLDEADRLLEKGHFVDFTKLLDIFNNKE----KQTFVFSATM 254
Query: 1000 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 1059
L K S G+ + R+ L + +++D++ + + E K++
Sbjct: 255 I--------LASEMMAKKYSSNGEDELTRMLQKLKLNDAELIDISTPQQTVEQMEEKKVV 306
Query: 1060 CKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
+D L+Y + PG+TLVF N+I+ +KRL L M+ CS L++ M QRL+
Sbjct: 307 VPSLVRDEALFYILTYMKPGKTLVFVNAITMIKRLVPLFQMIGCSVCSLYSGMEMSQRLR 366
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
N+++F N+ L TDV+ARG+DI ++ VIHY +PRTSE+Y+HRSGRTARA GL +
Sbjct: 367 NIEKFTKGNDIALFTTDVSARGIDIDDVKTVIHYDLPRTSELYVHRSGRTARAGRSGLCI 426
Query: 1179 VLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD 1238
V +E ++ Y + +L+KK D P +D + KK + LA+ I + KK D
Sbjct: 427 VFVEKEDKTPYEHLLKTLKKK-DFPMIKLDAKPYNFAKKILSLARKISNTNQQHKKISND 485
Query: 1239 NWLHRS 1244
L ++
Sbjct: 486 KALKKA 491
Score = 218 bits (556), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 153/511 (29%), Positives = 234/511 (45%), Gaps = 137/511 (26%)
Query: 146 MFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
+ ++M +W+K + + IIRALY GF PT+IQ + + AL KDIVG+A TGSGKTL
Sbjct: 56 LMIEMKKWMKLYKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDIVGSAPTGSGKTL 115
Query: 205 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264
+F IPI+ ++ E D+ DS +I
Sbjct: 116 SFLIPIVQRLI-------ELDKTDST------------------------------QCVI 138
Query: 265 LAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATPGRLWE- 322
+ PTRELA+Q+ H KY P + V VGGM+ KQ+R+L++ P I++ TPGR++E
Sbjct: 139 IVPTRELAVQINEHFKKLIKYLPQFTSLVIVGGMAIPKQVRLLSQEPTIVIGTPGRIYEL 198
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
+ + H L L +I ++V+DE DR++E GHF + +LD E
Sbjct: 199 YSETEHNVLQTLPEIPFIVLDEADRLLEKGHFVDFTKLLDIFNNKE-------------- 244
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 442
+QTFVFSAT+ L K S G+ + R+
Sbjct: 245 ------------------KQTFVFSATMI--------LASEMMAKKYSSNGEDELTRMLQ 278
Query: 443 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLCEEIQDLLN 501
L + +++D++ + + E K++ +D L+Y + PG+TL
Sbjct: 279 KLKLNDAELIDISTPQQTVEQMEEKKVVVPSLVRDEALFYILTYMKPGKTLV-------- 330
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLT 561
I + K L P ++ C+
Sbjct: 331 --------FVNAITMIKRLV----------------------PLFQMIGCSV-------- 352
Query: 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621
CS L++ M QRL+N+++F N+ L TDV+ARG+DI ++ VIHY +
Sbjct: 353 -------CS---LYSGMEMSQRLRNIEKFTKGNDIALFTTDVSARGIDIDDVKTVIHYDL 402
Query: 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
PRTSE+Y+HRSGRTARA GL +V +E ++
Sbjct: 403 PRTSELYVHRSGRTARAGRSGLCIVFVEKED 433
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATP 1411
S +I+ PTRELA+Q+ H KY P + V VGGM+ KQ+R+L++ P I++ TP
Sbjct: 133 STQCVIIVPTRELAVQINEHFKKLIKYLPQFTSLVIVGGMAIPKQVRLLSQEPTIVIGTP 192
Query: 1412 GAL 1414
G +
Sbjct: 193 GRI 195
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA GL +V +E ++ Y + +L+KK D P +D + KK +
Sbjct: 409 YVHRSGRTARAGRSGLCIVFVEKEDKTPYEHLLKTLKKK-DFPMIKLDAKPYNFAKKILS 467
Query: 1300 LAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDEN 1335
LA+ I + KK D L+KA + IDD++
Sbjct: 468 LARKISNTNQQHKKISNDKALKKA-----LDIDDQS 498
>gi|440638151|gb|ELR08070.1| hypothetical protein GMDG_02897 [Geomyces destructans 20631-21]
Length = 741
Score = 287 bits (734), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 193/501 (38%), Positives = 274/501 (54%), Gaps = 60/501 (11%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
D + +EDM EW + N+ ++ AL + GF TPT IQ +P +L+ D++G A T
Sbjct: 205 DEAEDEDM----TEWAELNLSTAMLSALAKIGFTTPTPIQQEAIPE-VLSGNDVIGKAST 259
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKTLAFGIPI+ + +N EDE T KKT+
Sbjct: 260 GSGKTLAFGIPIIERWLQ--DNEGREDE-----------------------TATEKKTQK 294
Query: 876 KLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
ALIL+PTRELA Q+ +H+ L G +A V GG++ +KQ R L + I++ T
Sbjct: 295 SATALILSPTRELAHQLTDHLTKLCKGLSDAPFIATVTGGLAIQKQQRQLARA-DIIIGT 353
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQ-- 988
PGRLWE + G L + +LV+DE DR++ GHF E + I LDR + +
Sbjct: 354 PGRLWEVLSSGIELSKSLKTLKFLVVDEADRLLTEGHFKEAEEIISKLDRHDADDEEEHV 413
Query: 989 -PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEK 1046
RQT VFSATL L+ L S K GD ++ L L K PK +D+
Sbjct: 414 VTRQTLVFSATLAKGLQQKL--------SGKGRLGDDGMEYLMKKLKFKGEPKFIDVATS 465
Query: 1047 IGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPL 1105
+ + L E I C EKD YLY +L HP +T++F NSI + +RLT LL L P+
Sbjct: 466 -AMAEGLKEGVIECGATEKDLYLYTLLLHHPNLKTIIFTNSIHTAQRLTPLLANLNYFPV 524
Query: 1106 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
LH++M Q+ RL++++RF +S+L+ATDVAARGLD+P +E VIHYH+PR +++Y+HRS
Sbjct: 525 TLHSNMPQKARLRSIERF----SSLLVATDVAARGLDLPAVELVIHYHLPRAADMYVHRS 580
Query: 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKKRIDLAKS 1224
GRTARA +G +++L +E + L KV + ID V +L++ R+ LAK
Sbjct: 581 GRTARAGAQGTSIMLCAPEE----AQSLRRLAGKVGVIRTLDIDRRVAALLRPRVVLAKK 636
Query: 1225 IEYLE-SKIKKNRPDNWLHRS 1244
I +K K R D W ++
Sbjct: 637 IADAGIAKSKGERGDEWARKA 657
Score = 230 bits (587), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 172/517 (33%), Positives = 249/517 (48%), Gaps = 124/517 (23%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
D + +EDM EW + N+ ++ AL + GF TPT IQ +P +L+ D++G A T
Sbjct: 205 DEAEDEDM----TEWAELNLSTAMLSALAKIGFTTPTPIQQEAIPE-VLSGNDVIGKAST 259
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKTLAFGIPI+ + +N EDE T KKT+
Sbjct: 260 GSGKTLAFGIPIIERWLQ--DNEGREDE-----------------------TATEKKTQK 294
Query: 259 KLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
ALIL+PTRELA Q+ +H+ L G +A V GG++ +KQ R L + I++ T
Sbjct: 295 SATALILSPTRELAHQLTDHLTKLCKGLSDAPFIATVTGGLAIQKQQRQLARA-DIIIGT 353
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE + G L + +LV+DE DR++ GHF E + I+ ++ + + +
Sbjct: 354 PGRLWEVLSSGIELSKSLKTLKFLVVDEADRLLTEGHFKEAEEIISKLDRHDADDEEEHV 413
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
+ RQT VFSATL L+ L S K GD
Sbjct: 414 V----------------------TRQTLVFSATLAKGLQQKL--------SGKGRLGDDG 443
Query: 437 IKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
++ L L K PK +D+ + + L E I C EKD YLY +L HP
Sbjct: 444 MEYLMKKLKFKGEPKFIDVATS-AMAEGLKEGVIECGATEKDLYLYTLLLHHP------- 495
Query: 496 IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555
N+K+ + T I + LT +L L YF
Sbjct: 496 -----NLKT---IIFTNSIHTAQRLT--PLLAN-------LNYF---------------- 522
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615
P+ LH++M Q+ RL++++RF +S+L+ATDVAARGLD+P +E
Sbjct: 523 ---------------PVTLHSNMPQKARLRSIERF----SSLLVATDVAARGLDLPAVEL 563
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
VIHYH+PR +++Y+HRSGRTARA +G +++L +E
Sbjct: 564 VIHYHLPRAADMYVHRSGRTARAGAQGTSIMLCAPEE 600
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKK 1296
D ++HRSGRTARA +G +++L +E + L KV + ID V +L++
Sbjct: 574 DMYVHRSGRTARAGAQGTSIMLCAPEEA----QSLRRLAGKVGVIRTLDIDRRVAALLRP 629
Query: 1297 RIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
R+ LAK I +K K R D W KAA+++ + D E+
Sbjct: 630 RVVLAKKIADAGIAKSKGERGDEWARKAAEELGVDYDSEDF 670
Score = 47.4 bits (111), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
ALIL+PTRELA Q+ +H+ L G +A V GG++ +KQ R L + I++ TPG
Sbjct: 298 ALILSPTRELAHQLTDHLTKLCKGLSDAPFIATVTGGLAIQKQQRQLARA-DIIIGTPGR 356
Query: 1414 LS---LKRIDLAKSIEYL 1428
L I+L+KS++ L
Sbjct: 357 LWEVLSSGIELSKSLKTL 374
>gi|330926678|ref|XP_003301562.1| hypothetical protein PTT_13094 [Pyrenophora teres f. teres 0-1]
gi|311323563|gb|EFQ90355.1| hypothetical protein PTT_13094 [Pyrenophora teres f. teres 0-1]
Length = 827
Score = 287 bits (734), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 182/508 (35%), Positives = 269/508 (52%), Gaps = 64/508 (12%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
++ W + + E ++ AL + F PT IQ +P +LA +D++G A TGSGKTLAFGIP
Sbjct: 257 VSAWDELELSEEMLGALAKLKFSKPTTIQKSTIPE-ILAGRDVIGKASTGSGKTLAFGIP 315
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
I+ + + +++ E+ + ALI+APTR
Sbjct: 316 IIESYLASRSSASKDPEDKMPI------------------------------ALIIAPTR 345
Query: 887 ELAIQVQNHILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943
ELA Q+ H++ G + P + + GG+S +KQ R L K I+V TPGRLWE I
Sbjct: 346 ELAHQINAHLIALCAKGDFDPPYITSITGGLSVQKQRRQLEKA-DIVVGTPGRLWEVISD 404
Query: 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-----DRVT--MTETSQP----RQT 992
G L + +I +LV+DE DR+ GHF E+ IL D VT E+ + RQT
Sbjct: 405 GQGLLRKFKQIKFLVVDEADRLFSEGHFKEMGEILKVLEPDDVTDENAESDEKEEIKRQT 464
Query: 993 FVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS---IKRLQDLLNIKSPKIVDLTEKIGI 1049
VFSAT L+ L K S +S+ +K+LQ + P +D +
Sbjct: 465 LVFSATFGKDLQKKLAGKVKGGGSDLMSQQQSMEYLLKKLQ--FREEKPVFIDANPMSQM 522
Query: 1050 TKTLTESKILCKHDEKDSYLY-YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
L E I C EKD YLY I R LVF NSIS+V+R+T LT L LPLH
Sbjct: 523 ASKLQEGLIECAGTEKDLYLYSLLIFYTKKRALVFTNSISAVRRITPFLTNLALPALPLH 582
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
++M Q+ RL++++RF+++ SIL+ATDVAARGLDIP +E VIHYH+PR ++ Y+HRSGRT
Sbjct: 583 SNMPQKARLRSIERFKERPGSILVATDVAARGLDIPRVELVIHYHLPRAADTYVHRSGRT 642
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSLEKKV-DLPD----------FPIDESVLSLIKK 1217
ARA G ++++ +E+ ++ + + D P ID ++S +K
Sbjct: 643 ARAEASGASILICAPEEVAGVRRLVAKVHARASDAPKSKKTAFFIRTLDIDRRIVSRLKP 702
Query: 1218 RIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
R ++K + + + +K KK+ D+ L R+
Sbjct: 703 RATISKRLADTVIAKEKKHSEDDVLRRA 730
Score = 152 bits (385), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLY-YFILQHPGRTLVFCNSISSVKRLTQL 563
P +D + L E I C EKD YLY I R LVF NSIS+V+R+T
Sbjct: 511 PVFIDANPMSQMASKLQEGLIECAGTEKDLYLYSLLIFYTKKRALVFTNSISAVRRITPF 570
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
LT L LPLH++M Q+ RL++++RF+++ SIL+ATDVAARGLDIP +E VIHYH+PR
Sbjct: 571 LTNLALPALPLHSNMPQKARLRSIERFKERPGSILVATDVAARGLDIPRVELVIHYHLPR 630
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEI 653
++ Y+HRSGRTARA G ++++ +E+
Sbjct: 631 AADTYVHRSGRTARAEASGASILICAPEEV 660
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 158/342 (46%), Gaps = 57/342 (16%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
++ W + + E ++ AL + F PT IQ +P +LA +D++G A TGSGKTLAFGIP
Sbjct: 257 VSAWDELELSEEMLGALAKLKFSKPTTIQKSTIPE-ILAGRDVIGKASTGSGKTLAFGIP 315
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
I+ + + +++ E+ + ALI+APTR
Sbjct: 316 IIESYLASRSSASKDPEDKMPI------------------------------ALIIAPTR 345
Query: 270 ELAIQVQNHILD---AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326
ELA Q+ H++ G + P + + GG+S +KQ R L K I+V TPGRLWE I
Sbjct: 346 ELAHQINAHLIALCAKGDFDPPYITSITGGLSVQKQRRQLEKA-DIVVGTPGRLWEVISD 404
Query: 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386
G L + +I +LV+DE DR+ GHF E+ IL + +P E+ E +
Sbjct: 405 GQGLLRKFKQIKFLVVDEADRLFSEGHFKEMGEIL------KVLEPDDVTDENAESDEKE 458
Query: 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS---IKRLQDL 443
I RQT VFSAT L+ L K S +S+ +K+LQ
Sbjct: 459 EI-----------KRQTLVFSATFGKDLQKKLAGKVKGGGSDLMSQQQSMEYLLKKLQ-- 505
Query: 444 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 485
+ P +D + L E I C EKD YLY ++
Sbjct: 506 FREEKPVFIDANPMSQMASKLQEGLIECAGTEKDLYLYSLLI 547
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHIL---DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALI+APTRELA Q+ H++ G + P + + GG+S +KQ R L K I+V TPG
Sbjct: 338 ALIIAPTRELAHQINAHLIALCAKGDFDPPYITSITGGLSVQKQRRQLEKA-DIVVGTPG 396
Query: 1413 AL 1414
L
Sbjct: 397 RL 398
Score = 44.7 bits (104), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV-DLPD----------FPI 1286
D ++HRSGRTARA G ++++ +E+ ++ + + D P I
Sbjct: 633 DTYVHRSGRTARAEASGASILICAPEEVAGVRRLVAKVHARASDAPKSKKTAFFIRTLDI 692
Query: 1287 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIID 1332
D ++S +K R ++K + + + +K KK+ D+ L +AA+D+ + D
Sbjct: 693 DRRIVSRLKPRATISKRLADTVIAKEKKHSEDDVLRRAAEDLGVDYD 739
>gi|449705204|gb|EMD45301.1| ATP-dependent RNA helicase mak5, putative [Entamoeba histolytica
KU27]
Length = 600
Score = 286 bits (733), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 173/486 (35%), Positives = 264/486 (54%), Gaps = 54/486 (11%)
Query: 763 MFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
+ ++M +W+K + + IIRALY GF PT+IQ + + AL KDIVG+A TGSGKTL
Sbjct: 56 LMIEMKKWMKLYKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDIVGSAPTGSGKTL 115
Query: 822 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
+F IPI+ ++ E D+ DS +I
Sbjct: 116 SFLIPIVQRLI-------ELDKTDST------------------------------QCVI 138
Query: 882 LAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATPGRLWE- 939
+ PTRELA+Q+ H KY P + V VGGM+ KQ+R+L++ P I++ TPGR++E
Sbjct: 139 IVPTRELAVQINEHFKKLIKYLPQFTSLVIVGGMAIPKQVRLLSQEPTIVIGTPGRIYEL 198
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+ + H L L +I ++V+DE DR++E GHF + +LD E +QTFVFSAT+
Sbjct: 199 YSETEHNVLQTLPEIPFIVLDEADRLLEKGHFVDFTKLLDIFNNKE----KQTFVFSATM 254
Query: 1000 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 1059
L K S G+ + R+ L + +++D++ + + E K++
Sbjct: 255 I--------LASEMMAKKYSSNGEDELTRMLQKLKLNDAELIDISTPQQTVEQIEEKKVV 306
Query: 1060 CKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
+D L+Y + PG+TLVF N+I+ +KRL L M+ CS L++ M QRL+
Sbjct: 307 VPSLVRDEALFYILTYMKPGKTLVFVNAITMIKRLVPLFQMIGCSVCSLYSGMEMSQRLR 366
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
N+++F N+ L TDV+ARG+DI ++ VIHY +PRTSE+Y+HRSGRTARA GL +
Sbjct: 367 NIEKFTKGNDIALFTTDVSARGIDIDDVKTVIHYDLPRTSELYVHRSGRTARAGRSGLCI 426
Query: 1179 VLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD 1238
V +E ++ Y + +L+KK D P +D + KK + LA+ I + KK D
Sbjct: 427 VFVEKEDKTPYEHLLKTLKKK-DFPMIKLDAKPYNFAKKILSLARKISNTNQQHKKISND 485
Query: 1239 NWLHRS 1244
L ++
Sbjct: 486 KALKKA 491
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 153/511 (29%), Positives = 234/511 (45%), Gaps = 137/511 (26%)
Query: 146 MFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
+ ++M +W+K + + IIRALY GF PT+IQ + + AL KDIVG+A TGSGKTL
Sbjct: 56 LMIEMKKWMKLYKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDIVGSAPTGSGKTL 115
Query: 205 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264
+F IPI+ ++ E D+ DS +I
Sbjct: 116 SFLIPIVQRLI-------ELDKTDST------------------------------QCVI 138
Query: 265 LAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATPGRLWE- 322
+ PTRELA+Q+ H KY P + V VGGM+ KQ+R+L++ P I++ TPGR++E
Sbjct: 139 IVPTRELAVQINEHFKKLIKYLPQFTSLVIVGGMAIPKQVRLLSQEPTIVIGTPGRIYEL 198
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
+ + H L L +I ++V+DE DR++E GHF + +LD E
Sbjct: 199 YSETEHNVLQTLPEIPFIVLDEADRLLEKGHFVDFTKLLDIFNNKE-------------- 244
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 442
+QTFVFSAT+ L K S G+ + R+
Sbjct: 245 ------------------KQTFVFSATMI--------LASEMMAKKYSSNGEDELTRMLQ 278
Query: 443 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLCEEIQDLLN 501
L + +++D++ + + E K++ +D L+Y + PG+TL
Sbjct: 279 KLKLNDAELIDISTPQQTVEQIEEKKVVVPSLVRDEALFYILTYMKPGKTLV-------- 330
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLT 561
I + K L P ++ C+
Sbjct: 331 --------FVNAITMIKRLV----------------------PLFQMIGCSV-------- 352
Query: 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621
CS L++ M QRL+N+++F N+ L TDV+ARG+DI ++ VIHY +
Sbjct: 353 -------CS---LYSGMEMSQRLRNIEKFTKGNDIALFTTDVSARGIDIDDVKTVIHYDL 402
Query: 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
PRTSE+Y+HRSGRTARA GL +V +E ++
Sbjct: 403 PRTSELYVHRSGRTARAGRSGLCIVFVEKED 433
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATP 1411
S +I+ PTRELA+Q+ H KY P + V VGGM+ KQ+R+L++ P I++ TP
Sbjct: 133 STQCVIIVPTRELAVQINEHFKKLIKYLPQFTSLVIVGGMAIPKQVRLLSQEPTIVIGTP 192
Query: 1412 GAL 1414
G +
Sbjct: 193 GRI 195
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA GL +V +E ++ Y + +L+KK D P +D + KK +
Sbjct: 409 YVHRSGRTARAGRSGLCIVFVEKEDKTPYEHLLKTLKKK-DFPMIKLDAKPYNFAKKILS 467
Query: 1300 LAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDEN 1335
LA+ I + KK D L+KA + IDD++
Sbjct: 468 LARKISNTNQQHKKISNDKALKKA-----LDIDDQS 498
>gi|444320517|ref|XP_004180915.1| hypothetical protein TBLA_0E03420 [Tetrapisispora blattae CBS 6284]
gi|387513958|emb|CCH61396.1| hypothetical protein TBLA_0E03420 [Tetrapisispora blattae CBS 6284]
Length = 742
Score = 286 bits (732), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 183/493 (37%), Positives = 276/493 (55%), Gaps = 64/493 (12%)
Query: 771 VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 830
+ F+ ET+ R GF+ PT+IQ +P ++ DI+G A TGSGKTLA+GIPI+
Sbjct: 182 LSFHTLETLSRL----GFQKPTEIQKKSIP-IVMKGTDILGKASTGSGKTLAYGIPII-- 234
Query: 831 IVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAI 890
E++L L+E N T +I PTRELA
Sbjct: 235 ----------------------EKILSNLKEGQLNETS----------GIIFTPTRELAQ 262
Query: 891 QVQNHI---LDAGKYTPVKVACVVGGMSTEKQLRILN---KCPHILVATPGRLWEFIQLG 944
QV H+ + + + + GG+S +KQ RIL I+V+TPGR E I+
Sbjct: 263 QVGRHLNEFVWGDHFNSSSIITITGGLSLQKQERILGYGKGAGQIIVSTPGRFLEIIEKD 322
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILD-----RVTMTETSQPRQTFVFSATL 999
+L KI+ LV+DE DR+I+ GHF E + IL R + E QT V+SAT
Sbjct: 323 EKYLERFSKIDILVLDEADRLIQDGHFEEFERILKLLSNKRRELKEQGY-WQTLVYSATF 381
Query: 1000 THSLKNSLNLKKGQSKSKKVSKG---DPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTE 1055
+ L L+ K + KK+++ D + +L + ++ + P +VD+ + K + E
Sbjct: 382 SLGLFEKLD-KGNKWNKKKLNQEEELDEVVNKLMEKIHFRQKPLVVDIDPFEQMNKQIHE 440
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
+ I C E+D Y+YYF++ + G T+VFCNS++SVKRL LL +LK + L+++M Q+
Sbjct: 441 TLIECGAMERDLYVYYFLIMYGGSTIVFCNSVNSVKRLHDLLKLLKINSFKLNSNMVQKS 500
Query: 1116 RLKNLDRF---RDQNNS--ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
RLK+++ F QNN +L+ATDVAARG+DIP I+HVIHYH PR+++ YIHRSGR AR
Sbjct: 501 RLKSIENFTKASRQNNETVVLIATDVAARGIDIPSIDHVIHYHTPRSADTYIHRSGRAAR 560
Query: 1171 ANNEGLTLVLIESDEIPLYI-KMFNSLEKKVD-LPDFPIDESVLSLIKKRIDLAKSIEYL 1228
+NEG++++L DE L + K+F L+KK + + PID+ +L+ +K+R+ +A I
Sbjct: 561 GSNEGVSVMLTTPDESALSLKKLFAKLDKKQEGIKLLPIDDDILNQLKERVRIASEIVNF 620
Query: 1229 ESKIKKNRPDN-W 1240
E +R +N W
Sbjct: 621 ERGGMHDRKENDW 633
Score = 236 bits (602), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 168/520 (32%), Positives = 251/520 (48%), Gaps = 135/520 (25%)
Query: 154 VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 213
+ F+ ET+ R GF+ PT+IQ +P ++ DI+G A TGSGKTLA+GIPI+
Sbjct: 182 LSFHTLETLSRL----GFQKPTEIQKKSIP-IVMKGTDILGKASTGSGKTLAYGIPII-- 234
Query: 214 IVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAI 273
E++L L+E N T +I PTRELA
Sbjct: 235 ----------------------EKILSNLKEGQLNETS----------GIIFTPTRELAQ 262
Query: 274 QVQNHI---LDAGKYTPVKVACVVGGMSTEKQLRILN---KCPHILVATPGRLWEFIQLG 327
QV H+ + + + + GG+S +KQ RIL I+V+TPGR E I+
Sbjct: 263 QVGRHLNEFVWGDHFNSSSIITITGGLSLQKQERILGYGKGAGQIIVSTPGRFLEIIEKD 322
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
+L KI+ LV+DE DR+I+ GHF E + IL + S R+ + E G++
Sbjct: 323 EKYLERFSKIDILVLDEADRLIQDGHFEEFERILKLL-----SNKRRELKEQGYW----- 372
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG---DPSIKRLQDLL 444
QT V+SAT + L L+ K + KK+++ D + +L + +
Sbjct: 373 --------------QTLVYSATFSLGLFEKLD-KGNKWNKKKLNQEEELDEVVNKLMEKI 417
Query: 445 NIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
+ + P +VD+ + K + E+ I C E+D Y+YYF++ + G T+
Sbjct: 418 HFRQKPLVVDIDPFEQMNKQIHETLIECGAMERDLYVYYFLIMYGGSTI----------- 466
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
+ C NS++SVKRL L
Sbjct: 467 ---------------------VFC------------------------NSVNSVKRLHDL 481
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNS--ILLATDVAARGLDIPGIEHVIH 618
L +LK + L+++M Q+ RLK+++ F QNN +L+ATDVAARG+DIP I+HVIH
Sbjct: 482 LKLLKINSFKLNSNMVQKSRLKSIENFTKASRQNNETVVLIATDVAARGIDIPSIDHVIH 541
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK 658
YH PR+++ YIHRSGR AR +NEG++V+L DE L K
Sbjct: 542 YHTPRSADTYIHRSGRAARGSNEGVSVMLTTPDESALSLK 581
Score = 48.5 bits (114), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 26/135 (19%)
Query: 1356 ALILAPTRELAIQVQNHI---LDAGKYTPVKVACVVGGMSTEKQLRILN---KCPHILVA 1409
+I PTRELA QV H+ + + + + GG+S +KQ RIL I+V+
Sbjct: 251 GIIFTPTRELAQQVGRHLNEFVWGDHFNSSSIITITGGLSLQKQERILGYGKGAGQIIVS 310
Query: 1410 TPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANSREN 1467
TPG +E +E + + +LE+ +K +DI++ DE LIQ + E
Sbjct: 311 TPGRF----------LEIIE------KDEKYLERFSK-IDILVLDEADRLIQD-GHFEEF 352
Query: 1468 ALMSKALVSKRKELQ 1482
+ K L +KR+EL+
Sbjct: 353 ERILKLLSNKRRELK 367
>gi|255724828|ref|XP_002547343.1| hypothetical protein CTRG_01650 [Candida tropicalis MYA-3404]
gi|240135234|gb|EER34788.1| hypothetical protein CTRG_01650 [Candida tropicalis MYA-3404]
Length = 711
Score = 285 bits (729), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 198/546 (36%), Positives = 291/546 (53%), Gaps = 77/546 (14%)
Query: 716 DDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSN-----NEDMFVQMAEW 770
D+Q ++ + Q DEP + + N EL V +N +D + + W
Sbjct: 67 DEQEDEQGDEQKDEPSTAD-----------SDKNGELGIVSFANLDLPLPDDNEINLPIW 115
Query: 771 VKFNIPETI----IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
K ++ +I + L Q GF+ PT IQ +P AL KD++G A TGSGKTLA+GIP
Sbjct: 116 QKGDLGSSISGYTLNGLSQLGFQKPTPIQKETIPIALQG-KDVIGKATTGSGKTLAYGIP 174
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL + L N +++ D K N +I APTR
Sbjct: 175 ILEKYIQSL-NTIKQNNKD--------------------------KKINHPTGIIFAPTR 207
Query: 887 ELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943
ELA QV H+ KY+P+ + + GG+S +KQ R+L P I+VATPGRL E IQ
Sbjct: 208 ELAHQVVEHLNALAKYSPLSTRGIVSITGGLSIQKQQRLLKHGPGIIVATPGRLLELIQ- 266
Query: 944 GHFHLTE-LYKINYLVIDETDRMIESGHFPELKNILD-----RVTMTETSQPRQTFVFSA 997
G L + L + +V+DE DR+++ GHF E + IL+ R T QT VFSA
Sbjct: 267 GDLELCKRLASTDIIVLDEADRLLQDGHFEEFEKILELFGKNRPRNKSTEWKWQTLVFSA 326
Query: 998 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTE 1055
T + L L+ K+ + K+ + D +K L D L K P +VD K ++ +TE
Sbjct: 327 TFSRDLFGKLD-KRQKGKTSSLMHNDEVVKLLNDKLKFKDKKPAMVDANPKEIVSGQITE 385
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
+ + C E+D YLYYF+L + G TLVF NSI SVKRL L L +H+SM Q+Q
Sbjct: 386 ALVECGPTERDLYLYYFLLMYKGSTLVFANSIDSVKRLVPFLNNLNIPAFSIHSSMIQKQ 445
Query: 1116 RLKNLDRFRDQNN----SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
RL+ L++F++ + ++L+A+DVAARGLDIP I+HV+HYH+PR++++YIHRSGRTARA
Sbjct: 446 RLRALEKFKEASEKNEVAVLVASDVAARGLDIPNIDHVVHYHLPRSADVYIHRSGRTARA 505
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSL-----EKKV-------DLPDFPIDESVLSLIKKRI 1219
EG++++ E ++ L EK+ D+ PI+ ++S IK R+
Sbjct: 506 GKEGVSVMFCSPQEASGPLRKLRRLVAANSEKQASRLNMHNDVKLLPIEMDLVSQIKPRV 565
Query: 1220 DLAKSI 1225
D++ +
Sbjct: 566 DISSKL 571
Score = 155 bits (391), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 195/410 (47%), Gaps = 79/410 (19%)
Query: 99 DDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSN-----NEDMFVQMAEW 153
D+Q ++ + Q DEPS+ + N EL V +N +D + + W
Sbjct: 67 DEQEDEQGDEQKDEPSTAD-----------SDKNGELGIVSFANLDLPLPDDNEINLPIW 115
Query: 154 VKFNIPETI----IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
K ++ +I + L Q GF+ PT IQ +P AL KD++G A TGSGKTLA+GIP
Sbjct: 116 QKGDLGSSISGYTLNGLSQLGFQKPTPIQKETIPIALQG-KDVIGKATTGSGKTLAYGIP 174
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL + L N +++ D K N +I APTR
Sbjct: 175 ILEKYIQSL-NTIKQNNKD--------------------------KKINHPTGIIFAPTR 207
Query: 270 ELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326
ELA QV H+ KY+P+ + + GG+S +KQ R+L P I+VATPGRL E IQ
Sbjct: 208 ELAHQVVEHLNALAKYSPLSTRGIVSITGGLSIQKQQRLLKHGPGIIVATPGRLLELIQ- 266
Query: 327 GHFHLTE-LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385
G L + L + +V+DE DR+++ GHF E + IL+ + ++PR
Sbjct: 267 GDLELCKRLASTDIIVLDEADRLLQDGHFEEFEKILE---LFGKNRPRN----------- 312
Query: 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 445
T QT VFSAT + L L+ K+ + K+ + D +K L D L
Sbjct: 313 ---------KSTEWKWQTLVFSATFSRDLFGKLD-KRQKGKTSSLMHNDEVVKLLNDKLK 362
Query: 446 IKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
K P +VD K ++ +TE+ + C E+D YLYYF+L + G TL
Sbjct: 363 FKDKKPAMVDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGSTLV 412
Score = 144 bits (364), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 107/154 (69%), Gaps = 4/154 (2%)
Query: 503 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 562
K P +VD K ++ +TE+ + C E+D YLYYF+L + G TLVF NSI SVKRL
Sbjct: 366 KKPAMVDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGSTLVFANSIDSVKRLVP 425
Query: 563 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN----SILLATDVAARGLDIPGIEHVIH 618
L L +H+SM Q+QRL+ L++F++ + ++L+A+DVAARGLDIP I+HV+H
Sbjct: 426 FLNNLNIPAFSIHSSMIQKQRLRALEKFKEASEKNEVAVLVASDVAARGLDIPNIDHVVH 485
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
YH+PR++++YIHRSGRTARA EG++V+ E
Sbjct: 486 YHLPRSADVYIHRSGRTARAGKEGVSVMFCSPQE 519
Score = 60.5 bits (145), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPG 1412
+I APTRELA QV H+ KY+P+ + + GG+S +KQ R+L P I+VATPG
Sbjct: 200 GIIFAPTRELAHQVVEHLNALAKYSPLSTRGIVSITGGLSIQKQQRLLKHGPGIIVATPG 259
Query: 1413 AL 1414
L
Sbjct: 260 RL 261
Score = 47.8 bits (112), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 26/155 (16%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-----EKKV-------DLPDFP 1285
D ++HRSGRTARA EG++++ E ++ L EK+ D+ P
Sbjct: 493 DVYIHRSGRTARAGKEGVSVMFCSPQEASGPLRKLRRLVAANSEKQASRLNMHNDVKLLP 552
Query: 1286 IDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLEKAAKDM-------------DIII 1331
I+ ++S IK R+D++ + R + +W+E+AA+D+ DII
Sbjct: 553 IEMDLVSQIKPRVDISSKLADGNISATATRKEKSWVEQAAEDLGVDDLSDIDNFEDDIIK 612
Query: 1332 DDENLIQPNQLLIFESRNLRYSWDALILAPTRELA 1366
+ L +++ LRY +L+ AP ++ A
Sbjct: 613 KQRKRKEAKMLSKDQTKVLRYELKSLLAAPIKKNA 647
>gi|67522587|ref|XP_659354.1| hypothetical protein AN1750.2 [Aspergillus nidulans FGSC A4]
gi|74657524|sp|Q5BCI0.1|MAK5_EMENI RecName: Full=ATP-dependent RNA helicase mak5
gi|40744880|gb|EAA64036.1| hypothetical protein AN1750.2 [Aspergillus nidulans FGSC A4]
gi|259487094|tpe|CBF85492.1| TPA: ATP-dependent RNA helicase mak5 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5BCI0] [Aspergillus
nidulans FGSC A4]
Length = 770
Score = 285 bits (728), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 185/513 (36%), Positives = 273/513 (53%), Gaps = 67/513 (13%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
++ W + + +L + F TPT +Q +P +L D++G A TGSGKTLAFG+P
Sbjct: 196 ISAWEPLGLSPETLTSLSKLKFSTPTSVQKSCIP-PILDGHDVIGKASTGSGKTLAFGLP 254
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL + + T + EEE E++ ALIL+PTR
Sbjct: 255 ILEHYLERERRKTIDS------EEEKEKI---------------------PIALILSPTR 287
Query: 887 ELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943
ELA Q+Q HI P + A + GG+S +KQ R+L + I++ TPGR+WE ++
Sbjct: 288 ELAHQLQKHIYGLISNAPGVNARTALLTGGLSVQKQQRLL-ETADIVIGTPGRVWEVLRT 346
Query: 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP-------------- 989
G + + I +LVIDE DR++ GHF E+++IL + E P
Sbjct: 347 GQGLIRRMQGIKFLVIDEADRLLSEGHFKEVEDILSSLDRVEDGGPPDEEDDSSEENVVP 406
Query: 990 ---RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLT 1044
RQT VFSAT L+ L KG+ + S++ L LN + PK +D+
Sbjct: 407 GVERQTLVFSATFHRDLQQKL-AGKGKWTGGDIMNKKESMEYLLQKLNFREEKPKFIDVN 465
Query: 1045 EKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCS 1103
+ + L E + C EKD YLY +L HP RTLVF NSIS+V+R+TQLL L+
Sbjct: 466 PVSQMAEGLKEGIVECPAMEKDLYLYTLLLYHPKHRTLVFTNSISAVRRITQLLQTLQLP 525
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
L LH+SM Q+ RL++++RF +IL+ATDVAARGLDI GI+ VIHYH PRT++
Sbjct: 526 ALALHSSMAQKARLRSVERFSSSTANPGTILVATDVAARGLDIKGIDFVIHYHAPRTADT 585
Query: 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPIDESVLSL 1214
Y+HRSGRTARA G ++++ +E+ +++ + KK+ L +D ++S
Sbjct: 586 YVHRSGRTARAGASGKSVIICSPEEMVGVVRLAAKVHANMANGKKLPLESLELDRRIVSR 645
Query: 1215 IKKRIDLAKSIEYLESKIKKNR---PDNWLHRS 1244
+++R+ LA I +S I K + DNWL +
Sbjct: 646 VRQRVVLAARI--TDSNIAKEKITTEDNWLRNA 676
Score = 252 bits (644), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 251/512 (49%), Gaps = 104/512 (20%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
++ W + + +L + F TPT +Q +P +L D++G A TGSGKTLAFG+P
Sbjct: 196 ISAWEPLGLSPETLTSLSKLKFSTPTSVQKSCIP-PILDGHDVIGKASTGSGKTLAFGLP 254
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL + + T + EEE E++ ALIL+PTR
Sbjct: 255 ILEHYLERERRKTIDS------EEEKEKI---------------------PIALILSPTR 287
Query: 270 ELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326
ELA Q+Q HI P + A + GG+S +KQ R+L + I++ TPGR+WE ++
Sbjct: 288 ELAHQLQKHIYGLISNAPGVNARTALLTGGLSVQKQQRLL-ETADIVIGTPGRVWEVLRT 346
Query: 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386
G + + I +LVIDE DR++ GHF E+++IL + E P +S +
Sbjct: 347 GQGLIRRMQGIKFLVIDEADRLLSEGHFKEVEDILSSLDRVEDGGPPDEEDDSSE----E 402
Query: 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 446
N++ V RQT VFSAT L+ L KG+ + S++ L LN
Sbjct: 403 NVVPGVE-------RQTLVFSATFHRDLQQKL-AGKGKWTGGDIMNKKESMEYLLQKLNF 454
Query: 447 KS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
+ PK +D+ + + L E + C EKD YLY +L HP
Sbjct: 455 REEKPKFIDVNPVSQMAEGLKEGIVECPAMEKDLYLYTLLLYHP---------------- 498
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
KH RTLVF NSIS+V+R+TQLL
Sbjct: 499 -----------------------KH----------------RTLVFTNSISAVRRITQLL 519
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHV 621
L+ L LH+SM Q+ RL++++RF +IL+ATDVAARGLDI GI+ VIHYH
Sbjct: 520 QTLQLPALALHSSMAQKARLRSVERFSSSTANPGTILVATDVAARGLDIKGIDFVIHYHA 579
Query: 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
PRT++ Y+HRSGRTARA G +V++ +E+
Sbjct: 580 PRTADTYVHRSGRTARAGASGKSVIICSPEEM 611
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 11/125 (8%)
Query: 1223 KSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------ 1276
K I+++ D ++HRSGRTARA G ++++ +E+ +++ +
Sbjct: 569 KGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIICSPEEMVGVVRLAAKVHANMANG 628
Query: 1277 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWLEKAAKDMDIIIDD 1333
KK+ L +D ++S +++R+ LA I +S I K + DNWL AA+D+ + D
Sbjct: 629 KKLPLESLELDRRIVSRVRQRVVLAARI--TDSNIAKEKITTEDNWLRNAAEDLGVEYDS 686
Query: 1334 ENLIQ 1338
+ Q
Sbjct: 687 DEFDQ 691
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+Q HI P + A + GG+S +KQ R+L + I++ TPG
Sbjct: 280 ALILSPTRELAHQLQKHIYGLISNAPGVNARTALLTGGLSVQKQQRLL-ETADIVIGTPG 338
>gi|169618601|ref|XP_001802714.1| hypothetical protein SNOG_12492 [Phaeosphaeria nodorum SN15]
gi|118574276|sp|Q0U6X2.1|MAK5_PHANO RecName: Full=ATP-dependent RNA helicase MAK5
gi|111059185|gb|EAT80305.1| hypothetical protein SNOG_12492 [Phaeosphaeria nodorum SN15]
Length = 817
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 176/504 (34%), Positives = 265/504 (52%), Gaps = 63/504 (12%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + I+ +L + F PT IQ+ +P ++A +D++G A TGSGKTLAFGIPI
Sbjct: 251 WEELELSTKILESLAKLKFSKPTTIQASTIPE-IMAGRDVIGKASTGSGKTLAFGIPI-- 307
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+E A+ ++ ALI+APTRELA
Sbjct: 308 -----------------------------IESYLASKSKSKDVKDKTPLALIIAPTRELA 338
Query: 890 IQVQNH---ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
Q+ H + G + +A V GG++ +KQ R L K I+V TPGRLWE I GH
Sbjct: 339 HQITAHLTALCAKGAFEAPLIASVTGGLAVQKQRRQLEKA-DIIVGTPGRLWEVISTGHG 397
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNIL-----------DRVTMTETSQPRQTFVF 995
L ++ +I +LV+DE DR++ G++ EL IL + T RQT VF
Sbjct: 398 LLEKVKQIRFLVVDEADRLLSQGNYKELGEILKILEKDAPAEGEAEAEETTEVERQTLVF 457
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTL 1053
SAT L+ L K +SK S++ L +N + PK +D + L
Sbjct: 458 SATFQKGLQQKLAGKAKGGSDNLMSK-QQSMEYLLKKINFREEKPKFIDANPSSQMASKL 516
Query: 1054 TESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
E I C EKD YLY ++ +P R L+F NSIS+V+RLT L L LPLH+SM
Sbjct: 517 KEGLIECAGTEKDLYLYSLLMFYPKKRALIFTNSISAVRRLTPFLQNLALPALPLHSSMA 576
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q+ RL++++RF+++ SIL+ATDVAARGLDIP +E VIHYH+PR ++ Y+HRSGRTARA
Sbjct: 577 QKARLRSIERFKERPGSILVATDVAARGLDIPKVELVIHYHLPRAADTYVHRSGRTARAE 636
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVD-----------LPDFPIDESVLSLIKKRIDL 1221
G ++++ +E+ ++ + + D + ID +++ +K R +
Sbjct: 637 ASGSSILICAPEEVGGVRRLIAKVHARADEAPKSKKTAYFIRTLDIDRRIVARLKPRASI 696
Query: 1222 AKSI-EYLESKIKKNRPDNWLHRS 1244
+K + + + +K KK+ D+ L ++
Sbjct: 697 SKKLADTVIAKEKKHSEDDTLRQA 720
Score = 227 bits (579), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 186/625 (29%), Positives = 284/625 (45%), Gaps = 143/625 (22%)
Query: 44 QEAENNEEEVEEAEADKEKTEGINVTVSSKK---------KKL-KRKQNPSQVEVSELSA 93
Q + E+V+ E D T NV +S+ K KK+ KR++ + ++ L+
Sbjct: 154 QNGDEQSEDVQMVEEDAPPTP--NVVLSTTKADGDGEAEPKKMNKRERAAEKKRIAALAK 211
Query: 94 NTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEW 153
T PDD DE S K T+ ++L + +++ED V ++ W
Sbjct: 212 KTKKPDD----------DEASEGK---------TFGPGAFDIL-ANRADDEDDEVDVSAW 251
Query: 154 VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 213
+ + I+ +L + F PT IQ+ +P ++A +D++G A TGSGKTLAFGIPI
Sbjct: 252 EELELSTKILESLAKLKFSKPTTIQASTIPE-IMAGRDVIGKASTGSGKTLAFGIPI--- 307
Query: 214 IVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAI 273
+E A+ ++ ALI+APTRELA
Sbjct: 308 ----------------------------IESYLASKSKSKDVKDKTPLALIIAPTRELAH 339
Query: 274 QVQNH---ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
Q+ H + G + +A V GG++ +KQ R L K I+V TPGRLWE I GH
Sbjct: 340 QITAHLTALCAKGAFEAPLIASVTGGLAVQKQRRQLEKA-DIIVGTPGRLWEVISTGHGL 398
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L ++ +I +LV+DE DR++ G++ EL IL ++E + +
Sbjct: 399 LEKVKQIRFLVVDEADRLLSQGNYKELGEIL-------------KILEK----DAPAEGE 441
Query: 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-- 448
T RQT VFSAT L+ L K +SK S++ L +N +
Sbjct: 442 AEAEETTEVERQTLVFSATFQKGLQQKLAGKAKGGSDNLMSK-QQSMEYLLKKINFREEK 500
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508
PK +D + L E I C EKD YLY ++ +P + + +
Sbjct: 501 PKFIDANPSSQMASKLKEGLIECAGTEKDLYLYSLLMFYPKK---------------RAL 545
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 568
T I + LT F +++ L
Sbjct: 546 IFTNSISAVRRLTP---------------------------FLQNLA-----------LP 567
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
PL H+SM Q+ RL++++RF+++ SIL+ATDVAARGLDIP +E VIHYH+PR ++ Y
Sbjct: 568 ALPL--HSSMAQKARLRSIERFKERPGSILVATDVAARGLDIPKVELVIHYHLPRAADTY 625
Query: 629 IHRSGRTARANNEGLTVVLIESDEI 653
+HRSGRTARA G ++++ +E+
Sbjct: 626 VHRSGRTARAEASGSSILICAPEEV 650
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNH---ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALI+APTRELA Q+ H + G + +A V GG++ +KQ R L K I+V TPG
Sbjct: 328 ALIIAPTRELAHQITAHLTALCAKGAFEAPLIASVTGGLAVQKQRRQLEKA-DIIVGTPG 386
Query: 1413 AL 1414
L
Sbjct: 387 RL 388
Score = 46.2 bits (108), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-----------LPDFPI 1286
D ++HRSGRTARA G ++++ +E+ ++ + + D + I
Sbjct: 623 DTYVHRSGRTARAEASGSSILICAPEEVGGVRRLIAKVHARADEAPKSKKTAYFIRTLDI 682
Query: 1287 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
D +++ +K R ++K + + + +K KK+ D+ L +AA+D+ + D E
Sbjct: 683 DRRIVARLKPRASISKKLADTVIAKEKKHSEDDTLRQAAEDLGVDYDSEEF 733
>gi|425778251|gb|EKV16391.1| ATP dependent RNA helicase, putative [Penicillium digitatum Pd1]
gi|425780471|gb|EKV18477.1| ATP dependent RNA helicase, putative [Penicillium digitatum PHI26]
Length = 771
Score = 282 bits (722), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 193/510 (37%), Positives = 273/510 (53%), Gaps = 67/510 (13%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W N+ AL + F +P+ IQ +P A+L D+VG A TGSGKTLAFGIPI+
Sbjct: 194 WDGLNLSPETFTALSKMKFSSPSAIQKASIP-AILDGHDVVGKASTGSGKTLAFGIPIIE 252
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++K +L E+S +T+E K ALIL+PTRELA
Sbjct: 253 HYLDKRG---------------------KLREQS-DTSEQNKSP----IALILSPTRELA 286
Query: 890 IQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
Q+ HI D +P ++A V GGMS +KQ R L I+V TPGR+WE + G
Sbjct: 287 HQLGKHIGDLIANSPDTNARIALVTGGMSIQKQQRQLATA-DIVVGTPGRVWEILSTGTG 345
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS--------------QPRQT 992
+ ++ KI +LV+DE DR++ GHF E+++ILD + + RQT
Sbjct: 346 LIRKMQKIQFLVVDEADRLLSEGHFKEVEDILDALDKHQAGDIADVDQEEEEEQPSHRQT 405
Query: 993 FVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGIT 1050
VFSAT L+ L K + S + S++ L LN + PK +D+ + +
Sbjct: 406 LVFSATFHKDLQQKL-AGKSRWASGDMLDNKASMEYLLKKLNFREEKPKFIDVNPESQMA 464
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA 1109
L E + C EKD YLY +L +P R +VF NSIS+V+R+TQLL L+ LH+
Sbjct: 465 IGLKEGIVECPAMEKDLYLYSVLLYYPKNRIIVFTNSISAVRRITQLLQALQLPVFALHS 524
Query: 1110 SMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166
+M Q+ RL++++RF +SIL+ATDVAARGLDI GI VIHYHVPRT++ Y+HRSG
Sbjct: 525 NMAQKARLRSIERFSSPTANPSSILVATDVAARGLDIKGINCVIHYHVPRTADAYVHRSG 584
Query: 1167 RTARANNEGLTLVLIESDEIPLYIKMF--------------NSLEKKVDLPDFPIDESVL 1212
RTARA G ++++ DE+ ++ + KKV L ID V+
Sbjct: 585 RTARAGESGKSILICAPDEVVGVARLAGKIHAKKAKKADASDGPSKKVPLESLDIDRRVV 644
Query: 1213 SLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
+ ++ R+ LAK I + +K K N DNWL
Sbjct: 645 ARLRPRMALAKRITDSTIAKEKVNTEDNWL 674
Score = 229 bits (584), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 206/653 (31%), Positives = 302/653 (46%), Gaps = 133/653 (20%)
Query: 15 KVKDGGVKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKK 74
K DGGV K K KP K+ VK + E D ++ G + SSKK
Sbjct: 71 KQSDGGVHFKAKSGKPTKSIVKPPS-----------------EDDGDEWSGFSDEDSSKK 113
Query: 75 KKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKE 134
K P+ +V E + + + + + + DE SK+ K K++K + A +
Sbjct: 114 APAAEK-TPAANQVKEDKKSKKN---KKKEQNKAKKDEQKSKEKKPKEQKSKESKPAQNQ 169
Query: 135 LLEVDTS------NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
++ S ED V ++ W N+ AL + F +P+ IQ +P A+L
Sbjct: 170 NIKAGLSFAALDDVEEDDGVDVSAWDGLNLSPETFTALSKMKFSSPSAIQKASIP-AILD 228
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
D+VG A TGSGKTLAFGIPI+ ++K +L E+S +
Sbjct: 229 GHDVVGKASTGSGKTLAFGIPIIEHYLDKRG---------------------KLREQS-D 266
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRI 305
T+E K ALIL+PTRELA Q+ HI D +P ++A V GGMS +KQ R
Sbjct: 267 TSEQNKSP----IALILSPTRELAHQLGKHIGDLIANSPDTNARIALVTGGMSIQKQQRQ 322
Query: 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 365
L I+V TPGR+WE + G + ++ KI +LV+DE DR++ GHF E+++ILD +
Sbjct: 323 LATA-DIVVGTPGRVWEILSTGTGLIRKMQKIQFLVVDEADRLLSEGHFKEVEDILDALD 381
Query: 366 MTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 425
++G + +D+ E RQT VFSAT L+ L K +
Sbjct: 382 KH----------QAGDIAD----VDQEEEEEQPSHRQTLVFSATFHKDLQQKL-AGKSRW 426
Query: 426 KSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 483
S + S++ L LN + PK +D+ + + L E + C EKD YLY
Sbjct: 427 ASGDMLDNKASMEYLLKKLNFREEKPKFIDVNPESQMAIGLKEGIVECPAMEKDLYLYSV 486
Query: 484 ILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 543
+L +P +I+ T I + +T
Sbjct: 487 LLYYPKN---------------RIIVFTNSISAVRRIT---------------------- 509
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLA 600
QLL L+ LH++M Q+ RL++++RF +SIL+A
Sbjct: 510 ------------------QLLQALQLPVFALHSNMAQKARLRSIERFSSPTANPSSILVA 551
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
TDVAARGLDI GI VIHYHVPRT++ Y+HRSGRTARA G ++++ DE+
Sbjct: 552 TDVAARGLDIKGINCVIHYHVPRTADAYVHRSGRTARAGESGKSILICAPDEV 604
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF--------------NSLEKKVDLPD 1283
D ++HRSGRTARA G ++++ DE+ ++ + KKV L
Sbjct: 577 DAYVHRSGRTARAGESGKSILICAPDEVVGVARLAGKIHAKKAKKADASDGPSKKVPLES 636
Query: 1284 FPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
ID V++ ++ R+ LAK I + +K K N DNWL AA D+ + D + Q
Sbjct: 637 LDIDRRVVARLRPRMALAKRITDSTIAKEKVNTEDNWLRAAADDLGVEYDSDEFDQ 692
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI D +P ++A V GGMS +KQ R L I+V TPG
Sbjct: 276 ALILSPTRELAHQLGKHIGDLIANSPDTNARIALVTGGMSIQKQQRQLATA-DIVVGTPG 334
>gi|448091200|ref|XP_004197272.1| Piso0_004519 [Millerozyma farinosa CBS 7064]
gi|448095690|ref|XP_004198303.1| Piso0_004519 [Millerozyma farinosa CBS 7064]
gi|359378694|emb|CCE84953.1| Piso0_004519 [Millerozyma farinosa CBS 7064]
gi|359379725|emb|CCE83922.1| Piso0_004519 [Millerozyma farinosa CBS 7064]
Length = 751
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 199/590 (33%), Positives = 299/590 (50%), Gaps = 67/590 (11%)
Query: 695 KRKQNPSQVEVSELSANTNDPDDQVN----KTEEIQSDEPHSKKLKQKKKKKQTYTSANK 750
K K+ +V +E+SA ND +D + +E+ D S + K+ K S +
Sbjct: 97 KEKKTGDEVTKTEVSATDNDDEDASDFGGFSDDEMDVDGSDSTDVAPIKEAKAKEVSEDS 156
Query: 751 ELLEVDTSN-----NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
EL +N + + + W ++ ++ L Q F PT IQ +P AL
Sbjct: 157 ELTANTFTNLSVTLPDPNSIDLPHWKPLSLSAYTLQGLQQLKFSKPTPIQKKAIPYALEG 216
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
R D VG A TGSGKTLA+GIPIL + +L+ A
Sbjct: 217 R-DTVGKAVTGSGKTLAYGIPILERYLTRLQQ--------------------------AQ 249
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV---KVACVVGGMSTEKQLRI 922
T K + +I APTRELA QV +H+ + KY P + + GG+S +KQ R+
Sbjct: 250 THSKTSKISSPA-GIIFAPTRELAHQVVDHLKELAKYFPFPPNAIVSMTGGLSIQKQERL 308
Query: 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD--- 979
L K P I+V TPGR E +Q ++T+L + +V+DE DR+++ GHF E + L+
Sbjct: 309 LEKGPGIVVTTPGRFLEILQSDEKYVTQLSGCDIVVLDEADRLLQDGHFEEFEKALELLS 368
Query: 980 --RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK- 1036
R S QT V+SAT + L + L+ + ++ SK + LLN K
Sbjct: 369 KSRKNSKAKSWRWQTLVYSATFSKDLFSKLDKNPRRKETFDSSKSLVDNTEIITLLNSKL 428
Query: 1037 -----SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 1091
+P +VD K + +TE+ + C E+D YLYYF+L + G TLVF NSI SVK
Sbjct: 429 KFRDSAPALVDANPKEIVAGQITEALVECGSTERDLYLYYFLLLYSGTTLVFANSIDSVK 488
Query: 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS----ILLATDVAARGLDIPGIE 1147
RL+ L L LH+SM Q+QRL+ L++F++ + + +L+A+DVAARGLDIP I
Sbjct: 489 RLSHFLKNLNIPTFSLHSSMIQKQRLRALEKFKEASTTHETCVLIASDVAARGLDIPNIN 548
Query: 1148 HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL----------- 1196
HV HYH+PR++++YIHRSGRTAR NEG++++ E ++ +L
Sbjct: 549 HVAHYHLPRSADVYIHRSGRTARVGNEGVSVMFCSPQEASGSLRKLRNLVSANASASMKF 608
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHRSG 1245
D+ PID +LS I+K + +A S+ E + + D+WL ++
Sbjct: 609 NTHADVKLLPIDMDILSQIRKPVKIAASLADSEVATTSTKKEDSWLKKAA 658
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 195/591 (32%), Positives = 284/591 (48%), Gaps = 117/591 (19%)
Query: 78 KRKQNPSQVEVSELSANTNDPDDQVN----KTEEIQSDEPSSKKLKQKKKKKQTYTSANK 133
K K+ +V +E+SA ND +D + +E+ D S + K+ K S +
Sbjct: 97 KEKKTGDEVTKTEVSATDNDDEDASDFGGFSDDEMDVDGSDSTDVAPIKEAKAKEVSEDS 156
Query: 134 ELLEVDTSN-----NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
EL +N + + + W ++ ++ L Q F PT IQ +P AL
Sbjct: 157 ELTANTFTNLSVTLPDPNSIDLPHWKPLSLSAYTLQGLQQLKFSKPTPIQKKAIPYALEG 216
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
R D VG A TGSGKTLA+GIPIL + +L+ A
Sbjct: 217 R-DTVGKAVTGSGKTLAYGIPILERYLTRLQQ--------------------------AQ 249
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV---KVACVVGGMSTEKQLRI 305
T K + +I APTRELA QV +H+ + KY P + + GG+S +KQ R+
Sbjct: 250 THSKTSKISSPA-GIIFAPTRELAHQVVDHLKELAKYFPFPPNAIVSMTGGLSIQKQERL 308
Query: 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 365
L K P I+V TPGR E +Q ++T+L + +V+DE DR+++ GHF E + L+ ++
Sbjct: 309 LEKGPGIVVTTPGRFLEILQSDEKYVTQLSGCDIVVLDEADRLLQDGHFEEFEKALELLS 368
Query: 366 MTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 425
+ R S QT V+SAT + L
Sbjct: 369 KS-----------------------RKNSKAKSWRWQTLVYSATFSKDL----------- 394
Query: 426 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 485
SK D + +R + + KS +VD TE I TL SK+ + DS
Sbjct: 395 ----FSKLDKNPRRKETFDSSKS--LVDNTEII----TLLNSKLKFR----DS------- 433
Query: 486 QHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 545
+P +VD K + +TE+ + C E+D YLYYF+L + G
Sbjct: 434 ------------------APALVDANPKEIVAGQITEALVECGSTERDLYLYYFLLLYSG 475
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS----ILLAT 601
TLVF NSI SVKRL+ L L LH+SM Q+QRL+ L++F++ + + +L+A+
Sbjct: 476 TTLVFANSIDSVKRLSHFLKNLNIPTFSLHSSMIQKQRLRALEKFKEASTTHETCVLIAS 535
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DVAARGLDIP I HV HYH+PR++++YIHRSGRTAR NEG++V+ E
Sbjct: 536 DVAARGLDIPNINHVAHYHLPRSADVYIHRSGRTARVGNEGVSVMFCSPQE 586
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPV---KVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+I APTRELA QV +H+ + KY P + + GG+S +KQ R+L K P I+V TPG
Sbjct: 262 GIIFAPTRELAHQVVDHLKELAKYFPFPPNAIVSMTGGLSIQKQERLLEKGPGIVVTTPG 321
>gi|367006707|ref|XP_003688084.1| hypothetical protein TPHA_0M00750 [Tetrapisispora phaffii CBS 4417]
gi|357526391|emb|CCE65650.1| hypothetical protein TPHA_0M00750 [Tetrapisispora phaffii CBS 4417]
Length = 762
Score = 281 bits (720), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 202/613 (32%), Positives = 313/613 (51%), Gaps = 83/613 (13%)
Query: 676 DKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKL 735
D E +DI + ++ L +N ++ ELSA T++ +++ + E+ ++
Sbjct: 92 DDENQDDIQIDENTGIDDLVEFKNMDDIKEGELSAATSESEEEEEEEEDSDNNNEEDSDD 151
Query: 736 KQKKKKKQTYTSANKELLEVDTS-NNEDMFVQMAEW--VKFNIPETIIRALYQKGFKTPT 792
+K + + D + +NE + + EW V ++ T + L F PT
Sbjct: 152 NKKDNINVGDDALKTNVFTSDVNLDNEVSSIDLPEWTNVVGDLSFTTLNGLASLAFTKPT 211
Query: 793 KIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 852
+IQ +P AL +DI+G A TGSGKTLA+GIPIL
Sbjct: 212 EIQMKAIPHALKG-EDIMGKASTGSGKTLAYGIPIL------------------------ 246
Query: 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY----TPVKVA 908
N K NK ALI PTRELA QV H+ K P +
Sbjct: 247 -----------ENLLRTAKVDANKPIALIFTPTRELAQQVTQHLQKISKLIIEKNPYSIL 295
Query: 909 CVVGGMSTEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966
+ GG+S +KQ R+L ++VATPGR E ++ + + KI+ LV+DE DR++
Sbjct: 296 SLTGGLSIQKQQRLLKYKGSGRVVVATPGRFLELLEKDNTLIDRFAKIDTLVLDEADRLL 355
Query: 967 ESGHFPELKNILDRVTMT----ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV--- 1019
+ GHF E +NIL + E + QT +FSAT + L + L K+KK+
Sbjct: 356 QDGHFDEFENILKHLNNANKKMEGTAKWQTMIFSATFSIDLFDK--LASSNWKNKKLDEN 413
Query: 1020 -SKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 1077
S+ + +K L + + KS P I+D + +++ + E+ I C E+D Y YYFI P
Sbjct: 414 ESEMNVVLKHLMNKIQFKSKPVIIDTNPEQKVSEQVKEALIECAPLERDLYSYYFISMFP 473
Query: 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN--------S 1129
G+TL+FCN+I SVK+L LT LK S LH+SM Q+ RLKNL++++ Q+ +
Sbjct: 474 GKTLIFCNAIDSVKKLHSFLTFLKISTFQLHSSMTQKNRLKNLEKYQFQSEKNEKLGKPT 533
Query: 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--P 1187
+L+A+DVAARGLDIP I+HVIHYH+PRT+++YIHRSGRTAR +G+++++ +E P
Sbjct: 534 VLIASDVAARGLDIPDIQHVIHYHLPRTADVYIHRSGRTARGGKQGVSVMICSPEEAIGP 593
Query: 1188 L--YIKMFNSLEKKVDLPDF----------PIDESVLSLIKKRIDLAKSI---EYLESKI 1232
L KM ++ + P F PID VL+ I++R A + + + +
Sbjct: 594 LRKLRKMLDNKSQHSSKPFFKKWQNTVPLLPIDLDVLAQIRERSHCASELADNDIASTSL 653
Query: 1233 KKNRPDNWLHRSG 1245
+K+ D W+ ++
Sbjct: 654 RKD--DVWMKKAA 664
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 175/532 (32%), Positives = 251/532 (47%), Gaps = 139/532 (26%)
Query: 142 NNEDMFVQMAEW--VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
+NE + + EW V ++ T + L F PT+IQ +P AL +DI+G A TG
Sbjct: 176 DNEVSSIDLPEWTNVVGDLSFTTLNGLASLAFTKPTEIQMKAIPHALKG-EDIMGKASTG 234
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKTLA+GIPIL N K NK
Sbjct: 235 SGKTLAYGIPIL-----------------------------------ENLLRTAKVDANK 259
Query: 260 LYALILAPTRELAIQVQNHILDAGKY----TPVKVACVVGGMSTEKQLRILN--KCPHIL 313
ALI PTRELA QV H+ K P + + GG+S +KQ R+L ++
Sbjct: 260 PIALIFTPTRELAQQVTQHLQKISKLIIEKNPYSILSLTGGLSIQKQQRLLKYKGSGRVV 319
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
VATPGR E ++ + + KI+ LV+DE DR+++ GH
Sbjct: 320 VATPGRFLELLEKDNTLIDRFAKIDTLVLDEADRLLQDGH-------------------- 359
Query: 374 QTMIESGHFPELKNILDRVTMT----ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 429
F E +NIL + E + QT +FSAT + L + L K+KK
Sbjct: 360 --------FDEFENILKHLNNANKKMEGTAKWQTMIFSATFSIDLFDKL--ASSNWKNKK 409
Query: 430 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489
+ + + +E ++ KH
Sbjct: 410 LDENE------------------------------SEMNVVLKH---------------- 423
Query: 490 RTLCEEIQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
L +IQ KS P I+D + +++ + E+ I C E+D Y YYFI PG+TL
Sbjct: 424 --LMNKIQ----FKSKPVIIDTNPEQKVSEQVKEALIECAPLERDLYSYYFISMFPGKTL 477
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN--------SILLA 600
+FCN+I SVK+L LT LK S LH+SM Q+ RLKNL++++ Q+ ++L+A
Sbjct: 478 IFCNAIDSVKKLHSFLTFLKISTFQLHSSMTQKNRLKNLEKYQFQSEKNEKLGKPTVLIA 537
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+DVAARGLDIP I+HVIHYH+PRT+++YIHRSGRTAR +G++V++ +E
Sbjct: 538 SDVAARGLDIPDIQHVIHYHLPRTADVYIHRSGRTARGGKQGVSVMICSPEE 589
Score = 46.6 bits (109), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKY----TPVKVACVVGGMSTEKQLRIL--NKCPHILVA 1409
ALI PTRELA QV H+ K P + + GG+S +KQ R+L ++VA
Sbjct: 262 ALIFTPTRELAQQVTQHLQKISKLIIEKNPYSILSLTGGLSIQKQQRLLKYKGSGRVVVA 321
Query: 1410 TPG 1412
TPG
Sbjct: 322 TPG 324
Score = 43.5 bits (101), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 19/117 (16%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PL--YIKMFNSLEKKVDLPDF--------- 1284
D ++HRSGRTAR +G+++++ +E PL KM ++ + P F
Sbjct: 563 DVYIHRSGRTARGGKQGVSVMICSPEEAIGPLRKLRKMLDNKSQHSSKPFFKKWQNTVPL 622
Query: 1285 -PIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLI 1337
PID VL+ I++R A + + + ++K+ D W++KAA ++ I D ++ I
Sbjct: 623 LPIDLDVLAQIRERSHCASELADNDIASTSLRKD--DVWMKKAADELGIDFDSDDEI 677
>gi|408393250|gb|EKJ72515.1| hypothetical protein FPSE_07152 [Fusarium pseudograminearum CS3096]
Length = 781
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 190/520 (36%), Positives = 275/520 (52%), Gaps = 73/520 (14%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
D + ED V MA WV N+ II A+ + F PTKIQ +P ++A D++G A+T
Sbjct: 205 DYKDQED--VDMAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPE-IVAGHDVIGKAQT 261
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKTLAFGIP++ E E++E+ VK+T
Sbjct: 262 GSGKTLAFGIPMV-------------------------ERWLEMQEQG------VKRT-- 288
Query: 876 KLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+L+L+PTRELA Q+ +H+ L G + V V GG+S KQ R L K I++ T
Sbjct: 289 GPMSLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLEKA-DIVIGT 347
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV------------ 981
PGRLWE + ++ KI +LV+DE DR+ + G F E ++I+ +
Sbjct: 348 PGRLWEVLSGDRALQSKFAKIRFLVVDEADRLFKVGQFKEAEDIIGALDGKSPGDDAESE 407
Query: 982 ------TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 1035
+ RQT VFSAT L+ L K K D + L L
Sbjct: 408 EESEDEDEDDEGAARQTLVFSATFDKDLQTKL-----AGKGKSSGNDDEKMAYLMKCLKF 462
Query: 1036 KS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRL 1093
+ PK +D+ + + L E I C EKD YLY ++ +PGR TLVF NSIS+V+RL
Sbjct: 463 RGEPKFIDVNPVSQMAEGLREGLIECGAMEKDLYLYTVLILNPGRRTLVFTNSISAVRRL 522
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
T LLT L + LPLH+ M Q+ R ++L+RF NSIL+ATDVAARGLDI ++ V+HYH
Sbjct: 523 TPLLTNLNLTALPLHSQMAQKARHRSLERFTASRNSILIATDVAARGLDIKEVDQVLHYH 582
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--------PLYIKMFNSLEKKVDLPDF 1205
VPR+++ YIHRSGRTAR + G++++L +E+ ++ + ++++ +
Sbjct: 583 VPRSADTYIHRSGRTARGESSGISVILCAPEEVLPTRRLASKVHAERSAGVKREHFIQTL 642
Query: 1206 PIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
ID S +K R+DLAK I + + +K K + D WL +
Sbjct: 643 MIDRKAASRLKPRVDLAKKIADTILAKEKAHSDDTWLRNA 682
Score = 251 bits (642), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 183/518 (35%), Positives = 256/518 (49%), Gaps = 110/518 (21%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
D + ED V MA WV N+ II A+ + F PTKIQ +P ++A D++G A+T
Sbjct: 205 DYKDQED--VDMAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPE-IVAGHDVIGKAQT 261
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKTLAFGIP++ E E++E+ VK+T
Sbjct: 262 GSGKTLAFGIPMV-------------------------ERWLEMQEQG------VKRT-- 288
Query: 259 KLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+L+L+PTRELA Q+ +H+ L G + V V GG+S KQ R L K I++ T
Sbjct: 289 GPMSLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLEKA-DIVIGT 347
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE + ++ KI +LV+DE DR+ + G F E ++I + + P
Sbjct: 348 PGRLWEVLSGDRALQSKFAKIRFLVVDEADRLFKVGQFKEAEDI---IGALDGKSP---- 400
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
G E + + + RQT VFSAT L+ L G+ KS
Sbjct: 401 ---GDDAESEEESEDEDEDDEGAARQTLVFSATFDKDLQTKL---AGKGKSS-------- 446
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
DEK +YL C +
Sbjct: 447 ----------------------------------GNDDEKMAYLMK----------CLKF 462
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSIS 555
+ PK +D+ + + L E I C EKD YLY ++ +PGR TLVF NSIS
Sbjct: 463 RG-----EPKFIDVNPVSQMAEGLREGLIECGAMEKDLYLYTVLILNPGRRTLVFTNSIS 517
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615
+V+RLT LLT L + LPLH+ M Q+ R ++L+RF NSIL+ATDVAARGLDI ++
Sbjct: 518 AVRRLTPLLTNLNLTALPLHSQMAQKARHRSLERFTASRNSILIATDVAARGLDIKEVDQ 577
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
V+HYHVPR+++ YIHRSGRTAR + G++V+L +E+
Sbjct: 578 VLHYHVPRSADTYIHRSGRTARGESSGISVILCAPEEV 615
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--------PLYIKMFNSLEKKVDLPDFPIDES 1289
D ++HRSGRTAR + G++++L +E+ ++ + ++++ + ID
Sbjct: 588 DTYIHRSGRTARGESSGISVILCAPEEVLPTRRLASKVHAERSAGVKREHFIQTLMIDRK 647
Query: 1290 VLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPN 1340
S +K R+DLAK I + + +K K + D WL AA ++ + D ++L + N
Sbjct: 648 AASRLKPRVDLAKKIADTILAKEKAHSDDTWLRNAADELGVEYDSDDLEEIN 699
Score = 43.5 bits (101), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+L+L+PTRELA Q+ +H+ L G + V V GG+S KQ R L K I++ TPG
Sbjct: 292 SLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLEKA-DIVIGTPGR 350
Query: 1414 L 1414
L
Sbjct: 351 L 351
>gi|296813881|ref|XP_002847278.1| ATP-dependent RNA helicase MAK5 [Arthroderma otae CBS 113480]
gi|238842534|gb|EEQ32196.1| ATP-dependent RNA helicase MAK5 [Arthroderma otae CBS 113480]
Length = 749
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 189/510 (37%), Positives = 273/510 (53%), Gaps = 60/510 (11%)
Query: 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+ W ++ + +L + F PT IQ+ +P +LA +D++G A TGSGKTLAFG+PI
Sbjct: 173 SAWDGLDLRPELQTSLSRLKFSKPTPIQTAAIPD-ILAGRDVIGKAATGSGKTLAFGLPI 231
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L ++N G++ ++E K ALIL+PTRE
Sbjct: 232 LQYLLN-----NNNKHGQGGIKSSSKE--------------------KKPIALILSPTRE 266
Query: 888 LAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
LA Q+ H+ + P +A V GG+S KQ R L I+V TPGRLW+ +
Sbjct: 267 LAHQLVKHLKEVTSSAPNVDAYIASVTGGLSMHKQQRQLLDA-DIIVGTPGRLWDMVSST 325
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS-----------QP--RQ 991
LT+L I +LV+DE DR++ GHF EL +L + +TS +P RQ
Sbjct: 326 PKILTKLRGIKFLVVDEADRLLSEGHFKELGELLSALDKAKTSDDVHGNEDEEDEPVERQ 385
Query: 992 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGI 1049
T VFSAT L+ L K+ +S + S++ L LN K P+ VD+ +
Sbjct: 386 TLVFSATFQKGLQQKLA-KRDKSFHDNLLDKKESMEYLLKKLNFKDEKPRFVDVNPVSQM 444
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
L E I C EKD YLY +L +P RTLVF NSISSV+RLTQ L L L LH
Sbjct: 445 ADNLKEGIIECSAMEKDLYLYAVLLFYPKHRTLVFTNSISSVRRLTQFLQNLGLPALSLH 504
Query: 1109 ASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
+SM Q+ RL++++RF + IL+ATDVAARGLD+ GI+ VIHYHVPR ++ YIHRS
Sbjct: 505 SSMAQKARLRSVERFSSPTTDPSPILIATDVAARGLDMQGIDLVIHYHVPRAADTYIHRS 564
Query: 1166 GRTARANNEGLTLVLIESDEIP----LYIKMFNSLEKKVDLPD-----FPIDESVLSLIK 1216
GRTARA+ G ++++ ++EI L K+ +S ++K D +D +++ ++
Sbjct: 565 GRTARASASGKSILICSAEEIAGVTRLVAKVHHSHKRKSSAKDAQLHSIHLDRGIVTRLR 624
Query: 1217 KRIDLAKSI-EYLESKIKKNRPDNWLHRSG 1245
R L+K I E + +K K + +WL +
Sbjct: 625 PRASLSKKITECVLAKEKVSSESDWLRSAA 654
Score = 253 bits (646), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 183/520 (35%), Positives = 254/520 (48%), Gaps = 112/520 (21%)
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+ W ++ + +L + F PT IQ+ +P +LA +D++G A TGSGKTLAFG+PI
Sbjct: 173 SAWDGLDLRPELQTSLSRLKFSKPTPIQTAAIPD-ILAGRDVIGKAATGSGKTLAFGLPI 231
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L ++N G++ ++E K ALIL+PTRE
Sbjct: 232 LQYLLN-----NNNKHGQGGIKSSSKE--------------------KKPIALILSPTRE 266
Query: 271 LAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
LA Q+ H+ + P +A V GG+S KQ R L I+V TPGRLW+ +
Sbjct: 267 LAHQLVKHLKEVTSSAPNVDAYIASVTGGLSMHKQQRQLLDA-DIIVGTPGRLWDMVSST 325
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
LT+L I +LV+DE DR++ GHF EL +L + +TS + H E
Sbjct: 326 PKILTKLRGIKFLVVDEADRLLSEGHFKELGELLSALDKAKTS-------DDVHGNE--- 375
Query: 388 ILDRVTMTETSQP--RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 445
E +P RQT VFSAT L+ +K++K D S +LL
Sbjct: 376 -------DEEDEPVERQTLVFSATFQKGLQ------------QKLAKRDKSFH--DNLL- 413
Query: 446 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS- 504
D+K+S Y LN K
Sbjct: 414 ----------------------------DKKESMEYLL--------------KKLNFKDE 431
Query: 505 -PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQ 562
P+ VD+ + L E I C EKD YLY +L +P RTLVF NSISSV+RLTQ
Sbjct: 432 KPRFVDVNPVSQMADNLKEGIIECSAMEKDLYLYAVLLFYPKHRTLVFTNSISSVRRLTQ 491
Query: 563 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHY 619
L L L LH+SM Q+ RL++++RF + IL+ATDVAARGLD+ GI+ VIHY
Sbjct: 492 FLQNLGLPALSLHSSMAQKARLRSVERFSSPTTDPSPILIATDVAARGLDMQGIDLVIHY 551
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659
HVPR ++ YIHRSGRTARA+ G ++++ ++EI T+
Sbjct: 552 HVPRAADTYIHRSGRTARASASGKSILICSAEEIAGVTRL 591
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIP----LYIKMFNSLEKKVDLPD-----FPIDE 1288
D ++HRSGRTARA+ G ++++ ++EI L K+ +S ++K D +D
Sbjct: 558 DTYIHRSGRTARASASGKSILICSAEEIAGVTRLVAKVHHSHKRKSSAKDAQLHSIHLDR 617
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+++ ++ R L+K I E + +K K + +WL AA+D+ + D E +
Sbjct: 618 GIVTRLRPRASLSKKITECVLAKEKVSSESDWLRSAAEDLGVDYDSEEFAE 668
Score = 46.2 bits (108), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ + P +A V GG+S KQ R L I+V TPG
Sbjct: 258 ALILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSMHKQQRQLLDA-DIIVGTPG 316
Query: 1413 AL 1414
L
Sbjct: 317 RL 318
>gi|302510172|ref|XP_003017046.1| hypothetical protein ARB_05340 [Arthroderma benhamiae CBS 112371]
gi|291180616|gb|EFE36401.1| hypothetical protein ARB_05340 [Arthroderma benhamiae CBS 112371]
Length = 746
Score = 281 bits (718), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 185/519 (35%), Positives = 272/519 (52%), Gaps = 60/519 (11%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
NE+ + ++ W ++ + +L + F PT IQ +P +L +D++G A TGSGK
Sbjct: 160 NEEADIDVSAWDSLDLRPELQTSLSRLRFAQPTPIQKATIPE-ILGGRDVIGKAATGSGK 218
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879
TLAFG+PIL ++N+ E + + + K K A
Sbjct: 219 TLAFGLPILQCLLNRQE------------------------QRPSTSLALSKSGDKKPIA 254
Query: 880 LILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
LIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPGR
Sbjct: 255 LILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVHKQQRQLAEA-DIIVGTPGR 313
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP------- 989
LW+ + LT+L I +LV+DE DR++ GHF E+ +L + T TS
Sbjct: 314 LWDMVSSTPQILTKLRSIKFLVVDEADRLLSEGHFKEVGELLSALDKTRTSDEDVDEAPE 373
Query: 990 -------RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKI 1040
RQT VFSAT L+ L +K+ S + S++ L L + P+
Sbjct: 374 EEEEPAGRQTLVFSATFQKGLQQKL-VKRDHSFHDNLLDKKESMEYLLKKLRFRDEKPRF 432
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTM 1099
+D+ + L E I C EKD YLY +L +P RTLVF NSISSV+RLT L
Sbjct: 433 IDVNPVSQMADNLKEGIIECSAMEKDLYLYSVLLFYPKHRTLVFTNSISSVRRLTHFLQN 492
Query: 1100 LKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L L LH+SM Q+ RL+ ++RF + IL+ATDVAARGLD+ GI+ VIHYHVPR
Sbjct: 493 LNLPALSLHSSMAQKARLRAVERFSSSTADPSPILIATDVAARGLDMQGIDLVIHYHVPR 552
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIP----LYIKMFNSLEKK-----VDLPDFPI 1207
T++ YIHRSGRTARA+ G ++++ +E L K+ ++ ++K V L +
Sbjct: 553 TADTYIHRSGRTARASASGKSILICAPEETAGVTRLVAKVHHTQKRKTSSKDVQLHSIHL 612
Query: 1208 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRSG 1245
D +++ ++ R +L+K I E +K K + +WL +
Sbjct: 613 DRGIVTRLRPRANLSKKITESALAKEKISSEADWLRSAA 651
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 164/519 (31%), Positives = 234/519 (45%), Gaps = 106/519 (20%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
NE+ + ++ W ++ + +L + F PT IQ +P +L +D++G A TGSGK
Sbjct: 160 NEEADIDVSAWDSLDLRPELQTSLSRLRFAQPTPIQKATIPE-ILGGRDVIGKAATGSGK 218
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262
TLAFG+PIL ++N+ E + + + K K A
Sbjct: 219 TLAFGLPILQCLLNRQE------------------------QRPSTSLALSKSGDKKPIA 254
Query: 263 LILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
LIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPGR
Sbjct: 255 LILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVHKQQRQLAEA-DIIVGTPGR 313
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
LW+ + LT+L I +LV+DE DR++ GHF E+ +L + T TS
Sbjct: 314 LWDMVSSTPQILTKLRSIKFLVVDEADRLLSEGHFKEVGELLSALDKTRTSDEDVDEAP- 372
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
E RQT VFSAT L+ L +K+ S + S++
Sbjct: 373 -------------EEEEEPAGRQTLVFSATFQKGLQQKL-VKRDHSFHDNLLDKKESMEY 418
Query: 440 LQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLCEEI 496
L L + P+ +D+ + L E I C EKD YLY +L +P RTL
Sbjct: 419 LLKKLRFRDEKPRFIDVNPVSQMADNLKEGIIECSAMEKDLYLYSVLLFYPKHRTLV--- 475
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556
T I + LT
Sbjct: 476 -------------FTNSISSVRRLT----------------------------------- 487
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGI 613
L L L LH+SM Q+ RL+ ++RF + IL+ATDVAARGLD+ GI
Sbjct: 488 -----HFLQNLNLPALSLHSSMAQKARLRAVERFSSSTADPSPILIATDVAARGLDMQGI 542
Query: 614 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+ VIHYHVPRT++ YIHRSGRTARA+ G ++++ +E
Sbjct: 543 DLVIHYHVPRTADTYIHRSGRTARASASGKSILICAPEE 581
Score = 49.3 bits (116), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIP----LYIKMFNSLEKK-----VDLPDFPIDE 1288
D ++HRSGRTARA+ G ++++ +E L K+ ++ ++K V L +D
Sbjct: 555 DTYIHRSGRTARASASGKSILICAPEETAGVTRLVAKVHHTQKRKTSSKDVQLHSIHLDR 614
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+++ ++ R +L+K I E +K K + +WL AA+D+ + D E +
Sbjct: 615 GIVTRLRPRANLSKKITESALAKEKISSEADWLRSAAEDLGVDYDSEEFAE 665
Score = 48.1 bits (113), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPG
Sbjct: 254 ALILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVHKQQRQLAEA-DIIVGTPG 312
Query: 1413 AL 1414
L
Sbjct: 313 RL 314
>gi|50305485|ref|XP_452702.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660576|sp|Q6CTN7.1|MAK5_KLULA RecName: Full=ATP-dependent RNA helicase MAK5
gi|49641835|emb|CAH01553.1| KLLA0C11253p [Kluyveromyces lactis]
Length = 796
Score = 281 bits (718), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 193/555 (34%), Positives = 294/555 (52%), Gaps = 97/555 (17%)
Query: 744 TYTSANKELLEVDT-SNNEDMFVQ----MAEWVK-FNIPETIIRALYQKGFKTPTKIQSM 797
T N +LL+ + S+N D+ Q + EW + ++ T+++ L GF PT+IQ
Sbjct: 189 TEDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLK 248
Query: 798 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 857
+P AL +I+G A TGSGKTLA+GIPI +E
Sbjct: 249 SIPLALKGH-NIMGKASTGSGKTLAYGIPI----------------------------IE 279
Query: 858 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDA-------GKYTPVKVACV 910
+L ++++N ++ LI PTRELA QV +H+ KYT + +
Sbjct: 280 QLIKDTSN---------DRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYT---ILSL 327
Query: 911 VGGMSTEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES 968
GG+S +KQ RIL + I+VATPGR E ++ + KI+ LV+DE DR+++
Sbjct: 328 TGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQD 387
Query: 969 GHFPELKNILD----------RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
GHF E + IL + T QT +FSAT + L L+ K K K
Sbjct: 388 GHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLD--KTSWKILK 445
Query: 1019 VSKGDPS-----IKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
+ G+ + + L + KS P I+D + +T + ES I C E+D Y+YYF
Sbjct: 446 TAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYF 505
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---- 1128
I+ +PG TLVFCN+I SVK+L L LK S +H+SM Q+ RL+NL++F++Q+
Sbjct: 506 IMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSK 565
Query: 1129 ----SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+IL+A+DVAARGLDI GI+HV+HYH+PR++++YIHRSGRTAR +NEG+++++
Sbjct: 566 VGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQ 625
Query: 1185 EI--PLYIKMFNSLEKKV-----------DLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
E PL K+ L K D+P P++ ++S +++R +A + E
Sbjct: 626 ESMGPLR-KLRKVLSTKKSSNPRKTKWQNDVPMLPLEPDIVSQLRERSKIASELADDEIA 684
Query: 1232 IKK-NRPDNWLHRSG 1245
K ++ DNWL ++
Sbjct: 685 TKSLHKDDNWLKKAA 699
Score = 243 bits (619), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 182/560 (32%), Positives = 268/560 (47%), Gaps = 156/560 (27%)
Query: 127 TYTSANKELLEVDT-SNNEDMFVQ----MAEWVK-FNIPETIIRALYQKGFKTPTKIQSM 180
T N +LL+ + S+N D+ Q + EW + ++ T+++ L GF PT+IQ
Sbjct: 189 TEDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLK 248
Query: 181 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 240
+P AL +I+G A TGSGKTLA+GIPI+ E
Sbjct: 249 SIPLALKGH-NIMGKASTGSGKTLAYGIPII----------------------------E 279
Query: 241 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDA-------GKYTPVKVACV 293
+L ++++N ++ LI PTRELA QV +H+ KYT + +
Sbjct: 280 QLIKDTSN---------DRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYT---ILSL 327
Query: 294 VGGMSTEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES 351
GG+S +KQ RIL + I+VATPGR E ++ + KI+ LV+DE DR+++
Sbjct: 328 TGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQD 387
Query: 352 GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD----------RVTMTETSQPR 401
GHF E + IL + T
Sbjct: 388 ----------------------------GHFDEFEKILKLLGKARKIKTSIDGKPTGSGW 419
Query: 402 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
QT +FSA T SL L K K K + G+ + ++ +LN
Sbjct: 420 QTMIFSA--TFSLDLFTKLDKTSWKILKTAGGENN--EMEQVLN---------------- 459
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS-PKIVDLTEKIGITKTL 520
L ++IQ KS P I+D + +T +
Sbjct: 460 -----------------------------HLMKKIQ----FKSKPVIIDTNPEHKVTSQV 486
Query: 521 TESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 580
ES I C E+D Y+YYFI+ +PG TLVFCN+I SVK+L L LK S +H+SM Q
Sbjct: 487 KESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQ 546
Query: 581 RQRLKNLDRFRDQNN--------SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
+ RL+NL++F++Q+ +IL+A+DVAARGLDI GI+HV+HYH+PR++++YIHRS
Sbjct: 547 KNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRS 606
Query: 633 GRTARANNEGLTVVLIESDE 652
GRTAR +NEG++V++ E
Sbjct: 607 GRTARGDNEGVSVMICSPQE 626
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 27/153 (17%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLYIKMFNSLEKKV-----------DLPDF 1284
D ++HRSGRTAR +NEG+++++ E PL K+ L K D+P
Sbjct: 600 DVYIHRSGRTARGDNEGVSVMICSPQESMGPLR-KLRKVLSTKKSSNPRKTKWQNDVPML 658
Query: 1285 PIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDE-----NLIQ 1338
P++ ++S +++R +A + E K ++ DNWL+KAA+++DI +D E +
Sbjct: 659 PLEPDIVSQLRERSKIASELADDEIATKSLHKDDNWLKKAAEELDIELDSEEEEKDQFLA 718
Query: 1339 PN-------QLLIFESRNLRYSWDALILAPTRE 1364
N QL E++ L+Y + L+ P R+
Sbjct: 719 RNKTKKLNKQLEKNENKALKYQLNELLKMPLRK 751
Score = 45.4 bits (106), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 1356 ALILAPTRELAIQVQNHILDA-------GKYTPVKVACVVGGMSTEKQLRIL--NKCPHI 1406
LI PTRELA QV +H+ KYT + + GG+S +KQ RIL + I
Sbjct: 292 GLIFTPTRELAHQVTDHLQKVWTKMNKLNKYT---ILSLTGGLSIQKQERILKYDGSGRI 348
Query: 1407 LVATPG 1412
+VATPG
Sbjct: 349 IVATPG 354
>gi|115400477|ref|XP_001215827.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191493|gb|EAU33193.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 791
Score = 281 bits (718), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 188/532 (35%), Positives = 277/532 (52%), Gaps = 83/532 (15%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
ED V ++ W + I+ +L + F +PT +Q +P +L D+VG A TGSGKT
Sbjct: 195 EDDGVDISAWESLGLSPEILNSLSKLKFSSPTAVQKSCIPP-ILDGHDVVGKASTGSGKT 253
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFGIPIL E LE+ E+ N + K AL
Sbjct: 254 LAFGIPIL------------------------EYYLEKKRRETKNKDD---KKETSPIAL 286
Query: 881 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
IL+PTRELA Q+ HI + + P ++A + GG+S +KQ R+LN I++ TPGR+
Sbjct: 287 ILSPTRELAHQLVKHIGEVITHAPGVNARIALLTGGLSVQKQQRLLNGA-DIVIGTPGRV 345
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ--------- 988
WE + G ++++ +I YLV+DE DR++ GHF E IL + E +
Sbjct: 346 WEVLSGGQGLISKMKEIKYLVVDEADRLLSEGHFKEAHEILAALDREEINDFPGAEEDES 405
Query: 989 -------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PK 1039
RQT VFSAT L+ L K + S ++K + S++ L LN + PK
Sbjct: 406 DDEDSKTQRQTLVFSATFHRDLQQKLAGKGKWTGSDLMNKQE-SMEYLLKKLNFREEKPK 464
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEK----DSYLYYFIL-------------QHPG-RTL 1081
+D+ + + L E + C EK D+ F L HP RTL
Sbjct: 465 FIDVNPVSQMAEGLKEGIVECAAMEKVQSADTLSMDFTLTLFQDLYLYTLLLYHPKHRTL 524
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAA 1138
VF NSIS+V+RLTQ L L+ L LH+SM Q+ RL++++RF ++IL+ATDVAA
Sbjct: 525 VFTNSISAVRRLTQFLQALQLPALALHSSMAQKARLRSVERFSSPTADPSTILVATDVAA 584
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE- 1197
RGLDI GI+ VIHYH PRT++ Y+HRSGRTARA G ++++ +E+ +++ +
Sbjct: 585 RGLDIKGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIICAPEEMVGVVRLAAKVHA 644
Query: 1198 -----KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWL 1241
K++ L +D ++S +K+R+ LA I ++ I K + DNWL
Sbjct: 645 NMANGKRLPLESLELDRRIVSRVKQRVTLAARI--CDANIAKEKVSAEDNWL 694
Score = 258 bits (659), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 183/519 (35%), Positives = 263/519 (50%), Gaps = 90/519 (17%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
ED V ++ W + I+ +L + F +PT +Q +P +L D+VG A TGSGKT
Sbjct: 195 EDDGVDISAWESLGLSPEILNSLSKLKFSSPTAVQKSCIPP-ILDGHDVVGKASTGSGKT 253
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFGIPIL E LE+ E+ N + K AL
Sbjct: 254 LAFGIPIL------------------------EYYLEKKRRETKNKDD---KKETSPIAL 286
Query: 264 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
IL+PTRELA Q+ HI + + P ++A + GG+S +KQ R+LN I++ TPGR+
Sbjct: 287 ILSPTRELAHQLVKHIGEVITHAPGVNARIALLTGGLSVQKQQRLLNGA-DIVIGTPGRV 345
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
WE + G ++++ +I YLV+DE DR++ GHF E IL + E +
Sbjct: 346 WEVLSGGQGLISKMKEIKYLVVDEADRLLSEGHFKEAHEILAALDREEIND--------- 396
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
FP + ++T RQT VFSAT L+ L K + S ++K + S++ L
Sbjct: 397 -FPGAEEDESDDEDSKTQ--RQTLVFSATFHRDLQQKLAGKGKWTGSDLMNKQE-SMEYL 452
Query: 441 QDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
LN + PK +D+ + + L E + C EK
Sbjct: 453 LKKLNFREEKPKFIDVNPVSQMAEGLKEGIVECAAMEK---------------------- 490
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSV 557
V + + + TLT +D YLY +L HP RTLVF NSIS+V
Sbjct: 491 ---------VQSADTLSMDFTLTLF--------QDLYLYTLLLYHPKHRTLVFTNSISAV 533
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIE 614
+RLTQ L L+ L LH+SM Q+ RL++++RF ++IL+ATDVAARGLDI GI+
Sbjct: 534 RRLTQFLQALQLPALALHSSMAQKARLRSVERFSSPTADPSTILVATDVAARGLDIKGID 593
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
VIHYH PRT++ Y+HRSGRTARA G +V++ +E+
Sbjct: 594 FVIHYHAPRTADTYVHRSGRTARAGASGKSVIICAPEEM 632
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 1223 KSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------ 1276
K I+++ D ++HRSGRTARA G ++++ +E+ +++ +
Sbjct: 590 KGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIICAPEEMVGVVRLAAKVHANMANG 649
Query: 1277 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWLEKAAKDMDIIIDD 1333
K++ L +D ++S +K+R+ LA I ++ I K + DNWL+ AA+++ + D
Sbjct: 650 KRLPLESLELDRRIVSRVKQRVTLAARI--CDANIAKEKVSAEDNWLKNAAEELGVDYDS 707
Query: 1334 ENL 1336
E
Sbjct: 708 EEF 710
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI + + P ++A + GG+S +KQ R+LN I++ TPG
Sbjct: 285 ALILSPTRELAHQLVKHIGEVITHAPGVNARIALLTGGLSVQKQQRLLNGA-DIVIGTPG 343
>gi|121699618|ref|XP_001268081.1| ATP dependent RNA helicase, putative [Aspergillus clavatus NRRL 1]
gi|143345189|sp|A1CTL8.1|MAK5_ASPCL RecName: Full=ATP-dependent RNA helicase mak5
gi|119396223|gb|EAW06655.1| ATP dependent RNA helicase, putative [Aspergillus clavatus NRRL 1]
Length = 774
Score = 280 bits (716), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 187/516 (36%), Positives = 272/516 (52%), Gaps = 64/516 (12%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
ED V ++ W N+ ++ + + F +PT +Q+ +P +L D+VG A TGSGKT
Sbjct: 191 EDDGVDVSAWDALNLSTELLTGISKMKFTSPTAVQAACIPH-ILDGHDVVGKASTGSGKT 249
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFGIPIL E LE+ + + K + AL
Sbjct: 250 LAFGIPIL------------------------EHYLEKNRDGHGDIIGKKDKKDSTPIAL 285
Query: 881 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
IL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L I++ TPGR+
Sbjct: 286 ILSPTRELAHQLAKHIGELVTQAPGVNARIALLTGGLSVQKQQRLLAGA-DIVIGTPGRV 344
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTET-------- 986
WE + G + ++ KI +LV+DE DR++ GHF E++ I LDRV +
Sbjct: 345 WEIMSTGQGLIRKMQKIKFLVVDEADRLLSEGHFKEVEEIIGALDRVEDGDVLDEEDEAP 404
Query: 987 ------SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--P 1038
RQT VFSAT L+ L KG+ + S+ L LN + P
Sbjct: 405 EEESDPRSERQTLVFSATFHRDLQQKL-AGKGKWTGGDIMNKKESMDYLLQKLNFREEKP 463
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLL 1097
K +D + + L E + C EKD +LY +L HP RTLVF NSIS+V+RL QLL
Sbjct: 464 KFIDTNPVSQMAENLKEGIVECGAMEKDLFLYTLLLYHPKHRTLVFTNSISAVRRLAQLL 523
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHV 1154
L+ L LH+SM Q+ RL++++RF +IL+ATDVAARGLDI GI+ VIHYH
Sbjct: 524 QALQLPALALHSSMAQKARLRSVERFSSPTANPGTILIATDVAARGLDIKGIDLVIHYHA 583
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPID 1208
PRT++ Y+HRSGRTARA G ++++ DE+ +++ + K++ L +D
Sbjct: 584 PRTADTYVHRSGRTARAGASGKSVIICGPDEMVGVVRLAAKVHANMANGKRLPLESLELD 643
Query: 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWL 1241
V+ +K R+ LA I +++ I K + DNWL
Sbjct: 644 RRVVGRVKPRVSLASRI--VDANIAKEKISSEDNWL 677
Score = 246 bits (627), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 177/521 (33%), Positives = 247/521 (47%), Gaps = 107/521 (20%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
ED V ++ W N+ ++ + + F +PT +Q+ +P +L D+VG A TGSGKT
Sbjct: 191 EDDGVDVSAWDALNLSTELLTGISKMKFTSPTAVQAACIPH-ILDGHDVVGKASTGSGKT 249
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFGIPIL E LE+ + + K + AL
Sbjct: 250 LAFGIPIL------------------------EHYLEKNRDGHGDIIGKKDKKDSTPIAL 285
Query: 264 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
IL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L I++ TPGR+
Sbjct: 286 ILSPTRELAHQLAKHIGELVTQAPGVNARIALLTGGLSVQKQQRLLAGA-DIVIGTPGRV 344
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQPRQTMI 377
WE + G + ++ KI +LV+DE DR++ GHF E++ I LDRV +
Sbjct: 345 WEIMSTGQGLIRKMQKIKFLVVDEADRLLSEGHFKEVEEIIGALDRVEDGDVLDEEDEAP 404
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
E P RQT VFSAT L+ L KG+ + S+
Sbjct: 405 EEESDPR--------------SERQTLVFSATFHRDLQQKL-AGKGKWTGGDIMNKKESM 449
Query: 438 KRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
L LN + PK +D + + L E + C EKD +LY +L HP
Sbjct: 450 DYLLQKLNFREEKPKFIDTNPVSQMAENLKEGIVECGAMEKDLFLYTLLLYHP------- 502
Query: 496 IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555
KH RTLVF NSIS
Sbjct: 503 --------------------------------KH----------------RTLVFTNSIS 514
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPG 612
+V+RL QLL L+ L LH+SM Q+ RL++++RF +IL+ATDVAARGLDI G
Sbjct: 515 AVRRLAQLLQALQLPALALHSSMAQKARLRSVERFSSPTANPGTILIATDVAARGLDIKG 574
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
I+ VIHYH PRT++ Y+HRSGRTARA G +V++ DE+
Sbjct: 575 IDLVIHYHAPRTADTYVHRSGRTARAGASGKSVIICGPDEM 615
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPIDESVL 1291
D ++HRSGRTARA G ++++ DE+ +++ + K++ L +D V+
Sbjct: 588 DTYVHRSGRTARAGASGKSVIICGPDEMVGVVRLAAKVHANMANGKRLPLESLELDRRVV 647
Query: 1292 SLIKKRIDLAKSIEYLESKIKKNR---PDNWLEKAAKDMDIIIDDENL 1336
+K R+ LA I +++ I K + DNWL AA+D+ + D E
Sbjct: 648 GRVKPRVSLASRI--VDANIAKEKISSEDNWLRNAAEDLGVEYDSEEF 693
Score = 48.1 bits (113), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 284 ALILSPTRELAHQLAKHIGELVTQAPGVNARIALLTGGLSVQKQQRLLAGA-DIVIGTPG 342
>gi|254574120|ref|XP_002494169.1| Essential nucleolar protein, putative DEAD-box RNA helicase
[Komagataella pastoris GS115]
gi|238033968|emb|CAY71990.1| Essential nucleolar protein, putative DEAD-box RNA helicase
[Komagataella pastoris GS115]
gi|328354012|emb|CCA40409.1| similar to ATP-dependent RNA helicase [Komagataella pastoris CBS
7435]
Length = 758
Score = 280 bits (715), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 168/460 (36%), Positives = 256/460 (55%), Gaps = 60/460 (13%)
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
GF PT IQ+ +P A+ + KDI+G A TGSGKTLA+GIP++
Sbjct: 214 GFNEPTPIQNEAIPLAI-SGKDIIGKAITGSGKTLAYGIPLI------------------ 254
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKL---YALILAPTRELAIQVQNHILDAGKYT 903
E+ L +++R+K ++ APTRELA QV H+ + K +
Sbjct: 255 ------EKYL-------------TRESRSKQAPPAGIVFAPTRELAHQVVKHLKEIAKDS 295
Query: 904 PV---KVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
P+ V V GG+S ++Q R+L+ P I+VATPGR E ++ + T L + LV+D
Sbjct: 296 PLTEHGVISVTGGLSIQRQQRLLDYGPGIIVATPGRFLELLESSNELATRLASVEVLVLD 355
Query: 961 ETDRMIESGHFPELKNILDRVTMTETS--QPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
E DR+++ GHF EL+ IL + Q QT VFSAT + L L K ++ +
Sbjct: 356 EADRLLQDGHFDELEKILSSLKKMRPHNIQRWQTLVFSATFSKELFGKLGSKYRWNEDQG 415
Query: 1019 VSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 1077
+++ + I+ L L + P +VD +T + E+ I C E+D +LYYF++ +P
Sbjct: 416 LAEDEQIIELLGKRLRFRQKPTLVDTNPTEVVTNQVREALIECGATERDLHLYYFMMMYP 475
Query: 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF----RDQNNSILLA 1133
G TLVF NSI +V+RL L L LH+SM Q+QRL+ ++RF + +++L+A
Sbjct: 476 GTTLVFANSIDAVRRLVPFLQNLGIPAFGLHSSMIQKQRLRAIERFTQASKSNKHAVLIA 535
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PLYIK 1191
TDVAARGLDI GI+HV+HYH+PRT++ Y+HR+GRT RA EG+ ++L E PL +
Sbjct: 536 TDVAARGLDISGIQHVVHYHLPRTADTYVHRTGRTGRAGKEGVAVILCSPKEASGPLR-R 594
Query: 1192 MFNSLEKKV------DLPDFPIDESVLSLIKKRIDLAKSI 1225
+ +L K ++ PID++++S + R+ LA +
Sbjct: 595 LKRALAKTAHKKHTEEIQLLPIDQAIMSQLNPRVQLAAQL 634
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 166/577 (28%), Positives = 271/577 (46%), Gaps = 141/577 (24%)
Query: 105 TEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN---IPET 161
TE++ P K K+ K+K +++ +++ + +E + ++ KF+ +PE
Sbjct: 133 TEKVPESTPGVKSNKKVKRKDVKEVKKDEDQEDLEDAGSEQVPMEEDGHFKFSQMKMPED 192
Query: 162 IIRALYQKG-------------FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
+ L+ +G F PT IQ+ +P A+ + KDI+G A TGSGKTLA+GI
Sbjct: 193 VDLPLWPEGLSPFVRQSLSILGFNEPTPIQNEAIPLAI-SGKDIIGKAITGSGKTLAYGI 251
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL---YALIL 265
P++ E+ L +++R+K ++
Sbjct: 252 PLI------------------------EKYL-------------TRESRSKQAPPAGIVF 274
Query: 266 APTRELAIQVQNHILDAGKYTPV---KVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
APTRELA QV H+ + K +P+ V V GG+S ++Q R+L+ P I+VATPGR E
Sbjct: 275 APTRELAHQVVKHLKEIAKDSPLTEHGVISVTGGLSIQRQQRLLDYGPGIIVATPGRFLE 334
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ + T L + LV+DE DR+++ GHF EL+ IL + + +P
Sbjct: 335 LLESSNELATRLASVEVLVLDEADRLLQDGHFDELEKILSSL---KKMRPH--------- 382
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 442
NI Q QT VFSAT + L L K ++ + +++ + I+ L
Sbjct: 383 ----NI----------QRWQTLVFSATFSKELFGKLGSKYRWNEDQGLAEDEQIIELLGK 428
Query: 443 LLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLN 501
L + P +VD +T + E+ I C E+D +LYYF++ +PG TL + ++
Sbjct: 429 RLRFRQKPTLVDTNPTEVVTNQVREALIECGATERDLHLYYFMMMYPGTTLV--FANSID 486
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLT 561
++V + +GI S ++ K + +++R T
Sbjct: 487 AVR-RLVPFLQNLGIPAFGLHSSMIQKQ-----------------------RLRAIERFT 522
Query: 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621
Q AS + + +++L+ATDVAARGLDI GI+HV+HYH+
Sbjct: 523 Q-------------ASKSNK-------------HAVLIATDVAARGLDISGIQHVVHYHL 556
Query: 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDEI--PLK 656
PRT++ Y+HR+GRT RA EG+ V+L E PL+
Sbjct: 557 PRTADTYVHRTGRTGRAGKEGVAVILCSPKEASGPLR 593
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPV---KVACVVGGMSTEKQLRI 1399
L ESR+ + ++ APTRELA QV H+ + K +P+ V V GG+S ++Q R+
Sbjct: 258 LTRESRSKQAPPAGIVFAPTRELAHQVVKHLKEIAKDSPLTEHGVISVTGGLSIQRQQRL 317
Query: 1400 LNKCPHILVATPG 1412
L+ P I+VATPG
Sbjct: 318 LDYGPGIIVATPG 330
Score = 42.7 bits (99), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 12/115 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLYIKMFNSLEKKV------DLPDFPIDES 1289
D ++HR+GRT RA EG+ ++L E PL ++ +L K ++ PID++
Sbjct: 561 DTYVHRTGRTGRAGKEGVAVILCSPKEASGPLR-RLKRALAKTAHKKHTEEIQLLPIDQA 619
Query: 1290 VLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDENLIQPNQLL 1343
++S + R+ LA + R + +W+ AA+++ +DD + +Q + L
Sbjct: 620 IMSQLNPRVQLAAQLADATVTSDGARKEKDWVRLAAEELG--VDDLDNLQEDDYL 672
>gi|302659739|ref|XP_003021557.1| hypothetical protein TRV_04404 [Trichophyton verrucosum HKI 0517]
gi|291185460|gb|EFE40939.1| hypothetical protein TRV_04404 [Trichophyton verrucosum HKI 0517]
Length = 746
Score = 280 bits (715), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 185/519 (35%), Positives = 267/519 (51%), Gaps = 60/519 (11%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
N++ V ++ W ++ + +L + F PT IQ +P +L +D++G A TGSGK
Sbjct: 160 NDEADVDVSAWDSLDLRPELQTSLSRFKFAQPTPIQKATIPE-ILGGRDVIGKAATGSGK 218
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879
TLAFG+PIL ++N+ E + + + K K A
Sbjct: 219 TLAFGLPILQYLLNRQE------------------------QRPSTSLTLSKSGDKKPVA 254
Query: 880 LILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
LIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPGR
Sbjct: 255 LILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVHKQQRQLAEA-DIIVGTPGR 313
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP------- 989
LW+ + LT+L I +LV+DE DR++ GHF E+ +L + T TS
Sbjct: 314 LWDMVSSTPQILTKLRSIKFLVVDEADRLLSEGHFKEVGELLSALDKTRTSDEDVDEAPE 373
Query: 990 -------RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKI 1040
RQT VFSAT L+ L K+ S + S++ L L K P+
Sbjct: 374 EEEELGGRQTLVFSATFQKGLQQKLA-KRDHSFHDNLLDKKESMEYLLKKLRFKDEKPRF 432
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTM 1099
+D+ + L E I C EKD YLY +L +P RTLVF NSISSV+RLT L
Sbjct: 433 IDVNPVSQMADNLKEGIIECSAMEKDLYLYSVLLFYPKHRTLVFTNSISSVRRLTHFLQN 492
Query: 1100 LKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L L LH+SM Q+ RL+ ++RF + IL+ATDVAARGLD+ GI+ VIHYHVPR
Sbjct: 493 LNLPALSLHSSMAQKARLRAVERFSSPTADPSPILIATDVAARGLDMQGIDLVIHYHVPR 552
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF---------NSLEKKVDLPDFPI 1207
T++ YIHRSGRTARA+ G ++++ +E ++ S K V L +
Sbjct: 553 TADTYIHRSGRTARASASGKSILICAPEETAGVTRLVAKVHHTQKRKSSSKDVQLHSIHL 612
Query: 1208 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRSG 1245
D +++ ++ R +L+K I E +K K + +WL +
Sbjct: 613 DRGIVTRLRPRANLSKKITESTLAKEKISSEADWLRSAA 651
Score = 251 bits (642), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 176/517 (34%), Positives = 251/517 (48%), Gaps = 102/517 (19%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
N++ V ++ W ++ + +L + F PT IQ +P +L +D++G A TGSGK
Sbjct: 160 NDEADVDVSAWDSLDLRPELQTSLSRFKFAQPTPIQKATIPE-ILGGRDVIGKAATGSGK 218
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262
TLAFG+PIL ++N+ E + + + K K A
Sbjct: 219 TLAFGLPILQYLLNRQE------------------------QRPSTSLTLSKSGDKKPVA 254
Query: 263 LILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
LIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPGR
Sbjct: 255 LILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVHKQQRQLAEA-DIIVGTPGR 313
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
LW+ + LT+L I +LV+DE DR++ GHF E+ +L + T TS
Sbjct: 314 LWDMVSSTPQILTKLRSIKFLVVDEADRLLSEGHFKEVGELLSALDKTRTSDEDVDEAP- 372
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
E RQT VFSAT L+ +K++K D S
Sbjct: 373 -------------EEEEELGGRQTLVFSATFQKGLQ------------QKLAKRDHSFH- 406
Query: 440 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499
+LL D+K+S Y L ++++
Sbjct: 407 -DNLL-----------------------------DKKESMEY----------LLKKLR-- 424
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVK 558
+ P+ +D+ + L E I C EKD YLY +L +P RTLVF NSISSV+
Sbjct: 425 FKDEKPRFIDVNPVSQMADNLKEGIIECSAMEKDLYLYSVLLFYPKHRTLVFTNSISSVR 484
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEH 615
RLT L L L LH+SM Q+ RL+ ++RF + IL+ATDVAARGLD+ GI+
Sbjct: 485 RLTHFLQNLNLPALSLHSSMAQKARLRAVERFSSPTADPSPILIATDVAARGLDMQGIDL 544
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
VIHYHVPRT++ YIHRSGRTARA+ G ++++ +E
Sbjct: 545 VIHYHVPRTADTYIHRSGRTARASASGKSILICAPEE 581
Score = 49.7 bits (117), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF---------NSLEKKVDLPDFPIDE 1288
D ++HRSGRTARA+ G ++++ +E ++ S K V L +D
Sbjct: 555 DTYIHRSGRTARASASGKSILICAPEETAGVTRLVAKVHHTQKRKSSSKDVQLHSIHLDR 614
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+++ ++ R +L+K I E +K K + +WL AA+D+ + D E +
Sbjct: 615 GIVTRLRPRANLSKKITESTLAKEKISSEADWLRSAAEDLGVDYDSEEFAE 665
Score = 48.1 bits (113), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPG
Sbjct: 254 ALILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVHKQQRQLAEA-DIIVGTPG 312
Query: 1413 AL 1414
L
Sbjct: 313 RL 314
>gi|398403739|ref|XP_003853336.1| hypothetical protein MYCGRDRAFT_41129 [Zymoseptoria tritici IPO323]
gi|339473218|gb|EGP88312.1| hypothetical protein MYCGRDRAFT_41129 [Zymoseptoria tritici IPO323]
Length = 793
Score = 280 bits (715), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 175/444 (39%), Positives = 243/444 (54%), Gaps = 53/444 (11%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W + + AL F PT IQ V+P +LA D++G A TGSGKTL
Sbjct: 205 DSAADVSAWRPLKLCPDTMAALAALKFSKPTAIQKFVIPE-VLAGHDVIGKASTGSGKTL 263
Query: 822 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
AFGIPIL E LE SA + + R L ALI
Sbjct: 264 AFGIPIL------------------------ERFLE-----SAVGADGKRAKRAPL-ALI 293
Query: 882 LAPTRELAIQVQNHI---LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
L+PTRELA+Q+ H+ +G +A + GGMS +KQ R L K I+VATPGRLW
Sbjct: 294 LSPTRELAVQLDQHLTSLCSSGLSRRPWIATLTGGMSIQKQQRQL-KDADIVVATPGRLW 352
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---DRVTMTETSQ----PRQ 991
E I+ G L +I +LVIDE DR++ G F E++ IL DRV E ++ RQ
Sbjct: 353 EIIESGRGTAAMLKQIEFLVIDEADRLLSEGQFKEVEEILNSLDRVDDAEGAEEGDETRQ 412
Query: 992 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGI 1049
T VFSAT +L+ L K + + SK S++ L LN + PK +D +
Sbjct: 413 TLVFSATFDRALQKKLVGKVNRQSALMGSK--ESMEYLLGKLNFREEEPKFIDANPVNQL 470
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
L E I C EKD YLY +L P R +VF NSIS+V+R+T LL L + + LH
Sbjct: 471 ASGLREGLIECSGTEKDLYLYALLLHETPTRAMVFTNSISAVRRITPLLQYLNINAMALH 530
Query: 1109 ASMNQRQRLKNLDRFRDQNNS------ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162
+ M Q+ RL++++RF ++ S +L+ATDVAARGLDI G++ V+HYH+PR ++ Y+
Sbjct: 531 SGMPQKARLRSIERFSQKHGSGKGQRSVLIATDVAARGLDIKGVDLVVHYHLPRAADTYV 590
Query: 1163 HRSGRTARANNEGLTLVLIESDEI 1186
HRSGRTARA +G ++++ +E+
Sbjct: 591 HRSGRTARAGQKGASILICGPEEV 614
Score = 229 bits (584), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 171/525 (32%), Positives = 240/525 (45%), Gaps = 131/525 (24%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W + + AL F PT IQ V+P +LA D++G A TGSGKTL
Sbjct: 205 DSAADVSAWRPLKLCPDTMAALAALKFSKPTAIQKFVIPE-VLAGHDVIGKASTGSGKTL 263
Query: 205 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264
AFGIPIL E LE SA + + R L ALI
Sbjct: 264 AFGIPIL------------------------ERFLE-----SAVGADGKRAKRAPL-ALI 293
Query: 265 LAPTRELAIQVQNHI---LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
L+PTRELA+Q+ H+ +G +A + GGMS +KQ R L K I+VATPGRLW
Sbjct: 294 LSPTRELAVQLDQHLTSLCSSGLSRRPWIATLTGGMSIQKQQRQL-KDADIVVATPGRLW 352
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
E I+ G L +I +LVIDE DR++ G F E++ IL
Sbjct: 353 EIIESGRGTAAMLKQIEFLVIDEADRLLSEGQFKEVEEIL-------------------- 392
Query: 382 FPELKNILDRVTMTETS----QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
N LDRV E + + RQT VFSAT +L+ L K + + SK S+
Sbjct: 393 -----NSLDRVDDAEGAEEGDETRQTLVFSATFDRALQKKLVGKVNRQSALMGSK--ESM 445
Query: 438 KRLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLCE 494
+ L LN + PK +D + L E I C EKD YLY +L P R +
Sbjct: 446 EYLLGKLNFREEEPKFIDANPVNQLASGLREGLIECSGTEKDLYLYALLLHETPTRAMV- 504
Query: 495 EIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554
T I + +T +LQ+
Sbjct: 505 ---------------FTNSISAVRRITP-----------------LLQY----------- 521
Query: 555 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN------SILLATDVAARGL 608
L + + LH+ M Q+ RL++++RF ++ S+L+ATDVAARGL
Sbjct: 522 ------------LNINAMALHSGMPQKARLRSIERFSQKHGSGKGQRSVLIATDVAARGL 569
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
DI G++ V+HYH+PR ++ Y+HRSGRTARA +G ++++ +E+
Sbjct: 570 DIKGVDLVVHYHLPRAADTYVHRSGRTARAGQKGASILICGPEEV 614
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNH---ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA+Q+ H + +G +A + GGMS +KQ R L K I+VATPG
Sbjct: 291 ALILSPTRELAVQLDQHLTSLCSSGLSRRPWIATLTGGMSIQKQQRQL-KDADIVVATPG 349
Query: 1413 AL 1414
L
Sbjct: 350 RL 351
>gi|119193909|ref|XP_001247558.1| hypothetical protein CIMG_01329 [Coccidioides immitis RS]
gi|118574275|sp|Q1E7Y4.1|MAK5_COCIM RecName: Full=ATP-dependent RNA helicase MAK5
gi|392863201|gb|EAS36075.2| ATP-dependent RNA helicase MAK5 [Coccidioides immitis RS]
Length = 783
Score = 280 bits (715), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 194/526 (36%), Positives = 284/526 (53%), Gaps = 79/526 (15%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V ++ W ++ + +L + F +PT IQS +P A+L D++G A TGSGKTLAFG
Sbjct: 187 VDVSAWDSLDLSAELQTSLGRLKFSSPTPIQSACIP-AVLQGHDVIGKASTGSGKTLAFG 245
Query: 825 IPILTGIVNKLEN---PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
IPI+ + K PT +E +S E ALI
Sbjct: 246 IPIVEYFLGKYRGGRAPTASEERESTKEP---------------------------MALI 278
Query: 882 LAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
L+PTRELA Q+ H+ D + P V++A V GG+S KQ R+L I++ATPGRLW
Sbjct: 279 LSPTRELAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQQRLLADA-DIIIATPGRLW 337
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---DRVTMTE---------- 985
E + L++L KI +LVIDE DR++ GHF E++ IL D+V +TE
Sbjct: 338 EVVGSMTGFLSKLKKIRFLVIDEADRLLSEGHFKEVEEILNAIDKVEITEEAYGERSERE 397
Query: 986 ---------TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 1036
++PRQT VFSAT L+ L+ K + K + S++ L LN +
Sbjct: 398 PEPEPDEEKKAEPRQTLVFSATFHKGLQQKLSGKIRYRNDDLLDKKE-SMEYLLRKLNFR 456
Query: 1037 S--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRL 1093
PK +D+ + + L E + C +KD LY +L HP RTLVF NSIS+V+RL
Sbjct: 457 EERPKFIDVNPISQMAQNLKEGLVQCAPMDKDLLLYTLLLYHPKHRTLVFTNSISAVRRL 516
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGIEHVI 1150
TQLL L LH+SM Q+ RL++++RF ++ IL+ATDVAARGLDI GI+ ++
Sbjct: 517 TQLLQNLNLPTFALHSSMAQKARLRSVERFSSLSSDPSSILVATDVAARGLDIKGIDLIV 576
Query: 1151 HYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF--------------NSL 1196
HYH+PRT++ Y+HRSGRTARA+ G ++++ +E ++ + +
Sbjct: 577 HYHIPRTADTYVHRSGRTARASASGKSILICAPEETTGVARLVAKIHSNKKDSSATESKM 636
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
EKKV L +D ++ ++ R+ LAK I E + +K K + D+WL
Sbjct: 637 EKKVPLQSVDLDRRIIDRLRPRVTLAKKITESILAKEKLSSEDDWL 682
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 213/673 (31%), Positives = 320/673 (47%), Gaps = 123/673 (18%)
Query: 19 GGVKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLK 78
GG K + K +K +K+ T + Q AE+ EE + D E +G + K
Sbjct: 77 GGEIKFKASKSKIKGILKNSTDKSGQPAEDWEEWSGFGD-DSEDGDGTTLEAE------K 129
Query: 79 RKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEV 138
+ +N +V N ++ + + NK + D K K ++ + E+
Sbjct: 130 KAENHGKVNDRRTKTNNSNKEKESNK---LPKDRGPRIKTDNGIKTGVSFAALQDEV--- 183
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
ED V ++ W ++ + +L + F +PT IQS +P A+L D++G A T
Sbjct: 184 ----EED--VDVSAWDSLDLSAELQTSLGRLKFSSPTPIQSACIP-AVLQGHDVIGKAST 236
Query: 199 GSGKTLAFGIPILTGIVNKLEN---PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 255
GSGKTLAFGIPI+ + K PT +E +S E
Sbjct: 237 GSGKTLAFGIPIVEYFLGKYRGGRAPTASEERESTKEP---------------------- 274
Query: 256 TRNKLYALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHI 312
ALIL+PTRELA Q+ H+ D + P V++A V GG+S KQ R+L I
Sbjct: 275 -----MALILSPTRELAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQQRLLADA-DI 328
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
++ATPGRLWE + L++L KI +LVIDE DR++ GHF E++ IL+ + E ++
Sbjct: 329 IIATPGRLWEVVGSMTGFLSKLKKIRFLVIDEADRLLSEGHFKEVEEILNAIDKVEITE- 387
Query: 373 RQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK 432
E+ + + ++PRQT VFSAT L+ Q S K+
Sbjct: 388 -----EAYGERSEREPEPEPDEEKKAEPRQTLVFSATFHKGLQ--------QKLSGKIRY 434
Query: 433 GDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
R DLL D+K+S Y +L+
Sbjct: 435 ------RNDDLL-----------------------------DKKESMEY--LLRK----- 452
Query: 493 CEEIQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLV 549
LN + PK +D+ + + L E + C +KD LY +L HP RTLV
Sbjct: 453 -------LNFREERPKFIDVNPISQMAQNLKEGLVQCAPMDKDLLLYTLLLYHPKHRTLV 505
Query: 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAAR 606
F NSIS+V+RLTQLL L LH+SM Q+ RL++++RF ++ IL+ATDVAAR
Sbjct: 506 FTNSISAVRRLTQLLQNLNLPTFALHSSMAQKARLRSVERFSSLSSDPSSILVATDVAAR 565
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEEN 666
GLDI GI+ ++HYH+PRT++ Y+HRSGRTARA+ G ++++ +E + + N
Sbjct: 566 GLDIKGIDLIVHYHIPRTADTYVHRSGRTARASASGKSILICAPEETTGVARLVAKIHSN 625
Query: 667 NEEEERAEADKEK 679
++ E+ EK
Sbjct: 626 KKDSSATESKMEK 638
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ D + P V++A V GG+S KQ R+L I++ATPG
Sbjct: 276 ALILSPTRELAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQQRLLADA-DIIIATPG 334
Query: 1413 ALSLKRIDLAKSIEYLESKIKKNR 1436
L ++ S+ SK+KK R
Sbjct: 335 RL----WEVVGSMTGFLSKLKKIR 354
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 15/116 (12%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF--------------NSLEKKVDLPD 1283
D ++HRSGRTARA+ G ++++ +E ++ + +EKKV L
Sbjct: 585 DTYVHRSGRTARASASGKSILICAPEETTGVARLVAKIHSNKKDSSATESKMEKKVPLQS 644
Query: 1284 FPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+D ++ ++ R+ LAK I E + +K K + D+WL AA+D+ + D + +
Sbjct: 645 VDLDRRIIDRLRPRVTLAKKITESILAKEKLSSEDDWLRSAAEDLGVDYDSDEFAE 700
>gi|255932267|ref|XP_002557690.1| Pc12g08600 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582309|emb|CAP80487.1| Pc12g08600 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 719
Score = 279 bits (714), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 189/511 (36%), Positives = 273/511 (53%), Gaps = 69/511 (13%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W N+ AL + F +P+ IQ +P A+L D+VG A TGSGKTLAFGIPI+
Sbjct: 142 WDGLNLSPETFTALSKMKFSSPSAIQKASIP-AILDGHDVVGKASTGSGKTLAFGIPIIE 200
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-YALILAPTREL 888
++ + +E ++D K +NK ALIL+PTREL
Sbjct: 201 HYLD--QRGKQEGQSD-------------------------KSEKNKSPIALILSPTREL 233
Query: 889 AIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
A Q+ HI + +P +VA + GGMS +KQ R L I++ TPGR+WE + G
Sbjct: 234 AHQLGKHIGELIANSPDTNARVALITGGMSIQKQQRQLATA-DIVIGTPGRVWEILSTGT 292
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNIL--------------DRVTMTETSQPRQ 991
+ ++ KI +LV+DE DR++ GHF E+++IL D E RQ
Sbjct: 293 GLIRKMQKIQFLVVDEADRLLSEGHFKEMEHILNALDKHQAGDIADMDEEEEEEEPSNRQ 352
Query: 992 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGI 1049
T VFSAT L+ L K + S ++ S++ L LN + PK +D+ + +
Sbjct: 353 TLVFSATFHKDLQQKL-AGKSRWTSGEMLDNKESMEYLLKKLNFREEKPKFIDVNPESQM 411
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
L E + C EKD YLY +L +P RTL+F NSIS+V+R+TQLL L+ LH
Sbjct: 412 AVGLKEGIVECPAMEKDLYLYSVLLYYPKHRTLIFTNSISAVRRITQLLQALQLPVFALH 471
Query: 1109 ASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
++M Q+ RL++++RF +SIL+ATDVAARGLDI G+ +IHYHVPRT++ Y+HRS
Sbjct: 472 SNMAQKARLRSIERFSSPTANPSSILVATDVAARGLDIKGVNCIIHYHVPRTADAYVHRS 531
Query: 1166 GRTARANNEGLTLVLIESDEIPLYIKMF--------------NSLEKKVDLPDFPIDESV 1211
GRTARA G ++++ DE+ ++ N KK+ L ID V
Sbjct: 532 GRTARAGESGKSILICAPDEVVGVARLAGKIHSKKTKKAEDSNGPSKKIPLESLDIDRRV 591
Query: 1212 LSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
++ ++ R+ LAK I + +K K N DNWL
Sbjct: 592 VARLRPRMSLAKRITDSTIAKEKVNTEDNWL 622
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 166/513 (32%), Positives = 244/513 (47%), Gaps = 114/513 (22%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W N+ AL + F +P+ IQ +P A+L D+VG A TGSGKTLAFGIPI+
Sbjct: 142 WDGLNLSPETFTALSKMKFSSPSAIQKASIP-AILDGHDVVGKASTGSGKTLAFGIPIIE 200
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-YALILAPTREL 271
++ + +E ++D K +NK ALIL+PTREL
Sbjct: 201 HYLD--QRGKQEGQSD-------------------------KSEKNKSPIALILSPTREL 233
Query: 272 AIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
A Q+ HI + +P +VA + GGMS +KQ R L I++ TPGR+WE + G
Sbjct: 234 AHQLGKHIGELIANSPDTNARVALITGGMSIQKQQRQLATA-DIVIGTPGRVWEILSTGT 292
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
+ ++ KI +LV+DE DR++ GHF E+++IL+ + + +I
Sbjct: 293 GLIRKMQKIQFLVVDEADRLLSEGHFKEMEHILNALDKHQAG----------------DI 336
Query: 389 LDRVTMTETSQP--RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 446
D E +P RQT VFSAT L+ L K + S ++ S++ L LN
Sbjct: 337 ADMDEEEEEEEPSNRQTLVFSATFHKDLQQKL-AGKSRWTSGEMLDNKESMEYLLKKLNF 395
Query: 447 KS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLCEEIQDLLNIK 503
+ PK +D+ + + L E + C EKD YLY +L +P RTL
Sbjct: 396 REEKPKFIDVNPESQMAVGLKEGIVECPAMEKDLYLYSVLLYYPKHRTLI---------- 445
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
T I + +T+ L
Sbjct: 446 ------FTNSISAVRRITQ----------------------------------------L 459
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYH 620
L L+ LH++M Q+ RL++++RF +SIL+ATDVAARGLDI G+ +IHYH
Sbjct: 460 LQALQLPVFALHSNMAQKARLRSIERFSSPTANPSSILVATDVAARGLDIKGVNCIIHYH 519
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
VPRT++ Y+HRSGRTARA G ++++ DE+
Sbjct: 520 VPRTADAYVHRSGRTARAGESGKSILICAPDEV 552
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF--------------NSLEKKVDLPD 1283
D ++HRSGRTARA G ++++ DE+ ++ N KK+ L
Sbjct: 525 DAYVHRSGRTARAGESGKSILICAPDEVVGVARLAGKIHSKKTKKAEDSNGPSKKIPLES 584
Query: 1284 FPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
ID V++ ++ R+ LAK I + +K K N DNWL AA D+ + D + Q
Sbjct: 585 LDIDRRVVARLRPRMSLAKRITDSTIAKEKVNTEDNWLRAAADDLGVEYDSDEFDQ 640
Score = 48.9 bits (115), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI + +P +VA + GGMS +KQ R L I++ TPG
Sbjct: 224 ALILSPTRELAHQLGKHIGELIANSPDTNARVALITGGMSIQKQQRQLATA-DIVIGTPG 282
>gi|50543204|ref|XP_499768.1| YALI0A04939p [Yarrowia lipolytica]
gi|49645633|emb|CAG83693.1| YALI0A04939p [Yarrowia lipolytica CLIB122]
Length = 998
Score = 279 bits (713), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 160/420 (38%), Positives = 248/420 (59%), Gaps = 31/420 (7%)
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
L+ E+ EN+ ++EE E+V ++ VK + A++ APTRELA Q+ +
Sbjct: 490 LDKEREDRENEVEMDEETEKVERDMSS--------VKPPQ----AIVFAPTRELAHQITD 537
Query: 895 HILDAGKYTPV---KVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
H+ ++ P+ +V + GG+S KQ R++ P I+VATPGR EFI +
Sbjct: 538 HLNAVSQFCPISGPRVMALTGGLSIMKQRRLMKWNPAIVVATPGRFHEFITDTDGMVDVF 597
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+ +V+DE DRM++ GH+ +L LD + + ++ RQT VFSAT SL L+ K+
Sbjct: 598 KRTKTVVMDEADRMLQDGHYEDLDKALDLIGRGKVAK-RQTCVFSATFQKSLMFKLDKKR 656
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
Q ++ +I+ L + + P VD + + + ES + C EKD YL
Sbjct: 657 KQRTG--LATDQETIRFLVSKMKFRQFHPTFVDANPAEVVARQVLESIVECGAMEKDQYL 714
Query: 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129
YYF+L +PG++++F NSI SVKRLT +L L+ + LH++M Q+ R+++L+RFRD N
Sbjct: 715 YYFLLTYPGKSIIFVNSIDSVKRLTPMLQNLELPAVQLHSNMIQKARMRSLERFRDNKNG 774
Query: 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--P 1187
IL+ATDVAARGLDIP + HV+HYH+PRT+++Y+HRSGRTARA NEG++++L DE P
Sbjct: 775 ILVATDVAARGLDIPNVHHVVHYHLPRTADVYVHRSGRTARAGNEGVSVLLCSPDEASGP 834
Query: 1188 L-----YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
L + N+L K L ++ VL+ IK R++LAK + + + + + D+WL
Sbjct: 835 LRKLRAALSRDNALAK---LKPLSMNYDVLAQIKPRVELAKELADSVLDSTQVGKQDSWL 891
Score = 184 bits (467), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 2/154 (1%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
P VD + + + ES + C EKD YLYYF+L +PG++++F NSI SVKRLT +L
Sbjct: 683 PTFVDANPAEVVARQVLESIVECGAMEKDQYLYYFLLTYPGKSIIFVNSIDSVKRLTPML 742
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L+ + LH++M Q+ R+++L+RFRD N IL+ATDVAARGLDIP + HV+HYH+PRT
Sbjct: 743 QNLELPAVQLHSNMIQKARMRSLERFRDNKNGILVATDVAARGLDIPNVHHVVHYHLPRT 802
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI--PLK 656
+++Y+HRSGRTARA NEG++V+L DE PL+
Sbjct: 803 ADVYVHRSGRTARAGNEGVSVLLCSPDEASGPLR 836
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 134/280 (47%), Gaps = 48/280 (17%)
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
L+ E+ EN+ ++EE E+V ++ VK + A++ APTRELA Q+ +
Sbjct: 490 LDKEREDRENEVEMDEETEKVERDMSS--------VKPPQ----AIVFAPTRELAHQITD 537
Query: 278 HILDAGKYTPV---KVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
H+ ++ P+ +V + GG+S KQ R++ P I+VATPGR EFI +
Sbjct: 538 HLNAVSQFCPISGPRVMALTGGLSIMKQRRLMKWNPAIVVATPGRFHEFITDTDGMVDVF 597
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+ +V+DE DRM++ GH + +L LD +
Sbjct: 598 KRTKTVVMDEADRMLQDGH----------------------------YEDLDKALDLIGR 629
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIV 452
+ ++ RQT VFSAT SL L+ K+ Q ++ +I+ L + + P V
Sbjct: 630 GKVAK-RQTCVFSATFQKSLMFKLDKKRKQRTG--LATDQETIRFLVSKMKFRQFHPTFV 686
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
D + + + ES + C EKD YLYYF+L +PG+++
Sbjct: 687 DANPAEVVARQVLESIVECGAMEKDQYLYYFLLTYPGKSI 726
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 778 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++I+ LY G+K+PT+IQ +P +LA D++G A TGSGKTLA+G+PIL
Sbjct: 367 SLIQGLYALGYKSPTEIQKKSIPP-ILAGDDVIGKASTGSGKTLAYGLPIL 416
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 11/104 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PL-----YIKMFNSLEKKVDLPDFPIDESV 1290
D ++HRSGRTARA NEG++++L DE PL + N+L K L ++ V
Sbjct: 804 DVYVHRSGRTARAGNEGVSVLLCSPDEASGPLRKLRAALSRDNALAK---LKPLSMNYDV 860
Query: 1291 LSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDD 1333
L+ IK R++LAK + + + + + D+WL++AA+D+ + D
Sbjct: 861 LAQIKPRVELAKELADSVLDSTQVGKQDSWLKEAAEDLGVDFSD 904
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 36/140 (25%)
Query: 1276 EKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDEN 1335
E + D+ D P D VL K+R D +E D EK +DM +
Sbjct: 475 EPRFDISDRPADLPVLD--KEREDRENEVEM----------DEETEKVERDM-------S 515
Query: 1336 LIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPV---KVACVVGGMS 1392
++P Q ++F APTRELA Q+ +H+ ++ P+ +V + GG+S
Sbjct: 516 SVKPPQAIVF--------------APTRELAHQITDHLNAVSQFCPISGPRVMALTGGLS 561
Query: 1393 TEKQLRILNKCPHILVATPG 1412
KQ R++ P I+VATPG
Sbjct: 562 IMKQRRLMKWNPAIVVATPG 581
Score = 41.6 bits (96), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 53/212 (25%)
Query: 48 NNEEEVEEAEA--------------DKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSA 93
+N + E ++ D K V + KK + +++ ++
Sbjct: 210 DNWSDAEFSDGGETIDLPAPGTKPLDINKMNWKKVELGDKKMDFEGFYGLEELDGVDIVV 269
Query: 94 NTNDP------------------DDQVNKTEEIQSDEP------------SSKKLKQKKK 123
N P +V K + + EP K++ + +
Sbjct: 270 NNGLPTFVVGEKPEKKNSKKETKKAEVKKDKSGDASEPAKKKAKVAKDGKDGKEVAKTQP 329
Query: 124 KKQTYTSANKELLEVDTSNNEDMFVQMAEWV----KFNIPETIIRALYQKGFKTPTKIQS 179
K+ + A E S +D + + +W + N ++I+ LY G+K+PT+IQ
Sbjct: 330 KQNSKKKAEGNAFEALNSVPDD--IHLPDWTLNGEQLNY--SLIQGLYALGYKSPTEIQK 385
Query: 180 MVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+P +LA D++G A TGSGKTLA+G+PIL
Sbjct: 386 KSIPP-ILAGDDVIGKASTGSGKTLAYGLPIL 416
>gi|320039765|gb|EFW21699.1| ATP-dependent RNA helicase MAK5 [Coccidioides posadasii str.
Silveira]
Length = 783
Score = 279 bits (713), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 195/526 (37%), Positives = 284/526 (53%), Gaps = 79/526 (15%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V ++ W ++ + +L + F PT IQS +P A+L D++G A TGSGKTLAFG
Sbjct: 187 VDVSAWDSLDLSAELQTSLGRLKFSFPTPIQSACIP-AVLQGHDVIGKASTGSGKTLAFG 245
Query: 825 IPILTGIVNKLEN---PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
IPI+ + K PT +E++S E ALI
Sbjct: 246 IPIVEYFLGKYRGGRAPTASEESESTKEP---------------------------MALI 278
Query: 882 LAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
L+PTRELA Q+ H+ D + P V++A V GG+S KQ R+L I++ATPGRLW
Sbjct: 279 LSPTRELAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQQRLLADA-DIIIATPGRLW 337
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---DRVTMTE---------- 985
E + L++L KI +LVIDE DR++ GHF E++ IL D+V +TE
Sbjct: 338 EVVGSMTGFLSKLKKIRFLVIDEADRLLSEGHFKEVEEILNAIDKVEITEEAYGERSERE 397
Query: 986 ---------TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 1036
++PRQT VFSAT L+ L+ K + K + S++ L LN +
Sbjct: 398 PEPEPDEEKKAEPRQTLVFSATFHKGLQQKLSGKIRYRNDDLLDKKE-SMEYLLRKLNFR 456
Query: 1037 S--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRL 1093
PK +D+ + + L E + C +KD LY +L HP RTLVF NSIS+V+RL
Sbjct: 457 EERPKFIDVNPISQMAENLKEGLVQCAPMDKDLLLYTLLLYHPKHRTLVFTNSISAVRRL 516
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGIEHVI 1150
TQLL L LH+SM Q+ RL++++RF ++ IL+ATDVAARGLDI GI+ ++
Sbjct: 517 TQLLQNLNLPTFALHSSMAQKARLRSVERFSSLSSDPSSILVATDVAARGLDIKGIDLIV 576
Query: 1151 HYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF--------------NSL 1196
HYHVPRT++ Y+HRSGRTARA+ G ++++ +E ++ + +
Sbjct: 577 HYHVPRTADTYVHRSGRTARASASGKSILICAPEETTGVARLVAKIHSNKKDSSATESKM 636
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
EKKV L +D ++ ++ R+ LAK I E + +K K + D+WL
Sbjct: 637 EKKVPLQSVDLDRRIIDRLRPRVTLAKRITESILAKEKLSSEDDWL 682
Score = 247 bits (630), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 187/544 (34%), Positives = 272/544 (50%), Gaps = 104/544 (19%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V ++ W ++ + +L + F PT IQS +P A+L D++G A TGSGKTLAFG
Sbjct: 187 VDVSAWDSLDLSAELQTSLGRLKFSFPTPIQSACIP-AVLQGHDVIGKASTGSGKTLAFG 245
Query: 208 IPILTGIVNKLEN---PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264
IPI+ + K PT +E++S E ALI
Sbjct: 246 IPIVEYFLGKYRGGRAPTASEESESTKEP---------------------------MALI 278
Query: 265 LAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
L+PTRELA Q+ H+ D + P V++A V GG+S KQ R+L I++ATPGRLW
Sbjct: 279 LSPTRELAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQQRLLADA-DIIIATPGRLW 337
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
E + L++L KI +LVIDE DR++ GHF E++ IL+ + E ++ E+
Sbjct: 338 EVVGSMTGFLSKLKKIRFLVIDEADRLLSEGHFKEVEEILNAIDKVEITE------EAYG 391
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 441
+ + ++PRQT VFSAT L+ Q S K+ R
Sbjct: 392 ERSEREPEPEPDEEKKAEPRQTLVFSATFHKGLQ--------QKLSGKIRY------RND 437
Query: 442 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLN 501
DLL D+K+S Y +L+ LN
Sbjct: 438 DLL-----------------------------DKKESMEY--LLRK------------LN 454
Query: 502 IKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVK 558
+ PK +D+ + + L E + C +KD LY +L HP RTLVF NSIS+V+
Sbjct: 455 FREERPKFIDVNPISQMAENLKEGLVQCAPMDKDLLLYTLLLYHPKHRTLVFTNSISAVR 514
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGIEH 615
RLTQLL L LH+SM Q+ RL++++RF ++ IL+ATDVAARGLDI GI+
Sbjct: 515 RLTQLLQNLNLPTFALHSSMAQKARLRSVERFSSLSSDPSSILVATDVAARGLDIKGIDL 574
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEA 675
++HYHVPRT++ Y+HRSGRTARA+ G ++++ +E + + N ++ E+
Sbjct: 575 IVHYHVPRTADTYVHRSGRTARASASGKSILICAPEETTGVARLVAKIHSNKKDSSATES 634
Query: 676 DKEK 679
EK
Sbjct: 635 KMEK 638
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ D + P V++A V GG+S KQ R+L I++ATPG
Sbjct: 276 ALILSPTRELAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQQRLLADA-DIIIATPG 334
Query: 1413 ALSLKRIDLAKSIEYLESKIKKNR 1436
L ++ S+ SK+KK R
Sbjct: 335 RL----WEVVGSMTGFLSKLKKIR 354
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 15/116 (12%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF--------------NSLEKKVDLPD 1283
D ++HRSGRTARA+ G ++++ +E ++ + +EKKV L
Sbjct: 585 DTYVHRSGRTARASASGKSILICAPEETTGVARLVAKIHSNKKDSSATESKMEKKVPLQS 644
Query: 1284 FPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+D ++ ++ R+ LAK I E + +K K + D+WL AA+D+ + D + +
Sbjct: 645 VDLDRRIIDRLRPRVTLAKRITESILAKEKLSSEDDWLRSAAEDLGVDYDSDEFAE 700
>gi|50418781|ref|XP_457911.1| DEHA2C05170p [Debaryomyces hansenii CBS767]
gi|74659437|sp|Q6BV58.1|MAK5_DEBHA RecName: Full=ATP-dependent RNA helicase MAK5
gi|49653577|emb|CAG85962.1| DEHA2C05170p [Debaryomyces hansenii CBS767]
Length = 790
Score = 279 bits (713), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 187/526 (35%), Positives = 279/526 (53%), Gaps = 68/526 (12%)
Query: 755 VDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 814
VD + +D V + W ++ + L ++ PT IQ +P A+ KD++G A
Sbjct: 186 VDLTLPDDNEVNLPYWDDLSLSSFTLNGLSALEYEKPTAIQKRTIPLAIEG-KDVIGKAI 244
Query: 815 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTR 874
TGSGKTLA+GIPIL + K+ + KK
Sbjct: 245 TGSGKTLAYGIPILERHLQKMAKANQS-----------------------------KKVI 275
Query: 875 NKLYALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILV 931
N +I APTRELA QV +H+ K+TP+ + + GG+S +KQ R+L+ P I+V
Sbjct: 276 NPPTGIIFAPTRELAHQVVDHLNRIAKFTPLSQHGIVSITGGLSIQKQERLLSHGPGIVV 335
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR- 990
ATPGR E +Q + L + +V+DE DR+++ GHF E IL+ + +PR
Sbjct: 336 ATPGRFLELLQKDMALVQRLSCTDIVVLDEADRLLQDGHFDEFVKILE---LFGKHRPRD 392
Query: 991 --------QTFVFSATLTHSLKNSLN--LKKGQSKSKKVSK---GDPSIKRLQDLLNIKS 1037
QT VFSAT + L L+ LK ++K + S D ++ L D L K
Sbjct: 393 NKELEWKWQTLVFSATFSRDLFGKLDKHLKSNKNKEEMGSSLIDNDEILQLLNDKLKFKD 452
Query: 1038 --PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 1095
P +VD K + +TE+ + C E+D YLYYF+L +PG TLVF NSI SVKRL
Sbjct: 453 SKPTLVDANPKEMVAGQITEALVECGPTERDLYLYYFLLLYPGSTLVFANSIDSVKRLAP 512
Query: 1096 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN----SILLATDVAARGLDIPGIEHVIH 1151
L LK +H+SM Q+QRL+ L+RF++ ++ ++L+A+DVAARGLDIP I+HV H
Sbjct: 513 FLNNLKVPTFSIHSSMIQKQRLRTLERFKEASSKNSTAVLIASDVAARGLDIPNIDHVAH 572
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK-----MFNSLEKKV------ 1200
YH+PR++++YIHRSGRT RA EG++++ E ++ + N+ +K+
Sbjct: 573 YHLPRSADVYIHRSGRTGRAGKEGVSIMFCSPQESSGPLRKLRKLVANNTKKRTRLNVHN 632
Query: 1201 DLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP-DNWLHRSG 1245
D+ P++ ++S IK R+ LA + E R DNW+H +
Sbjct: 633 DVKLLPLEMDLVSQIKPRVTLASKLADAERSSSSTRKEDNWVHEAA 678
Score = 246 bits (629), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 176/524 (33%), Positives = 255/524 (48%), Gaps = 112/524 (21%)
Query: 138 VDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 197
VD + +D V + W ++ + L ++ PT IQ +P A+ KD++G A
Sbjct: 186 VDLTLPDDNEVNLPYWDDLSLSSFTLNGLSALEYEKPTAIQKRTIPLAIEG-KDVIGKAI 244
Query: 198 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTR 257
TGSGKTLA+GIPIL + K+ + KK
Sbjct: 245 TGSGKTLAYGIPILERHLQKMAKANQS-----------------------------KKVI 275
Query: 258 NKLYALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILV 314
N +I APTRELA QV +H+ K+TP+ + + GG+S +KQ R+L+ P I+V
Sbjct: 276 NPPTGIIFAPTRELAHQVVDHLNRIAKFTPLSQHGIVSITGGLSIQKQERLLSHGPGIVV 335
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGR E +Q + L + +V+DE DR+++ GHF E IL+ + +PR
Sbjct: 336 ATPGRFLELLQKDMALVQRLSCTDIVVLDEADRLLQDGHFDEFVKILE---LFGKHRPRD 392
Query: 375 TMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD 434
E QT VFSAT + L L+ +K+K
Sbjct: 393 N-------------------KELEWKWQTLVFSATFSRDLFGKLDKHLKSNKNK------ 427
Query: 435 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCE 494
E++G + L +DE ILQ
Sbjct: 428 ---------------------EEMGSS--------LIDNDE--------ILQL------- 443
Query: 495 EIQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 552
+ D L K P +VD K + +TE+ + C E+D YLYYF+L +PG TLVF N
Sbjct: 444 -LNDKLKFKDSKPTLVDANPKEMVAGQITEALVECGPTERDLYLYYFLLLYPGSTLVFAN 502
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN----SILLATDVAARGL 608
SI SVKRL L LK +H+SM Q+QRL+ L+RF++ ++ ++L+A+DVAARGL
Sbjct: 503 SIDSVKRLAPFLNNLKVPTFSIHSSMIQKQRLRTLERFKEASSKNSTAVLIASDVAARGL 562
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DIP I+HV HYH+PR++++YIHRSGRT RA EG++++ E
Sbjct: 563 DIPNIDHVAHYHLPRSADVYIHRSGRTGRAGKEGVSIMFCSPQE 606
Score = 61.2 bits (147), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPG 1412
+I APTRELA QV +H+ K+TP+ + + GG+S +KQ R+L+ P I+VATPG
Sbjct: 280 GIIFAPTRELAHQVVDHLNRIAKFTPLSQHGIVSITGGLSIQKQERLLSHGPGIVVATPG 339
Query: 1413 A-LSLKRIDLA 1422
L L + D+A
Sbjct: 340 RFLELLQKDMA 350
Score = 45.1 bits (105), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIK-----MFNSLEKKV------DLPDFPI 1286
D ++HRSGRT RA EG++++ E ++ + N+ +K+ D+ P+
Sbjct: 580 DVYIHRSGRTGRAGKEGVSIMFCSPQESSGPLRKLRKLVANNTKKRTRLNVHNDVKLLPL 639
Query: 1287 DESVLSLIKKRIDLAKSIEYLESKIKKNRP-DNWLEKAAKDMDI 1329
+ ++S IK R+ LA + E R DNW+ +AA+++ I
Sbjct: 640 EMDLVSQIKPRVTLASKLADAERSSSSTRKEDNWVHEAAEELGI 683
>gi|363753372|ref|XP_003646902.1| hypothetical protein Ecym_5326 [Eremothecium cymbalariae DBVPG#7215]
gi|356890538|gb|AET40085.1| hypothetical protein Ecym_5326 [Eremothecium cymbalariae DBVPG#7215]
Length = 757
Score = 279 bits (713), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 201/594 (33%), Positives = 303/594 (51%), Gaps = 88/594 (14%)
Query: 704 EVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDM 763
E+S LS++ + +D + +SD + ++ K K + + +VD + E
Sbjct: 133 ELSALSSSDTEDEDMEDALSVPKSDSEEETEDQEGKLKPEVFN------WQVDLDDIE-- 184
Query: 764 FVQMAEWV-KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822
++ W K + ++AL + GF +PT+IQ +P AL DI+G A TGSGKTLA
Sbjct: 185 LPELPAWSNKMKLSFFTLQALAKLGFTSPTEIQVQSIPKALEGL-DIMGKASTGSGKTLA 243
Query: 823 FGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALIL 882
+GIPIL T +K AL+
Sbjct: 244 YGIPIL--------------------------------------ERLFASTNDKPIALVF 265
Query: 883 APTRELAIQVQNHILDA----GKYTPVKVACVVGGMSTEKQLRILN--KCPHILVATPGR 936
PTRELA QV H+ + K P + + GG+S +KQ R+L+ I+VATPGR
Sbjct: 266 TPTRELAHQVTTHLQNVLGNLVKKMPYAILSLTGGLSIQKQERLLDYEGSSRIVVATPGR 325
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQPRQTF 993
E ++ + +I LV+DE DR+++ GHF E + I L+R T S+ QT
Sbjct: 326 FLELLEKNEDLIKRFAEIGVLVLDEADRLLQDGHFDEFEKIFKHLNREQKTLKSEKWQTM 385
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKG--DPSIKRLQDLLNIKS-PKIVDLTEKIGIT 1050
+ SAT + L + L+ ++ + +K L ++ KS P I+D + IT
Sbjct: 386 ILSATFSIDLFSKLSTTHWKNLKNNKENNEMEAVLKHLMTKISFKSKPVIIDTNPESKIT 445
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
+ ES I C E+D Y+YYF+ +P TLVFCN+I SVK+LT L LK S +H+S
Sbjct: 446 AQVKESLIECGPTERDLYVYYFLTLYPATTLVFCNAIDSVKKLTAYLNNLKISAFQIHSS 505
Query: 1111 MNQRQRLKNLDRFRD--------QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162
M Q+ RLK+L++F+ ++L+A+DVAARGLDIPGI+HVIHYH+PR+++IYI
Sbjct: 506 MLQKNRLKSLEKFQQLCEVNAQHGKPTVLIASDVAARGLDIPGIKHVIHYHLPRSADIYI 565
Query: 1163 HRSGRTARANNEGLTLVLIESDEI-----PLYIKMFNSLEKKV------DLPDFPIDESV 1211
HRSGRTAR N EG+ + + E L + N L K +L PI++ +
Sbjct: 566 HRSGRTARGNQEGVAVTICSPQEAIGPLRKLRKLLANDLASKTGKKWQKELTVIPIEDDI 625
Query: 1212 LSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHRSGRTARANNEGLTLVLIESDE 1264
L+ +++R LA ++ E K N+ D WL ++ A++ G+ IESDE
Sbjct: 626 LTQLRERSRLASALADDELATKSLNKDDIWLKKA-----ADDLGID---IESDE 671
Score = 229 bits (584), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 176/584 (30%), Positives = 261/584 (44%), Gaps = 146/584 (25%)
Query: 87 EVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDM 146
E+S LS++ + +D + +SD + ++ K K + + +VD + E
Sbjct: 133 ELSALSSSDTEDEDMEDALSVPKSDSEEETEDQEGKLKPEVFN------WQVDLDDIE-- 184
Query: 147 FVQMAEWV-KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205
++ W K + ++AL + GF +PT+IQ +P AL DI+G A TGSGKTLA
Sbjct: 185 LPELPAWSNKMKLSFFTLQALAKLGFTSPTEIQVQSIPKALEGL-DIMGKASTGSGKTLA 243
Query: 206 FGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALIL 265
+GIPIL T +K AL+
Sbjct: 244 YGIPIL--------------------------------------ERLFASTNDKPIALVF 265
Query: 266 APTRELAIQVQNHILDA----GKYTPVKVACVVGGMSTEKQLRILN--KCPHILVATPGR 319
PTRELA QV H+ + K P + + GG+S +KQ R+L+ I+VATPGR
Sbjct: 266 TPTRELAHQVTTHLQNVLGNLVKKMPYAILSLTGGLSIQKQERLLDYEGSSRIVVATPGR 325
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
E ++ + +I LV+DE DR+++ GHF E + I
Sbjct: 326 FLELLEKNEDLIKRFAEIGVLVLDEADRLLQDGHFDEFEKIFKH---------------- 369
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG--DPSI 437
L+R T S+ QT + SAT + L + L+ ++ + +
Sbjct: 370 ---------LNREQKTLKSEKWQTMILSATFSIDLFSKLSTTHWKNLKNNKENNEMEAVL 420
Query: 438 KRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
K L ++ KS P I+D + IT + ES I C E+D Y+YYF+ +P TL
Sbjct: 421 KHLMTKISFKSKPVIIDTNPESKITAQVKESLIECGPTERDLYVYYFLTLYPATTL---- 476
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556
+ C N+I S
Sbjct: 477 ----------------------------VFC------------------------NAIDS 484
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD--------QNNSILLATDVAARGL 608
VK+LT L LK S +H+SM Q+ RLK+L++F+ ++L+A+DVAARGL
Sbjct: 485 VKKLTAYLNNLKISAFQIHSSMLQKNRLKSLEKFQQLCEVNAQHGKPTVLIASDVAARGL 544
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DIPGI+HVIHYH+PR+++IYIHRSGRTAR N EG+ V + E
Sbjct: 545 DIPGIKHVIHYHLPRSADIYIHRSGRTARGNQEGVAVTICSPQE 588
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 23/149 (15%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI-----PLYIKMFNSLEKKV------DLPDFPI 1286
D ++HRSGRTAR N EG+ + + E L + N L K +L PI
Sbjct: 562 DIYIHRSGRTARGNQEGVAVTICSPQEAIGPLRKLRKLLANDLASKTGKKWQKELTVIPI 621
Query: 1287 DESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIII--DDENLI------ 1337
++ +L+ +++R LA ++ E K N+ D WL+KAA D+ I I D+E +
Sbjct: 622 EDDILTQLRERSRLASALADDELATKSLNKDDIWLKKAADDLGIDIESDEEKDVILSKNK 681
Query: 1338 ---QPNQLLIFESRNLRYSWDALILAPTR 1363
+ Q+ E++++RY L+ P R
Sbjct: 682 NKKKNKQMAKSEAKSMRYQLADLLQIPIR 710
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDA----GKYTPVKVACVVGGMSTEKQLRILN--KCPHILVA 1409
AL+ PTRELA QV H+ + K P + + GG+S +KQ R+L+ I+VA
Sbjct: 262 ALVFTPTRELAHQVTTHLQNVLGNLVKKMPYAILSLTGGLSIQKQERLLDYEGSSRIVVA 321
Query: 1410 TPG 1412
TPG
Sbjct: 322 TPG 324
>gi|410516913|sp|Q4IBS2.2|MAK5_GIBZE RecName: Full=ATP-dependent RNA helicase MAK5
Length = 781
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 190/520 (36%), Positives = 274/520 (52%), Gaps = 73/520 (14%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
D + ED V MA WV N+ II A+ + F PTKIQ +P ++A D++G A+T
Sbjct: 205 DYKDQED--VDMAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPE-IVAGHDVIGKAQT 261
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKTLAFGIP++ E E++E+ VK+T
Sbjct: 262 GSGKTLAFGIPMV-------------------------ERWLEMQEQG------VKRT-- 288
Query: 876 KLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+L+L+PTRELA Q+ +H+ L G + V V GG+S KQ R L K I++ T
Sbjct: 289 GPMSLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLEKA-DIVIGT 347
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV------------ 981
PGRLWE + ++ KI +LV+DE DR+ + G F E ++I+ +
Sbjct: 348 PGRLWEVLSGDRALQSKFAKIRFLVVDEADRLFKVGQFKEAEDIIGALDGKSPGDDAESE 407
Query: 982 ------TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 1035
+ RQT VFSAT L+ L K K D + L L
Sbjct: 408 EESDEEDEDDEDAARQTLVFSATFDKDLQTKL-----AGKGKSSGNDDEKMAYLMKCLKF 462
Query: 1036 KS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRL 1093
+ PK +D+ + + L E I C EKD YLY ++ +PGR TLVF NSIS+V+RL
Sbjct: 463 RGEPKFIDVNPVSQMAEGLREGLIECGAMEKDLYLYTVLILNPGRRTLVFTNSISAVRRL 522
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
T LLT L + LPLH+ M Q+ R ++L+RF NSIL+ATDVAARGLDI ++ V+HYH
Sbjct: 523 TPLLTNLNLTALPLHSQMAQKARHRSLERFTASRNSILIATDVAARGLDIKEVDQVLHYH 582
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--------PLYIKMFNSLEKKVDLPDF 1205
VPR+++ YIHRSGRTAR + G++++L +E+ ++ ++++ +
Sbjct: 583 VPRSADTYIHRSGRTARGESSGISVILCAPEEVLPTRRLASKVHAVRSAGVKREHFIQTL 642
Query: 1206 PIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
ID S +K R+DLAK I + + +K K + D WL +
Sbjct: 643 LIDRKAASRLKPRVDLAKKIADTILAKEKAHSDDTWLRNA 682
Score = 250 bits (639), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 184/518 (35%), Positives = 256/518 (49%), Gaps = 110/518 (21%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
D + ED V MA WV N+ II A+ + F PTKIQ +P ++A D++G A+T
Sbjct: 205 DYKDQED--VDMAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPE-IVAGHDVIGKAQT 261
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKTLAFGIP++ E E++E+ VK+T
Sbjct: 262 GSGKTLAFGIPMV-------------------------ERWLEMQEQG------VKRT-- 288
Query: 259 KLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+L+L+PTRELA Q+ +H+ L G + V V GG+S KQ R L K I++ T
Sbjct: 289 GPMSLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLEKA-DIVIGT 347
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE + ++ KI +LV+DE DR+ + G F E ++I + + P
Sbjct: 348 PGRLWEVLSGDRALQSKFAKIRFLVVDEADRLFKVGQFKEAEDI---IGALDGKSP---- 400
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
G E + D + RQT VFSAT L+ L G+ KS
Sbjct: 401 ---GDDAESEEESDEEDEDDEDAARQTLVFSATFDKDLQTKL---AGKGKSS-------- 446
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
DEK +YL C +
Sbjct: 447 ----------------------------------GNDDEKMAYLMK----------CLKF 462
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSIS 555
+ PK +D+ + + L E I C EKD YLY ++ +PGR TLVF NSIS
Sbjct: 463 RG-----EPKFIDVNPVSQMAEGLREGLIECGAMEKDLYLYTVLILNPGRRTLVFTNSIS 517
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615
+V+RLT LLT L + LPLH+ M Q+ R ++L+RF NSIL+ATDVAARGLDI ++
Sbjct: 518 AVRRLTPLLTNLNLTALPLHSQMAQKARHRSLERFTASRNSILIATDVAARGLDIKEVDQ 577
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
V+HYHVPR+++ YIHRSGRTAR + G++V+L +E+
Sbjct: 578 VLHYHVPRSADTYIHRSGRTARGESSGISVILCAPEEV 615
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--------PLYIKMFNSLEKKVDLPDFPIDES 1289
D ++HRSGRTAR + G++++L +E+ ++ ++++ + ID
Sbjct: 588 DTYIHRSGRTARGESSGISVILCAPEEVLPTRRLASKVHAVRSAGVKREHFIQTLLIDRK 647
Query: 1290 VLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPN 1340
S +K R+DLAK I + + +K K + D WL AA ++ + D ++L + N
Sbjct: 648 AASRLKPRVDLAKKIADTILAKEKAHSDDTWLRNAADELGVEYDSDDLEEIN 699
Score = 43.5 bits (101), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+L+L+PTRELA Q+ +H+ L G + V V GG+S KQ R L K I++ TPG
Sbjct: 292 SLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLEKA-DIVIGTPGR 350
Query: 1414 L 1414
L
Sbjct: 351 L 351
>gi|46121917|ref|XP_385512.1| hypothetical protein FG05336.1 [Gibberella zeae PH-1]
Length = 783
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 192/520 (36%), Positives = 269/520 (51%), Gaps = 73/520 (14%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
D + ED V MA WV N+ II A+ + F PTKIQ +P ++A D++G A+T
Sbjct: 205 DYKDQED--VDMAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPE-IVAGHDVIGKAQT 261
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKTLAFGIP++ E E++E+ R
Sbjct: 262 GSGKTLAFGIPMV-------------------------ERWLEMQEQGVK--------RT 288
Query: 876 KLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+L+L+PTRELA Q+ +H+ L G + V V GG+S KQ R L K I++ T
Sbjct: 289 GPMSLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLEKA-DIVIGT 347
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV------------ 981
PGRLWE + ++ KI +LV+DE DR+ + G F E ++I+ +
Sbjct: 348 PGRLWEVLSGDRALQSKFAKIRFLVVDEADRLFKVGQFKEAEDIIGALDGKSPGDDAESE 407
Query: 982 ------TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 1035
+ RQT VFSAT L+ L K K D + L L
Sbjct: 408 EESDEEDEDDEDAARQTLVFSATFDKDLQTKL-----AGKGKSSGNDDEKMAYLMKCLKF 462
Query: 1036 KS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRL 1093
+ PK +D+ + + L E I C EKD YLY ++ +PGR TLVF NSIS+V+RL
Sbjct: 463 RGEPKFIDVNPVSQMAEGLREGLIECGAMEKDLYLYTVLILNPGRRTLVFTNSISAVRRL 522
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
T LLT L + LPLH+ M Q+ R ++L+RF NSIL+ATDVAARGLDI ++ V+HYH
Sbjct: 523 TPLLTNLNLTALPLHSQMAQKARHRSLERFTASRNSILIATDVAARGLDIKEVDQVLHYH 582
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEI----PLYIKMFNSLEKKVDLPDFP--- 1206
VPR+++ YIHRSGRTAR + G++++L +E+ L K+ V F
Sbjct: 583 VPRSADTYIHRSGRTARGESSGISVILCAPEEVLPTRRLASKVHAVRSAGVKREHFIQTL 642
Query: 1207 -IDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRS 1244
ID S +K R+DLAK I + + +K K + D WL +
Sbjct: 643 LIDRKAASRLKPRVDLAKKIADTILAKEKAHSDDTWLRNA 682
Score = 250 bits (639), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 182/518 (35%), Positives = 254/518 (49%), Gaps = 110/518 (21%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
D + ED V MA WV N+ II A+ + F PTKIQ +P ++A D++G A+T
Sbjct: 205 DYKDQED--VDMAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPE-IVAGHDVIGKAQT 261
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKTLAFGIP++ E E++E+ R
Sbjct: 262 GSGKTLAFGIPMV-------------------------ERWLEMQEQGVK--------RT 288
Query: 259 KLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+L+L+PTRELA Q+ +H+ L G + V V GG+S KQ R L K I++ T
Sbjct: 289 GPMSLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLEKA-DIVIGT 347
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE + ++ KI +LV+DE DR+ + G F E ++I+ + + P
Sbjct: 348 PGRLWEVLSGDRALQSKFAKIRFLVVDEADRLFKVGQFKEAEDIIGAL---DGKSP---- 400
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
G E + D + RQT VFSAT L+ L G+ KS
Sbjct: 401 ---GDDAESEEESDEEDEDDEDAARQTLVFSATFDKDLQTKL---AGKGKSS-------- 446
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
DEK +YL C +
Sbjct: 447 ----------------------------------GNDDEKMAYLMK----------CLKF 462
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSIS 555
+ PK +D+ + + L E I C EKD YLY ++ +PGR TLVF NSIS
Sbjct: 463 RG-----EPKFIDVNPVSQMAEGLREGLIECGAMEKDLYLYTVLILNPGRRTLVFTNSIS 517
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615
+V+RLT LLT L + LPLH+ M Q+ R ++L+RF NSIL+ATDVAARGLDI ++
Sbjct: 518 AVRRLTPLLTNLNLTALPLHSQMAQKARHRSLERFTASRNSILIATDVAARGLDIKEVDQ 577
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
V+HYHVPR+++ YIHRSGRTAR + G++V+L +E+
Sbjct: 578 VLHYHVPRSADTYIHRSGRTARGESSGISVILCAPEEV 615
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI----PLYIKMFNSLEKKVDLPDFP----IDES 1289
D ++HRSGRTAR + G++++L +E+ L K+ V F ID
Sbjct: 588 DTYIHRSGRTARGESSGISVILCAPEEVLPTRRLASKVHAVRSAGVKREHFIQTLLIDRK 647
Query: 1290 VLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPN 1340
S +K R+DLAK I + + +K K + D WL AA ++ + D ++L + N
Sbjct: 648 AASRLKPRVDLAKKIADTILAKEKAHSDDTWLRNAADELGVEYDSDDLEEIN 699
Score = 43.5 bits (101), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+L+L+PTRELA Q+ +H+ L G + V V GG+S KQ R L K I++ TPG
Sbjct: 292 SLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQRQLEKA-DIVIGTPGR 350
Query: 1414 L 1414
L
Sbjct: 351 L 351
>gi|159124341|gb|EDP49459.1| ATP dependent RNA helicase, putative [Aspergillus fumigatus A1163]
Length = 795
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 189/532 (35%), Positives = 279/532 (52%), Gaps = 78/532 (14%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
ED ++ W + I+ L + F +PT +Q +P +L D++G A TGSGKT
Sbjct: 194 EDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQ-ILEGHDVIGKASTGSGKT 252
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFGIPIL E LE+ ++ + E + + + AL
Sbjct: 253 LAFGIPIL------------------------EHYLEKKRDDISAQKEQMSEKDSTPIAL 288
Query: 881 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
IL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L+ I++ TPGR+
Sbjct: 289 ILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLSGA-DIVIGTPGRV 347
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---DRVTMTET-------- 986
WE + G + ++ +I +LV+DE DR++ GHF E++ IL DRV E
Sbjct: 348 WEILSTGQGLIRKMQQIKFLVVDEADRLLSEGHFKEVEQILNSLDRVEDGEVPDGEDQAS 407
Query: 987 ------SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--P 1038
S RQT VFSAT L+ L K+ ++ + K + S+ L LN + P
Sbjct: 408 EEESDPSSERQTLVFSATFHRDLQQKLAGKRKWTRGDIMDKKE-SMDYLLQKLNFREEKP 466
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEK------------------DSYLYYFILQHP-GR 1079
K +D+ + L E + C EK D +LY +L HP R
Sbjct: 467 KFIDMNPISQMADNLKEGIVECGAMEKVSFHMGSVISSLRLMTFQDLFLYTLLLYHPKHR 526
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDV 1136
TLVF NSIS+V+RLT+LL L+ L LH+SM Q+ RL++++RF ++ +IL+ATDV
Sbjct: 527 TLVFTNSISAVRRLTKLLQTLQLPALALHSSMAQKARLRSVERFSSPSSDPSTILIATDV 586
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
AARGLDI GI+ VIHYH PRT++ Y+HRSGRTARA G ++++ DE+ +++ +
Sbjct: 587 AARGLDIKGIDLVIHYHAPRTADTYVHRSGRTARAGASGKSVIICGPDEMVGVVRLAAKV 646
Query: 1197 E------KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWL 1241
KK+ L +D V+S +K R+ LA I +K K + DNWL
Sbjct: 647 HANMANGKKLPLESLELDRRVVSRVKPRVSLASRITDANIAKEKISAEDNWL 698
Score = 258 bits (660), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 177/519 (34%), Positives = 268/519 (51%), Gaps = 85/519 (16%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
ED ++ W + I+ L + F +PT +Q +P +L D++G A TGSGKT
Sbjct: 194 EDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQ-ILEGHDVIGKASTGSGKT 252
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFGIPIL E LE+ ++ + E + + + AL
Sbjct: 253 LAFGIPIL------------------------EHYLEKKRDDISAQKEQMSEKDSTPIAL 288
Query: 264 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
IL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L+ I++ TPGR+
Sbjct: 289 ILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLSGA-DIVIGTPGRV 347
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
WE + G + ++ +I +LV+DE DR++ GHF E++ IL+ + +E G
Sbjct: 348 WEILSTGQGLIRKMQQIKFLVVDEADRLLSEGHFKEVEQILNSL----------DRVEDG 397
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
P+ ++ ++ S RQT VFSAT L+ L K+ ++ + K + S+ L
Sbjct: 398 EVPDGEDQA-SEEESDPSSERQTLVFSATFHRDLQQKLAGKRKWTRGDIMDKKE-SMDYL 455
Query: 441 QDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
LN + PK +D+ + L E + C EK S+ H G
Sbjct: 456 LQKLNFREEKPKFIDMNPISQMADNLKEGIVECGAMEKVSF-------HMGSV------- 501
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSV 557
I S +++ +D +LY +L HP RTLVF NSIS+V
Sbjct: 502 ---ISSLRLMTF---------------------QDLFLYTLLLYHPKHRTLVFTNSISAV 537
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIE 614
+RLT+LL L+ L LH+SM Q+ RL++++RF + ++IL+ATDVAARGLDI GI+
Sbjct: 538 RRLTKLLQTLQLPALALHSSMAQKARLRSVERFSSPSSDPSTILIATDVAARGLDIKGID 597
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
VIHYH PRT++ Y+HRSGRTARA G +V++ DE+
Sbjct: 598 LVIHYHAPRTADTYVHRSGRTARAGASGKSVIICGPDEM 636
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPIDESVL 1291
D ++HRSGRTARA G ++++ DE+ +++ + KK+ L +D V+
Sbjct: 609 DTYVHRSGRTARAGASGKSVIICGPDEMVGVVRLAAKVHANMANGKKLPLESLELDRRVV 668
Query: 1292 SLIKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDENLIQPN 1340
S +K R+ LA I +K K + DNWL AA+D+ + D E + N
Sbjct: 669 SRVKPRVSLASRITDANIAKEKISAEDNWLRNAAEDLGVEYDSEEFDESN 718
Score = 49.3 bits (116), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L+ I++ TPG
Sbjct: 287 ALILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLSGA-DIVIGTPG 345
>gi|70991861|ref|XP_750779.1| ATP dependent RNA helicase [Aspergillus fumigatus Af293]
gi|66848412|gb|EAL88741.1| ATP dependent RNA helicase, putative [Aspergillus fumigatus Af293]
Length = 795
Score = 278 bits (711), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 189/532 (35%), Positives = 279/532 (52%), Gaps = 78/532 (14%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
ED ++ W + I+ L + F +PT +Q +P +L D++G A TGSGKT
Sbjct: 194 EDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQ-ILEGHDVIGKASTGSGKT 252
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFGIPIL E LE+ ++ + E + + + AL
Sbjct: 253 LAFGIPIL------------------------EHYLEKKRDDISAQKEQMSEKDSTPIAL 288
Query: 881 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
IL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L+ I++ TPGR+
Sbjct: 289 ILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLSGA-DIVIGTPGRV 347
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---DRVTMTET-------- 986
WE + G + ++ +I +LV+DE DR++ GHF E++ IL DRV E
Sbjct: 348 WEILSTGQGLIRKMQQIKFLVVDEADRLLSEGHFKEVEEILNSLDRVEDGEVPDGEDQAS 407
Query: 987 ------SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--P 1038
S RQT VFSAT L+ L K+ ++ + K + S+ L LN + P
Sbjct: 408 EEESDPSSERQTLVFSATFHRDLQQKLAGKRKWTRGDIMDKKE-SMDYLLQKLNFREEKP 466
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEK------------------DSYLYYFILQHP-GR 1079
K +D+ + L E + C EK D +LY +L HP R
Sbjct: 467 KFIDMNPISQMADNLKEGIVECGAMEKVSFHMGSVISSLRLMTFQDLFLYTLLLYHPKHR 526
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDV 1136
TLVF NSIS+V+RLT+LL L+ L LH+SM Q+ RL++++RF ++ +IL+ATDV
Sbjct: 527 TLVFTNSISAVRRLTKLLQTLQLPALALHSSMAQKARLRSVERFSSPSSDPSTILIATDV 586
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
AARGLDI GI+ VIHYH PRT++ Y+HRSGRTARA G ++++ DE+ +++ +
Sbjct: 587 AARGLDIKGIDLVIHYHAPRTADTYVHRSGRTARAGASGKSVIICGPDEMVGVVRLAAKV 646
Query: 1197 E------KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWL 1241
KK+ L +D V+S +K R+ LA I +K K + DNWL
Sbjct: 647 HANMANGKKLPLESLELDRRVVSRVKPRVSLASRITDANIAKEKISAEDNWL 698
Score = 258 bits (659), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 177/519 (34%), Positives = 268/519 (51%), Gaps = 85/519 (16%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
ED ++ W + I+ L + F +PT +Q +P +L D++G A TGSGKT
Sbjct: 194 EDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQ-ILEGHDVIGKASTGSGKT 252
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFGIPIL E LE+ ++ + E + + + AL
Sbjct: 253 LAFGIPIL------------------------EHYLEKKRDDISAQKEQMSEKDSTPIAL 288
Query: 264 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
IL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L+ I++ TPGR+
Sbjct: 289 ILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLSGA-DIVIGTPGRV 347
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
WE + G + ++ +I +LV+DE DR++ GHF E++ IL+ + +E G
Sbjct: 348 WEILSTGQGLIRKMQQIKFLVVDEADRLLSEGHFKEVEEILNSL----------DRVEDG 397
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
P+ ++ ++ S RQT VFSAT L+ L K+ ++ + K + S+ L
Sbjct: 398 EVPDGEDQA-SEEESDPSSERQTLVFSATFHRDLQQKLAGKRKWTRGDIMDKKE-SMDYL 455
Query: 441 QDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
LN + PK +D+ + L E + C EK S+ H G
Sbjct: 456 LQKLNFREEKPKFIDMNPISQMADNLKEGIVECGAMEKVSF-------HMGSV------- 501
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSV 557
I S +++ +D +LY +L HP RTLVF NSIS+V
Sbjct: 502 ---ISSLRLMTF---------------------QDLFLYTLLLYHPKHRTLVFTNSISAV 537
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIE 614
+RLT+LL L+ L LH+SM Q+ RL++++RF + ++IL+ATDVAARGLDI GI+
Sbjct: 538 RRLTKLLQTLQLPALALHSSMAQKARLRSVERFSSPSSDPSTILIATDVAARGLDIKGID 597
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
VIHYH PRT++ Y+HRSGRTARA G +V++ DE+
Sbjct: 598 LVIHYHAPRTADTYVHRSGRTARAGASGKSVIICGPDEM 636
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPIDESVL 1291
D ++HRSGRTARA G ++++ DE+ +++ + KK+ L +D V+
Sbjct: 609 DTYVHRSGRTARAGASGKSVIICGPDEMVGVVRLAAKVHANMANGKKLPLESLELDRRVV 668
Query: 1292 SLIKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDENLIQPN 1340
S +K R+ LA I +K K + DNWL AA+D+ + D E + N
Sbjct: 669 SRVKPRVSLASRITDANIAKEKISAEDNWLRNAAEDLGVEYDSEEFDESN 718
Score = 49.3 bits (116), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ HI + P ++A + GG+S +KQ R+L+ I++ TPG
Sbjct: 287 ALILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLSGA-DIVIGTPG 345
>gi|303311697|ref|XP_003065860.1| ATP-dependent RNA helicase MAK5, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240105522|gb|EER23715.1| ATP-dependent RNA helicase MAK5, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 783
Score = 278 bits (711), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 194/526 (36%), Positives = 284/526 (53%), Gaps = 79/526 (15%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V ++ W ++ + +L + F PT IQS +P A+L D++G A TGSGKTLAFG
Sbjct: 187 VDVSAWDSLDLSAELQTSLGRLKFSFPTPIQSACIP-AVLQGHDVIGKASTGSGKTLAFG 245
Query: 825 IPILTGIVNKLEN---PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
IPI+ + K PT +E++S E ALI
Sbjct: 246 IPIVEYFLGKYRGGRAPTASEESESTKEP---------------------------MALI 278
Query: 882 LAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
L+PTRELA Q+ H+ D + P V++A V GG+S KQ R+L I++ATPGRLW
Sbjct: 279 LSPTRELAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQQRLLADA-DIIIATPGRLW 337
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---DRVTMTE---------- 985
E + L++L KI +LVIDE DR++ GHF E++ IL D+V +TE
Sbjct: 338 EVVGSMTGFLSKLKKIRFLVIDEADRLLSEGHFKEVEEILNAIDKVEITEEAYGERSERE 397
Query: 986 ---------TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 1036
++PRQT VFSAT L+ L+ K + K + S++ L LN +
Sbjct: 398 PEPEPDEEKKAEPRQTLVFSATFHKGLQQKLSGKIRYRNDDLLDKKE-SMEYLLRKLNFR 456
Query: 1037 S--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRL 1093
PK +D+ + + L E + C +KD LY +L HP RTL+F NSIS+V+RL
Sbjct: 457 EERPKFIDVNPISQMAENLKEGLVQCAPMDKDLLLYTLLLYHPKHRTLIFTNSISAVRRL 516
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGIEHVI 1150
TQLL L LH+SM Q+ RL++++RF ++ IL+ATDVAARGLDI GI+ ++
Sbjct: 517 TQLLQNLNLPTFALHSSMAQKARLRSVERFSSLSSDPSSILVATDVAARGLDIKGIDLIV 576
Query: 1151 HYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF--------------NSL 1196
HYHVPRT++ Y+HRSGRTARA+ G ++++ +E ++ + +
Sbjct: 577 HYHVPRTADTYVHRSGRTARASASGKSILICAPEETTGVARLVAKIHSNKKDSSATESKM 636
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
EKKV L +D ++ ++ R+ LAK I E + +K K + D+WL
Sbjct: 637 EKKVPLQSVDLDRRIIDRLRPRVTLAKRITESILAKEKLSSEDDWL 682
Score = 244 bits (622), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 182/543 (33%), Positives = 267/543 (49%), Gaps = 102/543 (18%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V ++ W ++ + +L + F PT IQS +P A+L D++G A TGSGKTLAFG
Sbjct: 187 VDVSAWDSLDLSAELQTSLGRLKFSFPTPIQSACIP-AVLQGHDVIGKASTGSGKTLAFG 245
Query: 208 IPILTGIVNKLEN---PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264
IPI+ + K PT +E++S E ALI
Sbjct: 246 IPIVEYFLGKYRGGRAPTASEESESTKEP---------------------------MALI 278
Query: 265 LAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
L+PTRELA Q+ H+ D + P V++A V GG+S KQ R+L I++ATPGRLW
Sbjct: 279 LSPTRELAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQQRLLADA-DIIIATPGRLW 337
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
E + L++L KI +LVIDE DR++ GHF E++ IL+ + E ++ E+
Sbjct: 338 EVVGSMTGFLSKLKKIRFLVIDEADRLLSEGHFKEVEEILNAIDKVEITE------EAYG 391
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 441
+ + ++PRQT VFSAT L+ L+ K + K + S++ L
Sbjct: 392 ERSEREPEPEPDEEKKAEPRQTLVFSATFHKGLQQKLSGKIRYRNDDLLDKKE-SMEYLL 450
Query: 442 DLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499
LN + PK +D+ + + L E + C +KD LY +L HP
Sbjct: 451 RKLNFREERPKFIDVNPISQMAENLKEGLVQCAPMDKDLLLYTLLLYHP----------- 499
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKR 559
KH RTL+F NSIS+V+R
Sbjct: 500 ----------------------------KH----------------RTLIFTNSISAVRR 515
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRF---RDQNNSILLATDVAARGLDIPGIEHV 616
LTQLL L LH+SM Q+ RL++++RF +SIL+ATDVAARGLDI GI+ +
Sbjct: 516 LTQLLQNLNLPTFALHSSMAQKARLRSVERFSSLSSDPSSILVATDVAARGLDIKGIDLI 575
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEAD 676
+HYHVPRT++ Y+HRSGRTARA+ G ++++ +E + + N ++ E+
Sbjct: 576 VHYHVPRTADTYVHRSGRTARASASGKSILICAPEETTGVARLVAKIHSNKKDSSATESK 635
Query: 677 KEK 679
EK
Sbjct: 636 MEK 638
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ D + P V++A V GG+S KQ R+L I++ATPG
Sbjct: 276 ALILSPTRELAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQQRLLADA-DIIIATPG 334
Query: 1413 ALSLKRIDLAKSIEYLESKIKKNR 1436
L ++ S+ SK+KK R
Sbjct: 335 RL----WEVVGSMTGFLSKLKKIR 354
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 15/116 (12%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF--------------NSLEKKVDLPD 1283
D ++HRSGRTARA+ G ++++ +E ++ + +EKKV L
Sbjct: 585 DTYVHRSGRTARASASGKSILICAPEETTGVARLVAKIHSNKKDSSATESKMEKKVPLQS 644
Query: 1284 FPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+D ++ ++ R+ LAK I E + +K K + D+WL AA+D+ + D + +
Sbjct: 645 VDLDRRIIDRLRPRVTLAKRITESILAKEKLSSEDDWLRSAAEDLGVDYDSDEFAE 700
>gi|367040293|ref|XP_003650527.1| hypothetical protein THITE_2110069 [Thielavia terrestris NRRL 8126]
gi|346997788|gb|AEO64191.1| hypothetical protein THITE_2110069 [Thielavia terrestris NRRL 8126]
Length = 775
Score = 278 bits (710), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 183/532 (34%), Positives = 275/532 (51%), Gaps = 87/532 (16%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
ED V M+ WV + + ++ A+ + F PT IQ+ +P ++ D++G A TGSGKT
Sbjct: 187 EDDDVDMSHWVPLGLSQQMLSAIARLKFAKPTAIQASAIPE-VMNGHDVIGKAVTGSGKT 245
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFGIPI+ + K N + E + + AL
Sbjct: 246 LAFGIPIVESWLAKATNGIQTAE------------------------------KKQPIAL 275
Query: 881 ILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
IL+PTRELA Q+ +H+ L AG T + V GG++ +KQ R L K I++ TPGR+W
Sbjct: 276 ILSPTRELAHQIADHLKQLCAGLVTSPYICSVTGGLAVQKQQRQLEKA-DIVIGTPGRMW 334
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS----------- 987
E + + LT L + +LV+DE DR+++ GHF E + IL + T
Sbjct: 335 EVMSTSNSVLTALRGVGFLVVDEADRLLKDGHFKEAEEILKALDRTAPGDDEEGSDDEDE 394
Query: 988 ---QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVD 1042
RQT VFSAT +L+ L G+++ + + + S++ L LN + PK +D
Sbjct: 395 APRHSRQTLVFSATFNKALQQKL---AGKARYNLMGEAE-SLEYLLKKLNFREPRPKFLD 450
Query: 1043 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLK 1101
+ + L E I C EKD YLY +L P R L+F NSI++V+RLT L L
Sbjct: 451 TNPVSQMAENLKEGLIQCGDLEKDLYLYAVLLLQPSRRALIFTNSINTVRRLTSFLQNLN 510
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQN---------------NSILLATDVAARGLDIPGI 1146
S LH+ M Q+ RL++++RF+ + +SIL+ATDVAARGLDIP +
Sbjct: 511 LSASALHSDMEQKARLRSIERFKAEKPSANDKGTGKSPAAASSILVATDVAARGLDIPNV 570
Query: 1147 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE-IP---LYIKMFNSLEKKVDL 1202
+ VIHYHVPR+++ Y+HRSGRTARA N G++++L E +P L K+ + +
Sbjct: 571 DLVIHYHVPRSADDYVHRSGRTARAANSGVSVLLCGPKEAVPTQRLIAKVHAAAAAASNR 630
Query: 1203 P------------DFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
P +D ++S ++ R+ LAK I E +K K + D+W+
Sbjct: 631 PTSKLTKAGVGVQTIDLDRRLVSHLRPRVTLAKKITETTLAKEKGAKEDDWM 682
Score = 232 bits (592), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 164/528 (31%), Positives = 240/528 (45%), Gaps = 124/528 (23%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
ED V M+ WV + + ++ A+ + F PT IQ+ +P ++ D++G A TGSGKT
Sbjct: 187 EDDDVDMSHWVPLGLSQQMLSAIARLKFAKPTAIQASAIPE-VMNGHDVIGKAVTGSGKT 245
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFGIPI+ + K N + E + + AL
Sbjct: 246 LAFGIPIVESWLAKATNGIQTAE------------------------------KKQPIAL 275
Query: 264 ILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
IL+PTRELA Q+ +H+ L AG T + V GG++ +KQ R L K I++ TPGR+W
Sbjct: 276 ILSPTRELAHQIADHLKQLCAGLVTSPYICSVTGGLAVQKQQRQLEKA-DIVIGTPGRMW 334
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
E + + LT L + +LV+DE DR+++ GHF E + IL + T
Sbjct: 335 EVMSTSNSVLTALRGVGFLVVDEADRLLKDGHFKEAEEILKALDRTA------------- 381
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 441
P RQT VFSAT +L+ L G+++ + + + S++ L
Sbjct: 382 -PGDDEEGSDDEDEAPRHSRQTLVFSATFNKALQQKL---AGKARYNLMGEAE-SLEYLL 436
Query: 442 DLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499
LN + PK +D + + L E I C EKD YLY +L P R
Sbjct: 437 KKLNFREPRPKFLDTNPVSQMAENLKEGLIQCGDLEKDLYLYAVLLLQPSR--------- 487
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKR 559
+ + T I + LT
Sbjct: 488 ------RALIFTNSINTVRRLT-------------------------------------- 503
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---------------NSILLATDVA 604
L L S LH+ M Q+ RL++++RF+ + +SIL+ATDVA
Sbjct: 504 --SFLQNLNLSASALHSDMEQKARLRSIERFKAEKPSANDKGTGKSPAAASSILVATDVA 561
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
ARGLDIP ++ VIHYHVPR+++ Y+HRSGRTARA N G++V+L E
Sbjct: 562 ARGLDIPNVDLVIHYHVPRSADDYVHRSGRTARAANSGVSVLLCGPKE 609
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
ALIL+PTRELA Q+ +H+ L AG T + V GG++ +KQ R L K I++ TPG
Sbjct: 274 ALILSPTRELAHQIADHLKQLCAGLVTSPYICSVTGGLAVQKQQRQLEKA-DIVIGTPGR 332
Query: 1414 L 1414
+
Sbjct: 333 M 333
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDE-IP---LYIKMFNSLEKKVDLP----------- 1282
D+++HRSGRTARA N G++++L E +P L K+ + + P
Sbjct: 583 DDYVHRSGRTARAANSGVSVLLCGPKEAVPTQRLIAKVHAAAAAASNRPTSKLTKAGVGV 642
Query: 1283 -DFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+D ++S ++ R+ LAK I E +K K + D+W+ AA+++ + D E L Q
Sbjct: 643 QTIDLDRRLVSHLRPRVTLAKKITETTLAKEKGAKEDDWMRAAAEELGVEYDPEELDQ 700
>gi|327302418|ref|XP_003235901.1| ATP-dependent RNA helicase MAK5 [Trichophyton rubrum CBS 118892]
gi|326461243|gb|EGD86696.1| ATP-dependent RNA helicase MAK5 [Trichophyton rubrum CBS 118892]
Length = 746
Score = 277 bits (709), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 187/520 (35%), Positives = 274/520 (52%), Gaps = 62/520 (11%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
NE+ V ++ W ++ + +L + F PT IQ +P +L +D++G A TGSGK
Sbjct: 160 NEEPDVDVSAWDSLDLRPELQTSLSRLKFAQPTPIQKATIPE-ILGGRDVIGKAATGSGK 218
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-Y 878
TLAFG+PIL ++N+ +E+ +T + K+ +K
Sbjct: 219 TLAFGLPILQYLLNR-------------------------QEQHPSTLLALPKSSDKTPI 253
Query: 879 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 935
ALIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPG
Sbjct: 254 ALILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVHKQQRQLAEA-DIIVGTPG 312
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ------- 988
RLW+ + LT+L I +LV+DE DR++ GHF E+ +L + T TS
Sbjct: 313 RLWDMVSSTPQILTKLRSIKFLVVDEADRLLSEGHFKEVGELLSALDRTRTSDQDVDETP 372
Query: 989 -------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PK 1039
RQT VFSAT L+ L K+ S + S++ L L K P+
Sbjct: 373 EEEEEPAGRQTLVFSATFQKGLQQKLA-KRDHSFHDNLLDKKESMEYLLKELRFKDEKPR 431
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLT 1098
+D+ + L E I C EKD YLY +L +P RTLVF NSISSV+RLT L
Sbjct: 432 FIDVNPVSQMADNLKEGIIECSAMEKDLYLYSVLLFYPRYRTLVFTNSISSVRRLTHFLQ 491
Query: 1099 MLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVP 1155
L L LH+SM Q+ RL+ ++RF + IL+ATD+AARGLD+ GI+ VIHYHVP
Sbjct: 492 NLNLPALSLHSSMAQKARLRAVERFSSPTADPSPILIATDIAARGLDMQGIDLVIHYHVP 551
Query: 1156 RTSEIYIHRSGRTARANNEGLTLVLIESDEIP----LYIKMFNSLEKK-----VDLPDFP 1206
RT++ YIHRSGRTARA+ G ++++ +E L K+ ++ ++K V L
Sbjct: 552 RTADTYIHRSGRTARASASGKSILICAPEETAGVTRLVAKVHHTQKRKPSSKNVQLHSIH 611
Query: 1207 IDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRSG 1245
+D +++ ++ R +L+K I E +K K + WL +
Sbjct: 612 LDRGIVTRLRPRANLSKKITESTLAKEKISSETGWLRSAA 651
Score = 255 bits (652), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 178/518 (34%), Positives = 259/518 (50%), Gaps = 104/518 (20%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
NE+ V ++ W ++ + +L + F PT IQ +P +L +D++G A TGSGK
Sbjct: 160 NEEPDVDVSAWDSLDLRPELQTSLSRLKFAQPTPIQKATIPE-ILGGRDVIGKAATGSGK 218
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-Y 261
TLAFG+PIL ++N+ +E+ +T + K+ +K
Sbjct: 219 TLAFGLPILQYLLNR-------------------------QEQHPSTLLALPKSSDKTPI 253
Query: 262 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 318
ALIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPG
Sbjct: 254 ALILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVHKQQRQLAEA-DIIVGTPG 312
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RLW+ + LT+L I +LV+DE DR++ GHF E+ +L + T TS
Sbjct: 313 RLWDMVSSTPQILTKLRSIKFLVVDEADRLLSEGHFKEVGELLSALDRTRTSD------- 365
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
+++ + E RQT VFSAT L+ +K++K D S
Sbjct: 366 -------QDVDETPEEEEEPAGRQTLVFSATFQKGLQ------------QKLAKRDHSFH 406
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
+LL D+K+S Y L +E++
Sbjct: 407 --DNLL-----------------------------DKKESMEY----------LLKELR- 424
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSV 557
+ P+ +D+ + L E I C EKD YLY +L +P RTLVF NSISSV
Sbjct: 425 -FKDEKPRFIDVNPVSQMADNLKEGIIECSAMEKDLYLYSVLLFYPRYRTLVFTNSISSV 483
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIE 614
+RLT L L L LH+SM Q+ RL+ ++RF + IL+ATD+AARGLD+ GI+
Sbjct: 484 RRLTHFLQNLNLPALSLHSSMAQKARLRAVERFSSPTADPSPILIATDIAARGLDMQGID 543
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
VIHYHVPRT++ YIHRSGRTARA+ G ++++ +E
Sbjct: 544 LVIHYHVPRTADTYIHRSGRTARASASGKSILICAPEE 581
Score = 48.1 bits (113), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 10/111 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIP----LYIKMFNSLEKK-----VDLPDFPIDE 1288
D ++HRSGRTARA+ G ++++ +E L K+ ++ ++K V L +D
Sbjct: 555 DTYIHRSGRTARASASGKSILICAPEETAGVTRLVAKVHHTQKRKPSSKNVQLHSIHLDR 614
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+++ ++ R +L+K I E +K K + WL AA+D+ + D E +
Sbjct: 615 GIVTRLRPRANLSKKITESTLAKEKISSETGWLRSAAEDLGVDYDSEEFAE 665
Score = 48.1 bits (113), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPG
Sbjct: 254 ALILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVHKQQRQLAEA-DIIVGTPG 312
Query: 1413 AL 1414
L
Sbjct: 313 RL 314
>gi|400598353|gb|EJP66070.1| ATP-dependent RNA helicase MAK5 [Beauveria bassiana ARSEF 2860]
Length = 799
Score = 277 bits (709), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 194/561 (34%), Positives = 282/561 (50%), Gaps = 77/561 (13%)
Query: 733 KKLKQKKKKKQTYTSANKELLEVDTSNNE--DMFVQMAEWVKFNIPETIIRALYQKGFKT 790
+KL+ + KKQ + +N+E D + + +WV N+ + A+ + GF +
Sbjct: 152 RKLEAQTSKKQKGDVHTNPFGVLMNANDEYDDSGLDLKKWVALNLSPATVSAIGKLGFAS 211
Query: 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 850
PT+IQ +P + D++G A+TGSGKTLAFGIPI+ + LE
Sbjct: 212 PTEIQEQTIPH-ITGGADVIGKAQTGSGKTLAFGIPIV----------------ERWLE- 253
Query: 851 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA-- 908
L + +E KK R A+IL+PTRELA Q+ +HI P A
Sbjct: 254 -----LHQSTDEEDEAEAEAKKERKGPIAVILSPTRELAKQIGDHIKALCDGLPTAAAPY 308
Query: 909 -CVV-GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT-ELYKINYLVIDETDRM 965
CVV GG+S +KQ R L K I++ TPGRLWE + G+ L E +I +LV+DE DR+
Sbjct: 309 VCVVTGGLSIQKQQRQLAKA-DIVIGTPGRLWEVLD-GNMKLQDEFCRIQFLVVDEADRL 366
Query: 966 IESGHFPELKNI---LDR---------------------VTMTETSQPRQTFVFSATLTH 1001
++G F E + I LDR PRQT VFSAT
Sbjct: 367 FKAGQFKEAELIIGALDRRDPEAEDDSSDDEDFSEEEDEDADARHPPPRQTLVFSATFDK 426
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
L+ L K S S+ + + +Q L PK +D + + L E I C
Sbjct: 427 GLQTKLAGKTRPSASQGATDEEKMAYLMQCLKFRGQPKFIDANPVEQMAEGLREGLIECG 486
Query: 1062 HDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
EKD YLY +L +PGR TLVF NSIS+V+R+ L L PLH+ M Q+ RL++L
Sbjct: 487 AMEKDLYLYSVLLLNPGRRTLVFANSISAVRRVAPFLQNLNVPAQPLHSQMAQKARLRSL 546
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+RF S+L+ATDVAARGLDI ++ V+HYHVPRT++ Y+HRSGRTAR G++++L
Sbjct: 547 ERFAATPGSVLVATDVAARGLDIHAVDLVLHYHVPRTADTYVHRSGRTARGARAGVSVLL 606
Query: 1181 IESDEIPLYIKMFNSLEKKVD-------------------LPDFPIDESVLSLIKKRIDL 1221
DE+ ++ + K + P+D+ +++ +K R DL
Sbjct: 607 CGPDEVLPTRRLAAKVHAKRQQQQQQRGSSSSSSKSYNHIIETLPLDKKIVARLKPRADL 666
Query: 1222 AKSI-EYLESKIKKNRPDNWL 1241
+K + + + +K K + D WL
Sbjct: 667 SKKLADAVLAKEKAHSEDAWL 687
Score = 255 bits (652), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 202/625 (32%), Positives = 290/625 (46%), Gaps = 111/625 (17%)
Query: 44 QEAENNEEEVEEA--------EADKEKTEG-INVTVSSKKKKLKRKQNPSQVEVSELSAN 94
QEA+ ++ EV E + D K G N T + K+ K + Q+ +
Sbjct: 84 QEADGDDGEVFEGFGDDGDDGDDDNNKVNGKTNETDTGKETKKAKAQDAKSKTEKKTKKK 143
Query: 95 TNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWV 154
T P+ Q K E S KK+K +T+ L+ + +D + + +WV
Sbjct: 144 TATPNAQDRKLEAQTS----------KKQKGDVHTNPFGVLMNAN-DEYDDSGLDLKKWV 192
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N+ + A+ + GF +PT+IQ +P + D++G A+TGSGKTLAFGIPI+
Sbjct: 193 ALNLSPATVSAIGKLGFASPTEIQEQTIPH-ITGGADVIGKAQTGSGKTLAFGIPIV--- 248
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+ LE L + +E KK R A+IL+PTRELA Q
Sbjct: 249 -------------ERWLE------LHQSTDEEDEAEAEAKKERKGPIAVILSPTRELAKQ 289
Query: 275 VQNHILDAGKYTPVKVA---CVV-GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
+ +HI P A CVV GG+S +KQ R L K I++ TPGRLWE + G+
Sbjct: 290 IGDHIKALCDGLPTAAAPYVCVVTGGLSIQKQQRQLAKA-DIVIGTPGRLWEVLD-GNMK 347
Query: 331 LT-ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
L E +I +LV+DE DR+ ++G F E + I+ + + + + +
Sbjct: 348 LQDEFCRIQFLVVDEADRLFKAGQFKEAELIIGALDRRDPEAEDDSSDDE----DFSEEE 403
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
D PRQT VFSAT L+ L K S S+ +
Sbjct: 404 DEDADARHPPPRQTLVFSATFDKGLQTKLAGKTRPSASQGATD----------------- 446
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
+EK +YL +Q L PK +D
Sbjct: 447 ------------------------EEKMAYL---------------MQCLKFRGQPKFID 467
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLK 568
+ + L E I C EKD YLY +L +PGR TLVF NSIS+V+R+ L L
Sbjct: 468 ANPVEQMAEGLREGLIECGAMEKDLYLYSVLLLNPGRRTLVFANSISAVRRVAPFLQNLN 527
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
PLH+ M Q+ RL++L+RF S+L+ATDVAARGLDI ++ V+HYHVPRT++ Y
Sbjct: 528 VPAQPLHSQMAQKARLRSLERFAATPGSVLVATDVAARGLDIHAVDLVLHYHVPRTADTY 587
Query: 629 IHRSGRTARANNEGLTVVLIESDEI 653
+HRSGRTAR G++V+L DE+
Sbjct: 588 VHRSGRTARGARAGVSVLLCGPDEV 612
Score = 47.4 bits (111), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVA---CVV-GGMSTEKQLRILNKCPHILVATP 1411
A+IL+PTRELA Q+ +HI P A CVV GG+S +KQ R L K I++ TP
Sbjct: 277 AVILSPTRELAKQIGDHIKALCDGLPTAAAPYVCVVTGGLSIQKQQRQLAKA-DIVIGTP 335
Query: 1412 GAL 1414
G L
Sbjct: 336 GRL 338
>gi|68482156|ref|XP_714962.1| hypothetical protein CaO19.11024 [Candida albicans SC5314]
gi|68482283|ref|XP_714899.1| hypothetical protein CaO19.3540 [Candida albicans SC5314]
gi|74656286|sp|Q59ZH9.1|MAK5_CANAL RecName: Full=ATP-dependent RNA helicase MAK5
gi|46436498|gb|EAK95859.1| hypothetical protein CaO19.3540 [Candida albicans SC5314]
gi|46436563|gb|EAK95923.1| hypothetical protein CaO19.11024 [Candida albicans SC5314]
Length = 782
Score = 276 bits (707), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 188/533 (35%), Positives = 287/533 (53%), Gaps = 64/533 (12%)
Query: 748 ANKELLEVDTSN-----NEDMFVQMAEWVKFNIPETI----IRALYQKGFKTPTKIQSMV 798
+N EL V +N +D + + W + ++ +I + L Q FK PT IQ
Sbjct: 168 SNDELNAVSFANLDLPLPDDNEINLPNWQEGDLGSSISAYTLYGLSQLDFKKPTPIQKET 227
Query: 799 MPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 858
+P AL + KD++G A TGSGKTLA+GIPIL + L N +++ D
Sbjct: 228 IPIAL-SGKDVIGKATTGSGKTLAYGIPILEKYIQSL-NLIKQNNKD------------- 272
Query: 859 LEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMS 915
K N +I APTRELA QV +H+ KY+P+ + + GG+S
Sbjct: 273 -------------KKINHPTGIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGLS 319
Query: 916 TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELK 975
+KQ R+L P I+VATPGR+ E +Q L I+ +V+DE DR+++ GHF E +
Sbjct: 320 IQKQQRLLRHGPGIIVATPGRMLELVQGDSELAKRLASIDIIVLDEADRLLQDGHFDEFE 379
Query: 976 NIL-----DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030
IL +R QT VFSAT + L L+ + + KS + D ++ L
Sbjct: 380 KILELFGKNRPKSKSIEWKWQTLVFSATFSRDLFRKLD-RHQKGKSSSLMGNDEIVQLLN 438
Query: 1031 DLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 1088
+ L K P +VD K ++ +TE+ + C E+D YLYYF+L + G TLVF NSI
Sbjct: 439 EKLKFKDKKPTLVDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGSTLVFANSID 498
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNN--SILLATDVAARGLDIP 1144
SVKRL LL L +H+SM Q+QRL+ L++F++ Q N ++L+A+DVAARGLDIP
Sbjct: 499 SVKRLVPLLNNLNIPAFSIHSSMIQKQRLRALEKFKEASQKNEVAVLVASDVAARGLDIP 558
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-------E 1197
I+HV+HYH+PR++++YIHRSGRTARA EG++ + E ++ L E
Sbjct: 559 NIDHVVHYHLPRSADVYIHRSGRTARAGKEGVSAMFCSPQEASGPLRKLRRLVAGNSNKE 618
Query: 1198 KKVDLPD----FPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHRSG 1245
++++ + PI+ ++S IK R++++ + S + D+W+ ++
Sbjct: 619 SRLNMHNDVKLLPIEMDLVSQIKPRVEISSKLADASISSTATRKEDSWVKQAA 671
Score = 147 bits (371), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 127/402 (31%), Positives = 192/402 (47%), Gaps = 67/402 (16%)
Query: 106 EEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSN-----NEDMFVQMAEWVKFNIPE 160
E Q D +S+++ K + S N EL V +N +D + + W + ++
Sbjct: 144 ENNQEDANTSERVSNNDKDDKLAES-NDELNAVSFANLDLPLPDDNEINLPNWQEGDLGS 202
Query: 161 TI----IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+I + L Q FK PT IQ +P AL + KD++G A TGSGKTLA+GIPIL +
Sbjct: 203 SISAYTLYGLSQLDFKKPTPIQKETIPIAL-SGKDVIGKATTGSGKTLAYGIPILEKYIQ 261
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
L N +++ D K N +I APTRELA QV
Sbjct: 262 SL-NLIKQNNKD--------------------------KKINHPTGIIFAPTRELAHQVV 294
Query: 277 NHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333
+H+ KY+P+ + + GG+S +KQ R+L P I+VATPGR+ E +Q
Sbjct: 295 DHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPGRMLELVQGDSELAKR 354
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
L I+ +V+DE DR+++ GHF E + IL+ + ++P+ IE
Sbjct: 355 LASIDIIVLDEADRLLQDGHFDEFEKILE---LFGKNRPKSKSIE--------------- 396
Query: 394 MTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKI 451
QT VFSAT + L L+ + + KS + D ++ L + L K P +
Sbjct: 397 -----WKWQTLVFSATFSRDLFRKLD-RHQKGKSSSLMGNDEIVQLLNEKLKFKDKKPTL 450
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
VD K ++ +TE+ + C E+D YLYYF+L + G TL
Sbjct: 451 VDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGSTLV 492
Score = 145 bits (366), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 122/188 (64%), Gaps = 12/188 (6%)
Query: 494 EEIQDLLN------IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547
+EI LLN K P +VD K ++ +TE+ + C E+D YLYYF+L + G T
Sbjct: 431 DEIVQLLNEKLKFKDKKPTLVDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGST 490
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNN--SILLATDV 603
LVF NSI SVKRL LL L +H+SM Q+QRL+ L++F++ Q N ++L+A+DV
Sbjct: 491 LVFANSIDSVKRLVPLLNNLNIPAFSIHSSMIQKQRLRALEKFKEASQKNEVAVLVASDV 550
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI--PLKTKFNL 661
AARGLDIP I+HV+HYH+PR++++YIHRSGRTARA EG++ + E PL+ L
Sbjct: 551 AARGLDIPNIDHVVHYHLPRSADVYIHRSGRTARAGKEGVSAMFCSPQEASGPLRKLRRL 610
Query: 662 QEEENNEE 669
+N+E
Sbjct: 611 VAGNSNKE 618
Score = 61.6 bits (148), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPG 1412
+I APTRELA QV +H+ KY+P+ + + GG+S +KQ R+L P I+VATPG
Sbjct: 280 GIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPG 339
Query: 1413 AL 1414
+
Sbjct: 340 RM 341
>gi|241951434|ref|XP_002418439.1| ATP-dependent RNA helicase, putative; maintenance of killer protein,
putative [Candida dubliniensis CD36]
gi|223641778|emb|CAX43740.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 758
Score = 276 bits (706), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 182/515 (35%), Positives = 281/515 (54%), Gaps = 59/515 (11%)
Query: 761 EDMFVQMAEWVKFNIPETI----IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
+D + + W + ++ +I + L Q FK PT IQ +P AL + KD++G A TG
Sbjct: 162 DDNEINLPNWQEGDLGSSISAYTLYGLSQLNFKKPTPIQKETIPIAL-SGKDVIGKATTG 220
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
SGKTLA+GIPIL + L N +++ D+ + N
Sbjct: 221 SGKTLAYGIPILEKYIQSL-NLIKQNNKDNKI--------------------------NH 253
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVAT 933
+I APTRELA QV +H+ KY+P+ + + GG+S +KQ R+L P I+VAT
Sbjct: 254 PTGIIFAPTRELAHQVVDHLNSLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVAT 313
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-----DRVTMTETSQ 988
PGR+ E IQ L + +V+DE DR+++ GHF E + IL +R
Sbjct: 314 PGRMLELIQGDSELAKRLASTDIIVLDEADRLLQDGHFDEFEKILELFGKNRPENKSIEW 373
Query: 989 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEK 1046
QT VFSAT + L L+ + + KS + D ++ L + L K P ++D K
Sbjct: 374 KWQTLVFSATFSRDLFRKLD-RHQKGKSSSLMGNDEIVQLLNEKLKFKDKKPTLIDANPK 432
Query: 1047 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 1106
++ +TE+ + C E+D YLYYF+L + G TLVF NSI SVKRL LL L
Sbjct: 433 EIVSGQITEALVECGPTERDLYLYYFLLMYKGSTLVFANSIDSVKRLVPLLNNLNIPAFS 492
Query: 1107 LHASMNQRQRLKNLDRFRD--QNN--SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162
+H+SM Q+QRL+ L++F++ Q N S+L+A+DVAARGLDIP I+HV+HYH+PR++++YI
Sbjct: 493 IHSSMIQKQRLRALEKFKEASQKNEVSVLVASDVAARGLDIPNIDHVVHYHLPRSADVYI 552
Query: 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-------EKKVDLPD----FPIDESV 1211
HRSGRTARA EG++++ E ++ L E ++++ + PI+ +
Sbjct: 553 HRSGRTARAGKEGVSVMFCSPQEASGPLRKLRRLVASNSNKESRLNMHNDVKLLPIEMDL 612
Query: 1212 LSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHRSG 1245
+S IK R++++ + S + D+W+ ++
Sbjct: 613 VSQIKPRVEISSKLADASISSTATRKEDSWVKQAA 647
Score = 147 bits (372), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/188 (46%), Positives = 123/188 (65%), Gaps = 12/188 (6%)
Query: 494 EEIQDLLN------IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547
+EI LLN K P ++D K ++ +TE+ + C E+D YLYYF+L + G T
Sbjct: 407 DEIVQLLNEKLKFKDKKPTLIDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGST 466
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNN--SILLATDV 603
LVF NSI SVKRL LL L +H+SM Q+QRL+ L++F++ Q N S+L+A+DV
Sbjct: 467 LVFANSIDSVKRLVPLLNNLNIPAFSIHSSMIQKQRLRALEKFKEASQKNEVSVLVASDV 526
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI--PLKTKFNL 661
AARGLDIP I+HV+HYH+PR++++YIHRSGRTARA EG++V+ E PL+ L
Sbjct: 527 AARGLDIPNIDHVVHYHLPRSADVYIHRSGRTARAGKEGVSVMFCSPQEASGPLRKLRRL 586
Query: 662 QEEENNEE 669
+N+E
Sbjct: 587 VASNSNKE 594
Score = 144 bits (363), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 174/359 (48%), Gaps = 61/359 (16%)
Query: 144 EDMFVQMAEWVKFNIPETI----IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
+D + + W + ++ +I + L Q FK PT IQ +P AL + KD++G A TG
Sbjct: 162 DDNEINLPNWQEGDLGSSISAYTLYGLSQLNFKKPTPIQKETIPIAL-SGKDVIGKATTG 220
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKTLA+GIPIL + L N +++ D+ + N
Sbjct: 221 SGKTLAYGIPILEKYIQSL-NLIKQNNKDNKI--------------------------NH 253
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVAT 316
+I APTRELA QV +H+ KY+P+ + + GG+S +KQ R+L P I+VAT
Sbjct: 254 PTGIIFAPTRELAHQVVDHLNSLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVAT 313
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+ E IQ L + +V+DE DR+++ GHF E + IL+ + ++P
Sbjct: 314 PGRMLELIQGDSELAKRLASTDIIVLDEADRLLQDGHFDEFEKILE---LFGKNRPENKS 370
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
IE QT VFSAT + L L+ + + KS + D
Sbjct: 371 IE--------------------WKWQTLVFSATFSRDLFRKLD-RHQKGKSSSLMGNDEI 409
Query: 437 IKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
++ L + L K P ++D K ++ +TE+ + C E+D YLYYF+L + G TL
Sbjct: 410 VQLLNEKLKFKDKKPTLIDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGSTLV 468
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPG 1412
+I APTRELA QV +H+ KY+P+ + + GG+S +KQ R+L P I+VATPG
Sbjct: 256 GIIFAPTRELAHQVVDHLNSLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPG 315
Query: 1413 AL 1414
+
Sbjct: 316 RM 317
Score = 45.8 bits (107), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 25/154 (16%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-------EKKVDLPD----FPI 1286
D ++HRSGRTARA EG++++ E ++ L E ++++ + PI
Sbjct: 549 DVYIHRSGRTARAGKEGVSVMFCSPQEASGPLRKLRRLVASNSNKESRLNMHNDVKLLPI 608
Query: 1287 DESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDM-------------DIIID 1332
+ ++S IK R++++ + S + D+W+++AA+D+ DII
Sbjct: 609 EMDLVSQIKPRVEISSKLADASISSTATRKEDSWVKQAAEDLGVEDLSGLEDFEDDIIKK 668
Query: 1333 DENLIQPNQLLIFESRNLRYSWDALILAPTRELA 1366
+ L E++ LRY +L+ P ++ A
Sbjct: 669 QRKRKEGKMLSKEETKALRYELKSLLANPIKKNA 702
>gi|406859182|gb|EKD12251.1| DEAD/DEAH box helicase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 762
Score = 276 bits (706), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 197/517 (38%), Positives = 275/517 (53%), Gaps = 65/517 (12%)
Query: 752 LLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVG 811
LLE D E ++ W + ++ + AL + GF+ PT IQS +P ++A D+VG
Sbjct: 184 LLEEDAVEEE---TDVSAWTELDLSPDTLSALSKLGFQKPTLIQSSAIPE-IMAGHDVVG 239
Query: 812 AAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 871
A TGSGKTLAFGIPIL + E +L+E+ +K
Sbjct: 240 KASTGSGKTLAFGIPILESWI---------------------ETYGQLDEDE------LK 272
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHI 929
+R ALIL+PTRELA Q+ HI K P VA V GG+S +KQ R L K I
Sbjct: 273 ASRPPT-ALILSPTRELAHQLTEHITALCKGLPSAPYVAAVTGGLSVQKQQRQLAKA-DI 330
Query: 930 LVATPGRLWEFIQLGHFHLTELY-KINYLVIDETDRMIESGHFPELKNI---LDRVTMT- 984
++ TPGRLWE + LT + KI +LV+DE DR++ GHF E + I LDR
Sbjct: 331 VIGTPGRLWEVMS-SSIELTAAFKKIKFLVVDEADRLLTEGHFREAEQIIGSLDRQQDAD 389
Query: 985 ---ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PK 1039
E RQT VFSAT L+ L K Q + S++ L LN + PK
Sbjct: 390 EDDEIVPTRQTLVFSATFHKGLQQKLAGKGKQG----LMDDSESMEYLLKKLNFREDKPK 445
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLT 1098
VD+ + + L E + C EKD YLY +L HP RTL+F NSI SV+RLT LL
Sbjct: 446 FVDVNPISQMAEGLKEGMVECAGTEKDLYLYSLLLYHPNQRTLIFTNSIHSVRRLTPLLQ 505
Query: 1099 MLKCSPLPLHASMNQRQRLKNLDRFRD--QNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L LH+ M Q+ R+++++RF +SIL+ATDVAARGLDI G++ VIHYH+PR
Sbjct: 506 GLNLQANALHSQMAQKARMRSIERFSSPKSTSSILVATDVAARGLDIGGVQLVIHYHLPR 565
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF------NSL-----EKKVDLPDF 1205
+++Y+HRSGRTAR + G ++++ +E+ ++ N+L + K +
Sbjct: 566 AADMYVHRSGRTARGSASGTSILMCAPEEVVGMRRLVAKVHAQNALAGGGSKSKYYMRSL 625
Query: 1206 PIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
ID V++ +K R+ LAK I + +K KK D W+
Sbjct: 626 DIDRKVVARLKPRVTLAKRIADSTLAKEKKGHDDEWV 662
Score = 147 bits (372), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 172/364 (47%), Gaps = 65/364 (17%)
Query: 135 LLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVG 194
LLE D E ++ W + ++ + AL + GF+ PT IQS +P ++A D+VG
Sbjct: 184 LLEEDAVEEE---TDVSAWTELDLSPDTLSALSKLGFQKPTLIQSSAIPE-IMAGHDVVG 239
Query: 195 AAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254
A TGSGKTLAFGIPIL + E +L+E+ +K
Sbjct: 240 KASTGSGKTLAFGIPILESWI---------------------ETYGQLDEDE------LK 272
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHI 312
+R ALIL+PTRELA Q+ HI K P VA V GG+S +KQ R L K I
Sbjct: 273 ASRPPT-ALILSPTRELAHQLTEHITALCKGLPSAPYVAAVTGGLSVQKQQRQLAKA-DI 330
Query: 313 LVATPGRLWEFIQLGHFHLTELY-KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 371
++ TPGRLWE + LT + KI +LV+DE DR++ GHF E + I+ + + +
Sbjct: 331 VIGTPGRLWEVMS-SSIELTAAFKKIKFLVVDEADRLLTEGHFREAEQIIGSLDRQQDAD 389
Query: 372 PRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 431
++ + RQT VFSAT L+ L K Q +
Sbjct: 390 EDDEIVPT---------------------RQTLVFSATFHKGLQQKLAGKGKQG----LM 424
Query: 432 KGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489
S++ L LN + PK VD+ + + L E + C EKD YLY +L HP
Sbjct: 425 DDSESMEYLLKKLNFREDKPKFVDVNPISQMAEGLKEGMVECAGTEKDLYLYSLLLYHPN 484
Query: 490 -RTL 492
RTL
Sbjct: 485 QRTL 488
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 3/152 (1%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQL 563
PK VD+ + + L E + C EKD YLY +L HP RTL+F NSI SV+RLT L
Sbjct: 444 PKFVDVNPISQMAEGLKEGMVECAGTEKDLYLYSLLLYHPNQRTLIFTNSIHSVRRLTPL 503
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNNSILLATDVAARGLDIPGIEHVIHYHV 621
L L LH+ M Q+ R+++++RF +SIL+ATDVAARGLDI G++ VIHYH+
Sbjct: 504 LQGLNLQANALHSQMAQKARMRSIERFSSPKSTSSILVATDVAARGLDIGGVQLVIHYHL 563
Query: 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
PR +++Y+HRSGRTAR + G ++++ +E+
Sbjct: 564 PRAADMYVHRSGRTARGSASGTSILMCAPEEV 595
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGA 1413
ALIL+PTRELA Q+ HI K P VA V GG+S +KQ R L K I++ TPG
Sbjct: 279 ALILSPTRELAHQLTEHITALCKGLPSAPYVAAVTGGLSVQKQQRQLAKA-DIVIGTPGR 337
Query: 1414 L 1414
L
Sbjct: 338 L 338
Score = 48.9 bits (115), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF------NSL-----EKKVDLPDFPI 1286
D ++HRSGRTAR + G ++++ +E+ ++ N+L + K + I
Sbjct: 568 DMYVHRSGRTARGSASGTSILMCAPEEVVGMRRLVAKVHAQNALAGGGSKSKYYMRSLDI 627
Query: 1287 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
D V++ +K R+ LAK I + +K KK D W+ AA ++ + D E
Sbjct: 628 DRKVVARLKPRVTLAKRIADSTLAKEKKGHDDEWVRAAAAELGVDYDSEEF 678
>gi|326475209|gb|EGD99218.1| ATP-dependent RNA helicase MAK5 [Trichophyton tonsurans CBS 112818]
Length = 742
Score = 275 bits (704), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 184/519 (35%), Positives = 266/519 (51%), Gaps = 63/519 (12%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
+E+ V ++ W ++ + +L + F PT IQ +P +L+ +D++G A TGSGK
Sbjct: 159 DEEADVDVSAWDSLDLRPELQTSLSRLKFAQPTPIQKATIPE-ILSGRDVIGKAATGSGK 217
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879
TLAFG+PIL ++ + E + K + A
Sbjct: 218 TLAFGLPILQYLLKRQEK---------------------------RPSALSKSSDKSPIA 250
Query: 880 LILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
LIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPGR
Sbjct: 251 LILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVYKQQRQLAEA-DIVVGTPGR 309
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ-------- 988
LW+ + LT+L I +LV+DE DR++ GHF E+ +L + T TS
Sbjct: 310 LWDMVSSTPKILTKLRSIKFLVVDEADRLLSEGHFKEVGELLSALDKTRTSDEDVDEASE 369
Query: 989 ------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKI 1040
RQT VFSAT L+ L K+ S + S++ L L K P+
Sbjct: 370 EEEEPASRQTLVFSATFQKGLQQKLA-KRDHSFHNNLLDKKESMEYLLKKLRFKDEKPRF 428
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTM 1099
+D+ + L E I C EKD YLY +L +P RTLVF NSISSV+RLTQ L
Sbjct: 429 IDVNPVSQMADNLKEGIIECSAMEKDLYLYSVLLFYPKHRTLVFTNSISSVRRLTQFLQN 488
Query: 1100 LKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L L LH+SM Q+ RL+ ++RF + IL+ATDVAARGLD+ GI+ VIHYHVPR
Sbjct: 489 LNLPALSLHSSMAQKARLRAVERFSSPTADPSPILIATDVAARGLDMQGIDLVIHYHVPR 548
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF---------NSLEKKVDLPDFPI 1207
T++ YIHRSGRTARA+ G ++++ +E ++ S K V L +
Sbjct: 549 TADTYIHRSGRTARASASGKSILICAPEETAGVTRLVAKVHHTHKRKSSSKDVQLHSIHL 608
Query: 1208 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRSG 1245
D +++ ++ R +L+K I E +K K + +WL +
Sbjct: 609 DRGIVTRLRPRANLSKKITESTLAKEKISSETDWLRSAA 647
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 175/517 (33%), Positives = 250/517 (48%), Gaps = 105/517 (20%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
+E+ V ++ W ++ + +L + F PT IQ +P +L+ +D++G A TGSGK
Sbjct: 159 DEEADVDVSAWDSLDLRPELQTSLSRLKFAQPTPIQKATIPE-ILSGRDVIGKAATGSGK 217
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262
TLAFG+PIL ++ + E + K + A
Sbjct: 218 TLAFGLPILQYLLKRQEK---------------------------RPSALSKSSDKSPIA 250
Query: 263 LILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
LIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPGR
Sbjct: 251 LILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVYKQQRQLAEA-DIVVGTPGR 309
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
LW+ + LT+L I +LV+DE DR++ GHF E+ +L + T TS
Sbjct: 310 LWDMVSSTPKILTKLRSIKFLVVDEADRLLSEGHFKEVGELLSALDKTRTSDEDVDEAS- 368
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
E RQT VFSAT L+ +K++K D S
Sbjct: 369 -------------EEEEEPASRQTLVFSATFQKGLQ------------QKLAKRDHSFH- 402
Query: 440 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499
+LL D+K+S Y L ++++
Sbjct: 403 -NNLL-----------------------------DKKESMEY----------LLKKLR-- 420
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVK 558
+ P+ +D+ + L E I C EKD YLY +L +P RTLVF NSISSV+
Sbjct: 421 FKDEKPRFIDVNPVSQMADNLKEGIIECSAMEKDLYLYSVLLFYPKHRTLVFTNSISSVR 480
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEH 615
RLTQ L L L LH+SM Q+ RL+ ++RF + IL+ATDVAARGLD+ GI+
Sbjct: 481 RLTQFLQNLNLPALSLHSSMAQKARLRAVERFSSPTADPSPILIATDVAARGLDMQGIDL 540
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
VIHYHVPRT++ YIHRSGRTARA+ G ++++ +E
Sbjct: 541 VIHYHVPRTADTYIHRSGRTARASASGKSILICAPEE 577
Score = 49.3 bits (116), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF---------NSLEKKVDLPDFPIDE 1288
D ++HRSGRTARA+ G ++++ +E ++ S K V L +D
Sbjct: 551 DTYIHRSGRTARASASGKSILICAPEETAGVTRLVAKVHHTHKRKSSSKDVQLHSIHLDR 610
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+++ ++ R +L+K I E +K K + +WL AA+D+ + D E +
Sbjct: 611 GIVTRLRPRANLSKKITESTLAKEKISSETDWLRSAAEDLGVDYDSEEFAE 661
Score = 47.0 bits (110), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPG
Sbjct: 250 ALILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVYKQQRQLAEA-DIVVGTPG 308
Query: 1413 AL 1414
L
Sbjct: 309 RL 310
>gi|238882283|gb|EEQ45921.1| hypothetical protein CAWG_04261 [Candida albicans WO-1]
Length = 768
Score = 275 bits (704), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 182/515 (35%), Positives = 280/515 (54%), Gaps = 59/515 (11%)
Query: 761 EDMFVQMAEWVKFNIPETI----IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
+D + + W + ++ +I + L Q FK PT IQ +P AL + KD++G A TG
Sbjct: 172 DDNEINLPNWQEGDLGSSISAYTLYGLSQLDFKKPTPIQKETIPIAL-SGKDVIGKATTG 230
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
SGKTLA+GIPIL + L N +++ D K N
Sbjct: 231 SGKTLAYGIPILEKYIQSL-NLIKQNNKD--------------------------KKINH 263
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVAT 933
+I APTRELA QV +H+ KY+P+ + + GG+S +KQ R+L P I+VAT
Sbjct: 264 PTGIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVAT 323
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-----DRVTMTETSQ 988
PGR+ E +Q L + +V+DE DR+++ GHF E + IL +R
Sbjct: 324 PGRMLELVQGDSELAKRLASTDIIVLDEADRLLQDGHFDEFEKILELFGKNRPKSKSIEW 383
Query: 989 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEK 1046
QT VFSAT + L L+ + + KS + D ++ L + L K P +VD K
Sbjct: 384 KWQTLVFSATFSRDLFRKLD-RHQKGKSSSLMGNDEIVQLLNEKLKFKDKKPTLVDANPK 442
Query: 1047 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 1106
++ +TE+ + C E+D YLYYF+L + G TLVF NSI SVKRL LL L
Sbjct: 443 EIVSGQITEALVECGPTERDLYLYYFLLMYKGSTLVFTNSIDSVKRLVPLLNNLNIPAFS 502
Query: 1107 LHASMNQRQRLKNLDRFRD--QNN--SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162
+H+SM Q+QRL+ L++F++ Q N ++L+A+DVAARGLDIP I+HV+HYH+PR++++YI
Sbjct: 503 IHSSMIQKQRLRALEKFKEASQKNEVAVLVASDVAARGLDIPNIDHVVHYHLPRSADVYI 562
Query: 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-------EKKVDLPD----FPIDESV 1211
HRSGRTARA EG++++ E ++ L E ++++ + PI+ +
Sbjct: 563 HRSGRTARAGKEGVSVMFCSPQEASGPLRKLRRLVAGNSNKESRLNMHNDVKLLPIEMDL 622
Query: 1212 LSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHRSG 1245
+S IK R++++ + S + D+W+ ++
Sbjct: 623 VSQIKSRVEISSKLADASISSTATRKEDSWVKQAA 657
Score = 146 bits (369), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/188 (46%), Positives = 123/188 (65%), Gaps = 12/188 (6%)
Query: 494 EEIQDLLN------IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547
+EI LLN K P +VD K ++ +TE+ + C E+D YLYYF+L + G T
Sbjct: 417 DEIVQLLNEKLKFKDKKPTLVDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGST 476
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNN--SILLATDV 603
LVF NSI SVKRL LL L +H+SM Q+QRL+ L++F++ Q N ++L+A+DV
Sbjct: 477 LVFTNSIDSVKRLVPLLNNLNIPAFSIHSSMIQKQRLRALEKFKEASQKNEVAVLVASDV 536
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI--PLKTKFNL 661
AARGLDIP I+HV+HYH+PR++++YIHRSGRTARA EG++V+ E PL+ L
Sbjct: 537 AARGLDIPNIDHVVHYHLPRSADVYIHRSGRTARAGKEGVSVMFCSPQEASGPLRKLRRL 596
Query: 662 QEEENNEE 669
+N+E
Sbjct: 597 VAGNSNKE 604
Score = 145 bits (366), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/399 (31%), Positives = 190/399 (47%), Gaps = 67/399 (16%)
Query: 109 QSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSN-----NEDMFVQMAEWVKFNIPETI- 162
Q D +S+++ K + S N EL V +N +D + + W + ++ +I
Sbjct: 133 QEDANTSERVSNNDKDDKLAES-NDELNAVSFANLDLPLPDDNEINLPNWQEGDLGSSIS 191
Query: 163 ---IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+ L Q FK PT IQ +P AL + KD++G A TGSGKTLA+GIPIL + L
Sbjct: 192 AYTLYGLSQLDFKKPTPIQKETIPIAL-SGKDVIGKATTGSGKTLAYGIPILEKYIQSL- 249
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N +++ D K N +I APTRELA QV +H+
Sbjct: 250 NLIKQNNKD--------------------------KKINHPTGIIFAPTRELAHQVVDHL 283
Query: 280 LDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
KY+P+ + + GG+S +KQ R+L P I+VATPGR+ E +Q L
Sbjct: 284 NKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPGRMLELVQGDSELAKRLAS 343
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396
+ +V+DE DR+++ GHF E + IL+ + ++P+ IE
Sbjct: 344 TDIIVLDEADRLLQDGHFDEFEKILE---LFGKNRPKSKSIE------------------ 382
Query: 397 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDL 454
QT VFSAT + L L+ + + KS + D ++ L + L K P +VD
Sbjct: 383 --WKWQTLVFSATFSRDLFRKLD-RHQKGKSSSLMGNDEIVQLLNEKLKFKDKKPTLVDA 439
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
K ++ +TE+ + C E+D YLYYF+L + G TL
Sbjct: 440 NPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGSTLV 478
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPG 1412
+I APTRELA QV +H+ KY+P+ + + GG+S +KQ R+L P I+VATPG
Sbjct: 266 GIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPG 325
Query: 1413 AL 1414
+
Sbjct: 326 RM 327
>gi|224107545|ref|XP_002314517.1| predicted protein [Populus trichocarpa]
gi|222863557|gb|EEF00688.1| predicted protein [Populus trichocarpa]
Length = 847
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 191/538 (35%), Positives = 283/538 (52%), Gaps = 59/538 (10%)
Query: 127 TYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL 186
T S NK+ +E ++ + + + W + + +++++Y+ GFK PT IQ +P+A
Sbjct: 142 TSVSNNKDDVEGESVDETEFY----GWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA 197
Query: 187 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246
KD+VGAAETGSGKTLAFG+PIL ++ + + + +N + EEAE
Sbjct: 198 HQGKDVVGAAETGSGKTLAFGLPILQRLLEEQDKASNMGDN---VGEEAER--------- 245
Query: 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306
F K L ALI+ PTRELAIQV +H +A ++V +VGGMSTEKQ R+L
Sbjct: 246 -----FAPK--GLLRALIITPTRELAIQVTDHFKEAAHGINIRVVSIVGGMSTEKQERLL 298
Query: 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 366
P I+V TPGRLWE + G HL EL+ +++ V+DE DRMIE+GHF EL++I+D + M
Sbjct: 299 KARPEIIVGTPGRLWELMSGGEKHLVELHSLSFFVLDEADRMIENGHFRELQSIIDMLPM 358
Query: 367 TETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 426
S Q+ S + L N+ + RQTFVFSAT+ S LK+G K
Sbjct: 359 ASGSIGGQSQ-SSENCQTLSNM--------QIKKRQTFVFSATIALSADFRKKLKRGSLK 409
Query: 427 SKK-VSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484
SK+ ++ G SI+ L + +++ I+D LT + IL E+ Y
Sbjct: 410 SKQSMADGLNSIEMLSERAGMRANAAIID----------LTNASILANKLEESFIEYVSY 459
Query: 485 LQHPGRTL----CEEIQDL-LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY-LYY 538
P R C+ + L +P + L S C S+ +
Sbjct: 460 TASPIRIFITAKCKNLSGLQATCFAPHFCPFAHPR--HQCLDTS---CSDAAASSFEVNP 514
Query: 539 FILQHPGRTLVFCN--SISSVKRLTQLLTMLKCSP--LPLHASMNQRQRLKNLDRFRDQN 594
F G LV + S S + + ML S + + ++Q + +DRFR
Sbjct: 515 FNRPCIGFELVMLSGQSDSGDNQFIRQNHMLPFSSREFFIFLCLWEKQMAEAIDRFRSNE 574
Query: 595 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
++IL+ATDVAARGLDIPG+ V+HY +P ++E+Y+HRSGRTARA +G ++ LI S++
Sbjct: 575 HAILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARACTDGCSIALISSND 632
Score = 241 bits (614), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 183/623 (29%), Positives = 307/623 (49%), Gaps = 92/623 (14%)
Query: 744 TYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL 803
T S NK+ +E ++ + + + W + + +++++Y+ GFK PT IQ +P+A
Sbjct: 142 TSVSNNKDDVEGESVDETEFY----GWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA 197
Query: 804 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863
KD+VGAAETGSGKTLAFG+PIL ++ + + + +N + EEAE
Sbjct: 198 HQGKDVVGAAETGSGKTLAFGLPILQRLLEEQDKASNMGDN---VGEEAER--------- 245
Query: 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923
F K L ALI+ PTRELAIQV +H +A ++V +VGGMSTEKQ R+L
Sbjct: 246 -----FAPK--GLLRALIITPTRELAIQVTDHFKEAAHGINIRVVSIVGGMSTEKQERLL 298
Query: 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
P I+V TPGRLWE + G HL EL+ +++ V+DE DRMIE+GHF EL++I+D + M
Sbjct: 299 KARPEIIVGTPGRLWELMSGGEKHLVELHSLSFFVLDEADRMIENGHFRELQSIIDMLPM 358
Query: 984 TETS-------------------QPRQTFVFSATLTHSLKNSLNLKKGQSKSKK-VSKGD 1023
S + RQTFVFSAT+ S LK+G KSK+ ++ G
Sbjct: 359 ASGSIGGQSQSSENCQTLSNMQIKKRQTFVFSATIALSADFRKKLKRGSLKSKQSMADGL 418
Query: 1024 PSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082
SI+ L + +++ I+DLT + L ES I Y+ Y P R +
Sbjct: 419 NSIEMLSERAGMRANAAIIDLTNASILANKLEESFI--------EYVSY--TASPIRIFI 468
Query: 1083 F--CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
C ++S L+ + H R + LD +D AA
Sbjct: 469 TAKCKNLSG----------LQATCFAPHFCPFAHPRHQCLD---------TSCSDAAASS 509
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT---LVLIESDEIPLYIKMFN-SL 1196
+ V ++ P + SG++ +N+ + ++ S E +++ ++ +
Sbjct: 510 FE------VNPFNRPCIGFELVMLSGQSDSGDNQFIRQNHMLPFSSREFFIFLCLWEKQM 563
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN---WLHRSGRTARANNE 1253
+ +D F +E + + I + + + P + ++HRSGRTARA +
Sbjct: 564 AEAID--RFRSNEHAILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARACTD 621
Query: 1254 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK 1313
G ++ LI S++ + + S K+ FP++ES + + +R+ LA+ I+ + K +
Sbjct: 622 GCSIALISSNDTSKFASLCKSFSKE-SFQRFPLEESYMQEVMRRLSLARQIDKITRKDSQ 680
Query: 1314 NRP-DNWLEKAAKDMDIIIDDEN 1335
+ W E+ A+ +++++++++
Sbjct: 681 EKAKKTWFERNAESIELMVENDD 703
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 132/382 (34%), Positives = 191/382 (50%), Gaps = 79/382 (20%)
Query: 90 ELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQ 149
++ + V++TE
Sbjct: 150 DVEGES------VDETE------------------------------------------- 160
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
W + + +++++Y+ GFK PT IQ +P+A KD+VGAAETGSGKTLAFG+P
Sbjct: 161 FYGWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLP 220
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL ++ + + + +N + EEAE F K L ALI+ PTR
Sbjct: 221 ILQRLLEEQDKASNMGDN---VGEEAE--------------RFAPK--GLLRALIITPTR 261
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELAIQV +H +A ++V +VGGMSTEKQ R+L P I+V TPGRLWE + G
Sbjct: 262 ELAIQVTDHFKEAAHGINIRVVSIVGGMSTEKQERLLKARPEIIVGTPGRLWELMSGGEK 321
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
HL EL+ +++ V+DE DRMIE+GHF EL++I+D + M S Q+ S + L N+
Sbjct: 322 HLVELHSLSFFVLDEADRMIENGHFRELQSIIDMLPMASGSIGGQSQ-SSENCQTLSNM- 379
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK-VSKGDPSIKRLQDLLNIKS 448
+ RQTFVFSAT+ S LK+G KSK+ ++ G SI+ L + +++
Sbjct: 380 -------QIKKRQTFVFSATIALSADFRKKLKRGSLKSKQSMADGLNSIEMLSERAGMRA 432
Query: 449 -PKIVDLTEKIGITKTLTESKI 469
I+DLT + L ES I
Sbjct: 433 NAAIIDLTNASILANKLEESFI 454
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 41/59 (69%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELAIQV +H +A ++V +VGGMSTEKQ R+L P I+V TPG L
Sbjct: 254 ALIITPTRELAIQVTDHFKEAAHGINIRVVSIVGGMSTEKQERLLKARPEIIVGTPGRL 312
>gi|367029791|ref|XP_003664179.1| hypothetical protein MYCTH_2306707 [Myceliophthora thermophila ATCC
42464]
gi|347011449|gb|AEO58934.1| hypothetical protein MYCTH_2306707 [Myceliophthora thermophila ATCC
42464]
Length = 785
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 198/544 (36%), Positives = 278/544 (51%), Gaps = 102/544 (18%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
ED + M+EWV + ++ A+ + F PT IQ+ +P ++ D++G A TGSGKT
Sbjct: 194 EDNDLDMSEWVPLGLSPQVLSAIARLKFAKPTAIQAKAIPH-IMNGHDLIGKAATGSGKT 252
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFGIPI+ +S L AE A TT+ + + AL
Sbjct: 253 LAFGIPIV----------------ESWLARRAE----------AQTTD-----KKQPIAL 281
Query: 881 ILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
IL+PTRELA Q+++H+ L AG T V V GG++ +KQ R K ILV TPGR+W
Sbjct: 282 ILSPTRELAHQIRDHLKELCAGLTTGPYVCSVTGGLAVQKQQRQFEKA-DILVGTPGRMW 340
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPE---LKNILDRVTMTE---------- 985
E + L L I++LV+DE DR+++ GHF E + N LDR E
Sbjct: 341 ELASSSNSVLGALRGISFLVVDEADRLLKDGHFKEAEEIMNALDRKAPGEEVVEDEGDSD 400
Query: 986 ---TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKRLQDLLNIKSP--K 1039
RQT VFSAT +L+ L K++ GD S++ L LN + P K
Sbjct: 401 DETPRHNRQTLVFSATFNKNLQQKL-----AGKARYNLMGDAESLEYLLKKLNFREPRPK 455
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLT 1098
VD + + L E I C EKD +LY +L P R LVF NSI++V+RLT L
Sbjct: 456 FVDTNPVSQMAENLREGLIQCGDLEKDLFLYAVLLLQPTRRALVFTNSINTVRRLTPFLQ 515
Query: 1099 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNS------------------ILLATDVAARG 1140
L LH+ M Q+ RL++++RFR N+ IL+ATDVAARG
Sbjct: 516 ALNLPAFALHSDMEQKARLRSIERFRAGANAANNKKNNPAPSSSPPASSILVATDVAARG 575
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE-IPL----------- 1188
LDIP I+ VIHYHVPRT++ Y+HRSGRTARAN+ G++++L E +P
Sbjct: 576 LDIPEIDLVIHYHVPRTADDYVHRSGRTARANHSGISILLCGPKEAVPTRRLIAKVHAAA 635
Query: 1189 -----YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP---DNW 1240
K+ +S V D ID +++ ++ R+ LAK I E+ I K R ++W
Sbjct: 636 AAHMPRAKLASSAGVGVQTVD--IDRRLVAHLRPRVTLAKKI--TETTIAKERGAKEEDW 691
Query: 1241 LHRS 1244
L ++
Sbjct: 692 LRKA 695
Score = 229 bits (584), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 173/528 (32%), Positives = 249/528 (47%), Gaps = 130/528 (24%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
ED + M+EWV + ++ A+ + F PT IQ+ +P ++ D++G A TGSGKT
Sbjct: 194 EDNDLDMSEWVPLGLSPQVLSAIARLKFAKPTAIQAKAIPH-IMNGHDLIGKAATGSGKT 252
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFGIPI+ +S L AE A TT+ + + AL
Sbjct: 253 LAFGIPIV----------------ESWLARRAE----------AQTTD-----KKQPIAL 281
Query: 264 ILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
IL+PTRELA Q+++H+ L AG T V V GG++ +KQ R K ILV TPGR+W
Sbjct: 282 ILSPTRELAHQIRDHLKELCAGLTTGPYVCSVTGGLAVQKQQRQFEKA-DILVGTPGRMW 340
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
E + L L I++LV+DE DR+++ GHF E + I++ + + P + ++E
Sbjct: 341 ELASSSNSVLGALRGISFLVVDEADRLLKDGHFKEAEEIMNAL---DRKAPGEEVVED-- 395
Query: 382 FPELKNILDRVTMTETSQP-RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKR 439
+ + ET + RQT VFSAT +L+ L K++ GD S++
Sbjct: 396 --------EGDSDDETPRHNRQTLVFSATFNKNLQQKL-----AGKARYNLMGDAESLEY 442
Query: 440 LQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497
L LN + PK VD + + L E I C EKD +LY +L P R
Sbjct: 443 LLKKLNFREPRPKFVDTNPVSQMAENLREGLIQCGDLEKDLFLYAVLLLQPTR------- 495
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
+ + T I + LT
Sbjct: 496 --------RALVFTNSINTVRRLT------------------------------------ 511
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR------------------DQNNSILL 599
L L LH+ M Q+ RL++++RFR +SIL+
Sbjct: 512 ----PFLQALNLPAFALHSDMEQKARLRSIERFRAGANAANNKKNNPAPSSSPPASSILV 567
Query: 600 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
ATDVAARGLDIP I+ VIHYHVPRT++ Y+HRSGRTARAN+ G++++L
Sbjct: 568 ATDVAARGLDIPEIDLVIHYHVPRTADDYVHRSGRTARANHSGISILL 615
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
ALIL+PTRELA Q+++H+ L AG T V V GG++ +KQ R K ILV TPG
Sbjct: 280 ALILSPTRELAHQIRDHLKELCAGLTTGPYVCSVTGGLAVQKQQRQFEKA-DILVGTPGR 338
Query: 1414 L 1414
+
Sbjct: 339 M 339
Score = 47.8 bits (112), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 24/119 (20%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDE-IPL----------------YIKMFNSLEKKVD 1280
D+++HRSGRTARAN+ G++++L E +P K+ +S V
Sbjct: 594 DDYVHRSGRTARANHSGISILLCGPKEAVPTRRLIAKVHAAAAAHMPRAKLASSAGVGVQ 653
Query: 1281 LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP---DNWLEKAAKDMDIIIDDENL 1336
D ID +++ ++ R+ LAK I E+ I K R ++WL KAA ++ + D + L
Sbjct: 654 TVD--IDRRLVAHLRPRVTLAKKI--TETTIAKERGAKEEDWLRKAADELGVEYDPDEL 708
>gi|340938992|gb|EGS19614.1| hypothetical protein CTHT_0040930 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 767
Score = 275 bits (702), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/524 (33%), Positives = 273/524 (52%), Gaps = 80/524 (15%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V ++EWV + ++ + + F PT IQ+ +P + D++G A TGSGKTLAFG
Sbjct: 194 VDLSEWVPLGLSPPVLSCIARLKFLKPTPIQARAIPEVINGH-DVIGKAATGSGKTLAFG 252
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPI+ ++K+ + ES+ + ALIL+P
Sbjct: 253 IPIVEAWLSKIASA-----------------------ESSGQKHPI--------ALILSP 281
Query: 885 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942
TRELA Q+ +H+ L AG T + V GG++ +KQ R L K I+V TPGRLWE +
Sbjct: 282 TRELAHQITDHLKQLCAGLATAPYICSVTGGLAVQKQERQLQKA-DIVVGTPGRLWEVMS 340
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVT-----------MTETSQ 988
+ + I++LV+DE DR+++ GHF E + I LDR + +
Sbjct: 341 TSNAVMQSFRSISFLVVDEADRILKDGHFKEAEKILLALDRTVPGEEEENDSDDEKTSRR 400
Query: 989 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKI 1047
RQT VFSAT +L+ L G+++ + + + S++ L LN + PK +D
Sbjct: 401 RRQTLVFSATFNKALQQKL---AGKARYNLMGETE-SLEYLLKRLNFREHPKFIDTNPIT 456
Query: 1048 GITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLP 1106
+ + L E I C EKD YLY +L P R LVF NSI++V+RLT L L
Sbjct: 457 QMAENLKEGLIQCGDMEKDLYLYAVLLLQPTRRALVFTNSINTVRRLTAFLNNLNLPVFA 516
Query: 1107 LHASMNQRQRLKNLDRFRDQNN----------SILLATDVAARGLDIPGIEHVIHYHVPR 1156
LH+ M Q+ RL++++RF+ N+ SIL+ATDVAARGLDIP I+ V+HYHVPR
Sbjct: 517 LHSEMEQKARLRSIERFKADNHPNKSKSNNAASILVATDVAARGLDIPLIDLVVHYHVPR 576
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE--------------KKVDL 1202
+++ Y+HRSGRTARA+N G++++L E ++ N + K + +
Sbjct: 577 SADDYVHRSGRTARASNSGVSILLCGPKEAIPTQRLINKVHAAAAAKNSNPVKSTKALGV 636
Query: 1203 PDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRSG 1245
ID ++ ++ R+ L++ I E +K + + D WL ++
Sbjct: 637 QTIDIDRRLVQCLRPRVTLSQKITEATMAKERGAKEDEWLRKAA 680
Score = 227 bits (578), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 165/527 (31%), Positives = 247/527 (46%), Gaps = 120/527 (22%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V ++EWV + ++ + + F PT IQ+ +P + D++G A TGSGKTLAFG
Sbjct: 194 VDLSEWVPLGLSPPVLSCIARLKFLKPTPIQARAIPEVINGH-DVIGKAATGSGKTLAFG 252
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IPI+ ++K+ + ES+ + ALIL+P
Sbjct: 253 IPIVEAWLSKIASA-----------------------ESSGQKHPI--------ALILSP 281
Query: 268 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 325
TRELA Q+ +H+ L AG T + V GG++ +KQ R L K I+V TPGRLWE +
Sbjct: 282 TRELAHQITDHLKQLCAGLATAPYICSVTGGLAVQKQERQLQKA-DIVVGTPGRLWEVMS 340
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385
+ + I++LV+DE DR+++ GHF E + IL + T P
Sbjct: 341 TSNAVMQSFRSISFLVVDEADRILKDGHFKEAEKILLALDRT--------------VPGE 386
Query: 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 445
+ D + + RQT VFSAT +L+ L G+++ + + + S++ L LN
Sbjct: 387 EEENDSDDEKTSRRRRQTLVFSATFNKALQQKL---AGKARYNLMGETE-SLEYLLKRLN 442
Query: 446 IKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
+ PK +D + + L E I C EKD YLY +L P R
Sbjct: 443 FREHPKFIDTNPITQMAENLKEGLIQCGDMEKDLYLYAVLLLQPTR-------------- 488
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
+ + T I + LT F N+
Sbjct: 489 -RALVFTNSINTVRRLT---------------------------AFLNN----------- 509
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNN----------SILLATDVAARGLDIPGIE 614
L LH+ M Q+ RL++++RF+ N+ SIL+ATDVAARGLDIP I+
Sbjct: 510 --LNLPVFALHSEMEQKARLRSIERFKADNHPNKSKSNNAASILVATDVAARGLDIPLID 567
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE-IPLKTKFN 660
V+HYHVPR+++ Y+HRSGRTARA+N G++++L E IP + N
Sbjct: 568 LVVHYHVPRSADDYVHRSGRTARASNSGVSILLCGPKEAIPTQRLIN 614
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
ALIL+PTRELA Q+ +H+ L AG T + V GG++ +KQ R L K I+V TPG
Sbjct: 276 ALILSPTRELAHQITDHLKQLCAGLATAPYICSVTGGLAVQKQERQLQKA-DIVVGTPGR 334
Query: 1414 L 1414
L
Sbjct: 335 L 335
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 15/107 (14%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE--------------KKVDLPD 1283
D+++HRSGRTARA+N G++++L E ++ N + K + +
Sbjct: 579 DDYVHRSGRTARASNSGVSILLCGPKEAIPTQRLINKVHAAAAAKNSNPVKSTKALGVQT 638
Query: 1284 FPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDI 1329
ID ++ ++ R+ L++ I E +K + + D WL KAA+++ +
Sbjct: 639 IDIDRRLVQCLRPRVTLSQKITEATMAKERGAKEDEWLRKAAEELGV 685
>gi|403218070|emb|CCK72562.1| hypothetical protein KNAG_0K01980 [Kazachstania naganishii CBS 8797]
Length = 721
Score = 274 bits (700), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 179/529 (33%), Positives = 274/529 (51%), Gaps = 81/529 (15%)
Query: 759 NNEDMFVQMAEWVKF-NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
N ++ V++ +W + T ++ L + G+ PT+IQS +P AL DI+G A TGS
Sbjct: 134 NFSEVEVELPDWQALGDFSMTTLQGLSKLGYTKPTEIQSKTIPLALEGH-DIMGKASTGS 192
Query: 818 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 877
GKTLA+GIPIL ++ K +
Sbjct: 193 GKTLAYGIPILENLIK-------------------------------------GKDSARP 215
Query: 878 YALILAPTRELAIQVQNHILDAGK--YTP---VKVACVVGGMSTEKQLRIL--NKCPHIL 930
ALI PTRELA QV +H+ + G+ +T + + GG+S +KQ R+L + I+
Sbjct: 216 VALIFTPTRELASQVTSHLTNLGESIFTGRNKFAIMSLTGGLSIQKQERVLKYDGSGQII 275
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
+ATPGR E ++ + +I LV+DE DR+++ GHF E IL ++ +
Sbjct: 276 IATPGRFLELLEKRSDLVARFAQIETLVLDEADRLLQDGHFDEFTKILKLLSQARREKEG 335
Query: 991 -----QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG--DPSIKRLQDLLNIKS-PKIVD 1042
QT +FSAT + L N L GQ + K S + +K+L ++ K P I+D
Sbjct: 336 KRSHWQTLIFSATFSLDLFNKL-ASNGQGHTLKESDNELEEVLKQLMTKIHFKERPTIID 394
Query: 1043 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 1102
+ + E+ I C E+D Y+YYFI PG TL+FCN+I SVK+LT L L+
Sbjct: 395 ANPFDKVNMQVKEALIECAPLERDLYVYYFISMFPGTTLIFCNAIDSVKKLTSFLNFLRI 454
Query: 1103 SPLPLHASMNQRQRLKNLDRF--RDQNN------SILLATDVAARGLDIPGIEHVIHYHV 1154
+H+SM+Q+ RL NL+++ + Q N ++L+A+DVAARGLDIPGI+HVIHYH+
Sbjct: 455 PSFQIHSSMSQKNRLSNLEKYEKKAQFNKTLHKPTVLIASDVAARGLDIPGIQHVIHYHL 514
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PL---------------YIKMFNSLE 1197
PRT+++YIHRSGRTAR +EG+++++ E PL K L+
Sbjct: 515 PRTADVYIHRSGRTARGQSEGVSVMICSPQEAMGPLRKLRKVLSSGSESQRRQKRGRGLK 574
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHRSG 1245
+ D+ PI+ ++ +K R LA + + S N+ +NWL ++
Sbjct: 575 WQKDVSLLPIEVDIVRQLKGRSQLAAELANHDVSSTSLNKDENWLKKAA 623
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 168/536 (31%), Positives = 251/536 (46%), Gaps = 139/536 (25%)
Query: 142 NNEDMFVQMAEWVKF-NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
N ++ V++ +W + T ++ L + G+ PT+IQS +P AL DI+G A TGS
Sbjct: 134 NFSEVEVELPDWQALGDFSMTTLQGLSKLGYTKPTEIQSKTIPLALEGH-DIMGKASTGS 192
Query: 201 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 260
GKTLA+GIPIL ++ K +
Sbjct: 193 GKTLAYGIPILENLIK-------------------------------------GKDSARP 215
Query: 261 YALILAPTRELAIQVQNHILDAGK--YTP---VKVACVVGGMSTEKQLRIL--NKCPHIL 313
ALI PTRELA QV +H+ + G+ +T + + GG+S +KQ R+L + I+
Sbjct: 216 VALIFTPTRELASQVTSHLTNLGESIFTGRNKFAIMSLTGGLSIQKQERVLKYDGSGQII 275
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
+ATPGR E ++ + +I LV+DE DR+++ GHF E IL ++ R
Sbjct: 276 IATPGRFLELLEKRSDLVARFAQIETLVLDEADRLLQDGHFDEFTKILKLLSQAR----R 331
Query: 374 QTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
+ + H+ QT +FSAT + L N L GQ + K S
Sbjct: 332 EKEGKRSHW-------------------QTLIFSATFSLDLFNKL-ASNGQGHTLKESDN 371
Query: 434 --DPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
+ +K+L ++ K P I+D + + E+ I C E+D Y+YYFI PG
Sbjct: 372 ELEEVLKQLMTKIHFKERPTIIDANPFDKVNMQVKEALIECAPLERDLYVYYFISMFPGT 431
Query: 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550
TL I C
Sbjct: 432 TL--------------------------------IFC----------------------- 436
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF--RDQNN------SILLATD 602
N+I SVK+LT L L+ +H+SM+Q+ RL NL+++ + Q N ++L+A+D
Sbjct: 437 -NAIDSVKKLTSFLNFLRIPSFQIHSSMSQKNRLSNLEKYEKKAQFNKTLHKPTVLIASD 495
Query: 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI--PLK 656
VAARGLDIPGI+HVIHYH+PRT+++YIHRSGRTAR +EG++V++ E PL+
Sbjct: 496 VAARGLDIPGIQHVIHYHLPRTADVYIHRSGRTARGQSEGVSVMICSPQEAMGPLR 551
Score = 49.3 bits (116), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGK--YTP---VKVACVVGGMSTEKQLRIL--NKCPHILV 1408
ALI PTRELA QV +H+ + G+ +T + + GG+S +KQ R+L + I++
Sbjct: 217 ALIFTPTRELASQVTSHLTNLGESIFTGRNKFAIMSLTGGLSIQKQERVLKYDGSGQIII 276
Query: 1409 ATPG---ALSLKRIDLAKSIEYLESKI 1432
ATPG L KR DL +E+ +
Sbjct: 277 ATPGRFLELLEKRSDLVARFAQIETLV 303
Score = 48.1 bits (113), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PL---------------YIKMFNSLEKKVD 1280
D ++HRSGRTAR +EG+++++ E PL K L+ + D
Sbjct: 519 DVYIHRSGRTARGQSEGVSVMICSPQEAMGPLRKLRKVLSSGSESQRRQKRGRGLKWQKD 578
Query: 1281 LPDFPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDEN 1335
+ PI+ ++ +K R LA + + S N+ +NWL+KAA D+ I +D ++
Sbjct: 579 VSLLPIEVDIVRQLKGRSQLAAELANHDVSSTSLNKDENWLKKAADDLGIDVDSDD 634
>gi|326479695|gb|EGE03705.1| ATP-dependent RNA helicase MAK5 [Trichophyton equinum CBS 127.97]
Length = 742
Score = 274 bits (700), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 184/519 (35%), Positives = 265/519 (51%), Gaps = 63/519 (12%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
+E+ V ++ W ++ + +L + F PT IQ +P +L+ +D++G A TGSGK
Sbjct: 159 DEEADVDVSAWDSLDLRPELQTSLSRLKFAQPTPIQKATIPE-ILSGRDVIGKAATGSGK 217
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879
TLAFG+PIL ++ + E + K + A
Sbjct: 218 TLAFGLPILQYLLKRQEK---------------------------RPSALSKSSDKSPIA 250
Query: 880 LILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
LIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPGR
Sbjct: 251 LILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVYKQQRQLAEA-DIVVGTPGR 309
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ-------- 988
LW+ + LT+L I +LV+DE DR++ GHF E+ +L + T TS
Sbjct: 310 LWDMVSSTPKILTKLRSIKFLVVDEADRLLSEGHFKEVGELLSALDKTRTSDEDVDEASE 369
Query: 989 ------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKI 1040
RQT VFSAT L+ L K+ S + S++ L L K P+
Sbjct: 370 EEEEPASRQTLVFSATFQKGLQQKLA-KRDHSFHNNLLDKKESMEYLLKKLRFKDEKPRF 428
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTM 1099
+D+ + L E I C EKD YLY +L +P RTLVF NSISSV+RLTQ L
Sbjct: 429 IDVNPVSQMADNLKEGIIECSAMEKDLYLYSVLLFYPKHRTLVFTNSISSVRRLTQFLQN 488
Query: 1100 LKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L L LH+SM Q+ RL+ ++RF + IL+ATDVAARGLD+ GI+ VIHYHVPR
Sbjct: 489 LNLPALSLHSSMAQKARLRAVERFSSPTADPSPILIATDVAARGLDMQGIDLVIHYHVPR 548
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF---------NSLEKKVDLPDFPI 1207
T++ YIHRSGRTARA+ G ++++ +E ++ S K V L +
Sbjct: 549 TADTYIHRSGRTARASASGKSILICAPEETAGVTRLVAKVHHTHKRKSSSKDVQLHSIHL 608
Query: 1208 DESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRSG 1245
D ++ ++ R +L+K I E +K K + +WL +
Sbjct: 609 DRGFVTRLRPRANLSKKITESTLAKEKISSETDWLRSAA 647
Score = 248 bits (634), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 175/517 (33%), Positives = 250/517 (48%), Gaps = 105/517 (20%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
+E+ V ++ W ++ + +L + F PT IQ +P +L+ +D++G A TGSGK
Sbjct: 159 DEEADVDVSAWDSLDLRPELQTSLSRLKFAQPTPIQKATIPE-ILSGRDVIGKAATGSGK 217
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262
TLAFG+PIL ++ + E + K + A
Sbjct: 218 TLAFGLPILQYLLKRQEK---------------------------RPSALSKSSDKSPIA 250
Query: 263 LILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
LIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPGR
Sbjct: 251 LILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVYKQQRQLAEA-DIVVGTPGR 309
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
LW+ + LT+L I +LV+DE DR++ GHF E+ +L + T TS
Sbjct: 310 LWDMVSSTPKILTKLRSIKFLVVDEADRLLSEGHFKEVGELLSALDKTRTSDEDVDEAS- 368
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
E RQT VFSAT L+ +K++K D S
Sbjct: 369 -------------EEEEEPASRQTLVFSATFQKGLQ------------QKLAKRDHSFH- 402
Query: 440 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499
+LL D+K+S Y L ++++
Sbjct: 403 -NNLL-----------------------------DKKESMEY----------LLKKLR-- 420
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVK 558
+ P+ +D+ + L E I C EKD YLY +L +P RTLVF NSISSV+
Sbjct: 421 FKDEKPRFIDVNPVSQMADNLKEGIIECSAMEKDLYLYSVLLFYPKHRTLVFTNSISSVR 480
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEH 615
RLTQ L L L LH+SM Q+ RL+ ++RF + IL+ATDVAARGLD+ GI+
Sbjct: 481 RLTQFLQNLNLPALSLHSSMAQKARLRAVERFSSPTADPSPILIATDVAARGLDMQGIDL 540
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
VIHYHVPRT++ YIHRSGRTARA+ G ++++ +E
Sbjct: 541 VIHYHVPRTADTYIHRSGRTARASASGKSILICAPEE 577
Score = 48.1 bits (113), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF---------NSLEKKVDLPDFPIDE 1288
D ++HRSGRTARA+ G ++++ +E ++ S K V L +D
Sbjct: 551 DTYIHRSGRTARASASGKSILICAPEETAGVTRLVAKVHHTHKRKSSSKDVQLHSIHLDR 610
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
++ ++ R +L+K I E +K K + +WL AA+D+ + D E +
Sbjct: 611 GFVTRLRPRANLSKKITESTLAKEKISSETDWLRSAAEDLGVDYDSEEFAE 661
Score = 47.0 bits (110), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ + P +A V GG+S KQ R L + I+V TPG
Sbjct: 250 ALILSPTRELAHQLVKHLKEVTSSAPNVDAYIASVTGGLSVYKQQRQLAEA-DIVVGTPG 308
Query: 1413 AL 1414
L
Sbjct: 309 RL 310
>gi|146412600|ref|XP_001482271.1| hypothetical protein PGUG_05291 [Meyerozyma guilliermondii ATCC 6260]
gi|152032567|sp|A5DPU0.1|MAK5_PICGU RecName: Full=ATP-dependent RNA helicase MAK5
gi|146393035|gb|EDK41193.1| hypothetical protein PGUG_05291 [Meyerozyma guilliermondii ATCC 6260]
Length = 754
Score = 273 bits (699), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 196/558 (35%), Positives = 293/558 (52%), Gaps = 72/558 (12%)
Query: 716 DDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNI 775
DD V +T+ SDEP K K++K K N + VD S +D + +W N+
Sbjct: 134 DDPVTETKR-PSDEPDLKSKKKQKPNKDDELRENA-FVGVDASLPKD--TDLPKWSMENV 189
Query: 776 PETI--IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+ I L GFK PT IQ +P AL KD++G A TGSGKTLA+GIPIL
Sbjct: 190 SLSTYTINGLAGCGFKEPTAIQRKAIPLALQG-KDVIGKATTGSGKTLAYGIPIL----- 243
Query: 834 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
E L +LE ++ T A+I APTRELA QV
Sbjct: 244 -------------------ERCLAQLESKT--------NTIKPPTAMIFAPTRELAHQVV 276
Query: 894 NHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950
+H+ K++P+ + + GG+S +KQ R+L+ P ILVATPGR E ++ +
Sbjct: 277 DHMNKIAKFSPLAQNGIVSITGGLSIQKQERLLSHGPSILVATPGRCLELMEKSVDLVNR 336
Query: 951 LYKINYLVIDETDRMIESGHFPELKNILDRVT------MTETSQPRQTFVFSATLTHSLK 1004
+ + +V+DE DR+++ GHF E + ILD + S+ QT VFSAT + L
Sbjct: 337 MALTDMIVLDEADRLLQDGHFEEFEKILDMLNKHRPKKTQGVSRRWQTLVFSATFSRDLF 396
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKH 1062
L+ K ++K + D + L L + +P ++D K ++ +TE+ + C
Sbjct: 397 GKLSNNKPRNKESSFIENDEILSLLNTKLQFRDRTPAVIDANPKEIVSGKVTEALVECGP 456
Query: 1063 DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 1122
E+D YLYYF+L +PG TLVF N+I SVKRL LT L +H+SM Q+QRL+ L+R
Sbjct: 457 SERDLYLYYFLLMYPGSTLVFANAIDSVKRLVPFLTNLNIPTFSIHSSMIQKQRLRALER 516
Query: 1123 FRDQN----NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
F+ ++L+A+DVAARGLDIP I+HV HYH+PR++++Y+HRSGRTARA EG+++
Sbjct: 517 FKAAGEKNQTAVLIASDVAARGLDIPNIDHVAHYHLPRSADVYVHRSGRTARAGKEGVSV 576
Query: 1179 VLIESDEIPLYIKMFNSLEKKV--------------DLPDFPIDESVLSLIKKRIDLAKS 1224
+ E F L K V D+ PI+ +++ +K R++++
Sbjct: 577 MFCSPQEAS---GPFRKLRKLVADSANKGSRMNMHSDVKLLPIEMDLVTQLKPRVNISSK 633
Query: 1225 IEYLE-SKIKKNRPDNWL 1241
+ S + + D+W+
Sbjct: 634 LANSTISTVSTKKSDSWM 651
Score = 149 bits (376), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 132/401 (32%), Positives = 194/401 (48%), Gaps = 66/401 (16%)
Query: 99 DDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNI 158
DD V +T+ SDEP K K++K K N + VD S +D + +W N+
Sbjct: 134 DDPVTETKR-PSDEPDLKSKKKQKPNKDDELRENA-FVGVDASLPKD--TDLPKWSMENV 189
Query: 159 PETI--IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+ I L GFK PT IQ +P AL KD++G A TGSGKTLA+GIPIL
Sbjct: 190 SLSTYTINGLAGCGFKEPTAIQRKAIPLALQG-KDVIGKATTGSGKTLAYGIPIL----- 243
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
E L +LE ++ T A+I APTRELA QV
Sbjct: 244 -------------------ERCLAQLESKT--------NTIKPPTAMIFAPTRELAHQVV 276
Query: 277 NHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333
+H+ K++P+ + + GG+S +KQ R+L+ P ILVATPGR E ++ +
Sbjct: 277 DHMNKIAKFSPLAQNGIVSITGGLSIQKQERLLSHGPSILVATPGRCLELMEKSVDLVNR 336
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
+ + +V+DE DR+++ GHF E + ILD M +P++T
Sbjct: 337 MALTDMIVLDEADRLLQDGHFEEFEKILD---MLNKHRPKKTQ----------------- 376
Query: 394 MTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI--KSPKI 451
S+ QT VFSAT + L L+ K ++K + D + L L ++P +
Sbjct: 377 --GVSRRWQTLVFSATFSRDLFGKLSNNKPRNKESSFIENDEILSLLNTKLQFRDRTPAV 434
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
+D K ++ +TE+ + C E+D YLYYF+L +PG TL
Sbjct: 435 IDANPKEIVSGKVTEALVECGPSERDLYLYYFLLMYPGSTL 475
Score = 149 bits (376), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 113/169 (66%), Gaps = 10/169 (5%)
Query: 494 EEIQDLLNIK------SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547
+EI LLN K +P ++D K ++ +TE+ + C E+D YLYYF+L +PG T
Sbjct: 415 DEILSLLNTKLQFRDRTPAVIDANPKEIVSGKVTEALVECGPSERDLYLYYFLLMYPGST 474
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN----NSILLATDV 603
LVF N+I SVKRL LT L +H+SM Q+QRL+ L+RF+ ++L+A+DV
Sbjct: 475 LVFANAIDSVKRLVPFLTNLNIPTFSIHSSMIQKQRLRALERFKAAGEKNQTAVLIASDV 534
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
AARGLDIP I+HV HYH+PR++++Y+HRSGRTARA EG++V+ E
Sbjct: 535 AARGLDIPNIDHVAHYHLPRSADVYVHRSGRTARAGKEGVSVMFCSPQE 583
Score = 61.2 bits (147), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPG 1412
A+I APTRELA QV +H+ K++P+ + + GG+S +KQ R+L+ P ILVATPG
Sbjct: 262 AMIFAPTRELAHQVVDHMNKIAKFSPLAQNGIVSITGGLSIQKQERLLSHGPSILVATPG 321
Score = 43.5 bits (101), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 18/112 (16%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV--------------DLPD 1283
D ++HRSGRTARA EG++++ E F L K V D+
Sbjct: 557 DVYVHRSGRTARAGKEGVSVMFCSPQEAS---GPFRKLRKLVADSANKGSRMNMHSDVKL 613
Query: 1284 FPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDE 1334
PI+ +++ +K R++++ + S + + D+W+++AA+++ + +++E
Sbjct: 614 LPIEMDLVTQLKPRVNISSKLANSTISTVSTKKSDSWMKEAAEELGVDMEEE 665
>gi|145244675|ref|XP_001394643.1| ATP-dependent RNA helicase mak5 [Aspergillus niger CBS 513.88]
gi|143345221|sp|A2QWW0.1|MAK5_ASPNC RecName: Full=ATP-dependent RNA helicase mak5
gi|134079333|emb|CAK96962.1| unnamed protein product [Aspergillus niger]
gi|350631401|gb|EHA19772.1| hypothetical protein ASPNIDRAFT_178721 [Aspergillus niger ATCC 1015]
Length = 766
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 186/508 (36%), Positives = 273/508 (53%), Gaps = 62/508 (12%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + I+ +L + F TPT +Q +P +L D++G A TGSGKTLAFGIPIL
Sbjct: 194 WESLGLSPEILTSLSKMKFTTPTLVQKSCIPQ-ILDGHDVIGKASTGSGKTLAFGIPIL- 251
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LE+ +++ EE+ +T ALI++PTRELA
Sbjct: 252 ---------------EHYLEKRRQDLRAGKEEKKKDTAPI---------ALIMSPTRELA 287
Query: 890 IQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
Q+ HI + + P ++A + GG+S +KQ R+L I++ TPGR+WE + G
Sbjct: 288 HQLAKHIGELALHAPGSNARIALLTGGLSVQKQQRVLAGA-DIVIGTPGRVWEVLSSGQG 346
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNIL---DRV-------------TMTETSQPR 990
+ ++ +I +LVIDE DR++ GHF E + IL DRV + R
Sbjct: 347 LIRKMSEIKFLVIDEADRLLSEGHFKEAEEILGALDRVEEGNFGGEESEDEEKEDARSER 406
Query: 991 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL-LNIKSPKIVDLTEKIGI 1049
QT VFSAT L+ L K + +S + LQ L + PK +D+ +
Sbjct: 407 QTLVFSATFHRDLQQKLAGKARWTGGDIMSNKESMEYLLQKLKFREEKPKFIDVNPVSQM 466
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
+ L E + C EKD YLY +L +P RTLVF NSIS+V+RLTQLL L L LH
Sbjct: 467 AEGLKEGIVECGAMEKDLYLYTLLLYNPKHRTLVFTNSISAVRRLTQLLQNLGLPALALH 526
Query: 1109 ASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
+SM Q+ RL++++RF + SIL+ATDVAARGLDI GI+ VIHYH PR ++ Y+HRS
Sbjct: 527 SSMAQKARLRSVERFSSPTSDPSSILVATDVAARGLDIKGIDFVIHYHAPRAADTYVHRS 586
Query: 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPIDESVLSLIKKRI 1219
GRTARA G ++++ +E+ +++ + KK+ L +D V+ +++R+
Sbjct: 587 GRTARAGASGKSVIICAPEEMVGVVRLAAKVHANMANGKKLPLESLELDRRVVLRVRQRV 646
Query: 1220 DLAKSIEYLESKIKKNR---PDNWLHRS 1244
DLA I +S I K + DNWL ++
Sbjct: 647 DLAAKI--TDSNIAKEKISAEDNWLQKA 672
Score = 246 bits (629), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 172/508 (33%), Positives = 253/508 (49%), Gaps = 101/508 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + I+ +L + F TPT +Q +P +L D++G A TGSGKTLAFGIPIL
Sbjct: 194 WESLGLSPEILTSLSKMKFTTPTLVQKSCIPQ-ILDGHDVIGKASTGSGKTLAFGIPIL- 251
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LE+ +++ EE+ +T ALI++PTRELA
Sbjct: 252 ---------------EHYLEKRRQDLRAGKEEKKKDTAPI---------ALIMSPTRELA 287
Query: 273 IQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
Q+ HI + + P ++A + GG+S +KQ R+L I++ TPGR+WE + G
Sbjct: 288 HQLAKHIGELALHAPGSNARIALLTGGLSVQKQQRVLAGA-DIVIGTPGRVWEVLSSGQG 346
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+ ++ +I +LVIDE DR++ GHF E + IL + +E G+F ++
Sbjct: 347 LIRKMSEIKFLVIDEADRLLSEGHFKEAEEILGALDR----------VEEGNFGGEESED 396
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
+ + RQT VFSAT
Sbjct: 397 EEKEDARSE--RQTLVFSATFHR------------------------------------- 417
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
DL +K+ T I+ K+S Y L ++++ + PK +D
Sbjct: 418 ---DLQQKLAGKARWTGGDIMSN---KESMEY----------LLQKLK--FREEKPKFID 459
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLK 568
+ + + L E + C EKD YLY +L +P RTLVF NSIS+V+RLTQLL L
Sbjct: 460 VNPVSQMAEGLKEGIVECGAMEKDLYLYTLLLYNPKHRTLVFTNSISAVRRLTQLLQNLG 519
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVIHYHVPRTS 625
L LH+SM Q+ RL++++RF + SIL+ATDVAARGLDI GI+ VIHYH PR +
Sbjct: 520 LPALALHSSMAQKARLRSVERFSSPTSDPSSILVATDVAARGLDIKGIDFVIHYHAPRAA 579
Query: 626 EIYIHRSGRTARANNEGLTVVLIESDEI 653
+ Y+HRSGRTARA G +V++ +E+
Sbjct: 580 DTYVHRSGRTARAGASGKSVIICAPEEM 607
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 1223 KSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------ 1276
K I+++ D ++HRSGRTARA G ++++ +E+ +++ +
Sbjct: 565 KGIDFVIHYHAPRAADTYVHRSGRTARAGASGKSVIICAPEEMVGVVRLAAKVHANMANG 624
Query: 1277 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWLEKAAKDMDIIIDD 1333
KK+ L +D V+ +++R+DLA I +S I K + DNWL+KAA+D+ + D
Sbjct: 625 KKLPLESLELDRRVVLRVRQRVDLAAKI--TDSNIAKEKISAEDNWLQKAAEDLGVEYDS 682
Query: 1334 ENL 1336
E
Sbjct: 683 EEF 685
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALI++PTRELA Q+ HI + + P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 277 ALIMSPTRELAHQLAKHIGELALHAPGSNARIALLTGGLSVQKQQRVLAGA-DIVIGTPG 335
>gi|452848186|gb|EME50118.1| hypothetical protein DOTSEDRAFT_165107 [Dothistroma septosporum
NZE10]
Length = 743
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 196/574 (34%), Positives = 286/574 (49%), Gaps = 95/574 (16%)
Query: 709 SANTNDPDDQVNKTEEIQSDEPHSK-----KLKQKKKKKQTYTSANKELLEVDTSN---- 759
AN + D ++ D P +K K KQ+ K K A+K E TS
Sbjct: 86 GANGEEKDSWSGFEDDAGDDAPLAKSVKVTKAKQESKSKTKSKPADKAGKETSTSGVFSG 145
Query: 760 ------NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
+E V ++ W + + +L + F PT +Q V+P L D+VG A
Sbjct: 146 LAEDAGDEAESVDVSAWRSLKLSPDTMASLSKLKFSKPTPVQQAVIPEVLNGH-DVVGKA 204
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
TGSGKT AFGIPIL E LE +S +K
Sbjct: 205 STGSGKTFAFGIPIL------------------------ERYLEAAARKS-------RKG 233
Query: 874 RNKL-YALILAPTRELAIQVQNHILDAGKYTPV-----KVACVVGGMSTEKQLRILNKCP 927
K ALIL+PTRELA Q+ +H+ ++ V +A + GG+S KQ R+L
Sbjct: 234 EGKAPLALILSPTRELAHQLDHHL--TALFSEVLSSKPSIATLTGGLSLLKQQRLLRDA- 290
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET- 986
+L+ TPGRLWE I G L +I +LV+DE DR++ G+F E+++IL+ + T+T
Sbjct: 291 DVLIGTPGRLWEIISSGQGIGAALKQIEFLVVDEADRLLSQGNFKEVEDILNTLDRTDTD 350
Query: 987 ------------SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG-DPSIKRLQDLL 1033
S RQT VFSAT L+N L G K K G +++ L L
Sbjct: 351 EDKKETNNSGPDSHSRQTLVFSATFDRGLQNKL---VGNFKYKDDLLGTKETLEYLLSKL 407
Query: 1034 NI--KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPGRTLVFCNSISSV 1090
N K PK +D+ + L E + C EKD YLY +L + R +VF NSI +V
Sbjct: 408 NFREKPPKFIDMNPTKQMATGLKEGMVECGGTEKDLYLYALLLLKQAKRAIVFANSIDAV 467
Query: 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGIE 1147
+R+T LL L+ + LPLH+ M Q+ RL++++RF+D +NS +++ATDVAARGLDIP ++
Sbjct: 468 RRITPLLQNLRLNALPLHSGMIQKARLRSVERFKDPSNSSPIVMVATDVAARGLDIPNVD 527
Query: 1148 HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD--- 1204
VIHYHVP+ ++ Y+HRSGRTARA EG ++++ +E+ ++ + K +
Sbjct: 528 LVIHYHVPKAADTYVHRSGRTARAGQEGASILVCGPEEVAAVRRLVAKVHAKSHIAKKDE 587
Query: 1205 -------------FPIDESVLSLIKKRIDLAKSI 1225
ID V+S +K+R+ LAK +
Sbjct: 588 TSEAAKQGYYIRTLDIDRRVVSRLKERVTLAKQL 621
Score = 146 bits (368), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 128/410 (31%), Positives = 182/410 (44%), Gaps = 77/410 (18%)
Query: 92 SANTNDPDDQVNKTEEIQSDEPSSK-----KLKQKKKKKQTYTSANKELLEVDTSN---- 142
AN + D ++ D P +K K KQ+ K K A+K E TS
Sbjct: 86 GANGEEKDSWSGFEDDAGDDAPLAKSVKVTKAKQESKSKTKSKPADKAGKETSTSGVFSG 145
Query: 143 ------NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
+E V ++ W + + +L + F PT +Q V+P L D+VG A
Sbjct: 146 LAEDAGDEAESVDVSAWRSLKLSPDTMASLSKLKFSKPTPVQQAVIPEVLNGH-DVVGKA 204
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
TGSGKT AFGIPIL E LE +S +K
Sbjct: 205 STGSGKTFAFGIPIL------------------------ERYLEAAARKS-------RKG 233
Query: 257 RNKL-YALILAPTRELAIQVQNHILDAGKYTPV-----KVACVVGGMSTEKQLRILNKCP 310
K ALIL+PTRELA Q+ +H+ ++ V +A + GG+S KQ R+L
Sbjct: 234 EGKAPLALILSPTRELAHQLDHHL--TALFSEVLSSKPSIATLTGGLSLLKQQRLLRDA- 290
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
+L+ TPGRLWE I G L +I +LV+DE DR++ G+F E+++IL+ + T+T
Sbjct: 291 DVLIGTPGRLWEIISSGQGIGAALKQIEFLVVDEADRLLSQGNFKEVEDILNTLDRTDTD 350
Query: 371 QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 430
+ ++ SG P+ S RQT VFSAT L+N L G K K
Sbjct: 351 EDKKETNNSG--PD-------------SHSRQTLVFSATFDRGLQNKL---VGNFKYKDD 392
Query: 431 SKG-DPSIKRLQDLLNI--KSPKIVDLTEKIGITKTLTESKILCKHDEKD 477
G +++ L LN K PK +D+ + L E + C EKD
Sbjct: 393 LLGTKETLEYLLSKLNFREKPPKFIDMNPTKQMATGLKEGMVECGGTEKD 442
Score = 142 bits (359), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 106/155 (68%), Gaps = 4/155 (2%)
Query: 503 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPGRTLVFCNSISSVKRLT 561
K PK +D+ + L E + C EKD YLY +L + R +VF NSI +V+R+T
Sbjct: 412 KPPKFIDMNPTKQMATGLKEGMVECGGTEKDLYLYALLLLKQAKRAIVFANSIDAVRRIT 471
Query: 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGIEHVIH 618
LL L+ + LPLH+ M Q+ RL++++RF+D +NS +++ATDVAARGLDIP ++ VIH
Sbjct: 472 PLLQNLRLNALPLHSGMIQKARLRSVERFKDPSNSSPIVMVATDVAARGLDIPNVDLVIH 531
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
YHVP+ ++ Y+HRSGRTARA EG ++++ +E+
Sbjct: 532 YHVPKAADTYVHRSGRTARAGQEGASILVCGPEEV 566
Score = 48.1 bits (113), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD-------------- 1283
D ++HRSGRTARA EG ++++ +E+ ++ + K +
Sbjct: 539 DTYVHRSGRTARAGQEGASILVCGPEEVAAVRRLVAKVHAKSHIAKKDETSEAAKQGYYI 598
Query: 1284 --FPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
ID V+S +K+R+ LAK + + +K K ++ D + AA+D+ + D E
Sbjct: 599 RTLDIDRRVVSRLKERVTLAKQLADTTIAKEKHHKEDEAMRAAAEDLGVDYDSEEF 654
Score = 44.3 bits (103), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 14/84 (16%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPV-----KVACVVGGMSTEKQLRILNKCPHILVAT 1410
ALIL+PTRELA Q+ +H+ ++ V +A + GG+S KQ R+L +L+ T
Sbjct: 240 ALILSPTRELAHQLDHHL--TALFSEVLSSKPSIATLTGGLSLLKQQRLLRDA-DVLIGT 296
Query: 1411 PGAL-----SLKRIDLA-KSIEYL 1428
PG L S + I A K IE+L
Sbjct: 297 PGRLWEIISSGQGIGAALKQIEFL 320
>gi|6319618|ref|NP_009700.1| Mak5p [Saccharomyces cerevisiae S288c]
gi|586550|sp|P38112.1|MAK5_YEAST RecName: Full=ATP-dependent RNA helicase MAK5; AltName:
Full=Maintenance of killer protein 5
gi|536442|emb|CAA85100.1| MAK5 [Saccharomyces cerevisiae]
gi|547578|emb|CAA55539.1| YBR1119 [Saccharomyces cerevisiae]
gi|285810473|tpg|DAA07258.1| TPA: Mak5p [Saccharomyces cerevisiae S288c]
gi|392300984|gb|EIW12073.1| Mak5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 773
Score = 270 bits (691), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 178/545 (32%), Positives = 283/545 (51%), Gaps = 106/545 (19%)
Query: 765 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 167 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 225
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
GIPI+ ++ + F +K + K +LI
Sbjct: 226 GIPIVEKLI----------------------------------SNFSQKNK-KPISLIFT 250
Query: 884 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 934
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 251 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 307
Query: 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---------DRVTMTE 985
GR E ++ + + K+N L++DE DR+++ GHF E + I+ +R
Sbjct: 308 GRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEG 367
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG----DPSIKRLQDLLNIKS-PKI 1040
+S+ QT +FSAT + L + L+ + Q K ++ + I+ L ++ S P I
Sbjct: 368 SSKIWQTLIFSATFSIDLFDKLSSSR-QVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVI 426
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L
Sbjct: 427 IDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNL 486
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLATDVAARGLDIP 1144
+H+SM Q+ RLK+L+RF+ Q+ +++L+A+DVAARGLDIP
Sbjct: 487 GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIP 546
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLE 1197
G++HVIHYH+PR+++IYIHRSGRTARA +EG++ ++ E PL + NS+
Sbjct: 547 GVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQESMGPLRKLRKTLATKNSVS 606
Query: 1198 KKVD--------------LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNW 1240
++ +P PI+ +LS +++R LA E + +I N + DNW
Sbjct: 607 TDLNSRSTNRKPIKWQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNW 664
Query: 1241 LHRSG 1245
L ++
Sbjct: 665 LKKAA 669
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 189/635 (29%), Positives = 308/635 (48%), Gaps = 150/635 (23%)
Query: 47 ENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSA---NTNDPDDQVN 103
++N+E+V + D+E E N + S + +L +N ++ ELSA +++D D+Q N
Sbjct: 74 DSNKEKVGD---DQESVE--NESGSDSESELLEFKNLDDIKEGELSAASYSSSDEDEQGN 128
Query: 104 KTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN-IPETI 162
E + +PS + + NK++ D S V + EW + TI
Sbjct: 129 -IESSKLTDPSEDVDEDVDEDVLKENVFNKDINIDDISP-----VNLPEWTNLAPLSMTI 182
Query: 163 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 222
+++L F PT+IQ +P ++ D++G A TGSGKTLA+GIPI+ ++
Sbjct: 183 LQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAYGIPIVEKLI------- 234
Query: 223 EEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH---- 278
+ F +K + K +LI PTRELA QV +H
Sbjct: 235 ---------------------------SNFSQKNK-KPISLIFTPTRELAHQVTDHLKKI 266
Query: 279 ---ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHLTE 333
+L +Y+ + + GG+S +KQ R+L + I++ATPGR E ++ + +
Sbjct: 267 CEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKR 323
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
K+N L++DE DR+++ GHF E + I+ + ++E +R
Sbjct: 324 FSKVNTLILDEADRLLQDGHFDEFEKII-----------KHLLVERRK--------NREN 364
Query: 394 MTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVD 453
+S+ QT +FSAT + +D
Sbjct: 365 SEGSSKIWQTLIFSATFS----------------------------------------ID 384
Query: 454 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEK 513
L +K+ ++ + + + DE ++ ++QH L +I N K P I+D +
Sbjct: 385 LFDKLSSSRQVKDRRFKNNEDELNA-----VIQH----LMSKIH--FNSK-PVIIDTNPE 432
Query: 514 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 573
++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L
Sbjct: 433 SKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNLGIPAFQ 492
Query: 574 LHASMNQRQRLKNLDRFRDQN----------------NSILLATDVAARGLDIPGIEHVI 617
+H+SM Q+ RLK+L+RF+ Q+ +++L+A+DVAARGLDIPG++HVI
Sbjct: 493 IHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQHVI 552
Query: 618 HYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
HYH+PR+++IYIHRSGRTARA +EG++ ++ E
Sbjct: 553 HYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQE 587
Score = 47.8 bits (112), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 26/121 (21%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLEKKVD---------- 1280
D ++HRSGRTARA +EG++ ++ E PL + NS+ ++
Sbjct: 561 DIYIHRSGRTARAGSEGVSAMICSPQESMGPLRKLRKTLATKNSVSTDLNSRSTNRKPIK 620
Query: 1281 ----LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNWLEKAAKDMDIIIDD 1333
+P PI+ +LS +++R LA E + +I N + DNWL+KAA ++ I +D
Sbjct: 621 WQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNWLKKAADELGIDVDS 678
Query: 1334 E 1334
+
Sbjct: 679 D 679
Score = 44.3 bits (103), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 31/144 (21%)
Query: 1356 ALILAPTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHI 1406
+LI PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I
Sbjct: 246 SLIFTPTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQI 302
Query: 1407 LVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANS 1464
++ATPG +E LE DN L K ++ +I DE L+Q
Sbjct: 303 VIATPGRF----------LELLEK-------DNTLIKRFSKVNTLILDEADRLLQDGHFD 345
Query: 1465 RENALMSKALVSKRKELQSLLGKS 1488
++ LV +RK ++ G S
Sbjct: 346 EFEKIIKHLLVERRKNRENSEGSS 369
>gi|150951560|ref|XP_001387897.2| ATP-dependent RNA helicase [Scheffersomyces stipitis CBS 6054]
gi|284018096|sp|A3GG51.2|MAK5_PICST RecName: Full=ATP-dependent RNA helicase MAK5
gi|149388695|gb|EAZ63874.2| ATP-dependent RNA helicase [Scheffersomyces stipitis CBS 6054]
Length = 836
Score = 270 bits (691), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 193/559 (34%), Positives = 287/559 (51%), Gaps = 77/559 (13%)
Query: 723 EEIQSDEP-HSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIR 781
E +Q +P H ++L + + + + E + + NED F++ +
Sbjct: 184 EPVQESKPEHDEELSENVFQHSQFVLPDDEDINLPHWQNEDS--------NFSLSPYTLH 235
Query: 782 ALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841
L GF PT IQ +P A KD+VG A TGSGKTLA+GIPIL
Sbjct: 236 GLSVLGFDKPTPIQKKTIPLAAEG-KDVVGKAITGSGKTLAYGIPIL------------- 281
Query: 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK 901
E+ L L + N KK N +I APTRELA QV +H+ K
Sbjct: 282 -----------EKYLSNLSIINQNRQ---KKIINHPTGIIFAPTRELAHQVVSHLNSLAK 327
Query: 902 YTPVK---VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958
Y+P+ + + GG+S +KQ R+L+ P I+VATPGR+ E +Q L + +V
Sbjct: 328 YSPLSTNGIVSITGGLSIQKQERLLSHGPGIIVATPGRILELLQKDEDLTKRLASTDIIV 387
Query: 959 IDETDRMIESGHFPELKNILDRVTMTETSQPR--------QTFVFSATLTHSLKNSLNLK 1010
+DE DR+++ GHF E + ILD + ++P+ QT VFSAT + L L+
Sbjct: 388 LDEADRLLQDGHFEEFETILD---LFRKNRPKNKTFPWKWQTLVFSATFSRDLFGKLD-- 442
Query: 1011 KGQSKSKKVSKG------DPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKH 1062
K Q K+ S+G D + L D L K P +VD K ++ +TE+ + C
Sbjct: 443 KNQKSHKRNSEGSSLIGNDEILNLLNDKLKFKDTRPALVDANPKEIVSGNITEALVECGP 502
Query: 1063 DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 1122
E+D YLYYF+L + G TLVF NSI SVKRL L L +H+SM Q+QRL+ L+R
Sbjct: 503 TERDLYLYYFLLMYKGSTLVFANSIDSVKRLVPFLNNLNIPAFAIHSSMIQKQRLRALER 562
Query: 1123 FRD----QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
F+ + ++L+A+DVAARGLDIP I+HV HYH+PR++++YIHRSGRTARA EG+++
Sbjct: 563 FQKASEKNDTAVLIASDVAARGLDIPNIDHVAHYHLPRSADVYIHRSGRTARAGKEGVSV 622
Query: 1179 VLIESDEIPLYIKMF-----------NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEY 1227
+ E ++ L D+ PI+ ++S +K R+ +A +
Sbjct: 623 MFCSPQEASGPLRKLRRLVANNSTKGGRLNMHNDVKLLPIEMDLVSQLKPRVIIASKLAD 682
Query: 1228 LE-SKIKKNRPDNWLHRSG 1245
+ S + D+W+ ++
Sbjct: 683 ADISNTSTRKEDSWVKQAA 701
Score = 248 bits (632), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 181/526 (34%), Positives = 256/526 (48%), Gaps = 114/526 (21%)
Query: 144 EDMFVQMAEW----VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
+D + + W F++ + L GF PT IQ +P A KD+VG A TG
Sbjct: 211 DDEDINLPHWQNEDSNFSLSPYTLHGLSVLGFDKPTPIQKKTIPLAAEG-KDVVGKAITG 269
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKTLA+GIPIL E+ L L + N KK N
Sbjct: 270 SGKTLAYGIPIL------------------------EKYLSNLSIINQNRQ---KKIINH 302
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVAT 316
+I APTRELA QV +H+ KY+P+ + + GG+S +KQ R+L+ P I+VAT
Sbjct: 303 PTGIIFAPTRELAHQVVSHLNSLAKYSPLSTNGIVSITGGLSIQKQERLLSHGPGIIVAT 362
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+ E +Q L + +V+DE DR+++ GHF E + ILD + ++P+
Sbjct: 363 PGRILELLQKDEDLTKRLASTDIIVLDEADRLLQDGHFEEFETILD---LFRKNRPKNKT 419
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
FP QT VFSAT + L L+ K Q K+ S+G
Sbjct: 420 -----FP---------------WKWQTLVFSATFSRDLFGKLD--KNQKSHKRNSEGSSL 457
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
I ++LN+ L +K+ T
Sbjct: 458 IGN-DEILNL-------LNDKLKFKDT--------------------------------- 476
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556
P +VD K ++ +TE+ + C E+D YLYYF+L + G TLVF NSI S
Sbjct: 477 -------RPALVDANPKEIVSGNITEALVECGPTERDLYLYYFLLMYKGSTLVFANSIDS 529
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD----QNNSILLATDVAARGLDIPG 612
VKRL L L +H+SM Q+QRL+ L+RF+ + ++L+A+DVAARGLDIP
Sbjct: 530 VKRLVPFLNNLNIPAFAIHSSMIQKQRLRALERFQKASEKNDTAVLIASDVAARGLDIPN 589
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI--PLK 656
I+HV HYH+PR++++YIHRSGRTARA EG++V+ E PL+
Sbjct: 590 IDHVAHYHLPRSADVYIHRSGRTARAGKEGVSVMFCSPQEASGPLR 635
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPG 1412
+I APTRELA QV +H+ KY+P+ + + GG+S +KQ R+L+ P I+VATPG
Sbjct: 305 GIIFAPTRELAHQVVSHLNSLAKYSPLSTNGIVSITGGLSIQKQERLLSHGPGIIVATPG 364
Query: 1413 AL 1414
+
Sbjct: 365 RI 366
Score = 41.2 bits (95), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF-----------NSLEKKVDLPDFPI 1286
D ++HRSGRTARA EG++++ E ++ L D+ PI
Sbjct: 603 DVYIHRSGRTARAGKEGVSVMFCSPQEASGPLRKLRRLVANNSTKGGRLNMHNDVKLLPI 662
Query: 1287 DESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDI 1329
+ ++S +K R+ +A + + S + D+W+++AA+++ +
Sbjct: 663 EMDLVSQLKPRVIIASKLADADISNTSTRKEDSWVKQAAEELGV 706
>gi|448512603|ref|XP_003866769.1| Mak5 nucleolar DEAD-box RNA helicase [Candida orthopsilosis Co
90-125]
gi|380351107|emb|CCG21330.1| Mak5 nucleolar DEAD-box RNA helicase [Candida orthopsilosis Co
90-125]
Length = 800
Score = 270 bits (690), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 182/491 (37%), Positives = 267/491 (54%), Gaps = 61/491 (12%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
F TPT IQ +P AL KD+VG A TGSGKTLA+GIPIL
Sbjct: 199 FTTPTPIQKRTIPIALEG-KDVVGKATTGSGKTLAYGIPIL------------------- 238
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 907
E+ L+ L++ N E K N +I PTRELA QV +H+ +Y+P+ V
Sbjct: 239 -----EKYLQSLDQVKQNVKE---KKINHPNGVIFTPTRELAHQVVDHLNKLAQYSPLSV 290
Query: 908 ACVV---GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+V GG++ +KQ R+L P I+VATPGR E + + + +V+DE DR
Sbjct: 291 KGIVSVTGGLAIQKQQRLLKMGPGIIVATPGRFLELCENDPELAKRMSLTDIVVLDEADR 350
Query: 965 MIESGHFPELKNILD-----RVTMTETSQPRQTFVFSATLTHSLKNSLNLK--------K 1011
+++ GHF E + IL+ R + QT VFSAT + L L+ + K
Sbjct: 351 LLQDGHFEEFEKILELFGKNRPKNKNIAWKWQTLVFSATFSRDLFGKLDKQQKPKIKNQK 410
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
Q + + D I+ L + LN K P ++D K ++ +TE+ + C E+D YL
Sbjct: 411 QQIDGNSLVQNDEIIELLNEKLNFKDKKPILIDANPKEIVSGQITEALVECGATERDLYL 470
Query: 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR----D 1125
YYF+L + G TLVF NSI SVKRL LL LK +H+SM Q+QRL++L+RF+
Sbjct: 471 YYFLLMYKGSTLVFANSIDSVKRLVPLLENLKIPAFAIHSSMEQKQRLRSLERFKAALEK 530
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
++L+A+DVAARGLDIP I+HV HYH+PR++++YIHRSGRTARA EG++++ E
Sbjct: 531 NETAVLVASDVAARGLDIPKIDHVAHYHLPRSADVYIHRSGRTARAGREGVSVMFCSPQE 590
Query: 1186 I--PLY----IKMFNSLEKKV----DLPDFPIDESVLSLIKKRIDLAKSIEYLE-SKIKK 1234
PL I N+ K++ D+ PI+ ++S ++ R++LA + S
Sbjct: 591 ASGPLRKLRKIVASNAGNKRISAHNDVKLLPIEMDLVSQLRPRVELAGKLADARISSTAT 650
Query: 1235 NRPDNWLHRSG 1245
+ D+W+ ++
Sbjct: 651 RKEDSWVKQAA 661
Score = 247 bits (631), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 174/491 (35%), Positives = 250/491 (50%), Gaps = 108/491 (21%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
F TPT IQ +P AL KD+VG A TGSGKTLA+GIPIL
Sbjct: 199 FTTPTPIQKRTIPIALEG-KDVVGKATTGSGKTLAYGIPIL------------------- 238
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 290
E+ L+ L++ N E K N +I PTRELA QV +H+ +Y+P+ V
Sbjct: 239 -----EKYLQSLDQVKQNVKE---KKINHPNGVIFTPTRELAHQVVDHLNKLAQYSPLSV 290
Query: 291 ACVV---GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+V GG++ +KQ R+L P I+VATPGR E + + + +V+DE DR
Sbjct: 291 KGIVSVTGGLAIQKQQRLLKMGPGIIVATPGRFLELCENDPELAKRMSLTDIVVLDEADR 350
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
+++ GHF E + IL+ + + P+ KNI + QT VFS
Sbjct: 351 LLQDGHFEEFEKILE--------------LFGKNRPKNKNI---------AWKWQTLVFS 387
Query: 408 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467
AT + L L+ ++ PKI + ++I +
Sbjct: 388 ATFSRDLFGKLDKQQ-------------------------KPKIKNQKQQI-------DG 415
Query: 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS--PKIVDLTEKIGITKTLTESKI 525
L ++DE + E + + LN K P ++D K ++ +TE+ +
Sbjct: 416 NSLVQNDE----------------IIELLNEKLNFKDKKPILIDANPKEIVSGQITEALV 459
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
C E+D YLYYF+L + G TLVF NSI SVKRL LL LK +H+SM Q+QRL+
Sbjct: 460 ECGATERDLYLYYFLLMYKGSTLVFANSIDSVKRLVPLLENLKIPAFAIHSSMEQKQRLR 519
Query: 586 NLDRFR----DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
+L+RF+ ++L+A+DVAARGLDIP I+HV HYH+PR++++YIHRSGRTARA E
Sbjct: 520 SLERFKAALEKNETAVLVASDVAARGLDIPKIDHVAHYHLPRSADVYIHRSGRTARAGRE 579
Query: 642 GLTVVLIESDE 652
G++V+ E
Sbjct: 580 GVSVMFCSPQE 590
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 1355 DALILAPTRELAIQVQNHILDAGKYTPVKVACVV---GGMSTEKQLRILNKCPHILVATP 1411
+ +I PTRELA QV +H+ +Y+P+ V +V GG++ +KQ R+L P I+VATP
Sbjct: 261 NGVIFTPTRELAHQVVDHLNKLAQYSPLSVKGIVSVTGGLAIQKQQRLLKMGPGIIVATP 320
Query: 1412 G 1412
G
Sbjct: 321 G 321
>gi|149248082|ref|XP_001528428.1| hypothetical protein LELG_00948 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152032565|sp|A5DUB2.1|MAK5_LODEL RecName: Full=ATP-dependent RNA helicase MAK5
gi|146448382|gb|EDK42770.1| hypothetical protein LELG_00948 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 855
Score = 270 bits (689), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 180/506 (35%), Positives = 275/506 (54%), Gaps = 79/506 (15%)
Query: 765 VQMAEW----VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
+ + EW ++ + I+ L F TPT IQ +P AL KD++G A TGSGKT
Sbjct: 212 IDLPEWGEDKIETCLSPYILNGLSNMKFTTPTPIQKRTIPLALEG-KDVIGKATTGSGKT 270
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LA+GIPIL + L+ V ++ E K N +
Sbjct: 271 LAYGIPILEKYIQSLDT-----------------VKRKVRE----------KVVNHPTGI 303
Query: 881 ILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPGRL 937
I APTRELA QV +H+ +Y+P+ + V GG+S +KQ R+L+ P I+VATPGR+
Sbjct: 304 IFAPTRELAHQVVDHLNKIAQYSPLSTKGIVSVTGGLSIQKQERLLSFGPGIIVATPGRM 363
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR------- 990
E Q + L + +V+DE DR+++ GHF E + IL+ + ++P+
Sbjct: 364 LELCQNDQELVKRLSMTDIIVLDEADRLLQDGHFEEFEKILE---LFNKNRPKNDKSIEW 420
Query: 991 --QTFVFSATLTHSLKNSLNLKKGQ----SKSKKVSKGDPS---------IKRLQDLLNI 1035
QT VFSAT + L L+ ++ Q K ++K D I+ L++ L
Sbjct: 421 KWQTLVFSATFSRDLFGKLDKQQKQKSVKGNGKALNKADSGNSLVQNDEIIELLREKLRF 480
Query: 1036 K--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 1093
K +P +VD K ++ +TE+ + C E+D YLYYF+L + G TLVF NSI SVKRL
Sbjct: 481 KDKAPSLVDANPKEIVSGQITEALVECGPLERDLYLYYFLLMYKGSTLVFANSIDSVKRL 540
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN----NSILLATDVAARGLDIPGIEHV 1149
LL L +H+SM Q+QRL++L+RF+D + ++L+A+DVAARGLDIP I+HV
Sbjct: 541 VPLLNNLNIPAFAIHSSMIQKQRLRSLERFKDASEKNQTAVLVASDVAARGLDIPNIDHV 600
Query: 1150 IHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF---------NSLEKKV 1200
HYH+PR++++YIHRSGRTARA EG++++ E ++ N+ +K+
Sbjct: 601 AHYHLPRSADVYIHRSGRTARAGKEGVSVMFCSPQEASGPLRKLRKLVASNAANNKNQKI 660
Query: 1201 ----DLPDFPIDESVLSLIKKRIDLA 1222
D+ P++ ++S ++ R++LA
Sbjct: 661 NVHSDVKLLPVEMDLVSQLRPRVELA 686
Score = 249 bits (637), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 183/524 (34%), Positives = 265/524 (50%), Gaps = 108/524 (20%)
Query: 148 VQMAEW----VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
+ + EW ++ + I+ L F TPT IQ +P AL KD++G A TGSGKT
Sbjct: 212 IDLPEWGEDKIETCLSPYILNGLSNMKFTTPTPIQKRTIPLALEG-KDVIGKATTGSGKT 270
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LA+GIPIL + L+ V ++ E K N +
Sbjct: 271 LAYGIPILEKYIQSLDT-----------------VKRKVRE----------KVVNHPTGI 303
Query: 264 ILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPGRL 320
I APTRELA QV +H+ +Y+P+ + V GG+S +KQ R+L+ P I+VATPGR+
Sbjct: 304 IFAPTRELAHQVVDHLNKIAQYSPLSTKGIVSVTGGLSIQKQERLLSFGPGIIVATPGRM 363
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
E Q + L + +V+DE DR+++ GHF E + IL+ + ++P+
Sbjct: 364 LELCQNDQELVKRLSMTDIIVLDEADRLLQDGHFEEFEKILE---LFNKNRPKND----- 415
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
K+I QT VFSAT + L L+ Q K K V KG+
Sbjct: 416 -----KSI---------EWKWQTLVFSATFSRDLFGKLD---KQQKQKSV-KGN------ 451
Query: 441 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500
K L K D +S + + E +++ L
Sbjct: 452 --------------------------GKALNKADSGNSLVQ-------NDEIIELLREKL 478
Query: 501 NIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
K +P +VD K ++ +TE+ + C E+D YLYYF+L + G TLVF NSI SVK
Sbjct: 479 RFKDKAPSLVDANPKEIVSGQITEALVECGPLERDLYLYYFLLMYKGSTLVFANSIDSVK 538
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN----NSILLATDVAARGLDIPGIE 614
RL LL L +H+SM Q+QRL++L+RF+D + ++L+A+DVAARGLDIP I+
Sbjct: 539 RLVPLLNNLNIPAFAIHSSMIQKQRLRSLERFKDASEKNQTAVLVASDVAARGLDIPNID 598
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI--PLK 656
HV HYH+PR++++YIHRSGRTARA EG++V+ E PL+
Sbjct: 599 HVAHYHLPRSADVYIHRSGRTARAGKEGVSVMFCSPQEASGPLR 642
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPG 1412
+I APTRELA QV +H+ +Y+P+ + V GG+S +KQ R+L+ P I+VATPG
Sbjct: 302 GIIFAPTRELAHQVVDHLNKIAQYSPLSTKGIVSVTGGLSIQKQERLLSFGPGIIVATPG 361
Query: 1413 AL 1414
+
Sbjct: 362 RM 363
>gi|291001145|ref|XP_002683139.1| predicted protein [Naegleria gruberi]
gi|284096768|gb|EFC50395.1| predicted protein [Naegleria gruberi]
Length = 460
Score = 269 bits (687), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 165/477 (34%), Positives = 268/477 (56%), Gaps = 48/477 (10%)
Query: 783 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842
LY+ GF PT IQ +P A+ + DI+ AAETGSGKTLAF +PI+ ++ EN
Sbjct: 1 LYRLGFYKPTPIQEESIPKAIGQQADILAAAETGSGKTLAFVLPIIDELMKLKEN----- 55
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 902
E ++++++ + T F +L +LIL PTRELA+QV +HI +
Sbjct: 56 -----------EPAQQVKDDESRTDMF------QLRSLILLPTRELALQVCSHIEAVIRN 98
Query: 903 TPVKVACVVGGMSTEKQLR-ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
T +KV +VGG++ EKQ+R I + P I+VATPGR W +I G F + + +LVIDE
Sbjct: 99 TSLKVVGLVGGLNEEKQIREIHVQKPDIIVATPGRYWFYIDKGMFASNSILGLRFLVIDE 158
Query: 962 TDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK 1021
DRM+ HF EL++IL +T+ + + + + + + Q K +
Sbjct: 159 ADRMVADAHFFELQSILRYITIERFKR--------NYINQKEEEQVEIPQEQDAEHKKKE 210
Query: 1022 GDPS----IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 1077
+ I+++ +L++K+P +VDLT + TL E+ I ++K YLYYF+ +
Sbjct: 211 KETKTQKIIQKILAILDMKNPVMVDLTTSNLLAHTLQEAFIQSTREDKVLYLYYFLTIYS 270
Query: 1078 GRTLVFCNSISSVKRLTQLLTML----------KCSPLPLHASMNQRQRLKNLDRFRDQN 1127
GRT+VF N+I V+ + +L L + + LH M+Q+ R KNL++F+
Sbjct: 271 GRTVVFTNNIKVVRFIGNILKELFNKGPNAKQTSITIVSLHGKMDQQSRFKNLEKFKKAE 330
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI- 1186
NSIL+ TDV ARG+DIP +E+V+H+++P ++ YIHR GR+ RA +G +L ++ +E
Sbjct: 331 NSILITTDVFARGIDIPDVENVVHFNIPIDTKTYIHRCGRSGRAGKQGFSLAIVSPEERK 390
Query: 1187 PLYIKMFNSLEKKVDLPDFPIDE-SVLSLIKKRIDLAKSIEYLES-KIKKNRPDNWL 1241
Y + ++ + ++P FP+ +L +++KR++LA IE LE K + + +W
Sbjct: 391 SFYHILRDTRGEGSEMPPFPMSHPDLLEVLRKRVNLAIEIEKLEERKAARTQEQDWF 447
Score = 145 bits (367), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 166/333 (49%), Gaps = 63/333 (18%)
Query: 166 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225
LY+ GF PT IQ +P A+ + DI+ AAETGSGKTLAF +PI+ ++ EN
Sbjct: 1 LYRLGFYKPTPIQEESIPKAIGQQADILAAAETGSGKTLAFVLPIIDELMKLKEN----- 55
Query: 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 285
E ++++++ + T F +L +LIL PTRELA+QV +HI +
Sbjct: 56 -----------EPAQQVKDDESRTDMF------QLRSLILLPTRELALQVCSHIEAVIRN 98
Query: 286 TPVKVACVVGGMSTEKQLR-ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
T +KV +VGG++ EKQ+R I + P I+VATPGR W +I G F + + +LVIDE
Sbjct: 99 TSLKVVGLVGGLNEEKQIREIHVQKPDIIVATPGRYWFYIDKGMFASNSILGLRFLVIDE 158
Query: 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404
DRM+ H F EL++IL +T+ +
Sbjct: 159 ADRMVADAH----------------------------FFELQSILRYITIERFKR----- 185
Query: 405 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS----IKRLQDLLNIKSPKIVDLTEKIGI 460
+ + + + + Q K + + I+++ +L++K+P +VDLT +
Sbjct: 186 ---NYINQKEEEQVEIPQEQDAEHKKKEKETKTQKIIQKILAILDMKNPVMVDLTTSNLL 242
Query: 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
TL E+ I ++K YLYYF+ + GRT+
Sbjct: 243 AHTLQEAFIQSTREDKVLYLYYFLTIYSGRTVV 275
Score = 134 bits (336), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 107/171 (62%), Gaps = 10/171 (5%)
Query: 492 LCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 551
+ ++I +L++K+P +VDLT + TL E+ I ++K YLYYF+ + GRT+VF
Sbjct: 218 IIQKILAILDMKNPVMVDLTTSNLLAHTLQEAFIQSTREDKVLYLYYFLTIYSGRTVVFT 277
Query: 552 NSISSVKRLTQLLTML----------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
N+I V+ + +L L + + LH M+Q+ R KNL++F+ NSIL+ T
Sbjct: 278 NNIKVVRFIGNILKELFNKGPNAKQTSITIVSLHGKMDQQSRFKNLEKFKKAENSILITT 337
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DV ARG+DIP +E+V+H+++P ++ YIHR GR+ RA +G ++ ++ +E
Sbjct: 338 DVFARGIDIPDVENVVHFNIPIDTKTYIHRCGRSGRAGKQGFSLAIVSPEE 388
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 1346 ESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR-ILNKCP 1404
ESR + +LIL PTRELA+QV +HI + T +KV +VGG++ EKQ+R I + P
Sbjct: 65 ESRTDMFQLRSLILLPTRELALQVCSHIEAVIRNTSLKVVGLVGGLNEEKQIREIHVQKP 124
Query: 1405 HILVATPG 1412
I+VATPG
Sbjct: 125 DIIVATPG 132
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEI-PLYIKMFNSLEKKVDLPDFPIDE-SVLSLIKKR 1297
++HR GR+ RA +G +L ++ +E Y + ++ + ++P FP+ +L +++KR
Sbjct: 364 YIHRCGRSGRAGKQGFSLAIVSPEERKSFYHILRDTRGEGSEMPPFPMSHPDLLEVLRKR 423
Query: 1298 IDLAKSIEYLES-KIKKNRPDNWLEKAAKDMDIIIDD 1333
++LA IE LE K + + +W K A MDI +D+
Sbjct: 424 VNLAIEIEKLEERKAARTQEQDWFTKQAAAMDIDLDE 460
>gi|349576517|dbj|GAA21688.1| K7_Mak5p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 773
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 177/545 (32%), Positives = 283/545 (51%), Gaps = 106/545 (19%)
Query: 765 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 167 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 225
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
GIPI+ ++ + F +K + K +LI
Sbjct: 226 GIPIVEKLI----------------------------------SNFSQKNK-KPISLIFT 250
Query: 884 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 934
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 251 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 307
Query: 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---------DRVTMTE 985
GR E ++ + + K++ L++DE DR+++ GHF E + I+ +R
Sbjct: 308 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEG 367
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG----DPSIKRLQDLLNIKS-PKI 1040
+S+ QT +FSAT + L + L+ + Q K ++ + I+ L ++ S P I
Sbjct: 368 SSKIWQTLIFSATFSIDLFDKLSSSR-QVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVI 426
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L
Sbjct: 427 IDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNL 486
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLATDVAARGLDIP 1144
+H+SM Q+ RLK+L+RF+ Q+ +++L+A+DVAARGLDIP
Sbjct: 487 GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIP 546
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLE 1197
G++HVIHYH+PR+++IYIHRSGRTARA +EG++ ++ E PL + NS+
Sbjct: 547 GVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQESMGPLRKLRKTLATKNSVS 606
Query: 1198 KKVD--------------LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNW 1240
++ +P PI+ +LS +++R LA E + +I N + DNW
Sbjct: 607 TDLNSRSTNRKPIKWQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNW 664
Query: 1241 LHRSG 1245
L ++
Sbjct: 665 LKKAA 669
Score = 249 bits (636), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 188/635 (29%), Positives = 308/635 (48%), Gaps = 150/635 (23%)
Query: 47 ENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSA---NTNDPDDQVN 103
++N+E+V + D+E E N + S + +L +N ++ ELSA +++D D+Q N
Sbjct: 74 DSNKEKVGD---DQESVE--NESGSDSESELLEFKNLDDIKEGELSAASYSSSDEDEQGN 128
Query: 104 KTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN-IPETI 162
E + +PS + + NK++ D S V + EW + TI
Sbjct: 129 -IESSKLTDPSEDVDEDVDEDVLKENVFNKDINIDDISP-----VNLPEWTNLAPLSMTI 182
Query: 163 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 222
+++L F PT+IQ +P ++ D++G A TGSGKTLA+GIPI+ ++
Sbjct: 183 LQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAYGIPIVEKLI------- 234
Query: 223 EEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH---- 278
+ F +K + K +LI PTRELA QV +H
Sbjct: 235 ---------------------------SNFSQKNK-KPISLIFTPTRELAHQVTDHLKKI 266
Query: 279 ---ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHLTE 333
+L +Y+ + + GG+S +KQ R+L + I++ATPGR E ++ + +
Sbjct: 267 CEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKR 323
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
K++ L++DE DR+++ GHF E + I+ + ++E +R
Sbjct: 324 FSKVDTLILDEADRLLQDGHFDEFEKII-----------KHLLVERRK--------NREN 364
Query: 394 MTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVD 453
+S+ QT +FSAT + +D
Sbjct: 365 SEGSSKIWQTLIFSATFS----------------------------------------ID 384
Query: 454 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEK 513
L +K+ ++ + + + DE ++ ++QH L +I N K P I+D +
Sbjct: 385 LFDKLSSSRQVKDRRFKNNEDELNA-----VIQH----LMSKIH--FNSK-PVIIDTNPE 432
Query: 514 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 573
++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L
Sbjct: 433 SKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNLGIPAFQ 492
Query: 574 LHASMNQRQRLKNLDRFRDQN----------------NSILLATDVAARGLDIPGIEHVI 617
+H+SM Q+ RLK+L+RF+ Q+ +++L+A+DVAARGLDIPG++HVI
Sbjct: 493 IHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQHVI 552
Query: 618 HYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
HYH+PR+++IYIHRSGRTARA +EG++ ++ E
Sbjct: 553 HYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQE 587
Score = 47.4 bits (111), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 26/121 (21%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLEKKVD---------- 1280
D ++HRSGRTARA +EG++ ++ E PL + NS+ ++
Sbjct: 561 DIYIHRSGRTARAGSEGVSAMICSPQESMGPLRKLRKTLATKNSVSTDLNSRSTNRKPIK 620
Query: 1281 ----LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNWLEKAAKDMDIIIDD 1333
+P PI+ +LS +++R LA E + +I N + DNWL+KAA ++ I +D
Sbjct: 621 WQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNWLKKAADELGIDVDS 678
Query: 1334 E 1334
+
Sbjct: 679 D 679
Score = 46.6 bits (109), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 31/144 (21%)
Query: 1356 ALILAPTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHI 1406
+LI PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I
Sbjct: 246 SLIFTPTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQI 302
Query: 1407 LVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANS 1464
++ATPG +E LE DN L K +D +I DE L+Q
Sbjct: 303 VIATPGRF----------LELLEK-------DNTLIKRFSKVDTLILDEADRLLQDGHFD 345
Query: 1465 RENALMSKALVSKRKELQSLLGKS 1488
++ LV +RK ++ G S
Sbjct: 346 EFEKIIKHLLVERRKNRENSEGSS 369
>gi|344303044|gb|EGW33318.1| hypothetical protein SPAPADRAFT_50211 [Spathaspora passalidarum NRRL
Y-27907]
Length = 781
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 174/488 (35%), Positives = 263/488 (53%), Gaps = 61/488 (12%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
F PT IQ +P AL KD++G A TGSGKTLA+GIPIL
Sbjct: 207 FSKPTPIQKKAIPLALEG-KDVIGKATTGSGKTLAYGIPIL------------------- 246
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK- 906
E+ L L N + K N ++ APTRELA QV +H+ + KY+P+
Sbjct: 247 -----EKYLSSLSTIKQNVKD---KIVNNPTGIVFAPTRELAHQVVSHLNELAKYSPLST 298
Query: 907 --VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+ + GG+S +KQ R+L P I+VATPGR E +Q + + LV+DE DR
Sbjct: 299 RGIVSITGGLSIQKQERLLAHGPGIIVATPGRFLELLQNDEQLTKRMASTDILVLDEADR 358
Query: 965 MIESGHFPELKNILDRVTMTETSQPR--------QTFVFSATLTHSLKNSLN-LKKGQSK 1015
+++ GHF E + IL+ + S+P+ QT VFSAT + L L+ +K ++K
Sbjct: 359 LLQDGHFEEFEKILE---LFGKSRPKNKSMQWKWQTLVFSATFSRDLFGKLDKHQKNKAK 415
Query: 1016 SKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073
+ D + L + L K P ++D K ++ +TE+ + C E+D YLYYF+
Sbjct: 416 GNSLMDNDEIVTLLNEKLKFKDSKPALIDANPKEIVSGQITEALVECGPTERDLYLYYFL 475
Query: 1074 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN----S 1129
L + G TLVF NSI SVKRL L L +H+SM Q+QRL+ L+RF+ + S
Sbjct: 476 LMYKGSTLVFANSIDSVKRLVPFLNNLNIPAFSIHSSMIQKQRLRALERFKAASEKNEVS 535
Query: 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLY 1189
+L+A+DVAARGLDIP I+HV+HYH+PR++++YIHRSGRTARA EG++++ E
Sbjct: 536 VLVASDVAARGLDIPNIDHVVHYHLPRSADVYIHRSGRTARAGREGVSVMFCSPQEASGP 595
Query: 1190 IKMF-----------NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRP 1237
++ + L D+ PI+ ++S +++R+ ++ + SK +
Sbjct: 596 LRKLRRLVASNSTQGSRLNMHTDVKLLPIEMDLVSQLRERVTVSSKLADASISKTSTRKE 655
Query: 1238 DNWLHRSG 1245
D+W+ ++
Sbjct: 656 DSWIKQAA 663
Score = 145 bits (367), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 115/175 (65%), Gaps = 12/175 (6%)
Query: 494 EEIQDLLNIK------SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547
+EI LLN K P ++D K ++ +TE+ + C E+D YLYYF+L + G T
Sbjct: 423 DEIVTLLNEKLKFKDSKPALIDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGST 482
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN----SILLATDV 603
LVF NSI SVKRL L L +H+SM Q+QRL+ L+RF+ + S+L+A+DV
Sbjct: 483 LVFANSIDSVKRLVPFLNNLNIPAFSIHSSMIQKQRLRALERFKAASEKNEVSVLVASDV 542
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI--PLK 656
AARGLDIP I+HV+HYH+PR++++YIHRSGRTARA EG++V+ E PL+
Sbjct: 543 AARGLDIPNIDHVVHYHLPRSADVYIHRSGRTARAGREGVSVMFCSPQEASGPLR 597
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 158/329 (48%), Gaps = 57/329 (17%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
F PT IQ +P AL KD++G A TGSGKTLA+GIPIL
Sbjct: 207 FSKPTPIQKKAIPLALEG-KDVIGKATTGSGKTLAYGIPIL------------------- 246
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK- 289
E+ L L N + K N ++ APTRELA QV +H+ + KY+P+
Sbjct: 247 -----EKYLSSLSTIKQNVKD---KIVNNPTGIVFAPTRELAHQVVSHLNELAKYSPLST 298
Query: 290 --VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+ + GG+S +KQ R+L P I+VATPGR E +Q + + LV+DE DR
Sbjct: 299 RGIVSITGGLSIQKQERLLAHGPGIIVATPGRFLELLQNDEQLTKRMASTDILVLDEADR 358
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
+++ GHF E + IL+ + S+P+ ++ QT VFS
Sbjct: 359 LLQDGHFEEFEKILE---LFGKSRPKNKSMQ--------------------WKWQTLVFS 395
Query: 408 ATLTHSLKNSLN-LKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTL 464
AT + L L+ +K ++K + D + L + L K P ++D K ++ +
Sbjct: 396 ATFSRDLFGKLDKHQKNKAKGNSLMDNDEIVTLLNEKLKFKDSKPALIDANPKEIVSGQI 455
Query: 465 TESKILCKHDEKDSYLYYFILQHPGRTLC 493
TE+ + C E+D YLYYF+L + G TL
Sbjct: 456 TEALVECGPTERDLYLYYFLLMYKGSTLV 484
Score = 60.5 bits (145), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ APTRELA QV +H+ + KY+P+ + + GG+S +KQ R+L P I+VATPG
Sbjct: 270 GIVFAPTRELAHQVVSHLNELAKYSPLSTRGIVSITGGLSIQKQERLLAHGPGIIVATPG 329
Score = 44.7 bits (104), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 25/154 (16%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMF-----------NSLEKKVDLPDFPI 1286
D ++HRSGRTARA EG++++ E ++ + L D+ PI
Sbjct: 565 DVYIHRSGRTARAGREGVSVMFCSPQEASGPLRKLRRLVASNSTQGSRLNMHTDVKLLPI 624
Query: 1287 DESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDM-------------DIIID 1332
+ ++S +++R+ ++ + SK + D+W+++AA+++ DII
Sbjct: 625 EMDLVSQLRERVTVSSKLADASISKTSTRKEDSWIKQAAEELGVEDLSDIENFEDDIIKK 684
Query: 1333 DENLIQPNQLLIFESRNLRYSWDALILAPTRELA 1366
+ L E + LRY L+ P R+ A
Sbjct: 685 QRKRKESKMLGKDEMKGLRYELKQLLATPIRKNA 718
>gi|190408703|gb|EDV11968.1| ATP-dependent RNA helicase MAK5 [Saccharomyces cerevisiae RM11-1a]
Length = 769
Score = 268 bits (685), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 177/545 (32%), Positives = 282/545 (51%), Gaps = 106/545 (19%)
Query: 765 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 163 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 221
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
GIPI+ ++ + F +K + K +LI
Sbjct: 222 GIPIVEKLI----------------------------------SNFSRKNK-KPISLIFT 246
Query: 884 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 934
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 247 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 303
Query: 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---------DRVTMTE 985
GR E ++ + + K++ L++DE DR+++ GHF E + I+ +R
Sbjct: 304 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEG 363
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS----IKRLQDLLNIKS-PKI 1040
+S+ QT +FSAT + L + L+ + Q K ++ + I+ L ++ S P I
Sbjct: 364 SSKIWQTLIFSATFSIDLFDKLSSSR-QVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVI 422
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L
Sbjct: 423 IDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNL 482
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLATDVAARGLDIP 1144
+H+SM Q+ RLK+L+RF+ Q+ +++L+A+DVAARGLDIP
Sbjct: 483 GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIP 542
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLE 1197
G++HVIHYH+PR+++IYIHRSGRTARA EG++ ++ E PL + NS+
Sbjct: 543 GVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVS 602
Query: 1198 KKVD--------------LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNW 1240
++ +P PI+ +LS +++R LA E + +I N + DNW
Sbjct: 603 TDLNSRPTNRKPIKWQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNW 660
Query: 1241 LHRSG 1245
L ++
Sbjct: 661 LKKAA 665
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 163/531 (30%), Positives = 260/531 (48%), Gaps = 136/531 (25%)
Query: 148 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 163 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 221
Query: 207 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
GIPI+ ++ + F +K + K +LI
Sbjct: 222 GIPIVEKLI----------------------------------SNFSRKNK-KPISLIFT 246
Query: 267 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 317
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 247 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 303
Query: 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
GR E ++ + + K++ L++DE DR+++ GHF E + I+ + ++
Sbjct: 304 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKII-----------KHLLV 352
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
E +R +S+ QT +FSAT +
Sbjct: 353 ERRK--------NRENSEGSSKIWQTLIFSATFS-------------------------- 378
Query: 438 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497
+DL +K+ ++ + + + DE ++ ++QH L +I
Sbjct: 379 --------------IDLFDKLSSSRQVKDRRFKNNEDELNA-----VIQH----LMSKIH 415
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
N K P I+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SV
Sbjct: 416 --FNSK-PVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSV 472
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLAT 601
K+LT L L +H+SM Q+ RLK+L+RF+ Q+ +++L+A+
Sbjct: 473 KKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIAS 532
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DVAARGLDIPG++HVIHYH+PR+++IYIHRSGRTARA EG++ ++ E
Sbjct: 533 DVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQE 583
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 31/144 (21%)
Query: 1356 ALILAPTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHI 1406
+LI PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I
Sbjct: 242 SLIFTPTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQI 298
Query: 1407 LVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANS 1464
++ATPG +E LE DN L K +D +I DE L+Q
Sbjct: 299 VIATPGRF----------LELLEK-------DNTLIKRFSKVDTLILDEADRLLQDGHFD 341
Query: 1465 RENALMSKALVSKRKELQSLLGKS 1488
++ LV +RK ++ G S
Sbjct: 342 EFEKIIKHLLVERRKNRENSEGSS 365
Score = 46.2 bits (108), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 26/121 (21%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLEKKVD---------- 1280
D ++HRSGRTARA EG++ ++ E PL + NS+ ++
Sbjct: 557 DIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVSTDLNSRPTNRKPIK 616
Query: 1281 ----LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNWLEKAAKDMDIIIDD 1333
+P PI+ +LS +++R LA E + +I N + DNWL+KAA ++ I +D
Sbjct: 617 WQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNWLKKAADELGIDVDS 674
Query: 1334 E 1334
+
Sbjct: 675 D 675
>gi|207347639|gb|EDZ73745.1| YBR142Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|290878158|emb|CBK39217.1| Mak5p [Saccharomyces cerevisiae EC1118]
Length = 769
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 177/545 (32%), Positives = 282/545 (51%), Gaps = 106/545 (19%)
Query: 765 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 163 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 221
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
GIPI+ ++ + F +K + K +LI
Sbjct: 222 GIPIVEKLI----------------------------------SNFSRKNK-KPISLIFT 246
Query: 884 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 934
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 247 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 303
Query: 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---------DRVTMTE 985
GR E ++ + + K++ L++DE DR+++ GHF E + I+ +R
Sbjct: 304 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEG 363
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS----IKRLQDLLNIKS-PKI 1040
+S+ QT +FSAT + L + L+ + Q K ++ + I+ L ++ S P I
Sbjct: 364 SSKIWQTLIFSATFSIDLFDKLSSSR-QVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVI 422
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L
Sbjct: 423 IDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNL 482
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLATDVAARGLDIP 1144
+H+SM Q+ RLK+L+RF+ Q+ +++L+A+DVAARGLDIP
Sbjct: 483 GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIP 542
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLE 1197
G++HVIHYH+PR+++IYIHRSGRTARA EG++ ++ E PL + NS+
Sbjct: 543 GVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVS 602
Query: 1198 KKVD--------------LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNW 1240
++ +P PI+ +LS +++R LA E + +I N + DNW
Sbjct: 603 TDLNSRPTNRKPIKWQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNW 660
Query: 1241 LHRSG 1245
L ++
Sbjct: 661 LKKAA 665
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 163/531 (30%), Positives = 260/531 (48%), Gaps = 136/531 (25%)
Query: 148 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 163 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 221
Query: 207 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
GIPI+ ++ + F +K + K +LI
Sbjct: 222 GIPIVEKLI----------------------------------SNFSRKNK-KPISLIFT 246
Query: 267 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 317
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 247 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 303
Query: 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
GR E ++ + + K++ L++DE DR+++ GHF E + I+ + ++
Sbjct: 304 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKII-----------KHLLV 352
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
E +R +S+ QT +FSAT +
Sbjct: 353 ERRK--------NRENSEGSSKIWQTLIFSATFS-------------------------- 378
Query: 438 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497
+DL +K+ ++ + + + DE ++ ++QH L +I
Sbjct: 379 --------------IDLFDKLSSSRQVKDRRFKNNEDELNA-----VIQH----LMSKIH 415
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
N K P I+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SV
Sbjct: 416 --FNSK-PVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSV 472
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLAT 601
K+LT L L +H+SM Q+ RLK+L+RF+ Q+ +++L+A+
Sbjct: 473 KKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIAS 532
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DVAARGLDIPG++HVIHYH+PR+++IYIHRSGRTARA EG++ ++ E
Sbjct: 533 DVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQE 583
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 26/121 (21%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLEKKVD---------- 1280
D ++HRSGRTARA EG++ ++ E PL + NS+ ++
Sbjct: 557 DIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVSTDLNSRPTNRKPIK 616
Query: 1281 ----LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNWLEKAAKDMDIIIDD 1333
+P PI+ +LS +++R LA E + +I N + DNWL+KAA ++ I +D
Sbjct: 617 WQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNWLKKAADELGIDVDS 674
Query: 1334 E 1334
+
Sbjct: 675 D 675
Score = 46.2 bits (108), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 31/144 (21%)
Query: 1356 ALILAPTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHI 1406
+LI PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I
Sbjct: 242 SLIFTPTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQI 298
Query: 1407 LVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANS 1464
++ATPG +E LE DN L K +D +I DE L+Q
Sbjct: 299 VIATPGRF----------LELLEK-------DNTLIKRFSKVDTLILDEADRLLQDGHFD 341
Query: 1465 RENALMSKALVSKRKELQSLLGKS 1488
++ LV +RK ++ G S
Sbjct: 342 EFEKIIKHLLVERRKNRENSEGSS 365
>gi|256268948|gb|EEU04293.1| Mak5p [Saccharomyces cerevisiae JAY291]
Length = 769
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 177/545 (32%), Positives = 282/545 (51%), Gaps = 106/545 (19%)
Query: 765 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 163 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 221
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
GIPI+ ++ + F +K + K +LI
Sbjct: 222 GIPIVEKLI----------------------------------SNFSQKNK-KPISLIFT 246
Query: 884 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 934
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 247 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 303
Query: 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---------DRVTMTE 985
GR E ++ + + K++ L++DE DR+++ GHF E + I+ +R
Sbjct: 304 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEG 363
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS----IKRLQDLLNIKS-PKI 1040
+S+ QT +FSAT + L + L+ + Q K ++ + I+ L ++ S P I
Sbjct: 364 SSKIWQTLIFSATFSIDLFDKLSSSR-QVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVI 422
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L
Sbjct: 423 IDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNL 482
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLATDVAARGLDIP 1144
+H+SM Q+ RLK+L+RF+ Q+ +++L+A+DVAARGLDIP
Sbjct: 483 GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIP 542
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLE 1197
G++HVIHYH+PR+++IYIHRSGRTARA EG++ ++ E PL + NS+
Sbjct: 543 GVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVS 602
Query: 1198 KKVD--------------LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNW 1240
++ +P PI+ +LS +++R LA E + +I N + DNW
Sbjct: 603 TDLNSRPTNRKPIKWQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNW 660
Query: 1241 LHRSG 1245
L ++
Sbjct: 661 LKKAA 665
Score = 247 bits (631), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 163/531 (30%), Positives = 260/531 (48%), Gaps = 136/531 (25%)
Query: 148 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 163 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 221
Query: 207 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
GIPI+ ++ + F +K + K +LI
Sbjct: 222 GIPIVEKLI----------------------------------SNFSQKNK-KPISLIFT 246
Query: 267 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 317
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 247 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 303
Query: 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
GR E ++ + + K++ L++DE DR+++ GHF E + I+ + ++
Sbjct: 304 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKII-----------KHLLV 352
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
E +R +S+ QT +FSAT +
Sbjct: 353 ERRK--------NRENSEGSSKIWQTLIFSATFS-------------------------- 378
Query: 438 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497
+DL +K+ ++ + + + DE ++ ++QH L +I
Sbjct: 379 --------------IDLFDKLSSSRQVKDRRFKNNEDELNA-----VIQH----LMSKIH 415
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
N K P I+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SV
Sbjct: 416 --FNSK-PVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSV 472
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLAT 601
K+LT L L +H+SM Q+ RLK+L+RF+ Q+ +++L+A+
Sbjct: 473 KKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIAS 532
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DVAARGLDIPG++HVIHYH+PR+++IYIHRSGRTARA EG++ ++ E
Sbjct: 533 DVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQE 583
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 26/121 (21%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLEKKVD---------- 1280
D ++HRSGRTARA EG++ ++ E PL + NS+ ++
Sbjct: 557 DIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVSTDLNSRPTNRKPIK 616
Query: 1281 ----LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNWLEKAAKDMDIIIDD 1333
+P PI+ +LS +++R LA E + +I N + DNWL+KAA ++ I +D
Sbjct: 617 WQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNWLKKAADELGIDVDS 674
Query: 1334 E 1334
+
Sbjct: 675 D 675
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 31/144 (21%)
Query: 1356 ALILAPTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHI 1406
+LI PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I
Sbjct: 242 SLIFTPTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQI 298
Query: 1407 LVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANS 1464
++ATPG +E LE DN L K +D +I DE L+Q
Sbjct: 299 VIATPGRF----------LELLEK-------DNTLIKRFSKVDTLILDEADRLLQDGHFD 341
Query: 1465 RENALMSKALVSKRKELQSLLGKS 1488
++ LV +RK ++ G S
Sbjct: 342 EFEKIIKHLLVERRKNRENSEGSS 365
>gi|160409988|sp|A6ZL85.1|MAK5_YEAS7 RecName: Full=ATP-dependent RNA helicase MAK5; AltName:
Full=Maintenance of killer protein 5
gi|151946532|gb|EDN64754.1| maintenance of killer [Saccharomyces cerevisiae YJM789]
Length = 769
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 177/545 (32%), Positives = 282/545 (51%), Gaps = 106/545 (19%)
Query: 765 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 163 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 221
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
GIPI+ ++ + F +K + K +LI
Sbjct: 222 GIPIVEKLI----------------------------------SNFSQKNK-KPISLIFT 246
Query: 884 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 934
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 247 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 303
Query: 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---------DRVTMTE 985
GR E ++ + + K++ L++DE DR+++ GHF E + I+ +R
Sbjct: 304 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEG 363
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS----IKRLQDLLNIKS-PKI 1040
+S+ QT +FSAT + L + L+ + Q K ++ + I+ L ++ S P I
Sbjct: 364 SSKIWQTLIFSATFSIDLFDKLSSSR-QVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVI 422
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L
Sbjct: 423 IDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNL 482
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLATDVAARGLDIP 1144
+H+SM Q+ RLK+L+RF+ Q+ +++L+A+DVAARGLDIP
Sbjct: 483 GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIP 542
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLE 1197
G++HVIHYH+PR+++IYIHRSGRTARA EG++ ++ E PL + NS+
Sbjct: 543 GVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVS 602
Query: 1198 KKVD--------------LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNW 1240
++ +P PI+ +LS +++R LA E + +I N + DNW
Sbjct: 603 TDLNSRSTNRKPIKWQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNW 660
Query: 1241 LHRSG 1245
L ++
Sbjct: 661 LKKAA 665
Score = 247 bits (631), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 163/531 (30%), Positives = 260/531 (48%), Gaps = 136/531 (25%)
Query: 148 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 163 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 221
Query: 207 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
GIPI+ ++ + F +K + K +LI
Sbjct: 222 GIPIVEKLI----------------------------------SNFSQKNK-KPISLIFT 246
Query: 267 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 317
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 247 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 303
Query: 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
GR E ++ + + K++ L++DE DR+++ GHF E + I+ + ++
Sbjct: 304 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKII-----------KHLLV 352
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
E +R +S+ QT +FSAT +
Sbjct: 353 ERRK--------NRENSEGSSKIWQTLIFSATFS-------------------------- 378
Query: 438 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497
+DL +K+ ++ + + + DE ++ ++QH L +I
Sbjct: 379 --------------IDLFDKLSSSRQVKDRRFKNNEDELNA-----VIQH----LMSKIH 415
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
N K P I+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SV
Sbjct: 416 --FNSK-PVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSV 472
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLAT 601
K+LT L L +H+SM Q+ RLK+L+RF+ Q+ +++L+A+
Sbjct: 473 KKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIAS 532
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DVAARGLDIPG++HVIHYH+PR+++IYIHRSGRTARA EG++ ++ E
Sbjct: 533 DVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQE 583
Score = 46.6 bits (109), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 26/121 (21%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLEKKVD---------- 1280
D ++HRSGRTARA EG++ ++ E PL + NS+ ++
Sbjct: 557 DIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVSTDLNSRSTNRKPIK 616
Query: 1281 ----LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNWLEKAAKDMDIIIDD 1333
+P PI+ +LS +++R LA E + +I N + DNWL+KAA ++ I +D
Sbjct: 617 WQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNWLKKAADELGIDVDS 674
Query: 1334 E 1334
+
Sbjct: 675 D 675
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 31/144 (21%)
Query: 1356 ALILAPTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHI 1406
+LI PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I
Sbjct: 242 SLIFTPTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQI 298
Query: 1407 LVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANS 1464
++ATPG +E LE DN L K +D +I DE L+Q
Sbjct: 299 VIATPGRF----------LELLEK-------DNTLIKRFSKVDTLILDEADRLLQDGHFD 341
Query: 1465 RENALMSKALVSKRKELQSLLGKS 1488
++ LV +RK ++ G S
Sbjct: 342 EFEKIIKHLLVERRKNRENSEGSS 365
>gi|323334595|gb|EGA75969.1| Mak5p [Saccharomyces cerevisiae AWRI796]
Length = 700
Score = 267 bits (683), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 177/545 (32%), Positives = 282/545 (51%), Gaps = 106/545 (19%)
Query: 765 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 163 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 221
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
GIPI+ ++ + F +K + K +LI
Sbjct: 222 GIPIVEKLI----------------------------------SNFSRKNK-KPISLIFT 246
Query: 884 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 934
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 247 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 303
Query: 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---------DRVTMTE 985
GR E ++ + + K++ L++DE DR+++ GHF E + I+ +R
Sbjct: 304 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEG 363
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS----IKRLQDLLNIKS-PKI 1040
+S+ QT +FSAT + L + L+ + Q K ++ + I+ L ++ S P I
Sbjct: 364 SSKIWQTLIFSATFSIDLFDKLSSSR-QVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVI 422
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L
Sbjct: 423 IDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNL 482
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLATDVAARGLDIP 1144
+H+SM Q+ RLK+L+RF+ Q+ +++L+A+DVAARGLDIP
Sbjct: 483 GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIP 542
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLE 1197
G++HVIHYH+PR+++IYIHRSGRTARA EG++ ++ E PL + NS+
Sbjct: 543 GVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVS 602
Query: 1198 KKVD--------------LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNW 1240
++ +P PI+ +LS +++R LA E + +I N + DNW
Sbjct: 603 TDLNSRPTNRKPIKWQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNW 660
Query: 1241 LHRSG 1245
L ++
Sbjct: 661 LKKAA 665
Score = 247 bits (631), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 165/531 (31%), Positives = 261/531 (49%), Gaps = 136/531 (25%)
Query: 148 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 163 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 221
Query: 207 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
GIPI+ ++ + F +K + K +LI
Sbjct: 222 GIPIVEKLI----------------------------------SNFSRKNK-KPISLIFT 246
Query: 267 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 317
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 247 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 303
Query: 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
GR E ++ + + K++ L++DE DR+++ GHF E + I+ + ++
Sbjct: 304 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKII-----------KHLLV 352
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
E KN R +S+ QT +FSAT +
Sbjct: 353 E-----RRKN---RENSEGSSKIWQTLIFSATFS-------------------------- 378
Query: 438 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497
+DL +K+ ++ + + + DE ++ ++QH L +I
Sbjct: 379 --------------IDLFDKLSSSRQVKDRRFKNNEDELNA-----VIQH----LMSKIH 415
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
N K P I+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SV
Sbjct: 416 --FNSK-PVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSV 472
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLAT 601
K+LT L L +H+SM Q+ RLK+L+RF+ Q+ +++L+A+
Sbjct: 473 KKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIAS 532
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DVAARGLDIPG++HVIHYH+PR+++IYIHRSGRTARA EG++ ++ E
Sbjct: 533 DVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQE 583
Score = 46.2 bits (108), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 26/121 (21%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLEKKVD---------- 1280
D ++HRSGRTARA EG++ ++ E PL + NS+ ++
Sbjct: 557 DIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVSTDLNSRPTNRKPIK 616
Query: 1281 ----LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNWLEKAAKDMDIIIDD 1333
+P PI+ +LS +++R LA E + +I N + DNWL+KAA ++ I +D
Sbjct: 617 WQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNWLKKAADELGIDVDS 674
Query: 1334 E 1334
+
Sbjct: 675 D 675
Score = 46.2 bits (108), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 31/144 (21%)
Query: 1356 ALILAPTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHI 1406
+LI PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I
Sbjct: 242 SLIFTPTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQI 298
Query: 1407 LVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANS 1464
++ATPG +E LE DN L K +D +I DE L+Q
Sbjct: 299 VIATPGRF----------LELLEK-------DNTLIKRFSKVDTLILDEADRLLQDGHFD 341
Query: 1465 RENALMSKALVSKRKELQSLLGKS 1488
++ LV +RK ++ G S
Sbjct: 342 EFEKIIKHLLVERRKNRENSEGSS 365
>gi|365766859|gb|EHN08348.1| Mak5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 769
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 177/545 (32%), Positives = 281/545 (51%), Gaps = 106/545 (19%)
Query: 765 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 163 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 221
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
GIPI+ ++ + F K + K +LI
Sbjct: 222 GIPIVEKLI----------------------------------SNFSXKNK-KPISLIFT 246
Query: 884 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 934
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 247 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 303
Query: 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL---------DRVTMTE 985
GR E ++ + + K++ L++DE DR+++ GHF E + I+ +R
Sbjct: 304 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEG 363
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS----IKRLQDLLNIKS-PKI 1040
+S+ QT +FSAT + L + L+ + Q K ++ + I+ L ++ S P I
Sbjct: 364 SSKIWQTLIFSATFSIDLFDKLSSSR-QVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVI 422
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L
Sbjct: 423 IDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNL 482
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLATDVAARGLDIP 1144
+H+SM Q+ RLK+L+RF+ Q+ +++L+A+DVAARGLDIP
Sbjct: 483 GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIP 542
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLE 1197
G++HVIHYH+PR+++IYIHRSGRTARA EG++ ++ E PL + NS+
Sbjct: 543 GVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVS 602
Query: 1198 KKVD--------------LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNW 1240
++ +P PI+ +LS +++R LA E + +I N + DNW
Sbjct: 603 TDLNSRPTNRKPIKWQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNW 660
Query: 1241 LHRSG 1245
L ++
Sbjct: 661 LKKAA 665
Score = 247 bits (630), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 163/531 (30%), Positives = 259/531 (48%), Gaps = 136/531 (25%)
Query: 148 VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+
Sbjct: 163 VNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAY 221
Query: 207 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
GIPI+ ++ + F K + K +LI
Sbjct: 222 GIPIVEKLI----------------------------------SNFSXKNK-KPISLIFT 246
Query: 267 PTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATP 317
PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I++ATP
Sbjct: 247 PTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATP 303
Query: 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
GR E ++ + + K++ L++DE DR+++ GHF E + I+ + ++
Sbjct: 304 GRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKII-----------KHLLV 352
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
E +R +S+ QT +FSAT +
Sbjct: 353 ERRK--------NRENSEGSSKIWQTLIFSATFS-------------------------- 378
Query: 438 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497
+DL +K+ ++ + + + DE ++ ++QH L +I
Sbjct: 379 --------------IDLFDKLSSSRQVKDRRFKNNEDELNA-----VIQH----LMSKIH 415
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
N K P I+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SV
Sbjct: 416 --FNSK-PVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSV 472
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN----------------NSILLAT 601
K+LT L L +H+SM Q+ RLK+L+RF+ Q+ +++L+A+
Sbjct: 473 KKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIAS 532
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DVAARGLDIPG++HVIHYH+PR+++IYIHRSGRTARA EG++ ++ E
Sbjct: 533 DVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQE 583
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 26/121 (21%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLY-----IKMFNSLEKKVD---------- 1280
D ++HRSGRTARA EG++ ++ E PL + NS+ ++
Sbjct: 557 DIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVSTDLNSRPTNRKPIK 616
Query: 1281 ----LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNWLEKAAKDMDIIIDD 1333
+P PI+ +LS +++R LA E + +I N + DNWL+KAA ++ I +D
Sbjct: 617 WQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNWLKKAADELGIDVDS 674
Query: 1334 E 1334
+
Sbjct: 675 D 675
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 31/144 (21%)
Query: 1356 ALILAPTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHI 1406
+LI PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I
Sbjct: 242 SLIFTPTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQI 298
Query: 1407 LVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANS 1464
++ATPG +E LE DN L K +D +I DE L+Q
Sbjct: 299 VIATPGRF----------LELLEK-------DNTLIKRFSKVDTLILDEADRLLQDGHFD 341
Query: 1465 RENALMSKALVSKRKELQSLLGKS 1488
++ LV +RK ++ G S
Sbjct: 342 EFEKIIKHLLVERRKNRENSEGSS 365
>gi|449303441|gb|EMC99448.1| hypothetical protein BAUCODRAFT_29794 [Baudoinia compniacensis UAMH
10762]
Length = 718
Score = 267 bits (682), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 189/545 (34%), Positives = 270/545 (49%), Gaps = 75/545 (13%)
Query: 678 EKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQ 737
E+ +D+ V KL P+ V S + ++ DD+ E D PH L
Sbjct: 37 EEVDDVEVVRDPSSGKLS--YVPNDVRKSSVQDARSNGDDE--DAWEGWDDTPH--HLGN 90
Query: 738 KKKKKQTYTSANKELLEVDTSNN---------EDMFVQMAEWVKFNIPETIIRALYQKGF 788
+K T + K +TS E+ + ++ W + + +L + GF
Sbjct: 91 GRKTASKATPSAKRFKPNETSTAALQVLPDVLENSMIDVSAWRPLKLSPDTLASLARLGF 150
Query: 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848
PT IQ +P AL D+VG A TGSGKTLAFGIPIL
Sbjct: 151 SNPTPIQRAAIPEAL-GGHDVVGKASTGSGKTLAFGIPIL-------------------- 189
Query: 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI---LDAGKYTPV 905
E EL + N K R+ L AL+L+PTRELA Q+ H+ + +
Sbjct: 190 -----ERFLELRSKRNNVPS---KGRHPL-ALLLSPTRELAHQLDKHLRALCSSDYFDGP 240
Query: 906 KVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 965
+A V GG+S KQ R+L K I++ TPGRLWE + G L L +I +L++DE DR+
Sbjct: 241 SIATVTGGLSILKQQRLL-KTADIVIGTPGRLWEVMSSGQGTLDALSRIQFLIVDEADRL 299
Query: 966 IESGHFPELKNILDRVTMTETSQ---------------PRQTFVFSATLTHSLKNSLNLK 1010
+ GH+ E++ ILD + S+ RQT VFSAT L+ L
Sbjct: 300 LSEGHYKEVEEILDALYRRHDSEDDEAAVQADAGDSRPARQTLVFSATFDRGLQKKLG-G 358
Query: 1011 KGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KGQS + + S+ L L + PK +D+ + L E + C EKD Y
Sbjct: 359 KGQSTGNLLGNKE-SLAYLLAKLKFREDKPKFIDVDPLKQLATGLKEGLVSCSGTEKDLY 417
Query: 1069 LYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
LY +L HP RTLVF NSI +V+R+T L L L LH+ M Q+ RL++++RF +
Sbjct: 418 LYALLLLHPNARTLVFTNSIDAVRRITPFLQNLNIQALGLHSGMPQKARLRSVERFTQSS 477
Query: 1128 NS------ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
NS +L+ATDVAARGLDIP ++ V+HYH+PR ++ Y+HRSGRTARA G ++++
Sbjct: 478 NSHKPSASVLVATDVAARGLDIPNVQLVVHYHLPRAADGYVHRSGRTARAGQPGSSIIIC 537
Query: 1182 ESDEI 1186
+E+
Sbjct: 538 GPEEV 542
Score = 210 bits (535), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 168/547 (30%), Positives = 248/547 (45%), Gaps = 110/547 (20%)
Query: 113 PSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFK 172
PS+K+ K +T T+A + L +V E+ + ++ W + + +L + GF
Sbjct: 100 PSAKRFK----PNETSTAALQVLPDV----LENSMIDVSAWRPLKLSPDTLASLARLGFS 151
Query: 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 232
PT IQ +P AL D+VG A TGSGKTLAFGIPIL
Sbjct: 152 NPTPIQRAAIPEAL-GGHDVVGKASTGSGKTLAFGIPIL--------------------- 189
Query: 233 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI---LDAGKYTPVK 289
E EL + N K R+ L AL+L+PTRELA Q+ H+ + +
Sbjct: 190 ----ERFLELRSKRNNVPS---KGRHPL-ALLLSPTRELAHQLDKHLRALCSSDYFDGPS 241
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349
+A V GG+S KQ R+L K I++ TPGRLWE + G L L +I +L++DE DR++
Sbjct: 242 IATVTGGLSILKQQRLL-KTADIVIGTPGRLWEVMSSGQGTLDALSRIQFLIVDEADRLL 300
Query: 350 ESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
GH+ E++ ILD + S+ + +++ ++ RQT VFSAT
Sbjct: 301 SEGHYKEVEEILDALYRRHDSEDDEAAVQA-------------DAGDSRPARQTLVFSAT 347
Query: 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTES 467
L+ L KGQS + + S+ L L + PK +D+ + L E
Sbjct: 348 FDRGLQKKLG-GKGQSTGNLLGNKE-SLAYLLAKLKFREDKPKFIDVDPLKQLATGLKEG 405
Query: 468 KILCKHDEKDSYLYYFILQHP-GRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKIL 526
+ C EKD YLY +L HP RTL T I + +T
Sbjct: 406 LVSCSGTEKDLYLYALLLLHPNARTLV----------------FTNSIDAVRRIT----- 444
Query: 527 CKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+L +Q G S +P A + +R
Sbjct: 445 -------PFLQNLNIQALGLH----------------------SGMPQKARLRSVERFTQ 475
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
+ S+L+ATDVAARGLDIP ++ V+HYH+PR ++ Y+HRSGRTARA G +++
Sbjct: 476 SSNSHKPSASVLVATDVAARGLDIPNVQLVVHYHLPRAADGYVHRSGRTARAGQPGSSII 535
Query: 647 LIESDEI 653
+ +E+
Sbjct: 536 ICGPEEV 542
Score = 45.4 bits (106), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNH---ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+L+PTRELA Q+ H + + + +A V GG+S KQ R+L K I++ TPG
Sbjct: 211 ALLLSPTRELAHQLDKHLRALCSSDYFDGPSIATVTGGLSILKQQRLL-KTADIVIGTPG 269
Query: 1413 AL 1414
L
Sbjct: 270 RL 271
>gi|345560201|gb|EGX43326.1| hypothetical protein AOL_s00215g62 [Arthrobotrys oligospora ATCC
24927]
Length = 801
Score = 266 bits (681), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 195/531 (36%), Positives = 290/531 (54%), Gaps = 66/531 (12%)
Query: 759 NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSG 818
+++D+ V + W ++ ++AL + F PT IQ + +PS ++A D++G A TGSG
Sbjct: 193 SDDDLEVDLPAWESLSLSPYTLQALQKLTFTEPTPIQKLSIPS-IIAGHDLIGKAATGSG 251
Query: 819 KTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY 878
KTLAFGIPI ++ ++ A+ + EE +E A+ K N L
Sbjct: 252 KTLAFGIPIFEHWLSSSKDRAVP----------AKLLSEEDKEADAS------KLTNPLS 295
Query: 879 ALILAPTRELAIQVQNHI----LDAGKYTPVKVACVVGGMSTEKQLRILNKC--PHILVA 932
ALIL+PTRELA Q+ HI +G +P V + GG+S +KQLR L + ++VA
Sbjct: 296 ALILSPTRELAHQITEHIQALITASGVTSPPHVVSLTGGLSIQKQLRKLGQSGGADVVVA 355
Query: 933 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT-------- 984
TPGRLWE + + K +LVIDE DR+++ GHF E++ ILD +T
Sbjct: 356 TPGRLWEILSEKSGYTRWFRKTRFLVIDEADRVLQEGHFKEVEQILDVLTRDAEEEDVAQ 415
Query: 985 -----------ETSQP--RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQ 1030
+ S+P RQ VFSAT + L+ L+ KK S D S+ L
Sbjct: 416 NPEVYGTIKTFKNSKPKDRQMLVFSATFSKDLQQKLSSKKSWKNSNSGLLDDKDSLDYLL 475
Query: 1031 DLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 1088
L + P+ VD+ + + L E + C + EKD YLYY +L++P RTLVF NSIS
Sbjct: 476 KKLPFREEHPQWVDVNPVDQMAENLREGIVECGNMEKDLYLYYLLLRYPLRTLVFTNSIS 535
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF--------RDQN--NSILLATDVAA 1138
+V+RLT L L+ S L+++M Q+ RL++L+RF +D + IL++TDVAA
Sbjct: 536 TVRRLTNLFQNLELSVNGLNSNMIQKARLRSLERFSAPTKPVGKDGKPKHQILISTDVAA 595
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS--- 1195
RGLDI G+E VIHYHVPR ++ Y+HRSGRTAR+ N G +++L DE L IK S
Sbjct: 596 RGLDIKGVELVIHYHVPRAADTYVHRSGRTARSKNSGASIILCAPDE-ALGIKRLISKVH 654
Query: 1196 ----LEKKVDLPDFPIDESVLSLIKKRIDLAKSIE-YLESKIKKNRPDNWL 1241
+ + +D S+++ ++ RI+LA+ I +K + + D+WL
Sbjct: 655 EDRGSKNHAGIKSVFVDRSLVTTLRTRIELAQKISGSTMAKESQRKEDDWL 705
Score = 252 bits (644), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 188/529 (35%), Positives = 276/529 (52%), Gaps = 97/529 (18%)
Query: 142 NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSG 201
+++D+ V + W ++ ++AL + F PT IQ + +PS ++A D++G A TGSG
Sbjct: 193 SDDDLEVDLPAWESLSLSPYTLQALQKLTFTEPTPIQKLSIPS-IIAGHDLIGKAATGSG 251
Query: 202 KTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY 261
KTLAFGIPI ++ ++ A+ + EE +E A+ K N L
Sbjct: 252 KTLAFGIPIFEHWLSSSKDRA----------VPAKLLSEEDKEADAS------KLTNPLS 295
Query: 262 ALILAPTRELAIQVQNH----ILDAGKYTPVKVACVVGGMSTEKQLRILNKC--PHILVA 315
ALIL+PTRELA Q+ H I +G +P V + GG+S +KQLR L + ++VA
Sbjct: 296 ALILSPTRELAHQITEHIQALITASGVTSPPHVVSLTGGLSIQKQLRKLGQSGGADVVVA 355
Query: 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT 375
TPGRLWE + + K +LVIDE DR+++ GHF E++ ILD +T +
Sbjct: 356 TPGRLWEILSEKSGYTRWFRKTRFLVIDEADRVLQEGHFKEVEQILDVLTRDAEEE---- 411
Query: 376 MIESGHFPELKNILDRVTMTETSQP--RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
+ PE + + + S+P RQ VFSAT + L+ L+ KK S
Sbjct: 412 --DVAQNPE---VYGTIKTFKNSKPKDRQMLVFSATFSKDLQQKLSSKKSWKNSN----- 461
Query: 434 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
S +L D+KDS L Y + + P R
Sbjct: 462 ---------------------------------SGLL---DDKDS-LDYLLKKLPFRE-- 482
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 553
+ P+ VD+ + + L E + C + EKD YLYY +L++P RTLVF NS
Sbjct: 483 ---------EHPQWVDVNPVDQMAENLREGIVECGNMEKDLYLYYLLLRYPLRTLVFTNS 533
Query: 554 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF--------RDQ--NNSILLATDV 603
IS+V+RLT L L+ S L+++M Q+ RL++L+RF +D + IL++TDV
Sbjct: 534 ISTVRRLTNLFQNLELSVNGLNSNMIQKARLRSLERFSAPTKPVGKDGKPKHQILISTDV 593
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
AARGLDI G+E VIHYHVPR ++ Y+HRSGRTAR+ N G +++L DE
Sbjct: 594 AARGLDIKGVELVIHYHVPRAADTYVHRSGRTARSKNSGASIILCAPDE 642
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 1356 ALILAPTRELAIQVQNH----ILDAGKYTPVKVACVVGGMSTEKQLRILNKC--PHILVA 1409
ALIL+PTRELA Q+ H I +G +P V + GG+S +KQLR L + ++VA
Sbjct: 296 ALILSPTRELAHQITEHIQALITASGVTSPPHVVSLTGGLSIQKQLRKLGQSGGADVVVA 355
Query: 1410 TPGAL 1414
TPG L
Sbjct: 356 TPGRL 360
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 9/100 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS-------LEKKVDLPDFPIDESV 1290
D ++HRSGRTAR+ N G +++L DE L IK S + + +D S+
Sbjct: 616 DTYVHRSGRTARSKNSGASIILCAPDE-ALGIKRLISKVHEDRGSKNHAGIKSVFVDRSL 674
Query: 1291 LSLIKKRIDLAKSIE-YLESKIKKNRPDNWLEKAAKDMDI 1329
++ ++ RI+LA+ I +K + + D+WL+ AA+D+ +
Sbjct: 675 VTTLRTRIELAQKISGSTMAKESQRKEDDWLKSAAEDLGV 714
>gi|358369372|dbj|GAA85987.1| ATP dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 766
Score = 266 bits (680), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 187/508 (36%), Positives = 271/508 (53%), Gaps = 62/508 (12%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + I+ L + F TPT +Q +P +L D++G A TGSGKTLAFGIPIL
Sbjct: 194 WESLGLSPEILTGLSKMKFTTPTLVQKSCIPQ-ILDGHDVIGKASTGSGKTLAFGIPIL- 251
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LE++ E++ EE KK + ALI++PTRELA
Sbjct: 252 ---------------EHYLEKKREDLRAGKEE---------KKKDSAPIALIMSPTRELA 287
Query: 890 IQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
Q+ HI + + P ++A + GG+S +KQ R+L I++ TPGR+WE + G
Sbjct: 288 HQLAKHIGELALHAPGSSARIALLTGGLSVQKQQRVLAGA-DIVIGTPGRVWEVLSSGQG 346
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNIL---DRV-------------TMTETSQPR 990
+ ++ I +LVIDE DR++ GHF E + IL DRV + R
Sbjct: 347 LIRKMSDIKFLVIDEADRLLSEGHFKEAEEILGALDRVEDGDFGGDDSEDEEKEDARAQR 406
Query: 991 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL-LNIKSPKIVDLTEKIGI 1049
QT VFSAT L+ L K + +S + LQ L + PK +D+ +
Sbjct: 407 QTLVFSATFHRDLQQKLAGKARWTGGDIMSNKESMEYLLQKLKFREEKPKFIDVNPVSQM 466
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
+ L E + C EKD YLY +L +P RTLVF NSIS+V+RLTQLL L L LH
Sbjct: 467 AEGLKEGIVECGAMEKDLYLYTLLLYNPKHRTLVFTNSISAVRRLTQLLQNLGLPALALH 526
Query: 1109 ASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
+SM Q+ RL++++RF + SIL+ATDVAARGLDI GI+ VIHYH PR ++ Y+HRS
Sbjct: 527 SSMAQKARLRSVERFSSPTSNPSSILVATDVAARGLDIKGIDFVIHYHAPRAADTYVHRS 586
Query: 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLE------KKVDLPDFPIDESVLSLIKKRI 1219
GRTARA G ++++ +E+ +++ + KK+ L +D V+ ++ R+
Sbjct: 587 GRTARAGASGKSVIICAPEEMVGVVRLAAKVHANMANGKKLPLESLELDRRVVLRVRDRV 646
Query: 1220 DLAKSIEYLESKIKKNR---PDNWLHRS 1244
+LA I +S I K + DNWL ++
Sbjct: 647 NLAAKI--TDSNIAKEKISAEDNWLQKA 672
Score = 246 bits (629), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 174/508 (34%), Positives = 249/508 (49%), Gaps = 101/508 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + I+ L + F TPT +Q +P +L D++G A TGSGKTLAFGIPIL
Sbjct: 194 WESLGLSPEILTGLSKMKFTTPTLVQKSCIPQ-ILDGHDVIGKASTGSGKTLAFGIPIL- 251
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LE++ E++ EE KK + ALI++PTRELA
Sbjct: 252 ---------------EHYLEKKREDLRAGKEE---------KKKDSAPIALIMSPTRELA 287
Query: 273 IQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
Q+ HI + + P ++A + GG+S +KQ R+L I++ TPGR+WE + G
Sbjct: 288 HQLAKHIGELALHAPGSSARIALLTGGLSVQKQQRVLAGA-DIVIGTPGRVWEVLSSGQG 346
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+ ++ I +LVIDE DR++ GHF E + IL + +E G F +
Sbjct: 347 LIRKMSDIKFLVIDEADRLLSEGHFKEAEEILGALDR----------VEDGDFGGDDSED 396
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
+ RQT VFSAT
Sbjct: 397 EEKEDARAQ--RQTLVFSATFHR------------------------------------- 417
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
DL +K+ T I+ K+S Y L ++++ + PK +D
Sbjct: 418 ---DLQQKLAGKARWTGGDIMSN---KESMEY----------LLQKLK--FREEKPKFID 459
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLK 568
+ + + L E + C EKD YLY +L +P RTLVF NSIS+V+RLTQLL L
Sbjct: 460 VNPVSQMAEGLKEGIVECGAMEKDLYLYTLLLYNPKHRTLVFTNSISAVRRLTQLLQNLG 519
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVIHYHVPRTS 625
L LH+SM Q+ RL++++RF + SIL+ATDVAARGLDI GI+ VIHYH PR +
Sbjct: 520 LPALALHSSMAQKARLRSVERFSSPTSNPSSILVATDVAARGLDIKGIDFVIHYHAPRAA 579
Query: 626 EIYIHRSGRTARANNEGLTVVLIESDEI 653
+ Y+HRSGRTARA G +V++ +E+
Sbjct: 580 DTYVHRSGRTARAGASGKSVIICAPEEM 607
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALI++PTRELA Q+ HI + + P ++A + GG+S +KQ R+L I++ TPG
Sbjct: 277 ALIMSPTRELAHQLAKHIGELALHAPGSSARIALLTGGLSVQKQQRVLAGA-DIVIGTPG 335
Score = 45.4 bits (106), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 1223 KSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE------ 1276
K I+++ D ++HRSGRTARA G ++++ +E+ +++ +
Sbjct: 565 KGIDFVIHYHAPRAADTYVHRSGRTARAGASGKSVIICAPEEMVGVVRLAAKVHANMANG 624
Query: 1277 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWLEKAAKDMDIIIDD 1333
KK+ L +D V+ ++ R++LA I +S I K + DNWL+KAA+D+ + D
Sbjct: 625 KKLPLESLELDRRVVLRVRDRVNLAAKI--TDSNIAKEKISAEDNWLQKAAEDLGVEYDS 682
Query: 1334 ENL 1336
E
Sbjct: 683 EEF 685
>gi|354546640|emb|CCE43372.1| hypothetical protein CPAR2_210170 [Candida parapsilosis]
Length = 800
Score = 265 bits (677), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 193/565 (34%), Positives = 303/565 (53%), Gaps = 64/565 (11%)
Query: 714 DPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKF 773
+PD V+KT+ + ++EP + + + + AN +L D N+ D+ A +
Sbjct: 128 EPD--VSKTDILATEEPSNANDNDELSELKHNVFANLDLPMPD-DNDIDLPQWSANEIGV 184
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
++ + L F PT IQ +P A+ KD+VG A TGSGKTLA+GIPIL
Sbjct: 185 SLSPYTLNGLANLNFTKPTPIQKRTIPIAIEG-KDVVGKATTGSGKTLAYGIPIL----- 238
Query: 834 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
E+ L+ L+ N + + N+ +I PTRELA QV
Sbjct: 239 -------------------EKYLQSLDLVKQNVKD---QKINRPNGIIFTPTRELAHQVV 276
Query: 894 NHILDAGKYTPVKVACVV---GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950
+H+ +Y+P+ V +V GG++ +KQ R+L P I+VATPGR E + +
Sbjct: 277 DHLNKLAQYSPLSVRGIVSVTGGLAIQKQQRLLKMGPGIIVATPGRFLELCENDSELMKR 336
Query: 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR-----QTFVFSATLTHSLKN 1005
+ + +V+DE DR+++ GHF E + IL+ + T QT VFSAT + L
Sbjct: 337 MSLTDIIVLDEADRLLQDGHFEEFEKILELLGKTRPKNKNVDWKWQTLVFSATFSRDLFG 396
Query: 1006 SLN-LKKGQSKSKK-------VSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTE 1055
L+ +K ++K++K + + D I+ L + L+ K P ++D K ++ +TE
Sbjct: 397 KLDKQQKPKAKNQKQQIDGNSLVQNDEIIELLNEKLHFKDKKPVLIDANPKEIVSGQITE 456
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
+ + C E+D YLYYF+L + G TLVF NSI SVKRL LL LK +H+SM Q+Q
Sbjct: 457 ALVECGATERDLYLYYFLLMYKGSTLVFANSIDSVKRLVPLLENLKIPAFAIHSSMEQKQ 516
Query: 1116 RLKNLDRFR----DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
RL++L+RF+ ++L+A+DVAARGLDIP I+HV HYH+PR++++YIHRSGRTARA
Sbjct: 517 RLRSLERFKAALEKNETAVLVASDVAARGLDIPKIDHVAHYHLPRSADVYIHRSGRTARA 576
Query: 1172 NNEGLTLVLIESDEI--PLY----IKMFNSLEKKV----DLPDFPIDESVLSLIKKRIDL 1221
EG++++ E PL I N+ KK+ D+ PI+ ++ ++ R++L
Sbjct: 577 GREGVSVMFCSPQEASGPLRKLRKIVASNASNKKLSTHNDVKLLPIEMDLVGQLRPRVEL 636
Query: 1222 AKSIEYLE-SKIKKNRPDNWLHRSG 1245
A + S + D+W+ ++
Sbjct: 637 AGKLADARISSTATRKEDSWVKQAA 661
Score = 243 bits (621), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 184/565 (32%), Positives = 281/565 (49%), Gaps = 111/565 (19%)
Query: 97 DPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKF 156
+PD V+KT+ + ++EPS+ + + + AN +L D N+ D+ A +
Sbjct: 128 EPD--VSKTDILATEEPSNANDNDELSELKHNVFANLDLPMPD-DNDIDLPQWSANEIGV 184
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
++ + L F PT IQ +P A+ KD+VG A TGSGKTLA+GIPIL
Sbjct: 185 SLSPYTLNGLANLNFTKPTPIQKRTIPIAIEG-KDVVGKATTGSGKTLAYGIPIL----- 238
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
E+ L+ L+ N + + N+ +I PTRELA QV
Sbjct: 239 -------------------EKYLQSLDLVKQNVKD---QKINRPNGIIFTPTRELAHQVV 276
Query: 277 NHILDAGKYTPVKVACVV---GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333
+H+ +Y+P+ V +V GG++ +KQ R+L P I+VATPGR E + +
Sbjct: 277 DHLNKLAQYSPLSVRGIVSVTGGLAIQKQQRLLKMGPGIIVATPGRFLELCENDSELMKR 336
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
+ + +V+DE DR+++ GHF E + IL+ + T P+ KN+
Sbjct: 337 MSLTDIIVLDEADRLLQDGHFEEFEKILELLGKTR--------------PKNKNV----- 377
Query: 394 MTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVD 453
QT VFSAT + L L+ ++ PK +
Sbjct: 378 ----DWKWQTLVFSATFSRDLFGKLDKQQ-------------------------KPKAKN 408
Query: 454 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS--PKIVDLT 511
++I + L ++DE + E + + L+ K P ++D
Sbjct: 409 QKQQI-------DGNSLVQNDE----------------IIELLNEKLHFKDKKPVLIDAN 445
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
K ++ +TE+ + C E+D YLYYF+L + G TLVF NSI SVKRL LL LK
Sbjct: 446 PKEIVSGQITEALVECGATERDLYLYYFLLMYKGSTLVFANSIDSVKRLVPLLENLKIPA 505
Query: 572 LPLHASMNQRQRLKNLDRFR----DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+H+SM Q+QRL++L+RF+ ++L+A+DVAARGLDIP I+HV HYH+PR++++
Sbjct: 506 FAIHSSMEQKQRLRSLERFKAALEKNETAVLVASDVAARGLDIPKIDHVAHYHLPRSADV 565
Query: 628 YIHRSGRTARANNEGLTVVLIESDE 652
YIHRSGRTARA EG++V+ E
Sbjct: 566 YIHRSGRTARAGREGVSVMFCSPQE 590
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 21/99 (21%)
Query: 1320 LEKAAKDMDII---IDDENLIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDA 1376
LEK + +D++ + D+ + +PN +I PTRELA QV +H+
Sbjct: 238 LEKYLQSLDLVKQNVKDQKINRPN---------------GIIFTPTRELAHQVVDHLNKL 282
Query: 1377 GKYTPVKVACVV---GGMSTEKQLRILNKCPHILVATPG 1412
+Y+P+ V +V GG++ +KQ R+L P I+VATPG
Sbjct: 283 AQYSPLSVRGIVSVTGGLAIQKQQRLLKMGPGIIVATPG 321
>gi|346327471|gb|EGX97067.1| ATP dependent RNA helicase, putative [Cordyceps militaris CM01]
Length = 852
Score = 263 bits (671), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 194/583 (33%), Positives = 289/583 (49%), Gaps = 99/583 (16%)
Query: 731 HSKKLKQ------KKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALY 784
H +KL+ KK+K + L++ NE + +WV N+ I+ A+
Sbjct: 190 HDRKLEAAAADTIKKQKGGAQVNPFDVLMDAQDDENE---ANLEDWVALNLSPAIVSAIG 246
Query: 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844
+ GF +PT IQ+ +P + A D++G A+TGSGKTLAFGIPI+
Sbjct: 247 KLGFTSPTAIQAESIPP-INAGADVIGKAQTGSGKTLAFGIPIV---------------- 289
Query: 845 DSGLEEEAEEVLEELEEESANTTEFV-KKTRNKLYALILAPTRELAIQVQNHI--LDAGK 901
+ LE A++ + E+ E +R A+IL+PTRELA Q+ +H+ L AG
Sbjct: 290 ERWLELHADKDGTDDEDGDEEEAEQDGASSRKGPTAVILSPTRELAKQIGDHLRALCAGL 349
Query: 902 YTPVKVACVV-GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK--INYLV 958
CVV GG+S KQ R L + ++V TPGRLWE + G L ++ + +LV
Sbjct: 350 PAASPRVCVVTGGLSVHKQQRQL-RTADVVVGTPGRLWEVLD-GDAALQAAFRSRLRFLV 407
Query: 959 IDETDRMIESGHFPELKNI---LDR----------------VTMTETSQPRQTFVFSATL 999
+DE DR+ + G F E + I LDR E S RQT VFSAT
Sbjct: 408 VDEADRLFKVGQFKEAELIIGALDRRAGGSESDDEEDEEEVDEGDEGSWSRQTLVFSATF 467
Query: 1000 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI----KSPKIVDLTEKIGITKTLTE 1055
L+ L KK + S +++ DL+ P +D+ + + L E
Sbjct: 468 DKDLQMKLAGKK------RPSAQGTDEEKMADLMRCLKFRGQPTFIDVNPVSQMAEGLRE 521
Query: 1056 SKILCKHDEK--------------------DSYLYYFILQHPGR-TLVFCNSISSVKRLT 1094
I C EK D YLY +L +PGR TLVF NSI++V+R+
Sbjct: 522 GLIECGAMEKVSPSQNCAPIASSSILTLLQDLYLYSVLLLNPGRRTLVFANSIAAVRRVA 581
Query: 1095 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154
L L + PLH+ M Q+ RL++L+RF NS+L+ATDVAARGLDI ++ V+HYHV
Sbjct: 582 PFLQNLNITAQPLHSQMAQKARLRSLERFTATRNSVLVATDVAARGLDINEVDLVVHYHV 641
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD------------- 1201
PRT++ Y+HRSGRTAR G++++L DE+ ++ + + + D
Sbjct: 642 PRTADAYVHRSGRTARGTRVGVSVMLCAPDEVLPTRRLASKVHARRDARYGGGSSSKREH 701
Query: 1202 -LPDFPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLH 1242
+ P+D+ V + +K R D+AK + + + +K K + D WL
Sbjct: 702 MIETLPLDKKVAARLKPRADMAKKLADAVLAKEKAHSEDTWLR 744
Score = 244 bits (623), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 186/547 (34%), Positives = 266/547 (48%), Gaps = 90/547 (16%)
Query: 121 KKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSM 180
KK+K + L++ NE + +WV N+ I+ A+ + GF +PT IQ+
Sbjct: 203 KKQKGGAQVNPFDVLMDAQDDENE---ANLEDWVALNLSPAIVSAIGKLGFTSPTAIQAE 259
Query: 181 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 240
+P + A D++G A+TGSGKTLAFGIPI+ + LE A++
Sbjct: 260 SIPP-INAGADVIGKAQTGSGKTLAFGIPIV----------------ERWLELHADKDGT 302
Query: 241 ELEEESANTTEFV-KKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVV-GG 296
+ E+ E +R A+IL+PTRELA Q+ +H+ L AG CVV GG
Sbjct: 303 DDEDGDEEEAEQDGASSRKGPTAVILSPTRELAKQIGDHLRALCAGLPAASPRVCVVTGG 362
Query: 297 MSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY--KINYLVIDETDRMIESGHF 354
+S KQ R L + ++V TPGRLWE + G L + ++ +LV+DE DR+ + G F
Sbjct: 363 LSVHKQQRQL-RTADVVVGTPGRLWEVLD-GDAALQAAFRSRLRFLVVDEADRLFKVGQF 420
Query: 355 PELKNI---LDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
E + I LDR S + E E S RQT VFSAT
Sbjct: 421 KEAELIIGALDRRAGGSESDDEEDEEEV------------DEGDEGSWSRQTLVFSATFD 468
Query: 412 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI----KSPKIVDLTEKIGITKTLTES 467
L+ L K K+ S +++ DL+ P +D+ + + L E
Sbjct: 469 KDLQMKLAGK------KRPSAQGTDEEKMADLMRCLKFRGQPTFIDVNPVSQMAEGLREG 522
Query: 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC 527
I C EK S Q+ I S I+ L +
Sbjct: 523 LIECGAMEKVS----------------PSQNCAPIASSSILTLLQ--------------- 551
Query: 528 KHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
D YLY +L +PG RTLVF NSI++V+R+ L L + PLH+ M Q+ RL++
Sbjct: 552 -----DLYLYSVLLLNPGRRTLVFANSIAAVRRVAPFLQNLNITAQPLHSQMAQKARLRS 606
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
L+RF NS+L+ATDVAARGLDI ++ V+HYHVPRT++ Y+HRSGRTAR G++V+
Sbjct: 607 LERFTATRNSVLVATDVAARGLDINEVDLVVHYHVPRTADAYVHRSGRTARGTRVGVSVM 666
Query: 647 LIESDEI 653
L DE+
Sbjct: 667 LCAPDEV 673
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 15/114 (13%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD--------------LPD 1283
D ++HRSGRTAR G++++L DE+ ++ + + + D +
Sbjct: 646 DAYVHRSGRTARGTRVGVSVMLCAPDEVLPTRRLASKVHARRDARYGGGSSSKREHMIET 705
Query: 1284 FPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
P+D+ V + +K R D+AK + + + +K K + D WL AA ++ + D E
Sbjct: 706 LPLDKKVAARLKPRADMAKKLADAVLAKEKAHSEDTWLRGAADELGVEYDSEEF 759
Score = 45.4 bits (106), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVV-GGMSTEKQLRILNKCPHILVATPG 1412
A+IL+PTRELA Q+ +H+ L AG CVV GG+S KQ R L + ++V TPG
Sbjct: 325 AVILSPTRELAKQIGDHLRALCAGLPAASPRVCVVTGGLSVHKQQRQL-RTADVVVGTPG 383
Query: 1413 AL 1414
L
Sbjct: 384 RL 385
>gi|344232121|gb|EGV64000.1| P-loop containing nucleoside triphosphate hydrolase protein [Candida
tenuis ATCC 10573]
Length = 809
Score = 262 bits (670), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 179/509 (35%), Positives = 267/509 (52%), Gaps = 54/509 (10%)
Query: 743 QTYTSANKELLEVDTSNN---EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVM 799
QT ++EL++ N D + + W ++ + L + F +PT IQ +
Sbjct: 139 QTANELDEELVQSAFDFNVELPDDNISLPHWSSLSLSGYALTGLNELKFTSPTPIQKKSI 198
Query: 800 PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 859
P L R DI+G A TGSGKTLA+GIPIL E+ L L
Sbjct: 199 PLGLEGR-DIIGKATTGSGKTLAYGIPIL------------------------EKYLSNL 233
Query: 860 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV---KVACVVGGMST 916
E AN + N ++ PTRELA QV +H+ + K+ P+ + + GG+S
Sbjct: 234 ETIKANRKNGII---NSPTGIVFVPTRELAHQVVDHLNNISKFYPLPPNGIVSITGGLSI 290
Query: 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 976
+KQ R+L P ++VATPGR E + L + +V+DE DR+++ GHF E +
Sbjct: 291 QKQERLLKFGPGLIVATPGRFLELSEKDEELLKRWSSTDIVVLDEADRLLQDGHFDEFEK 350
Query: 977 ILDRVTMTE----TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL 1032
IL+ + QT VFSAT L L+ + + D +K L +
Sbjct: 351 ILELFKKHRPGNLATWKWQTLVFSATFARELFGKLSKTVKAKDQTGLIENDEILKLLNEK 410
Query: 1033 LNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 1090
L+ K SP ++D K ++ + E+ + C E+D YLYYF+L + G TLVF NSI SV
Sbjct: 411 LHFKDKSPVLIDANPKEIVSGQIAEALVECGATERDLYLYYFLLVYKGSTLVFANSIDSV 470
Query: 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN----SILLATDVAARGLDIPGI 1146
KRL L L +H+SM Q+QR+++L+RF++ S+L+A+DVAARGLDIP I
Sbjct: 471 KRLVPFLNSLNIPAFAIHSSMIQKQRMRSLERFKEATAKNSISVLVASDVAARGLDIPNI 530
Query: 1147 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI--PL--YIKMFNS------L 1196
+HV HYH+PR++++YIHRSGRTARA NEG++++ E PL K+ S L
Sbjct: 531 DHVAHYHLPRSADVYIHRSGRTARAGNEGVSVMFCSPQEASGPLRKLRKLVASNATHTRL 590
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
D+ PI+E+++S ++ R+ LA +
Sbjct: 591 NVHSDVKLLPIEENLVSQVRPRVMLASKL 619
Score = 209 bits (532), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 165/539 (30%), Positives = 246/539 (45%), Gaps = 120/539 (22%)
Query: 126 QTYTSANKELLEVDTSNN---EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVM 182
QT ++EL++ N D + + W ++ + L + F +PT IQ +
Sbjct: 139 QTANELDEELVQSAFDFNVELPDDNISLPHWSSLSLSGYALTGLNELKFTSPTPIQKKSI 198
Query: 183 PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 242
P L R DI+G A TGSGKTLA+GIPIL E+ L L
Sbjct: 199 PLGLEGR-DIIGKATTGSGKTLAYGIPIL------------------------EKYLSNL 233
Query: 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV---KVACVVGGMST 299
E AN + N ++ PTRELA QV +H+ + K+ P+ + + GG+S
Sbjct: 234 ETIKANRKNGII---NSPTGIVFVPTRELAHQVVDHLNNISKFYPLPPNGIVSITGGLSI 290
Query: 300 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 359
+KQ R+L P ++VATPGR E + L + +V+DE DR+++ GHF E +
Sbjct: 291 QKQERLLKFGPGLIVATPGRFLELSEKDEELLKRWSSTDIVVLDEADRLLQDGHFDEFEK 350
Query: 360 ILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419
IL+ + + +P G+ K QT VFSAT L L+
Sbjct: 351 ILE---LFKKHRP-------GNLATWK--------------WQTLVFSATFARELFGKLS 386
Query: 420 LKKGQSKSKKVSKGDPSIKRLQDLLNI--KSPKIVDLTEKIGITKTLTESKILCKHDEKD 477
+ + D +K L + L+ KSP ++D K ++ + E+ + C E+D
Sbjct: 387 KTVKAKDQTGLIENDEILKLLNEKLHFKDKSPVLIDANPKEIVSGQIAEALVECGATERD 446
Query: 478 SYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 537
YLYYF+L + G TL I K
Sbjct: 447 LYLYYFLLVYKGSTLV----------------FANSIDSVK------------------- 471
Query: 538 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN-- 595
R + F NS L +H+SM Q+QR+++L+RF++
Sbjct: 472 --------RLVPFLNS-------------LNIPAFAIHSSMIQKQRMRSLERFKEATAKN 510
Query: 596 --SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
S+L+A+DVAARGLDIP I+HV HYH+PR++++YIHRSGRTARA NEG++V+ E
Sbjct: 511 SISVLVASDVAARGLDIPNIDHVAHYHLPRSADVYIHRSGRTARAGNEGVSVMFCSPQE 569
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPV---KVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ PTRELA QV +H+ + K+ P+ + + GG+S +KQ R+L P ++VATPG
Sbjct: 250 GIVFVPTRELAHQVVDHLNNISKFYPLPPNGIVSITGGLSIQKQERLLKFGPGLIVATPG 309
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 32/173 (18%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PL--YIKMFNS------LEKKVDLPDFPID 1287
D ++HRSGRTARA NEG++++ E PL K+ S L D+ PI+
Sbjct: 543 DVYIHRSGRTARAGNEGVSVMFCSPQEASGPLRKLRKLVASNATHTRLNVHSDVKLLPIE 602
Query: 1288 ESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDI----IIDD--ENLIQPN 1340
E+++S ++ R+ LA + S + + W+++AA+D+ I IDD ++ I+
Sbjct: 603 ENLVSQVRPRVMLASKLANAAISNTSSKKENTWVKQAAEDLGIEDMTNIDDFQDDFIKKQ 662
Query: 1341 Q-------LLIFESRNLRYSWDALILAPTRELA--------IQVQNHILDAGK 1378
+ L ES+ +RY L+ P R+LA ++ HI+ +GK
Sbjct: 663 KKRNESRALTKDESKGIRYELKQLLSQPLRKLARRSYLTSGLENLAHIMVSGK 715
>gi|171682200|ref|XP_001906043.1| hypothetical protein [Podospora anserina S mat+]
gi|170941059|emb|CAP66709.1| unnamed protein product [Podospora anserina S mat+]
Length = 761
Score = 262 bits (670), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 180/522 (34%), Positives = 265/522 (50%), Gaps = 82/522 (15%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V +EW + ++ A+ F PT IQ+ +P ++ D++G A TGSGKTLAFG
Sbjct: 184 VDTSEWAPLELSPDLVAAIGNLRFGKPTPIQARAIPE-IINGHDVIGKASTGSGKTLAFG 242
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPI +E+ A E + + A+IL+P
Sbjct: 243 IPI-------------------------------VEKWLAKQAEGNEDEKKHPIAMILSP 271
Query: 885 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942
TRELA Q+ +H+ L G + V GG++ +KQLR L K I++ TPGRLWE I
Sbjct: 272 TRELAHQISDHLKKLSDGLTESPYICSVTGGLAIQKQLRQLEKA-DIIIGTPGRLWEVIS 330
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNI---LDRVTMTETSQP---------- 989
+ + +I++LV+DE DR+++ G F E ++I LDR E ++
Sbjct: 331 TEIAVMNSIRQIDFLVVDEADRLLKDGQFKEAEDIIKALDRTRPGEEAEEDSDSDEEPTP 390
Query: 990 ---RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLT 1044
RQT VFSAT +L+ L G+++ + + + S++ L LN + PK +D
Sbjct: 391 KHNRQTLVFSATFNKALQQKL---AGKARYNLMGEAE-SLEHLLKKLNFREAKPKFIDAN 446
Query: 1045 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCS 1103
+ L E I C EKD YLY +L P R LVF N+I++V+RLT L L
Sbjct: 447 PVSQMADKLKEGLIHCGDLEKDLYLYAVLLLQPTRRALVFTNAINTVRRLTPFLQNLGLP 506
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQ-----------NNSILLATDVAARGLDIPGIEHVIHY 1152
+ LH+ M Q+ RL++L++F+ IL+ATDVAARGLDIP ++ VIHY
Sbjct: 507 AISLHSDMEQKARLRSLEKFKADPPKNANPGSSVQAPILVATDVAARGLDIPNVDLVIHY 566
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLIESDE-IP---LYIKMFNSLEKKVDLPD---- 1204
HVPR+++ Y+HRSGRTARA G++++L E IP L K+ S P
Sbjct: 567 HVPRSADDYVHRSGRTARATQSGVSIMLCGPKEDIPTQRLITKVHASTAASSGKPKKDLL 626
Query: 1205 ----FPIDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWL 1241
ID ++S +K R+ L+K I E +K K + D+WL
Sbjct: 627 GVQTIDIDRRLVSHLKPRVTLSKKITETTIAKEKGAKEDDWL 668
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 154/515 (29%), Positives = 233/515 (45%), Gaps = 119/515 (23%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V +EW + ++ A+ F PT IQ+ +P ++ D++G A TGSGKTLAFG
Sbjct: 184 VDTSEWAPLELSPDLVAAIGNLRFGKPTPIQARAIPE-IINGHDVIGKASTGSGKTLAFG 242
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IPI +E+ A E + + A+IL+P
Sbjct: 243 IPI-------------------------------VEKWLAKQAEGNEDEKKHPIAMILSP 271
Query: 268 TRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 325
TRELA Q+ +H+ L G + V GG++ +KQLR L K I++ TPGRLWE I
Sbjct: 272 TRELAHQISDHLKKLSDGLTESPYICSVTGGLAIQKQLRQLEKA-DIIIGTPGRLWEVIS 330
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385
+ + +I++LV+DE DR+++ G F E ++I+ + T + + +S P
Sbjct: 331 TEIAVMNSIRQIDFLVVDEADRLLKDGQFKEAEDIIKALDRTRPGEEAEEDSDSDEEPTP 390
Query: 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 445
K+ RQT VFSAT +L+ L G+++ + + + S++ L LN
Sbjct: 391 KH------------NRQTLVFSATFNKALQQKL---AGKARYNLMGEAE-SLEHLLKKLN 434
Query: 446 IKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
+ PK +D + L E I C EKD YLY +L P R
Sbjct: 435 FREAKPKFIDANPVSQMADKLKEGLIHCGDLEKDLYLYAVLLLQPTR------------- 481
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
+ + T I + LT
Sbjct: 482 --RALVFTNAINTVRRLT----------------------------------------PF 499
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-----------NNSILLATDVAARGLDIPG 612
L L + LH+ M Q+ RL++L++F+ IL+ATDVAARGLDIP
Sbjct: 500 LQNLGLPAISLHSDMEQKARLRSLEKFKADPPKNANPGSSVQAPILVATDVAARGLDIPN 559
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
++ VIHYHVPR+++ Y+HRSGRTARA G++++L
Sbjct: 560 VDLVIHYHVPRSADDYVHRSGRTARATQSGVSIML 594
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDE-IP---LYIKMFNSLEKKVDLPD--------FP 1285
D+++HRSGRTARA G++++L E IP L K+ S P
Sbjct: 573 DDYVHRSGRTARATQSGVSIMLCGPKEDIPTQRLITKVHASTAASSGKPKKDLLGVQTID 632
Query: 1286 IDESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
ID ++S +K R+ L+K I E +K K + D+WL+ AA+++ I +D++
Sbjct: 633 IDRRLVSHLKPRVTLSKKITETTIAKEKGAKEDDWLKNAAEELGIELDEDEF 684
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
A+IL+PTRELA Q+ +H+ L G + V GG++ +KQLR L K I++ TPG
Sbjct: 266 AMILSPTRELAHQISDHLKKLSDGLTESPYICSVTGGLAIQKQLRQLEKA-DIIIGTPGR 324
Query: 1414 L 1414
L
Sbjct: 325 L 325
>gi|323356090|gb|EGA87895.1| Mak5p [Saccharomyces cerevisiae VL3]
Length = 526
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 174/531 (32%), Positives = 277/531 (52%), Gaps = 105/531 (19%)
Query: 778 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 837
TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+GIPI+ ++
Sbjct: 2 TILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAYGIPIVEKLI----- 55
Query: 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH-- 895
+ F +K + K +LI PTRELA QV +H
Sbjct: 56 -----------------------------SNFSQKNK-KPISLIFTPTRELAHQVTDHLK 85
Query: 896 -----ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHL 948
+L +Y+ + + GG+S +KQ R+L + I++ATPGR E ++ + +
Sbjct: 86 KICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLI 142
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNIL---------DRVTMTETSQPRQTFVFSATL 999
K++ L++DE DR+++ GHF E + I+ +R +S+ QT +FSAT
Sbjct: 143 KRFSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTLIFSATF 202
Query: 1000 THSLKNSLNLKKGQSKSKKVSKG----DPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLT 1054
+ L + L+ + Q K ++ + I+ L ++ S P I+D + ++ +
Sbjct: 203 SIDLFDKLSSSR-QVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIK 261
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L +H+SM Q+
Sbjct: 262 ESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNLGIPAFQIHSSMTQK 321
Query: 1115 QRLKNLDRFRDQN----------------NSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158
RLK+L+RF+ Q+ +++L+A+DVAARGLDIPG++HVIHYH+PR++
Sbjct: 322 NRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQHVIHYHLPRST 381
Query: 1159 EIYIHRSGRTARANNEGLTLVLIESDEI--PL-----YIKMFNSLEKKVD---------- 1201
+IYIHRSGRTARA EG++ ++ E PL + NS+ ++
Sbjct: 382 DIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVSTDLNSRPTNRKPIK 441
Query: 1202 ----LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNWLHRSG 1245
+P PI+ +LS +++R LA E + +I N + DNWL ++
Sbjct: 442 WQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNWLKKAA 490
Score = 240 bits (613), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 160/517 (30%), Positives = 255/517 (49%), Gaps = 135/517 (26%)
Query: 161 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 220
TI+++L F PT+IQ +P ++ D++G A TGSGKTLA+GIPI+ ++
Sbjct: 2 TILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTLAYGIPIVEKLI----- 55
Query: 221 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH-- 278
+ F +K + K +LI PTRELA QV +H
Sbjct: 56 -----------------------------SNFSQKNK-KPISLIFTPTRELAHQVTDHLK 85
Query: 279 -----ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHL 331
+L +Y+ + + GG+S +KQ R+L + I++ATPGR E ++ + +
Sbjct: 86 KICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLI 142
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
K++ L++DE DR+++ GHF E + I+ + ++E +R
Sbjct: 143 KRFSKVDTLILDEADRLLQDGHFDEFEKII-----------KHLLVERRK--------NR 183
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
+S+ QT +FSAT +
Sbjct: 184 ENSEGSSKIWQTLIFSATFS---------------------------------------- 203
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
+DL +K+ ++ + + + DE ++ ++QH L +I N K P I+D
Sbjct: 204 IDLFDKLSSSRQVKDRRFKNNEDELNA-----VIQH----LMSKIH--FNSK-PVIIDTN 251
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+ ++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L
Sbjct: 252 PESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNLGIPA 311
Query: 572 LPLHASMNQRQRLKNLDRFRDQN----------------NSILLATDVAARGLDIPGIEH 615
+H+SM Q+ RLK+L+RF+ Q+ +++L+A+DVAARGLDIPG++H
Sbjct: 312 FQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQH 371
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
VIHYH+PR+++IYIHRSGRTARA EG++ ++ E
Sbjct: 372 VIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQE 408
Score = 47.0 bits (110), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 26/121 (21%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PL-----YIKMFNSLEKKVD---------- 1280
D ++HRSGRTARA EG++ ++ E PL + NS+ ++
Sbjct: 382 DIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLATKNSVSTDLNSRPTNRKPIK 441
Query: 1281 ----LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNWLEKAAKDMDIIIDD 1333
+P PI+ +LS +++R LA E + +I N + DNWL+KAA ++ I +D
Sbjct: 442 WQNTVPLLPIETDILSQLRERSRLAG--ELADHEIASNSLRKDDNWLKKAADELGIDVDS 499
Query: 1334 E 1334
+
Sbjct: 500 D 500
Score = 45.8 bits (107), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 31/144 (21%)
Query: 1356 ALILAPTRELAIQVQNH-------ILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHI 1406
+LI PTRELA QV +H +L +Y+ + + GG+S +KQ R+L + I
Sbjct: 67 SLIFTPTRELAHQVTDHLKKICEPVLAKSQYS---ILSLTGGLSIQKQQRLLKYDNSGQI 123
Query: 1407 LVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANS 1464
++ATPG + +E LE DN L K +D +I DE L+Q
Sbjct: 124 VIATPG----------RFLELLEK-------DNTLIKRFSKVDTLILDEADRLLQDGHFD 166
Query: 1465 RENALMSKALVSKRKELQSLLGKS 1488
++ LV +RK ++ G S
Sbjct: 167 EFEKIIKHLLVERRKNRENSEGSS 190
>gi|320592957|gb|EFX05366.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 855
Score = 259 bits (663), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 170/451 (37%), Positives = 244/451 (54%), Gaps = 49/451 (10%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
++ WV +I ++ L + F P+ IQ+ +P +LA D++G A TGSGKTLAF IP
Sbjct: 185 VSAWVPLDIVPPLLSCLARLKFSKPSAIQAATIPE-ILAGHDVIGKASTGSGKTLAFAIP 243
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
I+ + + G E ++ E ++ A+ K+ + AL+L+PT
Sbjct: 244 IVQRWLAE------------GGAERRQKKTEADGDKDADGDTPKKRPVCRPTALVLSPTG 291
Query: 887 ELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
ELA Q+ HI + P V V GG+S KQ R L K I+V TPGRLWE +
Sbjct: 292 ELAHQITTHIKELCAALPSYPYVCAVTGGLSVFKQQRQLEKA-DIVVGTPGRLWEVLSTS 350
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ---------------- 988
L I++LV+DE DR++ GHF E + IL+ + TE +
Sbjct: 351 KPLLEAFRSIDFLVVDEADRLLSDGHFKEAEEILEALDRTEVDEGEGKGEDEAEDENEAE 410
Query: 989 -------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK--SPK 1039
PRQT VFSAT L+ L G+S+ + + S+ L LN + SP+
Sbjct: 411 LETPPPKPRQTLVFSATFNRGLQQKL---AGKSRYDLMDQKQ-SMDHLMKRLNFREESPQ 466
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLT 1098
+D+ + + L E + C EKD YLY +L P R TLVF NSIS+V+RL LL
Sbjct: 467 FIDVNPVSQMAERLREGMVECGAMEKDLYLYSLLLLQPTRRTLVFANSISTVRRLAPLLQ 526
Query: 1099 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGIEHVIHYHVP 1155
L + LH+ M Q+ RL+ ++RF+ S +L+ATDVAARGLDIPGI+ VIHYHVP
Sbjct: 527 NLNLPAIALHSQMPQKARLRAVERFKAAQGSRGAVLIATDVAARGLDIPGIDVVIHYHVP 586
Query: 1156 RTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
R+++ Y+HRSGRTARA + GL+++L +E+
Sbjct: 587 RSADNYVHRSGRTARAASAGLSILLCGPEEV 617
Score = 141 bits (356), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/345 (32%), Positives = 169/345 (48%), Gaps = 27/345 (7%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
++ WV +I ++ L + F P+ IQ+ +P +LA D++G A TGSGKTLAF IP
Sbjct: 185 VSAWVPLDIVPPLLSCLARLKFSKPSAIQAATIPE-ILAGHDVIGKASTGSGKTLAFAIP 243
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
I+ + + G E ++ E ++ A+ K+ + AL+L+PT
Sbjct: 244 IVQRWLAE------------GGAERRQKKTEADGDKDADGDTPKKRPVCRPTALVLSPTG 291
Query: 270 ELAIQVQNHILDAGKYTPVK--VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
ELA Q+ HI + P V V GG+S KQ R L K I+V TPGRLWE +
Sbjct: 292 ELAHQITTHIKELCAALPSYPYVCAVTGGLSVFKQQRQLEKA-DIVVGTPGRLWEVLSTS 350
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
L I++LV+DE DR++ GHF E + IL+ + TE + E E ++
Sbjct: 351 KPLLEAFRSIDFLVVDEADRLLSDGHFKEAEEILEALDRTEVDEG-----EGKGEDEAED 405
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
+ T +PRQT VFSAT L+ L G+S+ + + S+ L LN +
Sbjct: 406 ENEAELETPPPKPRQTLVFSATFNRGLQQKL---AGKSRYDLMDQKQ-SMDHLMKRLNFR 461
Query: 448 --SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
SP+ +D+ + + L E + C EKD YLY +L P R
Sbjct: 462 EESPQFIDVNPVSQMAERLREGMVECGAMEKDLYLYSLLLLQPTR 506
Score = 141 bits (356), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 107/160 (66%), Gaps = 6/160 (3%)
Query: 500 LNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISS 556
LN + SP+ +D+ + + L E + C EKD YLY +L P R TLVF NSIS+
Sbjct: 458 LNFREESPQFIDVNPVSQMAERLREGMVECGAMEKDLYLYSLLLLQPTRRTLVFANSIST 517
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGI 613
V+RL LL L + LH+ M Q+ RL+ ++RF+ S +L+ATDVAARGLDIPGI
Sbjct: 518 VRRLAPLLQNLNLPAIALHSQMPQKARLRAVERFKAAQGSRGAVLIATDVAARGLDIPGI 577
Query: 614 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+ VIHYHVPR+++ Y+HRSGRTARA + GL+++L +E+
Sbjct: 578 DVVIHYHVPRSADNYVHRSGRTARAASAGLSILLCGPEEV 617
Score = 43.9 bits (102), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPV--KVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
AL+L+PT ELA Q+ HI + P V V GG+S KQ R L K I+V TPG
Sbjct: 284 ALVLSPTGELAHQITTHIKELCAALPSYPYVCAVTGGLSVFKQQRQLEKA-DIVVGTPGR 342
Query: 1414 L 1414
L
Sbjct: 343 L 343
>gi|50284995|ref|XP_444926.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661507|sp|Q6FY67.1|MAK5_CANGA RecName: Full=ATP-dependent RNA helicase MAK5
gi|49524228|emb|CAG57819.1| unnamed protein product [Candida glabrata]
Length = 733
Score = 256 bits (654), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 175/518 (33%), Positives = 260/518 (50%), Gaps = 98/518 (18%)
Query: 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823
F +M K +IP A L KDI+G A TGSGKTLA+
Sbjct: 175 FTEMTPIQKLSIP-------------------------AALEGKDIMGKASTGSGKTLAY 209
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
GIPI+ ++ +N + +I
Sbjct: 210 GIPIIEKMIKSKDNL-------------------------------------RTNGIIFT 232
Query: 884 PTRELAIQVQNHILDAG----KYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPGRL 937
PTRELA QV H+ + K P + + GG+S +KQ R+L + I+VATPGR
Sbjct: 233 PTRELAQQVTKHLQNVCSMLLKKNPYMILSLTGGLSIQKQERLLKYDGSARIVVATPGRF 292
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS----QPRQTF 993
E I+ + KI+ LV+DE DR+++ GHF E + IL + S + QT
Sbjct: 293 LELIEKNEELMKRFAKIDVLVLDEADRLLQDGHFDEFEKILKHLGRIRKSLKNMEYWQTL 352
Query: 994 VFSATLTHSLKNSL--NLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGIT 1050
++SAT + L + L + K ++ SK S+ + +K L +N KS P ++D + I+
Sbjct: 353 IYSATFSTDLFDKLANSSWKKKNNSKDESEMESVLKHLMTKINFKSKPMMIDANPEDKIS 412
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
+ ES I C E+D Y YYF+ +PG TL+FCNSI SVK+L L L + +H+S
Sbjct: 413 AQIKESLIECAPLERDLYCYYFVTLYPGTTLIFCNSIESVKKLNAYLINLGINSFQIHSS 472
Query: 1111 MNQRQRLKNLDRFR---DQNN-----SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162
M Q+ RLKNL++F +NN ++L+A+DVAARGLDI GI+HV+HYH+P +++ YI
Sbjct: 473 MTQKNRLKNLEKFEAMASKNNHLGKPTVLIASDVAARGLDIKGIKHVVHYHLPHSADTYI 532
Query: 1163 HRSGRTARANNEGLTLVLIESDEI--PL--YIKMFNSLEK----------KVDLPDFPID 1208
HRSGRTAR +NEG+ +++ E PL ++ S E+ + +P PI+
Sbjct: 533 HRSGRTARGDNEGVAVMICSPQEAMGPLRKLRRLLASKEQISKSTKNKKWQQTVPLLPIE 592
Query: 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWLHRSG 1245
+L +++R LA I E + R D NWL ++
Sbjct: 593 IDILQQLRERSSLANDIAEHELASRSLRKDSNWLKQAA 630
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 167/511 (32%), Positives = 241/511 (47%), Gaps = 131/511 (25%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
++ T I L GF T IQ + +P+AL KDI+G A TGSGKTLA+GIPI+ ++
Sbjct: 161 DLSMTTINGLSNLGFTEMTPIQKLSIPAALEG-KDIMGKASTGSGKTLAYGIPIIEKMIK 219
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
+N + +I PTRELA QV
Sbjct: 220 SKDNL-------------------------------------RTNGIIFTPTRELAQQVT 242
Query: 277 NHILDAG----KYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPGRLWEFIQLGHFH 330
H+ + K P + + GG+S +KQ R+L + I+VATPGR E I+
Sbjct: 243 KHLQNVCSMLLKKNPYMILSLTGGLSIQKQERLLKYDGSARIVVATPGRFLELIEKNEEL 302
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
+ KI+ LV+DE DR+++ GHF E + IL + S LKN+
Sbjct: 303 MKRFAKIDVLVLDEADRLLQDGHFDEFEKILKHLGRIRKS--------------LKNM-- 346
Query: 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450
+ QT ++SAT + L + L S KK
Sbjct: 347 --------EYWQTLIYSATFSTDLFDKL----ANSSWKK--------------------- 373
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS-PKIVD 509
K++ KD +L+H + +N KS P ++D
Sbjct: 374 ---------------------KNNSKDESEMESVLKH--------LMTKINFKSKPMMID 404
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
+ I+ + ES I C E+D Y YYF+ +PG TL+FCNSI SVK+L L L
Sbjct: 405 ANPEDKISAQIKESLIECAPLERDLYCYYFVTLYPGTTLIFCNSIESVKKLNAYLINLGI 464
Query: 570 SPLPLHASMNQRQRLKNLDRFR---DQNN-----SILLATDVAARGLDIPGIEHVIHYHV 621
+ +H+SM Q+ RLKNL++F +NN ++L+A+DVAARGLDI GI+HV+HYH+
Sbjct: 465 NSFQIHSSMTQKNRLKNLEKFEAMASKNNHLGKPTVLIASDVAARGLDIKGIKHVVHYHL 524
Query: 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
P +++ YIHRSGRTAR +NEG+ V++ E
Sbjct: 525 PHSADTYIHRSGRTARGDNEGVAVMICSPQE 555
Score = 45.8 bits (107), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 1349 NLRYSWDALILAPTRELAIQVQNHILDAG----KYTPVKVACVVGGMSTEKQLRIL--NK 1402
NLR + +I PTRELA QV H+ + K P + + GG+S +KQ R+L +
Sbjct: 223 NLRT--NGIIFTPTRELAQQVTKHLQNVCSMLLKKNPYMILSLTGGLSIQKQERLLKYDG 280
Query: 1403 CPHILVATPG 1412
I+VATPG
Sbjct: 281 SARIVVATPG 290
>gi|452989521|gb|EME89276.1| hypothetical protein MYCFIDRAFT_185631 [Pseudocercospora fijiensis
CIRAD86]
Length = 723
Score = 256 bits (653), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 191/593 (32%), Positives = 294/593 (49%), Gaps = 84/593 (14%)
Query: 678 EKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQ 737
E+ +D++V K+ Q ++ A+ + D + E+ + P K KQ
Sbjct: 48 EEIDDVDVKRDEATGKVSLWSKEDQTALTADHASADSDADSWSGFEDDGPEIPVQKSAKQ 107
Query: 738 KKKKKQTYTSANKELLEVDT---------SNNEDMF-VQMAEWVKFNIPETIIRALYQKG 787
+ K T+ +++ E D + NED ++ W+ + + +L +
Sbjct: 108 NQPSK-VKTAKKQDIHEGDDNPPSAFSVLAANEDAADTDVSAWMPLKLSPDTMASLSKLK 166
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
F PT IQ +P + A D++G A TGSGKTLAFGIPIL
Sbjct: 167 FSNPTPIQEAAIPK-IFAGHDVIGKASTGSGKTLAFGIPIL------------------- 206
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI------LDAGK 901
E LE++ E K ++ ALIL+PTRELA Q+ +H+ LDA K
Sbjct: 207 -----ERFLEKISERE-------KLEQSTPIALILSPTRELAHQLNSHLAALFDGLDAKK 254
Query: 902 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
T +A + GG+S +KQ R+L +++ TPGRLWE I G L +I +LV+DE
Sbjct: 255 PT---IATLTGGLSLQKQQRLLRDA-DVVIGTPGRLWEVIGSGKGVAAALKQIEFLVVDE 310
Query: 962 TDRMIESGHFPELK---NILDRVTMTETSQP-------------RQTFVFSATLTHSLKN 1005
DR++ GHF E++ N LDR E Q RQT VFSAT L+
Sbjct: 311 ADRLLSEGHFKEVEEILNALDREDQDEEHQEVPDSSHAVKSPKERQTLVFSATFDRGLQK 370
Query: 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHD 1063
L K S + + +++ L LN + P+ +D+ + L E I C
Sbjct: 371 KLVGKI--SSKRDLLHNKEAMEYLMSKLNFREDIPQFIDVNPVNQLATGLKEGLIECSGT 428
Query: 1064 EKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 1122
EKD YLY +L R +VF NSIS+V+R+ LL L + L LH+ M Q+ RL++++R
Sbjct: 429 EKDLYLYTLLLLSSTKRAMVFTNSISAVRRIAPLLQNLNVNALALHSGMAQKARLRSVER 488
Query: 1123 F-RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
F + ++ +L+ATDVAARGLDI ++ VIHYH+PR ++ Y+HRSGRTARA +G ++++
Sbjct: 489 FSQSKDKVVLIATDVAARGLDISNVDLVIHYHLPRAADTYVHRSGRTARAGQQGSSILIC 548
Query: 1182 ESDEIPLYIKMFNSLEKKVDLPD---------FPIDESVLSLIKKRIDLAKSI 1225
+E+ ++ + + D ID +++ +KKR+ LAK +
Sbjct: 549 GPEEVAGVRRLVAKVHAQSAASDGKQGYYIRTLDIDRRIVTRLKKRLTLAKKL 601
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 168/524 (32%), Positives = 249/524 (47%), Gaps = 117/524 (22%)
Query: 141 SNNEDMF-VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
+ NED ++ W+ + + +L + F PT IQ +P + A D++G A TG
Sbjct: 136 AANEDAADTDVSAWMPLKLSPDTMASLSKLKFSNPTPIQEAAIPK-IFAGHDVIGKASTG 194
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKTLAFGIPIL E LE++ E K ++
Sbjct: 195 SGKTLAFGIPIL------------------------ERFLEKISERE-------KLEQST 223
Query: 260 LYALILAPTRELAIQVQNHI------LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
ALIL+PTRELA Q+ +H+ LDA K T +A + GG+S +KQ R+L ++
Sbjct: 224 PIALILSPTRELAHQLNSHLAALFDGLDAKKPT---IATLTGGLSLQKQQRLLRDA-DVV 279
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
+ TPGRLWE I G L +I +LV+DE DR++ G
Sbjct: 280 IGTPGRLWEVIGSGKGVAAALKQIEFLVVDEADRLLSEG--------------------- 318
Query: 374 QTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
HF E++ IL+ + + + Q S +H++K
Sbjct: 319 -------HFKEVEEILNALDREDQDEEHQEVPDS---SHAVK------------------ 350
Query: 434 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
S K Q L + T G+ K L KI K D L H +
Sbjct: 351 --SPKERQTL-------VFSATFDRGLQKKLV-GKISSKRD----------LLH-NKEAM 389
Query: 494 EEIQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVF 550
E + LN + P+ +D+ + L E I C EKD YLY +L R +VF
Sbjct: 390 EYLMSKLNFREDIPQFIDVNPVNQLATGLKEGLIECSGTEKDLYLYTLLLLSSTKRAMVF 449
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF-RDQNNSILLATDVAARGLD 609
NSIS+V+R+ LL L + L LH+ M Q+ RL++++RF + ++ +L+ATDVAARGLD
Sbjct: 450 TNSISAVRRIAPLLQNLNVNALALHSGMAQKARLRSVERFSQSKDKVVLIATDVAARGLD 509
Query: 610 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
I ++ VIHYH+PR ++ Y+HRSGRTARA +G ++++ +E+
Sbjct: 510 ISNVDLVIHYHLPRAADTYVHRSGRTARAGQQGSSILICGPEEV 553
Score = 49.7 bits (117), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 16/85 (18%)
Query: 1356 ALILAPTRELAIQVQNHI------LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 1409
ALIL+PTRELA Q+ +H+ LDA K T +A + GG+S +KQ R+L +++
Sbjct: 226 ALILSPTRELAHQLNSHLAALFDGLDAKKPT---IATLTGGLSLQKQQRLLRDA-DVVIG 281
Query: 1410 TPGAL-----SLKRIDLA-KSIEYL 1428
TPG L S K + A K IE+L
Sbjct: 282 TPGRLWEVIGSGKGVAAALKQIEFL 306
Score = 43.5 bits (101), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD---------FPIDE 1288
D ++HRSGRTARA +G ++++ +E+ ++ + + D ID
Sbjct: 526 DTYVHRSGRTARAGQQGSSILICGPEEVAGVRRLVAKVHAQSAASDGKQGYYIRTLDIDR 585
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+++ +KKR+ LAK + + +K K ++ D+ + A+++ + D E +
Sbjct: 586 RIVTRLKKRLTLAKKLADATIAKEKSHKEDDTMRSWAEELGVDYDSEEFAE 636
>gi|453089379|gb|EMF17419.1| DEAD-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 687
Score = 255 bits (651), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 171/463 (36%), Positives = 255/463 (55%), Gaps = 70/463 (15%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
+ED V +++W + + +L + F PT IQ V+P +LA D++G A TGSGK
Sbjct: 171 SEDTGVDVSQWNPLKLSPDTMASLSKLRFTKPTPIQQHVIPE-VLAGHDVIGKASTGSGK 229
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879
TLAFGIPIL E LE ++ K+ + A
Sbjct: 230 TLAFGIPIL------------------------ERFLESSQQRKKG------KSGSGPLA 259
Query: 880 LILAPTRELAIQVQNHI--LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L+L+PTRELA Q+ H+ L +G T +A + GG+S +KQ R+L K +++ TPGR
Sbjct: 260 LLLSPTRELAHQLDKHLTALFSGLSTDRPSIATLTGGLSLQKQQRML-KDADVVIGTPGR 318
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD----------------- 979
LWE I GH L I++LVIDE DR++ GHF E++ IL+
Sbjct: 319 LWEVIGDGHGVAASLKHIDFLVIDEADRLLSEGHFKEVEEILNALDRDEAQDESDETENA 378
Query: 980 ---RVTMTE-TSQP--RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 1033
R T ++ +S+P RQT VFSAT +L+ L + K + +S S++ L L
Sbjct: 379 TTPRTTKSQASSRPAKRQTLVFSATFDRALQRKL-VGKLSHRDNLLSNAQ-SMEYLLSKL 436
Query: 1034 NIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSV 1090
N + +PK +D+ + L E I C EKD YLY +L + RT+VF NSIS+V
Sbjct: 437 NFREETPKFIDMNPINQLATGLKEGLIECSGTEKDLYLYALLLLYSTQRTIVFTNSISAV 496
Query: 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN-------SILLATDVAARGLDI 1143
+R+ LL L + + LH+ M Q+ R+++++RF + + +IL+ATDVAARGLDI
Sbjct: 497 RRIAPLLQNLNLNAIALHSGMAQKARMRSVERFSGKTDADKVTTPAILIATDVAARGLDI 556
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
P I+ V+HYH+PRT++ Y+HRSGRTARA +G ++++ +E+
Sbjct: 557 PSIDLVVHYHLPRTADTYVHRSGRTARAGQQGSSVLICGPEEV 599
Score = 219 bits (558), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 167/525 (31%), Positives = 257/525 (48%), Gaps = 110/525 (20%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
+ED V +++W + + +L + F PT IQ V+P +LA D++G A TGSGK
Sbjct: 171 SEDTGVDVSQWNPLKLSPDTMASLSKLRFTKPTPIQQHVIPE-VLAGHDVIGKASTGSGK 229
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262
TLAFGIPIL E LE ++ K+ + A
Sbjct: 230 TLAFGIPIL------------------------ERFLESSQQRKKG------KSGSGPLA 259
Query: 263 LILAPTRELAIQVQNHI--LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L+L+PTRELA Q+ H+ L +G T +A + GG+S +KQ R+L K +++ TPGR
Sbjct: 260 LLLSPTRELAHQLDKHLTALFSGLSTDRPSIATLTGGLSLQKQQRML-KDADVVIGTPGR 318
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
LWE I GH L I++LVIDE DR+ +
Sbjct: 319 LWEVIGDGHGVAASLKHIDFLVIDEADRL----------------------------LSE 350
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG-DPSIK 438
GHF E++ IL+ + E +Q +AT + K+ + + + ++ S D +++
Sbjct: 351 GHFKEVEEILNALDRDE-AQDESDETENATTPRTTKSQASSRPAKRQTLVFSATFDRALQ 409
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
R K++ K +D+ L E +
Sbjct: 410 R----------------------------KLVGKLSHRDNLLS-------NAQSMEYLLS 434
Query: 499 LLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSIS 555
LN + +PK +D+ + L E I C EKD YLY +L + RT+VF NSIS
Sbjct: 435 KLNFREETPKFIDMNPINQLATGLKEGLIECSGTEKDLYLYALLLLYSTQRTIVFTNSIS 494
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS-------ILLATDVAARGL 608
+V+R+ LL L + + LH+ M Q+ R+++++RF + ++ IL+ATDVAARGL
Sbjct: 495 AVRRIAPLLQNLNLNAIALHSGMAQKARMRSVERFSGKTDADKVTTPAILIATDVAARGL 554
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
DIP I+ V+HYH+PRT++ Y+HRSGRTARA +G +V++ +E+
Sbjct: 555 DIPSIDLVVHYHLPRTADTYVHRSGRTARAGQQGSSVLICGPEEV 599
Score = 44.7 bits (104), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 16/81 (19%)
Query: 1356 ALILAPTRELAIQVQNHI--LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+L+PTRELA Q+ H+ L +G T +A + GG+S +KQ R+L K +++ TPG
Sbjct: 259 ALLLSPTRELAHQLDKHLTALFSGLSTDRPSIATLTGGLSLQKQQRML-KDADVVIGTPG 317
Query: 1413 ------------ALSLKRIDL 1421
A SLK ID
Sbjct: 318 RLWEVIGDGHGVAASLKHIDF 338
>gi|392349042|ref|XP_003750274.1| PREDICTED: ATP-dependent RNA helicase DDX24-like, partial [Rattus
norvegicus]
Length = 252
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/253 (51%), Positives = 177/253 (69%), Gaps = 7/253 (2%)
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+ A +VGGMST+KQ R+LN+ P I++ATPGRLWE I+ H HL+ L ++ LVIDE DR
Sbjct: 1 INTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELIKEKHPHLSNLRQLRCLVIDEADR 60
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG 1022
M+E HF EL +L+ + ++ + RQT VFSATLT H + KK K K +K
Sbjct: 61 MVEKDHFAELSQLLEMLNDSQYNPNRQTLVFSATLTLVHQAPARILHKKHVKKMDKTAKL 120
Query: 1023 DPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 1081
D ++++ ++ PK++DLT G +TLTE+KI C+ DEKD YLYYF++Q+PGR+L
Sbjct: 121 DLLMQKI----GMRGKPKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFLMQYPGRSL 176
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGL
Sbjct: 177 VFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGL 236
Query: 1142 DIPGIEHVIHYHV 1154
DIP ++HVIHY V
Sbjct: 237 DIPKVQHVIHYQV 249
Score = 223 bits (569), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 177/336 (52%), Gaps = 89/336 (26%)
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+ A +VGGMST+KQ R+LN+ P I++ATPGRLWE I+ H HL+ L ++ LVIDE DR
Sbjct: 1 INTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELIKEKHPHLSNLRQLRCLVIDEADR 60
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
M+E H F EL +L+ + ++ + RQT VFS
Sbjct: 61 MVEKDH----------------------------FAELSQLLEMLNDSQYNPNRQTLVFS 92
Query: 408 ATLT--HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
ATLT H + KK K K +K D L +KIG+
Sbjct: 93 ATLTLVHQAPARILHKKHVKKMDKTAKLDL------------------LMQKIGMRG--- 131
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI 525
PK++DLT G +TLTE+KI
Sbjct: 132 --------------------------------------KPKVIDLTRNEGTVETLTETKI 153
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+
Sbjct: 154 HCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLR 213
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621
NL++F + +LLATDVAARGLDIP ++HVIHY V
Sbjct: 214 NLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQV 249
Score = 45.1 bits (105), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 1382 VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+ A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 1 INTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 33
>gi|66356610|ref|XP_625483.1| Mak5 pre-mRNA splicing RNA SFII helicase [Cryptosporidium parvum Iowa
II]
gi|46226478|gb|EAK87472.1| Mak5 pre-mRNA splicing RNA SFII helicase [Cryptosporidium parvum Iowa
II]
Length = 837
Score = 251 bits (642), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 201/612 (32%), Positives = 299/612 (48%), Gaps = 147/612 (24%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
I +I++ L + GF PT IQ+ + A+ RKDIVGAAETGSGKTLA+GIPI+ I+
Sbjct: 181 IHPSILKGLSELGFLNPTPIQAACLVPAIRDRKDIVGAAETGSGKTLAYGIPIIANIMFS 240
Query: 835 LENPTEE------DENDSGLEE-------EAEEVLEELEEESANTTEFVK---------- 871
+ E+ E D G EE E +E +ELE T
Sbjct: 241 AQRRREKLEQKSLKEYDDGFEEPDIQLGIEEDEGFKELERMGFKMTSVSNIDSKVSKNNS 300
Query: 872 -KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPH 928
K+ L ALI+ P+RELAIQV++H+ GKYT + + VGG+S EKQ R++ N+
Sbjct: 301 FKSDQALQALIVLPSRELAIQVRDHLRALGKYTGLGIHAFVGGLSLEKQERLIATNRV-Q 359
Query: 929 ILVATPGRLWEFIQLGHFHLTELY------------------KINYLVIDETDRMIESGH 970
+ V TPGRL I G + L+ ++ +LV+DE DR+IE GH
Sbjct: 360 VAVGTPGRLSALI-FGEYENETLFGDEREASRKQVNTTLSIDELRFLVLDEADRLIEQGH 418
Query: 971 FPELKNILDRVTM--TETSQPR--QTFVFSATLT-----HSLKNSLNLKKG--QSKSK-- 1017
F ELK IL + E+ PR Q ++FSATLT H + LN + QSK K
Sbjct: 419 FRELKQILQLIYSDNKESKTPRKIQNYLFSATLTLPNHLHPRFSKLNTRNTGKQSKGKKD 478
Query: 1018 ----KVSKGDP--SIKRLQ----------------DLLNIKSPKIVD--------LTEKI 1047
KV+ P S K +Q DL K+ ++D +++
Sbjct: 479 IQDNKVTSIMPENSNKAMQSIMQYVKLRENQLFIIDLSRFKTKSLLDENGEQVQTMSQPN 538
Query: 1048 GIT---KTLTESKILCKHDEKDSYLYYFILQH----------------------PGRTLV 1082
GI K L S I C+ DE + L ++L++ G+ LV
Sbjct: 539 GIIQLPKGLKISMIKCESDELEMRLVLYLLKYFAPIWDTKAGNQQCSLCPSYIENGKILV 598
Query: 1083 FCNSISSVKRLTQLLTML------------------KCSP---------LPLHASMNQRQ 1115
F NSIS V RL LL+++ KCS + +H +++Q+Q
Sbjct: 599 FVNSISYVYRLAPLLSLVLVCKDTHEKELPGPKKRKKCSKACNEKSLKIIGIHGNLSQKQ 658
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
R++ ++ F+ N++IL+ TDV ARGLDIP ++ V+H PR + IHRSGRTARA+ +G
Sbjct: 659 RIQAIESFKSSNSAILICTDVLARGLDIPEVDVVVHLQAPRNISLMIHRSGRTARASRQG 718
Query: 1176 LTLVLIESDEIPLYIKMFNSLE---KKVDLPD--FPIDESVLSLIKKRIDLAKSIEYL-E 1229
++ ++P Y K ++ + V +PD + S +S +++R++LA IE L
Sbjct: 719 ECVLFCTPKDVPAYSKHLKAISLSFESVGIPDELQGLLSSQVSHVQQRLELANEIEGLGH 778
Query: 1230 SKIKKNRPDNWL 1241
S ++K R ++W+
Sbjct: 779 SILRKKRNNSWM 790
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 183/601 (30%), Positives = 277/601 (46%), Gaps = 147/601 (24%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
I +I++ L + GF PT IQ+ + A+ RKDIVGAAETGSGKTLA+GIPI+ I+
Sbjct: 181 IHPSILKGLSELGFLNPTPIQAACLVPAIRDRKDIVGAAETGSGKTLAYGIPIIANIMFS 240
Query: 218 LENPTEE------DENDSGLEE-------EAEEVLEELEEESANTTEFVK---------- 254
+ E+ E D G EE E +E +ELE T
Sbjct: 241 AQRRREKLEQKSLKEYDDGFEEPDIQLGIEEDEGFKELERMGFKMTSVSNIDSKVSKNNS 300
Query: 255 -KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPH 311
K+ L ALI+ P+RELAIQV++H+ GKYT + + VGG+S EKQ R++ N+
Sbjct: 301 FKSDQALQALIVLPSRELAIQVRDHLRALGKYTGLGIHAFVGGLSLEKQERLIATNRV-Q 359
Query: 312 ILVATPGRLWEFIQLGHFHLTELY------------------KINYLVIDETDRMIESGH 353
+ V TPGRL I G + L+ ++ +LV+DE DR+IE G
Sbjct: 360 VAVGTPGRLSALI-FGEYENETLFGDEREASRKQVNTTLSIDELRFLVLDEADRLIEQG- 417
Query: 354 FPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT--ETSQPR--QTFVFSAT 409
HF ELK IL + E+ PR Q ++FSAT
Sbjct: 418 ---------------------------HFRELKQILQLIYSDNKESKTPRKIQNYLFSAT 450
Query: 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469
LT L N L+ + + ++ K K +QD K I+ + + K+
Sbjct: 451 LT--LPNHLHPRFSKLNTRNTGKQSKGKKDIQD---NKVTSIMPENSNKAMQSIMQYVKL 505
Query: 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT---KTLTESKIL 526
+++ L+ L + + LL+ ++ +++ GI K L S I
Sbjct: 506 ------RENQLFIIDLSRF------KTKSLLDENGEQVQTMSQPNGIIQLPKGLKISMIK 553
Query: 527 CKHDEKDSYLYYFILQH----------------------PGRTLVFCNSISSVKRLTQLL 564
C+ DE + L ++L++ G+ LVF NSIS V RL LL
Sbjct: 554 CESDELEMRLVLYLLKYFAPIWDTKAGNQQCSLCPSYIENGKILVFVNSISYVYRLAPLL 613
Query: 565 TML------------------KCSP---------LPLHASMNQRQRLKNLDRFRDQNNSI 597
+++ KCS + +H +++Q+QR++ ++ F+ N++I
Sbjct: 614 SLVLVCKDTHEKELPGPKKRKKCSKACNEKSLKIIGIHGNLSQKQRIQAIESFKSSNSAI 673
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKT 657
L+ TDV ARGLDIP ++ V+H PR + IHRSGRTARA+ +G V+ ++P +
Sbjct: 674 LICTDVLARGLDIPEVDVVVHLQAPRNISLMIHRSGRTARASRQGECVLFCTPKDVPAYS 733
Query: 658 K 658
K
Sbjct: 734 K 734
Score = 61.2 bits (147), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPGA 1413
ALI+ P+RELAIQV++H+ GKYT + + VGG+S EKQ R++ N+ + V TPG
Sbjct: 309 ALIVLPSRELAIQVRDHLRALGKYTGLGIHAFVGGLSLEKQERLIATNRV-QVAVGTPGR 367
Query: 1414 LS 1415
LS
Sbjct: 368 LS 369
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 1241 LHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE---KKVDLPD--FPIDESVLSLIK 1295
+HRSGRTARA+ +G ++ ++P Y K ++ + V +PD + S +S ++
Sbjct: 705 IHRSGRTARASRQGECVLFCTPKDVPAYSKHLKAISLSFESVGIPDELQGLLSSQVSHVQ 764
Query: 1296 KRIDLAKSIEYL-ESKIKKNRPDNWLEKAAKDMDIIIDD--ENLIQPNQLLIFESRNLRY 1352
+R++LA IE L S ++K R ++W+ A + D+ + D E + P+Q+ ++ NL+
Sbjct: 765 QRLELANEIEGLGHSILRKKRNNSWMLNKAIEADLELSDQEEFSLSPDQMKEIQNLNLKR 824
Query: 1353 SW 1354
++
Sbjct: 825 NY 826
>gi|302849708|ref|XP_002956383.1| hypothetical protein VOLCADRAFT_31081 [Volvox carteri f. nagariensis]
gi|300258289|gb|EFJ42527.1| hypothetical protein VOLCADRAFT_31081 [Volvox carteri f. nagariensis]
Length = 495
Score = 251 bits (641), Expect = 2e-63, Method: Composition-based stats.
Identities = 138/321 (42%), Positives = 195/321 (60%), Gaps = 19/321 (5%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L ALIL PTRELA+QV +H+ G+ V+VA +VGG+S KQ R+L P +LVATPGR
Sbjct: 169 LRALILTPTRELALQVCSHLQVIGRVCGVRVAAIVGGISDVKQARLLAARPAVLVATPGR 228
Query: 937 LWEFIQ--------LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 988
LW+ I HL +L +++LV+DE DRM+ GH+ + + R
Sbjct: 229 LWDLIPPSTDRHGPRAAAHLADLTHLSFLVLDEADRMVAQGHYKQQQQQQQR----GKKH 284
Query: 989 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS---PKIVDLTE 1045
QTFVFSATLT L L++G + + +++ L D + ++ P++VDLT
Sbjct: 285 LLQTFVFSATLTLPLFLKKRLRRGGGGAGGGAA---TLESLMDRVPFRTSPPPRVVDLTP 341
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 1105
+ + + E+ + C E+D LYY + HPGRTLVF N++S+++R+ LL L L
Sbjct: 342 QRRLADRVAEAAVNCLDTERDEVLYYLLAVHPGRTLVFANAVSAIRRVAALLKALGLPAL 401
Query: 1106 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
LHA QRQRLK LDRFR Q S+L+ATDVAARGLDIPG+ V+HY +P +++ YIHR
Sbjct: 402 ALHAQQQQRQRLKALDRFRSQPQSVLVATDVAARGLDIPGVTTVVHYQLPASADTYIHRC 461
Query: 1166 GRTARA-NNEGLTLVLIESDE 1185
GRTAR +G+++ L+ E
Sbjct: 462 GRTARGLEGDGISIALVSPAE 482
Score = 160 bits (404), Expect = 6e-36, Method: Composition-based stats.
Identities = 73/149 (48%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
P++VDLT + + + E+ + C E+D LYY + HPGRTLVF N++S+++R+ LL
Sbjct: 334 PRVVDLTPQRRLADRVAEAAVNCLDTERDEVLYYLLAVHPGRTLVFANAVSAIRRVAALL 393
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L L LHA QRQRLK LDRFR Q S+L+ATDVAARGLDIPG+ V+HY +P +
Sbjct: 394 KALGLPALALHAQQQQRQRLKALDRFRSQPQSVLVATDVAARGLDIPGVTTVVHYQLPAS 453
Query: 625 SEIYIHRSGRTARA-NNEGLTVVLIESDE 652
++ YIHR GRTAR +G+++ L+ E
Sbjct: 454 ADTYIHRCGRTARGLEGDGISIALVSPAE 482
Score = 126 bits (317), Expect = 8e-26, Method: Composition-based stats.
Identities = 85/244 (34%), Positives = 125/244 (51%), Gaps = 46/244 (18%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L ALIL PTRELA+QV +H+ G+ V+VA +VGG+S KQ R+L P +LVATPGR
Sbjct: 169 LRALILTPTRELALQVCSHLQVIGRVCGVRVAAIVGGISDVKQARLLAARPAVLVATPGR 228
Query: 320 LWEFIQ--------LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 371
LW+ I HL +L +++LV+DE DRM+ GH+ + + R
Sbjct: 229 LWDLIPPSTDRHGPRAAAHLADLTHLSFLVLDEADRMVAQGHYKQQQQQQQRGK------ 282
Query: 372 PRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 431
K++L QTFVFSATLT L L++G + +
Sbjct: 283 --------------KHLL------------QTFVFSATLTLPLFLKKRLRRGGGGAGGGA 316
Query: 432 KGDPSIKRLQDLLNIKS---PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 488
+++ L D + ++ P++VDLT + + + E+ + C E+D LYY + HP
Sbjct: 317 A---TLESLMDRVPFRTSPPPRVVDLTPQRRLADRVAEAAVNCLDTERDEVLYYLLAVHP 373
Query: 489 GRTL 492
GRTL
Sbjct: 374 GRTL 377
Score = 65.9 bits (159), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
++ W +F + ++ L GF +PT IQ + A+ AR DI+GAA+TGSGKTLAFG+P
Sbjct: 1 LSAWAEFELHPDVLAGLAACGFTSPTPIQRECLHPAIRARVDIIGAAQTGSGKTLAFGLP 60
Query: 210 IL 211
I+
Sbjct: 61 IM 62
Score = 65.9 bits (159), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
++ W +F + ++ L GF +PT IQ + A+ AR DI+GAA+TGSGKTLAFG+P
Sbjct: 1 LSAWAEFELHPDVLAGLAACGFTSPTPIQRECLHPAIRARVDIIGAAQTGSGKTLAFGLP 60
Query: 827 IL 828
I+
Sbjct: 61 IM 62
Score = 65.5 bits (158), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA+QV +H+ G+ V+VA +VGG+S KQ R+L P +LVATPG L
Sbjct: 171 ALILTPTRELALQVCSHLQVIGRVCGVRVAAIVGGISDVKQARLLAARPAVLVATPGRL 229
>gi|268564436|ref|XP_002639106.1| Hypothetical protein CBG14925 [Caenorhabditis briggsae]
Length = 456
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 198/307 (64%), Gaps = 7/307 (2%)
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
+L E + LV+DETDRM+E G+F EL +IL+++ + QT VFSATLT + +
Sbjct: 16 YLAEWSNLKCLVVDETDRMVEEGYFSELTDILNKIHEAADKEKLQTLVFSATLTFA--KA 73
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKH-D 1063
++ + + K K I+RL L ++ K++DLT ++G L E++I C +
Sbjct: 74 QDVAEEEKKKAKELSAHQKIQRLIKLTGLRENKHKVIDLTRQMGTAGCLVEARINCGNLV 133
Query: 1064 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
EKD+ L Y + ++PGRT+VF NS+ + +RL +L + P+ LHA M Q+QRL+NL++F
Sbjct: 134 EKDTALVYLLNRYPGRTMVFVNSVDAARRLHHILNAINIDPMILHAKMIQKQRLRNLEKF 193
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ N++L+ATDVAARGLDI GI+HVIHY VP+ EIYIHRSGRTARA++ GLT+VL++
Sbjct: 194 AESKNAVLIATDVAARGLDIQGIDHVIHYQVPKKVEIYIHRSGRTARASHRGLTVVLVDP 253
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPID-ESVLSLIKKRIDLAKSIEYLESKIKKNR-PDNWL 1241
Y+K+ L + DL FPID E ++ IKKR+ LA I+ LE + KK + ++W
Sbjct: 254 QSRQFYMKLCKGLNRMQDLDIFPIDFEPLMIAIKKRVRLASEIDSLEFRCKKIKMSESWF 313
Query: 1242 HRSGRTA 1248
++ R A
Sbjct: 314 EKAAREA 320
Score = 175 bits (444), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
Query: 506 KIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
K++DLT ++G L E++I C + EKD+ L Y + ++PGRT+VF NS+ + +RL +L
Sbjct: 108 KVIDLTRQMGTAGCLVEARINCGNLVEKDTALVYLLNRYPGRTMVFVNSVDAARRLHHIL 167
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+ P+ LHA M Q+QRL+NL++F + N++L+ATDVAARGLDI GI+HVIHY VP+
Sbjct: 168 NAINIDPMILHAKMIQKQRLRNLEKFAESKNAVLIATDVAARGLDIQGIDHVIHYQVPKK 227
Query: 625 SEIYIHRSGRTARANNEGLTVVLIE 649
EIYIHRSGRTARA++ GLTVVL++
Sbjct: 228 VEIYIHRSGRTARASHRGLTVVLVD 252
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID-ESVLSLIKKRI 1298
++HRSGRTARA++ GLT+VL++ Y+K+ L + DL FPID E ++ IKKR+
Sbjct: 231 YIHRSGRTARASHRGLTVVLVDPQSRQFYMKLCKGLNRMQDLDIFPIDFEPLMIAIKKRV 290
Query: 1299 DLAKSIEYLESKIKKNR-PDNWLEKAAKDMDIIIDD 1333
LA I+ LE + KK + ++W EKAA++ D+ D+
Sbjct: 291 RLASEIDSLEFRCKKIKMSESWFEKAAREADLDYDE 326
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 33/166 (19%)
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+L E + LV+DETDRM+E G+ F EL +IL
Sbjct: 16 YLAEWSNLKCLVVDETDRMVEEGY----------------------------FSELTDIL 47
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS- 448
+++ + QT VFSATLT + + ++ + + K K I+RL L ++
Sbjct: 48 NKIHEAADKEKLQTLVFSATLTFA--KAQDVAEEEKKKAKELSAHQKIQRLIKLTGLREN 105
Query: 449 -PKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTL 492
K++DLT ++G L E++I C + EKD+ L Y + ++PGRT+
Sbjct: 106 KHKVIDLTRQMGTAGCLVEARINCGNLVEKDTALVYLLNRYPGRTM 151
>gi|389747586|gb|EIM88764.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 721
Score = 251 bits (640), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/399 (35%), Positives = 216/399 (54%), Gaps = 63/399 (15%)
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
V VA +VGGMS +KQ R+L + +LVATPGRLW+ ++ ++ +++LV+DE DR
Sbjct: 187 VSVAAIVGGMSAQKQKRVLERGVDVLVATPGRLWDVVEEDPTLAEDIKHLHFLVLDEADR 246
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS-----------LNLKKGQ 1013
MIE+GHF EL +L R+T E + F +L+ K N + G
Sbjct: 247 MIETGHFKELDGLL-RLTRREFQKETTEADFDFSLSAQTKGQHGAEFDSDCEEQNGEAGP 305
Query: 1014 SKSKKVSKGD-----------------------------------------------PSI 1026
K+ KG+ ++
Sbjct: 306 QSGKQDGKGEGEGVNDTMQTFVFSATLSKDLQRNLKKRGWGGGGAGGTGGRKGKEVASTL 365
Query: 1027 KRLQDLLNIKSP--KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 1084
L L+ + P ++VDL+ + G+ +TL E KI C EKD YLYYF+L++PGRTLVF
Sbjct: 366 DELLQRLDFRDPEPEVVDLSPEGGVVETLKECKIECLMTEKDIYLYYFLLRYPGRTLVFL 425
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
S+ ++R+ L L PLH+ M QRQRLKNLDRF+ ++++LLATD+A+RGLDIP
Sbjct: 426 ASVDGIRRMLPLFEFLGLPVWPLHSQMEQRQRLKNLDRFKSNHHAVLLATDIASRGLDIP 485
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLP 1203
++HV+HY +PRT++ Y+HR+GRTARA+ +G +++ DE + + SL + + +P
Sbjct: 486 SVDHVVHYQIPRTADAYVHRNGRTARASRKGFGMLMCAPDERRVMRGVLGSLGREESSIP 545
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWL 1241
+ I+ +L +K R+ LA+ IE + + K+ NWL
Sbjct: 546 EMTIEHHLLDKLKPRLQLARQIENAQHKEKKEKHEKNWL 584
Score = 227 bits (578), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 134/380 (35%), Positives = 201/380 (52%), Gaps = 55/380 (14%)
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
V VA +VGGMS +KQ R+L + +LVATPGRLW+ ++ ++ +++LV+DE DR
Sbjct: 187 VSVAAIVGGMSAQKQKRVLERGVDVLVATPGRLWDVVEEDPTLAEDIKHLHFLVLDEADR 246
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
MIE+G HF EL +L R+T E + F
Sbjct: 247 MIETG----------------------------HFKELDGLL-RLTRREFQKETTEADFD 277
Query: 408 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE- 466
+L+ Q+K + ++ D + +S K E G+ T+
Sbjct: 278 FSLS-----------AQTKGQHGAEFDSDCEEQNGEAGPQSGKQDGKGEGEGVNDTMQTF 326
Query: 467 --SKILCKHDEKD-----------SYLYYFILQHPGRTLCEEIQDL-LNIKSPKIVDLTE 512
S L K +++ + TL E +Q L P++VDL+
Sbjct: 327 VFSATLSKDLQRNLKKRGWGGGGAGGTGGRKGKEVASTLDELLQRLDFRDPEPEVVDLSP 386
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
+ G+ +TL E KI C EKD YLYYF+L++PGRTLVF S+ ++R+ L L
Sbjct: 387 EGGVVETLKECKIECLMTEKDIYLYYFLLRYPGRTLVFLASVDGIRRMLPLFEFLGLPVW 446
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLH+ M QRQRLKNLDRF+ ++++LLATD+A+RGLDIP ++HV+HY +PRT++ Y+HR+
Sbjct: 447 PLHSQMEQRQRLKNLDRFKSNHHAVLLATDIASRGLDIPSVDHVVHYQIPRTADAYVHRN 506
Query: 633 GRTARANNEGLTVVLIESDE 652
GRTARA+ +G +++ DE
Sbjct: 507 GRTARASRKGFGMLMCAPDE 526
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 17/107 (15%)
Query: 190 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPT------------EEDENDSGLEEEAEE 237
+D++G AETGSGKTLA+G+PIL+ ++ + + A
Sbjct: 4 RDVIGVAETGSGKTLAYGLPILSRLLTAATSSSPPSHLSTSLSSTSTSSPSPPSLPPAHS 63
Query: 238 VLEE-----LEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
V++ +E + KKTR L ALILAPTRELA+QV H+
Sbjct: 64 VIKNKNTNVKQENTTGRKTQKKKTRRPLRALILAPTRELALQVSAHL 110
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 17/107 (15%)
Query: 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPT------------EEDENDSGLEEEAEE 854
+D++G AETGSGKTLA+G+PIL+ ++ + + A
Sbjct: 4 RDVIGVAETGSGKTLAYGLPILSRLLTAATSSSPPSHLSTSLSSTSTSSPSPPSLPPAHS 63
Query: 855 VLEE-----LEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
V++ +E + KKTR L ALILAPTRELA+QV H+
Sbjct: 64 VIKNKNTNVKQENTTGRKTQKKKTRRPLRALILAPTRELALQVSAHL 110
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKK 1296
D ++HR+GRTARA+ +G +++ DE + + SL + + +P+ I+ +L +K
Sbjct: 500 DAYVHRNGRTARASRKGFGMLMCAPDERRVMRGVLGSLGREESSIPEMTIEHHLLDKLKP 559
Query: 1297 RIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDD 1333
R+ LA+ IE + + K+ NWL++ A+ MD+ +D+
Sbjct: 560 RLQLARQIENAQHKEKKEKHEKNWLKEMAEAMDVDLDE 597
Score = 43.1 bits (100), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 1382 VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
V VA +VGGMS +KQ R+L + +LVATPG L
Sbjct: 187 VSVAAIVGGMSAQKQKRVLERGVDVLVATPGRL 219
>gi|300120949|emb|CBK21191.2| unnamed protein product [Blastocystis hominis]
Length = 634
Score = 249 bits (637), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 152/492 (30%), Positives = 266/492 (54%), Gaps = 45/492 (9%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
EW +F++ +++++ L Q PT IQ + +A KD++GAA TGSGKTLAF +P++
Sbjct: 140 EWTEFHLHDSLVQKLTQIQCAKPTVIQEKAIEAAFRG-KDVLGAAPTGSGKTLAFCVPVI 198
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
+ +L+ EE A E+ + +I++PTREL
Sbjct: 199 ------------------------DWLLKHASEEPAEKAEW------NVRCIIISPTREL 228
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
++Q+ I + T ++ A ++GG++ KQ R+L+ P I++ TPGR+W F++
Sbjct: 229 SLQINRVITRLTENTNIRTAGLIGGLAIPKQERMLSHNPEIIIGTPGRIWYFMENYKLGP 288
Query: 949 TELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPR-QTFVFSATLTHSLKNS 1006
+ L + ++V DE D++++ SG F + + ++ E Q R Q FSATL NS
Sbjct: 289 SNLKNLRFIVWDEADKLVQKSGLFLSIDHTRS-LSRDEIDQLRSQALFFSATL-QVQTNS 346
Query: 1007 LNLKKGQSKSKKVSK-GDPSIKRLQDLLNIK-------SPKIVDLTEKIGITKTLTESKI 1058
++ ++ +++ K G+P I D + + V+ + + ++L+ +
Sbjct: 347 PQTRQLRTWMRQLGKRGNPEIVVTGDSSSNSNSSSSSSTASTVETEKPTALPRSLSIRSV 406
Query: 1059 -LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 1117
EK+++LY F Q+ GRTLVF NSIS +K + LL+ L+ L +++ M Q+QR+
Sbjct: 407 HFAGAHEKEAFLYAFSRQYRGRTLVFFNSISVLKSVYSLLSQLRVPVLRIYSGMQQKQRI 466
Query: 1118 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 1177
++L+RFR ++++LLATDVAARGLD+P + V+H+H+P T I++HR GRTAR GL
Sbjct: 467 QHLNRFRSLSDALLLATDVAARGLDLPAVHTVLHFHLPPTPVIFVHRCGRTARGGTRGLA 526
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEY-LESKIKKNR 1236
+ ++ + E LY ++ P FP+ +V + + + +A+ I + + K +R
Sbjct: 527 IAMVTAGEKKLYREICQYCGAPNGFPGFPVGAAVSPAVIRCVGIAREIAREVAAATKTDR 586
Query: 1237 PDNWLHRSGRTA 1248
+WL +S A
Sbjct: 587 DADWLRKSAEEA 598
Score = 135 bits (340), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 89/122 (72%)
Query: 531 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 590
EK+++LY F Q+ GRTLVF NSIS +K + LL+ L+ L +++ M Q+QR+++L+RF
Sbjct: 413 EKEAFLYAFSRQYRGRTLVFFNSISVLKSVYSLLSQLRVPVLRIYSGMQQKQRIQHLNRF 472
Query: 591 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIES 650
R ++++LLATDVAARGLD+P + V+H+H+P T I++HR GRTAR GL + ++ +
Sbjct: 473 RSLSDALLLATDVAARGLDLPAVHTVLHFHLPPTPVIFVHRCGRTARGGTRGLAIAMVTA 532
Query: 651 DE 652
E
Sbjct: 533 GE 534
Score = 110 bits (276), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 164/351 (46%), Gaps = 70/351 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
EW +F++ +++++ L Q PT IQ + +A KD++GAA TGSGKTLAF +P++
Sbjct: 140 EWTEFHLHDSLVQKLTQIQCAKPTVIQEKAIEAAFRG-KDVLGAAPTGSGKTLAFCVPVI 198
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
+ +L+ EE A E+ + +I++PTREL
Sbjct: 199 ------------------------DWLLKHASEEPAEKAEW------NVRCIIISPTREL 228
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
++Q+ I + T ++ A ++GG++ KQ R+L+ P I++ TPGR+W F++
Sbjct: 229 SLQINRVITRLTENTNIRTAGLIGGLAIPKQERMLSHNPEIIIGTPGRIWYFMENYKLGP 288
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L + ++V DE D++++ +SG F + +
Sbjct: 289 SNLKNLRFIVWDEADKLVQ---------------------------KSGLFLSIDHTRS- 320
Query: 392 VTMTETSQPR-QTFVFSATLTHSLKNSLNLKKGQSKSKKVSK-GDPSIKRLQD------- 442
++ E Q R Q FSATL NS ++ ++ +++ K G+P I D
Sbjct: 321 LSRDEIDQLRSQALFFSATL-QVQTNSPQTRQLRTWMRQLGKRGNPEIVVTGDSSSNSNS 379
Query: 443 LLNIKSPKIVDLTEKIGITKTLT-ESKILCKHDEKDSYLYYFILQHPGRTL 492
+ + V+ + + ++L+ S EK+++LY F Q+ GRTL
Sbjct: 380 SSSSSTASTVETEKPTALPRSLSIRSVHFAGAHEKEAFLYAFSRQYRGRTL 430
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P ++HR GRTAR GL + ++ + E LY ++ P FP+ +V + +
Sbjct: 507 PVIFVHRCGRTARGGTRGLAIAMVTAGEKKLYREICQYCGAPNGFPGFPVGAAVSPAVIR 566
Query: 1297 RIDLAKSIEY-LESKIKKNRPDNWLEKAAKDMDI 1329
+ +A+ I + + K +R +WL K+A++ D+
Sbjct: 567 CVGIAREIAREVAAATKTDRDADWLRKSAEEADL 600
Score = 48.9 bits (115), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 1354 WD--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
W+ +I++PTREL++Q+ I + T ++ A ++GG++ KQ R+L+ P I++ TP
Sbjct: 215 WNVRCIIISPTRELSLQINRVITRLTENTNIRTAGLIGGLAIPKQERMLSHNPEIIIGTP 274
Query: 1412 G 1412
G
Sbjct: 275 G 275
>gi|294932199|ref|XP_002780153.1| ATP-dependent RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239890075|gb|EER11948.1| ATP-dependent RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 702
Score = 249 bits (637), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 164/472 (34%), Positives = 253/472 (53%), Gaps = 82/472 (17%)
Query: 767 MAEW--VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAF 823
M EW + +IP+ I+ L GF PT+IQ +P ALL KDI+ AAETGSGKTLA+
Sbjct: 128 MNEWKSISSSIPDEILMGLKGLGFTIPTQIQRQSIPPALLPIGKDILAAAETGSGKTLAY 187
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
GIP+LT I+ + + +D+ND +++N R +L A+++
Sbjct: 188 GIPLLTNILYMESSSSLKDDND----------------DNSNR-------RRRLDAIVVV 224
Query: 884 PTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942
PTRELA+QV H++ G Y P + +A +VGGMS +KQ R+++K P+I+VATPGRL +
Sbjct: 225 PTRELAMQVYTHLIKVGHYIPHLLIAPIVGGMSIQKQHRLMHKVPNIIVATPGRLAALLG 284
Query: 943 LGHFHLT---------------ELYK-----INYLVIDETDRMI-ESGHFPELKNILDRV 981
++ EL K + +V+DE DR++ + GHF +L +LD +
Sbjct: 285 CATIKVSGDVLDRADTEIQASDELRKKLIPQLRTIVLDEADRLVADEGHFKDLTRVLDII 344
Query: 982 TMTETSQPRQTFVFSATLTHSLKNSLNL-----KKGQSKSKKVSKGDPSIKRLQDLLNIK 1036
T Q VFSATL + + KK KS+ GD I RL L ++
Sbjct: 345 YTTTQVNKIQHLVFSATLATESSHITGIVSKREKKRIEKSRNQIAGD-KITRLLSKLRLR 403
Query: 1037 SPK---IVDLTEKIGI-----------TKTLTESKILCKHDEKDSYLYYFILQHP----- 1077
+ K ++DLT+ + T T E ++ D + + LYY +
Sbjct: 404 TEKHREVIDLTKGDSVNAKDTSSSLPDTLTFKEIRVSVDKDREAALLYYLHYRFGPKSDK 463
Query: 1078 ------GRTLVFCNSISSVKRLTQLLTML---KCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
G+ ++F NSIS V RL+ +L++ K + LH+ + Q+ RLK L++FR+ +
Sbjct: 464 CKEDSYGKIIMFVNSISYVYRLSSILSLATSDKVNVCGLHSDLKQKDRLKKLEKFRNSSC 523
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+L+ TD++ARGLD+P ++ VIH + PR E++IHRSGRTARA +G +++
Sbjct: 524 GVLVTTDLSARGLDLPDVDTVIHVNCPRVLELFIHRSGRTARAGRKGTCIII 575
Score = 238 bits (608), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 172/530 (32%), Positives = 266/530 (50%), Gaps = 114/530 (21%)
Query: 150 MAEW--VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAF 206
M EW + +IP+ I+ L GF PT+IQ +P ALL KDI+ AAETGSGKTLA+
Sbjct: 128 MNEWKSISSSIPDEILMGLKGLGFTIPTQIQRQSIPPALLPIGKDILAAAETGSGKTLAY 187
Query: 207 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
GIP+LT I+ + + +D+ND +++N R +L A+++
Sbjct: 188 GIPLLTNILYMESSSSLKDDND----------------DNSN-------RRRRLDAIVVV 224
Query: 267 PTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 325
PTRELA+QV H++ G Y P + +A +VGGMS +KQ R+++K P+I+VATPGRL +
Sbjct: 225 PTRELAMQVYTHLIKVGHYIPHLLIAPIVGGMSIQKQHRLMHKVPNIIVATPGRLAALLG 284
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGH------FPELKNILDRVTMTETSQPRQTMIES 379
K++ V+D D I++ P+L+ I+ + + + +
Sbjct: 285 CATI------KVSGDVLDRADTEIQASDELRKKLIPQLRTIV-------LDEADRLVADE 331
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL-----KKGQSKSKKVSKGD 434
GHF +L +LD + T Q VFSATL + + KK KS+ GD
Sbjct: 332 GHFKDLTRVLDIIYTTTQVNKIQHLVFSATLATESSHITGIVSKREKKRIEKSRNQIAGD 391
Query: 435 PSIKRLQDLLNIKSPK---IVDLTEKIGI-----------TKTLTESKILCKHDEKDSYL 480
I RL L +++ K ++DLT+ + T T E ++ D + + L
Sbjct: 392 -KITRLLSKLRLRTEKHREVIDLTKGDSVNAKDTSSSLPDTLTFKEIRVSVDKDREAALL 450
Query: 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540
YY + KS K CK +DSY
Sbjct: 451 YYLHYR-------------FGPKSDK--------------------CK---EDSY----- 469
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTML---KCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597
G+ ++F NSIS V RL+ +L++ K + LH+ + Q+ RLK L++FR+ + +
Sbjct: 470 ----GKIIMFVNSISYVYRLSSILSLATSDKVNVCGLHSDLKQKDRLKKLEKFRNSSCGV 525
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
L+ TD++ARGLD+P ++ VIH + PR E++IHRSGRTARA +G +++
Sbjct: 526 LVTTDLSARGLDLPDVDTVIHVNCPRVLELFIHRSGRTARAGRKGTCIII 575
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 1346 ESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCP 1404
++ N R DA+++ PTRELA+QV H++ G Y P + +A +VGGMS +KQ R+++K P
Sbjct: 210 DNSNRRRRLDAIVVVPTRELAMQVYTHLIKVGHYIPHLLIAPIVGGMSIQKQHRLMHKVP 269
Query: 1405 HILVATPGALS 1415
+I+VATPG L+
Sbjct: 270 NIIVATPGRLA 280
>gi|67617125|ref|XP_667529.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 24 [Cryptosporidium
hominis TU502]
gi|54658672|gb|EAL37298.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 24 [Cryptosporidium
hominis]
Length = 837
Score = 249 bits (637), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 198/612 (32%), Positives = 295/612 (48%), Gaps = 147/612 (24%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
I +I++ L + GF PT IQ+ + A+ RKDIVGAAETGSGKTLA+GIPI+ I+
Sbjct: 181 IHPSILKGLSELGFLNPTPIQAACLVPAIRDRKDIVGAAETGSGKTLAYGIPIIANIMFS 240
Query: 835 LENPTEE------DENDSGLEE-------EAEEVLEELEEESANTTEFVK---------- 871
+ E+ E D G EE E +E +ELE T
Sbjct: 241 AQRRREKLEQKSLKEYDDGFEEPDIQLGIEEDEGFKELERMGFKMTSVSNIDSKVSKNNS 300
Query: 872 -KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPH 928
K+ L ALI+ P+RELAIQV++H+ GKYT + + VGG+S EKQ R++ N+
Sbjct: 301 FKSDEALQALIVLPSRELAIQVRDHLRALGKYTGLGIHAFVGGLSLEKQERLIATNRV-Q 359
Query: 929 ILVATPGRLWEFIQLGHFHLTELY------------------KINYLVIDETDRMIESGH 970
+ V TPGRL I G + L+ +I +LV+DE DR+IE GH
Sbjct: 360 VAVGTPGRLSALI-FGEYENETLFGDEREASKKQVNTTLSIDEIRFLVLDEADRLIEQGH 418
Query: 971 FPELKNILDRVTM--TETSQPR--QTFVFSATLT-----HSLKNSLNLKKG--QSKSKKV 1019
F ELK IL + E+ PR Q ++FSATLT H + LN + QSK KK
Sbjct: 419 FRELKQILQLIYSDNKESKTPRKIQNYLFSATLTLPNHLHPRFSKLNTRNTGKQSKGKKD 478
Query: 1020 SKGDP--------SIKRLQDLLNIKSPK-----IVDLTEK-------------------- 1046
+ + S K +Q ++ + I+DL+
Sbjct: 479 IQNNKVMSIMPENSNKAMQSIMQYVKLRENQLFIIDLSRFKTKSSLDENGEQVQTMSQPN 538
Query: 1047 --IGITKTLTESKILCKHDEKDSYLYYFILQH----------------------PGRTLV 1082
I + K L S I C+ DE + L ++L++ G+ LV
Sbjct: 539 GIIQLPKGLKISMIKCESDELEMRLVLYLLKYFAPIWDTKVRNQPCSLCPSYIENGKILV 598
Query: 1083 FCNSISSVKRLTQLLTML------------------KCSP---------LPLHASMNQRQ 1115
F NSIS V RL LL+++ KCS + +H +++Q+Q
Sbjct: 599 FVNSISYVYRLAPLLSLVLVCKDTHEKELPSPKKRKKCSKACNEKSLKIIGIHGNLSQKQ 658
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
R++ ++ F+ N++IL+ TDV ARGLDIP ++ V+H PR + IHRSGRTARA+ +G
Sbjct: 659 RIQAIESFKSSNSAILICTDVLARGLDIPEVDVVVHLQAPRNISLMIHRSGRTARASRQG 718
Query: 1176 LTLVLIESDEIPLYIKMFNSLE---KKVDLPD--FPIDESVLSLIKKRIDLAKSIEYL-E 1229
++ ++P Y K ++ + V PD + S +S +++R++LA IE L
Sbjct: 719 ECVLFCTPKDVPAYSKHLKAISLSFESVGTPDELQGLLSSQVSHVQQRLELANEIEGLGH 778
Query: 1230 SKIKKNRPDNWL 1241
S ++K R ++W+
Sbjct: 779 SILRKKRNNSWM 790
Score = 222 bits (565), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 184/600 (30%), Positives = 276/600 (46%), Gaps = 145/600 (24%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
I +I++ L + GF PT IQ+ + A+ RKDIVGAAETGSGKTLA+GIPI+ I+
Sbjct: 181 IHPSILKGLSELGFLNPTPIQAACLVPAIRDRKDIVGAAETGSGKTLAYGIPIIANIMFS 240
Query: 218 LENPTEE------DENDSGLEE-------EAEEVLEELEEESANTTEFVK---------- 254
+ E+ E D G EE E +E +ELE T
Sbjct: 241 AQRRREKLEQKSLKEYDDGFEEPDIQLGIEEDEGFKELERMGFKMTSVSNIDSKVSKNNS 300
Query: 255 -KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPH 311
K+ L ALI+ P+RELAIQV++H+ GKYT + + VGG+S EKQ R++ N+
Sbjct: 301 FKSDEALQALIVLPSRELAIQVRDHLRALGKYTGLGIHAFVGGLSLEKQERLIATNRV-Q 359
Query: 312 ILVATPGRLWEFIQLGHFHLTELY------------------KINYLVIDETDRMIESGH 353
+ V TPGRL I G + L+ +I +LV+DE DR+IE G
Sbjct: 360 VAVGTPGRLSALI-FGEYENETLFGDEREASKKQVNTTLSIDEIRFLVLDEADRLIEQG- 417
Query: 354 FPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT--ETSQPR--QTFVFSAT 409
HF ELK IL + E+ PR Q ++FSAT
Sbjct: 418 ---------------------------HFRELKQILQLIYSDNKESKTPRKIQNYLFSAT 450
Query: 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469
LT L N L+ + + ++ K K +D+ N K I+ + + K+
Sbjct: 451 LT--LPNHLHPRFSKLNTRNTGKQS---KGKKDIQNNKVMSIMPENSNKAMQSIMQYVKL 505
Query: 470 LCKHDEKDSYLYYFILQH--PGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC 527
+++ L+ L +L E + + + P + I + K L S I C
Sbjct: 506 ------RENQLFIIDLSRFKTKSSLDENGEQVQTMSQPNGI-----IQLPKGLKISMIKC 554
Query: 528 KHDEKDSYLYYFILQH----------------------PGRTLVFCNSISSVKRLTQLLT 565
+ DE + L ++L++ G+ LVF NSIS V RL LL+
Sbjct: 555 ESDELEMRLVLYLLKYFAPIWDTKVRNQPCSLCPSYIENGKILVFVNSISYVYRLAPLLS 614
Query: 566 ML------------------KCSP---------LPLHASMNQRQRLKNLDRFRDQNNSIL 598
++ KCS + +H +++Q+QR++ ++ F+ N++IL
Sbjct: 615 LVLVCKDTHEKELPSPKKRKKCSKACNEKSLKIIGIHGNLSQKQRIQAIESFKSSNSAIL 674
Query: 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK 658
+ TDV ARGLDIP ++ V+H PR + IHRSGRTARA+ +G V+ ++P +K
Sbjct: 675 ICTDVLARGLDIPEVDVVVHLQAPRNISLMIHRSGRTARASRQGECVLFCTPKDVPAYSK 734
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPGA 1413
ALI+ P+RELAIQV++H+ GKYT + + VGG+S EKQ R++ N+ + V TPG
Sbjct: 309 ALIVLPSRELAIQVRDHLRALGKYTGLGIHAFVGGLSLEKQERLIATNRV-QVAVGTPGR 367
Query: 1414 LS 1415
LS
Sbjct: 368 LS 369
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 1241 LHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE---KKVDLPD--FPIDESVLSLIK 1295
+HRSGRTARA+ +G ++ ++P Y K ++ + V PD + S +S ++
Sbjct: 705 IHRSGRTARASRQGECVLFCTPKDVPAYSKHLKAISLSFESVGTPDELQGLLSSQVSHVQ 764
Query: 1296 KRIDLAKSIEYL-ESKIKKNRPDNWLEKAAKDMDIIIDD--ENLIQPNQLLIFESRNLRY 1352
+R++LA IE L S ++K R ++W+ A + D+ + D E P+Q+ ++ NL+
Sbjct: 765 QRLELANEIEGLGHSILRKKRNNSWMLNKAIEADLELSDQEEFSFSPDQMKEIQNLNLKR 824
Query: 1353 SW 1354
++
Sbjct: 825 NY 826
>gi|320165920|gb|EFW42819.1| ATP-dependent RNA helicase DDX24 [Capsaspora owczarzaki ATCC 30864]
Length = 1137
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/260 (45%), Positives = 174/260 (66%), Gaps = 2/260 (0%)
Query: 990 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 1049
RQTFVFSAT+T ++ ++ SK KKV + P L+ L P I+DL+ K G+
Sbjct: 773 RQTFVFSATMTLDRESFRKSRRVVSKKKKVDRS-PLAVVLRQLDMQDDPAIIDLSGKRGL 831
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA 1109
+TLTE+KI C +EKD YLYY + + PGRTLVF NSI ++R+ + +L PLPLHA
Sbjct: 832 AQTLTEAKISCLKEEKDMYLYYLLKRFPGRTLVFVNSIDCIRRVVSIFVLLGLKPLPLHA 891
Query: 1110 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 1169
++ QRQR+KNLDRFR NS ++ATDVAARGLDI G++HVIHY +PR E Y+HR+GRTA
Sbjct: 892 NLQQRQRMKNLDRFRADPNSFIVATDVAARGLDIAGVDHVIHYQMPRDPETYVHRAGRTA 951
Query: 1170 RANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
RAN G+++ ++ +++ + + ++L ++ +P FPID L+ IKKR+ LA+ I+ E
Sbjct: 952 RANAAGISICVVGPEDLKGFRGICSALGREDGIPSFPIDAQFLAGIKKRLSLARQIDQFE 1011
Query: 1230 SKIKKNRPDN-WLHRSGRTA 1248
K + ++ N W ++ + A
Sbjct: 1012 HKARSDKQHNEWFKKAAQEA 1031
Score = 196 bits (498), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 113/149 (75%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
P I+DL+ K G+ +TLTE+KI C +EKD YLYY + + PGRTLVF NSI ++R+ +
Sbjct: 820 PAIIDLSGKRGLAQTLTEAKISCLKEEKDMYLYYLLKRFPGRTLVFVNSIDCIRRVVSIF 879
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PLPLHA++ QRQR+KNLDRFR NS ++ATDVAARGLDI G++HVIHY +PR
Sbjct: 880 VLLGLKPLPLHANLQQRQRMKNLDRFRADPNSFIVATDVAARGLDIAGVDHVIHYQMPRD 939
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
E Y+HR+GRTARAN G+++ ++ +++
Sbjct: 940 PETYVHRAGRTARANAAGISICVVGPEDL 968
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 133/214 (62%), Gaps = 15/214 (7%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M+EW F + E +I+ L G+ PT IQ + L +DI+GA+ETGSGKTLAF +P
Sbjct: 431 MSEWNGFGLHELLIKGLATAGYARPTPIQREALLKGLRDYQDIIGASETGSGKTLAFALP 490
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT-RNK-LYALILAP 267
IL I+N G ++EA + ++ A T KK +N+ L ALIL P
Sbjct: 491 ILQVILN-------------GRDKEAARESQNGDDNEAETDAASKKVFKNRPLSALILTP 537
Query: 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
TRELA Q++ I+ K+T + V V+GG+S EKQ R+L+ CP I+VATPGRLW+++ G
Sbjct: 538 TRELASQIREQIVKVAKFTDISVVTVIGGLSAEKQRRVLSYCPDIVVATPGRLWDYMSQG 597
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
+ HLTEL + +LV+DE DRM+ +GHF EL IL
Sbjct: 598 NQHLTELRYLRHLVLDEADRMVATGHFEELTKIL 631
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 133/214 (62%), Gaps = 15/214 (7%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M+EW F + E +I+ L G+ PT IQ + L +DI+GA+ETGSGKTLAF +P
Sbjct: 431 MSEWNGFGLHELLIKGLATAGYARPTPIQREALLKGLRDYQDIIGASETGSGKTLAFALP 490
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT-RNK-LYALILAP 884
IL I+N G ++EA + ++ A T KK +N+ L ALIL P
Sbjct: 491 ILQVILN-------------GRDKEAARESQNGDDNEAETDAASKKVFKNRPLSALILTP 537
Query: 885 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
TRELA Q++ I+ K+T + V V+GG+S EKQ R+L+ CP I+VATPGRLW+++ G
Sbjct: 538 TRELASQIREQIVKVAKFTDISVVTVIGGLSAEKQRRVLSYCPDIVVATPGRLWDYMSQG 597
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNIL 978
+ HLTEL + +LV+DE DRM+ +GHF EL IL
Sbjct: 598 NQHLTELRYLRHLVLDEADRMVATGHFEELTKIL 631
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P+ ++HR+GRTARAN G+++ ++ +++ + + ++L ++ +P FPID L+ IKK
Sbjct: 940 PETYVHRAGRTARANAAGISICVVGPEDLKGFRGICSALGREDGIPSFPIDAQFLAGIKK 999
Query: 1297 RIDLAKSIEYLESKIKKNRPDN-WLEKAAKDMDIIIDDENLI 1337
R+ LA+ I+ E K + ++ N W +KAA++ DI +D++ L+
Sbjct: 1000 RLSLARQIDQFEHKARSDKQHNEWFKKAAQEADIELDEDLLV 1041
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 401 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460
RQTFVFSAT+T ++ ++ SK KKV + P L+ L P I+DL+ K G+
Sbjct: 773 RQTFVFSATMTLDRESFRKSRRVVSKKKKVDRS-PLAVVLRQLDMQDDPAIIDLSGKRGL 831
Query: 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
+TLTE+KI C +EKD YLYY + + PGRTL
Sbjct: 832 AQTLTEAKISCLKEEKDMYLYYLLKRFPGRTLV 864
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 4/71 (5%)
Query: 1344 IFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
+F++R L ALIL PTRELA Q++ I+ K+T + V V+GG+S EKQ R+L+ C
Sbjct: 524 VFKNRPL----SALILTPTRELASQIREQIVKVAKFTDISVVTVIGGLSAEKQRRVLSYC 579
Query: 1404 PHILVATPGAL 1414
P I+VATPG L
Sbjct: 580 PDIVVATPGRL 590
>gi|315040650|ref|XP_003169702.1| ATP-dependent RNA helicase MAK5 [Arthroderma gypseum CBS 118893]
gi|311345664|gb|EFR04867.1| ATP-dependent RNA helicase MAK5 [Arthroderma gypseum CBS 118893]
Length = 743
Score = 247 bits (631), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 179/518 (34%), Positives = 266/518 (51%), Gaps = 60/518 (11%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
E+ V ++ W ++ + +L + F PT IQ +P +LA +D++G A TGSGKT
Sbjct: 158 EEADVDVSAWDTLDLRSELQTSLSRLKFAQPTPIQKAAIPE-ILAGRDVIGKAATGSGKT 216
Query: 821 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880
LAFG+PIL + +L+ E+ + + K AL
Sbjct: 217 LAFGLPIL------------------------QYLLDRQEQHPSTPSTSSKSHGKTPTAL 252
Query: 881 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
IL+PTRELA Q+ H+ + P +A + GG+S KQ R L + ++V TPGRL
Sbjct: 253 ILSPTRELAHQLVKHLKEVTSSAPNVDAYIASITGGLSVHKQQRQLAEA-DVIVGTPGRL 311
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP-------- 989
W+ + LT+L I +LV+DE DR++ GHF E+ +L + TS
Sbjct: 312 WDMVSSTPKILTKLRLIKFLVVDEADRLLSEGHFKEVGELLSALDKARTSDEDIDDDSEE 371
Query: 990 ------RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIV 1041
RQT VFSAT L+ L K+ S + S++ L L + P+ +
Sbjct: 372 EDETVERQTLVFSATFQKGLQQKLA-KRDNSFHDNLLDKKESMEYLLKKLRFRDEKPRFI 430
Query: 1042 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTML 1100
D+ + L E I C EKD YLY +L +P TLVF NSISSV+RLT L L
Sbjct: 431 DVNPISQMADNLKEGIIECSAMEKDLYLYAVLLYYPKHCTLVFTNSISSVRRLTHFLQNL 490
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
L LH+SM Q+ RL+ ++RF + IL+ATDVAARGLD+ GI+ V+HYHVPRT
Sbjct: 491 NLPALSLHSSMAQKARLRAVERFSSPTADPSPILIATDVAARGLDMQGIDLVVHYHVPRT 550
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIP----LYIKMFNSLEKKVDLPD-----FPID 1208
++ YIHRSGRTARA+ G ++++ +E L K+ ++ ++K D +D
Sbjct: 551 ADTYIHRSGRTARASASGKSILICAPEETAGVTRLVAKVHHTHKRKASSKDPQLHSIHLD 610
Query: 1209 ESVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLHRSG 1245
+++ ++ R L+K I E +K K + +WL +
Sbjct: 611 RGIVTRLRPRATLSKKITESTIAKEKISSETDWLRSAA 648
Score = 224 bits (571), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 170/516 (32%), Positives = 249/516 (48%), Gaps = 102/516 (19%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
E+ V ++ W ++ + +L + F PT IQ +P +LA +D++G A TGSGKT
Sbjct: 158 EEADVDVSAWDTLDLRSELQTSLSRLKFAQPTPIQKAAIPE-ILAGRDVIGKAATGSGKT 216
Query: 204 LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263
LAFG+PIL + +L+ E+ + + K AL
Sbjct: 217 LAFGLPIL------------------------QYLLDRQEQHPSTPSTSSKSHGKTPTAL 252
Query: 264 ILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
IL+PTRELA Q+ H+ + P +A + GG+S KQ R L + ++V TPGRL
Sbjct: 253 ILSPTRELAHQLVKHLKEVTSSAPNVDAYIASITGGLSVHKQQRQLAEA-DVIVGTPGRL 311
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
W+ + LT+L I +LV+DE DR++ GHF E+ +L + TS
Sbjct: 312 WDMVSSTPKILTKLRLIKFLVVDEADRLLSEGHFKEVGELLSALDKARTSDEDIDDDS-- 369
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
+ + RQT VFSAT L+ +K++K D S
Sbjct: 370 ------------EEEDETVERQTLVFSATFQKGLQ------------QKLAKRDNSFH-- 403
Query: 441 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500
+LL D+K+S Y L ++++
Sbjct: 404 DNLL-----------------------------DKKESMEY----------LLKKLR--F 422
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKR 559
+ P+ +D+ + L E I C EKD YLY +L +P TLVF NSISSV+R
Sbjct: 423 RDEKPRFIDVNPISQMADNLKEGIIECSAMEKDLYLYAVLLYYPKHCTLVFTNSISSVRR 482
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHV 616
LT L L L LH+SM Q+ RL+ ++RF + IL+ATDVAARGLD+ GI+ V
Sbjct: 483 LTHFLQNLNLPALSLHSSMAQKARLRAVERFSSPTADPSPILIATDVAARGLDMQGIDLV 542
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+HYHVPRT++ YIHRSGRTARA+ G ++++ +E
Sbjct: 543 VHYHVPRTADTYIHRSGRTARASASGKSILICAPEE 578
Score = 46.6 bits (109), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIP----LYIKMFNSLEKKVDLPD-----FPIDE 1288
D ++HRSGRTARA+ G ++++ +E L K+ ++ ++K D +D
Sbjct: 552 DTYIHRSGRTARASASGKSILICAPEETAGVTRLVAKVHHTHKRKASSKDPQLHSIHLDR 611
Query: 1289 SVLSLIKKRIDLAKSI-EYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ 1338
+++ ++ R L+K I E +K K + +WL AA+D+ + D E +
Sbjct: 612 GIVTRLRPRATLSKKITESTIAKEKISSETDWLRSAAEDLGVDYDSEEFAE 662
Score = 46.6 bits (109), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ H+ + P +A + GG+S KQ R L + ++V TPG
Sbjct: 251 ALILSPTRELAHQLVKHLKEVTSSAPNVDAYIASITGGLSVHKQQRQLAEA-DVIVGTPG 309
Query: 1413 AL 1414
L
Sbjct: 310 RL 311
>gi|406602865|emb|CCH45589.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 775
Score = 246 bits (628), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 182/532 (34%), Positives = 277/532 (52%), Gaps = 77/532 (14%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ W ++ ++ L F PT IQ +P DI+G A TGSGKTLA+GIP
Sbjct: 203 LPAWSNLDLSTYTLQGLSHLNFTKPTPIQKKCIPICSEGN-DIIGKASTGSGKTLAYGIP 261
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL +V+ L++P +F +I PTR
Sbjct: 262 ILERLVS-LKDP-----------------------------KFPA-------GVIFTPTR 284
Query: 887 ELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILN--KCPHILVATPGRLWEFI 941
ELA QV +H+ K+ P + + GG+S +KQ RIL I+VATPGR E I
Sbjct: 285 ELAHQVVDHLNKISKFFPSHQSSILSLTGGLSIQKQERILKYENSGQIIVATPGRFLELI 344
Query: 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR-QTFVFSATLT 1000
+ ++ + LV+DE DR+++ GHF E + IL ++ T Q + Q+ VFSAT
Sbjct: 345 ERNGEFAKKVSNLEILVLDEADRLLQDGHFDEFEQILKILSTNRTKQDKWQSLVFSATFA 404
Query: 1001 HSLKNSLNLKKGQSKSKKVSKGDPS---IKRLQDLLNI-KSPKIVDLTEKIGITKTLTES 1056
L + L + +G + SK D IK L + + K P+ +DL + +TE+
Sbjct: 405 VELFSKL-VHQGYKPKDEPSKLDEREQIIKILNEKIKFSKKPEFIDLNPNQKLANEITET 463
Query: 1057 KILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
+ C E+D YLYYF+L +PG TLVF N+I SVKRL L LK +H+SM Q+QR
Sbjct: 464 MVECLPAERDLYLYYFLLMYPGTTLVFTNAIDSVKRLVPYLNNLKIPTFAIHSSMLQKQR 523
Query: 1117 LKNLDRFRD--QNNS------ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
L ++++F++ NS +L+A+DVAARGLDIPGI+HVIHYH+PR++++YIHRSGRT
Sbjct: 524 LNSIEKFKESVSKNSDPNKPIVLIASDVAARGLDIPGIQHVIHYHLPRSADVYIHRSGRT 583
Query: 1169 ARANNEGLTLVLIESDEI--PLY------------IKMFNSLEKKVDLPDFPIDESVLSL 1214
AR+ EG+++++ E PL K ++ + D+ PI+ +++
Sbjct: 584 ARSGMEGISVMICSPQEASGPLRNLRKALSNDKTKFKGKSTKKWTKDVERLPIESDIVNQ 643
Query: 1215 IKKRIDLAKSIEYLESKIKK-NRPDNWLHRSGRTARANNEGLTLVLIESDEI 1265
+++R LA + E K + D+WL ++ A + + + +E DEI
Sbjct: 644 LRERSVLASQLADNEVSTKSLTKEDSWLKQA-----AEDLDIDMSDMEEDEI 690
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 178/551 (32%), Positives = 263/551 (47%), Gaps = 139/551 (25%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ W ++ ++ L F PT IQ +P DI+G A TGSGKTLA+GIP
Sbjct: 203 LPAWSNLDLSTYTLQGLSHLNFTKPTPIQKKCIPICSEGN-DIIGKASTGSGKTLAYGIP 261
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL +V+ L++P +F +I PTR
Sbjct: 262 ILERLVS-LKDP-----------------------------KFPA-------GVIFTPTR 284
Query: 270 ELAIQVQNHILDAGKYTPVKVACVV---GGMSTEKQLRILN--KCPHILVATPGRLWEFI 324
ELA QV +H+ K+ P + ++ GG+S +KQ RIL I+VATPGR E I
Sbjct: 285 ELAHQVVDHLNKISKFFPSHQSSILSLTGGLSIQKQERILKYENSGQIIVATPGRFLELI 344
Query: 325 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ ++ + LV+DE DR+++ GH F E
Sbjct: 345 ERNGEFAKKVSNLEILVLDEADRLLQDGH----------------------------FDE 376
Query: 385 LKNILDRVTMTETSQPR-QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL 443
+ IL ++ T Q + Q+ VFSAT L + L + +G + SK
Sbjct: 377 FEQILKILSTNRTKQDKWQSLVFSATFAVELFSKL-VHQGYKPKDEPSK----------- 424
Query: 444 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
L E+ I K L E K E FI +P + L EI
Sbjct: 425 ----------LDEREQIIKILNEKIKFSKKPE-------FIDLNPNQKLANEI------- 460
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
TE+ + C E+D YLYYF+L +PG TLVF N+I SVKRL
Sbjct: 461 -----------------TETMVECLPAERDLYLYYFLLMYPGTTLVFTNAIDSVKRLVPY 503
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQ--NNS------ILLATDVAARGLDIPGIEH 615
L LK +H+SM Q+QRL ++++F++ NS +L+A+DVAARGLDIPGI+H
Sbjct: 504 LNNLKIPTFAIHSSMLQKQRLNSIEKFKESVSKNSDPNKPIVLIASDVAARGLDIPGIQH 563
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI--PLKTKFNLQEEENNEEEE-R 672
VIHYH+PR++++YIHRSGRTAR+ EG++V++ E PL+ NL++ +N++ + +
Sbjct: 564 VIHYHLPRSADVYIHRSGRTARSGMEGISVMICSPQEASGPLR---NLRKALSNDKTKFK 620
Query: 673 AEADKEKTEDI 683
++ K+ T+D+
Sbjct: 621 GKSTKKWTKDV 631
Score = 47.0 bits (110), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILN--KCPHILVAT 1410
+I PTRELA QV +H+ K+ P + + GG+S +KQ RIL I+VAT
Sbjct: 277 GVIFTPTRELAHQVVDHLNKISKFFPSHQSSILSLTGGLSIQKQERILKYENSGQIIVAT 336
Query: 1411 PG 1412
PG
Sbjct: 337 PG 338
Score = 45.8 bits (107), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLY------------IKMFNSLEKKVDLPD 1283
D ++HRSGRTAR+ EG+++++ E PL K ++ + D+
Sbjct: 574 DVYIHRSGRTARSGMEGISVMICSPQEASGPLRNLRKALSNDKTKFKGKSTKKWTKDVER 633
Query: 1284 FPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDD 1333
PI+ +++ +++R LA + E K + D+WL++AA+D+DI + D
Sbjct: 634 LPIESDIVNQLRERSVLASQLADNEVSTKSLTKEDSWLKQAAEDLDIDMSD 684
>gi|323509857|dbj|BAJ77821.1| cgd8_190 [Cryptosporidium parvum]
Length = 781
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 198/602 (32%), Positives = 291/602 (48%), Gaps = 146/602 (24%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
I +I++ L + GF PT IQ+ + A+ RKDIVGAAETGSGKTLA+GIPI+ I+
Sbjct: 181 IHPSILKGLSELGFLNPTPIQAACLVPAIRDRKDIVGAAETGSGKTLAYGIPIIANIMFS 240
Query: 835 LENPTEE------DENDSGLEE-------EAEEVLEELEEESANTTEFVK---------- 871
+ E+ E D G EE E +E +ELE T
Sbjct: 241 AQRRREKLEQKSLKEYDDGFEEPDIQLGIEEDEGFKELERMGFKMTSVSNIDSKVSKNNS 300
Query: 872 -KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPH 928
K+ L ALI+ P+RELAIQV++H+ GKYT + + VGG+S EKQ R++ N+
Sbjct: 301 FKSDQALQALIVLPSRELAIQVRDHLRALGKYTGLGIHAFVGGLSLEKQERLIATNRV-Q 359
Query: 929 ILVATPGRLWEFIQLGHFHLTELY------------------KINYLVIDETDRMIESGH 970
+ V TPGRL I G + L+ ++ +LV+DE DR+IE GH
Sbjct: 360 VAVGTPGRLSALI-FGEYENETLFGDEREASRKQVNTTLSIDELRFLVLDEADRLIEQGH 418
Query: 971 FPELKNILDRVTM--TETSQPR--QTFVFSATLT-----HSLKNSLNLKKG--QSKSK-- 1017
F ELK IL + E+ PR Q ++FSATLT H + LN + QSK K
Sbjct: 419 FRELKQILQLIYSDNKESKTPRKIQNYLFSATLTLPNHLHPRFSKLNTRNTGKQSKGKKD 478
Query: 1018 ----KVSKGDP--SIKRLQ----------------DLLNIKSPKIVD--------LTEKI 1047
KV+ P S K +Q DL K+ ++D +++
Sbjct: 479 IQDNKVTSIMPENSNKAMQSIMQYVKLRENQLFIIDLSRFKTKSLLDENGEQVQTMSQPN 538
Query: 1048 GIT---KTLTESKILCKHDEKDSYLYYFILQH----------------------PGRTLV 1082
GI K L S I C+ DE + L ++L++ G+ LV
Sbjct: 539 GIIQLPKGLKISMIKCESDELEMRLVLYLLKYFAPIWDTKAGNQQCSLCPSYIENGKILV 598
Query: 1083 FCNSISSVKRLTQLLTML------------------KCSP---------LPLHASMNQRQ 1115
F NSIS V RL LL+++ KCS + +H +++Q+Q
Sbjct: 599 FVNSISYVYRLAPLLSLVLVCKDTHEKELPGPKKRKKCSKACNEKSLKIIGIHGNLSQKQ 658
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
R++ ++ F+ N++IL+ TDV ARGLDIP ++ V+H PR + IHRSGRTARA+ +G
Sbjct: 659 RIQAIESFKSSNSAILICTDVLARGLDIPEVDVVVHLQAPRNISLMIHRSGRTARASRQG 718
Query: 1176 LTLVLIESDEIPLYIKMFNSLE---KKVDLPD--FPIDESVLSLIKKRIDLAKSIEYLES 1230
++ ++P Y K ++ + V +PD + S +S +++R++LA IE L
Sbjct: 719 ECVLFCTPKDVPAYSKHLKAISLSFESVGIPDELQGLLSSQVSHVQQRLELANEIEGLGH 778
Query: 1231 KI 1232
I
Sbjct: 779 SI 780
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 183/601 (30%), Positives = 277/601 (46%), Gaps = 147/601 (24%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
I +I++ L + GF PT IQ+ + A+ RKDIVGAAETGSGKTLA+GIPI+ I+
Sbjct: 181 IHPSILKGLSELGFLNPTPIQAACLVPAIRDRKDIVGAAETGSGKTLAYGIPIIANIMFS 240
Query: 218 LENPTEE------DENDSGLEE-------EAEEVLEELEEESANTTEFVK---------- 254
+ E+ E D G EE E +E +ELE T
Sbjct: 241 AQRRREKLEQKSLKEYDDGFEEPDIQLGIEEDEGFKELERMGFKMTSVSNIDSKVSKNNS 300
Query: 255 -KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPH 311
K+ L ALI+ P+RELAIQV++H+ GKYT + + VGG+S EKQ R++ N+
Sbjct: 301 FKSDQALQALIVLPSRELAIQVRDHLRALGKYTGLGIHAFVGGLSLEKQERLIATNRV-Q 359
Query: 312 ILVATPGRLWEFIQLGHFHLTELY------------------KINYLVIDETDRMIESGH 353
+ V TPGRL I G + L+ ++ +LV+DE DR+IE G
Sbjct: 360 VAVGTPGRLSALI-FGEYENETLFGDEREASRKQVNTTLSIDELRFLVLDEADRLIEQG- 417
Query: 354 FPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT--ETSQPR--QTFVFSAT 409
HF ELK IL + E+ PR Q ++FSAT
Sbjct: 418 ---------------------------HFRELKQILQLIYSDNKESKTPRKIQNYLFSAT 450
Query: 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469
LT L N L+ + + ++ K K +QD K I+ + + K+
Sbjct: 451 LT--LPNHLHPRFSKLNTRNTGKQSKGKKDIQD---NKVTSIMPENSNKAMQSIMQYVKL 505
Query: 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT---KTLTESKIL 526
+++ L+ L + + LL+ ++ +++ GI K L S I
Sbjct: 506 ------RENQLFIIDLSRF------KTKSLLDENGEQVQTMSQPNGIIQLPKGLKISMIK 553
Query: 527 CKHDEKDSYLYYFILQH----------------------PGRTLVFCNSISSVKRLTQLL 564
C+ DE + L ++L++ G+ LVF NSIS V RL LL
Sbjct: 554 CESDELEMRLVLYLLKYFAPIWDTKAGNQQCSLCPSYIENGKILVFVNSISYVYRLAPLL 613
Query: 565 TML------------------KCSP---------LPLHASMNQRQRLKNLDRFRDQNNSI 597
+++ KCS + +H +++Q+QR++ ++ F+ N++I
Sbjct: 614 SLVLVCKDTHEKELPGPKKRKKCSKACNEKSLKIIGIHGNLSQKQRIQAIESFKSSNSAI 673
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKT 657
L+ TDV ARGLDIP ++ V+H PR + IHRSGRTARA+ +G V+ ++P +
Sbjct: 674 LICTDVLARGLDIPEVDVVVHLQAPRNISLMIHRSGRTARASRQGECVLFCTPKDVPAYS 733
Query: 658 K 658
K
Sbjct: 734 K 734
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPGA 1413
ALI+ P+RELAIQV++H+ GKYT + + VGG+S EKQ R++ N+ + V TPG
Sbjct: 309 ALIVLPSRELAIQVRDHLRALGKYTGLGIHAFVGGLSLEKQERLIATNRV-QVAVGTPGR 367
Query: 1414 LS 1415
LS
Sbjct: 368 LS 369
Score = 41.6 bits (96), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 1241 LHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE---KKVDLPD--FPIDESVLSLIK 1295
+HRSGRTARA+ +G ++ ++P Y K ++ + V +PD + S +S ++
Sbjct: 705 IHRSGRTARASRQGECVLFCTPKDVPAYSKHLKAISLSFESVGIPDELQGLLSSQVSHVQ 764
Query: 1296 KRIDLAKSIEYLESKI 1311
+R++LA IE L I
Sbjct: 765 QRLELANEIEGLGHSI 780
>gi|358335251|dbj|GAA53749.1| ATP-dependent RNA helicase DDX24/MAK5, partial [Clonorchis sinensis]
Length = 1334
Score = 241 bits (616), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 157/459 (34%), Positives = 250/459 (54%), Gaps = 63/459 (13%)
Query: 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-- 903
S L++ +E++ +E E ++ + N++Y L+L PTRELA+QV H+ ++
Sbjct: 649 SLLDDVSEQIAKEDRERFTSSEKPSSSLTNRVYGLVLLPTRELALQVHQHLRALAEFMDR 708
Query: 904 PVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETD 963
P ++ +VGG+S +KQ R+L P ILVATPGRLW FIQ GH H+ L +N LV+DE D
Sbjct: 709 PPRIEVIVGGISLQKQERLLRYNPDILVATPGRLWHFIQQGHPHVCTLRTMNILVVDEAD 768
Query: 964 RMIESGHFPELKNILDRVTMTETSQP------RQTFVFSATLTHSLKNSLNLKKGQSKSK 1017
R++E+ HF +L+ + + + S P RQT +FSATL + ++ ++K
Sbjct: 769 RLLEANHFEDLRQLFNWLNKHTASDPTKQRRKRQTLLFSATLAFVHQGAVKPGARSKQNK 828
Query: 1018 KVSKGDPSIKR-------LQDLLNI-KSPKIVDLTEKIGITKT--------------LTE 1055
+ + + K+ L+DLL + + K+ DL+ + +T L E
Sbjct: 829 RPAAANTLTKQLKLGKCALRDLLGMSQRAKVFDLSSADELHQTGDSENASGLVLPVGLRE 888
Query: 1056 SKILC-KHDEKDSYLYYFIL--QHPG-----RTLVFCNSISSVKRLTQLLTMLKC----- 1102
++LC KD L++F+ +H R L+F NS + V+RL +L L
Sbjct: 889 MRLLCPDQPSKDIRLFWFLAFGRHHSDMDNQRCLIFLNSKAGVRRLAGVLRQLVSVNAFS 948
Query: 1103 ----SPLP----LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP--------GI 1146
S + LHA M Q+QR + L+RF+ ILLA+DVAARGLD+ G+
Sbjct: 949 VGSRSGMQNVNILHADMMQKQRFRALERFQADRYGILLASDVAARGLDLATMDGSNASGV 1008
Query: 1147 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK-VDLPDF 1205
V+H+ VPRT+E+YIHR GRTARAN G +L+ + +E+PL+ ++ SL++ DLPD
Sbjct: 1009 AWVVHFEVPRTAELYIHRRGRTARANRFGTSLLFVCPEEMPLWRRLAISLKRSDPDLPDL 1068
Query: 1206 PIDESVLSLI--KKRIDLAKSIEYLE-SKIKKNRPDNWL 1241
+ S L+ +K + LAK ++ E S +++ ++W
Sbjct: 1069 ASEPSHFQLVACEKIVSLAKQLDLAEHSAVRRAANEDWF 1107
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 145/473 (30%), Positives = 226/473 (47%), Gaps = 117/473 (24%)
Query: 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-- 286
S L++ +E++ +E E ++ + N++Y L+L PTRELA+QV H+ ++
Sbjct: 649 SLLDDVSEQIAKEDRERFTSSEKPSSSLTNRVYGLVLLPTRELALQVHQHLRALAEFMDR 708
Query: 287 PVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETD 346
P ++ +VGG+S +KQ R+L P ILVATPGRLW FIQ GH H+ L +N LV+DE D
Sbjct: 709 PPRIEVIVGGISLQKQERLLRYNPDILVATPGRLWHFIQQGHPHVCTLRTMNILVVDEAD 768
Query: 347 RMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406
R++E+ HF +L+ + + + S P T+ + RQT +F
Sbjct: 769 RLLEANHFEDLRQLFNWLNKHTASDP----------------------TKQRRKRQTLLF 806
Query: 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR-------LQDLLNI-KSPKIVDLTEKI 458
SATL + ++ ++K+ + + K+ L+DLL + + K+ DL+
Sbjct: 807 SATLAFVHQGAVKPGARSKQNKRPAAANTLTKQLKLGKCALRDLLGMSQRAKVFDLSSAD 866
Query: 459 GITKT--------------LTESKILC-KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
+ +T L E ++LC KD L++F+ GR
Sbjct: 867 ELHQTGDSENASGLVLPVGLREMRLLCPDQPSKDIRLFWFLAF--GR------------- 911
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
H + D+ R L+F NS + V+RL +
Sbjct: 912 ------------------------HHSDMDNQ----------RCLIFLNSKAGVRRLAGV 937
Query: 564 LTMLKC---------SPLP----LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610
L L S + LHA M Q+QR + L+RF+ ILLA+DVAARGLD+
Sbjct: 938 LRQLVSVNAFSVGSRSGMQNVNILHADMMQKQRFRALERFQADRYGILLASDVAARGLDL 997
Query: 611 P--------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
G+ V+H+ VPRT+E+YIHR GRTARAN G +++ + +E+PL
Sbjct: 998 ATMDGSNASGVAWVVHFEVPRTAELYIHRRGRTARANRFGTSLLFVCPEEMPL 1050
Score = 63.5 bits (153), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 62/99 (62%), Gaps = 4/99 (4%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK-VDLPDFPIDESVLSLI--KK 1296
++HR GRTARAN G +L+ + +E+PL+ ++ SL++ DLPD + S L+ +K
Sbjct: 1023 YIHRRGRTARANRFGTSLLFVCPEEMPLWRRLAISLKRSDPDLPDLASEPSHFQLVACEK 1082
Query: 1297 RIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDE 1334
+ LAK ++ E S +++ ++W + AK++DI +D +
Sbjct: 1083 IVSLAKQLDLAEHSAVRRAANEDWFRQVAKEVDIELDSD 1121
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYT--PVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
L+L PTRELA+QV H+ ++ P ++ +VGG+S +KQ R+L P ILVATPG
Sbjct: 682 GLVLLPTRELALQVHQHLRALAEFMDRPPRIEVIVGGISLQKQERLLRYNPDILVATPGR 741
Query: 1414 L 1414
L
Sbjct: 742 L 742
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
V M W +PE II AL + F TPT IQ V+PSA+ R DI GAA T
Sbjct: 489 VSMEVWRNLFVPEDIITALGKLNFTTPTPIQLCVLPSAIRDRSDISGAAPT 539
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
V M W +PE II AL + F TPT IQ V+PSA+ R DI GAA T
Sbjct: 489 VSMEVWRNLFVPEDIITALGKLNFTTPTPIQLCVLPSAIRDRSDISGAAPT 539
>gi|429852313|gb|ELA27456.1| ATP-dependent rRNA helicase rrp3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 476
Score = 240 bits (612), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 152/480 (31%), Positives = 250/480 (52%), Gaps = 85/480 (17%)
Query: 761 EDMFVQMAEWVK----FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
ED+ AE K I ++++ A + G+ PT IQ+ +P AL R D++G AETG
Sbjct: 42 EDVTANKAESAKTFKDLGIVDSLVEACDRLGYTNPTPIQAQSIPHALQNR-DVIGLAETG 100
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
SGKT AF +PI+ +++K P+
Sbjct: 101 SGKTAAFALPIIQALLDK---PSH------------------------------------ 121
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L+ L+LAPTRELA Q+ G ++VA +VGG+ Q L K PHI+VATPGR
Sbjct: 122 LFGLVLAPTRELAAQIAASFEALGSLVNLRVAVIVGGLDMVAQAIALGKKPHIVVATPGR 181
Query: 937 LWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
L + H T+ L + YLV+DE DR+++ P + IL + + R+TF
Sbjct: 182 LVD-----HLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFI-----PRERRTF 231
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT-KT 1052
+FSAT++ ++ S++R +++ P + ++ T T
Sbjct: 232 LFSATMSSKIE--------------------SLQRA----SLRDPVRISISSSSHQTVST 267
Query: 1053 LTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
L ++ I C H++KD+YL Y + ++ G+ +V F +++ +RL LL L +P+H +
Sbjct: 268 LIQNYIFCPHNKKDTYLVYLVNEYSGKKIVLFTRTVTETQRLAILLRTLGFGAIPIHGQL 327
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
NQ RL L++FR + IL+ATDVAARGLDIP ++ VI++ +P S+ Y+HR GRTARA
Sbjct: 328 NQTARLGALNKFRAGSRDILVATDVAARGLDIPLVDVVINFDIPSDSKTYVHRVGRTARA 387
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
G + ++ ++ +Y+++ +L KK LP++P + + + + R++ A+ + +E K
Sbjct: 388 GKSGKAITIMTQYDLEIYLRIEAALGKK--LPEYPTQKDEVDVFQTRVEEAQRVARIEMK 445
Score = 193 bits (490), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 145/513 (28%), Positives = 225/513 (43%), Gaps = 165/513 (32%)
Query: 144 EDMFVQMAEWVK----FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
ED+ AE K I ++++ A + G+ PT IQ+ +P AL R D++G AETG
Sbjct: 42 EDVTANKAESAKTFKDLGIVDSLVEACDRLGYTNPTPIQAQSIPHALQNR-DVIGLAETG 100
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKT AF +PI+ +++K P+
Sbjct: 101 SGKTAAFALPIIQALLDK---PSH------------------------------------ 121
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L+ L+LAPTRELA Q+ G ++VA +VGG+ Q L K PHI+VATPGR
Sbjct: 122 LFGLVLAPTRELAAQIAASFEALGSLVNLRVAVIVGGLDMVAQAIALGKKPHIVVATPGR 181
Query: 320 LWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
L + H T+ L + YLV+DE DR+++ P + IL + PR+
Sbjct: 182 LVD-----HLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFI-------PRE-- 227
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
R+TF+FSAT++ ++ S
Sbjct: 228 ------------------------RRTFLFSATMSSKIE--------------------S 243
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
++R +++ P + ++ T TL ++ I C H++KD+YL Y + ++ G+
Sbjct: 244 LQR----ASLRDPVRISISSSSHQTVSTLIQNYIFCPHNKKDTYLVYLVNEYSGK----- 294
Query: 496 IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555
KIV +F +++
Sbjct: 295 ----------KIV----------------------------------------LFTRTVT 304
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615
+RL LL L +P+H +NQ RL L++FR + IL+ATDVAARGLDIP ++
Sbjct: 305 ETQRLAILLRTLGFGAIPIHGQLNQTARLGALNKFRAGSRDILVATDVAARGLDIPLVDV 364
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
VI++ +P S+ Y+HR GRTARA G + ++
Sbjct: 365 VINFDIPSDSKTYVHRVGRTARAGKSGKAITIM 397
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
L+LAPTRELA Q+ G ++VA +VGG+ Q L K PHI+VATPG L
Sbjct: 124 GLVLAPTRELAAQIAASFEALGSLVNLRVAVIVGGLDMVAQAIALGKKPHIVVATPGRLV 183
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
K L +S++YL + D L DMD + +++ R L
Sbjct: 184 DHLEKTKGFSL-RSLKYL----VMDEADRLL-----DMDFGPSIDKILKFIPRERRTFLF 233
Query: 1471 SKALVSKRKELQ 1482
S + SK + LQ
Sbjct: 234 SATMSSKIESLQ 245
Score = 44.3 bits (103), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
++HR GRTARA G + ++ ++ +Y+++ +L KK LP++P + + + + R+
Sbjct: 376 TYVHRVGRTARAGKSGKAITIMTQYDLEIYLRIEAALGKK--LPEYPTQKDEVDVFQTRV 433
Query: 1299 DLAKSIEYLESK 1310
+ A+ + +E K
Sbjct: 434 EEAQRVARIEMK 445
>gi|194378094|dbj|BAG57797.1| unnamed protein product [Homo sapiens]
Length = 487
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 156/209 (74%), Gaps = 1/209 (0%)
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 1097
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL
Sbjct: 176 PKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLL 235
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 236 KVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 295
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217
SEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+
Sbjct: 296 SEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKE 355
Query: 1218 RIDLAKSIEYLESK-IKKNRPDNWLHRSG 1245
RI LA+ IE E + + ++W+ ++
Sbjct: 356 RIRLARQIEKSEYRNFQACLHNSWIEQAA 384
Score = 209 bits (533), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 121/149 (81%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL
Sbjct: 176 PKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLL 235
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 236 KVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 295
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
SEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 296 SEIYVHRSGRTARATNEGLSLMLIGPEDV 324
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI
Sbjct: 299 YVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIR 358
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDE 1334
LA+ IE E + + ++W+E+AA ++I ++++
Sbjct: 359 LARQIEKSEYRNFQACLHNSWIEQAAAALEIELEED 394
>gi|3776003|emb|CAA09204.1| RNA helicase [Arabidopsis thaliana]
Length = 451
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 201/336 (59%), Gaps = 24/336 (7%)
Query: 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET-- 986
I+VATPGRLWE + G HL EL+ +++ V+DE DRM+E GHF EL++ILD + +T+
Sbjct: 2 IVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPN 61
Query: 987 -----------------SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKR 1028
+ RQTFVFSAT+ S LK+G SKSK+ S G+ SI+
Sbjct: 62 EGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEV 121
Query: 1029 LQDLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNS 1086
L + ++ + I+DLT + + ES I C+ EKD+YLYY + H GRT+VFC S
Sbjct: 122 LSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTS 181
Query: 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 1146
++ ++ ++ LL +L L + M QR RLK++DRFR N IL+ATD+ ARG+DI +
Sbjct: 182 VTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNV 241
Query: 1147 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206
+IHY +P ++E+Y+HR GRTARA +G ++ LIE +E + + S + + FP
Sbjct: 242 RTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSME-SVKIFP 300
Query: 1207 IDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
+D S + ++KR+ LA+ I ++ K + D WL
Sbjct: 301 LDNSYMPAVRKRLYLARQIYEIDRKGSRENADRTWL 336
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 124/342 (36%), Positives = 184/342 (53%), Gaps = 64/342 (18%)
Query: 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 371
I+VATPGRLWE + G HL EL+ +++ V+DE DRM+E GHF EL++ILD + +T+ +
Sbjct: 2 IVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTD--K 59
Query: 372 PRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 431
P + G +K+ + + + RQTFVFSAT+ S LK+G SKSK+ S
Sbjct: 60 PNE-----GKTQTVKS--NDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSS 112
Query: 432 KGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
G+ + I L+E+ G+ +
Sbjct: 113 SGEVN-------------SIEVLSERAGMRDNVA-------------------------- 133
Query: 492 LCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVF 550
I+DLT + + ES I C+ EKD+YLYY + H GRT+VF
Sbjct: 134 ---------------IIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVF 178
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610
C S++ ++ ++ LL +L L + M QR RLK++DRFR N IL+ATD+ ARG+DI
Sbjct: 179 CTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDI 238
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+ +IHY +P ++E+Y+HR GRTARA +G ++ LIE +E
Sbjct: 239 KNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNE 280
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA +G ++ LIE +E + + S + + FP+D S + ++KR+
Sbjct: 256 YVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSME-SVKIFPLDNSYMPAVRKRLY 314
Query: 1300 LAKSIEYLESKIKKNRPD-NWLEKAAKDM 1327
LA+ I ++ K + D WL+K A+ M
Sbjct: 315 LARQIYEIDRKGSRENADRTWLKKHAESM 343
>gi|255554328|ref|XP_002518204.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223542800|gb|EEF44337.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 496
Score = 237 bits (605), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/344 (40%), Positives = 200/344 (58%), Gaps = 41/344 (11%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + +++++Y+ GFK PT IQ +P A KD++GAAETGSGKTLAFG+PIL
Sbjct: 161 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPPAAHQGKDVIGAAETGSGKTLAFGLPILQ 220
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ E D+ + L+E EE E T ++ ALI+ PTRELA
Sbjct: 221 RLLE------ERDKAANYLDEMGEEA------EKYGPTGLLR-------ALIITPTRELA 261
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+QV +H+ +A +KV +VGGMSTEKQ R+L P I+V TPGRLWE + G HL
Sbjct: 262 LQVTDHLKEAAMGINIKVVPIVGGMSTEKQERLLKARPEIIVGTPGRLWELMSGGESHLV 321
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS-------------------QPR 990
EL+ +++ V+DE DRMIE+GHF EL++I+D + M S + R
Sbjct: 322 ELHSLSFFVLDEADRMIENGHFRELQSIIDMLPMASGSVEGLSQNTQNCVTLSNLQRKKR 381
Query: 991 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSK-GDPSIKRLQDLLNIK-SPKIVDLTEKIG 1048
QTFVFSAT+ S LK+G K K+++ G SI+ L + ++ + I+DLT
Sbjct: 382 QTFVFSATIALSTDFRKKLKRGSLKPKQLTADGLNSIENLSERAGMRPNAAIIDLTNASI 441
Query: 1049 ITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVK 1091
+ L ES I C+ D+KD+YLYY + + RT+VFC SI++++
Sbjct: 442 LAHKLEESFIECREDDKDAYLYYILSVSWTSRTIVFCTSIAALR 485
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/336 (40%), Positives = 196/336 (58%), Gaps = 34/336 (10%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + + +++++Y+ GFK PT IQ +P A KD++GAAETGSGKTLAFG+PIL
Sbjct: 161 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPPAAHQGKDVIGAAETGSGKTLAFGLPILQ 220
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ E D+ + L+E EE E T ++ ALI+ PTRELA
Sbjct: 221 RLLE------ERDKAANYLDEMGEEA------EKYGPTGLLR-------ALIITPTRELA 261
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+QV +H+ +A +KV +VGGMSTEKQ R+L P I+V TPGRLWE + G HL
Sbjct: 262 LQVTDHLKEAAMGINIKVVPIVGGMSTEKQERLLKARPEIIVGTPGRLWELMSGGESHLV 321
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL-KNILDR 391
EL+ +++ V+DE DRMIE+GHF EL++I+D + M SG L +N +
Sbjct: 322 ELHSLSFFVLDEADRMIENGHFRELQSIIDMLPMA-----------SGSVEGLSQNTQNC 370
Query: 392 VTMTETSQ-PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK-GDPSIKRLQDLLNIK-S 448
VT++ + RQTFVFSAT+ S LK+G K K+++ G SI+ L + ++ +
Sbjct: 371 VTLSNLQRKKRQTFVFSATIALSTDFRKKLKRGSLKPKQLTADGLNSIENLSERAGMRPN 430
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484
I+DLT + L ES I C+ D+KD+YLYY +
Sbjct: 431 AAIIDLTNASILAHKLEESFIECREDDKDAYLYYIL 466
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV +H+ +A +KV +VGGMSTEKQ R+L P I+V TPG L
Sbjct: 251 ALIITPTRELALQVTDHLKEAAMGINIKVVPIVGGMSTEKQERLLKARPEIIVGTPGRL 309
>gi|209876618|ref|XP_002139751.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209555357|gb|EEA05402.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 817
Score = 236 bits (601), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 199/631 (31%), Positives = 291/631 (46%), Gaps = 160/631 (25%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV-- 832
I +I++ + + GF +PTK+Q M + A+ RKDI+ AETGSGKTLA+GIPIL I+
Sbjct: 151 IHPSILKGIEKLGFFSPTKVQEMCLIPAIRDRKDIIATAETGSGKTLAYGIPILVNIMFT 210
Query: 833 -----NKLE------NPTEE-----------------DENDSGLEEEAEEVLEELEEESA 864
KLE N E+ D ND+ EE ++ L L+E
Sbjct: 211 EQRRREKLETKSLKFNSLEDKYINNSIDDTDYFEKILDSNDNENNEEVDDTLVTLKELGF 270
Query: 865 NTTEF---VKKTRNKLY-------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGM 914
TE ++ +N+ Y ALI+ P+RELA+QV++H+ G +T + + VGG
Sbjct: 271 KITEISGDIELDKNEFYEIDKPLQALIILPSRELALQVRDHLRAVGHFTGLGIHAFVGGF 330
Query: 915 STEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHLTELYK---------------INYL 957
S EKQ R++ NK I V TPGRL + I L ++ + ++ K + +L
Sbjct: 331 SIEKQERLIIQNKV-QIAVGTPGRLADLI-LNNYKIEDIGKSELERKMNKILSIEYLRFL 388
Query: 958 VIDETDRMIESGHFPELKNILDRVTMTETSQ------PRQTFVFSATLT--HSLKNSLNL 1009
V+DE DR++E GH+ ELK ILD + E Q P QT++FSATL L +L
Sbjct: 389 VLDEADRLVEQGHYKELKLILDNI-YEENGQKKKFRKPIQTYIFSATLNLPDKLHPRFSL 447
Query: 1010 KKGQSKSKKVSKGDPSI---------KRLQDLL--------------------------N 1034
KK +K K K + I K +Q +L N
Sbjct: 448 KKNNNKHTKDGKNNDQINSDLIGNTGKAMQSILQYIKLQNDKVFVVDLSRFKISYNKDEN 507
Query: 1035 I-KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH----------------- 1076
I ++ K V T I I K L I C +++ L ++L +
Sbjct: 508 IDENHKYVQSTSAIHIPKGLMIYMIRCDELDREMRLVMYLLAYFTPKWNYKLKDEKESNC 567
Query: 1077 -------PGRTLVFCNSISSV------------------KRLTQLLTMLKCSP------- 1104
G+ L+F NSIS V K+ T KC+
Sbjct: 568 TNCAICNKGKILLFVNSISYVYRLLPLLPLVLLGNDIHLKKFTGNFKRPKCNYNCKDSLK 627
Query: 1105 -LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
L +H +++Q+QR+K L++FR N++IL+ TDV ARGLDIP +E VIH PR + + IH
Sbjct: 628 ILGIHGNISQKQRVKTLEQFRYSNSAILICTDVLARGLDIPDVEVVIHLQPPRNASLMIH 687
Query: 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-----IDESVLSLIKKR 1218
RSGRTARA G ++ ++PLY K ++ + + P I +S I+ R
Sbjct: 688 RSGRTARATKTGECVLFCTPKDVPLYTKYLRAISQSYESIAAPYQISNITSFHISHIQNR 747
Query: 1219 IDLAKSIEYLES-KIKKNRPDNWLHRSGRTA 1248
+ LA IE L KK + NW+ + A
Sbjct: 748 LALAIEIENLGHLFFKKKKSMNWMIEMAKEA 778
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 191/613 (31%), Positives = 283/613 (46%), Gaps = 158/613 (25%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV-- 215
I +I++ + + GF +PTK+Q M + A+ RKDI+ AETGSGKTLA+GIPIL I+
Sbjct: 151 IHPSILKGIEKLGFFSPTKVQEMCLIPAIRDRKDIIATAETGSGKTLAYGIPILVNIMFT 210
Query: 216 -----NKLE------NPTEE-----------------DENDSGLEEEAEEVLEELEEESA 247
KLE N E+ D ND+ EE ++ L L+E
Sbjct: 211 EQRRREKLETKSLKFNSLEDKYINNSIDDTDYFEKILDSNDNENNEEVDDTLVTLKELGF 270
Query: 248 NTTEF---VKKTRNKLY-------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGM 297
TE ++ +N+ Y ALI+ P+RELA+QV++H+ G +T + + VGG
Sbjct: 271 KITEISGDIELDKNEFYEIDKPLQALIILPSRELALQVRDHLRAVGHFTGLGIHAFVGGF 330
Query: 298 STEKQLRIL--NKCPHILVATPGRLWEFIQLGHFHLTELYK---------------INYL 340
S EKQ R++ NK I V TPGRL + I L ++ + ++ K + +L
Sbjct: 331 SIEKQERLIIQNKV-QIAVGTPGRLADLI-LNNYKIEDIGKSELERKMNKILSIEYLRFL 388
Query: 341 VIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ- 399
V+DE DR++E GH + ELK ILD + E Q
Sbjct: 389 VLDEADRLVEQGH----------------------------YKELKLILDNI-YEENGQK 419
Query: 400 -----PRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPSI---------KRLQDL 443
P QT++FSATL L +LKK +K K K + I K +Q +
Sbjct: 420 KKFRKPIQTYIFSATLNLPDKLHPRFSLKKNNNKHTKDGKNNDQINSDLIGNTGKAMQSI 479
Query: 444 LN---IKSPKI--VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL------ 492
L +++ K+ VDL+ + I+ E+ DE Y+ H + L
Sbjct: 480 LQYIKLQNDKVFVVDLS-RFKISYNKDENI-----DENHKYVQSTSAIHIPKGLMIYMIR 533
Query: 493 CEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 552
C+E+ + + + T K DEK+S + + G+ L+F N
Sbjct: 534 CDELDREMRLVMYLLAYFTPKWNYKLK----------DEKESNCTNCAICNKGKILLFVN 583
Query: 553 SISSV------------------KRLTQLLTMLKCSP--------LPLHASMNQRQRLKN 586
SIS V K+ T KC+ L +H +++Q+QR+K
Sbjct: 584 SISYVYRLLPLLPLVLLGNDIHLKKFTGNFKRPKCNYNCKDSLKILGIHGNISQKQRVKT 643
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
L++FR N++IL+ TDV ARGLDIP +E VIH PR + + IHRSGRTARA G V+
Sbjct: 644 LEQFRYSNSAILICTDVLARGLDIPDVEVVIHLQPPRNASLMIHRSGRTARATKTGECVL 703
Query: 647 LIESDEIPLKTKF 659
++PL TK+
Sbjct: 704 FCTPKDVPLYTKY 716
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL--NKCPHILVATPGA 1413
ALI+ P+RELA+QV++H+ G +T + + VGG S EKQ R++ NK I V TPG
Sbjct: 295 ALIILPSRELALQVRDHLRAVGHFTGLGIHAFVGGFSIEKQERLIIQNKV-QIAVGTPGR 353
Query: 1414 LS 1415
L+
Sbjct: 354 LA 355
Score = 49.3 bits (116), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 1241 LHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-----IDESVLSLIK 1295
+HRSGRTARA G ++ ++PLY K ++ + + P I +S I+
Sbjct: 686 IHRSGRTARATKTGECVLFCTPKDVPLYTKYLRAISQSYESIAAPYQISNITSFHISHIQ 745
Query: 1296 KRIDLAKSIEYLES-KIKKNRPDNWLEKAAKDMDIIIDDE 1334
R+ LA IE L KK + NW+ + AK+ D+ + DE
Sbjct: 746 NRLALAIEIENLGHLFFKKKKSMNWMIEMAKEADLELSDE 785
>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
Length = 448
Score = 236 bits (601), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 163/471 (34%), Positives = 239/471 (50%), Gaps = 77/471 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 24 LGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGR-DIIGLAETGSGKTGAFALPILQTL- 81
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE+P +LYAL+L PTRELA Q+
Sbjct: 82 --LESP------------------------------------QRLYALVLTPTRELAFQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G VK A +VGG+ Q L K PHI++ATPGRL + L + L
Sbjct: 104 SEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKKPHIVIATPGRLID--HLENTKGFNLR 161
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
I YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 162 AIKYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT------------ 204
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
KKV K ++R +K P ++ K + L + + KDSYL Y
Sbjct: 205 ----KKVHK----LQRAA----LKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYI 252
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G + ++FC++ ++ +R+ LL L + +PLH M Q +RL L++F+ ++ SIL
Sbjct: 253 LNELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKSRSIL 312
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
LATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G + + ++ L+ +
Sbjct: 313 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQR 372
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK---SIEYLESKIKKNRPDN 1239
+ + + KK LP FP E + ++ +R+ A+ IE E KK RP N
Sbjct: 373 IEHLIGKK--LPAFPTQEEEVMMLNERVSEAQRFARIELREHGEKKKRPRN 421
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 160/552 (28%), Positives = 232/552 (42%), Gaps = 166/552 (30%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 24 LGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGR-DIIGLAETGSGKTGAFALPILQTL- 81
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE+P +LYAL+L PTRELA Q+
Sbjct: 82 --LESP------------------------------------QRLYALVLTPTRELAFQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G VK A +VGG+ Q L K PHI++ATPGRL + L + L
Sbjct: 104 SEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKKPHIVIATPGRLID--HLENTKGFNLR 161
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
I YLV+DE DR++ E+ IL + PR
Sbjct: 162 AIKYLVMDEADRILNMDFETEVDKILKVI-------PRD--------------------- 193
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+TF+FSAT+T KKV K ++R +K P ++
Sbjct: 194 -----RKTFLFSATMT----------------KKVHK----LQRAA----LKDPVKCAVS 224
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K + L + + KDSYL Y + + G
Sbjct: 225 SKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAG-------------------------- 258
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+S++ + C++ ++ +R+ LL L + +PLH
Sbjct: 259 -----------------NSFMIF------------CSTCNNTQRVALLLRNLGFTAIPLH 289
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M Q +RL L++F+ ++ SILLATDVA+RGLDIP ++ VI++ +P S+ YIHR GRT
Sbjct: 290 GQMGQNKRLGALNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRT 349
Query: 636 ARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEERAEADKEKTEDIN 684
ARA G + + ++ L + F QEEE ER ++ ++ I
Sbjct: 350 ARAGRSGKAITFVSQYDVELFQRIEHLIGKKLPAFPTQEEEVMMLNERV-SEAQRFARIE 408
Query: 685 VTVSSKKKKLKR 696
+ +KKK R
Sbjct: 409 LREHGEKKKRPR 420
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G VK A +VGG+ Q L K PHI++ATPG L
Sbjct: 90 ALVLTPTRELAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKKPHIVIATPGRL 148
Score = 47.0 bits (110), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP E + ++ +R+
Sbjct: 341 DYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIGKK--LPAFPTQEEEVMMLNERV 398
Query: 1299 DLAK---SIEYLESKIKKNRPDN 1318
A+ IE E KK RP N
Sbjct: 399 SEAQRFARIELREHGEKKKRPRN 421
>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
Length = 446
Score = 235 bits (600), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 155/458 (33%), Positives = 240/458 (52%), Gaps = 74/458 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+KTP+KIQ +P AL KD++G AETGSGKT AF +PIL +
Sbjct: 19 LGVVDALCEACKQLGWKTPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILQAL- 76
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
L+NP +L+ALIL PTRELA Q+
Sbjct: 77 --LDNP------------------------------------QRLFALILTPTRELAFQI 98
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G VK A +VGG+ Q +L K PHI++ATPGRL + L + L
Sbjct: 99 SEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKKPHIIIATPGRLID--HLENTKGFSLR 156
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ YLV+DE DR++ E+ +L + + R+TF+FSAT+T
Sbjct: 157 TLKYLVMDEADRILNMDFEKEVDKLLKVI-----PKERRTFLFSATMT------------ 199
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
KKV K ++R ++++P V++ K + L +S + KD YL Y
Sbjct: 200 ----KKVQK----LQRA----SLQAPVKVEVATKYQTVEKLQQSYLFIPSKFKDCYLVYV 247
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G + +VFC + ++V+R+T +L L +PLH M+Q +RL L++F+ ++ SIL
Sbjct: 248 LNELAGNSFMVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSIL 307
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++ LY +
Sbjct: 308 VATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQR 367
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
+ + + KK LP +P E + L+ +R+ A+ +E
Sbjct: 368 IEHLIAKK--LPQYPTVEEEVMLLMERVTEAQRYARME 403
Score = 190 bits (482), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 145/500 (29%), Positives = 221/500 (44%), Gaps = 154/500 (30%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+KTP+KIQ +P AL KD++G AETGSGKT AF +PIL +
Sbjct: 19 LGVVDALCEACKQLGWKTPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILQAL- 76
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
L+NP +L+ALIL PTRELA Q+
Sbjct: 77 --LDNP------------------------------------QRLFALILTPTRELAFQI 98
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G VK A +VGG+ Q +L K PHI++ATPGRL + L + L
Sbjct: 99 SEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKKPHIIIATPGRLID--HLENTKGFSLR 156
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR++ E+ +L + P++
Sbjct: 157 TLKYLVMDEADRILNMDFEKEVDKLLKVI-------PKE--------------------- 188
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+TF+FSAT+T KKV K ++R ++++P V++
Sbjct: 189 -----RRTFLFSATMT----------------KKVQK----LQR----ASLQAPVKVEVA 219
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K + L +S + KD YL Y + + G
Sbjct: 220 TKYQTVEKLQQSYLFIPSKFKDCYLVYVLNELAG-------------------------- 253
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+S++ + C + ++V+R+T +L L +PLH
Sbjct: 254 -----------------NSFMVF------------CGTCNNVQRVTLMLRNLGLDAVPLH 284
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M+Q +RL L++F+ ++ SIL+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRT
Sbjct: 285 GQMSQSKRLGALNKFKSKSRSILVATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRT 344
Query: 636 ARANNEGLTVVLIESDEIPL 655
ARA G +V + ++ L
Sbjct: 345 ARAGRSGRSVTFVTQYDVEL 364
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA Q+ G VK A +VGG+ Q +L K PHI++ATPG L
Sbjct: 85 ALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKKPHIIIATPGRL 143
Score = 42.0 bits (97), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ LY ++ + + KK LP +P E + L+ +R+
Sbjct: 336 DYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIEHLIAKK--LPQYPTVEEEVMLLMERV 393
Query: 1299 DLAKSIEYLE 1308
A+ +E
Sbjct: 394 TEAQRYARME 403
>gi|74141078|dbj|BAE22104.1| unnamed protein product [Mus musculus]
Length = 622
Score = 235 bits (600), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/273 (46%), Positives = 174/273 (63%), Gaps = 6/273 (2%)
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 901
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 353 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 412
Query: 902 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVIDE
Sbjct: 413 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDE 472
Query: 962 TDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKV 1019
DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK KK+
Sbjct: 473 ADRMVEKGHFAELSQLLEMLNDSQYNPSRQTLVFSATLTLVHQAPARILHKK---HVKKM 529
Query: 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 1079
K D +Q + PK++DLT G +TLTE+KI C+ DEKD YLYYF++Q+PGR
Sbjct: 530 DKTDKLDLLMQKVGMRGKPKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFLMQYPGR 589
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
+LVF NSIS +KRL+ LL +L PL LHA M+
Sbjct: 590 SLVFANSISCIKRLSGLLKVLDVMPLTLHACMH 622
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 130/357 (36%), Positives = 178/357 (49%), Gaps = 90/357 (25%)
Query: 226 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 284
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 353 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 412
Query: 285 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVIDE
Sbjct: 413 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDE 472
Query: 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404
DRM+E G HF EL +L+ + ++ + RQT
Sbjct: 473 ADRMVEKG----------------------------HFAELSQLLEMLNDSQYNPSRQTL 504
Query: 405 VFSAT--LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
VFSAT L H + KK KK+ K D K+ L +K+G+
Sbjct: 505 VFSATLTLVHQAPARILHKK---HVKKMDKTD---------------KLDLLMQKVGMRG 546
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
PK++DLT G +TLTE
Sbjct: 547 -----------------------------------------KPKVIDLTRNEGTVETLTE 565
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 579
+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+
Sbjct: 566 TKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMH 622
Score = 74.7 bits (182), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 390 GLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 448
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 187 DQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 246
Query: 205 AFGIPILTGIV--NKLENP 221
AF IP++ ++ +K++ P
Sbjct: 247 AFAIPMIHSVLQWHKMKAP 265
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 187 DQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 246
Query: 822 AFGIPILTGIV--NKLENP 838
AF IP++ ++ +K++ P
Sbjct: 247 AFAIPMIHSVLQWHKMKAP 265
>gi|430812989|emb|CCJ29627.1| unnamed protein product [Pneumocystis jirovecii]
Length = 625
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 167/481 (34%), Positives = 251/481 (52%), Gaps = 79/481 (16%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ EW KF + + +++ L F +PT IQ M +PS ++ K ++ AETGSGK + P
Sbjct: 127 LPEWTKFGLSDIVLKNLSSLSFLSPTHIQKMTIPS-IIEGKSVIAKAETGSGKNIGIRDP 185
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
+ PT E
Sbjct: 186 NI---------PTRE--------------------------------------------- 191
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
LA Q+ NH+ K++ + + ++GG+S ++Q R+ LWE I ++
Sbjct: 192 -LAHQIMNHLESISKFSSIFIIAIIGGLSVQRQERL--------------LWEIINQNNY 236
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
LT L K+ +LV+DE DR+++ GHF EL+ IL+ + + RQ VFSAT SL+
Sbjct: 237 FLTMLSKVRFLVLDEADRLLQEGHFKELEKILNFLKRYKIQ--RQVLVFSATFKKSLQKK 294
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNI-KSPKIVDLTEKIGITKTLTESKILCKHDEK 1065
+ + + K + + I+ LN K K +D + I K + E I CK +K
Sbjct: 295 I---ENSNFFKTNTSTEDEIELFFKKLNFGKEMKFIDANPQENIPKKIKEGIIECKDTDK 351
Query: 1066 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
D YLYYF+L++PGRT+VF NSI V R+ +L L PL LH+ + Q+QRLK +++F +
Sbjct: 352 DLYLYYFLLKYPGRTIVFMNSIEHVHRIVPILNELNLKPLSLHSQLRQKQRLKVIEKFNN 411
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+ SIL+ +D+AARG+DI I+HVIHYH+PR+ ++YIHRSGRTARA N G+ ++L E
Sbjct: 412 E-ISILITSDIAARGIDISEIDHVIHYHLPRSVDLYIHRSGRTARAENSGVAVLLCTPTE 470
Query: 1186 IPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRS 1244
+ KM SLEK +D + FPID S+L +K RI L K I + K + +NWL +
Sbjct: 471 TIKFRKMLFSLEKSIDEILFFPIDYSLLKKLKPRIYLGKKITDAMHYLNK-QNNNWLKEA 529
Query: 1245 G 1245
Sbjct: 530 A 530
Score = 163 bits (412), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 141/499 (28%), Positives = 218/499 (43%), Gaps = 161/499 (32%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ EW KF + + +++ L F +PT IQ M +PS ++ K ++ AETGSGK + P
Sbjct: 127 LPEWTKFGLSDIVLKNLSSLSFLSPTHIQKMTIPS-IIEGKSVIAKAETGSGKNIGIRDP 185
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
+ PT E
Sbjct: 186 NI---------PTRE--------------------------------------------- 191
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
LA Q+ NH+ K++ + + ++GG+S ++Q R+ LWE I ++
Sbjct: 192 -LAHQIMNHLESISKFSSIFIIAIIGGLSVQRQERL--------------LWEIINQNNY 236
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
LT L K+ +LV+DE DR+++ GHF EL+ IL N L
Sbjct: 237 FLTMLSKVRFLVLDEADRLLQEGHFKELEKIL-------------------------NFL 271
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI-KS 448
R + RQ VFSAT SL+ + + + K + + I+ LN K
Sbjct: 272 KRYKIQ-----RQVLVFSATFKKSLQKKI---ENSNFFKTNTSTEDEIELFFKKLNFGKE 323
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508
K +D + I K + E I CK +KD YLYYF+L++PGRT+
Sbjct: 324 MKFIDANPQENIPKKIKEGIIECKDTDKDLYLYYFLLKYPGRTI---------------- 367
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 568
++ ++H R + N ++
Sbjct: 368 ---------------------------VFMNSIEHVHRIVPILNELN------------- 387
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
PL LH+ + Q+QRLK +++F ++ SIL+ +D+AARG+DI I+HVIHYH+PR+ ++Y
Sbjct: 388 LKPLSLHSQLRQKQRLKVIEKFNNE-ISILITSDIAARGIDISEIDHVIHYHLPRSVDLY 446
Query: 629 IHRSGRTARANNEGLTVVL 647
IHRSGRTARA N G+ V+L
Sbjct: 447 IHRSGRTARAENSGVAVLL 465
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKK 1296
D ++HRSGRTARA N G+ ++L E + KM SLEK +D + FPID S+L +K
Sbjct: 444 DLYIHRSGRTARAENSGVAVLLCTPTETIKFRKMLFSLEKSIDEILFFPIDYSLLKKLKP 503
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDEN 1335
RI L K I + K + +NWL++AA+D+ I +++ N
Sbjct: 504 RIYLGKKITDAMHYLNK-QNNNWLKEAAEDLGIDLNELN 541
>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
gi|91207781|sp|Q6BQ61.2|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
Length = 477
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 176/540 (32%), Positives = 268/540 (49%), Gaps = 91/540 (16%)
Query: 716 DDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKE-LLEVDTSNNEDMFVQMAEWVKFN 774
D +NK + S + ++ L +K KK A +E E + + N D V +KF
Sbjct: 6 DGMINKKSKTHSKKLDARALAEKIKKNALKQQAQEEPAKEENVAENFDTVVDPTAELKFK 65
Query: 775 -------IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
IPE ++ A+ Q F PT IQS +P AL KDI+G A+TGSGKT AF IPI
Sbjct: 66 SFNELKLIPE-LLEAIQQMKFTKPTPIQSEAIPHALEG-KDIIGLAQTGSGKTAAFAIPI 123
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L + E ++A Y L+LAPTRE
Sbjct: 124 LQAL---------------------------WEAQAA------------YYGLVLAPTRE 144
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA Q++ G ++ C+VGGM Q R L + PHILVATPGR+ + ++ H
Sbjct: 145 LAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLE--HTK 202
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + YLV+DE DR+++ P L IL ++ T+ R T++FSAT+T+
Sbjct: 203 GFSLKNLKYLVMDEADRLLDMDFGPALDKIL-KIIPTQ----RTTYLFSATMTNK----- 252
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
I +LQ ++ +P V ++ K L +S +L K++
Sbjct: 253 ------------------IAKLQRA-SLHNPVRVAVSNKYQTADNLVQSMMLVSDGYKNT 293
Query: 1068 YLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
YL + + + G++++ F + + +R L +L S +PLH + Q QRL +L++F+
Sbjct: 294 YLIHLLNEFLGKSIIIFTRTCAHSQRTALLARILGFSAVPLHGQLTQAQRLGSLNKFKAG 353
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ LI ++
Sbjct: 354 KANILIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDL 413
Query: 1187 PLYIKMFNSLEKKVDLPDFPI-DESVLSLIKKRIDLAKSIEYLESK-------IKKNRPD 1238
+Y+++ + L KK LP P ++VL + +D A + ++K KKNR D
Sbjct: 414 EMYLRIESVLGKK--LPKDPSPSKAVLDTLHVHVDRASAEAIRQTKDFHEKRNPKKNRDD 471
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 165/558 (29%), Positives = 240/558 (43%), Gaps = 163/558 (29%)
Query: 99 DDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKE-LLEVDTSNNEDMFVQMAEWVKFN 157
D +NK + S + ++ L +K KK A +E E + + N D V +KF
Sbjct: 6 DGMINKKSKTHSKKLDARALAEKIKKNALKQQAQEEPAKEENVAENFDTVVDPTAELKFK 65
Query: 158 -------IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
IPE ++ A+ Q F PT IQS +P AL KDI+G A+TGSGKT AF IPI
Sbjct: 66 SFNELKLIPE-LLEAIQQMKFTKPTPIQSEAIPHALEG-KDIIGLAQTGSGKTAAFAIPI 123
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L + E ++A Y L+LAPTRE
Sbjct: 124 LQAL---------------------------WEAQAA------------YYGLVLAPTRE 144
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA Q++ G ++ C+VGGM Q R L + PHILVATPGR+ + ++ H
Sbjct: 145 LAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLE--HTK 202
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + YLV+DE DR+++ P L IL + P Q
Sbjct: 203 GFSLKNLKYLVMDEADRLLDMDFGPALDKILKII-------PTQ---------------- 239
Query: 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450
R T++FSAT+T+ I +LQ ++ +P
Sbjct: 240 ----------RTTYLFSATMTN-----------------------KIAKLQR-ASLHNPV 265
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
V ++ K L +S +L K++YL + + + G+++
Sbjct: 266 RVAVSNKYQTADNLVQSMMLVSDGYKNTYLIHLLNEFLGKSI------------------ 307
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
I T+T C H ++ + L R L F S
Sbjct: 308 ---IIFTRT-------CAHSQRTALL--------ARILGF-------------------S 330
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+PLH + Q QRL +L++F+ +IL+ATDVAARGLDIP ++ VI+Y +P S+ YIH
Sbjct: 331 AVPLHGQLTQAQRLGSLNKFKAGKANILIATDVAARGLDIPSVDIVINYDIPTDSKAYIH 390
Query: 631 RSGRTARANNEGLTVVLI 648
R GRTARA G ++ LI
Sbjct: 391 RVGRTARAGKSGKSISLI 408
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ L+LAPTRELA Q++ G ++ C+VGGM Q R L + PHILVATPG
Sbjct: 133 AYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATPG 192
>gi|378727302|gb|EHY53761.1| ATP-dependent rRNA helicase RRP3 [Exophiala dermatitidis NIH/UT8656]
Length = 480
Score = 234 bits (597), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 146/465 (31%), Positives = 240/465 (51%), Gaps = 92/465 (19%)
Query: 746 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
+ ++ E++ +N+ F ++ I +++ A G+K PT IQ+ +P AL
Sbjct: 35 SDGGDDIGEIEKANSPTTFKEL------GIIDSLCEACESLGYKAPTPIQAEAIPLALQG 88
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
R D++G AETGSGKT AF +PIL +++K +
Sbjct: 89 R-DLIGLAETGSGKTAAFVLPILQALMDKPQ----------------------------- 118
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
+L++LILAPTRELA Q+ + G V+ A +VGGM Q L K
Sbjct: 119 ----------QLHSLILAPTRELAYQISEAVEALGSLIAVRCAVLVGGMDMITQAIALGK 168
Query: 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
PH++VATPGRL + ++ + L ++ YLV+DE DR+++ P ILD++
Sbjct: 169 KPHVIVATPGRLLDHLE--NTKGFSLRQLKYLVMDEADRLLDLDFGP----ILDKILKIL 222
Query: 986 TSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037
+ R+T++FSAT++ SL N L + Q K + VS
Sbjct: 223 PREGRKTYLFSATMSSKVESLQRASLSNPLRVAVSQDKYQTVS----------------- 265
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQL 1096
TL +S + H KD YL + + +H G T ++F +++ +R++ L
Sbjct: 266 --------------TLIQSYLFIPHKHKDLYLIHILNEHAGHTGIIFTRTVNEAQRVSIL 311
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L L S +P+H ++Q+ RL L++FR ++ ++L+A+DVAARGLDIP ++ VI++ +P+
Sbjct: 312 LRTLGFSAIPIHGQLSQQARLAALNKFRAKSRNLLVASDVAARGLDIPSVDLVINFDLPQ 371
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
S+ YIHR GRTARA GL + + ++ L++++ +L KK+D
Sbjct: 372 DSKTYIHRVGRTARAGKSGLAISFVTQYDVELWLRIEGALGKKLD 416
Score = 190 bits (483), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 145/535 (27%), Positives = 231/535 (43%), Gaps = 174/535 (32%)
Query: 129 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
+ ++ E++ +N+ F ++ I +++ A G+K PT IQ+ +P AL
Sbjct: 35 SDGGDDIGEIEKANSPTTFKEL------GIIDSLCEACESLGYKAPTPIQAEAIPLALQG 88
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
R D++G AETGSGKT AF +PIL +++K +
Sbjct: 89 R-DLIGLAETGSGKTAAFVLPILQALMDKPQ----------------------------- 118
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
+L++LILAPTRELA Q+ + G V+ A +VGGM Q L K
Sbjct: 119 ----------QLHSLILAPTRELAYQISEAVEALGSLIAVRCAVLVGGMDMITQAIALGK 168
Query: 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
PH++VATPGRL + ++ + L ++ YLV+DE DR+++ P
Sbjct: 169 KPHVIVATPGRLLDHLE--NTKGFSLRQLKYLVMDEADRLLDLDFGP------------- 213
Query: 369 TSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLKNSLNL 420
ILD++ + R+T++FSAT++ SL N L +
Sbjct: 214 -------------------ILDKILKILPREGRKTYLFSATMSSKVESLQRASLSNPLRV 254
Query: 421 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480
Q K + VS TL +S + H KD YL
Sbjct: 255 AVSQDKYQTVS-------------------------------TLIQSYLFIPHKHKDLYL 283
Query: 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540
+ + +H G T I T+T+ E+
Sbjct: 284 IHILNEHAGHT---------------------GIIFTRTVNEA----------------- 305
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+R++ LL L S +P+H ++Q+ RL L++FR ++ ++L+A
Sbjct: 306 -----------------QRVSILLRTLGFSAIPIHGQLSQQARLAALNKFRAKSRNLLVA 348
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+DVAARGLDIP ++ VI++ +P+ S+ YIHR GRTARA GL + + ++ L
Sbjct: 349 SDVAARGLDIPSVDLVINFDLPQDSKTYIHRVGRTARAGKSGLAISFVTQYDVEL 403
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+LILAPTRELA Q+ + G V+ A +VGGM Q L K PH++VATPG L
Sbjct: 122 SLILAPTRELAYQISEAVEALGSLIAVRCAVLVGGMDMITQAIALGKKPHVIVATPGRL- 180
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKAL 1474
L ++ K + K + + D L+ D I+D I P+ R+ L S +
Sbjct: 181 LDHLENTKGFSLRQLKYLVMDEADRLLD---LDFGPILDKILKILPR-EGRKTYLFSATM 236
Query: 1475 VSKRKELQ 1482
SK + LQ
Sbjct: 237 SSKVESLQ 244
>gi|50543676|ref|XP_500004.1| YALI0A12133p [Yarrowia lipolytica]
gi|74660195|sp|Q6CH58.1|RRP3_YARLI RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49645869|emb|CAG83933.1| YALI0A12133p [Yarrowia lipolytica CLIB122]
Length = 480
Score = 234 bits (597), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 154/484 (31%), Positives = 242/484 (50%), Gaps = 88/484 (18%)
Query: 739 KKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMV 798
KK + YTS +EVD S Q + + ++I + F PT IQ+
Sbjct: 45 KKSSKNYTS-----VEVDESEE-----QTKTFKDLGVIDSICETCEELKFTKPTPIQAQS 94
Query: 799 MPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 858
+P AL R DI+G A+TGSGKT AF IP+L + ENP
Sbjct: 95 IPYALEGR-DIIGLAQTGSGKTAAFAIPVLQSL---YENP-------------------- 130
Query: 859 LEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK 918
LY ++LAPTRELA Q+ G ++ A VVGGM+
Sbjct: 131 ----------------QPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMT 174
Query: 919 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 978
Q L+K PH++VATPGRL + ++ + L + +LV+DE DR+++ P L IL
Sbjct: 175 QAVALSKKPHVIVATPGRLVDHLE--NTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKIL 232
Query: 979 DRVTMTETSQPRQ--TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 1036
+ PRQ T++FSAT+T SK +K+ + ++
Sbjct: 233 KVI-------PRQRNTYLFSATMT-------------SKVEKLQRA-----------SLV 261
Query: 1037 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQ 1095
P V ++ K L + + C KD++L Y + ++ G +++ F + S +R++
Sbjct: 262 DPVRVAVSTKYQTADNLLQYMVFCPFKHKDTHLVYLVSENAGNSMIIFARTKSDTQRISL 321
Query: 1096 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 1155
LL L +PLH ++Q RL L++F+ + +IL+ATDVA+RGLDIP ++ VI+Y +P
Sbjct: 322 LLRNLGYGAIPLHGDLSQTARLGALNKFKSGSRNILIATDVASRGLDIPAVDLVINYDIP 381
Query: 1156 RTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1215
S+ YIHR GRTARA G ++ L+ ++ LY+++ +L KK+D +P++ + L
Sbjct: 382 SDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLRIEGALGKKLD--SYPLESEAVMLF 439
Query: 1216 KKRI 1219
+R+
Sbjct: 440 SERV 443
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 165/635 (25%), Positives = 262/635 (41%), Gaps = 187/635 (29%)
Query: 90 ELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQ 149
E S + ++ +D + +EI S + ++ KK + YTS +EVD S Q
Sbjct: 15 EESGSESEDNDAI--AQEILDTTKSDNEEEEPKKSSKNYTS-----VEVDESEE-----Q 62
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ + ++I + F PT IQ+ +P AL R DI+G A+TGSGKT AF IP
Sbjct: 63 TKTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGR-DIIGLAQTGSGKTAAFAIP 121
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
+L + ENP LY ++LAPTR
Sbjct: 122 VLQSL---YENP------------------------------------QPLYCVVLAPTR 142
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA Q+ G ++ A VVGGM+ Q L+K PH++VATPGRL + ++ +
Sbjct: 143 ELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRLVDHLE--NT 200
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
L + +LV+DE DR+++ P L IL + PRQ
Sbjct: 201 KGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVI-------PRQ--------------- 238
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
R T++FSAT+T SK +K+ + ++ P
Sbjct: 239 -----------RNTYLFSATMT-------------SKVEKLQRA-----------SLVDP 263
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
V ++ K L + + C KD++L Y + ++ G ++
Sbjct: 264 VRVAVSTKYQTADNLLQYMVFCPFKHKDTHLVYLVSENAGNSM----------------- 306
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
I+ + D+ +L++ G
Sbjct: 307 ---------------IIFARTKSDTQRISLLLRNLG-----------------------Y 328
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+PLH ++Q RL L++F+ + +IL+ATDVA+RGLDIP ++ VI+Y +P S+ YI
Sbjct: 329 GAIPLHGDLSQTARLGALNKFKSGSRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYI 388
Query: 630 HRSGRTARANNEGLTVVLIES-----------------DEIPLKTKFNLQEEENNEEEER 672
HR GRTARA G +V L+ D PL+++ + E E R
Sbjct: 389 HRVGRTARAGRAGKSVALVSQYDLELYLRIEGALGKKLDSYPLESEAVMLFSERVAEASR 448
Query: 673 AEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSE 707
A + K ED + K+ K +K+ ++++ E
Sbjct: 449 AAIQEMKGED----GTKKRSKFDKKRRRDEMDIGE 479
Score = 57.0 bits (136), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
++LAPTRELA Q+ G ++ A VVGGM+ Q L+K PH++VATPG L
Sbjct: 135 CVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRL 193
Score = 46.2 bits (108), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ ++ LY+++ +L KK+D +P++ + L +R+
Sbjct: 386 SYIHRVGRTARAGRAGKSVALVSQYDLELYLRIEGALGKKLD--SYPLESEAVMLFSERV 443
>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 479
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 158/500 (31%), Positives = 252/500 (50%), Gaps = 78/500 (15%)
Query: 758 SNNE--DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
+NNE + F A + + + I A+ G+ P+KIQ +P L A KDI+G AET
Sbjct: 16 ANNETAEGFSGSASFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGL-AGKDIIGLAET 74
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF IPIL + L NP
Sbjct: 75 GSGKTGAFVIPILQSL---LHNP------------------------------------Q 95
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
+LYAL+LAPTRELA Q+ G +K ACVVGG+ +Q L + PH+++ATPG
Sbjct: 96 RLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPG 155
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RL + ++ + L + +LV+DE DRM+ E+ I+ + R T++F
Sbjct: 156 RLVDHLE--NTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAD-----RNTYLF 208
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T SK +K+ + ++K P V++T K +TL +
Sbjct: 209 SATMT-------------SKVRKLQRA-----------SLKDPVKVEITHKFATPETLKQ 244
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ KD YL Y + + G++ L+F ++ + +++T +L L + LH M Q
Sbjct: 245 HYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQP 304
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
RL L++F+ + ++L+ TDVA+RGLDIP ++ VI+Y +P + YIHR GRTARA
Sbjct: 305 SRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRA 364
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK 1234
G+ + + ++ LY ++ + L K+D + +E + +I +R++ A+ I +E +K+
Sbjct: 365 GVAISFVTQYDVELYQRIEHLLGTKLDA--YSCEEETVLVITERVNEAQRIATIE--MKE 420
Query: 1235 NRPDNWLHRSGRTARANNEG 1254
+ + GR AR +NEG
Sbjct: 421 AAANGTGIKRGRYARDDNEG 440
Score = 172 bits (436), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 155/573 (27%), Positives = 240/573 (41%), Gaps = 166/573 (28%)
Query: 141 SNNE--DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
+NNE + F A + + + I A+ G+ P+KIQ +P L A KDI+G AET
Sbjct: 16 ANNETAEGFSGSASFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGL-AGKDIIGLAET 74
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF IPIL + L NP
Sbjct: 75 GSGKTGAFVIPILQSL---LHNP------------------------------------Q 95
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
+LYAL+LAPTRELA Q+ G +K ACVVGG+ +Q L + PH+++ATPG
Sbjct: 96 RLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPG 155
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RL + ++ + L + +LV+DE DRM+ S F E E +Q Q M
Sbjct: 156 RLVDHLE--NTKGFSLRTMKFLVLDEADRML-SMDFEE-----------EINQIVQLM-- 199
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
R T++FSAT+T SK +K+ +
Sbjct: 200 -------------------PADRNTYLFSATMT-------------SKVRKLQRA----- 222
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
++K P V++T K +TL + + KD YL Y + + G Q
Sbjct: 223 ------SLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAG-------QS 269
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
+L S + T+K+ + + +C H +
Sbjct: 270 VLIFAS--TCNGTQKVTLMLRNLGFQAICLHGQ--------------------------- 300
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
M Q RL L++F+ + ++L+ TDVA+RGLDIP ++ VI+
Sbjct: 301 -------------------MPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVIN 341
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKE 678
Y +P + YIHR GRTARA G+ + + T+++++ + E + D
Sbjct: 342 YDIPTHGKDYIHRVGRTARAGRAGVAISFV--------TQYDVELYQRIEHLLGTKLDAY 393
Query: 679 KTEDINVTVSSKKKKLKRKQNPSQVEVSELSAN 711
E+ V V + +++ Q + +E+ E +AN
Sbjct: 394 SCEEETVLVIT--ERVNEAQRIATIEMKEAAAN 424
Score = 60.1 bits (144), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+LAPTRELA Q+ G +K ACVVGG+ +Q L + PH+++ATPG L
Sbjct: 99 ALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRL- 157
Query: 1416 LKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDE----NLIQPKANSRENALM 1470
+++LE +K R +L D + +D E ++Q R L
Sbjct: 158 ---------VDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPADRNTYLF 208
Query: 1471 SKALVSKRKELQ 1482
S + SK ++LQ
Sbjct: 209 SATMTSKVRKLQ 220
Score = 42.4 bits (98), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G+ + + ++ LY ++ + L K+D + +E + +I +R+
Sbjct: 350 DYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDA--YSCEEETVLVITERV 407
Query: 1299 DLAKSIEYLESK 1310
+ A+ I +E K
Sbjct: 408 NEAQRIATIEMK 419
>gi|395538707|ref|XP_003771316.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Sarcophilus harrisii]
Length = 460
Score = 233 bits (595), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 160/470 (34%), Positives = 242/470 (51%), Gaps = 79/470 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E + A Q G+KTPTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 30 LGVTEVLCDACDQLGWKTPTKIQIEAIPMALEGR-DIIGLAETGSGKTGAFALPILNAL- 87
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P + +AL+L PTRELA Q+
Sbjct: 88 --LETP------------------------------------QRFFALVLTPTRELAFQI 109
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 110 SEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNLRAL 169
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 170 ---KYLVMDEADRILNMDFETEVDKILKLI-----PRDRKTFLFSATMT----------- 210
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KDSYL Y
Sbjct: 211 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDSYLVY 257
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + +VFC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 258 ILNELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSI 317
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G ++ + ++ LY
Sbjct: 318 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQ 377
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK---SIEYLESKIKKNRP 1237
++ + + KK LP FP E + L+ +R+ A+ +E E K+ RP
Sbjct: 378 RIEHLIGKK--LPAFPTQEEEVMLLTERVAEAQRFARMEMREQGEKRKRP 425
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 155/535 (28%), Positives = 229/535 (42%), Gaps = 168/535 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E + A Q G+KTPTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 30 LGVTEVLCDACDQLGWKTPTKIQIEAIPMALEGR-DIIGLAETGSGKTGAFALPILNAL- 87
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P + +AL+L PTRELA Q+
Sbjct: 88 --LETP------------------------------------QRFFALVLTPTRELAFQI 109
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 110 SEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNLRAL 169
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 170 ---KYLVMDEADRILNMDFETEVDKILKLI-------PRD-------------------- 199
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 200 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 229
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KDSYL Y + + G
Sbjct: 230 SSKYQTVEKLQQYYLFIPSKFKDSYLVYILNELAG------------------------- 264
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 265 ------------------NSFMVF------------CSTCNNTQRTALLLRNLGFTAIPL 294
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 295 HGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 354
Query: 635 TARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEADK 677
TARA G ++ + ++ L + F QEEE ER AEA +
Sbjct: 355 TARAGRSGKSITFVTQYDVELYQRIEHLIGKKLPAFPTQEEEVMLLTERVAEAQR 409
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PH+++ATPG
Sbjct: 94 FFALVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKPHVIIATPGR 153
Query: 1414 LSLKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENA 1468
L I++LE+ N R +L D MD + + +++ R+
Sbjct: 154 L----------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRKTF 203
Query: 1469 LMSKALVSKRKELQ 1482
L S + K ++LQ
Sbjct: 204 LFSATMTKKVQKLQ 217
Score = 45.4 bits (106), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ LY ++ + + KK LP FP E + L+ +R+
Sbjct: 347 DYIHRVGRTARAGRSGKSITFVTQYDVELYQRIEHLIGKK--LPAFPTQEEEVMLLTERV 404
Query: 1299 DLAK---SIEYLESKIKKNRP 1316
A+ +E E K+ RP
Sbjct: 405 AEAQRFARMEMREQGEKRKRP 425
>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Anolis carolinensis]
Length = 445
Score = 233 bits (594), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 158/478 (33%), Positives = 242/478 (50%), Gaps = 85/478 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E + A Q G+KTPTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 21 LGVTEVLCEACDQLGWKTPTKIQVESIPLALQGR-DIIGLAETGSGKTGAFALPILQAL- 78
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P + +AL+L PTRELA Q+
Sbjct: 79 --LETP------------------------------------QRFFALVLTPTRELAFQI 100
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 101 SEQFEALGSSIGVQTAVIVGGIDMMAQSLALAKKPHVIIATPGRLIDHLENTKGFNLRAL 160
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 161 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 201
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K P ++ K + L + + KDSYL Y
Sbjct: 202 -----KKVQK----LQRAA----LKDPVKCAVSSKYQTVEKLQQYYVFIPSKFKDSYLVY 248
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH MNQ +RL +L++F+ + S+
Sbjct: 249 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKRLGSLNKFKAKARSV 308
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++ L+
Sbjct: 309 LLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQ 368
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE---------SKIKKNRPDN 1239
++ + + KK LP FP E + ++ +R+ A+ +E S+ + N PD+
Sbjct: 369 RIEHLIGKK--LPAFPTQEDEVMMLTERVAEAQRFARMELQQKGDKKRSREEANEPDD 424
Score = 187 bits (474), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 146/501 (29%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E + A Q G+KTPTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 21 LGVTEVLCEACDQLGWKTPTKIQVESIPLALQGR-DIIGLAETGSGKTGAFALPILQAL- 78
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P + +AL+L PTRELA Q+
Sbjct: 79 --LETP------------------------------------QRFFALVLTPTRELAFQI 100
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 101 SEQFEALGSSIGVQTAVIVGGIDMMAQSLALAKKPHVIIATPGRLIDHLENTKGFNLRAL 160
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 161 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 190
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K P +
Sbjct: 191 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKDPVKCAV 220
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KDSYL Y + + G
Sbjct: 221 SSKYQTVEKLQQYYVFIPSKFKDSYLVYILNELAG------------------------- 255
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 256 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 285
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H MNQ +RL +L++F+ + S+LLATDVA+RGLDIP ++ VI++ +P S+ YIHR GR
Sbjct: 286 HGQMNQNKRLGSLNKFKAKARSVLLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGR 345
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G ++ + ++ L
Sbjct: 346 TARAGRSGKSITFVTQYDVEL 366
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+L PTRELA Q+ G V+ A +VGG+ Q L K PH+++ATPG
Sbjct: 85 FFALVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLALAKKPHVIIATPGR 144
Query: 1414 LSLKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENA 1468
L I++LE+ N R +L D MD + + +++ R+
Sbjct: 145 L----------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 194
Query: 1469 LMSKALVSKRKELQ 1482
L S + K ++LQ
Sbjct: 195 LFSATMTKKVQKLQ 208
Score = 43.5 bits (101), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L+ ++ + + KK LP FP E + ++ +R+
Sbjct: 338 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKK--LPAFPTQEDEVMMLTERV 395
Query: 1299 DLAKSIEYLE---------SKIKKNRPDN 1318
A+ +E S+ + N PD+
Sbjct: 396 AEAQRFARMELQQKGDKKRSREEANEPDD 424
>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|391863856|gb|EIT73155.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 472
Score = 233 bits (593), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 171/554 (30%), Positives = 265/554 (47%), Gaps = 126/554 (22%)
Query: 690 KKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSAN 749
KK+K+ R + P Q ++S+ A+++ +D T E Q EP S+ KQ K +
Sbjct: 5 KKRKIAR-EAPQQEDLSDSEAHSSASEDAAPNTTE-QEQEP-SEAPKQAPK-------SF 54
Query: 750 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
KEL + E + A G+K PT IQ+ +P AL R D+
Sbjct: 55 KEL---------------------GLIEQLCEACDSMGYKAPTAIQAEAIPLALQGR-DL 92
Query: 810 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869
+G AETGSGKT AF +PIL +++K
Sbjct: 93 IGLAETGSGKTAAFALPILQALMDK----------------------------------- 117
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
+ + L+LAPTRELA Q+ G V+ +VGGM Q L K PHI
Sbjct: 118 ----PSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHI 173
Query: 930 LVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 986
+VATPGRL L H T+ L + YLV+DE DR+++ P ILD++ +
Sbjct: 174 IVATPGRL-----LDHLENTKGFSLRNLKYLVMDEADRLLDMDFGP----ILDKI-LKVL 223
Query: 987 SQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 1038
+ R+T++FSAT++ SL+N L + SK + VS
Sbjct: 224 PRERRTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVS------------------ 265
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLL 1097
TL +S I H KD YL Y + + G++ ++FC ++ +RL+ L
Sbjct: 266 -------------TLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFFL 312
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
+L +PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P
Sbjct: 313 RLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPGD 372
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217
S+ +IHR GRTARA G+ + ++ ++++ +L KK LP++P ++ + ++ +
Sbjct: 373 SKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRIEGALGKK--LPEYPAEKDEVMVLAE 430
Query: 1218 RIDLAKSIEYLESK 1231
R+ A+ LE K
Sbjct: 431 RVSEAQRSAILEMK 444
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 158/584 (27%), Positives = 232/584 (39%), Gaps = 206/584 (35%)
Query: 73 KKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSAN 132
KK+K+ R + P Q ++S+ A+++ +D T E Q EPS + K K+
Sbjct: 5 KKRKIAR-EAPQQEDLSDSEAHSSASEDAAPNTTE-QEQEPSEAPKQAPKSFKE------ 56
Query: 133 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
+ E + A G+K PT IQ+ +P AL R D+
Sbjct: 57 -----------------------LGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGR-DL 92
Query: 193 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252
+G AETGSGKT AF +PIL +++K
Sbjct: 93 IGLAETGSGKTAAFALPILQALMDK----------------------------------- 117
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
+ + L+LAPTRELA Q+ G V+ +VGGM Q L K PHI
Sbjct: 118 ----PSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHI 173
Query: 313 LVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
+VATPGRL L H T+ L + YLV+DE DR+++ P L IL +
Sbjct: 174 IVATPGRL-----LDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVL----- 223
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLKNSLNLK 421
PR+ R+T++FSAT++ SL+N L +
Sbjct: 224 --PRE--------------------------RRTYLFSATMSSKVESLQRASLQNPLRVA 255
Query: 422 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 481
SK + VS TL +S I H KD YL
Sbjct: 256 VSSSKFQTVS-------------------------------TLQQSYIFIPHKHKDLYLV 284
Query: 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 541
Y + + G++ I C+
Sbjct: 285 YLLNEFVGQSCI-------------------------------IFCR------------- 300
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
++ +RL+ L +L +PLH ++Q RL L +FR ++ IL+AT
Sbjct: 301 -----------TVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVAT 349
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
DVAARGLDIP ++ V+++ +P S+ +IHR GRTARA G+ +
Sbjct: 350 DVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAI 393
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 35/62 (56%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S+ L+LAPTRELA Q+ G V+ +VGGM Q L K PHI+VATPG
Sbjct: 120 SFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPG 179
Query: 1413 AL 1414
L
Sbjct: 180 RL 181
Score = 40.8 bits (94), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
++HR GRTARA G+ + ++ ++++ +L KK LP++P ++ + ++ +R+
Sbjct: 375 TFIHRIGRTARAGKSGVAISFATQYDVEAWLRIEGALGKK--LPEYPAEKDEVMVLAERV 432
Query: 1299 DLAKSIEYLESKIKKNRPDNWLEKAAK------DMD 1328
A+ LE K + + +K AK DMD
Sbjct: 433 SEAQRSAILEMKNYDEKKGSRGKKFAKGKRSREDMD 468
>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
Length = 486
Score = 233 bits (593), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 154/485 (31%), Positives = 246/485 (50%), Gaps = 80/485 (16%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
+N +D V + + E+++ A G+K PT IQ +P AL R D++G AETG
Sbjct: 50 AANQDDAPVAKKSFADLGVVESLVEATEALGYKHPTPIQEKSIPLALAGR-DVIGLAETG 108
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
SGKT AF +P+L + LE P+
Sbjct: 109 SGKTAAFALPVLQAL---LEKPS------------------------------------G 129
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L+A+++APTRELA Q+ G ++ A +VGG+ +Q L K PH++VATPGR
Sbjct: 130 LFAVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKPHVVVATPGR 189
Query: 937 LWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
L L H T+ L + YLV+DE DR+++ P + IL + + R T+
Sbjct: 190 L-----LDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFI-----PRERHTY 239
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 1053
+FSAT++ +++ ++ S DP+ +Q + + TL
Sbjct: 240 LFSATMSSKVES----------LQRASLKDPARVSVQ-------------SNGYQVVSTL 276
Query: 1054 TESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
++ + H KD Y + I G+ T+VF ++ +RL LL L S LPLH ++
Sbjct: 277 LQNFLFIPHALKDVYCVHLINSFIGQTTIVFLRTVHDTQRLAILLRTLGFSALPLHGQLS 336
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q RL L++FR + IL+ATDVAARGLDIP ++ VI+Y +P+ S+ YIHR GRTARA
Sbjct: 337 QSARLGALNKFRAGSRDILVATDVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAG 396
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK- 1231
G L L+ ++ +++++ S+ KK+D +FP ++ + + + R++ A+ +E K
Sbjct: 397 KSGRALSLVTQYDLEIWLRIEASMGKKLD--EFPTEKEEVMVFQARVEEAQRHARIEMKH 454
Query: 1232 IKKNR 1236
+ +NR
Sbjct: 455 LMENR 459
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 156/575 (27%), Positives = 242/575 (42%), Gaps = 169/575 (29%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
+N +D V + + E+++ A G+K PT IQ +P AL R D++G AETG
Sbjct: 50 AANQDDAPVAKKSFADLGVVESLVEATEALGYKHPTPIQEKSIPLALAGR-DVIGLAETG 108
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKT AF +P+L + LE P+
Sbjct: 109 SGKTAAFALPVLQAL---LEKPS------------------------------------G 129
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L+A+++APTRELA Q+ G ++ A +VGG+ +Q L K PH++VATPGR
Sbjct: 130 LFAVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKPHVVVATPGR 189
Query: 320 LWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
L L H T+ L + YLV+DE DR+++ P + IL + PR+
Sbjct: 190 L-----LDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFI-------PRE-- 235
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
R T++FSAT++ +++ ++ S DP+
Sbjct: 236 ------------------------RHTYLFSATMSSKVES----------LQRASLKDPA 261
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
+Q + + TL ++ + H KD Y + I G+T
Sbjct: 262 RVSVQ-------------SNGYQVVSTLLQNFLFIPHALKDVYCVHLINSFIGQT----- 303
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556
I + V T+++ I RTL F
Sbjct: 304 ----TIVFLRTVHDTQRLAILL---------------------------RTLGF------ 326
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616
S LPLH ++Q RL L++FR + IL+ATDVAARGLDIP ++ V
Sbjct: 327 -------------SALPLHGQLSQSARLGALNKFRAGSRDILVATDVAARGLDIPNVDVV 373
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEAD 676
I+Y +P+ S+ YIHR GRTARA G + L+ T+++L+ E + D
Sbjct: 374 INYDLPQDSKTYIHRVGRTARAGKSGRALSLV--------TQYDLEIWLRIEASMGKKLD 425
Query: 677 KEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSAN 711
+ TE V V + +++ Q +++E+ L N
Sbjct: 426 EFPTEKEEVMVF--QARVEEAQRHARIEMKHLMEN 458
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
A+++APTRELA Q+ G ++ A +VGG+ +Q L K PH++VATPG L
Sbjct: 132 AVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKPHVVVATPGRLL 191
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
K L +S++YL + D L DMD + +++ R L
Sbjct: 192 DHLEKTKGFSL-RSLKYL----VLDEADRLL-----DMDFGPSIDKILKFIPRERHTYLF 241
Query: 1471 SKALVSKRKELQ 1482
S + SK + LQ
Sbjct: 242 SATMSSKVESLQ 253
Score = 43.1 bits (100), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
++HR GRTARA G L L+ ++ +++++ S+ KK+D +FP ++ + + + R+
Sbjct: 384 TYIHRVGRTARAGKSGRALSLVTQYDLEIWLRIEASMGKKLD--EFPTEKEEVMVFQARV 441
Query: 1299 DLAKSIEYLESK-IKKNR 1315
+ A+ +E K + +NR
Sbjct: 442 EEAQRHARIEMKHLMENR 459
>gi|340960548|gb|EGS21729.1| ATP-dependent rRNA helicase rrp3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 492
Score = 233 bits (593), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 164/536 (30%), Positives = 267/536 (49%), Gaps = 89/536 (16%)
Query: 695 KRKQNPSQVEVSELSANTNDPDDQVNKTEEIQ-SDEPHSKKLKQKKKKKQTYTSANKELL 753
+RK + S+ + + SA T D + KTEE Q S +P + +T + +K+
Sbjct: 5 RRKTSHSEGGLKDASAPTLKNDVKSKKTEEKQLSSQPKQPPAPSSEADSETIDNGSKQ-- 62
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
NN+ A+ I E++ A + G+K PT IQ +P AL R D++G A
Sbjct: 63 ----GNNDAAPKTFAD---LGIVESLCEACERLGYKRPTPIQEQAIPLALQNR-DLIGIA 114
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
ETGSGKT AF +PIL +++K +
Sbjct: 115 ETGSGKTAAFALPILQALLDKPQ------------------------------------- 137
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
L+AL+LAPTRELA Q+ G ++ A ++GG+ +Q L K PH++VAT
Sbjct: 138 --PLFALVLAPTRELAAQIAQAFEALGSMISLRCALILGGLDMVQQAIALGKKPHVIVAT 195
Query: 934 PGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
PGRL L H T+ L + YLV+DE DR+++ P L+ IL + + R
Sbjct: 196 PGRL-----LDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGPILEKILKFL-----PRER 245
Query: 991 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 1050
+TF+FSAT++ +++ ++ S DP K+ T K
Sbjct: 246 RTFLFSATMSSKVESL----------QRASLRDPL-------------KVSISTSKYQTV 282
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHA 1109
TL + I H KD+YL Y + + G+T++ F ++ +R+ LL L +PLH
Sbjct: 283 STLVQHYIFIPHIHKDTYLIYLVNEFAGKTIIIFTRTVLETQRIAILLRTLGMGAIPLHG 342
Query: 1110 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 1169
++Q RL L++FR + +IL+ATDVAARGLDIP ++ V+++ +P+ S+ Y+HR GRTA
Sbjct: 343 GLSQSARLGALNKFRAGSRNILVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTA 402
Query: 1170 RANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
RA G + + ++ ++++ +L K L ++P+++ + + K R++ A+ I
Sbjct: 403 RAGKSGHAISFVTQYDLEIWLRTEAALGYK--LTEYPLEKDEVMVFKPRVEEAQRI 456
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 175/630 (27%), Positives = 274/630 (43%), Gaps = 173/630 (27%)
Query: 78 KRKQNPSQVEVSELSANTNDPDDQVNKTEEIQ-SDEPSSKKLKQKKKKKQTYTSANKELL 136
+RK + S+ + + SA T D + KTEE Q S +P + +T + +K+
Sbjct: 5 RRKTSHSEGGLKDASAPTLKNDVKSKKTEEKQLSSQPKQPPAPSSEADSETIDNGSKQ-- 62
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
NN+ A+ I E++ A + G+K PT IQ +P AL R D++G A
Sbjct: 63 ----GNNDAAPKTFAD---LGIVESLCEACERLGYKRPTPIQEQAIPLALQNR-DLIGIA 114
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
ETGSGKT AF +PIL +++K +
Sbjct: 115 ETGSGKTAAFALPILQALLDKPQ------------------------------------- 137
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
L+AL+LAPTRELA Q+ G ++ A ++GG+ +Q L K PH++VAT
Sbjct: 138 --PLFALVLAPTRELAAQIAQAFEALGSMISLRCALILGGLDMVQQAIALGKKPHVIVAT 195
Query: 317 PGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
PGRL L H T+ L + YLV+DE DR+++ P L+ IL + PR
Sbjct: 196 PGRL-----LDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGPILEKILKFL-------PR 243
Query: 374 QTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
+ R+TF+FSAT++ +++ ++ S
Sbjct: 244 E--------------------------RRTFLFSATMSSKVES----------LQRASLR 267
Query: 434 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
DP K+ T K TL + I H KD+YL Y + + G+T+
Sbjct: 268 DPL-------------KVSISTSKYQTVSTLVQHYIFIPHIHKDTYLIYLVNEFAGKTI- 313
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 553
I T+T+ E+
Sbjct: 314 --------------------IIFTRTVLET------------------------------ 323
Query: 554 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613
+R+ LL L +PLH ++Q RL L++FR + +IL+ATDVAARGLDIP +
Sbjct: 324 ----QRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRNILVATDVAARGLDIPNV 379
Query: 614 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI-ESD-EIPLKTKFNLQEE--ENNEE 669
+ V+++ +P+ S+ Y+HR GRTARA G + + + D EI L+T+ L + E E
Sbjct: 380 DCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISFVTQYDLEIWLRTEAALGYKLTEYPLE 439
Query: 670 EERAEADKEKTEDINVTVSSKKKKLKRKQN 699
++ K + E+ ++ KKL+ +Q+
Sbjct: 440 KDEVMVFKPRVEEAQRIAKNEMKKLQEEQD 469
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+LAPTRELA Q+ G ++ A ++GG+ +Q L K PH++VATPG L
Sbjct: 141 ALVLAPTRELAAQIAQAFEALGSMISLRCALILGGLDMVQQAIALGKKPHVIVATPGRL- 199
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKAL 1474
L ++ K K + + D L DMD E +++ R L S +
Sbjct: 200 LDHLEKTKGFSLRNLKYLVMDEADRLL-----DMDFGPILEKILKFLPRERRTFLFSATM 254
Query: 1475 VSKRKELQ 1482
SK + LQ
Sbjct: 255 SSKVESLQ 262
>gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR]
Length = 485
Score = 232 bits (591), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 151/460 (32%), Positives = 239/460 (51%), Gaps = 78/460 (16%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWVK-----FNIPETIIRALYQKGFKTPTKIQSMVMPSAL 803
+++L V+ ++E VQ E V I +++ A G+K+PT IQ+ +P AL
Sbjct: 35 DEQLTAVNEQDDESPQVQREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLAL 94
Query: 804 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863
R D++G AETGSGKT AF +PIL ++NK ++
Sbjct: 95 QGR-DLIGLAETGSGKTAAFALPILQALMNKPQS-------------------------- 127
Query: 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923
L+ LILAPTRELA Q+ G V+ A +VGGM Q L
Sbjct: 128 -------------LFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISL 174
Query: 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
K PHI+VATPGRL + ++ + L + YLV+DE DR+++ P ILD++ +
Sbjct: 175 GKKPHIIVATPGRLLDHLE--NTKGFSLRNLKYLVMDEADRLLDLDFGP----ILDKI-L 227
Query: 984 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 1043
+ R+T++FSAT++ ++ S++R ++ +P V +
Sbjct: 228 KVLPRERRTYLFSATMSSKVE--------------------SLQRA----SLSNPLRVSI 263
Query: 1044 TE-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLK 1101
+ K TL +S + H KD YL Y + ++ G++ +VF +++ +RL LL L
Sbjct: 264 SSNKYQTVATLLQSYLFIPHKYKDVYLVYLLNEYAGQSAIVFTRTVNETQRLAILLRALG 323
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
+PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P S+ Y
Sbjct: 324 FGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTY 383
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
IHR GRTARA G ++ +I +++++ N+L KK+D
Sbjct: 384 IHRVGRTARAGKSGHAFSIVTQYDIEVWLRIENALGKKLD 423
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 150/528 (28%), Positives = 228/528 (43%), Gaps = 160/528 (30%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWVK-----FNIPETIIRALYQKGFKTPTKIQSMVMPSAL 186
+++L V+ ++E VQ E V I +++ A G+K+PT IQ+ +P AL
Sbjct: 35 DEQLTAVNEQDDESPQVQREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLAL 94
Query: 187 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246
R D++G AETGSGKT AF +PIL ++NK ++
Sbjct: 95 QGR-DLIGLAETGSGKTAAFALPILQALMNKPQS-------------------------- 127
Query: 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306
L+ LILAPTRELA Q+ G V+ A +VGGM Q L
Sbjct: 128 -------------LFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISL 174
Query: 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 366
K PHI+VATPGRL + ++ + L + YLV+DE DR+++ P L IL +
Sbjct: 175 GKKPHIIVATPGRLLDHLE--NTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVL-- 230
Query: 367 TETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 426
PR+ R+T++FSAT++ ++
Sbjct: 231 -----PRE--------------------------RRTYLFSATMSSKVE----------- 248
Query: 427 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYYFIL 485
S++R ++ +P V ++ K TL +S + H KD YL Y +
Sbjct: 249 ---------SLQR----ASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDVYLVYLLN 295
Query: 486 QHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 545
++ G++ I T+T+ E+
Sbjct: 296 EYAGQS---------------------AIVFTRTVNET---------------------- 312
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+RL LL L +PLH ++Q RL L +FR ++ IL+ATDVAA
Sbjct: 313 ------------QRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAA 360
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
RGLDIP ++ V+++ +P S+ YIHR GRTARA G ++ +I
Sbjct: 361 RGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDI 408
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 35/62 (56%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S LILAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 127 SLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATPG 186
Query: 1413 AL 1414
L
Sbjct: 187 RL 188
>gi|334348319|ref|XP_001371236.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Monodelphis domestica]
Length = 459
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 153/461 (33%), Positives = 238/461 (51%), Gaps = 76/461 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+KTPTKIQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 30 LGVTDVLCDACDQLGWKTPTKIQIEAIPMALDGR-DIIGLAETGSGKTGAFALPILNALL 88
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ T + +AL+L PTRELA Q+
Sbjct: 89 D---------------------------------------TPQRFFALVLTPTRELAFQI 109
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 110 SEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNLRAL 169
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 170 ---KYLVMDEADRILNMDFETEVDKILKLI-----PRDRKTFLFSATMT----------- 210
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KDSYL Y
Sbjct: 211 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDSYLVY 257
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + +VFC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 258 ILNELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSI 317
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G ++ + ++ LY
Sbjct: 318 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQ 377
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ + + KK LP FP E + L+ +R+ A+ +E +
Sbjct: 378 RIEHLIGKK--LPAFPTQEEEVMLLTERVAEAQRFARMEMR 416
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 152/535 (28%), Positives = 229/535 (42%), Gaps = 168/535 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+KTPTKIQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 30 LGVTDVLCDACDQLGWKTPTKIQIEAIPMALDGR-DIIGLAETGSGKTGAFALPILNALL 88
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ T + +AL+L PTRELA Q+
Sbjct: 89 D---------------------------------------TPQRFFALVLTPTRELAFQI 109
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 110 SEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNLRAL 169
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 170 ---KYLVMDEADRILNMDFETEVDKILKLI-------PRD-------------------- 199
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 200 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 229
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KDSYL Y + + G
Sbjct: 230 SSKYQTVEKLQQYYLFIPSKFKDSYLVYILNELAG------------------------- 264
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 265 ------------------NSFMVF------------CSTCNNTQRTALLLRNLGFTAIPL 294
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 295 HGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 354
Query: 635 TARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEADK 677
TARA G ++ + ++ L + F QEEE ER AEA +
Sbjct: 355 TARAGRSGKSITFVTQYDVELYQRIEHLIGKKLPAFPTQEEEVMLLTERVAEAQR 409
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PH+++ATPG
Sbjct: 94 FFALVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKPHVIIATPGR 153
Query: 1414 L 1414
L
Sbjct: 154 L 154
Score = 44.7 bits (104), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ LY ++ + + KK LP FP E + L+ +R+
Sbjct: 347 DYIHRVGRTARAGRSGKSITFVTQYDVELYQRIEHLIGKK--LPAFPTQEEEVMLLTERV 404
Query: 1299 DLAKSIEYLESK 1310
A+ +E +
Sbjct: 405 AEAQRFARMEMR 416
>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
gi|91207780|sp|Q2UNB7.1|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 472
Score = 231 bits (588), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 171/554 (30%), Positives = 264/554 (47%), Gaps = 126/554 (22%)
Query: 690 KKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSAN 749
KK+K+ R + P Q + S+ A+++ +D T E Q EP S+ KQ K +
Sbjct: 5 KKRKIAR-EAPQQEDHSDSEAHSSASEDAAPNTTE-QEQEP-SEAPKQAPK-------SF 54
Query: 750 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
KEL + E + A G+K PT IQ+ +P AL R D+
Sbjct: 55 KEL---------------------GLIEQLCEACDSMGYKAPTAIQAEAIPLALQGR-DL 92
Query: 810 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869
+G AETGSGKT AF +PIL +++K
Sbjct: 93 IGLAETGSGKTAAFALPILQALMDK----------------------------------- 117
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
+ + L+LAPTRELA Q+ G V+ +VGGM Q L K PHI
Sbjct: 118 ----PSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHI 173
Query: 930 LVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 986
+VATPGRL L H T+ L + YLV+DE DR+++ P ILD++ +
Sbjct: 174 IVATPGRL-----LDHLENTKGFSLRNLKYLVMDEADRLLDMDFGP----ILDKI-LKVL 223
Query: 987 SQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 1038
+ R+T++FSAT++ SL+N L + SK + VS
Sbjct: 224 PRERRTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVS------------------ 265
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLL 1097
TL +S I H KD YL Y + + G++ ++FC ++ +RL+ L
Sbjct: 266 -------------TLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFFL 312
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
+L +PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P
Sbjct: 313 RLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPGD 372
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217
S+ +IHR GRTARA G+ + ++ ++++ +L KK LP++P ++ + ++ +
Sbjct: 373 SKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRIEGALGKK--LPEYPAEKDEVMVLAE 430
Query: 1218 RIDLAKSIEYLESK 1231
R+ A+ LE K
Sbjct: 431 RVSEAQRSAILEMK 444
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 158/584 (27%), Positives = 231/584 (39%), Gaps = 206/584 (35%)
Query: 73 KKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSAN 132
KK+K+ R + P Q + S+ A+++ +D T E Q EPS + K K+
Sbjct: 5 KKRKIAR-EAPQQEDHSDSEAHSSASEDAAPNTTE-QEQEPSEAPKQAPKSFKE------ 56
Query: 133 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
+ E + A G+K PT IQ+ +P AL R D+
Sbjct: 57 -----------------------LGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGR-DL 92
Query: 193 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252
+G AETGSGKT AF +PIL +++K
Sbjct: 93 IGLAETGSGKTAAFALPILQALMDK----------------------------------- 117
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
+ + L+LAPTRELA Q+ G V+ +VGGM Q L K PHI
Sbjct: 118 ----PSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHI 173
Query: 313 LVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
+VATPGRL L H T+ L + YLV+DE DR+++ P L IL +
Sbjct: 174 IVATPGRL-----LDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVL----- 223
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLKNSLNLK 421
PR+ R+T++FSAT++ SL+N L +
Sbjct: 224 --PRE--------------------------RRTYLFSATMSSKVESLQRASLQNPLRVA 255
Query: 422 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 481
SK + VS TL +S I H KD YL
Sbjct: 256 VSSSKFQTVS-------------------------------TLQQSYIFIPHKHKDLYLV 284
Query: 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 541
Y + + G++ I C+
Sbjct: 285 YLLNEFVGQSCI-------------------------------IFCR------------- 300
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
++ +RL+ L +L +PLH ++Q RL L +FR ++ IL+AT
Sbjct: 301 -----------TVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVAT 349
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
DVAARGLDIP ++ V+++ +P S+ +IHR GRTARA G+ +
Sbjct: 350 DVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAI 393
Score = 57.0 bits (136), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 35/62 (56%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S+ L+LAPTRELA Q+ G V+ +VGGM Q L K PHI+VATPG
Sbjct: 120 SFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPG 179
Query: 1413 AL 1414
L
Sbjct: 180 RL 181
Score = 40.8 bits (94), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
++HR GRTARA G+ + ++ ++++ +L KK LP++P ++ + ++ +R+
Sbjct: 375 TFIHRIGRTARAGKSGVAISFATQYDVEAWLRIEGALGKK--LPEYPAEKDEVMVLAERV 432
Query: 1299 DLAKSIEYLESKIKKNRPDNWLEKAAK------DMD 1328
A+ LE K + + +K AK DMD
Sbjct: 433 SEAQRSAILEMKNYDEKKGSRGKKFAKGKRSREDMD 468
>gi|453082962|gb|EMF11008.1| ATP-dependent rRNA helicase RRP3 [Mycosphaerella populorum SO2202]
Length = 516
Score = 231 bits (588), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 233/464 (50%), Gaps = 75/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + E + A G+KTPT IQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 90 FAELGVREELCDACISLGYKTPTAIQRESIPIALQG-KDVIGLAETGSGKTAAFALPILQ 148
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ K ++ + L+LAPTRELA
Sbjct: 149 ALLEK---------------------------------------QDHYFGLVLAPTRELA 169
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ G VK A +VGGM Q L K PHI+VATPGRL + ++ +
Sbjct: 170 YQISQQFEALGSLINVKCAVIVGGMDMTPQQIALAKKPHIIVATPGRLMDHLE--NTKGF 227
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L K+ YLV+DE DR+++ P ILD++ + + R+T +FSAT++ L N L
Sbjct: 228 SLRKLKYLVMDEADRLLDLDFGP----ILDKI-LQVLPRERRTMLFSATMSTKLDN---L 279
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK-IGITKTLTESKILCKHDEKDSY 1068
+ ++SP V ++ K L +S I H KD Y
Sbjct: 280 TRAA---------------------LQSPVRVSISSSSYQTVKNLKQSYIFIPHKFKDIY 318
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + + G+T ++F +I+ R+ LL L S +PLH +NQ RL L++FR +
Sbjct: 319 LVYLVNEFAGQTCIIFTRTINETARIAFLLRALGRSAIPLHGQLNQSARLGALNKFRGGS 378
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDIP ++ V++Y +P S+ Y+HR GRTARA G+ + ++ ++
Sbjct: 379 RDILVATDVAARGLDIPSVDLVLNYDLPPDSKTYVHRVGRTARAGKAGVAISIVTQYDVE 438
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+Y ++ +L KK L +F ++ + + +R+ A+ + E K
Sbjct: 439 VYQRIEKALGKK--LAEFGTEKDEVMVFAQRVQEAQRVAVQEMK 480
Score = 189 bits (481), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 147/497 (29%), Positives = 210/497 (42%), Gaps = 155/497 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + E + A G+KTPT IQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 90 FAELGVREELCDACISLGYKTPTAIQRESIPIALQG-KDVIGLAETGSGKTAAFALPILQ 148
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ K ++ + L+LAPTRELA
Sbjct: 149 ALLEK---------------------------------------QDHYFGLVLAPTRELA 169
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ G VK A +VGGM Q L K PHI+VATPGRL + ++ +
Sbjct: 170 YQISQQFEALGSLINVKCAVIVGGMDMTPQQIALAKKPHIIVATPGRLMDHLE--NTKGF 227
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L K+ YLV+DE DR+++ P L IL + PR+
Sbjct: 228 SLRKLKYLVMDEADRLLDLDFGPILDKILQVL-------PRE------------------ 262
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+T +FSAT++ L NL + ++SP V
Sbjct: 263 --------RRTMLFSATMSTKLD---NLTRAA---------------------LQSPVRV 290
Query: 453 DL-TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
+ + K L +S I H KD YL Y + + G+T C
Sbjct: 291 SISSSSYQTVKNLKQSYIFIPHKFKDIYLVYLVNEFAGQT-C------------------ 331
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
I T+T+ E+ R+ LL L S
Sbjct: 332 --IIFTRTINET----------------------------------ARIAFLLRALGRSA 355
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH +NQ RL L++FR + IL+ATDVAARGLDIP ++ V++Y +P S+ Y+HR
Sbjct: 356 IPLHGQLNQSARLGALNKFRGGSRDILVATDVAARGLDIPSVDLVLNYDLPPDSKTYVHR 415
Query: 632 SGRTARANNEGLTVVLI 648
GRTARA G+ + ++
Sbjct: 416 VGRTARAGKAGVAISIV 432
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 35/61 (57%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ L+LAPTRELA Q+ G VK A +VGGM Q L K PHI+VATPG
Sbjct: 157 YFGLVLAPTRELAYQISQQFEALGSLINVKCAVIVGGMDMTPQQIALAKKPHIIVATPGR 216
Query: 1414 L 1414
L
Sbjct: 217 L 217
>gi|37362659|ref|NP_011932.2| RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|81175193|sp|P38712.2|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|285809971|tpg|DAA06758.1| TPA: RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|392298867|gb|EIW09962.1| Rrp3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 501
Score = 230 bits (587), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 242/468 (51%), Gaps = 76/468 (16%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 72 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 127
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF IPIL N+L + E
Sbjct: 128 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 148
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RL + ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T++F
Sbjct: 209 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLF 262
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T SK K+ + ++ +P ++ K TL +
Sbjct: 263 SATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQ 298
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ ++ K++YL Y + + G+T++ F + ++ +RL+ L +L+ S LH +NQ
Sbjct: 299 TLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQN 358
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR+ +LD F+ SIL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA
Sbjct: 359 QRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS 418
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
G ++ L+ ++ L +++ L KK LP +D++++ ++ +D A
Sbjct: 419 GKSISLVSQYDLELILRIEEVLGKK--LPKESVDKNIILTLRDSVDKA 464
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 222/517 (42%), Gaps = 156/517 (30%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 72 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 127
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF IPIL N+L + E
Sbjct: 128 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 148
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RL + ++ + L K+ +LV+DE DR+++ P
Sbjct: 209 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----------------------- 243
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
+LDR+ +Q R T++FSAT+T SK K+ +
Sbjct: 244 ---------VLDRILKIIPTQERTTYLFSATMT-------------SKIDKLQRA----- 276
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
++ +P ++ K TL ++ ++ K++YL Y + + G+T+
Sbjct: 277 ------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTM------ 324
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
I T+T ++ L CN
Sbjct: 325 ---------------IIFTRTKANAERLSG---------------------LCN------ 342
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
+L+ S LH +NQ QR+ +LD F+ SIL+ATDVAARGLDIP ++ V++
Sbjct: 343 -------LLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVN 395
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 396 YDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 432
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 150 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGR 209
Query: 1414 L 1414
L
Sbjct: 210 L 210
>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
gi|160358658|sp|A6QRQ7.1|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
Length = 485
Score = 230 bits (587), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 150/460 (32%), Positives = 238/460 (51%), Gaps = 78/460 (16%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWVK-----FNIPETIIRALYQKGFKTPTKIQSMVMPSAL 803
+++L + ++E VQ E V I +++ A G+K+PT IQ+ +P AL
Sbjct: 35 DEQLTAANEQDDESPQVQREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLAL 94
Query: 804 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863
R D++G AETGSGKT AF +PIL ++NK ++
Sbjct: 95 QGR-DLIGLAETGSGKTAAFALPILQALMNKPQS-------------------------- 127
Query: 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923
L+ LILAPTRELA Q+ G V+ A +VGGM Q L
Sbjct: 128 -------------LFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISL 174
Query: 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
K PHI+VATPGRL + ++ + L + YLV+DE DR+++ P ILD++ +
Sbjct: 175 GKKPHIIVATPGRLLDHLE--NTKGFSLRSLKYLVMDEADRLLDLDFGP----ILDKI-L 227
Query: 984 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 1043
+ R+T++FSAT++ ++ S++R ++ +P V +
Sbjct: 228 KVLPRERRTYLFSATMSSKVE--------------------SLQRA----SLSNPLRVSI 263
Query: 1044 TE-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLK 1101
+ K TL +S + H KD YL Y + ++ G++ +VF +++ +RL LL L
Sbjct: 264 SSNKYQTVATLLQSYLFIPHKYKDIYLVYLLNEYAGQSAIVFTRTVNETQRLAILLRALG 323
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
+PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P S+ Y
Sbjct: 324 FGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTY 383
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
IHR GRTARA G ++ +I +++++ N+L KK+D
Sbjct: 384 IHRVGRTARAGKSGHAFSIVTQYDIEVWLRIENALGKKLD 423
Score = 186 bits (472), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 149/528 (28%), Positives = 227/528 (42%), Gaps = 160/528 (30%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWVK-----FNIPETIIRALYQKGFKTPTKIQSMVMPSAL 186
+++L + ++E VQ E V I +++ A G+K+PT IQ+ +P AL
Sbjct: 35 DEQLTAANEQDDESPQVQREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLAL 94
Query: 187 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246
R D++G AETGSGKT AF +PIL ++NK ++
Sbjct: 95 QGR-DLIGLAETGSGKTAAFALPILQALMNKPQS-------------------------- 127
Query: 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306
L+ LILAPTRELA Q+ G V+ A +VGGM Q L
Sbjct: 128 -------------LFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISL 174
Query: 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 366
K PHI+VATPGRL + ++ + L + YLV+DE DR+++ P L IL +
Sbjct: 175 GKKPHIIVATPGRLLDHLE--NTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVL-- 230
Query: 367 TETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 426
PR+ R+T++FSAT++ ++
Sbjct: 231 -----PRE--------------------------RRTYLFSATMSSKVE----------- 248
Query: 427 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYYFIL 485
S++R ++ +P V ++ K TL +S + H KD YL Y +
Sbjct: 249 ---------SLQR----ASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDIYLVYLLN 295
Query: 486 QHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 545
++ G++ I T+T+ E+
Sbjct: 296 EYAGQS---------------------AIVFTRTVNET---------------------- 312
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+RL LL L +PLH ++Q RL L +FR ++ IL+ATDVAA
Sbjct: 313 ------------QRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAA 360
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
RGLDIP ++ V+++ +P S+ YIHR GRTARA G ++ +I
Sbjct: 361 RGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDI 408
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 35/62 (56%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S LILAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 127 SLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATPG 186
Query: 1413 AL 1414
L
Sbjct: 187 RL 188
>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
Length = 485
Score = 230 bits (586), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 150/460 (32%), Positives = 238/460 (51%), Gaps = 78/460 (16%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWVK-----FNIPETIIRALYQKGFKTPTKIQSMVMPSAL 803
+++L + ++E VQ E V I +++ A G+K+PT IQ+ +P AL
Sbjct: 35 DEQLTAANEQDDESPQVQREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLAL 94
Query: 804 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863
R D++G AETGSGKT AF +PIL ++NK ++
Sbjct: 95 QGR-DLIGLAETGSGKTAAFALPILQALMNKPQS-------------------------- 127
Query: 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923
L+ LILAPTRELA Q+ G V+ A +VGGM Q L
Sbjct: 128 -------------LFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISL 174
Query: 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
K PHI+VATPGRL + ++ + L + YLV+DE DR+++ P ILD++ +
Sbjct: 175 GKKPHIIVATPGRLLDHLE--NTKGFSLRNLKYLVMDEADRLLDLDFGP----ILDKI-L 227
Query: 984 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 1043
+ R+T++FSAT++ ++ S++R ++ +P V +
Sbjct: 228 KVLPRERRTYLFSATMSSKVE--------------------SLQRA----SLSNPLRVSI 263
Query: 1044 TE-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLK 1101
+ K TL +S + H KD YL Y + ++ G++ +VF +++ +RL LL L
Sbjct: 264 SSNKYQTVATLLQSYLFIPHKYKDVYLVYLLNEYAGQSAIVFTRTVNETQRLAILLRTLG 323
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
+PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P S+ Y
Sbjct: 324 FGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTY 383
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
IHR GRTARA G ++ +I +++++ N+L KK+D
Sbjct: 384 IHRVGRTARAGKSGHAFSIVTQYDIEVWLRIENALGKKLD 423
Score = 186 bits (472), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 149/528 (28%), Positives = 227/528 (42%), Gaps = 160/528 (30%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWVK-----FNIPETIIRALYQKGFKTPTKIQSMVMPSAL 186
+++L + ++E VQ E V I +++ A G+K+PT IQ+ +P AL
Sbjct: 35 DEQLTAANEQDDESPQVQREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLAL 94
Query: 187 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246
R D++G AETGSGKT AF +PIL ++NK ++
Sbjct: 95 QGR-DLIGLAETGSGKTAAFALPILQALMNKPQS-------------------------- 127
Query: 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306
L+ LILAPTRELA Q+ G V+ A +VGGM Q L
Sbjct: 128 -------------LFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISL 174
Query: 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 366
K PHI+VATPGRL + ++ + L + YLV+DE DR+++ P L IL +
Sbjct: 175 GKKPHIIVATPGRLLDHLE--NTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVL-- 230
Query: 367 TETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 426
PR+ R+T++FSAT++ ++
Sbjct: 231 -----PRE--------------------------RRTYLFSATMSSKVE----------- 248
Query: 427 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYYFIL 485
S++R ++ +P V ++ K TL +S + H KD YL Y +
Sbjct: 249 ---------SLQR----ASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDVYLVYLLN 295
Query: 486 QHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 545
++ G++ I T+T+ E+
Sbjct: 296 EYAGQS---------------------AIVFTRTVNET---------------------- 312
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+RL LL L +PLH ++Q RL L +FR ++ IL+ATDVAA
Sbjct: 313 ------------QRLAILLRTLGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAA 360
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
RGLDIP ++ V+++ +P S+ YIHR GRTARA G ++ +I
Sbjct: 361 RGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDI 408
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 35/62 (56%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S LILAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 127 SLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATPG 186
Query: 1413 AL 1414
L
Sbjct: 187 RL 188
>gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 443
Score = 230 bits (586), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 151/455 (33%), Positives = 236/455 (51%), Gaps = 76/455 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ K + I+ A + GFK PT+IQ +P AL A KDIVG A+TGSGKT AF IP+L
Sbjct: 15 FEKLGVDPQIVEACKKLGFKNPTEIQRKAIPEAL-AGKDIVGLAQTGSGKTAAFSIPMLQ 73
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ K SGL + L+LAPTRELA
Sbjct: 74 ALLAK----------PSGL-----------------------------FGLVLAPTRELA 94
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLGHFHL 948
+Q+ + I G VK A +VGG+ T Q L K PHI+V TPGR+ + F+L
Sbjct: 95 VQISDQIEALGAVIGVKCAVLVGGIDTMSQSMALAKKPHIIVGTPGRVVYHLENTKGFNL 154
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L Y V+DE DR++ E+ IL + + R TF+FSAT+T +
Sbjct: 155 KTL---KYFVMDEADRLLGMDFEEEINTILKVI-----PKDRNTFLFSATMTSKV----- 201
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
+K ++ S DP +K + + K TL + I + K+ Y
Sbjct: 202 -----AKLQRASLNDP----------VK----IQVATKYSTVDTLQQEYIFIPYKHKECY 242
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + + G + ++F ++ ++ +L +L L +P++ M+Q +RL +L++F+ Q
Sbjct: 243 LTYILNELAGNSVIIFTSTCAASTKLAIMLRNLSFKAIPINGQMDQSKRLSSLNKFKAQT 302
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDIP ++ VI+Y VP +S+ Y+HR GRTARA G + L+ ++
Sbjct: 303 MDILVATDVAARGLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVTQYDVE 362
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
+Y+++ ++LE+K L +FP ++ + + +R++ A
Sbjct: 363 IYLRIEHALEQK--LEEFPTEQESVLVFSERVNEA 395
Score = 176 bits (446), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 152/518 (29%), Positives = 218/518 (42%), Gaps = 156/518 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ K + I+ A + GFK PT+IQ +P AL A KDIVG A+TGSGKT AF IP+L
Sbjct: 15 FEKLGVDPQIVEACKKLGFKNPTEIQRKAIPEAL-AGKDIVGLAQTGSGKTAAFSIPMLQ 73
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ K SGL + L+LAPTRELA
Sbjct: 74 ALLAK----------PSGL-----------------------------FGLVLAPTRELA 94
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR-LWEFIQLGHFHL 331
+Q+ + I G VK A +VGG+ T Q L K PHI+V TPGR ++ F+L
Sbjct: 95 VQISDQIEALGAVIGVKCAVLVGGIDTMSQSMALAKKPHIIVGTPGRVVYHLENTKGFNL 154
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L Y V+DE DR++ E+ IL + P+
Sbjct: 155 KTL---KYFVMDEADRLLGMDFEEEINTILKVI-------PKD----------------- 187
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R TF+FSAT+T + +K ++ S DP +K
Sbjct: 188 ---------RNTFLFSATMTSKV----------AKLQRASLNDP-VK------------- 214
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
+ + K TL + I + K+ YL Y + + G ++
Sbjct: 215 IQVATKYSTVDTLQQEYIFIPYKHKECYLTYILNELAGNSV------------------- 255
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
I T T C K + + R L F K P
Sbjct: 256 --IIFTST-------CAASTKLAIML--------RNLSF-----------------KAIP 281
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+ + M+Q +RL +L++F+ Q IL+ATDVAARGLDIP ++ VI+Y VP +S+ Y+HR
Sbjct: 282 I--NGQMDQSKRLSSLNKFKAQTMDILVATDVAARGLDIPSVDLVINYDVPVSSKEYMHR 339
Query: 632 SGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEE 669
GRTARA G V L+ ++ + + E+ EE
Sbjct: 340 VGRTARAGRTGRAVTLVTQYDVEIYLRIEHALEQKLEE 377
Score = 61.2 bits (147), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
L+LAPTRELA+Q+ + I G VK A +VGG+ T Q L K PHI+V TPG
Sbjct: 84 GLVLAPTRELAVQISDQIEALGAVIGVKCAVLVGGIDTMSQSMALAKKPHIIVGTPG 140
Score = 43.9 bits (102), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA G + L+ ++ +Y+++ ++LE+K L +FP ++ + + +R++
Sbjct: 336 YMHRVGRTARAGRTGRAVTLVTQYDVEIYLRIEHALEQK--LEEFPTEQESVLVFSERVN 393
Query: 1300 LA 1301
A
Sbjct: 394 EA 395
>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
Length = 501
Score = 230 bits (586), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 241/468 (51%), Gaps = 76/468 (16%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 72 ENTNEDEXFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 127
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF IPIL N+L + E
Sbjct: 128 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 148
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RL + ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T++F
Sbjct: 209 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLF 262
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T SK K+ + ++ +P ++ K TL +
Sbjct: 263 SATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQ 298
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ ++ K++YL Y + + G+T++ F + ++ +RL+ L +L+ S LH +NQ
Sbjct: 299 TLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQN 358
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR+ LD F+ SIL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA
Sbjct: 359 QRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS 418
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
G ++ L+ ++ L +++ L KK LP +D++++ ++ +D A
Sbjct: 419 GKSISLVSQYDLELILRIEEVLGKK--LPKESVDKNIILTLRXSVDKA 464
Score = 183 bits (465), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 221/517 (42%), Gaps = 156/517 (30%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 72 ENTNEDEXFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 127
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF IPIL N+L + E
Sbjct: 128 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 148
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RL + ++ + L K+ +LV+DE DR+++ P
Sbjct: 209 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----------------------- 243
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
+LDR+ +Q R T++FSAT+T SK K+ +
Sbjct: 244 ---------VLDRILKIIPTQERTTYLFSATMT-------------SKIDKLQRA----- 276
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
++ +P ++ K TL ++ ++ K++YL Y + + G+T+
Sbjct: 277 ------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTM------ 324
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
I T+T ++ L CN
Sbjct: 325 ---------------IIFTRTKANAERLSG---------------------LCN------ 342
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
+L+ S LH +NQ QR+ LD F+ SIL+ATDVAARGLDIP ++ V++
Sbjct: 343 -------LLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVN 395
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 396 YDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 432
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 150 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGR 209
Query: 1414 L 1414
L
Sbjct: 210 L 210
>gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi]
gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi]
Length = 518
Score = 230 bits (586), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 174/556 (31%), Positives = 279/556 (50%), Gaps = 95/556 (17%)
Query: 708 LSANTNDPDDQVNKTEEIQSDEP----HSKKLKQKKKKKQTYTSANKELLEVDTSNNEDM 763
+S + D Q+ +EE SDE +++ + + Q+ TS+++E +T E
Sbjct: 1 MSETSEDEQAQLQTSEEELSDEEGQEENAEDVDEDNVDDQSATSSDEE----ETPKAE-- 54
Query: 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823
Q W + ET+ +A + +K P+KIQ +P AL KD++G AETGSGKT AF
Sbjct: 55 --QPLTWKDLGLSETLCKACDELKWKAPSKIQKEAIPVALQG-KDVIGLAETGSGKTGAF 111
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
+PIL + LENP + +AL+L
Sbjct: 112 ALPILHAL---LENP------------------------------------QRYFALVLT 132
Query: 884 PTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ- 942
PTRELA Q+ G +K +VGGM Q L K PHI++ATPGRL + ++
Sbjct: 133 PTRELAFQIGEQFEALGSGIGIKCCVIVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLEN 192
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002
L F+L I YLV+DE DR++ EL IL + + R+TF+FSAT+T
Sbjct: 193 LKGFNLK---AIKYLVMDEADRILNMDFEVELDKILKVL-----PRERRTFLFSATMT-- 242
Query: 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH 1062
KKV K+LQ ++K P V+++ K L + +
Sbjct: 243 --------------KKV-------KKLQRA-SLKDPVKVEVSNKYQTVDQLQQYYLFIPV 280
Query: 1063 DEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
KD YL + + + G + ++FC++ ++ + +L L + +PLH M+Q +RL L+
Sbjct: 281 KYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 340
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
+F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + ++
Sbjct: 341 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITIV 400
Query: 1182 ESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWL 1241
+I LY ++ L K+ LP + +E + +++R+ A+ LE K+ D+
Sbjct: 401 SQYDIELYQRIEQLLGKQ--LPLYKCEEDEVMALQERVAEAQRTAKLEF---KDLEDSKG 455
Query: 1242 HRSG----RTARANNE 1253
++ G RTA ++N+
Sbjct: 456 YKGGRGNKRTAASDNQ 471
Score = 183 bits (465), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 161/570 (28%), Positives = 241/570 (42%), Gaps = 168/570 (29%)
Query: 91 LSANTNDPDDQVNKTEEIQSDEPS----SKKLKQKKKKKQTYTSANKELLEVDTSNNEDM 146
+S + D Q+ +EE SDE ++ + + Q+ TS+++E +T E
Sbjct: 1 MSETSEDEQAQLQTSEEELSDEEGQEENAEDVDEDNVDDQSATSSDEE----ETPKAE-- 54
Query: 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206
Q W + ET+ +A + +K P+KIQ +P AL KD++G AETGSGKT AF
Sbjct: 55 --QPLTWKDLGLSETLCKACDELKWKAPSKIQKEAIPVALQG-KDVIGLAETGSGKTGAF 111
Query: 207 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
+PIL + LENP + +AL+L
Sbjct: 112 ALPILHAL---LENP------------------------------------QRYFALVLT 132
Query: 267 PTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ- 325
PTRELA Q+ G +K +VGGM Q L K PHI++ATPGRL + ++
Sbjct: 133 PTRELAFQIGEQFEALGSGIGIKCCVIVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLEN 192
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385
L F+L I YLV+DE DR++ EL IL + PR+
Sbjct: 193 LKGFNLK---AIKYLVMDEADRILNMDFEVELDKILKVL-------PRE----------- 231
Query: 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 445
R+TF+FSAT+T KKV K+LQ +
Sbjct: 232 ---------------RRTFLFSATMT----------------KKV-------KKLQR-AS 252
Query: 446 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSP 505
+K P V+++ K L + + KD YL + + + G +
Sbjct: 253 LKDPVKVEVSNKYQTVDQLQQYYLFIPVKYKDVYLVHILNELAGNSFM------------ 300
Query: 506 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 565
I C CN+ + L
Sbjct: 301 -------------------IFCST---------------------CNNTVKTALM---LR 317
Query: 566 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625
L + +PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S
Sbjct: 318 ALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHS 377
Query: 626 EIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+ YIHR GRTARA G + ++ +I L
Sbjct: 378 KDYIHRVGRTARAGRSGQAITIVSQYDIEL 407
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+L PTRELA Q+ G +K +VGGM Q L K PHI++ATPG
Sbjct: 126 YFALVLTPTRELAFQIGEQFEALGSGIGIKCCVIVGGMDMVAQGLQLAKKPHIIIATPGR 185
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
L +LK +L K+I+YL + D L +MD ++ + +++ R
Sbjct: 186 LVDHLENLKGFNL-KAIKYL----VMDEADRIL-----NMDFEVELDKILKVLPRERRTF 235
Query: 1469 LMSKALVSKRKELQ 1482
L S + K K+LQ
Sbjct: 236 LFSATMTKKVKKLQ 249
>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 448
Score = 230 bits (586), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 154/462 (33%), Positives = 238/462 (51%), Gaps = 76/462 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + + + Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL
Sbjct: 21 FRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGR-DIIGLAETGSGKTGAFALPILQ 79
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LE+P +LYAL+L PTRELA
Sbjct: 80 TL---LESP------------------------------------QRLYALVLTPTRELA 100
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G VK A +VGG+ Q L K PH+++ATPGRL + ++ F+L
Sbjct: 101 FQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAKKPHVVIATPGRLIDHLENTKGFNL 160
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 161 RAL---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT-------- 204
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K ++R +K P ++ K + L + + KDSY
Sbjct: 205 --------KKVQK----LQRAA----LKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSY 248
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + + G + ++FC++ ++ +R+ LL L + +PLH M+Q +RL +L++F+ ++
Sbjct: 249 LVYILNELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKS 308
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SILLATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G + + ++
Sbjct: 309 RSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVE 368
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
L+ ++ + + KK LP FP E + ++ +R+ A+ +E
Sbjct: 369 LFQRIEHLIGKK--LPAFPTQEEEVMMLNERVSEAQRFARIE 408
Score = 184 bits (467), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 146/504 (28%), Positives = 218/504 (43%), Gaps = 156/504 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + + + Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL
Sbjct: 21 FRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGR-DIIGLAETGSGKTGAFALPILQ 79
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LE+P +LYAL+L PTRELA
Sbjct: 80 TL---LESP------------------------------------QRLYALVLTPTRELA 100
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G VK A +VGG+ Q L K PH+++ATPGRL + ++ F+L
Sbjct: 101 FQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAKKPHVVIATPGRLIDHLENTKGFNL 160
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L YLV+DE DR++ E+ IL + PR
Sbjct: 161 RAL---KYLVMDEADRILNMDFETEVDKILKVI-------PRD----------------- 193
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+TF+FSAT+T KKV K ++R +K P
Sbjct: 194 ---------RKTFLFSATMT----------------KKVQK----LQRAA----LKDPVK 220
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
++ K + L + + KDSYL Y + + G
Sbjct: 221 CAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAG---------------------- 258
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+S++ + C++ ++ +R+ LL L +
Sbjct: 259 ---------------------NSFMIF------------CSTCNNTQRVALLLRNLGFTA 285
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL +L++F+ ++ SILLATDVA+RGLDIP ++ VI++ +P S+ YIHR
Sbjct: 286 IPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHR 345
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTARA G + + ++ L
Sbjct: 346 VGRTARAGRSGKAITFVSQYDVEL 369
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G VK A +VGG+ Q L K PH+++ATPG L
Sbjct: 90 ALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAKKPHVVIATPGRL- 148
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 149 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 200 SATMTKKVQKLQ 211
Score = 42.7 bits (99), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP E + ++ +R+
Sbjct: 341 DYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIGKK--LPAFPTQEEEVMMLNERV 398
Query: 1299 DLAKSIEYLE 1308
A+ +E
Sbjct: 399 SEAQRFARIE 408
>gi|449481708|ref|XP_002195464.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Taeniopygia
guttata]
Length = 450
Score = 229 bits (585), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 239/459 (52%), Gaps = 76/459 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + +A Q G+K PTKIQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCKACDQLGWKVPTKIQIEAIPVALQGR-DVIGLAETGSGKTGAFALPILQAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ +VGG+ T Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQTTVIVGGIDTMSQSLALAKKPHVIIATPGRLVDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+LV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KFLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KDSYL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++ + + KK LP FP+ E + ++ +R+ A+ + +E
Sbjct: 377 RIEHLIGKK--LPAFPMQEEEVMMLTERVAEAQRLARME 413
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 154/535 (28%), Positives = 230/535 (42%), Gaps = 168/535 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + +A Q G+K PTKIQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCKACDQLGWKVPTKIQIEAIPVALQGR-DVIGLAETGSGKTGAFALPILQAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ +VGG+ T Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQTTVIVGGIDTMSQSLALAKKPHVIIATPGRLVDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+LV+DE DR++ E+ IL + PR
Sbjct: 169 ---KFLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KDSYL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ VI++ +P S+ YIHR GR
Sbjct: 294 HGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEADK 677
TARA G ++ + ++ L + F +QEEE ER AEA +
Sbjct: 354 TARAGRSGKSITFVTQYDVELFQRIEHLIGKKLPAFPMQEEEVMMLTERVAEAQR 408
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G V+ +VGG+ T Q L K PH+++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQTTVIVGGIDTMSQSLALAKKPHVIIATPGRL 153
Score = 43.5 bits (101), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L+ ++ + + KK LP FP+ E + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKK--LPAFPMQEEEVMMLTERV 403
Query: 1299 DLAKSIEYLE 1308
A+ + +E
Sbjct: 404 AEAQRLARME 413
>gi|357500169|ref|XP_003620373.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355495388|gb|AES76591.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 502
Score = 229 bits (585), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 163/495 (32%), Positives = 250/495 (50%), Gaps = 84/495 (16%)
Query: 736 KQKKKKKQTYTS-ANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKI 794
K+KK++ Q S A +E L ++ N E M + +PE+++ A + G+K P KI
Sbjct: 45 KEKKRQHQNRKSQAGREKLRMEEENKE-----MKSFKDLGLPESLVEACEKMGWKNPLKI 99
Query: 795 QSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854
Q +P AL KD++G AETGSGKT AF +PIL + LE P
Sbjct: 100 QIEAIPPALEG-KDLIGLAETGSGKTGAFALPILHAL---LEAPRP-------------- 141
Query: 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGM 914
N +A +++PTRELAIQ+ G VK A +VGG+
Sbjct: 142 --------------------NHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGI 181
Query: 915 STEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHF 971
+Q + K PHI+V TPGR+ L H T+ L ++ YLV+DE DR++
Sbjct: 182 DMVQQSVKIAKLPHIIVGTPGRV-----LDHLKNTKGFSLARLKYLVLDEADRLLNEDFE 236
Query: 972 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 1031
L IL + + R+TF+FSAT+T KKV K LQ
Sbjct: 237 ESLNEILGMI-----PRERRTFLFSATMT----------------KKVEK-------LQR 268
Query: 1032 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSV 1090
+ +++P ++ + K TL + KD YL Y + + G T +VF + S
Sbjct: 269 VC-LRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDST 327
Query: 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 1150
+ L +L L +P++ M+Q +RL L++F+ + +ILL TDVA+RGLDIP ++ VI
Sbjct: 328 RLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVI 387
Query: 1151 HYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1210
+Y +P S+ YIHR GRTARA G+ + L+ E+ Y+++ + KK LP++P +E
Sbjct: 388 NYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLIGKK--LPEYPANEE 445
Query: 1211 VLSLIKKRIDLAKSI 1225
+ L+++R+ AK +
Sbjct: 446 EVLLLEERVGEAKRL 460
Score = 184 bits (468), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 155/539 (28%), Positives = 230/539 (42%), Gaps = 164/539 (30%)
Query: 119 KQKKKKKQTYTS-ANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKI 177
K+KK++ Q S A +E L ++ N E M + +PE+++ A + G+K P KI
Sbjct: 45 KEKKRQHQNRKSQAGREKLRMEEENKE-----MKSFKDLGLPESLVEACEKMGWKNPLKI 99
Query: 178 QSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 237
Q +P AL KD++G AETGSGKT AF +PIL + LE P
Sbjct: 100 QIEAIPPALEG-KDLIGLAETGSGKTGAFALPILHAL---LEAPRP-------------- 141
Query: 238 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGM 297
N +A +++PTRELAIQ+ G VK A +VGG+
Sbjct: 142 --------------------NHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGI 181
Query: 298 STEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHF 354
+Q + K PHI+V TPGR+ L H T+ L ++ YLV+DE DR++
Sbjct: 182 DMVQQSVKIAKLPHIIVGTPGRV-----LDHLKNTKGFSLARLKYLVLDEADRLLNEDFE 236
Query: 355 PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 414
L IL + PR+ R+TF+FSAT+T
Sbjct: 237 ESLNEILGMI-------PRE--------------------------RRTFLFSATMT--- 260
Query: 415 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 474
KKV K LQ + +++P ++ + K TL +
Sbjct: 261 -------------KKVEK-------LQRVC-LRNPVKIETSSKYSTVDTLKQQYRFLPAK 299
Query: 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 534
KD YL Y + + G T + T+T
Sbjct: 300 HKDCYLVYILTEMAGST---------------------SMVFTRT--------------- 323
Query: 535 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 594
C+S + L +L L +P++ M+Q +RL L++F+ +
Sbjct: 324 ----------------CDS---TRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGD 364
Query: 595 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+ILL TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+ E+
Sbjct: 365 CNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEL 423
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
A +++PTRELAIQ+ G VK A +VGG+ +Q + K PHI+V TPG
Sbjct: 146 ACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPG 202
Score = 41.6 bits (96), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G+ + L+ E+ Y+++ + KK LP++P +E + L+++R+
Sbjct: 397 DYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLIGKK--LPEYPANEEEVLLLEERV 454
Query: 1299 DLAKSI 1304
AK +
Sbjct: 455 GEAKRL 460
>gi|440796416|gb|ELR17525.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 926
Score = 229 bits (585), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 171/258 (66%), Gaps = 5/258 (1%)
Query: 990 RQTFVFSATLTHSLKNSLNLK-KGQSKSKKVSKGDPSIKRLQDLLNI-KSPKIVDLTEKI 1047
RQTF+FSATLT + + L K + S + + ++ ++ L+ + K++DLT K
Sbjct: 573 RQTFIFSATLTIASQGRAKLGPKPSTNSNRAAVN--ALAQVSKLVGFEREKKVIDLTTKK 630
Query: 1048 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 1107
+ TL E+ I C ++EKD YLYYF QH GRTLVFCNSIS ++RL +L +L L
Sbjct: 631 VVVSTLEEAVIQCLNEEKDYYLYYFAQQHKGRTLVFCNSISCIRRLVPILGLLNVPAWGL 690
Query: 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
HASM QRQRLKNL+RFR+ SIL+ATDVAARGLDIP ++HVIHY +PRT+E+Y+HRSGR
Sbjct: 691 HASMQQRQRLKNLERFRNSTESILIATDVAARGLDIPLVDHVIHYQLPRTAELYVHRSGR 750
Query: 1168 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEY 1227
TARA GL+++L+ D++ Y ++ + L ++ F +D +L + KR++LA+ ++
Sbjct: 751 TARAAASGLSVMLVGPDDMKTYRQICSVLRNGREVEPFVVDRGLLPGVAKRVNLARKLDA 810
Query: 1228 LESKIKKNRP-DNWLHRS 1244
+ ++K + +W ++
Sbjct: 811 VMHDVRKKKTKKDWFQQA 828
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 90/148 (60%), Positives = 114/148 (77%)
Query: 506 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 565
K++DLT K + TL E+ I C ++EKD YLYYF QH GRTLVFCNSIS ++RL +L
Sbjct: 622 KVIDLTTKKVVVSTLEEAVIQCLNEEKDYYLYYFAQQHKGRTLVFCNSISCIRRLVPILG 681
Query: 566 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625
+L LHASM QRQRLKNL+RFR+ SIL+ATDVAARGLDIP ++HVIHY +PRT+
Sbjct: 682 LLNVPAWGLHASMQQRQRLKNLERFRNSTESILIATDVAARGLDIPLVDHVIHYQLPRTA 741
Query: 626 EIYIHRSGRTARANNEGLTVVLIESDEI 653
E+Y+HRSGRTARA GL+V+L+ D++
Sbjct: 742 ELYVHRSGRTARAAASGLSVMLVGPDDM 769
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/266 (39%), Positives = 156/266 (58%), Gaps = 39/266 (14%)
Query: 736 KQKKKKKQTYTSANKELLEVDTSNNEDM---FVQMAEWVKFNIPETIIRALYQKGFKTPT 792
++K+KK+ Y A V T++ ED + ++ W FN+ T++ A+ + F +PT
Sbjct: 225 REKEKKENEYVPAI-----VPTASVEDWKRKWGRLKSWQHFNLHPTLMEAIKEYKFFSPT 279
Query: 793 KIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 852
IQ + +AL KD+VG AETGSGKTLA+G+PIL +KL E++E D
Sbjct: 280 PIQEKALTAALREDKDVVGVAETGSGKTLAYGLPIL----HKLTKKREQEERDG------ 329
Query: 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 912
V+K R +L AL+LAPTRELA+QV + + K+TP+ V V+G
Sbjct: 330 -----------------VEKDR-RLKALLLAPTRELAVQVSDQLKLIAKHTPITVVPVIG 371
Query: 913 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
G++ +KQ+R+L+K P I+VATPGRLWE I G L + + +LVIDE DRM+E+GHF
Sbjct: 372 GLAPQKQVRLLSKKPEIVVATPGRLWELINGGDPFLGDCTGLEFLVIDEADRMVETGHFR 431
Query: 973 ELKNILDRVTMTETSQPRQTFVFSAT 998
ELK+I +T+ + R+ V +T
Sbjct: 432 ELKSI---ITLIQHPASRELIVLPST 454
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 161/274 (58%), Gaps = 40/274 (14%)
Query: 119 KQKKKKKQTYTSANKELLEVDTSNNEDM---FVQMAEWVKFNIPETIIRALYQKGFKTPT 175
++K+KK+ Y A V T++ ED + ++ W FN+ T++ A+ + F +PT
Sbjct: 225 REKEKKENEYVPAI-----VPTASVEDWKRKWGRLKSWQHFNLHPTLMEAIKEYKFFSPT 279
Query: 176 KIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 235
IQ + +AL KD+VG AETGSGKTLA+G+PIL +KL E++E D
Sbjct: 280 PIQEKALTAALREDKDVVGVAETGSGKTLAYGLPIL----HKLTKKREQEERDG------ 329
Query: 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 295
V+K R +L AL+LAPTRELA+QV + + K+TP+ V V+G
Sbjct: 330 -----------------VEKDR-RLKALLLAPTRELAVQVSDQLKLIAKHTPITVVPVIG 371
Query: 296 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 355
G++ +KQ+R+L+K P I+VATPGRLWE I G L + + +LVIDE DRM+E+GHF
Sbjct: 372 GLAPQKQVRLLSKKPEIVVATPGRLWELINGGDPFLGDCTGLEFLVIDEADRMVETGHFR 431
Query: 356 ELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
ELK+I +T+ + R+ ++ P+L+ +L
Sbjct: 432 ELKSI---ITLIQHPASRELIVLP-STPDLRKVL 461
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 46/59 (77%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+LAPTRELA+QV + + K+TP+ V V+GG++ +KQ+R+L+K P I+VATPG L
Sbjct: 338 ALLLAPTRELAVQVSDQLKLIAKHTPITVVPVIGGLAPQKQVRLLSKKPEIVVATPGRL 396
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTARA GL+++L+ D++ Y ++ + L ++ F +D +L + KR++
Sbjct: 744 YVHRSGRTARAAASGLSVMLVGPDDMKTYRQICSVLRNGREVEPFVVDRGLLPGVAKRVN 803
Query: 1300 LAKSIEYLESKIKKNRP-DNWLEKAAKDM 1327
LA+ ++ + ++K + +W ++AA++M
Sbjct: 804 LARKLDAVMHDVRKKKTKKDWFQQAAEEM 832
>gi|160358662|sp|A6ZSX1.1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
[Saccharomyces cerevisiae RM11-1a]
gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
Length = 501
Score = 229 bits (585), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 241/468 (51%), Gaps = 76/468 (16%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 72 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 127
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF IPIL N+L + E
Sbjct: 128 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 148
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RL + ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T++F
Sbjct: 209 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLF 262
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T SK K+ + ++ +P ++ K TL +
Sbjct: 263 SATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQ 298
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ ++ K++YL Y + + G+T++ F + ++ +RL+ L +L+ S LH +NQ
Sbjct: 299 TLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQN 358
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR+ LD F+ SIL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA
Sbjct: 359 QRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS 418
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
G ++ L+ ++ L +++ L KK LP +D++++ ++ +D A
Sbjct: 419 GKSISLVSQYDLELILRIEEVLGKK--LPKESVDKNIILTLRDSVDKA 464
Score = 183 bits (464), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 221/517 (42%), Gaps = 156/517 (30%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 72 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 127
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF IPIL N+L + E
Sbjct: 128 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 148
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RL + ++ + L K+ +LV+DE DR+++ P
Sbjct: 209 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----------------------- 243
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
+LDR+ +Q R T++FSAT+T SK K+ +
Sbjct: 244 ---------VLDRILKIIPTQERTTYLFSATMT-------------SKIDKLQRA----- 276
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
++ +P ++ K TL ++ ++ K++YL Y + + G+T+
Sbjct: 277 ------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTM------ 324
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
I T+T ++ L CN
Sbjct: 325 ---------------IIFTRTKANAERLSG---------------------LCN------ 342
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
+L+ S LH +NQ QR+ LD F+ SIL+ATDVAARGLDIP ++ V++
Sbjct: 343 -------LLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVN 395
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 396 YDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 432
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 150 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGR 209
Query: 1414 L 1414
L
Sbjct: 210 L 210
>gi|363750628|ref|XP_003645531.1| hypothetical protein Ecym_3217 [Eremothecium cymbalariae DBVPG#7215]
gi|356889165|gb|AET38714.1| Hypothetical protein Ecym_3217 [Eremothecium cymbalariae DBVPG#7215]
Length = 486
Score = 229 bits (585), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 169/535 (31%), Positives = 268/535 (50%), Gaps = 82/535 (15%)
Query: 720 NKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETI 779
N E+ Q D+ L + K+ ++T S E+L+ +T+ N + F + +I +
Sbjct: 26 NAIEKHQQDK--ESYLDKDKENQETSVSGPDEVLDNETTENFESFRDL------DIVPEL 77
Query: 780 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 839
I A F PT IQS +P AL DI+G A+TGSGKT AF IPIL N+L +
Sbjct: 78 IEACENLKFTKPTPIQSKAIPPALQG-NDIIGLAQTGSGKTAAFAIPIL----NQLWHDQ 132
Query: 840 EEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDA 899
+ YA ILAPTRELA Q++
Sbjct: 133 QP-----------------------------------YYACILAPTRELAQQIKETFDSL 157
Query: 900 GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 959
G V+ C++GGM+ Q R L + PHI++ATPGRL + ++ + L K+ +LVI
Sbjct: 158 GSLMGVRSTCIMGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGFSLRKLRFLVI 215
Query: 960 DETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 1019
DE DR+++ E +LDR+ ++ R T++FSAT+T SK K+
Sbjct: 216 DEADRLLDM----EFGAVLDRILKNIPTKGRTTYLFSATMT-------------SKIDKL 258
Query: 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 1079
+ ++ +P ++ K TL ++ ++ K++YL Y + + G+
Sbjct: 259 QRA-----------SLTNPVKCSVSNKYQTVDTLIQTLMVVPGGLKNTYLIYLLNEFIGK 307
Query: 1080 -TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
T+VF + ++ +R++ L +L+ S LH +NQ QR LD F+ SIL+ATDVAA
Sbjct: 308 STIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGRRSILVATDVAA 367
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L +++ + L K
Sbjct: 368 RGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGK 427
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHRSGRTARANN 1252
K LP I+++++ ++ +D A +E ++ K + R GR A N
Sbjct: 428 K--LPKEDINKNMILSLRDSVDKANGEVVMELNRRNKEKQARGKGRRGRMASKEN 480
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 159/553 (28%), Positives = 242/553 (43%), Gaps = 161/553 (29%)
Query: 103 NKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETI 162
N E+ Q D+ S L + K+ ++T S E+L+ +T+ N + F + +I +
Sbjct: 26 NAIEKHQQDKESY--LDKDKENQETSVSGPDEVLDNETTENFESFRDL------DIVPEL 77
Query: 163 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 222
I A F PT IQS +P AL DI+G A+TGSGKT AF IPIL N+L +
Sbjct: 78 IEACENLKFTKPTPIQSKAIPPALQG-NDIIGLAQTGSGKTAAFAIPIL----NQLWHDQ 132
Query: 223 EEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDA 282
+ YA ILAPTRELA Q++
Sbjct: 133 QP-----------------------------------YYACILAPTRELAQQIKETFDSL 157
Query: 283 GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 342
G V+ C++GGM+ Q R L + PHI++ATPGRL + ++ + L K+ +LVI
Sbjct: 158 GSLMGVRSTCIMGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGFSLRKLRFLVI 215
Query: 343 DETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402
DE DR+++ E +LDR+ LKNI ++ R
Sbjct: 216 DEADRLLDM----EFGAVLDRI--------------------LKNI--------PTKGRT 243
Query: 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
T++FSAT+T SK K+ + ++ +P ++ K
Sbjct: 244 TYLFSATMT-------------SKIDKLQRA-----------SLTNPVKCSVSNKYQTVD 279
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
TL ++ ++ K++YL Y + + G++ T T
Sbjct: 280 TLIQTLMVVPGGLKNTYLIYLLNEFIGKS-------------------------TIVFTR 314
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+K ++ +R++ L +L+ S LH +NQ Q
Sbjct: 315 TK------------------------------ANAERISGLCNLLEFSATALHGDLNQNQ 344
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
R LD F+ SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G
Sbjct: 345 RTGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSG 404
Query: 643 LTVVLIESDEIPL 655
++ L+ ++ L
Sbjct: 405 KSISLVSQYDLEL 417
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C++GGM+ Q R L + PHI++ATPG
Sbjct: 135 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIMGGMNMMDQARDLMRKPHIIIATPGR 194
Query: 1414 L 1414
L
Sbjct: 195 L 195
>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
Length = 501
Score = 229 bits (585), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 241/468 (51%), Gaps = 76/468 (16%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 72 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 127
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF IPIL N+L + E
Sbjct: 128 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 148
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RL + ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T++F
Sbjct: 209 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLF 262
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T SK K+ + ++ +P ++ K TL +
Sbjct: 263 SATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQ 298
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ ++ K++YL Y + + G+T++ F + ++ +RL+ L +L+ S LH +NQ
Sbjct: 299 TLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQN 358
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR+ LD F+ SIL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA
Sbjct: 359 QRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS 418
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
G ++ L+ ++ L +++ L KK LP +D++++ ++ +D A
Sbjct: 419 GKSISLVSQYDLELILRIEEVLGKK--LPKESVDKNIILTLRDSVDKA 464
Score = 183 bits (464), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 221/517 (42%), Gaps = 156/517 (30%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 72 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 127
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF IPIL N+L + E
Sbjct: 128 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 148
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RL + ++ + L K+ +LV+DE DR+++ P
Sbjct: 209 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----------------------- 243
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
+LDR+ +Q R T++FSAT+T SK K+ +
Sbjct: 244 ---------VLDRILKIIPTQERTTYLFSATMT-------------SKIDKLQRA----- 276
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
++ +P ++ K TL ++ ++ K++YL Y + + G+T+
Sbjct: 277 ------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTM------ 324
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
I T+T ++ L CN
Sbjct: 325 ---------------IIFTRTKANAERLSG---------------------LCN------ 342
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
+L+ S LH +NQ QR+ LD F+ SIL+ATDVAARGLDIP ++ V++
Sbjct: 343 -------LLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVN 395
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 396 YDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 432
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 150 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGR 209
Query: 1414 L 1414
L
Sbjct: 210 L 210
>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
Length = 543
Score = 229 bits (584), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 242/468 (51%), Gaps = 76/468 (16%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 114 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 169
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF IPIL N+L + E
Sbjct: 170 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 190
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 191 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 250
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RL + ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T++F
Sbjct: 251 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLF 304
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T SK K+ + ++ +P ++ K TL +
Sbjct: 305 SATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQ 340
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ ++ K++YL Y + + G+T++ F + ++ +RL+ L +L+ S LH +NQ
Sbjct: 341 TLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQN 400
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR+ +LD F+ SIL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA
Sbjct: 401 QRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS 460
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
G ++ L+ ++ L +++ L KK LP +D++++ ++ +D A
Sbjct: 461 GKSISLVSQYDLELILRIEEVLGKK--LPKESVDKNIILTLRDSVDKA 506
Score = 183 bits (464), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 222/517 (42%), Gaps = 156/517 (30%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 114 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 169
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF IPIL N+L + E
Sbjct: 170 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 190
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 191 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 250
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RL + ++ + L K+ +LV+DE DR+++ P
Sbjct: 251 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----------------------- 285
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
+LDR+ +Q R T++FSAT+T SK K+ +
Sbjct: 286 ---------VLDRILKIIPTQERTTYLFSATMT-------------SKIDKLQRA----- 318
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
++ +P ++ K TL ++ ++ K++YL Y + + G+T+
Sbjct: 319 ------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTM------ 366
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
I T+T ++ L CN
Sbjct: 367 ---------------IIFTRTKANAERLSG---------------------LCN------ 384
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
+L+ S LH +NQ QR+ +LD F+ SIL+ATDVAARGLDIP ++ V++
Sbjct: 385 -------LLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVN 437
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 438 YDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 474
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 192 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGR 251
Query: 1414 L 1414
L
Sbjct: 252 L 252
>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
Length = 515
Score = 229 bits (584), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 157/468 (33%), Positives = 239/468 (51%), Gaps = 76/468 (16%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
Q+ W + ET+ +A + +K P+KIQ +P AL KDI+G AETGSGKT AF +
Sbjct: 57 QLQTWKDLGLNETLCKACEELKWKAPSKIQKEAIPVALQG-KDIIGLAETGSGKTGAFAL 115
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
PIL + LENP + +AL+L PT
Sbjct: 116 PILHAL---LENP------------------------------------QRYFALVLTPT 136
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LG 944
RELA Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ L
Sbjct: 137 RELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENLK 196
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004
F+L I YLV+DE DR++ EL IL + + R+TF+FSAT+T
Sbjct: 197 GFNLK---AIKYLVMDEADRILNMDFEVELDKILKVL-----PRERRTFLFSATMT---- 244
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
KKV K+LQ ++K P V+++ K L + I
Sbjct: 245 ------------KKV-------KKLQRA-SLKDPVKVEVSNKYQTVDQLQQYYIFIPVKY 284
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD YL + + + G + ++FC++ ++ + +L L + +PLH M+Q +RL L++F
Sbjct: 285 KDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKF 344
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + ++
Sbjct: 345 KAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQ 404
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+I LY ++ L K+ LP + +E + +++R+ A+ LE K
Sbjct: 405 YDIELYQRIEQLLGKQ--LPLYKCEEDEVMALQERVAEAQRTAKLELK 450
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 148/508 (29%), Positives = 220/508 (43%), Gaps = 156/508 (30%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
Q+ W + ET+ +A + +K P+KIQ +P AL KDI+G AETGSGKT AF +
Sbjct: 57 QLQTWKDLGLNETLCKACEELKWKAPSKIQKEAIPVALQG-KDIIGLAETGSGKTGAFAL 115
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
PIL + LENP + +AL+L PT
Sbjct: 116 PILHAL---LENP------------------------------------QRYFALVLTPT 136
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LG 327
RELA Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ L
Sbjct: 137 RELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENLK 196
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
F+L I YLV+DE DR++ EL IL + PR+
Sbjct: 197 GFNLK---AIKYLVMDEADRILNMDFEVELDKILKVL-------PRE------------- 233
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+TF+FSAT+T KKV K+LQ ++K
Sbjct: 234 -------------RRTFLFSATMT----------------KKV-------KKLQR-ASLK 256
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
P V+++ K L + I KD YL + + + G
Sbjct: 257 DPVKVEVSNKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAG------------------ 298
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
+S++ + C++ ++ + +L L
Sbjct: 299 -------------------------NSFMIF------------CSTCNNTVKTALMLRAL 321
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+ +PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+
Sbjct: 322 GLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKD 381
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIPL 655
YIHR GRTARA G + ++ +I L
Sbjct: 382 YIHRVGRTARAGRSGQAITMVTQYDIEL 409
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG
Sbjct: 128 YFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGR 187
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
L +LK +L K+I+YL + D L +MD ++ + +++ R
Sbjct: 188 LVDHLENLKGFNL-KAIKYLVM----DEADRIL-----NMDFEVELDKILKVLPRERRTF 237
Query: 1469 LMSKALVSKRKELQ 1482
L S + K K+LQ
Sbjct: 238 LFSATMTKKVKKLQ 251
>gi|349578615|dbj|GAA23780.1| K7_Rrp3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 501
Score = 229 bits (584), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 241/468 (51%), Gaps = 76/468 (16%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 72 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 127
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF IPIL N+L + E
Sbjct: 128 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 148
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIVIATPG 208
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RL + ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T++F
Sbjct: 209 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLF 262
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T SK K+ + ++ +P ++ K TL +
Sbjct: 263 SATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQ 298
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ ++ K++YL Y + + G+T++ F + ++ +RL+ L +L+ S LH +NQ
Sbjct: 299 TLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQN 358
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR+ LD F+ SIL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA
Sbjct: 359 QRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS 418
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
G ++ L+ ++ L +++ L KK LP +D++++ ++ +D A
Sbjct: 419 GKSISLVSQYDLELILRIEEVLGKK--LPKESVDKNIILTLRDSVDKA 464
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 221/517 (42%), Gaps = 156/517 (30%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 72 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 127
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF IPIL N+L + E
Sbjct: 128 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 148
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIVIATPG 208
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RL + ++ + L K+ +LV+DE DR+++ P
Sbjct: 209 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----------------------- 243
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
+LDR+ +Q R T++FSAT+T SK K+ +
Sbjct: 244 ---------VLDRILKIIPTQERTTYLFSATMT-------------SKIDKLQRA----- 276
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
++ +P ++ K TL ++ ++ K++YL Y + + G+T+
Sbjct: 277 ------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTM------ 324
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
I T+T ++ L CN
Sbjct: 325 ---------------IIFTRTKANAERLSG---------------------LCN------ 342
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
+L+ S LH +NQ QR+ LD F+ SIL+ATDVAARGLDIP ++ V++
Sbjct: 343 -------LLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVN 395
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 396 YDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 432
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 150 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIVIATPGR 209
Query: 1414 L 1414
L
Sbjct: 210 L 210
>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
gi|365765178|gb|EHN06690.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 501
Score = 229 bits (584), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 241/468 (51%), Gaps = 76/468 (16%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 72 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 127
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF IPIL N+L + E
Sbjct: 128 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 148
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RL + ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T++F
Sbjct: 209 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLF 262
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T SK K+ + ++ +P ++ K TL +
Sbjct: 263 SATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQ 298
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ ++ K++YL Y + + G+T++ F + ++ +RL+ L +L+ S LH +NQ
Sbjct: 299 TLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQN 358
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR+ LD F+ SIL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA
Sbjct: 359 QRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS 418
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
G ++ L+ ++ L +++ L KK LP +D++++ ++ +D A
Sbjct: 419 GKSISLVSQYDLELILRIEEVLGKK--LPKESVDKNIILTLRDSVDKA 464
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 221/517 (42%), Gaps = 156/517 (30%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 72 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 127
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF IPIL N+L + E
Sbjct: 128 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 148
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RL + ++ + L K+ +LV+DE DR+++ P
Sbjct: 209 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----------------------- 243
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
+LDR+ +Q R T++FSAT+T SK K+ +
Sbjct: 244 ---------VLDRILKIIPTQERTTYLFSATMT-------------SKIDKLQRA----- 276
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
++ +P ++ K TL ++ ++ K++YL Y + + G+T+
Sbjct: 277 ------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTM------ 324
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
I T+T ++ L CN
Sbjct: 325 ---------------IIFTRTKANAERLSG---------------------LCN------ 342
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
+L+ S LH +NQ QR+ LD F+ SIL+ATDVAARGLDIP ++ V++
Sbjct: 343 -------LLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVN 395
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 396 YDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 432
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 150 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGR 209
Query: 1414 L 1414
L
Sbjct: 210 L 210
>gi|448090292|ref|XP_004197032.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|448094692|ref|XP_004198063.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359378454|emb|CCE84713.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359379485|emb|CCE83682.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
Length = 500
Score = 229 bits (583), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 159/476 (33%), Positives = 250/476 (52%), Gaps = 80/476 (16%)
Query: 736 KQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN----IPETIIRALYQKGFKTP 791
KQ+K++K+ S N+ + + ++ E + V+ ++ F+ IPE ++ + + F P
Sbjct: 55 KQEKREKREERSKNEAKQDSEDTSKE-VTVEESKVESFSELNLIPE-LLETINEMKFTKP 112
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851
T IQ+ +P AL KDI+G A+TGSGKT AF IPIL + +
Sbjct: 113 TPIQAEAIPHALEG-KDIIGLAQTGSGKTAAFAIPILQSLWD------------------ 153
Query: 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 911
A T F L+LAPTRELA Q++ G ++ C+V
Sbjct: 154 ------------AQTPYF---------GLVLAPTRELAYQIKETFDALGSSMGLRTVCIV 192
Query: 912 GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 971
GGM Q R L + PHILVATPGR+ + ++ H L + YLV+DE DR+++
Sbjct: 193 GGMDMMDQARDLMRRPHILVATPGRIMDHLE--HTKGFSLKNLKYLVMDEADRLLDMDFG 250
Query: 972 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 1031
P L IL +V T+ R T++FSAT+T SK +K+ +
Sbjct: 251 PALDKIL-KVIPTQ----RTTYLFSATMT-------------SKVEKLQRA--------- 283
Query: 1032 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSV 1090
++ +P V ++ K L +S +L K++YL + + + G+++ VF + +
Sbjct: 284 --SLHNPVKVAVSTKYQTADNLVQSMMLVSDGYKNTYLIHLLNEFVGKSIIVFTRTCAHS 341
Query: 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 1150
+R + L +L S +PLH ++Q QRL +L++F+ ++IL+ATDVAARGLDIP ++ VI
Sbjct: 342 QRTSLLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKSNILVATDVAARGLDIPSVDVVI 401
Query: 1151 HYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206
+Y +P S+ YIHR GRTARA G ++ L+ ++ LY+++ N L KK LP P
Sbjct: 402 NYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLELYLRIENVLGKK--LPKDP 455
Score = 189 bits (481), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 156/541 (28%), Positives = 241/541 (44%), Gaps = 160/541 (29%)
Query: 119 KQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN----IPETIIRALYQKGFKTP 174
KQ+K++K+ S N+ + + ++ E + V+ ++ F+ IPE ++ + + F P
Sbjct: 55 KQEKREKREERSKNEAKQDSEDTSKE-VTVEESKVESFSELNLIPE-LLETINEMKFTKP 112
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234
T IQ+ +P AL KDI+G A+TGSGKT AF IPIL + +
Sbjct: 113 TPIQAEAIPHALEG-KDIIGLAQTGSGKTAAFAIPILQSLWD------------------ 153
Query: 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 294
A T F L+LAPTRELA Q++ G ++ C+V
Sbjct: 154 ------------AQTPYF---------GLVLAPTRELAYQIKETFDALGSSMGLRTVCIV 192
Query: 295 GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 354
GGM Q R L + PHILVATPGR+ + ++ H L + YLV+DE DR+++
Sbjct: 193 GGMDMMDQARDLMRRPHILVATPGRIMDHLE--HTKGFSLKNLKYLVMDEADRLLDMDFG 250
Query: 355 PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 414
P L IL + P Q R T++FSAT+T
Sbjct: 251 PALDKILKVI-------PTQ--------------------------RTTYLFSATMT--- 274
Query: 415 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 474
SK +K+ + ++ +P V ++ K L +S +L
Sbjct: 275 ----------SKVEKLQRA-----------SLHNPVKVAVSTKYQTADNLVQSMMLVSDG 313
Query: 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 534
K++YL + + + G+++ I T+T C H ++ S
Sbjct: 314 YKNTYLIHLLNEFVGKSI---------------------IVFTRT-------CAHSQRTS 345
Query: 535 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 594
L R L F S +PLH ++Q QRL +L++F+
Sbjct: 346 LL--------ARILGF-------------------SAVPLHGQLSQSQRLGSLNKFKSGK 378
Query: 595 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
++IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++
Sbjct: 379 SNILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLE 438
Query: 655 L 655
L
Sbjct: 439 L 439
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 1350 LRYSWDA------LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
L+ WDA L+LAPTRELA Q++ G ++ C+VGGM Q R L +
Sbjct: 148 LQSLWDAQTPYFGLVLAPTRELAYQIKETFDALGSSMGLRTVCIVGGMDMMDQARDLMRR 207
Query: 1404 PHILVATPG 1412
PHILVATPG
Sbjct: 208 PHILVATPG 216
>gi|380492419|emb|CCF34618.1| ATP-dependent rRNA helicase RRP3 [Colletotrichum higginsianum]
Length = 481
Score = 229 bits (583), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/464 (30%), Positives = 236/464 (50%), Gaps = 81/464 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ +++ A G+ PT IQ+ +P AL A +DI+G AETGSGKT AF +P++ +
Sbjct: 57 LGVVDSLCDACANLGYTKPTPIQAQSIPHAL-ANRDIIGLAETGSGKTAAFALPVIQAL- 114
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P + L+LAPTRELA Q+
Sbjct: 115 --LEKP------------------------------------QAFFGLVLAPTRELAAQI 136
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A +VGG+ Q L K PH+++ATPGRL + H T+
Sbjct: 137 GQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKPHVIIATPGRLVD-----HLEKTKGF 191
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + YLV+DE DR+++ P + IL V + R+TF+FSAT++ ++
Sbjct: 192 SLRSLKYLVMDEADRLLDMDFGPSIDKILKFV-----PRERRTFLFSATMSSKIE----- 241
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSY 1068
S++R +++ P V ++ K TL + + H +KD +
Sbjct: 242 ---------------SLQRA----SLRDPVRVSISSNKYQTVSTLLQYYLFIPHTQKDVH 282
Query: 1069 LYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + +H G+ ++F +++ +RL LL L +PLH +NQ RL L++FR
Sbjct: 283 LIYLLNEHAGKKIMIFTRTVAETQRLAILLRSLGFGAIPLHGQLNQTARLGALNKFRTGT 342
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL+ATDVAARGLD+P ++ V+++ +P+ S+ +IHR GRTARA G+ L L+ ++
Sbjct: 343 RSILVATDVAARGLDVPAVDVVVNHDLPQDSKTFIHRIGRTARAGKSGIALSLVTQYDLE 402
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+++++ +L KK+D ++P + + + + R++ A+ +E K
Sbjct: 403 IFLRIEAALGKKLD--EYPTQKDEVMVFQNRVEEAQRHARMEMK 444
Score = 183 bits (464), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 136/497 (27%), Positives = 212/497 (42%), Gaps = 161/497 (32%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ +++ A G+ PT IQ+ +P AL A +DI+G AETGSGKT AF +P++ +
Sbjct: 57 LGVVDSLCDACANLGYTKPTPIQAQSIPHAL-ANRDIIGLAETGSGKTAAFALPVIQAL- 114
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P + L+LAPTRELA Q+
Sbjct: 115 --LEKP------------------------------------QAFFGLVLAPTRELAAQI 136
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A +VGG+ Q L K PH+++ATPGRL + H T+
Sbjct: 137 GQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKPHVIIATPGRLVD-----HLEKTKGF 191
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YLV+DE DR+++ P + IL V PR+
Sbjct: 192 SLRSLKYLVMDEADRLLDMDFGPSIDKILKFV-------PRE------------------ 226
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+TF+FSAT++ ++ S++R +++ P V
Sbjct: 227 --------RRTFLFSATMSSKIE--------------------SLQR----ASLRDPVRV 254
Query: 453 DLTE-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
++ K TL + + H +KD +L Y + +H G+ +
Sbjct: 255 SISSNKYQTVSTLLQYYLFIPHTQKDVHLIYLLNEHAGKKI------------------- 295
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+ T+T+ E+ +RL LL L
Sbjct: 296 --MIFTRTVAET----------------------------------QRLAILLRSLGFGA 319
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH +NQ RL L++FR SIL+ATDVAARGLD+P ++ V+++ +P+ S+ +IHR
Sbjct: 320 IPLHGQLNQTARLGALNKFRTGTRSILVATDVAARGLDVPAVDVVVNHDLPQDSKTFIHR 379
Query: 632 SGRTARANNEGLTVVLI 648
GRTARA G+ + L+
Sbjct: 380 IGRTARAGKSGIALSLV 396
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ L+LAPTRELA Q+ G ++ A +VGG+ Q L K PH+++ATPG
Sbjct: 120 AFFGLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKPHVIIATPG 179
Query: 1413 AL-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSREN 1467
L K L +S++YL + D L DMD + +++ R
Sbjct: 180 RLVDHLEKTKGFSL-RSLKYL----VMDEADRLL-----DMDFGPSIDKILKFVPRERRT 229
Query: 1468 ALMSKALVSKRKELQ 1482
L S + SK + LQ
Sbjct: 230 FLFSATMSSKIESLQ 244
Score = 42.4 bits (98), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
++HR GRTARA G+ L L+ ++ +++++ +L KK+D ++P + + + + R+
Sbjct: 375 TFIHRIGRTARAGKSGIALSLVTQYDLEIFLRIEAALGKKLD--EYPTQKDEVMVFQNRV 432
Query: 1299 DLAKSIEYLESK 1310
+ A+ +E K
Sbjct: 433 EEAQRHARMEMK 444
>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
Length = 543
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 241/468 (51%), Gaps = 76/468 (16%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 114 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 169
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF IPIL N+L + E
Sbjct: 170 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 190
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 191 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 250
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RL + ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T++F
Sbjct: 251 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLF 304
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T SK K+ + ++ +P ++ K TL +
Sbjct: 305 SATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQ 340
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ ++ K++YL Y + + G+T++ F + ++ +RL+ L +L+ S LH +NQ
Sbjct: 341 TLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQN 400
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR+ LD F+ SIL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA
Sbjct: 401 QRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS 460
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
G ++ L+ ++ L +++ L KK LP +D++++ ++ +D A
Sbjct: 461 GKSISLVSQYDLELILRIEEVLGKK--LPKESVDKNIILTLRGSVDKA 506
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 221/517 (42%), Gaps = 156/517 (30%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 114 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 169
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF IPIL N+L + E
Sbjct: 170 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 190
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 191 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 250
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RL + ++ + L K+ +LV+DE DR+++ P
Sbjct: 251 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----------------------- 285
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
+LDR+ +Q R T++FSAT+T SK K+ +
Sbjct: 286 ---------VLDRILKIIPTQERTTYLFSATMT-------------SKIDKLQRA----- 318
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
++ +P ++ K TL ++ ++ K++YL Y + + G+T+
Sbjct: 319 ------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTM------ 366
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
I T+T ++ L CN
Sbjct: 367 ---------------IIFTRTKANAERLSG---------------------LCN------ 384
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
+L+ S LH +NQ QR+ LD F+ SIL+ATDVAARGLDIP ++ V++
Sbjct: 385 -------LLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVN 437
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 438 YDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 474
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 192 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGR 251
Query: 1414 L 1414
L
Sbjct: 252 L 252
>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 543
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 241/468 (51%), Gaps = 76/468 (16%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 114 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 169
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF IPIL N+L + E
Sbjct: 170 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 190
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 191 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 250
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RL + ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T++F
Sbjct: 251 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLF 304
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T SK K+ + ++ +P ++ K TL +
Sbjct: 305 SATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQ 340
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ ++ K++YL Y + + G+T++ F + ++ +RL+ L +L+ S LH +NQ
Sbjct: 341 TLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQN 400
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR+ LD F+ SIL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA
Sbjct: 401 QRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS 460
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
G ++ L+ ++ L +++ L KK LP +D++++ ++ +D A
Sbjct: 461 GKSISLVSQYDLELILRIEEVLGKK--LPKESVDKNIILTLRDSVDKA 506
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 221/517 (42%), Gaps = 156/517 (30%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 114 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 169
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF IPIL N+L + E
Sbjct: 170 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 190
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 191 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 250
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RL + ++ + L K+ +LV+DE DR+++ P
Sbjct: 251 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----------------------- 285
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
+LDR+ +Q R T++FSAT+T SK K+ +
Sbjct: 286 ---------VLDRILKIIPTQERTTYLFSATMT-------------SKIDKLQRA----- 318
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
++ +P ++ K TL ++ ++ K++YL Y + + G+T+
Sbjct: 319 ------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTM------ 366
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
I T+T ++ L CN
Sbjct: 367 ---------------IIFTRTKANAERLSG---------------------LCN------ 384
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
+L+ S LH +NQ QR+ LD F+ SIL+ATDVAARGLDIP ++ V++
Sbjct: 385 -------LLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVN 437
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 438 YDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 474
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 192 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGR 251
Query: 1414 L 1414
L
Sbjct: 252 L 252
>gi|365760375|gb|EHN02100.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 503
Score = 228 bits (582), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 154/470 (32%), Positives = 240/470 (51%), Gaps = 76/470 (16%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
E D +N + F E N+ +I+A + PT IQS +P AL DI+G A
Sbjct: 72 ENDNANEGESFESFNE---LNLVPELIQACKNLNYSKPTPIQSKSIPPALKGH-DIIGLA 127
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
+TGSGKT AF IPIL N+L + E
Sbjct: 128 QTGSGKTAAFAIPIL----NRLWHDQEP-------------------------------- 151
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++AT
Sbjct: 152 ---YYACILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIAT 208
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRL + ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T+
Sbjct: 209 PGRLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTY 262
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 1053
+FSAT+T SK K+ + ++ +P ++ K TL
Sbjct: 263 LFSATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTL 298
Query: 1054 TESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
++ ++ K++YL Y + + G+T++ F + ++ +RL+ L +L+ S LH +N
Sbjct: 299 VQALMVVPGGLKNTYLIYLLNESIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLN 358
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q QR+ LD F+ SIL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA
Sbjct: 359 QNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAG 418
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
G ++ L+ ++ L +++ L +K LP +D+S++ ++ +D A
Sbjct: 419 RSGKSISLVSQYDLELILRIEEVLGRK--LPKENVDKSIILTLRDSVDKA 466
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 148/519 (28%), Positives = 220/519 (42%), Gaps = 156/519 (30%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
E D +N + F E N+ +I+A + PT IQS +P AL DI+G A
Sbjct: 72 ENDNANEGESFESFNE---LNLVPELIQACKNLNYSKPTPIQSKSIPPALKGH-DIIGLA 127
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
+TGSGKT AF IPIL N+L + E
Sbjct: 128 QTGSGKTAAFAIPIL----NRLWHDQEP-------------------------------- 151
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++AT
Sbjct: 152 ---YYACILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIAT 208
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRL + ++ + L K+ +LV+DE DR+++ P
Sbjct: 209 PGRLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP--------------------- 245
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
+LDR+ +Q R T++FSAT+T SK K+ +
Sbjct: 246 -----------VLDRILKIIPTQERTTYLFSATMT-------------SKIDKLQRA--- 278
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
++ +P ++ K TL ++ ++ K++YL Y + + G+T+
Sbjct: 279 --------SLTNPVKCAVSNKYQTVDTLVQALMVVPGGLKNTYLIYLLNESIGKTM---- 326
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556
I T+T ++ L CN
Sbjct: 327 -----------------IIFTRTKANAERLSG---------------------LCN---- 344
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616
+L+ S LH +NQ QR+ LD F+ SIL+ATDVAARGLDIP ++ V
Sbjct: 345 ---------LLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIV 395
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
++Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 396 VNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 434
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 152 YYACILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGR 211
Query: 1414 L 1414
L
Sbjct: 212 L 212
>gi|345570196|gb|EGX53021.1| hypothetical protein AOL_s00007g357 [Arthrobotrys oligospora ATCC
24927]
Length = 523
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 166/530 (31%), Positives = 261/530 (49%), Gaps = 88/530 (16%)
Query: 689 SKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKK-------KK 741
+KK+K+ + QN ++ V + + +D + K + Q+ S K K KK
Sbjct: 9 TKKRKISKPQNEDEL-VPSTTPSLSDLVASIKKNTQAQAQNASSGKSSSTKNESDGDVKK 67
Query: 742 KQTYTSANKELLEVDTSNNEDMFVQMAEWVK--------FNIPETIIRALYQKGFKTPTK 793
++ +S + ++ E T + VQ + I + + L F PT
Sbjct: 68 RKKQSSGDSDVEETGTEKAGEDVVQGEGEEEEESKSFKELEIIDQLCETLEILKFHKPTP 127
Query: 794 IQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 853
IQ +P AL A KD++G AETGSGKT AF +PIL + +
Sbjct: 128 IQQASIPLAL-AGKDLIGLAETGSGKTAAFALPILQALYH-------------------- 166
Query: 854 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGG 913
S ++T L+A ILAPTRELA Q+ G VK +VGG
Sbjct: 167 ---------SPHST---------LFACILAPTRELAFQISEQTEAIGGSLGVKTCVIVGG 208
Query: 914 MSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPE 973
M Q L+K PHI+VATPGRL + ++ + L I YLV+DE DR+++ P
Sbjct: 209 MDMMPQAIALSKRPHIIVATPGRLLDHLE--NTKGFSLRSIKYLVMDEADRLLDLDFGPI 266
Query: 974 LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 1033
++ IL + R T++FSAT+T ++RLQ +
Sbjct: 267 IEKILKVL-----PPQRNTYLFSATMTDK-----------------------VERLQRM- 297
Query: 1034 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRTLV-FCNSISSVK 1091
++ +P V ++ K K+L + +L +KD+YL Y + + G+T++ F +I +
Sbjct: 298 SLTNPVRVAVSSKYQTVKSLLQYFMLIPQKDKDTYLVYLVAEKFAGKTMIIFTRTIMDTQ 357
Query: 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151
R++ LL +L CS +PLH ++Q RL L++F+ +IL+ATDVAARGLDIP +++VI+
Sbjct: 358 RISVLLRLLGCSAIPLHGQLSQTGRLGALNKFKAGARNILVATDVAARGLDIPTVDYVIN 417
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
Y + S+ YIHR GRTARA G+ + L+ +I + ++ +L KK+D
Sbjct: 418 YDIAGDSKTYIHRVGRTARAGRSGVCVNLVTQYDIEEFTRIEKALGKKLD 467
Score = 192 bits (487), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 167/598 (27%), Positives = 258/598 (43%), Gaps = 170/598 (28%)
Query: 72 SKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKK-------KK 124
+KK+K+ + QN ++ V + + +D + K + Q+ SS K K KK
Sbjct: 9 TKKRKISKPQNEDEL-VPSTTPSLSDLVASIKKNTQAQAQNASSGKSSSTKNESDGDVKK 67
Query: 125 KQTYTSANKELLEVDTSNNEDMFVQMAEWVK--------FNIPETIIRALYQKGFKTPTK 176
++ +S + ++ E T + VQ + I + + L F PT
Sbjct: 68 RKKQSSGDSDVEETGTEKAGEDVVQGEGEEEEESKSFKELEIIDQLCETLEILKFHKPTP 127
Query: 177 IQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236
IQ +P AL A KD++G AETGSGKT AF +PIL + +
Sbjct: 128 IQQASIPLAL-AGKDLIGLAETGSGKTAAFALPILQALYH-------------------- 166
Query: 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGG 296
S ++T L+A ILAPTRELA Q+ G VK +VGG
Sbjct: 167 ---------SPHST---------LFACILAPTRELAFQISEQTEAIGGSLGVKTCVIVGG 208
Query: 297 MSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPE 356
M Q L+K PHI+VATPGRL + ++ + L I YLV+DE DR+++ P
Sbjct: 209 MDMMPQAIALSKRPHIIVATPGRLLDHLE--NTKGFSLRSIKYLVMDEADRLLDLDFGPI 266
Query: 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416
++ IL + P Q R T++FSAT+T
Sbjct: 267 IEKILKVL-------PPQ--------------------------RNTYLFSATMTD---- 289
Query: 417 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 476
++RLQ +++ +P V ++ K K+L + +L +K
Sbjct: 290 -------------------KVERLQR-MSLTNPVRVAVSSKYQTVKSLLQYFMLIPQKDK 329
Query: 477 DSYLYYFILQ-HPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 535
D+YL Y + + G+T+ I T+T+ ++
Sbjct: 330 DTYLVYLVAEKFAGKTM---------------------IIFTRTIMDT------------ 356
Query: 536 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 595
+R++ LL +L CS +PLH ++Q RL L++F+
Sbjct: 357 ----------------------QRISVLLRLLGCSAIPLHGQLSQTGRLGALNKFKAGAR 394
Query: 596 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+IL+ATDVAARGLDIP +++VI+Y + S+ YIHR GRTARA G+ V L+ +I
Sbjct: 395 NILVATDVAARGLDIPTVDYVINYDIAGDSKTYIHRVGRTARAGRSGVCVNLVTQYDI 452
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
A ILAPTRELA Q+ G VK +VGGM Q L+K PHI+VATPG L
Sbjct: 174 ACILAPTRELAFQISEQTEAIGGSLGVKTCVIVGGMDMMPQAIALSKRPHIIVATPGRLL 233
Query: 1415 ----SLKRIDLAKSIEYL 1428
+ K L +SI+YL
Sbjct: 234 DHLENTKGFSL-RSIKYL 250
>gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895]
gi|442570013|sp|Q75EW9.2|RRP3_ASHGO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895]
gi|374105700|gb|AEY94611.1| FAAL041Cp [Ashbya gossypii FDAG1]
Length = 486
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 159/480 (33%), Positives = 244/480 (50%), Gaps = 75/480 (15%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+PE +I A F PT IQS +P AL KDI+G A+TGSGKT AF IPIL N+
Sbjct: 74 VPE-LIEACDNLNFTKPTPIQSKAIPPALQG-KDIIGLAQTGSGKTAAFAIPIL----NR 127
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
L + + YA ILAPTRELA Q++
Sbjct: 128 LWH-----------------------------------DQQPYYACILAPTRELAQQIKE 152
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ + L K+
Sbjct: 153 TFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGFALRKL 210
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
+LV+DE DR+++ P +LDR+ ++ R T++FSAT+T S
Sbjct: 211 QFLVMDEADRLLDMEFGP----VLDRILKNIPTKGRTTYLFSATMT-------------S 253
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K+ + ++ +P ++ K TL ++ I+ K+++L Y +
Sbjct: 254 KIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLN 302
Query: 1075 QHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+ G+T +VF + ++ +R++ L +L+ S LH +NQ QR LD F+ SIL+A
Sbjct: 303 EFIGKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVA 362
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L +++
Sbjct: 363 TDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELILRIE 422
Query: 1194 NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHRSGRTARANN 1252
L KK LP +D+S++ ++ +D A +E ++ K + R RTA N
Sbjct: 423 EVLGKK--LPKENVDKSIVLSLRDSVDKANGEVIMELNRRNKEKQTRGKGRRSRTATREN 480
Score = 183 bits (464), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 218/498 (43%), Gaps = 154/498 (30%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+PE +I A F PT IQS +P AL KDI+G A+TGSGKT AF IPIL N+
Sbjct: 74 VPE-LIEACDNLNFTKPTPIQSKAIPPALQG-KDIIGLAQTGSGKTAAFAIPIL----NR 127
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
L + + YA ILAPTRELA Q++
Sbjct: 128 LWH-----------------------------------DQQPYYACILAPTRELAQQIKE 152
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ + L K+
Sbjct: 153 TFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGFALRKL 210
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
+LV+DE DR+++ P +LDR+ LKNI
Sbjct: 211 QFLVMDEADRLLDMEFGP----VLDRI--------------------LKNI--------P 238
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
++ R T++FSAT+T SK K+ + ++ +P ++ K
Sbjct: 239 TKGRTTYLFSATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNK 274
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
TL ++ I+ K+++L Y + + G+T T
Sbjct: 275 YQTVDTLVQTLIVVPGGLKNTFLIYLLNEFIGKT-------------------------T 309
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
T +K + E+ S L CN +L+ S LH
Sbjct: 310 IVFTRTK---ANAERISGL--------------CN-------------LLEFSATALHGD 339
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+NQ QR LD F+ SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTAR
Sbjct: 340 LNQNQRTGALDLFKAGKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTAR 399
Query: 638 ANNEGLTVVLIESDEIPL 655
A G +V L+ ++ L
Sbjct: 400 AGRSGKSVSLVSQYDLEL 417
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 135 YYACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGR 194
Query: 1414 L 1414
L
Sbjct: 195 L 195
>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
Length = 507
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 154/464 (33%), Positives = 240/464 (51%), Gaps = 76/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + ET+ +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 57 WKDLGLNETLCQACEELKWKAPSKIQKEAIPVALQG-KDVIGLAETGSGKTGAFALPILQ 115
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LENP + +AL+L PTRELA
Sbjct: 116 AL---LENP------------------------------------QRYFALVLTPTRELA 136
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 137 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 196
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
I YLV+DE DR++ EL IL + + R+TF+FSAT+T
Sbjct: 197 K---AIKYLVMDEADRILNMDFEVELDKILKVL-----PRERRTFLFSATMT-------- 240
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K+LQ ++K P V+++ K + L +S + KD Y
Sbjct: 241 --------KKV-------KKLQRA-SLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVY 284
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC++ ++ + +L L + +PLH M+Q +RL L++F+ +N
Sbjct: 285 LVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKN 344
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + ++ +I
Sbjct: 345 RSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGRAITMVSQYDIE 404
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY ++ + L K+ LP + +E + +++R+ A+ LE K
Sbjct: 405 LYQRIEHLLGKQ--LPLYKCEEDEVMALQERVAEAQRTAKLELK 446
Score = 186 bits (472), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 145/504 (28%), Positives = 220/504 (43%), Gaps = 156/504 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + ET+ +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 57 WKDLGLNETLCQACEELKWKAPSKIQKEAIPVALQG-KDVIGLAETGSGKTGAFALPILQ 115
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LENP + +AL+L PTRELA
Sbjct: 116 AL---LENP------------------------------------QRYFALVLTPTRELA 136
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 137 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 196
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
I YLV+DE DR++ EL IL + PR+
Sbjct: 197 K---AIKYLVMDEADRILNMDFEVELDKILKVL-------PRE----------------- 229
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+TF+FSAT+T KKV K+LQ ++K P
Sbjct: 230 ---------RRTFLFSATMT----------------KKV-------KKLQR-ASLKDPVK 256
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K + L +S + KD YL + + + G
Sbjct: 257 VEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAG---------------------- 294
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+S++ + C++ ++ + +L L +
Sbjct: 295 ---------------------NSFMIF------------CSTCNNTVKTALMLRALGLAA 321
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR
Sbjct: 322 IPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHR 381
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTARA G + ++ +I L
Sbjct: 382 VGRTARAGRSGRAITMVSQYDIEL 405
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG
Sbjct: 124 YFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGR 183
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
L ++K +L K+I+YL + D L +MD ++ + +++ R
Sbjct: 184 LVDHLENMKGFNL-KAIKYLVM----DEADRIL-----NMDFEVELDKILKVLPRERRTF 233
Query: 1469 LMSKALVSKRKELQ 1482
L S + K K+LQ
Sbjct: 234 LFSATMTKKVKKLQ 247
>gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta]
gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta]
Length = 524
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 158/480 (32%), Positives = 248/480 (51%), Gaps = 81/480 (16%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
E DT++++ + W + ET+ +A + +K P+KIQ +P AL KD++G A
Sbjct: 60 EDDTADDQKL-----TWKDLGLNETLCQACDELKWKAPSKIQREAIPVALQG-KDVIGLA 113
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
ETGSGKT AF +PIL + LENP
Sbjct: 114 ETGSGKTGAFALPILHAL---LENP----------------------------------- 135
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ +AL+L PTRELA Q+ G +K VVGGM Q L K PHI++AT
Sbjct: 136 -QRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIAT 194
Query: 934 PGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT 992
PGRL + ++ + F+L I YLV+DE DR++ EL IL + + R+T
Sbjct: 195 PGRLVDHLENMKGFNLK---AIKYLVMDEADRILNMDFEVELDKILKVL-----PRERRT 246
Query: 993 FVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKT 1052
F+FSAT+T KKV K+LQ ++K P V+++ K +
Sbjct: 247 FLFSATMT----------------KKV-------KKLQRA-SLKDPVKVEVSNKYQTVEQ 282
Query: 1053 LTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
L +S + KD YL + + + G + ++FC++ ++ + +L L + +PLH M
Sbjct: 283 LQQSYLFIPVKYKDVYLVHILNELSGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQM 342
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA
Sbjct: 343 SQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARA 402
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
G + L+ +I LY ++ + L K+ LP + +E + +++R+ A+ LE K
Sbjct: 403 GRSGKAITLVSQYDIELYQRIEHLLGKQ--LPLYKCEEDEVMALQERVAEAQRTAKLELK 460
Score = 186 bits (473), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 149/520 (28%), Positives = 228/520 (43%), Gaps = 161/520 (30%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
E DT++++ + W + ET+ +A + +K P+KIQ +P AL KD++G A
Sbjct: 60 EDDTADDQKL-----TWKDLGLNETLCQACDELKWKAPSKIQREAIPVALQG-KDVIGLA 113
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
ETGSGKT AF +PIL + LENP
Sbjct: 114 ETGSGKTGAFALPILHAL---LENP----------------------------------- 135
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ +AL+L PTRELA Q+ G +K VVGGM Q L K PHI++AT
Sbjct: 136 -QRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIAT 194
Query: 317 PGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT 375
PGRL + ++ + F+L I YLV+DE DR++ EL IL + PR+
Sbjct: 195 PGRLVDHLENMKGFNLK---AIKYLVMDEADRILNMDFEVELDKILKVL-------PRE- 243
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP 435
R+TF+FSAT+T KKV
Sbjct: 244 -------------------------RRTFLFSATMT----------------KKV----- 257
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
K+LQ ++K P V+++ K + L +S + KD YL + + + G
Sbjct: 258 --KKLQR-ASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELSG------ 308
Query: 496 IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555
+S++ + C++ +
Sbjct: 309 -------------------------------------NSFMIF------------CSTCN 319
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615
+ + +L L + +PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++
Sbjct: 320 NTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDV 379
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
V+++ +P S+ YIHR GRTARA G + L+ +I L
Sbjct: 380 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIEL 419
Score = 60.1 bits (144), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG L
Sbjct: 140 ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 199
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
++K +L K+I+YL + D L +MD ++ + +++ R L
Sbjct: 200 DHLENMKGFNL-KAIKYL----VMDEADRIL-----NMDFEVELDKILKVLPRERRTFLF 249
Query: 1471 SKALVSKRKELQ 1482
S + K K+LQ
Sbjct: 250 SATMTKKVKKLQ 261
>gi|46116372|ref|XP_384204.1| hypothetical protein FG04028.1 [Gibberella zeae PH-1]
gi|91207782|sp|Q4IFI0.1|RRP3_GIBZE RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 486
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 230/448 (51%), Gaps = 79/448 (17%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
+K PT IQ +P AL R DI+G AETGSGKT AF +P+L +++K +
Sbjct: 80 YKYPTPIQEKSIPVALQGR-DIIGLAETGSGKTAAFALPVLQALLDKPQ----------- 127
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 907
L+ L+LAPTRELA Q+ G ++
Sbjct: 128 ----------------------------PLFGLVLAPTRELATQIGQAFEALGSLISLRC 159
Query: 908 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDR 964
A +VGG+ Q L K PHI+VATPGRL + H T+ L + YL++DE DR
Sbjct: 160 AVIVGGLDMVPQAIALGKKPHIVVATPGRLVD-----HLEKTKGFSLRTLKYLIMDEADR 214
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP 1024
+++ P + IL V + R+T++FSAT++ +++ ++ S DP
Sbjct: 215 LLDMDFGPSIDKILKFV-----PRERRTYLFSATISSKIESL----------QRASLRDP 259
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVF 1083
K+ + K TL ++ + H +KD +L Y I +H G+ T+VF
Sbjct: 260 V-------------KVSISSNKYQTVSTLLQNYLFIPHPQKDVHLIYLINEHAGQSTIVF 306
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
++ +R++ LL L +PLH ++Q RL L++FR IL+ATDVAARGLDI
Sbjct: 307 TRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILVATDVAARGLDI 366
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
P ++ V++Y +P+ S+ YIHR GRTARA G+ + L+ ++ +Y+++ +L KK L
Sbjct: 367 PSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKK--LA 424
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++P ++ + + R++ A+ I +E K
Sbjct: 425 EYPTEKEEVMAFQSRVEEAQRIARIEMK 452
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 137/481 (28%), Positives = 206/481 (42%), Gaps = 159/481 (33%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
+K PT IQ +P AL R DI+G AETGSGKT AF +P+L +++K +
Sbjct: 80 YKYPTPIQEKSIPVALQGR-DIIGLAETGSGKTAAFALPVLQALLDKPQ----------- 127
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 290
L+ L+LAPTRELA Q+ G ++
Sbjct: 128 ----------------------------PLFGLVLAPTRELATQIGQAFEALGSLISLRC 159
Query: 291 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDR 347
A +VGG+ Q L K PHI+VATPGRL + H T+ L + YL++DE DR
Sbjct: 160 AVIVGGLDMVPQAIALGKKPHIVVATPGRLVD-----HLEKTKGFSLRTLKYLIMDEADR 214
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
+++ P + IL V PR+ R+T++FS
Sbjct: 215 LLDMDFGPSIDKILKFV-------PRE--------------------------RRTYLFS 241
Query: 408 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467
AT++ +++ ++ S DP K+ + K TL ++
Sbjct: 242 ATISSKIES----------LQRASLRDPV-------------KVSISSNKYQTVSTLLQN 278
Query: 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC 527
+ H +KD +L Y I +H G++ I T+T+ E+
Sbjct: 279 YLFIPHPQKDVHLIYLINEHAGQS---------------------TIVFTRTVWET---- 313
Query: 528 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587
+R++ LL L +PLH ++Q RL L
Sbjct: 314 ------------------------------QRVSILLRTLGFGAIPLHGQLSQSSRLGAL 343
Query: 588 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
++FR IL+ATDVAARGLDIP ++ V++Y +P+ S+ YIHR GRTARA G+ + L
Sbjct: 344 NKFRSGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISL 403
Query: 648 I 648
+
Sbjct: 404 V 404
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G ++ A +VGG+ Q L K PHI+VATPG L
Sbjct: 131 GLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPHIVVATPGRL 189
Score = 44.3 bits (103), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
++HR GRTARA G+ + L+ ++ +Y+++ +L KK L ++P ++ + + R+
Sbjct: 383 TYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKK--LAEYPTEKEEVMAFQSRV 440
Query: 1299 DLAKSIEYLESK 1310
+ A+ I +E K
Sbjct: 441 EEAQRIARIEMK 452
>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
Length = 512
Score = 228 bits (580), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 156/475 (32%), Positives = 238/475 (50%), Gaps = 83/475 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + E + A Q G+K PTKIQ +P AL R D++G AETGSGKT AF +P+L
Sbjct: 81 FKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGR-DVIGLAETGSGKTGAFAVPVLQ 139
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ +L+ L+L PTRELA
Sbjct: 140 SLL---------------------------------------ACAQRLHTLVLTPTRELA 160
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G VK A +VGG+ Q +L K PH+++ATPGRL + ++ F+L
Sbjct: 161 FQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATPGRLIDHMENTKGFNL 220
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 221 RAL---KYLVMDEADRILNMDFESEVDKILKVI-----PRDRRTFLFSATMT-------- 264
Query: 1009 LKKGQSKSKKVSKGDPSIKR--LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
KKV K ++R LQD P ++ K L + I KD
Sbjct: 265 --------KKVQK----LQRAALQD------PVKCSVSSKYATVDKLQQFYIFIPSKYKD 306
Query: 1067 SYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
YL + + G + +VFC + ++ +R+ LL L + +PLH M+Q +RL L++F+
Sbjct: 307 CYLVSILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKS 366
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
++ S+LLATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + +
Sbjct: 367 KSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYD 426
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK---SIEYLESKIKKNRP 1237
+ L+ ++ + KK LP FP E + ++ +R+ A+ IE ES K+ RP
Sbjct: 427 VELFQRIEALIGKK--LPAFPTQEEEVMMLVERVSEAQRFARIEMKESSEKRKRP 479
Score = 114 bits (284), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 118/217 (54%), Gaps = 15/217 (6%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++Q L ++ P ++ K L + I KD YL + + G +
Sbjct: 262 TMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKYKDCYLVSILNELAGNSF 321
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
+VFC + ++ +R+ LL L + +PLH M+Q +RL L++F+ ++ S+LLATDVA+RG
Sbjct: 322 MVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRG 381
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK--------- 658
LDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++ L +
Sbjct: 382 LDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEALIGKKL 441
Query: 659 --FNLQEEENNEEEERAEADKEKTEDINVTVSSKKKK 693
F QEEE ER ++ ++ I + SS+K+K
Sbjct: 442 PAFPTQEEEVMMLVERV-SEAQRFARIEMKESSEKRK 477
Score = 107 bits (268), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 113/260 (43%), Gaps = 77/260 (29%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + E + A Q G+K PTKIQ +P AL R D++G AETGSGKT AF +P+L
Sbjct: 81 FKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGR-DVIGLAETGSGKTGAFAVPVLQ 139
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ +L+ L+L PTRELA
Sbjct: 140 SLL---------------------------------------ACAQRLHTLVLTPTRELA 160
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G VK A +VGG+ Q +L K PH+++ATPGRL + ++ F+L
Sbjct: 161 FQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATPGRLIDHMENTKGFNL 220
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L YLV+DE DR++ E+ IL + PR
Sbjct: 221 RAL---KYLVMDEADRILNMDFESEVDKILKVI-------PRD----------------- 253
Query: 392 VTMTETSQPRQTFVFSATLT 411
R+TF+FSAT+T
Sbjct: 254 ---------RRTFLFSATMT 264
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA Q+ G VK A +VGG+ Q +L K PH+++ATPG L
Sbjct: 151 LVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATPGRL 208
Score = 46.6 bits (109), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L+ ++ + KK LP FP E + ++ +R+
Sbjct: 401 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEALIGKK--LPAFPTQEEEVMMLVERV 458
Query: 1299 DLAK---SIEYLESKIKKNRPDNWLEKAAKDMD 1328
A+ IE ES K+ RP AA+++D
Sbjct: 459 SEAQRFARIEMKESSEKRKRPS-----AAQEVD 486
>gi|367001072|ref|XP_003685271.1| hypothetical protein TPHA_0D01990 [Tetrapisispora phaffii CBS 4417]
gi|357523569|emb|CCE62837.1| hypothetical protein TPHA_0D01990 [Tetrapisispora phaffii CBS 4417]
Length = 498
Score = 228 bits (580), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 165/507 (32%), Positives = 259/507 (51%), Gaps = 89/507 (17%)
Query: 731 HSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAE----------WVKFN----IP 776
+K L+ +KK K+T T++ E E +T N + ++ + FN +P
Sbjct: 26 RAKALENQKKLKETGTTSMNESDE-ETGNTKRQVIRTEADIEENTSEKTFTSFNELDLVP 84
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E +I+A + F PT IQS +P AL DI+G A+TGSGKT AF IPIL NKL
Sbjct: 85 E-LIQACHNLNFSKPTPIQSKSIPPALEGH-DIIGLAQTGSGKTAAFAIPIL----NKLW 138
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
ED+ YA ILAPTRELA Q++
Sbjct: 139 ----EDQQ-------------------------------PYYACILAPTRELAQQIKETF 163
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ + L K+ +
Sbjct: 164 DSLGSLMGVRSVCIVGGMNMMDQSRELMRKPHIIIATPGRLMDHLE--NTKGFSLRKLKF 221
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
LV+DE DR+++ P +LDR+ +Q R T++FSAT+T SK
Sbjct: 222 LVMDEADRLLDMEFGP----VLDRILKIIPTQDRTTYLFSATMT-------------SKI 264
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
+K+ + ++ +P ++ K +TL ++ ++ K++YL Y + +
Sbjct: 265 EKLQRA-----------SLTNPVKCAVSNKYQTVETLVQTLMVVPGGLKNTYLIYLLNEF 313
Query: 1077 PGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
G+++ VF + ++ +RL+ L +L+ S LH +NQ QR LD F+ IL+A D
Sbjct: 314 IGKSIIVFTRTKANAERLSALSNLLEFSSTALHGDLNQNQRTGALDLFKAGKRQILVAID 373
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195
VAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L +++ +
Sbjct: 374 VAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDV 433
Query: 1196 LEKKVDLPDFPIDESVLSLIKKRIDLA 1222
L KK LP +D++ + + + +D A
Sbjct: 434 LGKK--LPKENVDKNTIMMFRDSVDKA 458
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 110/392 (28%), Positives = 173/392 (44%), Gaps = 114/392 (29%)
Query: 115 SKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAE----------WVKFN----IPE 160
+K L+ +KK K+T T++ E E +T N + ++ + FN +PE
Sbjct: 27 AKALENQKKLKETGTTSMNESDE-ETGNTKRQVIRTEADIEENTSEKTFTSFNELDLVPE 85
Query: 161 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 220
+I+A + F PT IQS +P AL DI+G A+TGSGKT AF IPIL NKL
Sbjct: 86 -LIQACHNLNFSKPTPIQSKSIPPALEGH-DIIGLAQTGSGKTAAFAIPIL----NKLW- 138
Query: 221 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 280
ED+ YA ILAPTRELA Q++
Sbjct: 139 ---EDQQ-------------------------------PYYACILAPTRELAQQIKETFD 164
Query: 281 DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYL 340
G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ + L K+ +L
Sbjct: 165 SLGSLMGVRSVCIVGGMNMMDQSRELMRKPHIIIATPGRLMDHLE--NTKGFSLRKLKFL 222
Query: 341 VIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQP 400
V+DE DR+++ P +LDR+ +Q
Sbjct: 223 VMDEADRLLDMEFGP--------------------------------VLDRILKIIPTQD 250
Query: 401 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460
R T++FSAT+T SK +K+ + ++ +P ++ K
Sbjct: 251 RTTYLFSATMT-------------SKIEKLQRA-----------SLTNPVKCAVSNKYQT 286
Query: 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
+TL ++ ++ K++YL Y + + G+++
Sbjct: 287 VETLVQTLMVVPGGLKNTYLIYLLNEFIGKSI 318
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 126/223 (56%), Gaps = 14/223 (6%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
S+++L+ L+ ++ +++D+ + + L KI+ D + +YL+ T+ +
Sbjct: 215 SLRKLKFLVMDEADRLLDMEFGPVLDRIL---KIIPTQD-RTTYLF-------SATMTSK 263
Query: 496 IQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCN 552
I+ L ++ +P ++ K +TL ++ ++ K++YL Y + + G+++ VF
Sbjct: 264 IEKLQRASLTNPVKCAVSNKYQTVETLVQTLMVVPGGLKNTYLIYLLNEFIGKSIIVFTR 323
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
+ ++ +RL+ L +L+ S LH +NQ QR LD F+ IL+A DVAARGLDIP
Sbjct: 324 TKANAERLSALSNLLEFSSTALHGDLNQNQRTGALDLFKAGKRQILVAIDVAARGLDIPS 383
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 384 VDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 426
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 144 YYACILAPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDQSRELMRKPHIIIATPGR 203
Query: 1414 L 1414
L
Sbjct: 204 L 204
>gi|346978651|gb|EGY22103.1| ATP-dependent rRNA helicase rrp-3 [Verticillium dahliae VdLs.17]
Length = 486
Score = 228 bits (580), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 151/472 (31%), Positives = 241/472 (51%), Gaps = 80/472 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E+++ A G+K PT IQ +P AL R D++G AETGSGKT AF +P+L
Sbjct: 63 FADLGVVESLVEATEALGYKHPTPIQEKSIPLALEGR-DVIGLAETGSGKTAAFALPVLQ 121
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LE P+ L+A+++APTRELA
Sbjct: 122 AL---LEKPS------------------------------------GLFAVVMAPTRELA 142
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ G ++ A +VGG+ +Q L K PH++VATPGRL L H T
Sbjct: 143 AQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKPHVVVATPGRL-----LDHLEKT 197
Query: 950 E---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
+ L + YLV+DE DR+++ P + IL + + R T++FSAT++ +++
Sbjct: 198 KGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFI-----PRERHTYLFSATMSSKVES- 251
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
++ S DP+ +Q + + TL ++ + H KD
Sbjct: 252 ---------LQRASLKDPARVSVQ-------------SNGYQVVSTLLQNYLFIPHALKD 289
Query: 1067 SYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
Y + I G+ T+VF ++ +RL LL L S LPLH ++Q RL L++FR
Sbjct: 290 VYCVHLINSFIGQTTIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRA 349
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+ IL+ATDVAARGLDIP ++ VI+Y +P+ S+ YIHR GRTARA G L L+ +
Sbjct: 350 GSRDILVATDVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYD 409
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNR 1236
+ +++++ S+ KK+D +FP ++ + + + R++ A+ +E K + +NR
Sbjct: 410 LEIWLRIEASMGKKLD--EFPTEKDEVMVFQARVEEAQRHARIEMKHLMENR 459
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 153/562 (27%), Positives = 237/562 (42%), Gaps = 169/562 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E+++ A G+K PT IQ +P AL R D++G AETGSGKT AF +P+L
Sbjct: 63 FADLGVVESLVEATEALGYKHPTPIQEKSIPLALEGR-DVIGLAETGSGKTAAFALPVLQ 121
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LE P+ L+A+++APTRELA
Sbjct: 122 AL---LEKPS------------------------------------GLFAVVMAPTRELA 142
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ G ++ A +VGG+ +Q L K PH++VATPGRL L H T
Sbjct: 143 AQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKPHVVVATPGRL-----LDHLEKT 197
Query: 333 E---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+ L + YLV+DE DR+++ P + IL + PR+
Sbjct: 198 KGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFI-------PRE--------------- 235
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
R T++FSAT++ +++ ++ S DP+ +Q
Sbjct: 236 -----------RHTYLFSATMSSKVES----------LQRASLKDPARVSVQ-------- 266
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
+ + TL ++ + H KD Y + I G+T I + V
Sbjct: 267 -----SNGYQVVSTLLQNYLFIPHALKDVYCVHLINSFIGQT---------TIVFLRTVH 312
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
T+++ I RTL F
Sbjct: 313 DTQRLAILL---------------------------RTLGF------------------- 326
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
S LPLH ++Q RL L++FR + IL+ATDVAARGLDIP ++ VI+Y +P+ S+ YI
Sbjct: 327 SALPLHGQLSQSARLGALNKFRAGSRDILVATDVAARGLDIPNVDVVINYDLPQDSKTYI 386
Query: 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSS 689
HR GRTARA G + L+ T+++L+ E + D+ TE V V
Sbjct: 387 HRVGRTARAGKSGRALSLV--------TQYDLEIWLRIEASMGKKLDEFPTEKDEVMVF- 437
Query: 690 KKKKLKRKQNPSQVEVSELSAN 711
+ +++ Q +++E+ L N
Sbjct: 438 -QARVEEAQRHARIEMKHLMEN 458
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A+++APTRELA Q+ G ++ A +VGG+ +Q L K PH++VATPG L
Sbjct: 132 AVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKPHVVVATPGRL- 190
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKAL 1474
L ++ K K + + D L DMD + +++ R L S +
Sbjct: 191 LDHLEKTKGFSLRSLKYLVLDEADRLL-----DMDFGPSIDKILKFIPRERHTYLFSATM 245
Query: 1475 VSKRKELQ 1482
SK + LQ
Sbjct: 246 SSKVESLQ 253
Score = 43.1 bits (100), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
++HR GRTARA G L L+ ++ +++++ S+ KK+D +FP ++ + + + R+
Sbjct: 384 TYIHRVGRTARAGKSGRALSLVTQYDLEIWLRIEASMGKKLD--EFPTEKDEVMVFQARV 441
Query: 1299 DLAKSIEYLESK-IKKNR 1315
+ A+ +E K + +NR
Sbjct: 442 EEAQRHARIEMKHLMENR 459
>gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660562|sp|Q6CT85.1|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis]
Length = 487
Score = 228 bits (580), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 158/480 (32%), Positives = 243/480 (50%), Gaps = 75/480 (15%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+PE +I A + PT IQS +P AL DI+G A+TGSGKT AF IPIL N+
Sbjct: 75 VPE-LIEACKNLNYNKPTPIQSKAIPPALKG-SDIIGLAQTGSGKTAAFAIPIL----NQ 128
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
L + + YA ILAPTRELA Q++
Sbjct: 129 LWHDQQP-----------------------------------YYACILAPTRELAQQIKE 153
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
G V+ C+VGGMS Q R L + PHI++ATPGRL + ++ + L K+
Sbjct: 154 TFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGFNLRKL 211
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
YLV+DE DR+++ P +LDR+ +Q R T++FSAT+T S
Sbjct: 212 KYLVMDEADRLLDMEFGP----VLDRILNIIPTQGRTTYLFSATMT-------------S 254
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K+ + ++ +P ++ K TL ++ ++ K+++L Y +
Sbjct: 255 KIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLN 303
Query: 1075 QHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+ G+ T+VF + ++ +R++ L +L+ S LH +NQ QR LD F+ SIL+A
Sbjct: 304 EFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVA 363
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L +++
Sbjct: 364 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
Query: 1194 NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHRSGRTARANN 1252
+ L KK LP +D+ + ++ +D A +E ++ K + R GR A +N
Sbjct: 424 DVLGKK--LPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRGRMATRDN 481
Score = 178 bits (451), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 213/498 (42%), Gaps = 154/498 (30%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+PE +I A + PT IQS +P AL DI+G A+TGSGKT AF IPIL N+
Sbjct: 75 VPE-LIEACKNLNYNKPTPIQSKAIPPALKG-SDIIGLAQTGSGKTAAFAIPIL----NQ 128
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
L + + YA ILAPTRELA Q++
Sbjct: 129 LWHDQQP-----------------------------------YYACILAPTRELAQQIKE 153
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
G V+ C+VGGMS Q R L + PHI++ATPGRL + ++ + L K+
Sbjct: 154 TFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGFNLRKL 211
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
YLV+DE DR+++ P +LDR+
Sbjct: 212 KYLVMDEADRLLDMEFGP--------------------------------VLDRILNIIP 239
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
+Q R T++FSAT+T SK K+ + ++ +P ++ K
Sbjct: 240 TQGRTTYLFSATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNK 275
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
TL ++ ++ K+++L Y + + G++ T
Sbjct: 276 YQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS-------------------------T 310
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
T +K + E+ S L CN +L+ S LH
Sbjct: 311 IVFTRTK---ANAERISNL--------------CN-------------LLEFSATALHGD 340
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+NQ QR LD F+ SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTAR
Sbjct: 341 LNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTAR 400
Query: 638 ANNEGLTVVLIESDEIPL 655
A G ++ L+ ++ L
Sbjct: 401 AGRSGKSISLVSQYDLEL 418
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGMS Q R L + PHI++ATPG
Sbjct: 136 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGR 195
Query: 1414 L 1414
L
Sbjct: 196 L 196
>gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
70294]
gi|160358661|sp|A7TS37.1|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 506
Score = 227 bits (578), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 158/476 (33%), Positives = 243/476 (51%), Gaps = 75/476 (15%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+PE +I A F PT IQ+ +P AL DI+G A+TGSGKT AF IPIL N+
Sbjct: 94 VPE-LIEACKNLNFAKPTPIQARSIPPALQGH-DIIGLAQTGSGKTAAFAIPIL----NR 147
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
L + + YA ILAPTRELA Q++
Sbjct: 148 LWHDQQP-----------------------------------YYACILAPTRELAQQIKE 172
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
G V+ AC+VGGM+ Q R L + PHI++ATPGRL + ++ + L K+
Sbjct: 173 TFDSLGSLMGVRSACIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTRGFSLRKL 230
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
+LV+DE DR+++ P +LDR+ +Q R T++FSAT+T S
Sbjct: 231 KFLVMDEADRLLDMEFGP----VLDRILKIIPTQGRTTYLFSATMT-------------S 273
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K+ + ++ +P ++ K TL ++ I+ K++YL Y +
Sbjct: 274 KIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTYLIYLMN 322
Query: 1075 QHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+ G+T+ VF + ++ +R+T L +L+ S LH +NQ QR +LD F+ SIL+A
Sbjct: 323 EFIGKTIIVFTRTKANAERITTLANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSILVA 382
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L +++
Sbjct: 383 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 442
Query: 1194 NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHRSGRTA 1248
+ L KK LP +++ + ++ +D A +E ++ K + R GR A
Sbjct: 443 DVLGKK--LPKENVNKDAILTLRDSVDKANGEVVMELNRRNKEKIARGKGRRGRMA 496
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 145/335 (43%), Gaps = 99/335 (29%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+PE +I A F PT IQ+ +P AL DI+G A+TGSGKT AF IPIL N+
Sbjct: 94 VPE-LIEACKNLNFAKPTPIQARSIPPALQGH-DIIGLAQTGSGKTAAFAIPIL----NR 147
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
L + + YA ILAPTRELA Q++
Sbjct: 148 LWHDQQP-----------------------------------YYACILAPTRELAQQIKE 172
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
G V+ AC+VGGM+ Q R L + PHI++ATPGRL + ++ + L K+
Sbjct: 173 TFDSLGSLMGVRSACIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTRGFSLRKL 230
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
+LV+DE DR+++ P +LDR+
Sbjct: 231 KFLVMDEADRLLDMEFGP--------------------------------VLDRILKIIP 258
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
+Q R T++FSAT+T SK K+ + ++ +P ++ K
Sbjct: 259 TQGRTTYLFSATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNK 294
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
TL ++ I+ K++YL Y + + G+T+
Sbjct: 295 YQTVDTLVQTLIVVPGGLKNTYLIYLMNEFIGKTI 329
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 95/156 (60%), Gaps = 1/156 (0%)
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKR 559
++ +P ++ K TL ++ I+ K++YL Y + + G+T+ VF + ++ +R
Sbjct: 282 SLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTYLIYLMNEFIGKTIIVFTRTKANAER 341
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
+T L +L+ S LH +NQ QR +LD F+ SIL+ATDVAARGLDIP ++ VI+Y
Sbjct: 342 ITTLANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSILVATDVAARGLDIPSVDIVINY 401
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 402 DIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 437
Score = 63.5 bits (153), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 39/61 (63%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ AC+VGGM+ Q R L + PHI++ATPG
Sbjct: 155 YYACILAPTRELAQQIKETFDSLGSLMGVRSACIVGGMNMMDQARDLMRKPHIIIATPGR 214
Query: 1414 L 1414
L
Sbjct: 215 L 215
>gi|320038649|gb|EFW20584.1| ATP-dependent rRNA helicase RRP3 [Coccidioides posadasii str.
Silveira]
Length = 474
Score = 227 bits (578), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 147/465 (31%), Positives = 231/465 (49%), Gaps = 96/465 (20%)
Query: 746 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
T N E +E T+ + + I +++ A G+K PT+IQ+ +P AL
Sbjct: 35 TPGNDEKIEATTTKS---------FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQG 85
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
R D++G AETGSGKT AF +PIL +++K ++
Sbjct: 86 R-DLIGLAETGSGKTAAFALPILQALMDKPQS---------------------------- 116
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
++ L+LAPTRELA Q+ G V+ A +VGGM Q L K
Sbjct: 117 -----------MFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGK 165
Query: 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
PHI+VATPGRL + ++ + L + YLV+DE DR+++ P ILD++ +
Sbjct: 166 KPHIIVATPGRLLDHLE--NTKGFSLRSLKYLVMDEADRLLDLDFGP----ILDKI-LKV 218
Query: 986 TSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037
+ R+T++FSAT++ SL N L + +K + VS
Sbjct: 219 LPKERRTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVS----------------- 261
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQL 1096
TL ++ ++ H KD YL Y + + PG++ +VF +++ +RL L
Sbjct: 262 --------------TLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIVFTRTVNETQRLANL 307
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L L +PLH ++Q RL L +FR ++ +IL+ATDVAARGLDIP ++ V++Y +P
Sbjct: 308 LRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPS 367
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
S+ YIHR GRTARA G L+ ++ ++ ++ +L K++D
Sbjct: 368 DSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELD 412
Score = 190 bits (483), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 161/591 (27%), Positives = 246/591 (41%), Gaps = 188/591 (31%)
Query: 129 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
T N E +E T+ + + I +++ A G+K PT+IQ+ +P AL
Sbjct: 35 TPGNDEKIEATTTKS---------FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQG 85
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
R D++G AETGSGKT AF +PIL +++K ++
Sbjct: 86 R-DLIGLAETGSGKTAAFALPILQALMDKPQS---------------------------- 116
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
++ L+LAPTRELA Q+ G V+ A +VGGM Q L K
Sbjct: 117 -----------MFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGK 165
Query: 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
PHI+VATPGRL + ++ + L + YLV+DE DR+++ P L IL +
Sbjct: 166 KPHIIVATPGRLLDHLE--NTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVL---- 219
Query: 369 TSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLKNSLNL 420
P++ R+T++FSAT++ SL N L +
Sbjct: 220 ---PKE--------------------------RRTYLFSATMSSKVESLQRASLSNPLRV 250
Query: 421 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480
+K + VS TL ++ ++ H KD YL
Sbjct: 251 SVSSNKYQTVS-------------------------------TLLQNCLIIPHKHKDIYL 279
Query: 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540
Y + + PG+++ I T+T+ E+
Sbjct: 280 IYLLNEFPGQSV---------------------IVFTRTVNET----------------- 301
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+RL LL L +PLH ++Q RL L +FR ++ +IL+A
Sbjct: 302 -----------------QRLANLLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVA 344
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660
TDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA G L+ T+++
Sbjct: 345 TDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLV--------TQYD 396
Query: 661 LQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSAN 711
++ + E E D+ K E V V S ++ Q + E+ EL N
Sbjct: 397 VEIWQRIEAALGKELDEYKVEKEEVMVLS--DRVGEAQRHAITEMKELHEN 445
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 116 SMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPG 175
Query: 1413 AL-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSREN 1467
L + K L +S++YL + D L+ D I+D + PK R
Sbjct: 176 RLLDHLENTKGFSL-RSLKYL----VMDEADRLLD---LDFGPILDKILKVLPK--ERRT 225
Query: 1468 ALMSKALVSKRKELQ 1482
L S + SK + LQ
Sbjct: 226 YLFSATMSSKVESLQ 240
>gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC 6260]
Length = 475
Score = 227 bits (578), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 166/517 (32%), Positives = 262/517 (50%), Gaps = 85/517 (16%)
Query: 733 KKLKQKKKKKQTYTSANKELLEVDTSNNEDMFV--QMAEWVKFNIPETIIRALYQKGFKT 790
KK K+KK+ T +E++E + ++D+ Q +++ N+ ++ A+ + +
Sbjct: 27 KKNALKQKKQAPVTEKPEEIVETTSEASQDVNSEQQFHTFLELNLVPELMEAIEKLKYTK 86
Query: 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 850
PT IQS +P AL KDI+G A+TGSGKT AF IPIL +
Sbjct: 87 PTPIQSGAIPHALEG-KDIIGLAQTGSGKTAAFAIPILQSLW------------------ 127
Query: 851 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV 910
+ + YAL+LAPTRELA Q++ G V+ C+
Sbjct: 128 ---------------------EAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCI 166
Query: 911 VGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESG 969
VGGM Q R L + PHILVATPGR+ + ++ F L L YLV+DE DR+++
Sbjct: 167 VGGMDMMDQARDLMRKPHILVATPGRIMDHLENTKGFSLKSL---QYLVMDEADRLLDMD 223
Query: 970 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 1029
P L IL +V T+ R T++FSAT+T+ I +L
Sbjct: 224 FGPALDKIL-KVIPTK----RTTYLFSATMTNK-----------------------IAKL 255
Query: 1030 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSIS 1088
Q ++ P V ++ K L +S +L K+++L + + + G+++ VF + +
Sbjct: 256 QRA-SLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMGKSIIVFTRTCA 314
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
+R T L +L S +PLH + Q QRL +L++F+ +IL+ATDVAARGLDIP ++
Sbjct: 315 HTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVAARGLDIPSVDV 374
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL-PDFPI 1207
VI+Y +P S+ YIHR GRTARA G ++ L+ ++ +Y+++ + L K+ P P
Sbjct: 375 VINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESVLGFKLPKDPSPPR 434
Query: 1208 DESVLSLIKKRIDLA------KSIEYLESKIKKNRPD 1238
D VL+ + +D A ++ ++ E + KK R D
Sbjct: 435 D--VLNALHVHVDRASAEAIKQTKDFHEKRTKKKRDD 469
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 154/536 (28%), Positives = 233/536 (43%), Gaps = 158/536 (29%)
Query: 116 KKLKQKKKKKQTYTSANKELLEVDTSNNEDMFV--QMAEWVKFNIPETIIRALYQKGFKT 173
KK K+KK+ T +E++E + ++D+ Q +++ N+ ++ A+ + +
Sbjct: 27 KKNALKQKKQAPVTEKPEEIVETTSEASQDVNSEQQFHTFLELNLVPELMEAIEKLKYTK 86
Query: 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 233
PT IQS +P AL KDI+G A+TGSGKT AF IPIL +
Sbjct: 87 PTPIQSGAIPHALEG-KDIIGLAQTGSGKTAAFAIPILQSLW------------------ 127
Query: 234 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV 293
+ + YAL+LAPTRELA Q++ G V+ C+
Sbjct: 128 ---------------------EAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCI 166
Query: 294 VGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESG 352
VGGM Q R L + PHILVATPGR+ + ++ F L L YLV+DE DR+++
Sbjct: 167 VGGMDMMDQARDLMRKPHILVATPGRIMDHLENTKGFSLKSL---QYLVMDEADRLLDMD 223
Query: 353 HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412
P L IL +V T+ R T++FSAT+T+
Sbjct: 224 FGPALDKIL-KVIPTK--------------------------------RTTYLFSATMTN 250
Query: 413 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472
I +LQ ++ P V ++ K L +S +L
Sbjct: 251 -----------------------KIAKLQR-ASLHEPVKVAVSNKYQTADNLVQSMMLVS 286
Query: 473 HDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 532
K+++L + + + G+++ I T+T C H
Sbjct: 287 DGYKNTFLIHLLNEFMGKSI---------------------IVFTRT-------CAH--- 315
Query: 533 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592
+R T L +L S +PLH + Q QRL +L++F+
Sbjct: 316 ------------------------TQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKS 351
Query: 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+
Sbjct: 352 GKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLV 407
Score = 63.5 bits (153), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+LAPTRELA Q++ G V+ C+VGGM Q R L + PHILVATPG
Sbjct: 133 YYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPHILVATPGR 192
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
+ + K L KS++YL + D L DMD + +++ R
Sbjct: 193 IMDHLENTKGFSL-KSLQYLV----MDEADRLL-----DMDFGPALDKILKVIPTKRTTY 242
Query: 1469 LMSKALVSKRKELQ 1482
L S + +K +LQ
Sbjct: 243 LFSATMTNKIAKLQ 256
>gi|354548378|emb|CCE45114.1| hypothetical protein CPAR2_701180 [Candida parapsilosis]
Length = 478
Score = 227 bits (578), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 150/480 (31%), Positives = 243/480 (50%), Gaps = 73/480 (15%)
Query: 746 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
T+++ +T+ + D ++ + + N+ ++ A+ Q F PT IQS +P AL
Sbjct: 46 TASSSVAATTETTIDPDAELKFNTFAELNLVPDLLEAIQQMKFTKPTPIQSEAIPHALEG 105
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
KDI+G A TGSGKT AF IPIL + +
Sbjct: 106 -KDIIGLAVTGSGKTAAFAIPILQALWH-------------------------------- 132
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
+ + L+LAPTRELA Q+++ G ++ C+VGGM Q R L +
Sbjct: 133 -------AQTPYFGLVLAPTRELAFQIKDTFDALGTTMGLRSVCIVGGMDMMDQARDLMR 185
Query: 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
PHI+VATPGR+ + ++ H L + YLV+DE DR+++ P L IL +
Sbjct: 186 KPHIVVATPGRIMDHLE--HTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVI---- 239
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 1045
R T++FSAT+T+ I++LQ ++ +P V ++
Sbjct: 240 -PPKRTTYLFSATMTNK-----------------------IEKLQRA-SLHNPVRVAVST 274
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSP 1104
K L +S +L K++ L + + + G+++ VF +++ +R L +L +
Sbjct: 275 KYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARILGFNA 334
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
+PLH ++Q QRL +L++F+ +IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR
Sbjct: 335 VPLHGQLSQAQRLGSLNKFKSGKANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHR 394
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
GRTARA G ++ LI ++ +Y+++ N+L KK+ D P E VL + +D A +
Sbjct: 395 VGRTARAGRSGKSISLITQYDLEMYLRIENALGKKLPKEDKPSKE-VLDALHIHVDKATA 453
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 143/520 (27%), Positives = 227/520 (43%), Gaps = 154/520 (29%)
Query: 129 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
T+++ +T+ + D ++ + + N+ ++ A+ Q F PT IQS +P AL
Sbjct: 46 TASSSVAATTETTIDPDAELKFNTFAELNLVPDLLEAIQQMKFTKPTPIQSEAIPHALEG 105
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
KDI+G A TGSGKT AF IPIL + +
Sbjct: 106 -KDIIGLAVTGSGKTAAFAIPILQALWH-------------------------------- 132
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
+ + L+LAPTRELA Q+++ G ++ C+VGGM Q R L +
Sbjct: 133 -------AQTPYFGLVLAPTRELAFQIKDTFDALGTTMGLRSVCIVGGMDMMDQARDLMR 185
Query: 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
PHI+VATPGR+ + ++ H L + YLV+DE DR+++ P L IL +
Sbjct: 186 KPHIVVATPGRIMDHLE--HTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIP--- 240
Query: 369 TSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSK 428
P++T T++FSAT+T+
Sbjct: 241 ---PKRT---------------------------TYLFSATMTN---------------- 254
Query: 429 KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 488
I++LQ ++ +P V ++ K L +S +L K++ L + + +
Sbjct: 255 -------KIEKLQR-ASLHNPVRVAVSTKYQTADNLVQSMMLVNDGYKNTILIHLLNEFM 306
Query: 489 GRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
G+++ I T+T+ H ++ + L R L
Sbjct: 307 GKSI---------------------IVFTRTVA-------HAQRTALL--------ARIL 330
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608
F N++ PL H ++Q QRL +L++F+ +IL+ATDVAARGL
Sbjct: 331 GF-NAV----------------PL--HGQLSQAQRLGSLNKFKSGKANILVATDVAARGL 371
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
DIP ++ VI+Y +P S+ YIHR GRTARA G ++ LI
Sbjct: 372 DIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLI 411
Score = 60.5 bits (145), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+ L+LAPTRELA Q+++ G ++ C+VGGM Q R L + PHI+VATPG
Sbjct: 137 YFGLVLAPTRELAFQIKDTFDALGTTMGLRSVCIVGGMDMMDQARDLMRKPHIVVATPG 195
Score = 41.6 bits (96), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA G ++ LI ++ +Y+++ N+L KK+ D P E VL + +D
Sbjct: 391 YIHRVGRTARAGRSGKSISLITQYDLEMYLRIENALGKKLPKEDKPSKE-VLDALHIHVD 449
Query: 1300 LAKS 1303
A +
Sbjct: 450 KATA 453
>gi|449279156|gb|EMC86802.1| putative ATP-dependent RNA helicase DDX47, partial [Columba livia]
Length = 453
Score = 227 bits (578), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 235/459 (51%), Gaps = 76/459 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 LGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGR-DIIGLAETGSGKTGAFALPILQAL- 88
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 89 --LETP------------------------------------QRLFALVLTPTRELAFQI 110
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V +VGG+ Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 111 SEQFEALGSSIGVHTTVIVGGIDAMSQSLALAKKPHVIIATPGRLVDHLENTKGFNLRAL 170
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 171 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 211
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KDSYL +
Sbjct: 212 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVH 258
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL L++F+ + SI
Sbjct: 259 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGALNKFKAKARSI 318
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++ L+
Sbjct: 319 LLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQ 378
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++ + + KK LP FP+ E + ++ +R+ A+ + +E
Sbjct: 379 RIEHLIGKK--LPAFPMQEEEVMMLTERVAEAQRLARME 415
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 154/535 (28%), Positives = 226/535 (42%), Gaps = 168/535 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 LGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGR-DIIGLAETGSGKTGAFALPILQAL- 88
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 89 --LETP------------------------------------QRLFALVLTPTRELAFQI 110
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V +VGG+ Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 111 SEQFEALGSSIGVHTTVIVGGIDAMSQSLALAKKPHVIIATPGRLVDHLENTKGFNLRAL 170
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 171 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 200
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 201 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 230
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KDSYL + + + G
Sbjct: 231 SSKYQTVEKLQQYYIFIPSKFKDSYLVHILNELAG------------------------- 265
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 266 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 295
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL L++F+ + SILLATDVA+RGLDIP ++ VI++ +P S+ YIHR GR
Sbjct: 296 HGQMSQNKRLGALNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGR 355
Query: 635 TARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEADK 677
TARA G ++ + ++ L + F +QEEE ER AEA +
Sbjct: 356 TARAGRSGKSITFVTQYDVELFQRIEHLIGKKLPAFPMQEEEVMMLTERVAEAQR 410
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G V +VGG+ Q L K PH+++ATPG L
Sbjct: 97 ALVLTPTRELAFQISEQFEALGSSIGVHTTVIVGGIDAMSQSLALAKKPHVIIATPGRL 155
Score = 43.9 bits (102), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L+ ++ + + KK LP FP+ E + ++ +R+
Sbjct: 348 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKK--LPAFPMQEEEVMMLTERV 405
Query: 1299 DLAKSIEYLE 1308
A+ + +E
Sbjct: 406 AEAQRLARME 415
>gi|340719056|ref|XP_003397973.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
terrestris]
Length = 458
Score = 226 bits (577), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 239/464 (51%), Gaps = 76/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W I +T+ + +K+PTKIQ +P L KDI+G AETGSGKT AF IPIL
Sbjct: 25 WKDLGIVDTLCKTCEDLKWKSPTKIQCEAIPLTLEG-KDIIGLAETGSGKTAAFAIPILQ 83
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LENP + +ALIL PTRELA
Sbjct: 84 AL---LENP------------------------------------QRYFALILTPTRELA 104
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G VK A +VGGM Q +L K PHIL+ATPGRL + ++ F+L
Sbjct: 105 FQISEQFEALGSSIGVKCAVIVGGMDMMSQALLLAKKPHILIATPGRLVDHLENTKGFNL 164
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L +LV+DE DR++ E+ IL RV E R+T +FSAT+T
Sbjct: 165 RSL---KFLVMDEADRILNMDFEVEVDKIL-RVIPRE----RRTLLFSATMT-------- 208
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K ++R ++++P V+++ K + L + + KD Y
Sbjct: 209 --------KKVQK----LQRA----SLRNPVKVEVSTKYQTVEKLQQYYVFIPVKFKDVY 252
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC + ++ R LL L + +PLH M+Q +R+ L +F+ +N
Sbjct: 253 LVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKN 312
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++
Sbjct: 313 RSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVE 372
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY ++ + K+ LP +P +E + ++++R+ A+ I +E K
Sbjct: 373 LYQRIEQLISKQ--LPLYPTEEEEVMVLQERVAEAQRIVKMEMK 414
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 165/571 (28%), Positives = 245/571 (42%), Gaps = 169/571 (29%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W I +T+ + +K+PTKIQ +P L KDI+G AETGSGKT AF IPIL
Sbjct: 25 WKDLGIVDTLCKTCEDLKWKSPTKIQCEAIPLTLEG-KDIIGLAETGSGKTAAFAIPILQ 83
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LENP + +ALIL PTRELA
Sbjct: 84 AL---LENP------------------------------------QRYFALILTPTRELA 104
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G VK A +VGGM Q +L K PHIL+ATPGRL + ++ F+L
Sbjct: 105 FQISEQFEALGSSIGVKCAVIVGGMDMMSQALLLAKKPHILIATPGRLVDHLENTKGFNL 164
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L +LV+DE DR++ E+ IL RV PR+
Sbjct: 165 RSL---KFLVMDEADRILNMDFEVEVDKIL-RVI------PRE----------------- 197
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+T +FSAT+T KKV K ++R ++++P
Sbjct: 198 ---------RRTLLFSATMT----------------KKVQK----LQR----ASLRNPVK 224
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K + L + + KD YL + + + G +
Sbjct: 225 VEVSTKYQTVEKLQQYYVFIPVKFKDVYLVHILNELAGNSFM------------------ 266
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
I C CN+ R LL L +
Sbjct: 267 -------------IFCAT---------------------CNNTV---RTALLLRNLGFTA 289
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +R+ L +F+ +N SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR
Sbjct: 290 VPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHR 349
Query: 632 SGRTARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEADK-E 678
GRTARA G ++ + ++ L + + +EEE +ER AEA +
Sbjct: 350 VGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQLPLYPTEEEEVMVLQERVAEAQRIV 409
Query: 679 KTEDINVTVSSKKKKLKRKQNPSQVEVSELS 709
K E ++ S K K K++Q+ ++ + +E S
Sbjct: 410 KMEMKDIEDSKKLGKRKKRQDDNEDDDTEQS 440
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 36/61 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ G VK A +VGGM Q +L K PHIL+ATPG
Sbjct: 92 YFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALLLAKKPHILIATPGR 151
Query: 1414 L 1414
L
Sbjct: 152 L 152
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ LY ++ + K+ LP +P +E + ++++R+
Sbjct: 345 DYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQ--LPLYPTEEEEVMVLQERV 402
Query: 1299 DLAKSIEYLESK 1310
A+ I +E K
Sbjct: 403 AEAQRIVKMEMK 414
>gi|350398997|ref|XP_003485378.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
impatiens]
Length = 453
Score = 226 bits (577), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 159/477 (33%), Positives = 243/477 (50%), Gaps = 76/477 (15%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
T E V+ W I +T+ + +K+PTKIQ +P L KD++G AETG
Sbjct: 7 TKQQEQENVKELTWKDLGIVDTLCKTCEDLKWKSPTKIQCEAIPLTLEG-KDVIGLAETG 65
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
SGKT AF IPIL + LENP +
Sbjct: 66 SGKTAAFAIPILQAL---LENP------------------------------------QR 86
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
+ALIL PTRELA Q+ G VK A +VGGM Q +L K PHIL+ATPGR
Sbjct: 87 YFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALLLAKKPHILIATPGR 146
Query: 937 LWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L + ++ F+L L +LV+DE DR++ E+ IL RV E R+T +F
Sbjct: 147 LVDHLENTKGFNLRSL---KFLVMDEADRILNMDFEVEVDKIL-RVIPRE----RRTLLF 198
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T KKV K ++R ++++P V+++ K + L +
Sbjct: 199 SATMT----------------KKVQK----LQRA----SLRNPVKVEVSTKYQTVEKLQQ 234
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
I KD YL + + + G + ++FC + ++ R LL L + +PLH M+Q
Sbjct: 235 YYIFIPVKFKDVYLVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQN 294
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
+R+ L +F+ +N SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA
Sbjct: 295 KRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRS 354
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
G ++ + ++ LY ++ + K+ LP +P +E + ++++R+ A+ I +E K
Sbjct: 355 GRSITFVTQYDVELYQRIEQLISKQ--LPLYPTEEEEVMVLQERVAEAQRIVKMEMK 409
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 164/584 (28%), Positives = 251/584 (42%), Gaps = 169/584 (28%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
T E V+ W I +T+ + +K+PTKIQ +P L KD++G AETG
Sbjct: 7 TKQQEQENVKELTWKDLGIVDTLCKTCEDLKWKSPTKIQCEAIPLTLEG-KDVIGLAETG 65
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKT AF IPIL + LENP +
Sbjct: 66 SGKTAAFAIPILQAL---LENP------------------------------------QR 86
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
+ALIL PTRELA Q+ G VK A +VGGM Q +L K PHIL+ATPGR
Sbjct: 87 YFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALLLAKKPHILIATPGR 146
Query: 320 LWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
L + ++ F+L L +LV+DE DR++ E+ IL + PR+
Sbjct: 147 LVDHLENTKGFNLRSL---KFLVMDEADRILNMDFEVEVDKILRVI-------PRE---- 192
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
R+T +FSAT+T KKV K ++
Sbjct: 193 ----------------------RRTLLFSATMT----------------KKVQK----LQ 210
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
R ++++P V+++ K + L + I KD YL + + + G
Sbjct: 211 R----ASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAG--------- 257
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
+S++ + C + ++
Sbjct: 258 ----------------------------------NSFMIF------------CATCNNTV 271
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
R LL L + +PLH M+Q +R+ L +F+ +N SIL++TDVA+RGLDIP ++ VI+
Sbjct: 272 RTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVIN 331
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENN 667
+ +P S+ YIHR GRTARA G ++ + ++ L + + +EEE
Sbjct: 332 FDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQLPLYPTEEEEVM 391
Query: 668 EEEER-AEADK-EKTEDINVTVSSKKKKLKRKQNPSQVEVSELS 709
+ER AEA + K E ++ S K K K++Q+ ++ + +E S
Sbjct: 392 VLQERVAEAQRIVKMEMKDIEDSKKLGKRKKRQDDNEEDDTEQS 435
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ G VK A +VGGM Q +L K PHIL+ATPG
Sbjct: 87 YFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALLLAKKPHILIATPGR 146
Query: 1414 LSLKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENA 1468
L +++LE+ N R +L D MD ++ + +++ R
Sbjct: 147 L----------VDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTL 196
Query: 1469 LMSKALVSKRKELQ 1482
L S + K ++LQ
Sbjct: 197 LFSATMTKKVQKLQ 210
Score = 43.1 bits (100), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ LY ++ + K+ LP +P +E + ++++R+
Sbjct: 340 DYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQ--LPLYPTEEEEVMVLQERV 397
Query: 1299 DLAKSIEYLESK 1310
A+ I +E K
Sbjct: 398 AEAQRIVKMEMK 409
>gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba]
gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba]
Length = 522
Score = 226 bits (577), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 164/510 (32%), Positives = 255/510 (50%), Gaps = 81/510 (15%)
Query: 754 EVDTSNNEDMFVQMAE-----WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
E D S D AE W + ET+ +A + +++P+KIQ +P AL KD
Sbjct: 49 EYDPSKGSDREDDTAEDQKLTWKDLGLNETLCQACDELKWRSPSKIQREAIPVALQG-KD 107
Query: 809 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868
++G AETGSGKT AF +PIL + LENP
Sbjct: 108 VIGLAETGSGKTGAFALPILHAL---LENP------------------------------ 134
Query: 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928
+ +AL+L PTRELA Q+ G +K VVGGM Q L K PH
Sbjct: 135 ------QRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 188
Query: 929 ILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
I++ATPGRL + ++ + F+L I YLV+DE DR++ EL IL +
Sbjct: 189 IIIATPGRLVDHLENMKGFNLK---AIKYLVMDEADRILNMDFEVELDKILKVL-----P 240
Query: 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 1047
+ R+TF+FSAT+T KKV K+LQ ++K P V+++ K
Sbjct: 241 RERRTFLFSATMT----------------KKV-------KKLQRA-SLKDPVKVEVSNKY 276
Query: 1048 GITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLP 1106
+ L +S + KD YL + + G + ++FC++ ++ + +L L + +P
Sbjct: 277 QTVEQLQQSYLFIPVKYKDVYLVHILNDLAGNSFMIFCSTCNNTVKTALMLRALGLAAIP 336
Query: 1107 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166
LH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR G
Sbjct: 337 LHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVG 396
Query: 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIE 1226
RTARA G + L+ +I LY ++ + L K+ LP + +E + +++R+ A+
Sbjct: 397 RTARAGRSGKAITLVTQYDIELYQRIEHLLGKQ--LPLYKCEEDEVMALQERVAEAQRTA 454
Query: 1227 YLESKIKKNRPDNWLHRSGRTARANNEGLT 1256
LE K ++ H+ G ++E T
Sbjct: 455 KLELKDLEDTKGVKGHKRGGDIHDDSENFT 484
Score = 184 bits (467), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 151/525 (28%), Positives = 226/525 (43%), Gaps = 161/525 (30%)
Query: 137 EVDTSNNEDMFVQMAE-----WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
E D S D AE W + ET+ +A + +++P+KIQ +P AL KD
Sbjct: 49 EYDPSKGSDREDDTAEDQKLTWKDLGLNETLCQACDELKWRSPSKIQREAIPVALQG-KD 107
Query: 192 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251
++G AETGSGKT AF +PIL + LENP
Sbjct: 108 VIGLAETGSGKTGAFALPILHAL---LENP------------------------------ 134
Query: 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311
+ +AL+L PTRELA Q+ G +K VVGGM Q L K PH
Sbjct: 135 ------QRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 188
Query: 312 ILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
I++ATPGRL + ++ + F+L I YLV+DE DR++ EL IL +
Sbjct: 189 IIIATPGRLVDHLENMKGFNLK---AIKYLVMDEADRILNMDFEVELDKILKVL------ 239
Query: 371 QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 430
PR+ R+TF+FSAT+T KKV
Sbjct: 240 -PRE--------------------------RRTFLFSATMT----------------KKV 256
Query: 431 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490
K+LQ ++K P V+++ K + L +S + KD YL + + G
Sbjct: 257 -------KKLQR-ASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNDLAG- 307
Query: 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550
+S++ +
Sbjct: 308 ------------------------------------------NSFMIF------------ 313
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610
C++ ++ + +L L + +PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDI
Sbjct: 314 CSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDI 373
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
P ++ V+++ +P S+ YIHR GRTARA G + L+ +I L
Sbjct: 374 PHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIEL 418
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG L
Sbjct: 139 ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 198
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
++K +L K+I+YL + D L +MD ++ + +++ R L
Sbjct: 199 DHLENMKGFNL-KAIKYLVM----DEADRIL-----NMDFEVELDKILKVLPRERRTFLF 248
Query: 1471 SKALVSKRKELQ 1482
S + K K+LQ
Sbjct: 249 SATMTKKVKKLQ 260
>gi|223634733|sp|A5DQF1.2|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3
gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC 6260]
Length = 475
Score = 226 bits (577), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 166/517 (32%), Positives = 261/517 (50%), Gaps = 85/517 (16%)
Query: 733 KKLKQKKKKKQTYTSANKELLEVDTSNNEDMFV--QMAEWVKFNIPETIIRALYQKGFKT 790
KK K+KK+ T +E++E + ++D+ Q + + N+ ++ A+ + +
Sbjct: 27 KKNALKQKKQAPVTEKPEEIVETTSEASQDVNSEQQFHTFSELNLVPELMEAIEKLKYTK 86
Query: 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 850
PT IQS +P AL KDI+G A+TGSGKT AF IPIL +
Sbjct: 87 PTPIQSGAIPHALEG-KDIIGLAQTGSGKTAAFAIPILQSLW------------------ 127
Query: 851 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV 910
+ + YAL+LAPTRELA Q++ G V+ C+
Sbjct: 128 ---------------------EAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCI 166
Query: 911 VGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESG 969
VGGM Q R L + PHILVATPGR+ + ++ F L L YLV+DE DR+++
Sbjct: 167 VGGMDMMDQARDLMRKPHILVATPGRIMDHLENTKGFSLKSL---QYLVMDEADRLLDMD 223
Query: 970 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 1029
P L IL +V T+ R T++FSAT+T+ I +L
Sbjct: 224 FGPALDKIL-KVIPTK----RTTYLFSATMTNK-----------------------IAKL 255
Query: 1030 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSIS 1088
Q ++ P V ++ K L +S +L K+++L + + + G+++ VF + +
Sbjct: 256 QRA-SLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMGKSIIVFTRTCA 314
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
+R T L +L S +PLH + Q QRL +L++F+ +IL+ATDVAARGLDIP ++
Sbjct: 315 HTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVAARGLDIPSVDV 374
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL-PDFPI 1207
VI+Y +P S+ YIHR GRTARA G ++ L+ ++ +Y+++ + L K+ P P
Sbjct: 375 VINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESVLGFKLPKDPSPPR 434
Query: 1208 DESVLSLIKKRIDLA------KSIEYLESKIKKNRPD 1238
D VL+ + +D A ++ ++ E + KK R D
Sbjct: 435 D--VLNALHVHVDRASAEAIKQTKDFHEKRTKKKRDD 469
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 154/536 (28%), Positives = 232/536 (43%), Gaps = 158/536 (29%)
Query: 116 KKLKQKKKKKQTYTSANKELLEVDTSNNEDMFV--QMAEWVKFNIPETIIRALYQKGFKT 173
KK K+KK+ T +E++E + ++D+ Q + + N+ ++ A+ + +
Sbjct: 27 KKNALKQKKQAPVTEKPEEIVETTSEASQDVNSEQQFHTFSELNLVPELMEAIEKLKYTK 86
Query: 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 233
PT IQS +P AL KDI+G A+TGSGKT AF IPIL +
Sbjct: 87 PTPIQSGAIPHALEG-KDIIGLAQTGSGKTAAFAIPILQSLW------------------ 127
Query: 234 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV 293
+ + YAL+LAPTRELA Q++ G V+ C+
Sbjct: 128 ---------------------EAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCI 166
Query: 294 VGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESG 352
VGGM Q R L + PHILVATPGR+ + ++ F L L YLV+DE DR+++
Sbjct: 167 VGGMDMMDQARDLMRKPHILVATPGRIMDHLENTKGFSLKSL---QYLVMDEADRLLDMD 223
Query: 353 HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412
P L IL +V T+ R T++FSAT+T+
Sbjct: 224 FGPALDKIL-KVIPTK--------------------------------RTTYLFSATMTN 250
Query: 413 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472
I +LQ ++ P V ++ K L +S +L
Sbjct: 251 -----------------------KIAKLQR-ASLHEPVKVAVSNKYQTADNLVQSMMLVS 286
Query: 473 HDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 532
K+++L + + + G+++ I T+T C H
Sbjct: 287 DGYKNTFLIHLLNEFMGKSI---------------------IVFTRT-------CAH--- 315
Query: 533 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592
+R T L +L S +PLH + Q QRL +L++F+
Sbjct: 316 ------------------------TQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKS 351
Query: 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+
Sbjct: 352 GKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLV 407
Score = 63.5 bits (153), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+LAPTRELA Q++ G V+ C+VGGM Q R L + PHILVATPG
Sbjct: 133 YYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPHILVATPGR 192
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
+ + K L KS++YL + D L DMD + +++ R
Sbjct: 193 IMDHLENTKGFSL-KSLQYLV----MDEADRLL-----DMDFGPALDKILKVIPTKRTTY 242
Query: 1469 LMSKALVSKRKELQ 1482
L S + +K +LQ
Sbjct: 243 LFSATMTNKIAKLQ 256
>gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
gi|74669652|sp|Q4WJE9.1|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3
gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293]
Length = 472
Score = 226 bits (577), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 153/493 (31%), Positives = 238/493 (48%), Gaps = 95/493 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I + + A G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 57 LGIIDQLCEACETMGYKAPTPIQAESIPLALQGR-DLIGLAETGSGKTAAFALPILQAL- 114
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ENP + LILAPTRELA Q+
Sbjct: 115 --MENP------------------------------------QSFFGLILAPTRELAFQI 136
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G V+ A +VGGM Q L K PHI+VATPGRL L H T+
Sbjct: 137 SKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRL-----LDHLENTKGF 191
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH-------- 1001
L + YLV+DE DR+++ P L IL + + R+TF+FSAT++
Sbjct: 192 SLRTLKYLVMDEADRLLDMDFGPLLDKILKVL-----PRERRTFLFSATMSSKVESLQRA 246
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
SL N L + +K + VS TL +S +
Sbjct: 247 SLSNPLRVSVSSNKYQTVS-------------------------------TLLQSYLFLP 275
Query: 1062 HDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
H KD YL Y + + G+ T++F ++ +R++ LL L +PLH ++Q RL L
Sbjct: 276 HKHKDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGAL 335
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+FR ++ IL+ATDVAARGLDIP ++ V+++ +P S+ Y+HR GRTARA G+ +
Sbjct: 336 GKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISF 395
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNW 1240
+ ++ +++++ +L KK L ++ +++ + ++ +R+ A+ +E K +
Sbjct: 396 VTQYDVEIWLRIEGALGKK--LKEYELEKDEVMVLAERVGEAQRQAIMEMKNFDEKRGTK 453
Query: 1241 LHRSGRTARANNE 1253
+ G+ R+ +E
Sbjct: 454 AKKFGKGKRSRDE 466
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 146/504 (28%), Positives = 206/504 (40%), Gaps = 175/504 (34%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I + + A G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 57 LGIIDQLCEACETMGYKAPTPIQAESIPLALQGR-DLIGLAETGSGKTAAFALPILQAL- 114
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ENP + LILAPTRELA Q+
Sbjct: 115 --MENP------------------------------------QSFFGLILAPTRELAFQI 136
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G V+ A +VGGM Q L K PHI+VATPGRL L H T+
Sbjct: 137 SKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRL-----LDHLENTKGF 191
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YLV+DE DR+++ P L IL + PR+
Sbjct: 192 SLRTLKYLVMDEADRLLDMDFGPLLDKILKVL-------PRE------------------ 226
Query: 393 TMTETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
R+TF+FSAT++ SL N L + +K + VS
Sbjct: 227 --------RRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVS------------- 265
Query: 445 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
TL +S + H KD YL Y + + G++
Sbjct: 266 ------------------TLLQSYLFLPHKHKDIYLVYLLNEFVGQS------------- 294
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
I T+T+ E+ +R++ LL
Sbjct: 295 --------TIIFTRTVHET----------------------------------QRISFLL 312
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L +PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P
Sbjct: 313 RSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTD 372
Query: 625 SEIYIHRSGRTARANNEGLTVVLI 648
S+ Y+HR GRTARA G+ + +
Sbjct: 373 SKTYVHRVGRTARAGKSGVAISFV 396
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 36/62 (58%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S+ LILAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 120 SFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPG 179
Query: 1413 AL 1414
L
Sbjct: 180 RL 181
>gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans]
gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans]
Length = 519
Score = 226 bits (577), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 153/464 (32%), Positives = 239/464 (51%), Gaps = 76/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + E + +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 67 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 125
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LENP + +AL+L PTRELA
Sbjct: 126 AL---LENP------------------------------------QRYFALVLTPTRELA 146
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 147 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 206
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
I YLV+DE DR++ EL IL + + R+TF+FSAT+T
Sbjct: 207 K---AIKYLVMDEADRILNMDFEVELDKILKVL-----PRERRTFLFSATMT-------- 250
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K+LQ ++K P V+++ K + L +S + KD Y
Sbjct: 251 --------KKV-------KKLQRA-SLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVY 294
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC++ ++ + +L L + +PLH M+Q +RL L++F+ +N
Sbjct: 295 LVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKN 354
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + L+ +I
Sbjct: 355 RSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIE 414
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY ++ + L K++ L + +E + +++R+ A+ LE K
Sbjct: 415 LYQRIEHLLGKQLTL--YKCEEDEVMALQERVAEAQRTAKLELK 456
Score = 186 bits (473), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 145/504 (28%), Positives = 219/504 (43%), Gaps = 156/504 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + E + +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 67 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 125
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LENP + +AL+L PTRELA
Sbjct: 126 AL---LENP------------------------------------QRYFALVLTPTRELA 146
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 147 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 206
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
I YLV+DE DR++ EL IL + PR+
Sbjct: 207 K---AIKYLVMDEADRILNMDFEVELDKILKVL-------PRE----------------- 239
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+TF+FSAT+T KKV K+LQ ++K P
Sbjct: 240 ---------RRTFLFSATMT----------------KKV-------KKLQR-ASLKDPVK 266
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K + L +S + KD YL + + + G
Sbjct: 267 VEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAG---------------------- 304
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+S++ + C++ ++ + +L L +
Sbjct: 305 ---------------------NSFMIF------------CSTCNNTVKTALMLRALGLAA 331
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR
Sbjct: 332 IPLHGQMSQNKRLAALNKFKTKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHR 391
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTARA G + L+ +I L
Sbjct: 392 VGRTARAGRSGKAITLVSQYDIEL 415
Score = 60.1 bits (144), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG L
Sbjct: 136 ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 195
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
++K +L K+I+YL + D L +MD ++ + +++ R L
Sbjct: 196 DHLENMKGFNL-KAIKYL----VMDEADRIL-----NMDFEVELDKILKVLPRERRTFLF 245
Query: 1471 SKALVSKRKELQ 1482
S + K K+LQ
Sbjct: 246 SATMTKKVKKLQ 257
>gi|348511400|ref|XP_003443232.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Oreochromis niloticus]
Length = 479
Score = 226 bits (576), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 153/469 (32%), Positives = 237/469 (50%), Gaps = 77/469 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E + A Q G+K+PTKIQ +P AL KD++G AETGSGKT AF +PIL +
Sbjct: 42 LGVTEVLCEACDQLGWKSPTKIQIEAIPVALQG-KDVIGLAETGSGKTGAFALPILQSL- 99
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
L +P +L+ L+L PTRELA Q+
Sbjct: 100 --LASP------------------------------------QRLHTLVLTPTRELAFQI 121
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G VK A +VGG+ Q +L K PH+++ATPGRL + ++ + L
Sbjct: 122 SEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPHVVIATPGRLIDHLE--NTKGFSLR 179
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ +LV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 180 ALKFLVMDEADRILNMDFETEVDKILKVI-----PRERRTFLFSATMT------------ 222
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
KKV K ++R +K P ++ K L + I KD YL
Sbjct: 223 ----KKVQK----LERAA----LKDPVKCAVSTKYSTVDKLQQYYIFIPSKYKDCYLVSI 270
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G + ++FC++ ++ +R+ LL L + +PLH M+Q +RL L++F+ ++ S+L
Sbjct: 271 LNELAGNSFIIFCSTCNTAQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVL 330
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
LATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ + ++ L+ +
Sbjct: 331 LATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 390
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK---SIEYLESKIKKNRP 1237
+ + KK LP FP E + ++ +R+ A+ IE E K+ RP
Sbjct: 391 IETLIGKK--LPAFPTQEEEVMMLVERVSEAQRFAKIEMKEQGDKRKRP 437
Score = 114 bits (284), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++Q L +K P ++ K L + I KD YL + + G +
Sbjct: 220 TMTKKVQKLERAALKDPVKCAVSTKYSTVDKLQQYYIFIPSKYKDCYLVSILNELAGNSF 279
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC++ ++ +R+ LL L + +PLH M+Q +RL L++F+ ++ S+LLATDVA+RG
Sbjct: 280 IIFCSTCNTAQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRG 339
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDIP ++ VI+Y +P S+ YIHR GRTARA G ++ + ++ L
Sbjct: 340 LDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVEL 387
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 114/256 (44%), Gaps = 75/256 (29%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E + A Q G+K+PTKIQ +P AL KD++G AETGSGKT AF +PIL +
Sbjct: 42 LGVTEVLCEACDQLGWKSPTKIQIEAIPVALQG-KDVIGLAETGSGKTGAFALPILQSL- 99
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
L +P +L+ L+L PTRELA Q+
Sbjct: 100 --LASP------------------------------------QRLHTLVLTPTRELAFQI 121
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G VK A +VGG+ Q +L K PH+++ATPGRL + ++ + L
Sbjct: 122 SEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPHVVIATPGRLIDHLE--NTKGFSLR 179
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ +LV+DE DR++ E+ IL + PR+
Sbjct: 180 ALKFLVMDEADRILNMDFETEVDKILKVI-------PRE--------------------- 211
Query: 396 ETSQPRQTFVFSATLT 411
R+TF+FSAT+T
Sbjct: 212 -----RRTFLFSATMT 222
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA Q+ G VK A +VGG+ Q +L K PH+++ATPG L
Sbjct: 109 LVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPHVVIATPGRL 166
Score = 43.9 bits (102), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L+ ++ + KK LP FP E + ++ +R+
Sbjct: 359 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIETLIGKK--LPAFPTQEEEVMMLVERV 416
Query: 1299 DLAK---SIEYLESKIKKNRP 1316
A+ IE E K+ RP
Sbjct: 417 SEAQRFAKIEMKEQGDKRKRP 437
>gi|448535294|ref|XP_003870949.1| Rrp3 protein [Candida orthopsilosis Co 90-125]
gi|380355305|emb|CCG24822.1| Rrp3 protein [Candida orthopsilosis]
Length = 481
Score = 226 bits (576), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 142/446 (31%), Positives = 229/446 (51%), Gaps = 72/446 (16%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
+T+ + D ++ + + N+ ++ A+ Q F PT IQS +P AL KDI+G A T
Sbjct: 59 ETTIDPDAELKFNTFAELNLVPDLLEAIQQMNFAKPTPIQSEAIPHALEG-KDIIGLAVT 117
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF IPIL + + +
Sbjct: 118 GSGKTAAFAIPILQALWH---------------------------------------AQT 138
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
+ L+LAPTRELA Q+++ G ++ C+VGGM Q R L + PHI+VATPG
Sbjct: 139 PYFGLVLAPTRELAFQIKDTFDALGATMGLRSVCIVGGMDMMDQARDLMRKPHIIVATPG 198
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
R+ + ++ H L + YLV+DE DR+++ P L IL + R T++F
Sbjct: 199 RIMDHLE--HTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVI-----PPKRTTYLF 251
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T+ I++LQ ++ +P V ++ K L +
Sbjct: 252 SATMTNK-----------------------IEKLQRA-SLHNPVRVAVSTKYQTADNLVQ 287
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
S +L K++ L + + + G+++ VF +++ +R L +L + +PLH ++Q
Sbjct: 288 SMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQA 347
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QRL +L++F+ +IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA
Sbjct: 348 QRLGSLNKFKSSKANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRS 407
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKV 1200
G ++ LI ++ +Y+++ N+L KK+
Sbjct: 408 GKSISLITQYDLEMYLRIENALGKKL 433
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 140/510 (27%), Positives = 220/510 (43%), Gaps = 154/510 (30%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
+T+ + D ++ + + N+ ++ A+ Q F PT IQS +P AL KDI+G A T
Sbjct: 59 ETTIDPDAELKFNTFAELNLVPDLLEAIQQMNFAKPTPIQSEAIPHALEG-KDIIGLAVT 117
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF IPIL + + +
Sbjct: 118 GSGKTAAFAIPILQALWH---------------------------------------AQT 138
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
+ L+LAPTRELA Q+++ G ++ C+VGGM Q R L + PHI+VATPG
Sbjct: 139 PYFGLVLAPTRELAFQIKDTFDALGATMGLRSVCIVGGMDMMDQARDLMRKPHIIVATPG 198
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
R+ + ++ H L + YLV+DE DR+++ P L IL + P++T
Sbjct: 199 RIMDHLE--HTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIP------PKRT--- 247
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
T++FSAT+T+ I+
Sbjct: 248 ------------------------TYLFSATMTN-----------------------KIE 260
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
+LQ ++ +P V ++ K L +S +L K++ L + + + G+++
Sbjct: 261 KLQR-ASLHNPVRVAVSTKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSI------ 313
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
I T+T+ H RT +
Sbjct: 314 ---------------IVFTRTVA---------------------HAQRTALLAR------ 331
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
+L + +PLH ++Q QRL +L++F+ +IL+ATDVAARGLDIP ++ VI+
Sbjct: 332 -------ILGFNAVPLHGQLSQAQRLGSLNKFKSSKANILVATDVAARGLDIPSVDVVIN 384
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
Y +P S+ YIHR GRTARA G ++ LI
Sbjct: 385 YDIPTDSKAYIHRVGRTARAGRSGKSISLI 414
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+ L+LAPTRELA Q+++ G ++ C+VGGM Q R L + PHI+VATPG
Sbjct: 140 YFGLVLAPTRELAFQIKDTFDALGATMGLRSVCIVGGMDMMDQARDLMRKPHIIVATPG 198
>gi|432871164|ref|XP_004071864.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Oryzias latipes]
Length = 488
Score = 226 bits (576), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 152/482 (31%), Positives = 243/482 (50%), Gaps = 77/482 (15%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
+ED + + + + + A Q G+K+PTKIQ +P AL KD++G AETGSGK
Sbjct: 31 DEDAEAAVKTFKDLGVTDVLCEACDQLGWKSPTKIQVEAIPVALQG-KDVIGLAETGSGK 89
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879
T AF +PIL + L +P +L+
Sbjct: 90 TGAFALPILQSL---LASP------------------------------------QRLHT 110
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L PTRELA Q+ G VK A +VGG+ Q +L K PHI++ATPGRL +
Sbjct: 111 LVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPHIVIATPGRLID 170
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
++ + L + +LV+DE DR++ E+ IL + + R+TF+FSAT+
Sbjct: 171 HME--NTKGFSLRALKFLVMDEADRILNMDFETEVDKILKVI-----PRERRTFLFSATM 223
Query: 1000 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 1059
T KKV K ++R +K P ++ K L + +
Sbjct: 224 T----------------KKVQK----LQRAA----LKDPVKCAVSTKYSTVDKLQQYYVF 259
Query: 1060 CKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
KD YL + + G + ++FC++ ++ +R+ +L L + +PLH M+Q +RL
Sbjct: 260 IPAKYKDCYLVSILNELAGNSFMIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLG 319
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
L++F+ ++ S+LLATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++
Sbjct: 320 ALNKFKSKSRSVLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSI 379
Query: 1179 VLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK---SIEYLESKIKKN 1235
+ ++ L+ ++ + + KK LP FP E + ++ +R+ A+ +E E K+
Sbjct: 380 TFVTQYDVELFQRIESLIGKK--LPAFPTQEEEVMMLVERVSEAQRFARVEMKEQGEKRK 437
Query: 1236 RP 1237
RP
Sbjct: 438 RP 439
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++Q L +K P ++ K L + + KD YL + + G +
Sbjct: 222 TMTKKVQKLQRAALKDPVKCAVSTKYSTVDKLQQYYVFIPAKYKDCYLVSILNELAGNSF 281
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC++ ++ +R+ +L L + +PLH M+Q +RL L++F+ ++ S+LLATDVA+RG
Sbjct: 282 MIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRG 341
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDIP ++ VI+Y +P S+ YIHR GRTARA G ++ + ++ L
Sbjct: 342 LDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVEL 389
Score = 110 bits (274), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 121/273 (44%), Gaps = 75/273 (27%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
+ED + + + + + A Q G+K+PTKIQ +P AL KD++G AETGSGK
Sbjct: 31 DEDAEAAVKTFKDLGVTDVLCEACDQLGWKSPTKIQVEAIPVALQG-KDVIGLAETGSGK 89
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262
T AF +PIL + L +P +L+
Sbjct: 90 TGAFALPILQSL---LASP------------------------------------QRLHT 110
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L PTRELA Q+ G VK A +VGG+ Q +L K PHI++ATPGRL +
Sbjct: 111 LVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPHIVIATPGRLID 170
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ + L + +LV+DE DR++ E+ IL + PR+
Sbjct: 171 HME--NTKGFSLRALKFLVMDEADRILNMDFETEVDKILKVI-------PRE-------- 213
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLK 415
R+TF+FSAT+T ++
Sbjct: 214 ------------------RRTFLFSATMTKKVQ 228
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA Q+ G VK A +VGG+ Q +L K PHI++ATPG L
Sbjct: 111 LVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPHIVIATPGRL 168
Score = 43.5 bits (101), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L+ ++ + + KK LP FP E + ++ +R+
Sbjct: 361 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIESLIGKK--LPAFPTQEEEVMMLVERV 418
Query: 1299 DLAK---SIEYLESKIKKNRP 1316
A+ +E E K+ RP
Sbjct: 419 SEAQRFARVEMKEQGEKRKRP 439
>gi|408395320|gb|EKJ74502.1| hypothetical protein FPSE_05252 [Fusarium pseudograminearum CS3096]
Length = 487
Score = 226 bits (576), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 144/463 (31%), Positives = 234/463 (50%), Gaps = 79/463 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A + +K PT IQ +P AL R DI+G AETGSGKT AF +P+L ++
Sbjct: 65 LGVNDALCEACEKLNYKYPTPIQEQSIPVALQGR-DIIGLAETGSGKTAAFALPVLQALL 123
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K + L+ L+LAPTRELA Q+
Sbjct: 124 DKPQ---------------------------------------PLFGLVLAPTRELATQI 144
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A +VGG+ Q L K PHI+VATPGRL + H T+
Sbjct: 145 GQAFEALGSLISLRCAVIVGGLDMVPQSIALGKKPHIIVATPGRLVD-----HLEKTKGF 199
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + YL++DE DR+++ P + IL V + R+T++FSAT++ +++
Sbjct: 200 SLRTLKYLIMDEADRLLDMDFGPSIDKILKFV-----PRERRTYLFSATISSKIESL--- 251
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
++ S DP K+ + K TL + + H +KD +L
Sbjct: 252 -------QRASLRDPV-------------KVSISSNKYQTVSTLLQHYLFIPHPQKDVHL 291
Query: 1070 YYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y I +H G+ T+VF ++ +R++ LL L +PLH ++Q RL L++FR
Sbjct: 292 IYLINEHAGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTR 351
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDIP ++ V++Y +P+ S+ Y+HR GRTARA G+ + L+ ++ +
Sbjct: 352 DILVATDVAARGLDIPSVDVVLNYDLPQDSKTYVHRVGRTARAGKSGVAISLVTQYDLEI 411
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
Y+++ +L KK L ++P ++ + + R++ A+ + +E K
Sbjct: 412 YLRIEAALGKK--LGEYPTEKEEVMAFQSRVEEAQRVARIEMK 452
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 137/496 (27%), Positives = 210/496 (42%), Gaps = 159/496 (32%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A + +K PT IQ +P AL R DI+G AETGSGKT AF +P+L ++
Sbjct: 65 LGVNDALCEACEKLNYKYPTPIQEQSIPVALQGR-DIIGLAETGSGKTAAFALPVLQALL 123
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K + L+ L+LAPTRELA Q+
Sbjct: 124 DKPQ---------------------------------------PLFGLVLAPTRELATQI 144
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A +VGG+ Q L K PHI+VATPGRL + H T+
Sbjct: 145 GQAFEALGSLISLRCAVIVGGLDMVPQSIALGKKPHIIVATPGRLVD-----HLEKTKGF 199
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YL++DE DR+++ P + IL V PR+
Sbjct: 200 SLRTLKYLIMDEADRLLDMDFGPSIDKILKFV-------PRE------------------ 234
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+T++FSAT++ +++ ++ S DP K+
Sbjct: 235 --------RRTYLFSATISSKIES----------LQRASLRDPV-------------KVS 263
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
+ K TL + + H +KD +L Y I +H G++
Sbjct: 264 ISSNKYQTVSTLLQHYLFIPHPQKDVHLIYLINEHAGQS--------------------- 302
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
I T+T+ E+ +R++ LL L +
Sbjct: 303 TIVFTRTVWET----------------------------------QRVSILLRTLGFGAI 328
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLH ++Q RL L++FR IL+ATDVAARGLDIP ++ V++Y +P+ S+ Y+HR
Sbjct: 329 PLHGQLSQSSRLGALNKFRSGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYVHRV 388
Query: 633 GRTARANNEGLTVVLI 648
GRTARA G+ + L+
Sbjct: 389 GRTARAGKSGVAISLV 404
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G ++ A +VGG+ Q L K PHI+VATPG L
Sbjct: 131 GLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQSIALGKKPHIIVATPGRL 189
Score = 43.1 bits (100), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
++HR GRTARA G+ + L+ ++ +Y+++ +L KK L ++P ++ + + R+
Sbjct: 383 TYVHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKK--LGEYPTEKEEVMAFQSRV 440
Query: 1299 DLAKSIEYLESK 1310
+ A+ + +E K
Sbjct: 441 EEAQRVARIEMK 452
>gi|452977644|gb|EME77410.1| hypothetical protein MYCFIDRAFT_83332 [Pseudocercospora fijiensis
CIRAD86]
Length = 498
Score = 226 bits (575), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 149/437 (34%), Positives = 220/437 (50%), Gaps = 79/437 (18%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E + A FK PT IQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 76 FADLGVREELCDACDSLNFKRPTAIQREAIPIALEG-KDIIGLAETGSGKTAAFALPILQ 134
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+++K + L+ LILAPTRELA
Sbjct: 135 ALLDKPQ---------------------------------------PLFGLILAPTRELA 155
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ G V+ A +VGGM Q L K PHI+VATPGRL L H T
Sbjct: 156 YQISQQFEALGSLISVRCAVIVGGMDMVPQAVALAKKPHIVVATPGRL-----LDHMENT 210
Query: 950 ELYKIN---YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
+ + + YLV+DE DR+++ P ILD++ + E ++ R+T +FSAT++ L NS
Sbjct: 211 KGFSVKHFKYLVMDEADRLLDLDFGP----ILDKI-LQELNRDRRTMLFSATMSTKL-NS 264
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT-KTLTESKILCKHDEK 1065
L +++P V ++E T K L + + H K
Sbjct: 265 LTRAA-----------------------LQNPVRVSISESSYQTVKNLMQRYMFIPHKYK 301
Query: 1066 DSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
D YL Y + + G+T ++F +I +R+ +L L S +PLH MNQ RL L++FR
Sbjct: 302 DIYLVYLLDEFAGKTCIIFTRTIHETQRIAYVLRALGRSAIPLHGQMNQSARLGALNKFR 361
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+ IL+ATDVAARGLDIP ++ V+++ +P S+ Y+HR GRTARA G+ + ++
Sbjct: 362 GGSRDILVATDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISIVTQY 421
Query: 1185 EIPLYIKMFNSLEKKVD 1201
+I +Y ++ +L KK++
Sbjct: 422 DIEIYQRIEKALGKKLE 438
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 153/528 (28%), Positives = 220/528 (41%), Gaps = 166/528 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E + A FK PT IQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 76 FADLGVREELCDACDSLNFKRPTAIQREAIPIALEG-KDIIGLAETGSGKTAAFALPILQ 134
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+++K + L+ LILAPTRELA
Sbjct: 135 ALLDKPQ---------------------------------------PLFGLILAPTRELA 155
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ G V+ A +VGGM Q L K PHI+VATPGRL L H T
Sbjct: 156 YQISQQFEALGSLISVRCAVIVGGMDMVPQAVALAKKPHIVVATPGRL-----LDHMENT 210
Query: 333 ELYKI---NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+ + + YLV+DE DR+++ P ILD++
Sbjct: 211 KGFSVKHFKYLVMDEADRLLDLDFGP----ILDKI------------------------- 241
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
+ E ++ R+T +FSAT++ L NSL +++P
Sbjct: 242 ----LQELNRDRRTMLFSATMSTKL-NSLTRAA-----------------------LQNP 273
Query: 450 KIVDLTEKIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508
V ++E T K L + + H KD YL Y + + G+T C
Sbjct: 274 VRVSISESSYQTVKNLMQRYMFIPHKYKDIYLVYLLDEFAGKT-C--------------- 317
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 568
I T+T+ E+ +R+ +L L
Sbjct: 318 -----IIFTRTIHET----------------------------------QRIAYVLRALG 338
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
S +PLH MNQ RL L++FR + IL+ATDVAARGLDIP ++ V+++ +P S+ Y
Sbjct: 339 RSAIPLHGQMNQSARLGALNKFRGGSRDILVATDVAARGLDIPSVDLVLNFDLPPDSKTY 398
Query: 629 IHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ-----EEENNEEEE 671
+HR GRTARA G+ + ++ +I + + EE E EE
Sbjct: 399 VHRVGRTARAGKSGVAISIVTQYDIEIYQRIEKALGKKLEEHATEREE 446
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LILAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG L
Sbjct: 145 GLILAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVPQAVALAKKPHIVVATPGRL 203
>gi|238589911|ref|XP_002392157.1| hypothetical protein MPER_08306 [Moniliophthora perniciosa FA553]
gi|215457826|gb|EEB93087.1| hypothetical protein MPER_08306 [Moniliophthora perniciosa FA553]
Length = 401
Score = 226 bits (575), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 162/452 (35%), Positives = 215/452 (47%), Gaps = 146/452 (32%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
F T IQ+ +P AL R D+VG A+TGSGKTLA+G+PIL +++
Sbjct: 12 FLLXTPIQAQAIPLALQGR-DVVGVAQTGSGKTLAYGLPILHNLLS-------------- 56
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNK-LYALILAPTRELAIQVQNHI---------- 896
E S ++K+ + L ALILAPTRELA+QV +H+
Sbjct: 57 ------------EATSTPLPLHIRKSSKRPLRALILAPTRELALQVSSHLNMCLSPFDEA 104
Query: 897 -------------------------------------LDAGKYTP--VKVACVVGGMSTE 917
A K P V VA +VGGMS +
Sbjct: 105 VKEEEETETSLNAKGKNKGKGKEKAQPQDDDERLTTDAKAPKKAPPLVSVAAIVGGMSAQ 164
Query: 918 KQLRILNKCPHILVATPGRLWEFIQ----LGHFHLTELYKINYLVIDETDRMIESGHFPE 973
KQ RIL++ +LVATPGRLW+ IQ L H + + YL DE DRMIE+GHF E
Sbjct: 165 KQRRILDRGIDVLVATPGRLWDIIQDDDNLAH---AIRHGLRYLCWDEADRMIEAGHFKE 221
Query: 974 LKNILDRVTMTETS-------------------QPR----QTFVFSATLTHSLKNSLNLK 1010
L IL R+T+ S +P QTFVFSATL+ L+ N+K
Sbjct: 222 LDGIL-RLTLRGESDELIPDDSGSKEDDDDDDTKPHDGTLQTFVFSATLSKELQR--NVK 278
Query: 1011 K-------GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 1063
K G+ S+ + D + RL P+++DL+ G+ TLTESK+ C
Sbjct: 279 KRSRPKSQGKKNSQPATTLDDLVLRLDFRDPSGGPEVIDLSPDDGVVDTLTESKVECLVT 338
Query: 1064 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
+KD YLYYF+L++PGRTL + RQRLKNLDRF
Sbjct: 339 DKDIYLYYFLLRYPGRTL-----------------------------LEMRQRLKNLDRF 369
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVP 1155
+ N +LLATD+AARGLDI G++HV+HY +P
Sbjct: 370 KSSPNCVLLATDIAARGLDIQGVDHVVHYQIP 401
Score = 209 bits (532), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 162/510 (31%), Positives = 223/510 (43%), Gaps = 178/510 (34%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
F T IQ+ +P AL R D+VG A+TGSGKTLA+G+PIL +++
Sbjct: 12 FLLXTPIQAQAIPLALQGR-DVVGVAQTGSGKTLAYGLPILHNLLS-------------- 56
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNK-LYALILAPTRELAIQVQNHI---------- 279
E S ++K+ + L ALILAPTRELA+QV +H+
Sbjct: 57 ------------EATSTPLPLHIRKSSKRPLRALILAPTRELALQVSSHLNMCLSPFDEA 104
Query: 280 -------------------------------------LDAGKYTP--VKVACVVGGMSTE 300
A K P V VA +VGGMS +
Sbjct: 105 VKEEEETETSLNAKGKNKGKGKEKAQPQDDDERLTTDAKAPKKAPPLVSVAAIVGGMSAQ 164
Query: 301 KQLRILNKCPHILVATPGRLWEFIQ----LGHFHLTELYKINYLVIDETDRMIESGHFPE 356
KQ RIL++ +LVATPGRLW+ IQ L H + + YL DE DRMIE+GHF E
Sbjct: 165 KQRRILDRGIDVLVATPGRLWDIIQDDDNLAH---AIRHGLRYLCWDEADRMIEAGHFKE 221
Query: 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPR----QTFVFSATLTH 412
L IL R+T+ ES + + ++P QTFVFSATL+
Sbjct: 222 LDGIL-RLTLRG---------ESDELIPDDSGSKEDDDDDDTKPHDGTLQTFVFSATLSK 271
Query: 413 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472
L+ ++ K+ + KS+ P+ T ++ +
Sbjct: 272 ELQRNVK-KRSRPKSQGKKNSQPAT---------------------------TLDDLVLR 303
Query: 473 HDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 532
D +D P+++DL+ G+ TLTESK+ C +K
Sbjct: 304 LDFRDPS-----------------------GGPEVIDLSPDDGVVDTLTESKVECLVTDK 340
Query: 533 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592
D YLYYF+L++PGRTL + RQRLKNLDRF+
Sbjct: 341 DIYLYYFLLRYPGRTL-----------------------------LEMRQRLKNLDRFKS 371
Query: 593 QNNSILLATDVAARGLDIPGIEHVIHYHVP 622
N +LLATD+AARGLDI G++HV+HY +P
Sbjct: 372 SPNCVLLATDIAARGLDIQGVDHVVHYQIP 401
Score = 48.5 bits (114), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 45/108 (41%), Gaps = 49/108 (45%)
Query: 1356 ALILAPTRELAIQVQNHI------------------------------------------ 1373
ALILAPTRELA+QV +H+
Sbjct: 77 ALILAPTRELALQVSSHLNMCLSPFDEAVKEEEETETSLNAKGKNKGKGKEKAQPQDDDE 136
Query: 1374 -----LDAGKYTP--VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A K P V VA +VGGMS +KQ RIL++ +LVATPG L
Sbjct: 137 RLTTDAKAPKKAPPLVSVAAIVGGMSAQKQRRILDRGIDVLVATPGRL 184
>gi|401625423|gb|EJS43432.1| rrp3p [Saccharomyces arboricola H-6]
Length = 500
Score = 226 bits (575), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 235/454 (51%), Gaps = 73/454 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ +I+A + PT IQS +P AL DI+G A+TGSGKT AF IPIL
Sbjct: 82 FSQLNLVPELIQACKNLNYSKPTPIQSKSIPPALKGH-DIIGLAQTGSGKTAAFAIPIL- 139
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
N+L + E YA ILAPTRELA
Sbjct: 140 ---NRLWHDQEP-----------------------------------YYACILAPTRELA 161
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q++ G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ +
Sbjct: 162 QQIKEAFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGF 219
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L K+ +LV+DE DR+++ P +LDR+ +Q R T++FSAT+T
Sbjct: 220 SLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLFSATMT--------- 266
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
SK K+ + ++ +P ++ K TL ++ ++ K++YL
Sbjct: 267 ----SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYL 311
Query: 1070 YYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + + G+T++ F + ++ +RL+ L +L+ S LH +NQ QR+ LD F+
Sbjct: 312 VYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKR 371
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+IL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 372 AILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 431
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
+++ L KK LP +D++++ ++ +D A
Sbjct: 432 ILRIEEVLGKK--LPKENVDKNIILTLRDSVDKA 463
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 142/503 (28%), Positives = 215/503 (42%), Gaps = 153/503 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ +I+A + PT IQS +P AL DI+G A+TGSGKT AF IPIL
Sbjct: 82 FSQLNLVPELIQACKNLNYSKPTPIQSKSIPPALKGH-DIIGLAQTGSGKTAAFAIPIL- 139
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
N+L + E YA ILAPTRELA
Sbjct: 140 ---NRLWHDQEP-----------------------------------YYACILAPTRELA 161
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q++ G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ +
Sbjct: 162 QQIKEAFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGF 219
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L K+ +LV+DE DR+++ P +LDR+
Sbjct: 220 SLRKLKFLVMDEADRLLDMEFGP--------------------------------VLDRI 247
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
+Q R T++FSAT+T SK K+ + ++ +P
Sbjct: 248 LKIIPTQERTTYLFSATMT-------------SKIDKLQRA-----------SLTNPVKC 283
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
++ K TL ++ ++ K++YL Y + + G+T+
Sbjct: 284 AVSNKYQTVDTLVQTLMVVPGGLKNTYLVYLLNEFIGKTM-------------------- 323
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
I T+T ++ L CN +L+ S
Sbjct: 324 -IIFTRTKANAERLSG---------------------LCN-------------LLEFSAT 348
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
LH +NQ QR+ LD F+ +IL+ATDVAARGLDIP ++ V++Y +P S+ YIHR
Sbjct: 349 ALHGDLNQNQRMGALDLFKAGKRAILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRV 408
Query: 633 GRTARANNEGLTVVLIESDEIPL 655
GRTARA G ++ L+ ++ L
Sbjct: 409 GRTARAGRSGKSISLVSQYDLEL 431
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 149 YYACILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGR 208
Query: 1414 L 1414
L
Sbjct: 209 L 209
>gi|156083603|ref|XP_001609285.1| DEAD/DEAH box helicase [Babesia bovis T2Bo]
gi|154796536|gb|EDO05717.1| DEAD/DEAH box helicase, putative [Babesia bovis]
Length = 618
Score = 226 bits (575), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 185/590 (31%), Positives = 269/590 (45%), Gaps = 121/590 (20%)
Query: 723 EEIQSD--EPHSKKLKQKKKKKQTYTSANKELLEV--DTSN------NEDMFVQMAEWVK 772
E +Q D EP KK ++ KK + + L EV D N N +F Q A
Sbjct: 42 EVLQDDSVEPVPKKQRKSKKASEGTAQESPSLPEVSDDQVNEATRGWNNILFDQWA---- 97
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
IP I R LY +PT IQ +V +L A IV AETGSGKTLAF +PI +
Sbjct: 98 --IPIGIRRNLYGANMTSPTVIQRLVFKPSLTAGMHIVACAETGSGKTLAFSLPIALSLK 155
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
E P AL + PTRELA+QV
Sbjct: 156 CSDEKPVS--------------------------------------ALAILPTRELALQV 177
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
++ + K T V ++GGMS +KQ R+L P ++VATPGRLW+ +Q ++ +
Sbjct: 178 KDTMSMLIKGTQHSVFAIIGGMSIQKQERVLKHQPEVIVATPGRLWDIMQ----DVSITF 233
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
K+ YLV+DE DR++ F EL NI+D+V +T Q F++SAT+ + K+ L K
Sbjct: 234 KLQYLVLDEADRLVSEQSFKELGNIVDKVRERDT----QCFIYSATILNREKDLQALFKL 289
Query: 1013 QSKSKKV-----SKGDPSIKRLQDLLNIKSPKIVDL-TEKIGITKTLTESKILCKHDEKD 1066
S + KGD + Q + K V+ T + L I C DE++
Sbjct: 290 LKLSNPMVCTASHKGDLVLPYDQFIKKRPFKKTVEEDTSNTTLPPNLRFRIIKCLDDERE 349
Query: 1067 SYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTML-------------KCSPL--- 1105
L ++++H ++F NSIS RL LL+++ C L
Sbjct: 350 LKLIAYMMEHHVNNDSAHIIIFVNSISYAYRLEPLLSLIFWRDKHELRIAKKHCMTLNKE 409
Query: 1106 -------PLHASMNQRQRLKNLD-----------RFRDQNNSILLATDVAARGLDIPGIE 1147
+H+ + Q+QRLK L+ RF ++L+ TDVAARG+DIP I
Sbjct: 410 PKFNFITSIHSRLKQKQRLKRLEQYVAIDCLIRPRFTKNKKAVLICTDVAARGVDIPNIT 469
Query: 1148 HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPI 1207
VIH+ VPR + ++HRSGRTAR G + + ES E+ + +F ++ K +
Sbjct: 470 EVIHFQVPRNASTFVHRSGRTARCEAAGTAVCICESSEVDTWNDLFKAINK-----NMAT 524
Query: 1208 DESVLSLI--------KKRIDLAKSIEYLESKI-KKNRPDNWLHRSGRTA 1248
+E ++ I K+ + LA IE E KI KK + WL + + A
Sbjct: 525 EEVAMACIPPKQYQRYKRLLALASDIEEQEHKISKKEKTKAWLQMAAKQA 574
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 178/597 (29%), Positives = 257/597 (43%), Gaps = 179/597 (29%)
Query: 106 EEIQSD--EPSSKKLKQKKKKKQTYTSANKELLEV--DTSN------NEDMFVQMAEWVK 155
E +Q D EP KK ++ KK + + L EV D N N +F Q A
Sbjct: 42 EVLQDDSVEPVPKKQRKSKKASEGTAQESPSLPEVSDDQVNEATRGWNNILFDQWA---- 97
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
IP I R LY +PT IQ +V +L A IV AETGSGKTLAF +PI +
Sbjct: 98 --IPIGIRRNLYGANMTSPTVIQRLVFKPSLTAGMHIVACAETGSGKTLAFSLPIALSLK 155
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
E P AL + PTRELA+QV
Sbjct: 156 CSDEKPVS--------------------------------------ALAILPTRELALQV 177
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
++ + K T V ++GGMS +KQ R+L P ++VATPGRLW+ +Q ++ +
Sbjct: 178 KDTMSMLIKGTQHSVFAIIGGMSIQKQERVLKHQPEVIVATPGRLWDIMQ----DVSITF 233
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
K+ YLV+DE DR++ +E S F EL NI+D+V
Sbjct: 234 KLQYLVLDEADRLV-----------------SEQS-----------FKELGNIVDKVRER 265
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
+T Q F++SAT+ LN +K ++ L LL + +P + +
Sbjct: 266 DT----QCFIYSATI-------LNREK-------------DLQALFKLLKLSNPMVCTAS 301
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K ++ +D+ FI + P + EE D N P +L +I
Sbjct: 302 HK---------GDLVLPYDQ-------FIKKRPFKKTVEE--DTSNTTLPP--NLRFRI- 340
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTML--- 567
I C DE++ L ++++H ++F NSIS RL LL+++
Sbjct: 341 ---------IKCLDDERELKLIAYMMEHHVNNDSAHIIIFVNSISYAYRLEPLLSLIFWR 391
Query: 568 ----------KCSPL----------PLHASMNQRQRLKNLD-----------RFRDQNNS 596
C L +H+ + Q+QRLK L+ RF +
Sbjct: 392 DKHELRIAKKHCMTLNKEPKFNFITSIHSRLKQKQRLKRLEQYVAIDCLIRPRFTKNKKA 451
Query: 597 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+L+ TDVAARG+DIP I VIH+ VPR + ++HRSGRTAR G V + ES E+
Sbjct: 452 VLICTDVAARGVDIPNITEVIHFQVPRNASTFVHRSGRTARCEAAGTAVCICESSEV 508
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL + PTRELA+QV++ + K T V ++GGMS +KQ R+L P ++VATPG L
Sbjct: 164 ALAILPTRELALQVKDTMSMLIKGTQHSVFAIIGGMSIQKQERVLKHQPEVIVATPGRLW 223
Query: 1416 --LKRIDLAKSIEYL 1428
++ + + ++YL
Sbjct: 224 DIMQDVSITFKLQYL 238
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1278
+D+ E + ++ +N ++HRSGRTAR G + + ES E+ + +F ++ K
Sbjct: 463 VDIPNITEVIHFQVPRN-ASTFVHRSGRTARCEAAGTAVCICESSEVDTWNDLFKAINK- 520
Query: 1279 VDLPDFPIDESVLSLI--------KKRIDLAKSIEYLESKI-KKNRPDNWLEKAAKDMDI 1329
+ +E ++ I K+ + LA IE E KI KK + WL+ AAK DI
Sbjct: 521 ----NMATEEVAMACIPPKQYQRYKRLLALASDIEEQEHKISKKEKTKAWLQMAAKQADI 576
Query: 1330 IIDDE 1334
+ DE
Sbjct: 577 ELSDE 581
>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
Length = 455
Score = 226 bits (575), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 242/473 (51%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + +SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKESSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEHLIGKK--LPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 427
Score = 181 bits (458), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 216/501 (43%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + +SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKESSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 42.0 bits (97), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 14/158 (8%)
Query: 1171 ANNEGLTLVLIES---DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEY 1227
NN T +L+ + IPL+ +M S ++ L F ES + L I +
Sbjct: 273 CNNTQRTALLLRNLGFTAIPLHGQMSQS-KRLGSLNKFKAKESSILLATDVASRGLDIPH 331
Query: 1228 LESKIKKNRPD---NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1284
++ + + P +++HR GRTARA G + + ++ L+ ++ + + KK LP F
Sbjct: 332 VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPGF 389
Query: 1285 PIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1317
P + + ++ +R+ A+ +E K K++R D
Sbjct: 390 PTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 427
>gi|213410545|ref|XP_002176042.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
yFS275]
gi|212004089|gb|EEB09749.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
yFS275]
Length = 461
Score = 226 bits (575), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 154/485 (31%), Positives = 243/485 (50%), Gaps = 79/485 (16%)
Query: 733 KKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKF---NIPETIIRALYQKGFK 789
KK K K + T A + EV +N D V+ E V F + + I A + FK
Sbjct: 6 KKRKTSAKGAKISTKAITKEDEVPKTN--DSAVEQVEGVTFKELGVIDEICEACEKLNFK 63
Query: 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 849
P+ IQ +P+AL ++DI+G A+TGSGKT AF IP++ + ENP
Sbjct: 64 APSAIQKEAIPAAL-KQQDIIGLAQTGSGKTAAFAIPVIQAL---WENPCP--------- 110
Query: 850 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVAC 909
+ ++LAPTRELA Q+ G VK
Sbjct: 111 ---------------------------FFGVVLAPTRELAYQISEQFEALGGAMGVKSVV 143
Query: 910 VVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIES 968
+VGGM Q ++K PHILV TPGRL + ++ F L L YLV+DE DR+++
Sbjct: 144 IVGGMDMVTQAVAISKKPHILVCTPGRLMDHLENTKGFSLRNL---KYLVMDEADRLLDM 200
Query: 969 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 1028
P + IL + + R+TF+FSAT+T SK +K+ +
Sbjct: 201 DFGPIIDKILKVI-----PKERRTFLFSATMT-------------SKVEKLQRA------ 236
Query: 1029 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSI 1087
++ +P + ++ K TL + + KD+YL Y + + G++++ F ++
Sbjct: 237 -----SLHNPVRIAVSSKFSTVDTLLQKYLFFPFKHKDTYLVYIVNEMAGQSMIIFTRTV 291
Query: 1088 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 1147
+ +R+ LL L S +PLH ++Q RL L++F+ SIL+ATDVAARGLDIP ++
Sbjct: 292 NDTQRVAILLRSLGFSAIPLHGQLSQSSRLGALNKFKSGARSILVATDVAARGLDIPLVD 351
Query: 1148 HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPI 1207
VI+Y +P S+ YIHR GRTARA G ++ L+ ++ ++++ +++KK++ D P
Sbjct: 352 AVINYDIPTDSKAYIHRVGRTARAGRSGKSIALVTQYDLEPFLRIEAAIQKKMEEYDAPK 411
Query: 1208 DESVL 1212
++ +L
Sbjct: 412 EDVLL 416
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 152/537 (28%), Positives = 228/537 (42%), Gaps = 161/537 (29%)
Query: 116 KKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKF---NIPETIIRALYQKGFK 172
KK K K + T A + EV +N D V+ E V F + + I A + FK
Sbjct: 6 KKRKTSAKGAKISTKAITKEDEVPKTN--DSAVEQVEGVTFKELGVIDEICEACEKLNFK 63
Query: 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 232
P+ IQ +P+AL ++DI+G A+TGSGKT AF IP++ + ENP
Sbjct: 64 APSAIQKEAIPAAL-KQQDIIGLAQTGSGKTAAFAIPVIQAL---WENPCP--------- 110
Query: 233 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVAC 292
+ ++LAPTRELA Q+ G VK
Sbjct: 111 ---------------------------FFGVVLAPTRELAYQISEQFEALGGAMGVKSVV 143
Query: 293 VVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIES 351
+VGGM Q ++K PHILV TPGRL + ++ F L L YLV+DE DR+++
Sbjct: 144 IVGGMDMVTQAVAISKKPHILVCTPGRLMDHLENTKGFSLRNL---KYLVMDEADRLLDM 200
Query: 352 GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
P + IL + P++ R+TF+FSAT+T
Sbjct: 201 DFGPIIDKILKVI-------PKE--------------------------RRTFLFSATMT 227
Query: 412 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471
SK +K+ + ++ +P + ++ K TL + +
Sbjct: 228 -------------SKVEKLQRA-----------SLHNPVRIAVSSKFSTVDTLLQKYLFF 263
Query: 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 531
KD+YL Y + + G+++ I T+T+ ++
Sbjct: 264 PFKHKDTYLVYIVNEMAGQSM---------------------IIFTRTVNDT-------- 294
Query: 532 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 591
+R+ LL L S +PLH ++Q RL L++F+
Sbjct: 295 --------------------------QRVAILLRSLGFSAIPLHGQLSQSSRLGALNKFK 328
Query: 592 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+
Sbjct: 329 SGARSILVATDVAARGLDIPLVDAVINYDIPTDSKAYIHRVGRTARAGRSGKSIALV 385
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 65/136 (47%), Gaps = 19/136 (13%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ++LAPTRELA Q+ G VK +VGGM Q ++K PHILV TPG
Sbjct: 111 FFGVVLAPTRELAYQISEQFEALGGAMGVKSVVIVGGMDMVTQAVAISKKPHILVCTPGR 170
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI--IIDDENLIQPKANSRE 1466
L + K L ++++YL + D L DMD IID + PK R
Sbjct: 171 LMDHLENTKGFSL-RNLKYL----VMDEADRLL-----DMDFGPIIDKILKVIPK--ERR 218
Query: 1467 NALMSKALVSKRKELQ 1482
L S + SK ++LQ
Sbjct: 219 TFLFSATMTSKVEKLQ 234
>gi|26450667|dbj|BAC42444.1| putative replication protein A1 [Arabidopsis thaliana]
gi|28951031|gb|AAO63439.1| At5g60990 [Arabidopsis thaliana]
Length = 456
Score = 226 bits (575), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 153/480 (31%), Positives = 245/480 (51%), Gaps = 77/480 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + E +++A + G+K P+KIQ+ +P AL KD++G A+TGSGKT AF IPIL
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEG-KDVIGLAQTGSGKTGAFAIPILQ 69
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ + + E G ++ +A +L+PTRELA
Sbjct: 70 ALLEYVYD----SEPKKG-----------------------RRPDPAFFACVLSPTRELA 102
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
IQ+ G ++ A +VGG+ +Q L K PH++VATPGRLW+ H++
Sbjct: 103 IQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWD-------HMS 155
Query: 950 E-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004
+ L + YLV+DE DR++ L IL+ + + R+TF+FSAT+T
Sbjct: 156 DTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLE-----RETFLFSATMT---- 206
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
KKV ++LQ +++P ++ K TL +
Sbjct: 207 ------------KKV-------RKLQRAC-LRNPVKIEAASKYSTVDTLKQQYRFVAAKY 246
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD YL Y + + P T ++F + + L +L L +P+ M Q +RL L++F
Sbjct: 247 KDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ +IL+ TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDES-VLSLIKKRIDLAKSIEYL---ESKIKKNRPDN 1239
E+ YI++ + KK LP++P +E VLSL+ +R+ AK + + ES +K R ++
Sbjct: 367 YELEWYIQIEKLIGKK--LPEYPAEEDEVLSLL-ERVAEAKKLSAMNMKESGGRKRRGED 423
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 137/506 (27%), Positives = 216/506 (42%), Gaps = 152/506 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + E +++A + G+K P+KIQ+ +P AL KD++G A+TGSGKT AF IPIL
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEG-KDVIGLAQTGSGKTGAFAIPILQ 69
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ + + E G ++ +A +L+PTRELA
Sbjct: 70 ALLEYVYD----SEPKKG-----------------------RRPDPAFFACVLSPTRELA 102
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
IQ+ G ++ A +VGG+ +Q L K PH++VATPGRLW+ H++
Sbjct: 103 IQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWD-------HMS 155
Query: 333 E-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
+ L + YLV+DE DR++ L IL+ + +
Sbjct: 156 DTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLE-------------------- 195
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+TF+FSAT+T KKV ++LQ ++
Sbjct: 196 -------------RETFLFSATMT----------------KKV-------RKLQRAC-LR 218
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
+P ++ K TL + KD YL Y + + P T
Sbjct: 219 NPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPEST---------------- 262
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
+ T+T ++ L +L R+L F
Sbjct: 263 -----SMIFTRTCDGTRFLA-----------LVL----RSLGF----------------- 285
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+P+ M Q +RL L++F+ +IL+ TDVA+RGLDIP ++ VI+Y +P S+
Sbjct: 286 --RAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKD 343
Query: 628 YIHRSGRTARANNEGLTVVLIESDEI 653
YIHR GRTARA G+ + L+ E+
Sbjct: 344 YIHRVGRTARAGRSGVGISLVNQYEL 369
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ A +L+PTRELAIQ+ G ++ A +VGG+ +Q L K PH++VATPG
Sbjct: 89 AFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPG 148
Query: 1413 AL 1414
L
Sbjct: 149 RL 150
Score = 45.8 bits (107), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES-VLSLIKKR 1297
+++HR GRTARA G+ + L+ E+ YI++ + KK LP++P +E VLSL+ +R
Sbjct: 343 DYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKK--LPEYPAEEDEVLSLL-ER 399
Query: 1298 IDLAKSIEYL---ESKIKKNRPDN 1318
+ AK + + ES +K R ++
Sbjct: 400 VAEAKKLSAMNMKESGGRKRRGED 423
>gi|346318712|gb|EGX88314.1| ATP-dependent rRNA helicase RRP3 [Cordyceps militaris CM01]
Length = 480
Score = 226 bits (575), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 167/563 (29%), Positives = 277/563 (49%), Gaps = 107/563 (19%)
Query: 690 KKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSAN 749
K++K R + P VE E SA +++ +D+ E Q+D+ K++ + +T+
Sbjct: 5 KRRKASRDEPPKPVE-PEQSAPSSESEDESATVEAAQADD------KEEAEPPKTF---- 53
Query: 750 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
KEL +T +++ + + E ET+ G+KTPT IQ+ +P AL R D+
Sbjct: 54 KEL--ANTPHHQGIVDALCEAC-----ETL-------GYKTPTGIQAQSIPVALQGR-DV 98
Query: 810 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869
+G AETGSGKT AF +P+L +++K +
Sbjct: 99 IGLAETGSGKTAAFALPVLQALLDKPQ--------------------------------- 125
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
L+ L+LAPTRELA Q+ G ++ A +VGG+ Q L K PH+
Sbjct: 126 ------PLFGLVLAPTRELAAQIGQTFEALGALISLRCAVIVGGLDMVPQAVALGKKPHV 179
Query: 930 LVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 986
+VATPGRL + H T+ L + YLV+DE DR+++ ++ +L +
Sbjct: 180 IVATPGRLVD-----HLEKTKGFSLRTLKYLVLDEADRLLDMDFGESIEKLLKFI----- 229
Query: 987 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT-E 1045
+ R+T++FSAT++ S++ S++R +++ P V ++
Sbjct: 230 PRERRTYLFSATMSSSVE--------------------SLQRA----SLRDPVRVSVSAS 265
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSP 1104
K TL + + H KD+YL + I + G++ +VF ++ +R LL L
Sbjct: 266 KYQTVSTLKQHYVFIPHKRKDTYLIHIINEFAGKSCIVFTRTVYETQRCAVLLRTLGFGA 325
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
+PLH ++Q RL L++FR IL+ATDVAARGLDIP ++ +++Y +P S+ YIHR
Sbjct: 326 IPLHGQLSQSARLGALNKFRGGTREILVATDVAARGLDIPKVDVILNYDIPSDSKTYIHR 385
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
GRTARA G+ + ++ +I L+ ++ +L KK+D +F E + + R+ A+
Sbjct: 386 VGRTARAGKSGVAISIVTQFDIELFTRIEAALGKKLD--EFDTKEEEVMTFQSRVQEAQR 443
Query: 1225 IEYLE-SKIKKNRPDNWLHRSGR 1246
E + I ++R R GR
Sbjct: 444 HARNEMNNIMESRNKGATMRKGR 466
Score = 190 bits (482), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 169/636 (26%), Positives = 275/636 (43%), Gaps = 198/636 (31%)
Query: 73 KKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSAN 132
K++K R + P VE E SA +++ +D+ E Q+D+ K++ + +T+
Sbjct: 5 KRRKASRDEPPKPVE-PEQSAPSSESEDESATVEAAQADD------KEEAEPPKTF---- 53
Query: 133 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
KEL +T +++ + + E ET+ G+KTPT IQ+ +P AL R D+
Sbjct: 54 KEL--ANTPHHQGIVDALCEAC-----ETL-------GYKTPTGIQAQSIPVALQGR-DV 98
Query: 193 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252
+G AETGSGKT AF +P+L +++K +
Sbjct: 99 IGLAETGSGKTAAFALPVLQALLDKPQ--------------------------------- 125
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
L+ L+LAPTRELA Q+ G ++ A +VGG+ Q L K PH+
Sbjct: 126 ------PLFGLVLAPTRELAAQIGQTFEALGALISLRCAVIVGGLDMVPQAVALGKKPHV 179
Query: 313 LVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
+VATPGRL + H T+ L + YLV+DE DR+++ ++ +L +
Sbjct: 180 IVATPGRLVD-----HLEKTKGFSLRTLKYLVLDEADRLLDMDFGESIEKLLKFI----- 229
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 429
PR+ R+T++FSAT++ S++
Sbjct: 230 --PRE--------------------------RRTYLFSATMSSSVE-------------- 247
Query: 430 VSKGDPSIKRLQDLLNIKSPKIVDLT-EKIGITKTLTESKILCKHDEKDSYLYYFILQHP 488
S++R +++ P V ++ K TL + + H KD+YL + I +
Sbjct: 248 ------SLQR----ASLRDPVRVSVSASKYQTVSTLKQHYVFIPHKRKDTYLIHIINEFA 297
Query: 489 GRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
G++ C I T+T+ E+
Sbjct: 298 GKS-C--------------------IVFTRTVYET------------------------- 311
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608
+R LL L +PLH ++Q RL L++FR IL+ATDVAARGL
Sbjct: 312 ---------QRCAVLLRTLGFGAIPLHGQLSQSARLGALNKFRGGTREILVATDVAARGL 362
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK---------- 658
DIP ++ +++Y +P S+ YIHR GRTARA G+ + ++ +I L T+
Sbjct: 363 DIPKVDVILNYDIPSDSKTYIHRVGRTARAGKSGVAISIVTQFDIELFTRIEAALGKKLD 422
Query: 659 -FNLQEEENNEEEERA-EADKEKTEDINVTVSSKKK 692
F+ +EEE + R EA + ++N + S+ K
Sbjct: 423 EFDTKEEEVMTFQSRVQEAQRHARNEMNNIMESRNK 458
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G ++ A +VGG+ Q L K PH++VATPG L
Sbjct: 129 GLVLAPTRELAAQIGQTFEALGALISLRCAVIVGGLDMVPQAVALGKKPHVIVATPGRL 187
>gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS]
gi|118595828|sp|Q1E1N5.1|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3
gi|392870806|gb|EAS32639.2| ATP-dependent rRNA helicase RRP3 [Coccidioides immitis RS]
Length = 474
Score = 226 bits (575), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 146/465 (31%), Positives = 231/465 (49%), Gaps = 96/465 (20%)
Query: 746 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
T N E +E T+ + + I +++ A G+K PT+IQ+ +P AL
Sbjct: 35 TPGNDEKIEATTTKS---------FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQG 85
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
R D++G AETGSGKT AF +PIL +++K ++
Sbjct: 86 R-DLIGLAETGSGKTAAFALPILQALMDKPQS---------------------------- 116
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
++ L+LAPTRELA Q+ G V+ A +VGGM Q L K
Sbjct: 117 -----------MFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGK 165
Query: 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
PHI+VATPGRL + ++ + L + YLV+DE DR+++ P ILD++ +
Sbjct: 166 KPHIIVATPGRLLDHLE--NTKGFSLRSLKYLVMDEADRLLDLDFGP----ILDKI-LKV 218
Query: 986 TSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037
+ R+T++FSAT++ SL N L + +K + VS
Sbjct: 219 LPKERRTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVS----------------- 261
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQL 1096
TL ++ ++ H KD YL Y + + PG++ ++F +++ +RL L
Sbjct: 262 --------------TLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLAIL 307
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L L +PLH ++Q RL L +FR ++ +IL+ATDVAARGLDIP ++ V++Y +P
Sbjct: 308 LRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPS 367
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
S+ YIHR GRTARA G L+ ++ ++ ++ +L K++D
Sbjct: 368 DSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELD 412
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 161/591 (27%), Positives = 246/591 (41%), Gaps = 188/591 (31%)
Query: 129 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
T N E +E T+ + + I +++ A G+K PT+IQ+ +P AL
Sbjct: 35 TPGNDEKIEATTTKS---------FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQG 85
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
R D++G AETGSGKT AF +PIL +++K ++
Sbjct: 86 R-DLIGLAETGSGKTAAFALPILQALMDKPQS---------------------------- 116
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
++ L+LAPTRELA Q+ G V+ A +VGGM Q L K
Sbjct: 117 -----------MFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGK 165
Query: 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
PHI+VATPGRL + ++ + L + YLV+DE DR+++ P L IL +
Sbjct: 166 KPHIIVATPGRLLDHLE--NTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVL---- 219
Query: 369 TSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLKNSLNL 420
P++ R+T++FSAT++ SL N L +
Sbjct: 220 ---PKE--------------------------RRTYLFSATMSSKVESLQRASLSNPLRV 250
Query: 421 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480
+K + VS TL ++ ++ H KD YL
Sbjct: 251 SVSSNKYQTVS-------------------------------TLLQNCLIIPHKHKDIYL 279
Query: 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540
Y + + PG+++ I T+T+ E+
Sbjct: 280 IYLLNEFPGQSV---------------------IIFTRTVNET----------------- 301
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+RL LL L +PLH ++Q RL L +FR ++ +IL+A
Sbjct: 302 -----------------QRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVA 344
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660
TDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA G L+ T+++
Sbjct: 345 TDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLV--------TQYD 396
Query: 661 LQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSAN 711
++ + E E D+ K E V V S ++ Q + E+ EL N
Sbjct: 397 VEIWQRIEAALGKELDEYKVEKEEVMVLS--DRVGEAQRHAITEMKELHEN 445
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 116 SMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPG 175
Query: 1413 AL-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSREN 1467
L + K L +S++YL + D L+ D I+D + PK R
Sbjct: 176 RLLDHLENTKGFSL-RSLKYL----VMDEADRLLD---LDFGPILDKILKVLPK--ERRT 225
Query: 1468 ALMSKALVSKRKELQ 1482
L S + SK + LQ
Sbjct: 226 YLFSATMSSKVESLQ 240
>gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus]
Length = 435
Score = 226 bits (575), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 159/488 (32%), Positives = 247/488 (50%), Gaps = 81/488 (16%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M +W + +T+ Q + PTKIQ +P +L KD++G AETGSGKT AF +P
Sbjct: 1 MDDWKALGLVDTLCTTCIQLKWNEPTKIQREAIP-LVLEGKDVIGLAETGSGKTAAFALP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL + LENP + +ALIL PTR
Sbjct: 60 ILQAL---LENP------------------------------------QRYFALILTPTR 80
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA Q+ G VK A +VGGM Q +L K PHI++ATPGRL + L +
Sbjct: 81 ELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEKKPHIIIATPGRLVD--HLENT 138
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
L +I +L++DE DR++ E+ IL RV E R+T +FSAT+T
Sbjct: 139 KGFNLRQIKFLIMDEADRILNMDFEVEVNKIL-RVMPRE----RRTLLFSATMT------ 187
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
KKV K + ++++P V+++ K + L + I KD
Sbjct: 188 ----------KKVQKLQRA--------SLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKD 229
Query: 1067 SYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
YL + + + G ++FC + ++ R LL L + +PLH M+Q +R+ L +FR
Sbjct: 230 VYLVHILNELAGNNFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFRA 289
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+N SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ I +
Sbjct: 290 KNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFITQYD 349
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRS 1244
+ LY ++ + K+ LP +P +E + L+++R+ A+ I ++ K I++N+ +
Sbjct: 350 VELYQRIEQLISKQ--LPLYPTEEEEVMLLQERVSEAQRIVKMDMKNIEENK------KL 401
Query: 1245 GRTARANN 1252
G+ R +N
Sbjct: 402 GKRKRGSN 409
Score = 176 bits (446), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 146/506 (28%), Positives = 211/506 (41%), Gaps = 154/506 (30%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M +W + +T+ Q + PTKIQ +P +L KD++G AETGSGKT AF +P
Sbjct: 1 MDDWKALGLVDTLCTTCIQLKWNEPTKIQREAIP-LVLEGKDVIGLAETGSGKTAAFALP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL + LENP + +ALIL PTR
Sbjct: 60 ILQAL---LENP------------------------------------QRYFALILTPTR 80
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA Q+ G VK A +VGGM Q +L K PHI++ATPGRL + L +
Sbjct: 81 ELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEKKPHIIIATPGRLVD--HLENT 138
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
L +I +L++DE DR++ E+ IL RV PR+
Sbjct: 139 KGFNLRQIKFLIMDEADRILNMDFEVEVNKIL-RV------MPRE--------------- 176
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
R+T +FSAT+T KKV K + ++++P
Sbjct: 177 -----------RRTLLFSATMT----------------KKVQKLQRA--------SLRNP 201
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
V+++ K + L + I KD YL + + + G
Sbjct: 202 VKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNNFM---------------- 245
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
I C CN+ R LL L
Sbjct: 246 ---------------IFCGT---------------------CNNTV---RTALLLRNLGF 266
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+ +PLH M+Q +R+ L +FR +N SIL++TDVA+RGLDIP ++ VI++ +P S+ YI
Sbjct: 267 TAVPLHGQMSQNKRIAALTKFRAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYI 326
Query: 630 HRSGRTARANNEGLTVVLIESDEIPL 655
HR GRTARA G ++ I ++ L
Sbjct: 327 HRVGRTARAGRSGRSITFITQYDVEL 352
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 36/61 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ G VK A +VGGM Q +L K PHI++ATPG
Sbjct: 71 YFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEKKPHIIIATPGR 130
Query: 1414 L 1414
L
Sbjct: 131 L 131
Score = 43.5 bits (101), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ I ++ LY ++ + K+ LP +P +E + L+++R+
Sbjct: 324 DYIHRVGRTARAGRSGRSITFITQYDVELYQRIEQLISKQ--LPLYPTEEEEVMLLQERV 381
Query: 1299 DLAKSIEYLESK 1310
A+ I ++ K
Sbjct: 382 SEAQRIVKMDMK 393
>gi|297797047|ref|XP_002866408.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
lyrata]
gi|297312243|gb|EFH42667.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
lyrata]
Length = 455
Score = 226 bits (575), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 154/480 (32%), Positives = 245/480 (51%), Gaps = 77/480 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + E +++A + G+K P+KIQ+ +P AL KD++G A+TGSGKT AF IPIL
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEG-KDVIGLAQTGSGKTGAFAIPILQ 69
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ + + E G ++ +A +L+PTRELA
Sbjct: 70 ALLEYVYD----SEPKKG-----------------------RRPDPAFFACVLSPTRELA 102
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
IQ+ G ++ A +VGG+ +Q L K PH++VATPGRLW+ H++
Sbjct: 103 IQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWD-------HMS 155
Query: 950 E-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004
+ L + YLV+DE DR++ L IL+ E + R+TF+FSAT+T
Sbjct: 156 DTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE-----EIPRERKTFLFSATMT---- 206
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
KKV ++LQ +++P ++ K TL +
Sbjct: 207 ------------KKV-------RKLQRAC-LRNPVKIEAASKYSTVDTLKQQYRFVAAKY 246
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD YL Y + + P T ++F + + L +L L +P+ M Q +RL L++F
Sbjct: 247 KDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ +IL+ TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDES-VLSLIKKRIDLAKSIEYL---ESKIKKNRPDN 1239
E+ YI++ + KK LP++P +E VLSL+ +R+ AK + + ES +K R ++
Sbjct: 367 YELEWYIQIEKLIGKK--LPEYPAEEDEVLSLL-ERVAEAKKLSAMNMKESGGRKRRGED 423
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 139/506 (27%), Positives = 218/506 (43%), Gaps = 152/506 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + E +++A + G+K P+KIQ+ +P AL KD++G A+TGSGKT AF IPIL
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEG-KDVIGLAQTGSGKTGAFAIPILQ 69
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ + + E G ++ +A +L+PTRELA
Sbjct: 70 ALLEYVYD----SEPKKG-----------------------RRPDPAFFACVLSPTRELA 102
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
IQ+ G ++ A +VGG+ +Q L K PH++VATPGRLW+ H++
Sbjct: 103 IQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWD-------HMS 155
Query: 333 E-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
+ L + YLV+DE DR++ L IL+ + PR+
Sbjct: 156 DTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEI-------PRE------------- 195
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+TF+FSAT+T KKV ++LQ ++
Sbjct: 196 -------------RKTFLFSATMT----------------KKV-------RKLQRAC-LR 218
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
+P ++ K TL + KD YL Y + + P T
Sbjct: 219 NPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPEST---------------- 262
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
+ T+T ++ L +L R+L F
Sbjct: 263 -----SMIFTRTCDGTRFLA-----------LVL----RSLGF----------------- 285
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+P+ M Q +RL L++F+ +IL+ TDVA+RGLDIP ++ VI+Y +P S+
Sbjct: 286 --RAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKD 343
Query: 628 YIHRSGRTARANNEGLTVVLIESDEI 653
YIHR GRTARA G+ + L+ E+
Sbjct: 344 YIHRVGRTARAGRSGVGISLVNQYEL 369
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ A +L+PTRELAIQ+ G ++ A +VGG+ +Q L K PH++VATPG
Sbjct: 89 AFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPG 148
Query: 1413 AL 1414
L
Sbjct: 149 RL 150
Score = 45.8 bits (107), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES-VLSLIKKR 1297
+++HR GRTARA G+ + L+ E+ YI++ + KK LP++P +E VLSL+ +R
Sbjct: 343 DYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKK--LPEYPAEEDEVLSLL-ER 399
Query: 1298 IDLAKSIEYL---ESKIKKNRPDN 1318
+ AK + + ES +K R ++
Sbjct: 400 VAEAKKLSAMNMKESGGRKRRGED 423
>gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia]
gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia]
Length = 519
Score = 226 bits (575), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 239/464 (51%), Gaps = 76/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + E + +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 67 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 125
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LENP + +AL+L PTRELA
Sbjct: 126 AL---LENP------------------------------------QRYFALVLTPTRELA 146
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 147 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 206
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
I YLV+DE DR++ EL IL + + R+TF+FSAT+T
Sbjct: 207 K---AIKYLVMDEADRILNMDFEVELDKILKVL-----PRERRTFLFSATMT-------- 250
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K+LQ ++K P ++++ K + L +S + KD Y
Sbjct: 251 --------KKV-------KKLQRA-SLKDPVKIEVSNKYQTVEQLQQSYLFIPVKYKDVY 294
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC++ ++ + +L L + +PLH M+Q +RL L++F+ +N
Sbjct: 295 LVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKN 354
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + L+ +I
Sbjct: 355 RSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIE 414
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY ++ + L K++ L + +E + +++R+ A+ LE K
Sbjct: 415 LYQRIEHLLGKQLTL--YKCEEDEVMALQERVAEAQRTAKLELK 456
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 144/504 (28%), Positives = 219/504 (43%), Gaps = 156/504 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + E + +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 67 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 125
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LENP + +AL+L PTRELA
Sbjct: 126 AL---LENP------------------------------------QRYFALVLTPTRELA 146
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 147 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 206
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
I YLV+DE DR++ EL IL + PR+
Sbjct: 207 K---AIKYLVMDEADRILNMDFEVELDKILKVL-------PRE----------------- 239
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+TF+FSAT+T KKV K+LQ ++K P
Sbjct: 240 ---------RRTFLFSATMT----------------KKV-------KKLQR-ASLKDPVK 266
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
++++ K + L +S + KD YL + + + G
Sbjct: 267 IEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAG---------------------- 304
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+S++ + C++ ++ + +L L +
Sbjct: 305 ---------------------NSFMIF------------CSTCNNTVKTALMLRALGLAA 331
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR
Sbjct: 332 IPLHGQMSQNKRLAALNKFKTKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHR 391
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTARA G + L+ +I L
Sbjct: 392 VGRTARAGRSGKAITLVSQYDIEL 415
Score = 60.1 bits (144), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG L
Sbjct: 136 ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 195
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
++K +L K+I+YL + D L +MD ++ + +++ R L
Sbjct: 196 DHLENMKGFNL-KAIKYL----VMDEADRIL-----NMDFEVELDKILKVLPRERRTFLF 245
Query: 1471 SKALVSKRKELQ 1482
S + K K+LQ
Sbjct: 246 SATMTKKVKKLQ 257
>gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia malayi]
gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative
[Brugia malayi]
Length = 462
Score = 226 bits (575), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 154/487 (31%), Positives = 251/487 (51%), Gaps = 85/487 (17%)
Query: 756 DTSNNEDMFV--QMAE-------WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR 806
D+S++ED V Q+ E + K + + + A + +K PTK+Q +P A +
Sbjct: 3 DSSSDEDETVPTQLVEEQDDDITFQKLGVTDVLCEACDRLNWKKPTKVQIAALPHAF-KK 61
Query: 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866
+DI+G AETGSGKT AF IPIL + LE P
Sbjct: 62 RDIIGLAETGSGKTAAFAIPILQAL---LETP---------------------------- 90
Query: 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926
KL+AL+L PTRELA Q+ G + +A +VGG+ T Q L K
Sbjct: 91 --------QKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAKR 142
Query: 927 PHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
PH++VATPGRL + ++ F+L L YLV+DE DR++ EL+ IL +
Sbjct: 143 PHVIVATPGRLVDHLENTKGFNLRAL---KYLVMDEADRILNMDFEVELEKILKVI---- 195
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 1045
+ R+T+++SAT+T KKV+K + + ++ P ++++
Sbjct: 196 -PKERRTYLYSATMT----------------KKVAKLERA--------SLNDPVRIEVSS 230
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSP 1104
K L + I + K++YL Y + + G+T +VFC++ +S + +L L
Sbjct: 231 KYQTVDKLKQYYIFIPYKYKEAYLIYILNEMAGQTAIVFCSTCASALKTALMLRKLGFGA 290
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
+PLH M+Q +RL +L++F+ + +++L+ TDVA+RGLDIP ++ V++Y VP S+ Y+HR
Sbjct: 291 VPLHGQMSQAKRLGSLNKFKSKASTVLVCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHR 350
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
GRTARA G+ + + ++ +Y K+ + KK LP F E+ + L+ +R++ A+
Sbjct: 351 VGRTARAGRSGVAITFVTQYDVEIYQKIERLIGKK--LPLFETVENDVMLLVERVEEAQK 408
Query: 1225 IEYLESK 1231
+ E K
Sbjct: 409 LAKQEMK 415
Score = 178 bits (451), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 141/530 (26%), Positives = 230/530 (43%), Gaps = 165/530 (31%)
Query: 139 DTSNNEDMFV--QMAE-------WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR 189
D+S++ED V Q+ E + K + + + A + +K PTK+Q +P A +
Sbjct: 3 DSSSDEDETVPTQLVEEQDDDITFQKLGVTDVLCEACDRLNWKKPTKVQIAALPHAF-KK 61
Query: 190 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249
+DI+G AETGSGKT AF IPIL + LE P
Sbjct: 62 RDIIGLAETGSGKTAAFAIPILQAL---LETP---------------------------- 90
Query: 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309
KL+AL+L PTRELA Q+ G + +A +VGG+ T Q L K
Sbjct: 91 --------QKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAKR 142
Query: 310 PHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
PH++VATPGRL + ++ F+L L YLV+DE DR++ EL+ IL +
Sbjct: 143 PHVIVATPGRLVDHLENTKGFNLRAL---KYLVMDEADRILNMDFEVELEKILKVI---- 195
Query: 369 TSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSK 428
P++ R+T+++SAT+T K
Sbjct: 196 ---PKE--------------------------RRTYLYSATMT----------------K 210
Query: 429 KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 488
KV+K + + ++ P ++++ K L + I + K++YL Y + +
Sbjct: 211 KVAKLERA--------SLNDPVRIEVSSKYQTVDKLKQYYIFIPYKYKEAYLIYILNEMA 262
Query: 489 GRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
G+T + + C
Sbjct: 263 GQT-------------------------------AIVFC--------------------- 270
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608
++ +S + +L L +PLH M+Q +RL +L++F+ + +++L+ TDVA+RGL
Sbjct: 271 ---STCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKASTVLVCTDVASRGL 327
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK 658
DIP ++ V++Y VP S+ Y+HR GRTARA G+ + + ++ + K
Sbjct: 328 DIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAITFVTQYDVEIYQK 377
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G + +A +VGG+ T Q L K PH++VATPG L
Sbjct: 95 ALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAKRPHVIVATPGRL 153
>gi|281207739|gb|EFA81919.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 932
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/271 (45%), Positives = 169/271 (62%), Gaps = 16/271 (5%)
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR-----LQDLLN----IK 1036
+S RQTF+FSATL N+ + + KK G+ K+ LQ+L+ +
Sbjct: 582 SSFKRQTFIFSATLV----GIPNINELNNDGKKPMGGNRKFKKKAASPLQELIGKVQFQR 637
Query: 1037 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 1096
+++D T+ + L E+KI+C +E+D +LYYF+ ++PGRTLVF NSI S +RL +
Sbjct: 638 RYRLIDCTKSKLTARNLEETKIVCSVEERDMFLYYFVDRYPGRTLVFVNSIDSARRLLPI 697
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L LK LHA M QRQRLKNLDRFR+ + +LLATDVAARGLDI ++HVIH+ VPR
Sbjct: 698 LNNLKVPIFTLHAQMQQRQRLKNLDRFRNMEHVVLLATDVAARGLDIQNVQHVIHFQVPR 757
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1216
+ E+YIHRSGRTAR+ EG +LV++ E LY K+ SLE ++ P FPID L IK
Sbjct: 758 SLELYIHRSGRTARSKREGFSLVMVTPKENDLYNKLARSLEHEI--PTFPIDLKYLDAIK 815
Query: 1217 KRIDLAKSIEYLESKIKK-NRPDNWLHRSGR 1246
R++LA I+ L + KK N NW + R
Sbjct: 816 TRVELAIQIDKLTHQTKKENAEKNWFMNTAR 846
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 153/247 (61%), Gaps = 9/247 (3%)
Query: 119 KQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQ 178
K +K KK++ S K L E +E V ++ W ++++ +++ L G+ PT+IQ
Sbjct: 285 KNEKFKKRSEQSLQKFLKE-----DEQEKVDISAWNQYDLDPLLVKGLKALGYGEPTEIQ 339
Query: 179 SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE---NPTE-EDENDSGLEEE 234
S V+P+AL DI+GAAETGSGKTLAFGIP+L I+ L +P E ++ N G +
Sbjct: 340 SQVIPAALKNGLDIIGAAETGSGKTLAFGIPMLHNILTYLRSINHPVEKQNINVDGKMKP 399
Query: 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 294
E +E EEE E + + LY+LI+ PTRELAIQV NH+ +T + V VV
Sbjct: 400 LVEQDDEEEEEEEEEEETATRKQGHLYSLIMCPTRELAIQVANHLKSISYFTTISVVTVV 459
Query: 295 GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 354
GGM+ +KQ+R+L + P I+VATPGRLWE IQ G+ HL +L + IDE DRM+E GHF
Sbjct: 460 GGMAAQKQIRLLGRRPEIVVATPGRLWELIQDGNEHLLDLTHLMCFGIDEADRMVEKGHF 519
Query: 355 PELKNIL 361
E+ +IL
Sbjct: 520 AEVDSIL 526
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 153/247 (61%), Gaps = 9/247 (3%)
Query: 736 KQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQ 795
K +K KK++ S K L E +E V ++ W ++++ +++ L G+ PT+IQ
Sbjct: 285 KNEKFKKRSEQSLQKFLKE-----DEQEKVDISAWNQYDLDPLLVKGLKALGYGEPTEIQ 339
Query: 796 SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE---NPTE-EDENDSGLEEE 851
S V+P+AL DI+GAAETGSGKTLAFGIP+L I+ L +P E ++ N G +
Sbjct: 340 SQVIPAALKNGLDIIGAAETGSGKTLAFGIPMLHNILTYLRSINHPVEKQNINVDGKMKP 399
Query: 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 911
E +E EEE E + + LY+LI+ PTRELAIQV NH+ +T + V VV
Sbjct: 400 LVEQDDEEEEEEEEEEETATRKQGHLYSLIMCPTRELAIQVANHLKSISYFTTISVVTVV 459
Query: 912 GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 971
GGM+ +KQ+R+L + P I+VATPGRLWE IQ G+ HL +L + IDE DRM+E GHF
Sbjct: 460 GGMAAQKQIRLLGRRPEIVVATPGRLWELIQDGNEHLLDLTHLMCFGIDEADRMVEKGHF 519
Query: 972 PELKNIL 978
E+ +IL
Sbjct: 520 AEVDSIL 526
Score = 180 bits (456), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 110/154 (71%)
Query: 506 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 565
+++D T+ + L E+KI+C +E+D +LYYF+ ++PGRTLVF NSI S +RL +L
Sbjct: 640 RLIDCTKSKLTARNLEETKIVCSVEERDMFLYYFVDRYPGRTLVFVNSIDSARRLLPILN 699
Query: 566 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625
LK LHA M QRQRLKNLDRFR+ + +LLATDVAARGLDI ++HVIH+ VPR+
Sbjct: 700 NLKVPIFTLHAQMQQRQRLKNLDRFRNMEHVVLLATDVAARGLDIQNVQHVIHFQVPRSL 759
Query: 626 EIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659
E+YIHRSGRTAR+ EG ++V++ E L K
Sbjct: 760 ELYIHRSGRTARSKREGFSLVMVTPKENDLYNKL 793
Score = 81.3 bits (199), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTAR+ EG +LV++ E LY K+ SLE ++ P FPID L IK R++
Sbjct: 762 YIHRSGRTARSKREGFSLVMVTPKENDLYNKLARSLEHEI--PTFPIDLKYLDAIKTRVE 819
Query: 1300 LAKSIEYLESKIKK-NRPDNWLEKAAKDMDIIIDDE 1334
LA I+ L + KK N NW A++MDI +DD+
Sbjct: 820 LAIQIDKLTHQTKKENAEKNWFMNTAREMDIALDDD 855
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+LI+ PTRELAIQV NH+ +T + V VVGGM+ +KQ+R+L + P I+VATPG L
Sbjct: 427 SLIMCPTRELAIQVANHLKSISYFTTISVVTVVGGMAAQKQIRLLGRRPEIVVATPGRL 485
>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
Length = 451
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 155/466 (33%), Positives = 237/466 (50%), Gaps = 76/466 (16%)
Query: 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
A W + + + +A Q + P+KIQ +P AL KD++G AETGSGKT AF +PI
Sbjct: 19 ATWSDLGLVDVLCKACEQLKWAQPSKIQKEAIPVALQG-KDVIGLAETGSGKTAAFALPI 77
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L + LENP + +ALIL PTRE
Sbjct: 78 LQSL---LENP------------------------------------QRYFALILTPTRE 98
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHF 946
LA Q+ I G VK A +VGGM Q IL K PHIL+ATPGRL + ++ F
Sbjct: 99 LAFQISEQIEALGANIGVKCAVIVGGMDMMSQALILAKKPHILIATPGRLLDHLENTKGF 158
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
+L L YLV+DE DR++ E+ IL + + R TF+FSAT+T
Sbjct: 159 NLKAL---KYLVMDEADRILNMDFEVEVDKILKVI-----PRERHTFLFSATMT------ 204
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
KKV K+LQ ++ P V+++ K + L + I KD
Sbjct: 205 ----------KKV-------KKLQRAC-LRDPVKVEVSTKYQTVEKLQQYYIFIPVKFKD 246
Query: 1067 SYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
YL + + + G + ++FC++ ++ R LL L + +PLH M+Q +RL L +F+
Sbjct: 247 VYLVHILNEMAGNSFMIFCSTCNNTIRTALLLRNLGLTAVPLHGQMSQNKRLAALTKFKA 306
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+N SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G + + +
Sbjct: 307 KNRSILISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYD 366
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ LY ++ + K+ LP + +E + ++++R+ ++ + +E K
Sbjct: 367 VELYQRIEQLIGKQ--LPLYKTEEDEVMVLQERVAESQRLAKMEMK 410
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 151/506 (29%), Positives = 212/506 (41%), Gaps = 156/506 (30%)
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
A W + + + +A Q + P+KIQ +P AL KD++G AETGSGKT AF +PI
Sbjct: 19 ATWSDLGLVDVLCKACEQLKWAQPSKIQKEAIPVALQG-KDVIGLAETGSGKTAAFALPI 77
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L + LENP + +ALIL PTRE
Sbjct: 78 LQSL---LENP------------------------------------QRYFALILTPTRE 98
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHF 329
LA Q+ I G VK A +VGGM Q IL K PHIL+ATPGRL + ++ F
Sbjct: 99 LAFQISEQIEALGANIGVKCAVIVGGMDMMSQALILAKKPHILIATPGRLLDHLENTKGF 158
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+L L YLV+DE DR++ E+ IL + PR+
Sbjct: 159 NLKAL---KYLVMDEADRILNMDFEVEVDKILKVI-------PRE--------------- 193
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
R TF+FSAT+T KKV K+LQ ++ P
Sbjct: 194 -----------RHTFLFSATMT----------------KKV-------KKLQRAC-LRDP 218
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
V+++ K + L + I KD YL + + + G +
Sbjct: 219 VKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNEMAGNSFM---------------- 262
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
I C CN + R LL L
Sbjct: 263 ---------------IFCST---------------------CN---NTIRTALLLRNLGL 283
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+ +PLH M+Q +RL L +F+ +N SIL++TDVA+RGLDIP ++ VI++ +P S+ YI
Sbjct: 284 TAVPLHGQMSQNKRLAALTKFKAKNRSILISTDVASRGLDIPHVDVVINFDIPTHSKDYI 343
Query: 630 HRSGRTARANNEGLTVVLIESDEIPL 655
HR GRTARA G + + ++ L
Sbjct: 344 HRVGRTARAGRSGKAITFVTQYDVEL 369
Score = 66.6 bits (161), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ I G VK A +VGGM Q IL K PHIL+ATPG
Sbjct: 88 YFALILTPTRELAFQISEQIEALGANIGVKCAVIVGGMDMMSQALILAKKPHILIATPGR 147
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
L + K +L K+++YL + D L +MD ++ + +++ R
Sbjct: 148 LLDHLENTKGFNL-KALKYLVM----DEADRIL-----NMDFEVEVDKILKVIPRERHTF 197
Query: 1469 LMSKALVSKRKELQ 1482
L S + K K+LQ
Sbjct: 198 LFSATMTKKVKKLQ 211
>gi|380013608|ref|XP_003690844.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Apis
florea]
Length = 452
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 157/464 (33%), Positives = 236/464 (50%), Gaps = 76/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W I + + +A +K+PTKIQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 20 WKDLGIVDILHKACEDLKWKSPTKIQCEAIPLALEG-KDIIGLAETGSGKTAAFALPILQ 78
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LENP + +ALIL PTRELA
Sbjct: 79 AL---LENP------------------------------------QRYFALILTPTRELA 99
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G VK A +VGGM Q IL K PHIL+ATPGRL + ++ F L
Sbjct: 100 FQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPHILIATPGRLVDHLENTKGFSL 159
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L +LV+DE DR++ E+ IL RV E R+T +FSAT+T
Sbjct: 160 RSL---KFLVMDEADRILNMDFEVEVDKIL-RVIPRE----RKTLLFSATMT-------- 203
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K + ++++P V+++ K + L + I KD Y
Sbjct: 204 --------KKVQKLQRA--------SLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVY 247
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC + ++ R LL L + +PLH M+Q +R+ L +F+ +N
Sbjct: 248 LVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKN 307
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++
Sbjct: 308 RSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVE 367
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY ++ + K+ LP +P E + ++++R+ A+ I +E K
Sbjct: 368 LYQRIEQLISKQ--LPLYPTQEEEVMVLEERVAEARRIVKMEMK 409
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 162/560 (28%), Positives = 238/560 (42%), Gaps = 169/560 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W I + + +A +K+PTKIQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 20 WKDLGIVDILHKACEDLKWKSPTKIQCEAIPLALEG-KDIIGLAETGSGKTAAFALPILQ 78
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LENP + +ALIL PTRELA
Sbjct: 79 AL---LENP------------------------------------QRYFALILTPTRELA 99
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G VK A +VGGM Q IL K PHIL+ATPGRL + ++ F L
Sbjct: 100 FQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPHILIATPGRLVDHLENTKGFSL 159
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L +LV+DE DR++ E+ IL + PR+
Sbjct: 160 RSL---KFLVMDEADRILNMDFEVEVDKILRVI-------PRE----------------- 192
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+T +FSAT+T KKV K + ++++P
Sbjct: 193 ---------RKTLLFSATMT----------------KKVQKLQRA--------SLRNPVK 219
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K + L + I KD YL + + + G
Sbjct: 220 VEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAG---------------------- 257
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+S++ + C + ++ R LL L +
Sbjct: 258 ---------------------NSFMIF------------CATCNNTVRTALLLRNLGFTA 284
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +R+ L +F+ +N SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR
Sbjct: 285 VPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHR 344
Query: 632 SGRTARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEADK-E 678
GRTARA G ++ + ++ L + + QEEE EER AEA +
Sbjct: 345 VGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQLPLYPTQEEEVMVLEERVAEARRIV 404
Query: 679 KTEDINVTVSSKKKKLKRKQ 698
K E ++ S K K K++Q
Sbjct: 405 KMEMKDIEDSKKIGKRKKRQ 424
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 36/61 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ G VK A +VGGM Q IL K PHIL+ATPG
Sbjct: 87 YFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPHILIATPGR 146
Query: 1414 L 1414
L
Sbjct: 147 L 147
Score = 42.4 bits (98), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ LY ++ + K+ LP +P E + ++++R+
Sbjct: 340 DYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQ--LPLYPTQEEEVMVLEERV 397
Query: 1299 DLAKSIEYLESK 1310
A+ I +E K
Sbjct: 398 AEARRIVKMEMK 409
>gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108869558|gb|EAT33783.1| AAEL013950-PA [Aedes aegypti]
Length = 495
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 151/475 (31%), Positives = 238/475 (50%), Gaps = 74/475 (15%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
+ N D + A W + +T+ A +K P+KIQ +P AL KD++G AETGS
Sbjct: 47 NGNADSEEKQASWEDMGLIDTLCEACRALKWKAPSKIQREAIPLALQG-KDVIGLAETGS 105
Query: 818 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 877
GKT AF +PIL + LENP +
Sbjct: 106 GKTGAFALPILQAL---LENP------------------------------------QRY 126
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
+A+IL PTRELA Q+ G +K +VGGM Q L + PHI++ATPGRL
Sbjct: 127 FAVILTPTRELAYQISEQFEALGASIGIKCCVIVGGMDMVSQALHLARKPHIIIATPGRL 186
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+ ++ + L + YLV+DE DR++ EL+ IL + + R+TF+FSA
Sbjct: 187 VDHLE--NTKGFNLKAVKYLVMDEADRILNLDFEVELEKILKVI-----PRERRTFLFSA 239
Query: 998 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 1057
T+T KKV K + + ++K P V+++ K + L +
Sbjct: 240 TMT----------------KKVKKLERA--------SLKDPVKVEVSSKYQTVEKLLQYY 275
Query: 1058 ILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
I KD YL + + + G + ++FC++ ++ R +L L + +PLH M+Q +R
Sbjct: 276 IFIPAKYKDVYLVHILNELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKR 335
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
L L++F+ +N IL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G
Sbjct: 336 LAALNKFKGKNRQILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGK 395
Query: 1177 TLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ + ++ LY ++ + L KK LP F +E + +++R+ A+ LE K
Sbjct: 396 AVTFVTQYDVELYQRIEHLLGKK--LPQFKCEEDEVMALQERVGEAQRTARLELK 448
Score = 180 bits (457), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 154/568 (27%), Positives = 239/568 (42%), Gaps = 169/568 (29%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
+ N D + A W + +T+ A +K P+KIQ +P AL KD++G AETGS
Sbjct: 47 NGNADSEEKQASWEDMGLIDTLCEACRALKWKAPSKIQREAIPLALQG-KDVIGLAETGS 105
Query: 201 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 260
GKT AF +PIL + LENP +
Sbjct: 106 GKTGAFALPILQAL---LENP------------------------------------QRY 126
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
+A+IL PTRELA Q+ G +K +VGGM Q L + PHI++ATPGRL
Sbjct: 127 FAVILTPTRELAYQISEQFEALGASIGIKCCVIVGGMDMVSQALHLARKPHIIIATPGRL 186
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
+ ++ + L + YLV+DE DR++ EL+ IL + PR+
Sbjct: 187 VDHLE--NTKGFNLKAVKYLVMDEADRILNLDFEVELEKILKVI-------PRE------ 231
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
R+TF+FSAT+T KKV K + +
Sbjct: 232 --------------------RRTFLFSATMT----------------KKVKKLERA---- 251
Query: 441 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500
++K P V+++ K + L + I KD YL + + + G
Sbjct: 252 ----SLKDPVKVEVSSKYQTVEKLLQYYIFIPAKYKDVYLVHILNELAG----------- 296
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 560
+S++ + C++ ++ R
Sbjct: 297 --------------------------------NSFMIF------------CSTCNNTVRT 312
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+L L + +PLH M+Q +RL L++F+ +N IL++TDVA+RGLDIP ++ V+++
Sbjct: 313 ALMLRALGLAAVPLHGQMSQNKRLAALNKFKGKNRQILISTDVASRGLDIPHVDVVLNFD 372
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEE 669
+P S+ YIHR GRTARA G V + ++ L + F +E+E
Sbjct: 373 IPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEHLLGKKLPQFKCEEDEVMAL 432
Query: 670 EER-AEADKE---KTEDINVTVSSKKKK 693
+ER EA + + +DI+ SK KK
Sbjct: 433 QERVGEAQRTARLELKDIDDRKGSKGKK 460
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A+IL PTRELA Q+ G +K +VGGM Q L + PHI++ATPG
Sbjct: 126 YFAVILTPTRELAYQISEQFEALGASIGIKCCVIVGGMDMVSQALHLARKPHIIIATPGR 185
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
L + K +L K+++YL + D L ++D ++ E +++ R
Sbjct: 186 LVDHLENTKGFNL-KAVKYL----VMDEADRIL-----NLDFEVELEKILKVIPRERRTF 235
Query: 1469 LMSKALVSKRKELQ 1482
L S + K K+L+
Sbjct: 236 LFSATMTKKVKKLE 249
Score = 42.0 bits (97), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ LY ++ + L KK LP F +E + +++R+
Sbjct: 379 DYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEHLLGKK--LPQFKCEEDEVMALQERV 436
Query: 1299 DLAKSIEYLESK 1310
A+ LE K
Sbjct: 437 GEAQRTARLELK 448
>gi|18424420|ref|NP_568931.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
gi|108861883|sp|Q8GY84.2|RH10_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 10
gi|10177322|dbj|BAB10648.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|332010025|gb|AED97408.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
Length = 456
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 153/480 (31%), Positives = 245/480 (51%), Gaps = 77/480 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + E +++A + G+K P+KIQ+ +P AL KD++G A+TGSGKT AF IPIL
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEG-KDVIGLAQTGSGKTGAFAIPILQ 69
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ + + E G ++ +A +L+PTRELA
Sbjct: 70 ALLEYVYD----SEPKKG-----------------------RRPDPAFFACVLSPTRELA 102
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
IQ+ G ++ A +VGG+ +Q L K PH++VATPGRLW+ H++
Sbjct: 103 IQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWD-------HMS 155
Query: 950 E-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004
+ L + YLV+DE DR++ L IL+ + + R+TF+FSAT+T
Sbjct: 156 DTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLE-----RKTFLFSATMT---- 206
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
KKV ++LQ +++P ++ K TL +
Sbjct: 207 ------------KKV-------RKLQRAC-LRNPVKIEAASKYSTVDTLKQQYRFVAAKY 246
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD YL Y + + P T ++F + + L +L L +P+ M Q +RL L++F
Sbjct: 247 KDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ +IL+ TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDES-VLSLIKKRIDLAKSIEYL---ESKIKKNRPDN 1239
E+ YI++ + KK LP++P +E VLSL+ +R+ AK + + ES +K R ++
Sbjct: 367 YELEWYIQIEKLIGKK--LPEYPAEEDEVLSLL-ERVAEAKKLSAMNMKESGGRKRRGED 423
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 137/506 (27%), Positives = 216/506 (42%), Gaps = 152/506 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + E +++A + G+K P+KIQ+ +P AL KD++G A+TGSGKT AF IPIL
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEG-KDVIGLAQTGSGKTGAFAIPILQ 69
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ + + E G ++ +A +L+PTRELA
Sbjct: 70 ALLEYVYD----SEPKKG-----------------------RRPDPAFFACVLSPTRELA 102
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
IQ+ G ++ A +VGG+ +Q L K PH++VATPGRLW+ H++
Sbjct: 103 IQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWD-------HMS 155
Query: 333 E-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
+ L + YLV+DE DR++ L IL+ + +
Sbjct: 156 DTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLE-------------------- 195
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+TF+FSAT+T KKV ++LQ ++
Sbjct: 196 -------------RKTFLFSATMT----------------KKV-------RKLQRAC-LR 218
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
+P ++ K TL + KD YL Y + + P T
Sbjct: 219 NPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPEST---------------- 262
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
+ T+T ++ L +L R+L F
Sbjct: 263 -----SMIFTRTCDGTRFLA-----------LVL----RSLGF----------------- 285
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+P+ M Q +RL L++F+ +IL+ TDVA+RGLDIP ++ VI+Y +P S+
Sbjct: 286 --RAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKD 343
Query: 628 YIHRSGRTARANNEGLTVVLIESDEI 653
YIHR GRTARA G+ + L+ E+
Sbjct: 344 YIHRVGRTARAGRSGVGISLVNQYEL 369
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ A +L+PTRELAIQ+ G ++ A +VGG+ +Q L K PH++VATPG
Sbjct: 89 AFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPG 148
Query: 1413 AL 1414
L
Sbjct: 149 RL 150
Score = 45.8 bits (107), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES-VLSLIKKR 1297
+++HR GRTARA G+ + L+ E+ YI++ + KK LP++P +E VLSL+ +R
Sbjct: 343 DYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKK--LPEYPAEEDEVLSLL-ER 399
Query: 1298 IDLAKSIEYL---ESKIKKNRPDN 1318
+ AK + + ES +K R ++
Sbjct: 400 VAEAKKLSAMNMKESGGRKRRGED 423
>gi|366994708|ref|XP_003677118.1| hypothetical protein NCAS_0F02790 [Naumovozyma castellii CBS 4309]
gi|342302986|emb|CCC70763.1| hypothetical protein NCAS_0F02790 [Naumovozyma castellii CBS 4309]
Length = 502
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 239/476 (50%), Gaps = 76/476 (15%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+PE +++A + PT IQS +P AL DI+G A+TGSGKT AF IPIL + +
Sbjct: 90 VPE-LLQACKNLNYTKPTPIQSRSIPPALKG-NDIIGLAQTGSGKTAAFAIPILNSLWHD 147
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+ P YA ILAPTRELA Q++
Sbjct: 148 -QQP--------------------------------------YYACILAPTRELAQQIKE 168
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ + L K+
Sbjct: 169 TFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGFSLRKL 226
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
YLV+DE DR+++ P +LDR+ +Q R T++FSAT+T S
Sbjct: 227 KYLVMDEADRLLDMEFGP----VLDRILKILPTQGRTTYLFSATMT-------------S 269
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K+ + ++ +P ++ K TL ++ I+ KD+YL Y +
Sbjct: 270 KIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKDTYLVYLLN 318
Query: 1075 QHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+ G+T ++F + ++ +R++ L +L+ + LH +NQ QR LD F+ SIL+A
Sbjct: 319 EFIGKTTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRKSILVA 378
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L +++
Sbjct: 379 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 438
Query: 1194 NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTAR 1249
L KK LP +D+ ++ + +D A +E + + + L GR R
Sbjct: 439 EVLGKK--LPKESVDKEMILHFRDSVDKANGEVIME--MNRRNKEKQLRGKGRRGR 490
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 144/498 (28%), Positives = 211/498 (42%), Gaps = 154/498 (30%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+PE +++A + PT IQS +P AL DI+G A+TGSGKT AF IPIL + +
Sbjct: 90 VPE-LLQACKNLNYTKPTPIQSRSIPPALKG-NDIIGLAQTGSGKTAAFAIPILNSLWHD 147
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+ P YA ILAPTRELA Q++
Sbjct: 148 -QQP--------------------------------------YYACILAPTRELAQQIKE 168
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ + L K+
Sbjct: 169 TFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGFSLRKL 226
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
YLV+DE DR+++ P +LDR+
Sbjct: 227 KYLVMDEADRLLDMEFGP--------------------------------VLDRILKILP 254
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
+Q R T++FSAT+T SK K+ + ++ +P ++ K
Sbjct: 255 TQGRTTYLFSATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNK 290
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
TL ++ I+ KD+YL Y + + G+T I T
Sbjct: 291 YQTVDTLVQTLIVVPGGLKDTYLVYLLNEFIGKT---------------------TIIFT 329
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+T ++ R CN +L+ + LH
Sbjct: 330 RTKANAE---------------------RISGLCN-------------LLEFNATALHGD 355
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+NQ QR LD F+ SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTAR
Sbjct: 356 LNQNQRTGALDLFKAGRKSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTAR 415
Query: 638 ANNEGLTVVLIESDEIPL 655
A G ++ L+ ++ L
Sbjct: 416 AGRSGKSISLVSQYDLEL 433
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 151 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGR 210
Query: 1414 L 1414
L
Sbjct: 211 L 211
>gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 474
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 146/465 (31%), Positives = 231/465 (49%), Gaps = 96/465 (20%)
Query: 746 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
T N E +E T+ + + I +++ A G+K PT+IQ+ +P AL
Sbjct: 35 TPGNDEKIEATTTKS---------FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQG 85
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
R D++G AETGSGKT AF +PIL +++K ++
Sbjct: 86 R-DLIGLAETGSGKTAAFALPILQALMDKPQS---------------------------- 116
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
++ L+LAPTRELA Q+ G V+ A +VGGM Q L K
Sbjct: 117 -----------MFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGK 165
Query: 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
PHI+VATPGRL + ++ + L + YLV+DE DR+++ P ILD++ +
Sbjct: 166 KPHIIVATPGRLLDHLE--NTKGFSLRSLKYLVMDEADRLLDLDFGP----ILDKI-LKV 218
Query: 986 TSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037
+ R+T++FSAT++ SL N L + +K + VS
Sbjct: 219 LPKERRTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVS----------------- 261
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQL 1096
TL ++ ++ H KD YL Y + + PG++ ++F +++ +RL L
Sbjct: 262 --------------TLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLAIL 307
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L L +PLH ++Q RL L +FR ++ +IL+ATDVAARGLDIP ++ V++Y +P
Sbjct: 308 LRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPS 367
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
S+ YIHR GRTARA G L+ ++ ++ ++ +L K++D
Sbjct: 368 DSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELD 412
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 161/591 (27%), Positives = 246/591 (41%), Gaps = 188/591 (31%)
Query: 129 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
T N E +E T+ + + I +++ A G+K PT+IQ+ +P AL
Sbjct: 35 TPGNDEKIEATTTKS---------FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQG 85
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
R D++G AETGSGKT AF +PIL +++K ++
Sbjct: 86 R-DLIGLAETGSGKTAAFALPILQALMDKPQS---------------------------- 116
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
++ L+LAPTRELA Q+ G V+ A +VGGM Q L K
Sbjct: 117 -----------MFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGK 165
Query: 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
PHI+VATPGRL + ++ + L + YLV+DE DR+++ P L IL +
Sbjct: 166 KPHIIVATPGRLLDHLE--NTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVL---- 219
Query: 369 TSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLKNSLNL 420
P++ R+T++FSAT++ SL N L +
Sbjct: 220 ---PKE--------------------------RRTYLFSATMSSKVESLQRASLSNPLRV 250
Query: 421 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480
+K + VS TL ++ ++ H KD YL
Sbjct: 251 SVSSNKYQTVS-------------------------------TLLQNCLIIPHKHKDIYL 279
Query: 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540
Y + + PG+++ I T+T+ E+
Sbjct: 280 IYLLNEFPGQSV---------------------IIFTRTVNET----------------- 301
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+RL LL L +PLH ++Q RL L +FR ++ +IL+A
Sbjct: 302 -----------------QRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVA 344
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660
TDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA G L+ T+++
Sbjct: 345 TDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLV--------TQYD 396
Query: 661 LQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSAN 711
++ + E E D+ K E V V S ++ Q + E+ EL N
Sbjct: 397 VEIWQRIEAALGKELDEYKVEKEEVMVLS--DRVGEAQRHAITEMKELHEN 445
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 116 SMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPG 175
Query: 1413 AL-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSREN 1467
L + K L +S++YL + D L+ D I+D + PK R
Sbjct: 176 RLLDHLENTKGFSL-RSLKYL----VMDEADRLLD---LDFGPILDKILKVLPK--ERRT 225
Query: 1468 ALMSKALVSKRKELQ 1482
L S + SK + LQ
Sbjct: 226 YLFSATMSSKVESLQ 240
>gi|383854018|ref|XP_003702519.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Megachile rotundata]
Length = 453
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 159/470 (33%), Positives = 243/470 (51%), Gaps = 77/470 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W I + + +A +K+PTKIQ +P L KDI+G AETGSGKT AF +PIL
Sbjct: 20 WKDLGIVDVLCKACEDLKWKSPTKIQRESIPLTLQG-KDIIGLAETGSGKTAAFALPILQ 78
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LENP + +ALIL PTRELA
Sbjct: 79 AL---LENP------------------------------------QRYFALILTPTRELA 99
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G VK A +VGGM Q IL K PHIL+ATPGRL + ++ F+L
Sbjct: 100 FQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPHILIATPGRLIDHLENTKGFNL 159
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L +LV+DE DR++ E+ IL RV E R+T +FSAT+T
Sbjct: 160 RSL---KFLVMDEADRILNMDFEVEVDKIL-RVIPRE----RRTLLFSATMT-------- 203
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K ++R ++++P V+++ K + L + I KD Y
Sbjct: 204 --------KKVQK----LQRA----SLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVY 247
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC + ++ R LL L + +PLH M+Q +R+ L +F+ +N
Sbjct: 248 LVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKN 307
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++
Sbjct: 308 RSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVE 367
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNR 1236
LY ++ + K+ LP +P E + ++++R+ A+ I +E K I++N+
Sbjct: 368 LYQRIEQLISKQ--LPLYPTQEEEVMVLQERVAEAQRIVKMELKDIEENK 415
Score = 181 bits (458), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 162/557 (29%), Positives = 238/557 (42%), Gaps = 171/557 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W I + + +A +K+PTKIQ +P L KDI+G AETGSGKT AF +PIL
Sbjct: 20 WKDLGIVDVLCKACEDLKWKSPTKIQRESIPLTLQG-KDIIGLAETGSGKTAAFALPILQ 78
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LENP + +ALIL PTRELA
Sbjct: 79 AL---LENP------------------------------------QRYFALILTPTRELA 99
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G VK A +VGGM Q IL K PHIL+ATPGRL + ++ F+L
Sbjct: 100 FQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPHILIATPGRLIDHLENTKGFNL 159
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L +LV+DE DR++ E+ IL RV PR+
Sbjct: 160 RSL---KFLVMDEADRILNMDFEVEVDKIL-RVI------PRE----------------- 192
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+T +FSAT+T KKV K ++R ++++P
Sbjct: 193 ---------RRTLLFSATMT----------------KKVQK----LQR----ASLRNPVK 219
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K + L + I KD YL + + + G
Sbjct: 220 VEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAG---------------------- 257
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+S++ + C + ++ R LL L +
Sbjct: 258 ---------------------NSFMIF------------CATCNNTVRTALLLRNLGFTA 284
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +R+ L +F+ +N SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR
Sbjct: 285 VPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHR 344
Query: 632 SGRTARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEAD--- 676
GRTARA G ++ + ++ L + + QEEE +ER AEA
Sbjct: 345 VGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQLPLYPTQEEEVMVLQERVAEAQRIV 404
Query: 677 KEKTEDINVTVSSKKKK 693
K + +DI S K+K
Sbjct: 405 KMELKDIEENKKSGKRK 421
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ G VK A +VGGM Q IL K PHIL+ATPG
Sbjct: 87 YFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPHILIATPGR 146
Query: 1414 LSLKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENA 1468
L I++LE+ N R +L D MD ++ + +++ R
Sbjct: 147 L----------IDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTL 196
Query: 1469 LMSKALVSKRKELQ 1482
L S + K ++LQ
Sbjct: 197 LFSATMTKKVQKLQ 210
Score = 42.0 bits (97), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ LY ++ + K+ LP +P E + ++++R+
Sbjct: 340 DYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQ--LPLYPTQEEEVMVLQERV 397
Query: 1299 DLAKSIEYLESK-IKKNR 1315
A+ I +E K I++N+
Sbjct: 398 AEAQRIVKMELKDIEENK 415
>gi|426371741|ref|XP_004052800.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Gorilla gorilla gorilla]
Length = 455
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEHLIGKK--LPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 427
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 41.6 bits (96), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPGFPTQDDEVMMLTERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 404 AEAQRFARMELREHGEKKKRSRED 427
>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661162|sp|Q6FNK8.1|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
Length = 493
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 235/454 (51%), Gaps = 73/454 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ +I+A F PT IQ+ +P AL A D++G A+TGSGKT AF IPIL
Sbjct: 75 FAQLNLVPELIQACQNLNFTKPTPIQARAIPPAL-AGSDVIGLAQTGSGKTAAFAIPIL- 132
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
NKL ED+ YA +LAPTRELA
Sbjct: 133 ---NKLW----EDQQ-------------------------------PYYACVLAPTRELA 154
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q++ G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ +
Sbjct: 155 QQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGF 212
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + +LV+DE DR+++ P +LDR+ ++ R T++FSAT+T
Sbjct: 213 SLKNLKFLVMDEADRLLDMEFGP----VLDRILKIIPTKGRTTYLFSATMT--------- 259
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
SK K+ + ++ +P ++ K TL ++ ++ K+++L
Sbjct: 260 ----SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFL 304
Query: 1070 YYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + + G+T ++F + ++ +RL+ L +L+ S LH +NQ QR LD F+
Sbjct: 305 IYLLNEFIGKTVIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKR 364
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 365 SILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 424
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
+++ L KK LP +D++++ ++ +D A
Sbjct: 425 ILRIEEVLGKK--LPKESVDKNIILTLRDSVDKA 456
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/503 (28%), Positives = 215/503 (42%), Gaps = 153/503 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ +I+A F PT IQ+ +P AL A D++G A+TGSGKT AF IPIL
Sbjct: 75 FAQLNLVPELIQACQNLNFTKPTPIQARAIPPAL-AGSDVIGLAQTGSGKTAAFAIPIL- 132
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
NKL ED+ YA +LAPTRELA
Sbjct: 133 ---NKLW----EDQQ-------------------------------PYYACVLAPTRELA 154
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q++ G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ +
Sbjct: 155 QQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGF 212
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + +LV+DE DR+++ P +LDR+
Sbjct: 213 SLKNLKFLVMDEADRLLDMEFGP--------------------------------VLDRI 240
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
++ R T++FSAT+T SK K+ + ++ +P
Sbjct: 241 LKIIPTKGRTTYLFSATMT-------------SKIDKLQRA-----------SLTNPVKC 276
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
++ K TL ++ ++ K+++L Y + + G+T+
Sbjct: 277 AVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKTV-------------------- 316
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
I T+T ++ L CN +L+ S
Sbjct: 317 -IIFTRTKANAERLSG---------------------LCN-------------LLEFSAT 341
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
LH +NQ QR LD F+ SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR
Sbjct: 342 ALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRV 401
Query: 633 GRTARANNEGLTVVLIESDEIPL 655
GRTARA G ++ L+ ++ L
Sbjct: 402 GRTARAGRSGKSISLVSQYDLEL 424
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A +LAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 142 YYACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGR 201
Query: 1414 L 1414
L
Sbjct: 202 L 202
>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
gi|52782792|sp|Q9H0S4.1|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEHLIGKK--LPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 427
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 41.6 bits (96), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPGFPTQDDEVMMLTERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 404 AEAQRFARMELREHGEKKKRSRED 427
>gi|346472553|gb|AEO36121.1| hypothetical protein [Amblyomma maculatum]
Length = 473
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 149/447 (33%), Positives = 235/447 (52%), Gaps = 75/447 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q +K+PTKIQ +P AL R D++G AETGSGKT +F +PIL +
Sbjct: 37 LGVVDVLCEACEQLKWKSPTKIQKEAIPVALQGR-DVIGLAETGSGKTASFALPILQAL- 94
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LENP +L+AL+L PTRELA Q+
Sbjct: 95 --LENP------------------------------------QRLFALVLTPTRELAFQI 116
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G VK A +VGG+ Q +L K PH+++ATPGRL + ++ F L L
Sbjct: 117 SEQFEALGASIGVKSAVIVGGIDMMTQALLLAKKPHVIIATPGRLVDHLENTKGFSLKSL 176
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL RV E R+T+++SAT+T
Sbjct: 177 ---KYLVMDEADRILNMDFEEEVDKIL-RVIPRE----RRTYLYSATMT----------- 217
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +++ P V+++ K + L + + KD YL +
Sbjct: 218 -----KKVQK----LQRA----SLRDPVKVEVSSKYQTVEKLMQYYLFIPAKFKDVYLVH 264
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + +VFC++ S+ +R LL L + +PLH M Q +RL +L +F+ +N SI
Sbjct: 265 LLNELAGNSFMVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGSLTKFKSKNRSI 324
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L+ATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ LY
Sbjct: 325 LIATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQ 384
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKK 1217
++ + + KK+ L + ++E V++L+++
Sbjct: 385 RIEHLIGKKLPLYE-TVEEEVMALVER 410
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/501 (27%), Positives = 217/501 (43%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q +K+PTKIQ +P AL R D++G AETGSGKT +F +PIL +
Sbjct: 37 LGVVDVLCEACEQLKWKSPTKIQKEAIPVALQGR-DVIGLAETGSGKTASFALPILQAL- 94
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LENP +L+AL+L PTRELA Q+
Sbjct: 95 --LENP------------------------------------QRLFALVLTPTRELAFQI 116
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G VK A +VGG+ Q +L K PH+++ATPGRL + ++ F L L
Sbjct: 117 SEQFEALGASIGVKSAVIVGGIDMMTQALLLAKKPHVIIATPGRLVDHLENTKGFSLKSL 176
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR+
Sbjct: 177 ---KYLVMDEADRILNMDFEEEVDKILRVI-------PRE-------------------- 206
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+T+++SAT+T KKV K ++R +++ P V++
Sbjct: 207 ------RRTYLYSATMT----------------KKVQK----LQR----ASLRDPVKVEV 236
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD YL + + + G
Sbjct: 237 SSKYQTVEKLMQYYLFIPAKFKDVYLVHLLNELAG------------------------- 271
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ S+ +R LL L + +PL
Sbjct: 272 ------------------NSFMVF------------CSTCSNTQRTALLLRNLGFTAIPL 301
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M Q +RL +L +F+ +N SIL+ATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 302 HGQMGQAKRLGSLTKFKSKNRSILIATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGR 361
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 362 TARAGRSGKAITFVTQYDVEL 382
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G VK A +VGG+ Q +L K PH+++ATPG L
Sbjct: 103 ALVLTPTRELAFQISEQFEALGASIGVKSAVIVGGIDMMTQALLLAKKPHVIIATPGRL 161
>gi|402590562|gb|EJW84492.1| DEAD box ATP-dependent RNA helicase [Wuchereria bancrofti]
Length = 462
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/487 (31%), Positives = 251/487 (51%), Gaps = 85/487 (17%)
Query: 756 DTSNNEDMFV--QMAE-------WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR 806
D+S++ED V Q+ E + K + + + A + +K PTK+Q +P A +
Sbjct: 3 DSSSDEDETVPTQLVEEQNDDITFQKLGVTDVLCEACDRLNWKKPTKVQIAALPHAF-KK 61
Query: 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866
+DI+G AETGSGKT AF IPIL + LE P
Sbjct: 62 RDIIGLAETGSGKTAAFAIPILQAL---LETP---------------------------- 90
Query: 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926
KL+AL+L PTRELA Q+ G + +A +VGG+ T Q L K
Sbjct: 91 --------QKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGIDTVTQSLALAKR 142
Query: 927 PHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
PH++VATPGRL + ++ F+L L YLV+DE DR++ EL+ IL +
Sbjct: 143 PHVIVATPGRLVDHLENTKGFNLRAL---KYLVMDEADRILNMDFEVELEKILKVI---- 195
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 1045
+ R+T+++SAT+T KKV+K + + ++ P ++++
Sbjct: 196 -PKERRTYLYSATMT----------------KKVAKLERA--------SLVDPVRIEVSS 230
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSP 1104
K L + I + K++YL Y + + G+T +VFC++ +S + +L L
Sbjct: 231 KYQTVDKLKQYYIFIPYKYKEAYLIYILNEMAGQTAIVFCSTCASALKTALMLRKLGFGA 290
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
+PLH M+Q +RL +L++F+ + +++L+ TDVA+RGLDIP ++ V++Y VP S+ Y+HR
Sbjct: 291 VPLHGQMSQAKRLGSLNKFKSKASTVLVCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHR 350
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
GRTARA G+ + + ++ +Y K+ + KK LP F E+ + L+ +R++ A+
Sbjct: 351 VGRTARAGRSGVAVTFVTQYDVEIYQKIERLIGKK--LPLFETVENDVMLLVERVEEAQK 408
Query: 1225 IEYLESK 1231
+ E K
Sbjct: 409 LAKQEMK 415
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/530 (26%), Positives = 230/530 (43%), Gaps = 165/530 (31%)
Query: 139 DTSNNEDMFV--QMAE-------WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR 189
D+S++ED V Q+ E + K + + + A + +K PTK+Q +P A +
Sbjct: 3 DSSSDEDETVPTQLVEEQNDDITFQKLGVTDVLCEACDRLNWKKPTKVQIAALPHAF-KK 61
Query: 190 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249
+DI+G AETGSGKT AF IPIL + LE P
Sbjct: 62 RDIIGLAETGSGKTAAFAIPILQAL---LETP---------------------------- 90
Query: 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309
KL+AL+L PTRELA Q+ G + +A +VGG+ T Q L K
Sbjct: 91 --------QKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGIDTVTQSLALAKR 142
Query: 310 PHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
PH++VATPGRL + ++ F+L L YLV+DE DR++ EL+ IL +
Sbjct: 143 PHVIVATPGRLVDHLENTKGFNLRAL---KYLVMDEADRILNMDFEVELEKILKVI---- 195
Query: 369 TSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSK 428
P++ R+T+++SAT+T K
Sbjct: 196 ---PKE--------------------------RRTYLYSATMT----------------K 210
Query: 429 KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 488
KV+K + + ++ P ++++ K L + I + K++YL Y + +
Sbjct: 211 KVAKLERA--------SLVDPVRIEVSSKYQTVDKLKQYYIFIPYKYKEAYLIYILNEMA 262
Query: 489 GRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
G+T + + C
Sbjct: 263 GQT-------------------------------AIVFC--------------------- 270
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608
++ +S + +L L +PLH M+Q +RL +L++F+ + +++L+ TDVA+RGL
Sbjct: 271 ---STCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKASTVLVCTDVASRGL 327
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK 658
DIP ++ V++Y VP S+ Y+HR GRTARA G+ V + ++ + K
Sbjct: 328 DIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVEIYQK 377
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G + +A +VGG+ T Q L K PH++VATPG L
Sbjct: 95 ALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGIDTVTQSLALAKRPHVIVATPGRL 153
>gi|397474910|ref|XP_003808899.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pan paniscus]
Length = 455
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEHLIGKK--LPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 427
Score = 179 bits (455), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 41.6 bits (96), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPGFPTQDDEVMMLTERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 404 AEAQRFARMELREHGEKKKRSRED 427
>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pongo abelii]
Length = 455
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEHLIGKK--LPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 427
Score = 179 bits (455), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 41.6 bits (96), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPGFPTQDDEVMMLTERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 404 AEAQRFARMELREHGEKKKRSRED 427
>gi|417401266|gb|JAA47524.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 455
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 235/459 (51%), Gaps = 76/459 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH MNQ +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++ + + KK LP FP + + ++ +R+ A+ +E
Sbjct: 377 RIEHLIGKK--LPVFPTQDDEVMMLTERVTEAQRFARME 413
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 145/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H MNQ +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMNQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
>gi|328872649|gb|EGG21016.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 909
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/284 (44%), Positives = 179/284 (63%), Gaps = 17/284 (5%)
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI----KSPKIV 1041
TS RQTF+FSAT+ ++ ++ + KK + + LQ L++ + K++
Sbjct: 564 TSVKRQTFIFSATIV-----GVHDEQQKDAKKKKKYANKELTPLQTLISKINFHRKYKLI 618
Query: 1042 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 1101
D T K +L ESKILC DEKD YLYYFI ++PG+TLVF NS+ ++RL +L +LK
Sbjct: 619 DCTLKKLTAHSLKESKILCNLDEKDQYLYYFIDRYPGKTLVFVNSVDCIRRLLAILKLLK 678
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
PLHA M QRQRL+NLD F+ + N IL+ATDVAARGLDIPG+EHV+HY +PRT E+Y
Sbjct: 679 VVAFPLHAQMEQRQRLRNLDHFKREKNVILIATDVAARGLDIPGVEHVVHYQMPRTIELY 738
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDL 1221
+HRSGRTAR+N EG++++ ++ E Y + LE ++ DFPID + +++RI +
Sbjct: 739 VHRSGRTARSNREGISVLFVDPSEQKTYAAFTDKLEHEI--LDFPIDFKFMPAVRERIGM 796
Query: 1222 AKSIEYLESKIKKNRPD--NWLHRSGRTARANNEGLTLVLIESD 1263
A I+ +S KK D NW R+ A+A + L V +SD
Sbjct: 797 AYDIDK-QSFEKKKVSDEKNWYLRN---AKAIDMQLDDVFYQSD 836
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 113/147 (76%)
Query: 506 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 565
K++D T K +L ESKILC DEKD YLYYFI ++PG+TLVF NS+ ++RL +L
Sbjct: 616 KLIDCTLKKLTAHSLKESKILCNLDEKDQYLYYFIDRYPGKTLVFVNSVDCIRRLLAILK 675
Query: 566 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625
+LK PLHA M QRQRL+NLD F+ + N IL+ATDVAARGLDIPG+EHV+HY +PRT
Sbjct: 676 LLKVVAFPLHAQMEQRQRLRNLDHFKREKNVILIATDVAARGLDIPGVEHVVHYQMPRTI 735
Query: 626 EIYIHRSGRTARANNEGLTVVLIESDE 652
E+Y+HRSGRTAR+N EG++V+ ++ E
Sbjct: 736 ELYVHRSGRTARSNREGISVLFVDPSE 762
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 19/219 (8%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+ M W +N+ II+ L G++ PT+IQS V+P+++ + DI+GAAETGSGKTLAFG
Sbjct: 247 LDMTVWESYNLDPLIIKGLRALGYERPTEIQSQVIPASIQSGNDIIGAAETGSGKTLAFG 306
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK--TRNKLYALIL 265
IP++ I+ L E+ + + +KK + KL AL+L
Sbjct: 307 IPMVNTILKYLRAQGED-----------------VTRSTLPQVGLLKKDNSHKKLLALVL 349
Query: 266 APTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 325
PTRELAIQV NH+ T +++ VVGG+S +KQ R LN P I+VATPGRLWE I
Sbjct: 350 CPTRELAIQVTNHLRTVALETSLRIISVVGGLSQKKQDRELNSKPEIVVATPGRLWELID 409
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364
G +L + + IDE DRM+E G F E+ +IL+R+
Sbjct: 410 EGDKYLGDFTNLLCFGIDEADRMVEKGVFREIDSILERL 448
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 19/219 (8%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+ M W +N+ II+ L G++ PT+IQS V+P+++ + DI+GAAETGSGKTLAFG
Sbjct: 247 LDMTVWESYNLDPLIIKGLRALGYERPTEIQSQVIPASIQSGNDIIGAAETGSGKTLAFG 306
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK--TRNKLYALIL 882
IP++ I+ L E+ + + +KK + KL AL+L
Sbjct: 307 IPMVNTILKYLRAQGED-----------------VTRSTLPQVGLLKKDNSHKKLLALVL 349
Query: 883 APTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942
PTRELAIQV NH+ T +++ VVGG+S +KQ R LN P I+VATPGRLWE I
Sbjct: 350 CPTRELAIQVTNHLRTVALETSLRIISVVGGLSQKKQDRELNSKPEIVVATPGRLWELID 409
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 981
G +L + + IDE DRM+E G F E+ +IL+R+
Sbjct: 410 EGDKYLGDFTNLLCFGIDEADRMVEKGVFREIDSILERL 448
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 41/59 (69%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELAIQV NH+ T +++ VVGG+S +KQ R LN P I+VATPG L
Sbjct: 346 ALVLCPTRELAIQVTNHLRTVALETSLRIISVVGGLSQKKQDRELNSKPEIVVATPGRL 404
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 58/96 (60%), Gaps = 5/96 (5%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTAR+N EG++++ ++ E Y + LE ++ DFPID + +++RI
Sbjct: 738 YVHRSGRTARSNREGISVLFVDPSEQKTYAAFTDKLEHEI--LDFPIDFKFMPAVRERIG 795
Query: 1300 LAKSIEYLESKIKKNRPD--NWLEKAAKDMDIIIDD 1333
+A I+ +S KK D NW + AK +D+ +DD
Sbjct: 796 MAYDIDK-QSFEKKKVSDEKNWYLRNAKAIDMQLDD 830
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 397 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI----KSPKIV 452
TS RQTF+FSAT+ ++ ++ + KK + + LQ L++ + K++
Sbjct: 564 TSVKRQTFIFSATIV-----GVHDEQQKDAKKKKKYANKELTPLQTLISKINFHRKYKLI 618
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
D T K +L ESKILC DEKD YLYYFI ++PG+TL
Sbjct: 619 DCTLKKLTAHSLKESKILCNLDEKDQYLYYFIDRYPGKTLV 659
>gi|350537559|ref|NP_001233477.1| probable ATP-dependent RNA helicase DDX47 [Pan troglodytes]
gi|343958142|dbj|BAK62926.1| apolipoprotein-L domain-containing protein 1 [Pan troglodytes]
gi|410264252|gb|JAA20092.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410305384|gb|JAA31292.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410329313|gb|JAA33603.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
Length = 455
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEHLIGKK--LPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 427
Score = 179 bits (455), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 41.6 bits (96), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPGFPTQDDEVMMLTERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 404 AEAQRFARMELREHGEKKKRSRED 427
>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
Length = 523
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/464 (33%), Positives = 237/464 (51%), Gaps = 76/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + +T+ +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 66 WKDLGLNDTLCKACEELKWKAPSKIQKEAIPVALQG-KDVIGLAETGSGKTGAFALPILH 124
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LENP + +AL+L PTRELA
Sbjct: 125 AL---LENP------------------------------------QRYFALVLTPTRELA 145
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ L F+L
Sbjct: 146 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENLKGFNL 205
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
I YLV+DE DR++ EL IL + + R+TF+FSAT+T
Sbjct: 206 K---AIKYLVMDEADRILNMDFEVELDKILKVL-----PRERRTFLFSATMT-------- 249
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K+LQ ++K P V+++ K L + I KD Y
Sbjct: 250 --------KKV-------KKLQRA-SLKDPVKVEVSNKYQTVDQLQQYYIFIPVKYKDVY 293
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC++ ++ + +L L + +PLH M+Q +RL L++F+ +N
Sbjct: 294 LVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKN 353
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + ++ +I
Sbjct: 354 RSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIE 413
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY ++ L K+ LP + +E + +++R+ A+ LE K
Sbjct: 414 LYQRIEQLLGKQ--LPLYKCEEDEVMALQERVAEAQRTAKLELK 455
Score = 184 bits (466), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 145/504 (28%), Positives = 218/504 (43%), Gaps = 156/504 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + +T+ +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 66 WKDLGLNDTLCKACEELKWKAPSKIQKEAIPVALQG-KDVIGLAETGSGKTGAFALPILH 124
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LENP + +AL+L PTRELA
Sbjct: 125 AL---LENP------------------------------------QRYFALVLTPTRELA 145
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ L F+L
Sbjct: 146 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENLKGFNL 205
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
I YLV+DE DR++ EL IL + PR+
Sbjct: 206 K---AIKYLVMDEADRILNMDFEVELDKILKVL-------PRE----------------- 238
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+TF+FSAT+T KKV K+LQ ++K P
Sbjct: 239 ---------RRTFLFSATMT----------------KKV-------KKLQR-ASLKDPVK 265
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K L + I KD YL + + + G
Sbjct: 266 VEVSNKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAG---------------------- 303
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+S++ + C++ ++ + +L L +
Sbjct: 304 ---------------------NSFMIF------------CSTCNNTVKTALMLRALGLAA 330
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR
Sbjct: 331 IPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHR 390
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTARA G + ++ +I L
Sbjct: 391 VGRTARAGRSGQAITMVTQYDIEL 414
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG L
Sbjct: 135 ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 194
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
+LK +L K+I+YL + D L +MD ++ + +++ R L
Sbjct: 195 DHLENLKGFNL-KAIKYL----VMDEADRIL-----NMDFEVELDKILKVLPRERRTFLF 244
Query: 1471 SKALVSKRKELQ 1482
S + K K+LQ
Sbjct: 245 SATMTKKVKKLQ 256
>gi|39644716|gb|AAH09379.2| DDX47 protein, partial [Homo sapiens]
Length = 450
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 24 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 81
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 82 --LETP------------------------------------QRLFALVLTPTRELAFQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 104 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 163
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 164 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 204
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 205 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 251
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 252 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 311
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 312 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 371
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 372 RIEHLIGKK--LPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 422
Score = 179 bits (455), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 24 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 81
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 82 --LETP------------------------------------QRLFALVLTPTRELAFQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 104 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 163
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 164 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 193
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 194 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 223
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 224 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 258
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 259 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 288
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 289 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 348
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 349 TARAGRSGKAITFVTQYDVEL 369
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 90 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 148
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 149 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 200 SATMTKKVQKLQ 211
Score = 41.2 bits (95), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 341 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPGFPTQDDEVMMLTERV 398
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 399 AEAQRFARMELREHGEKKKRSRED 422
>gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster]
Length = 507
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 153/464 (32%), Positives = 239/464 (51%), Gaps = 76/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + E + +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 63 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 121
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LENP + +AL+L PTRELA
Sbjct: 122 AL---LENP------------------------------------QRYFALVLTPTRELA 142
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 143 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 202
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
I YLV+DE DR++ EL IL + + R+TF+FSAT+T
Sbjct: 203 K---AIKYLVMDEADRILNMDFEVELDKILKVL-----PRERRTFLFSATMT-------- 246
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K+LQ ++K P V+++ K + L +S + KD Y
Sbjct: 247 --------KKV-------KKLQRA-SLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVY 290
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC++ ++ + +L L + +PLH M+Q +RL L++F+ +N
Sbjct: 291 LVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKN 350
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + L+ +I
Sbjct: 351 RSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIE 410
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY ++ + L K++ L + +E + +++R+ A+ LE K
Sbjct: 411 LYQRIEHLLGKQLTL--YKCEEDEVMALQERVAEAQRTAKLELK 452
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 145/504 (28%), Positives = 219/504 (43%), Gaps = 156/504 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + E + +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 63 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 121
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LENP + +AL+L PTRELA
Sbjct: 122 AL---LENP------------------------------------QRYFALVLTPTRELA 142
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 143 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 202
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
I YLV+DE DR++ EL IL + PR+
Sbjct: 203 K---AIKYLVMDEADRILNMDFEVELDKILKVL-------PRE----------------- 235
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+TF+FSAT+T KKV K+LQ ++K P
Sbjct: 236 ---------RRTFLFSATMT----------------KKV-------KKLQR-ASLKDPVK 262
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K + L +S + KD YL + + + G
Sbjct: 263 VEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAG---------------------- 300
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+S++ + C++ ++ + +L L +
Sbjct: 301 ---------------------NSFMIF------------CSTCNNTVKTALMLRALGLAA 327
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR
Sbjct: 328 IPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHR 387
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTARA G + L+ +I L
Sbjct: 388 VGRTARAGRSGKAITLVSQYDIEL 411
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG L
Sbjct: 132 ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 191
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
++K +L K+I+YL + D L +MD ++ + +++ R L
Sbjct: 192 DHLENMKGFNL-KAIKYLVM----DEADRIL-----NMDFEVELDKILKVLPRERRTFLF 241
Query: 1471 SKALVSKRKELQ 1482
S + K K+LQ
Sbjct: 242 SATMTKKVKKLQ 253
>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAVPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEHLIGKK--LPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 427
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAVPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 41.6 bits (96), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPGFPTQDDEVMMLTERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 404 AEAQRFARMELREHGEKKKRSRED 427
>gi|365984991|ref|XP_003669328.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
gi|343768096|emb|CCD24085.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
Length = 504
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 246/485 (50%), Gaps = 76/485 (15%)
Query: 739 KKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMV 798
K K+++ S +E E + S + + F +E N+ +I+A + PT IQS
Sbjct: 58 KTNKRSHKSKQEEEDEDENSTSYETFETFSE---LNLVPELIQACKNLNYSKPTPIQSKS 114
Query: 799 MPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 858
+P AL DI+G A+TGSGKT AF IPIL + +
Sbjct: 115 IPPALKGH-DIIGLAQTGSGKTAAFAIPILNSLWHD------------------------ 149
Query: 859 LEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK 918
+ YA ILAPTRELA Q++ G V+ C+VGGM+
Sbjct: 150 ---------------QQPYYACILAPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMD 194
Query: 919 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 978
Q R L + PH+++ATPGRL + ++ + L K+ YLV+DE DR+++ P +L
Sbjct: 195 QARDLMRKPHVIIATPGRLMDHLE--NTKGFSLRKLKYLVMDEADRLLDMEFGP----VL 248
Query: 979 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 1038
DR+ +Q R T++FSAT+T SK K+ + ++ +P
Sbjct: 249 DRILKILPTQGRTTYLFSATMT-------------SKIDKLQRA-----------SLTNP 284
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLL 1097
++ K TL ++ I+ K+++L Y + ++ G+ T++F + ++ +R++ L
Sbjct: 285 VKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLNEYIGKSTIIFTRTKANAERISGLC 344
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
+L+ + LH +NQ QR LD F+ +IL+ATDVAARGLDIP ++ VI+Y +P
Sbjct: 345 NLLEFNATALHGDLNQNQRTGALDLFKAGRKTILVATDVAARGLDIPSVDIVINYDIPVD 404
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217
S+ YIHR GRTARA G ++ L+ ++ L +++ L KK LP +D+ ++ ++
Sbjct: 405 SKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKK--LPKETVDKEMILTLRD 462
Query: 1218 RIDLA 1222
+D A
Sbjct: 463 SVDKA 467
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 146/534 (27%), Positives = 226/534 (42%), Gaps = 156/534 (29%)
Query: 122 KKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMV 181
K K+++ S +E E + S + + F +E N+ +I+A + PT IQS
Sbjct: 58 KTNKRSHKSKQEEEDEDENSTSYETFETFSE---LNLVPELIQACKNLNYSKPTPIQSKS 114
Query: 182 MPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 241
+P AL DI+G A+TGSGKT AF IPIL + +
Sbjct: 115 IPPALKGH-DIIGLAQTGSGKTAAFAIPILNSLWHD------------------------ 149
Query: 242 LEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK 301
+ YA ILAPTRELA Q++ G V+ C+VGGM+
Sbjct: 150 ---------------QQPYYACILAPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMD 194
Query: 302 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
Q R L + PH+++ATPGRL + ++ + L K+ YLV+DE DR+++ P
Sbjct: 195 QARDLMRKPHVIIATPGRLMDHLE--NTKGFSLRKLKYLVMDEADRLLDMEFGP------ 246
Query: 362 DRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLK 421
+LDR+ +Q R T++FSAT+T
Sbjct: 247 --------------------------VLDRILKILPTQGRTTYLFSATMT---------- 270
Query: 422 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 481
SK K+ + ++ +P ++ K TL ++ I+ K+++L
Sbjct: 271 ---SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLI 316
Query: 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 541
Y + ++ G++ I T+T ++
Sbjct: 317 YLLNEYIGKS---------------------TIIFTRTKANAE----------------- 338
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
R CN +L+ + LH +NQ QR LD F+ +IL+AT
Sbjct: 339 ----RISGLCN-------------LLEFNATALHGDLNQNQRTGALDLFKAGRKTILVAT 381
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
DVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 382 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 435
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PH+++ATPG
Sbjct: 153 YYACILAPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDQARDLMRKPHVIIATPGR 212
Query: 1414 L 1414
L
Sbjct: 213 L 213
>gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster]
gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster]
gi|384475998|gb|AFH89832.1| FI20110p1 [Drosophila melanogaster]
Length = 507
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 153/464 (32%), Positives = 239/464 (51%), Gaps = 76/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + E + +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 63 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 121
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LENP + +AL+L PTRELA
Sbjct: 122 AL---LENP------------------------------------QRYFALVLTPTRELA 142
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 143 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 202
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
I YLV+DE DR++ EL IL + + R+TF+FSAT+T
Sbjct: 203 K---AIKYLVMDEADRILNMDFEVELDKILKVL-----PRERRTFLFSATMT-------- 246
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K+LQ ++K P V+++ K + L +S + KD Y
Sbjct: 247 --------KKV-------KKLQRA-SLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVY 290
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC++ ++ + +L L + +PLH M+Q +RL L++F+ +N
Sbjct: 291 LVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKN 350
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + L+ +I
Sbjct: 351 RSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIE 410
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY ++ + L K++ L + +E + +++R+ A+ LE K
Sbjct: 411 LYQRIEHLLGKQLTL--YKCEEDEVMALQERVAEAQRTAKLELK 452
Score = 184 bits (468), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 145/504 (28%), Positives = 219/504 (43%), Gaps = 156/504 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + E + +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 63 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 121
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LENP + +AL+L PTRELA
Sbjct: 122 AL---LENP------------------------------------QRYFALVLTPTRELA 142
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 143 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 202
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
I YLV+DE DR++ EL IL + PR+
Sbjct: 203 K---AIKYLVMDEADRILNMDFEVELDKILKVL-------PRE----------------- 235
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+TF+FSAT+T KKV K+LQ ++K P
Sbjct: 236 ---------RRTFLFSATMT----------------KKV-------KKLQR-ASLKDPVK 262
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K + L +S + KD YL + + + G
Sbjct: 263 VEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAG---------------------- 300
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+S++ + C++ ++ + +L L +
Sbjct: 301 ---------------------NSFMIF------------CSTCNNTVKTALMLRALGLAA 327
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR
Sbjct: 328 IPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHR 387
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTARA G + L+ +I L
Sbjct: 388 VGRTARAGRSGKAITLVSQYDIEL 411
Score = 60.1 bits (144), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG L
Sbjct: 132 ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 191
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
++K +L K+I+YL + D L +MD ++ + +++ R L
Sbjct: 192 DHLENMKGFNL-KAIKYLVM----DEADRIL-----NMDFEVELDKILKVLPRERRTFLF 241
Query: 1471 SKALVSKRKELQ 1482
S + K K+LQ
Sbjct: 242 SATMTKKVKKLQ 253
>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
Length = 453
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 150/459 (32%), Positives = 235/459 (51%), Gaps = 76/459 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 30 LGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGR-DIIGLAETGSGKTGAFALPILQAL- 87
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
L+ P +L+AL+L PTRELA Q+
Sbjct: 88 --LDAP------------------------------------QRLFALVLTPTRELAFQI 109
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 110 SEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATPGRLVDHLENTKGFNLRAL 169
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+LV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 170 ---KFLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMTKQ--------- 212
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
+++LQ +K+P ++ K + L + I KDSYL Y
Sbjct: 213 --------------VQKLQRA-ALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVY 257
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 258 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSI 317
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++ L+
Sbjct: 318 LLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQ 377
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++ + + KK LP FP+ E + ++ +R+ A+ +E
Sbjct: 378 RIEHLIGKK--LPAFPMQEEEVMMLTERVAEAQRFARME 414
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 152/535 (28%), Positives = 227/535 (42%), Gaps = 168/535 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 30 LGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGR-DIIGLAETGSGKTGAFALPILQAL- 87
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
L+ P +L+AL+L PTRELA Q+
Sbjct: 88 --LDAP------------------------------------QRLFALVLTPTRELAFQI 109
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 110 SEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATPGRLVDHLENTKGFNLRAL 169
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+LV+DE DR++ E+ IL + PR
Sbjct: 170 ---KFLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 199
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T +++LQ +K+P +
Sbjct: 200 ------RKTFLFSATMTK-----------------------QVQKLQR-AALKNPVKCAV 229
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KDSYL Y + + G
Sbjct: 230 SSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAG------------------------- 264
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 265 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 294
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ VI++ +P S+ YIHR GR
Sbjct: 295 HGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGR 354
Query: 635 TARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEADK 677
TARA G ++ + ++ L + F +QEEE ER AEA +
Sbjct: 355 TARAGRSGKSITFVTQYDVELFQRIEHLIGKKLPAFPMQEEEVMMLTERVAEAQR 409
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G V A +VGG+ + Q L K PHI++ATPG L
Sbjct: 96 ALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATPGRL 154
Score = 42.7 bits (99), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L+ ++ + + KK LP FP+ E + ++ +R+
Sbjct: 347 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKK--LPAFPMQEEEVMMLTERV 404
Query: 1299 DLAKSIEYLE 1308
A+ +E
Sbjct: 405 AEAQRFARME 414
>gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Meleagris
gallopavo]
Length = 447
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 151/458 (32%), Positives = 236/458 (51%), Gaps = 76/458 (16%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+ + + A Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 25 GVTDVLCEACDQLGWKIPTKIQVEAIPVALQGR-DIIGLAETGSGKTGAFALPILQAL-- 81
Query: 834 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
L+ P +L+AL+L PTRELA Q+
Sbjct: 82 -LDAP------------------------------------QRLFALVLTPTRELAFQIS 104
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELY 952
G V A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 105 EQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATPGRLVDHLENTKGFNLRAL- 163
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+LV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 164 --KFLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMTKQ---------- 206
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
+++LQ +K+P ++ K + L + I KDSYL Y
Sbjct: 207 -------------VQKLQRA-ALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYI 252
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G + +VFC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SIL
Sbjct: 253 LNELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSIL 312
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
LATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++ L+ +
Sbjct: 313 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 372
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
+ + + KK LP FP+ E + ++++R+ A+ +E
Sbjct: 373 IEHLIGKK--LPAFPMQEEEVMMLQERVAEAQRFARME 408
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 152/534 (28%), Positives = 228/534 (42%), Gaps = 168/534 (31%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+ + + A Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 25 GVTDVLCEACDQLGWKIPTKIQVEAIPVALQGR-DIIGLAETGSGKTGAFALPILQAL-- 81
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
L+ P +L+AL+L PTRELA Q+
Sbjct: 82 -LDAP------------------------------------QRLFALVLTPTRELAFQIS 104
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELY 335
G V A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 105 EQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATPGRLVDHLENTKGFNLRAL- 163
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+LV+DE DR++ E+ IL + PR
Sbjct: 164 --KFLVMDEADRILNMDFETEVDKILKVI-------PRD--------------------- 193
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+TF+FSAT+T +++LQ +K+P ++
Sbjct: 194 -----RKTFLFSATMTK-----------------------QVQKLQR-AALKNPVKCAVS 224
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K + L + I KDSYL Y + + G
Sbjct: 225 SKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAG-------------------------- 258
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+S++ + C++ ++ +R LL L + +PLH
Sbjct: 259 -----------------NSFMVF------------CSTCNNTQRTALLLRNLGFTAIPLH 289
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ VI++ +P S+ YIHR GRT
Sbjct: 290 GQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRT 349
Query: 636 ARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEADK 677
ARA G ++ + ++ L + F +QEEE +ER AEA +
Sbjct: 350 ARAGRSGKSITFVTQYDVELFQRIEHLIGKKLPAFPMQEEEVMMLQERVAEAQR 403
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G V A +VGG+ + Q L K PHI++ATPG L
Sbjct: 90 ALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATPGRL 148
Score = 43.5 bits (101), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L+ ++ + + KK LP FP+ E + ++++R+
Sbjct: 341 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKK--LPAFPMQEEEVMMLQERV 398
Query: 1299 DLAKSIEYLE 1308
A+ +E
Sbjct: 399 AEAQRFARME 408
>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
gi|52782790|sp|Q9CWX9.2|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
musculus]
Length = 455
Score = 224 bits (572), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 150/459 (32%), Positives = 236/459 (51%), Gaps = 76/459 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++ + + KK LP FP + + ++ +R++ A+ +E
Sbjct: 377 RIEHLIGKK--LPVFPTQDEEVMMLTERVNEAQRFARME 413
Score = 180 bits (456), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 41.6 bits (96), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDEEVMMLTERV 403
Query: 1299 DLAKSIEYLESKIKKNRPDNWLEKAAKDMD 1328
+ A+ +E + + E A D D
Sbjct: 404 NEAQRFARMELREHGEKKKRKREDAGDDDD 433
>gi|355564029|gb|EHH20529.1| Putative ATP-dependent RNA helicase DDX47 [Macaca mulatta]
gi|355785916|gb|EHH66099.1| Putative ATP-dependent RNA helicase DDX47 [Macaca fascicularis]
gi|380786753|gb|AFE65252.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca mulatta]
gi|383418889|gb|AFH32658.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca mulatta]
Length = 455
Score = 224 bits (571), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEHLIGKK--LPVFPTQDDEVMMLAERVAEAQRFARMELREHGEKKKRSRED 427
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 40.4 bits (93), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLAERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 404 AEAQRFARMELREHGEKKKRSRED 427
>gi|258563612|ref|XP_002582551.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
gi|237908058|gb|EEP82459.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
Length = 472
Score = 224 bits (571), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 223/431 (51%), Gaps = 73/431 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ +++ A G+K PT+IQ+ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 51 LGVIDSLCEACESLGYKAPTQIQAESIPLALQGR-DVIGLAETGSGKTAAFALPILQALM 109
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K ++ ++ L+LAPTRELA Q+
Sbjct: 110 DKPQS---------------------------------------MFGLVLAPTRELAYQI 130
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 131 SEQVEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLE--NTKGFSLR 188
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ YLV+DE DR+++ P ILD++ + + R+T++FSAT++ ++
Sbjct: 189 NLKYLVMDEADRLLDLDFGP----ILDKI-LKVLPKERRTYLFSATMSSKVE-------- 235
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYY 1071
S++R ++ +P V ++ K TL ++ + H KD Y Y
Sbjct: 236 ------------SLQRA----SLSNPLRVSISSNKYQTVATLLQNYLFIPHKYKDIYFVY 279
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + PG++ +VF +++ +RL LL L +PLH ++Q RL L +FR ++ +I
Sbjct: 280 LLNEFPGQSVIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNI 339
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA G L+ +I ++
Sbjct: 340 LVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGHAFSLVTQFDIEIWQ 399
Query: 1191 KMFNSLEKKVD 1201
++ +L K D
Sbjct: 400 RIEGALGKTFD 410
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 153/557 (27%), Positives = 240/557 (43%), Gaps = 165/557 (29%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ +++ A G+K PT+IQ+ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 51 LGVIDSLCEACESLGYKAPTQIQAESIPLALQGR-DVIGLAETGSGKTAAFALPILQALM 109
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K ++ ++ L+LAPTRELA Q+
Sbjct: 110 DKPQS---------------------------------------MFGLVLAPTRELAYQI 130
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 131 SEQVEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLE--NTKGFSLR 188
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ P L IL + P++
Sbjct: 189 NLKYLVMDEADRLLDLDFGPILDKILKVL-------PKE--------------------- 220
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+T++FSAT++ ++ S++R ++ +P V ++
Sbjct: 221 -----RRTYLFSATMSSKVE--------------------SLQR----ASLSNPLRVSIS 251
Query: 456 E-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
K TL ++ + H KD Y Y + + PG+++ I
Sbjct: 252 SNKYQTVATLLQNYLFIPHKYKDIYFVYLLNEFPGQSV---------------------I 290
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
T+T+ E+ +RL LL L +PL
Sbjct: 291 VFTRTVNET----------------------------------QRLAILLRALGFGAIPL 316
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H ++Q RL L +FR ++ +IL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GR
Sbjct: 317 HGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGR 376
Query: 635 TARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKL 694
TARA G L+ T+F+++ + E D+ KTE V V S ++
Sbjct: 377 TARAGKSGHAFSLV--------TQFDIEIWQRIEGALGKTFDEYKTEKEEVMVLS--DRV 426
Query: 695 KRKQNPSQVEVSELSAN 711
Q + E+ EL N
Sbjct: 427 SEAQRHAITEMKELHEN 443
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 36/62 (58%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S L+LAPTRELA Q+ + G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 114 SMFGLVLAPTRELAYQISEQVEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPG 173
Query: 1413 AL 1414
L
Sbjct: 174 RL 175
>gi|348569354|ref|XP_003470463.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Cavia porcellus]
Length = 455
Score = 224 bits (571), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 28 LGVTDVLCEACDQLGWAKPTKIQIEAIPMALQGR-DIIGLAETGSGKTGAFALPILNAL- 85
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 86 --LETP------------------------------------QRLFALVLTPTRELAFQI 107
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 108 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 167
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 168 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 208
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 209 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 255
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 256 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 315
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 316 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 375
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 376 RIEHLIGKK--LPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRSRED 426
Score = 180 bits (456), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 28 LGVTDVLCEACDQLGWAKPTKIQIEAIPMALQGR-DIIGLAETGSGKTGAFALPILNAL- 85
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 86 --LETP------------------------------------QRLFALVLTPTRELAFQI 107
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 108 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 167
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 168 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 197
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 198 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 227
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 228 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 262
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 263 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 292
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 293 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 352
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 353 TARAGRSGKAITFVTQYDVEL 373
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 94 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 152
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 153 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 203
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 204 SATMTKKVQKLQ 215
Score = 40.4 bits (93), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 345 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLTERV 402
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 403 TEAQRFARMELREHGEKKKRSRED 426
>gi|402885238|ref|XP_003906071.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1 [Papio
anubis]
Length = 455
Score = 224 bits (571), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEHLIGKK--LPVFPTQDDEVMMLAERVAEAQRFARMELREHGEKKKRSRED 427
Score = 180 bits (456), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 40.4 bits (93), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLAERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 404 AEAQRFARMELREHGEKKKRSRED 427
>gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163]
Length = 472
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/493 (30%), Positives = 238/493 (48%), Gaps = 95/493 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I + + A G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 57 LGIIDQLCEACETMGYKAPTPIQAESIPLALQGR-DLIGLAETGSGKTAAFALPILQALM 115
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
K ++ + LILAPTRELA Q+
Sbjct: 116 EKPQS---------------------------------------FFGLILAPTRELAFQI 136
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G V+ A +VGGM Q L K PHI+VATPGRL L H T+
Sbjct: 137 SKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRL-----LDHLENTKGF 191
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH-------- 1001
L + YLV+DE DR+++ P L IL + + R+TF+FSAT++
Sbjct: 192 SLRTLKYLVMDEADRLLDMDFGPLLDKILKVL-----PRERRTFLFSATMSSKVESLQRA 246
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
SL N L + +K + VS TL +S +
Sbjct: 247 SLSNPLRVSVSSNKYQTVS-------------------------------TLLQSYLFLP 275
Query: 1062 HDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
H KD YL Y + + G+ T++F ++ +R++ LL L +PLH ++Q RL L
Sbjct: 276 HKHKDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGAL 335
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+FR ++ IL+ATDVAARGLDIP ++ V+++ +P S+ Y+HR GRTARA G+ +
Sbjct: 336 GKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISF 395
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNW 1240
+ ++ +++++ +L KK L ++ +++ + ++ +R+ A+ +E K +
Sbjct: 396 VTQYDVEIWLRIEGALGKK--LKEYELEKDEVMVLAERVGEAQRQAIMEMKNFDEKRGTK 453
Query: 1241 LHRSGRTARANNE 1253
+ G+ R+ +E
Sbjct: 454 AKKFGKGKRSRDE 466
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 144/504 (28%), Positives = 206/504 (40%), Gaps = 175/504 (34%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I + + A G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 57 LGIIDQLCEACETMGYKAPTPIQAESIPLALQGR-DLIGLAETGSGKTAAFALPILQALM 115
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
K ++ + LILAPTRELA Q+
Sbjct: 116 EKPQS---------------------------------------FFGLILAPTRELAFQI 136
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G V+ A +VGGM Q L K PHI+VATPGRL L H T+
Sbjct: 137 SKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRL-----LDHLENTKGF 191
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YLV+DE DR+++ P L IL + PR+
Sbjct: 192 SLRTLKYLVMDEADRLLDMDFGPLLDKILKVL-------PRE------------------ 226
Query: 393 TMTETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
R+TF+FSAT++ SL N L + +K + VS
Sbjct: 227 --------RRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVS------------- 265
Query: 445 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
TL +S + H KD YL Y + + G++
Sbjct: 266 ------------------TLLQSYLFLPHKHKDIYLVYLLNEFVGQS------------- 294
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
I T+T+ E+ +R++ LL
Sbjct: 295 --------TIIFTRTVHET----------------------------------QRISFLL 312
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L +PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P
Sbjct: 313 RSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTD 372
Query: 625 SEIYIHRSGRTARANNEGLTVVLI 648
S+ Y+HR GRTARA G+ + +
Sbjct: 373 SKTYVHRVGRTARAGKSGVAISFV 396
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 36/62 (58%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S+ LILAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 120 SFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPG 179
Query: 1413 AL 1414
L
Sbjct: 180 RL 181
>gi|21593647|gb|AAM65614.1| replication protein A1-like [Arabidopsis thaliana]
Length = 456
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 153/480 (31%), Positives = 244/480 (50%), Gaps = 77/480 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + E +++A + G+K P+KIQ+ +P AL KD++G A+TGSGKT AF IPIL
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEG-KDVIGLAQTGSGKTGAFAIPILQ 69
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ + + E G ++ +A +L+PTRELA
Sbjct: 70 ALLEYVYD----SEPKKG-----------------------RRPDPAFFACVLSPTRELA 102
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
IQ+ G ++ A + GG+ +Q L K PH++VATPGRLW+ H++
Sbjct: 103 IQIAEQFEALGADISLRCAVLFGGIDRMQQTIALGKRPHVIVATPGRLWD-------HMS 155
Query: 950 E-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004
+ L + YLV+DE DR++ L IL+ E + R+TF+FSAT+T
Sbjct: 156 DTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE-----EIPRERKTFLFSATMT---- 206
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
KKV ++LQ +++P ++ K TL +
Sbjct: 207 ------------KKV-------RKLQRAC-LRNPVKIEAASKYSTVDTLKQQYRFVAAKY 246
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD YL Y + + P T ++F + + L +L L +P+ M Q +RL L++F
Sbjct: 247 KDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ +IL+ TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDES-VLSLIKKRIDLAKSIEYL---ESKIKKNRPDN 1239
E+ YI++ + KK LP++P +E VLSL+ +R+ AK + + ES +K R ++
Sbjct: 367 YELEWYIQIEKLIGKK--LPEYPAEEDEVLSLL-ERVAEAKKLSAMNMKESGGRKRRGED 423
Score = 174 bits (441), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 138/506 (27%), Positives = 217/506 (42%), Gaps = 152/506 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + E +++A + G+K P+KIQ+ +P AL KD++G A+TGSGKT AF IPIL
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEG-KDVIGLAQTGSGKTGAFAIPILQ 69
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ + + E G ++ +A +L+PTRELA
Sbjct: 70 ALLEYVYD----SEPKKG-----------------------RRPDPAFFACVLSPTRELA 102
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
IQ+ G ++ A + GG+ +Q L K PH++VATPGRLW+ H++
Sbjct: 103 IQIAEQFEALGADISLRCAVLFGGIDRMQQTIALGKRPHVIVATPGRLWD-------HMS 155
Query: 333 E-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
+ L + YLV+DE DR++ L IL+ + PR+
Sbjct: 156 DTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEI-------PRE------------- 195
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+TF+FSAT+T KKV ++LQ ++
Sbjct: 196 -------------RKTFLFSATMT----------------KKV-------RKLQRAC-LR 218
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
+P ++ K TL + KD YL Y + + P T
Sbjct: 219 NPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPEST---------------- 262
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
+ T+T ++ L +L R+L F
Sbjct: 263 -----SMIFTRTCDGTRFLA-----------LVL----RSLGF----------------- 285
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+P+ M Q +RL L++F+ +IL+ TDVA+RGLDIP ++ VI+Y +P S+
Sbjct: 286 --RAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKD 343
Query: 628 YIHRSGRTARANNEGLTVVLIESDEI 653
YIHR GRTARA G+ + L+ E+
Sbjct: 344 YIHRVGRTARAGRSGVGISLVNQYEL 369
Score = 53.5 bits (127), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ A +L+PTRELAIQ+ G ++ A + GG+ +Q L K PH++VATPG
Sbjct: 89 AFFACVLSPTRELAIQIAEQFEALGADISLRCAVLFGGIDRMQQTIALGKRPHVIVATPG 148
Query: 1413 AL 1414
L
Sbjct: 149 RL 150
Score = 45.8 bits (107), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES-VLSLIKKR 1297
+++HR GRTARA G+ + L+ E+ YI++ + KK LP++P +E VLSL+ +R
Sbjct: 343 DYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKK--LPEYPAEEDEVLSLL-ER 399
Query: 1298 IDLAKSIEYL---ESKIKKNRPDN 1318
+ AK + + ES +K R ++
Sbjct: 400 VAEAKKLSAMNMKESGGRKRRGED 423
>gi|444318027|ref|XP_004179671.1| hypothetical protein TBLA_0C03500 [Tetrapisispora blattae CBS 6284]
gi|387512712|emb|CCH60152.1| hypothetical protein TBLA_0C03500 [Tetrapisispora blattae CBS 6284]
Length = 506
Score = 224 bits (570), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 149/439 (33%), Positives = 228/439 (51%), Gaps = 74/439 (16%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+PE ++ A ++ PT IQS +P AL KDI+G A+TGSGKT AF IPIL NK
Sbjct: 94 VPE-LVEACKNLNYEKPTPIQSRAIPPALEG-KDIIGLAQTGSGKTAAFAIPIL----NK 147
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
L ED+ YA I+APTRELA Q++
Sbjct: 148 LW----EDQQ-------------------------------PYYACIMAPTRELAQQIKE 172
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ + L K+
Sbjct: 173 QFDSLGALMGVRSVCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTRGFSLRKL 230
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
+LV+DE DR+++ P +LDR+ +Q R T++FSAT+T S
Sbjct: 231 KFLVMDEADRLLDLEFGP----VLDRILKILPTQGRTTYLFSATMT-------------S 273
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K+ + ++ +P ++ K TL ++ ++ K++YL Y I
Sbjct: 274 KIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLIQTLMVVPGGLKNTYLIYLIN 322
Query: 1075 QHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+ G++++ F + ++ +RL+ L L+ + LH +NQ QR LD F+ SIL+A
Sbjct: 323 EFVGKSIIIFTRTKANAERLSLLSNTLEFDAIALHGDLNQNQRTGALDLFKAGKKSILIA 382
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L +++
Sbjct: 383 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 442
Query: 1194 NSLEKKVDLPDFPIDESVL 1212
+ L KK LP +D ++
Sbjct: 443 DVLGKK--LPKENVDRDII 459
Score = 119 bits (299), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 147/335 (43%), Gaps = 99/335 (29%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+PE ++ A ++ PT IQS +P AL KDI+G A+TGSGKT AF IPIL NK
Sbjct: 94 VPE-LVEACKNLNYEKPTPIQSRAIPPALEG-KDIIGLAQTGSGKTAAFAIPIL----NK 147
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
L ED+ YA I+APTRELA Q++
Sbjct: 148 LW----EDQQ-------------------------------PYYACIMAPTRELAQQIKE 172
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ + L K+
Sbjct: 173 QFDSLGALMGVRSVCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTRGFSLRKL 230
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
+LV+DE DR+++ P +LDR+
Sbjct: 231 KFLVMDEADRLLDLEFGP--------------------------------VLDRILKILP 258
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
+Q R T++FSAT+T SK K+ + ++ +P ++ K
Sbjct: 259 TQGRTTYLFSATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNK 294
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
TL ++ ++ K++YL Y I + G+++
Sbjct: 295 YQTVDTLIQTLMVVPGGLKNTYLIYLINEFVGKSI 329
Score = 109 bits (272), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKR 559
++ +P ++ K TL ++ ++ K++YL Y I + G++++ F + ++ +R
Sbjct: 282 SLTNPVKCAVSNKYQTVDTLIQTLMVVPGGLKNTYLIYLINEFVGKSIIIFTRTKANAER 341
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L+ L L+ + LH +NQ QR LD F+ SIL+ATDVAARGLDIP ++ VI+Y
Sbjct: 342 LSLLSNTLEFDAIALHGDLNQNQRTGALDLFKAGKKSILIATDVAARGLDIPSVDIVINY 401
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 402 DIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 437
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A I+APTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 155 YYACIMAPTRELAQQIKEQFDSLGALMGVRSVCIVGGMNMMDQARDLMRKPHIIIATPGR 214
Query: 1414 L 1414
L
Sbjct: 215 L 215
>gi|336471127|gb|EGO59288.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC 2508]
gi|350292214|gb|EGZ73409.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC 2509]
Length = 515
Score = 224 bits (570), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 232/455 (50%), Gaps = 79/455 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I + + A + G+K PT IQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 95 LGIVDALCEACERLGYKNPTPIQEQSIPLALQNR-DIIGIAETGSGKTAAFALPILQALL 153
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K P L+AL+LAPTRELA Q+
Sbjct: 154 DK---PA------------------------------------PLFALVLAPTRELAAQI 174
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A ++GGM Q L K PH++VATPGRL L H T+
Sbjct: 175 AQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRL-----LDHLEKTKGF 229
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + YLV+DE DR+++ P L+ IL + + R+TF+FSAT++ +++
Sbjct: 230 SLRSMQYLVMDEADRLLDMDFGPILEKILKFL-----PRERRTFLFSATMSSKVESL--- 281
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
++ S DP K+ + K TL + + H KD+YL
Sbjct: 282 -------QRASLRDPL-------------KVSVSSNKYATVSTLKSNYVFIPHMHKDTYL 321
Query: 1070 YYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + G+T++ F ++ +R+ LL L +PLH ++Q RL L++FR +
Sbjct: 322 VYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSR 381
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDIP ++ VI++ +P+ S+ Y+HR GRTARA G + ++ ++ +
Sbjct: 382 EILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEI 441
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
++++ +L K+D ++P+++ + + K R++ A+
Sbjct: 442 WLRIEAALGHKLD--EYPLEKDEVMVFKPRVEEAQ 474
Score = 182 bits (463), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 143/496 (28%), Positives = 211/496 (42%), Gaps = 159/496 (32%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I + + A + G+K PT IQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 95 LGIVDALCEACERLGYKNPTPIQEQSIPLALQNR-DIIGIAETGSGKTAAFALPILQALL 153
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K P L+AL+LAPTRELA Q+
Sbjct: 154 DK---PA------------------------------------PLFALVLAPTRELAAQI 174
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A ++GGM Q L K PH++VATPGRL L H T+
Sbjct: 175 AQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRL-----LDHLEKTKGF 229
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YLV+DE DR+++ P L+ IL + PR+
Sbjct: 230 SLRSMQYLVMDEADRLLDMDFGPILEKILKFL-------PRE------------------ 264
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+TF+FSAT++ +++ ++ S DP K+
Sbjct: 265 --------RRTFLFSATMSSKVES----------LQRASLRDPL-------------KVS 293
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
+ K TL + + H KD+YL Y + G+T+
Sbjct: 294 VSSNKYATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTI-------------------- 333
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
I T+T+ E+ +R+ LL L +
Sbjct: 334 -IIFTRTVLET----------------------------------QRIAILLRTLGMGAI 358
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLH ++Q RL L++FR + IL+ATDVAARGLDIP ++ VI++ +P+ S+ Y+HR
Sbjct: 359 PLHGGLSQSARLGALNKFRAGSREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRV 418
Query: 633 GRTARANNEGLTVVLI 648
GRTARA G + ++
Sbjct: 419 GRTARAGKSGHAISIV 434
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+LAPTRELA Q+ G ++ A ++GGM Q L K PH++VATPG L
Sbjct: 161 ALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRLL 220
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
K L +S++YL + D L DMD E +++ R L
Sbjct: 221 DHLEKTKGFSL-RSMQYL----VMDEADRLL-----DMDFGPILEKILKFLPRERRTFLF 270
Query: 1471 SKALVSKRKELQ 1482
S + SK + LQ
Sbjct: 271 SATMSSKVESLQ 282
>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
gi|74662479|sp|Q7RY59.1|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
Length = 515
Score = 224 bits (570), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 233/455 (51%), Gaps = 79/455 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I + + A + G+K PT IQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 95 LGIVDALCEACERLGYKNPTPIQEQSIPLALQNR-DIIGIAETGSGKTAAFALPILQALL 153
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K P L+AL+LAPTRELA Q+
Sbjct: 154 DK---PA------------------------------------PLFALVLAPTRELAAQI 174
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A ++GGM Q L K PH++VATPGRL L H T+
Sbjct: 175 AQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRL-----LDHLEKTKGF 229
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + YLV+DE DR+++ P L+ IL + + R+TF+FSAT++
Sbjct: 230 SLRSMQYLVMDEADRLLDMDFGPILEKILKFL-----PRERRTFLFSATMS--------- 275
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
SK + + + L+D L K+ + K TL + + H KD+YL
Sbjct: 276 ----SKVESLQRAS-----LRDPL-----KVSVSSNKYATVSTLKSNYVFIPHMHKDTYL 321
Query: 1070 YYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + G+T++ F ++ +R+ LL L +PLH ++Q RL L++FR +
Sbjct: 322 VYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSR 381
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDIP ++ VI++ +P+ S+ Y+HR GRTARA G + ++ ++ +
Sbjct: 382 EILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEI 441
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
++++ +L K+D ++P+++ + + K R++ A+
Sbjct: 442 WLRIEAALGHKLD--EYPLEKDEVMVFKPRVEEAQ 474
Score = 182 bits (463), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 145/496 (29%), Positives = 212/496 (42%), Gaps = 159/496 (32%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I + + A + G+K PT IQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 95 LGIVDALCEACERLGYKNPTPIQEQSIPLALQNR-DIIGIAETGSGKTAAFALPILQALL 153
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K P L+AL+LAPTRELA Q+
Sbjct: 154 DK---PA------------------------------------PLFALVLAPTRELAAQI 174
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A ++GGM Q L K PH++VATPGRL L H T+
Sbjct: 175 AQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRL-----LDHLEKTKGF 229
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YLV+DE DR+++ P L+ IL + PR+
Sbjct: 230 SLRSMQYLVMDEADRLLDMDFGPILEKILKFL-------PRE------------------ 264
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+TF+FSAT++ SK + + + L+D L K+
Sbjct: 265 --------RRTFLFSATMS-------------SKVESLQRAS-----LRDPL-----KVS 293
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
+ K TL + + H KD+YL Y + G+T+
Sbjct: 294 VSSNKYATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTI-------------------- 333
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
I T+T+ E+ +R+ LL L +
Sbjct: 334 -IIFTRTVLET----------------------------------QRIAILLRTLGMGAI 358
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLH ++Q RL L++FR + IL+ATDVAARGLDIP ++ VI++ +P+ S+ Y+HR
Sbjct: 359 PLHGGLSQSARLGALNKFRAGSREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRV 418
Query: 633 GRTARANNEGLTVVLI 648
GRTARA G + ++
Sbjct: 419 GRTARAGKSGHAISIV 434
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+LAPTRELA Q+ G ++ A ++GGM Q L K PH++VATPG L
Sbjct: 161 ALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRLL 220
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
K L +S++YL + D L DMD E +++ R L
Sbjct: 221 DHLEKTKGFSL-RSMQYL----VMDEADRLL-----DMDFGPILEKILKFLPRERRTFLF 270
Query: 1471 SKALVSKRKELQ 1482
S + SK + LQ
Sbjct: 271 SATMSSKVESLQ 282
>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
Length = 494
Score = 224 bits (570), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 150/449 (33%), Positives = 229/449 (51%), Gaps = 74/449 (16%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+PE +I A F PT IQ+ +P AL R DI+G A+TGSGKT AF IPIL
Sbjct: 80 VPE-LIEACKNLNFDKPTPIQARAIPPALEGR-DIIGLAQTGSGKTAAFAIPIL------ 131
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
N ED + YA +LAPTRELA Q +
Sbjct: 132 --NRLWED-------------------------------KQPYYACVLAPTRELAQQTKE 158
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ + L K+
Sbjct: 159 TFDSLGALMGVRSTCIVGGMNMMDQARELMRKPHIIIATPGRLMDHLE--NTKGFSLRKL 216
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
+LV+DE DR+++ P +LD++ +Q R T++FSAT+T S
Sbjct: 217 RFLVMDEADRLLDMEFGP----VLDKILKVIPTQDRTTYLFSATMT-------------S 259
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K+ + ++ P ++ K TL ++ ++ K++YL Y +
Sbjct: 260 KIDKLQRA-----------SLTEPVKCAVSNKYQTVDTLVQTLMVVPSGLKNTYLIYLLN 308
Query: 1075 QHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
++ G+T ++F + ++ +RL+ L +L+ + LH +NQ QR LD F+ SIL+A
Sbjct: 309 ENIGKTVIIFTRTKANAERLSALCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSILVA 368
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L +++
Sbjct: 369 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 428
Query: 1194 NSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
L KK LP D+ V+ ++ +D A
Sbjct: 429 EVLGKK--LPKENCDKEVVISLRDSVDKA 455
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 143/498 (28%), Positives = 211/498 (42%), Gaps = 154/498 (30%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+PE +I A F PT IQ+ +P AL R DI+G A+TGSGKT AF IPIL
Sbjct: 80 VPE-LIEACKNLNFDKPTPIQARAIPPALEGR-DIIGLAQTGSGKTAAFAIPIL------ 131
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
N ED + YA +LAPTRELA Q +
Sbjct: 132 --NRLWED-------------------------------KQPYYACVLAPTRELAQQTKE 158
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
G V+ C+VGGM+ Q R L + PHI++ATPGRL + ++ + L K+
Sbjct: 159 TFDSLGALMGVRSTCIVGGMNMMDQARELMRKPHIIIATPGRLMDHLE--NTKGFSLRKL 216
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
+LV+DE DR+++ P +LD++
Sbjct: 217 RFLVMDEADRLLDMEFGP--------------------------------VLDKILKVIP 244
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
+Q R T++FSAT+T SK K+ + ++ P ++ K
Sbjct: 245 TQDRTTYLFSATMT-------------SKIDKLQRA-----------SLTEPVKCAVSNK 280
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
TL ++ ++ K++YL Y + ++ G+T+ I T
Sbjct: 281 YQTVDTLVQTLMVVPSGLKNTYLIYLLNENIGKTV---------------------IIFT 319
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+T ++ R CN +L+ + LH
Sbjct: 320 RTKANAE---------------------RLSALCN-------------LLEFNATALHGD 345
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+NQ QR LD F+ SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTAR
Sbjct: 346 LNQNQRTGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTAR 405
Query: 638 ANNEGLTVVLIESDEIPL 655
A G ++ L+ ++ L
Sbjct: 406 AGRSGKSISLVSQYDLEL 423
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A +LAPTRELA Q + G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 141 YYACVLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMRKPHIIIATPGR 200
Query: 1414 L 1414
L
Sbjct: 201 L 201
>gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
Length = 474
Score = 224 bits (570), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 153/468 (32%), Positives = 231/468 (49%), Gaps = 89/468 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I +++ A G+KTPT IQ+ +P AL R D+VG AETGSGKT AF +PIL +
Sbjct: 54 LGIIDSLCDACTSLGYKTPTPIQAESIPLALQGR-DLVGLAETGSGKTAAFALPILQAL- 111
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+E P + L+LAPTRELA+Q+
Sbjct: 112 --MEKP------------------------------------QPYFGLVLAPTRELAVQI 133
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 134 SEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE--NTKGFSLR 191
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLK 1004
+ YLV+DE DR+++ P L IL +V E R+T++FSATL+ SL
Sbjct: 192 NLKYLVMDEADRLLDLDFGPVLDKIL-KVLPRE----RRTYLFSATLSSKVESLQRASLS 246
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
N L + +K + VS TL +S I H
Sbjct: 247 NPLRVSISSNKYQTVS-------------------------------TLLQSYIFIPHKY 275
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD YL + + + PG+T ++F +++ +RL+ LL L +PLH ++Q RL L +F
Sbjct: 276 KDIYLVHILNEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKF 335
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
R + IL+ATDVAARGLDIP ++ V+++ +P S+ YIHR GRTARA G + ++
Sbjct: 336 RSGSRDILVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
E+ ++ ++ +L K+ LP+ ++ + ++ R+ A+ + E K
Sbjct: 396 YEVEIWQRIEAALGKQ--LPEHKTEKEEVMVLSDRVGDAQRLAVTEMK 441
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 156/556 (28%), Positives = 227/556 (40%), Gaps = 173/556 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I +++ A G+KTPT IQ+ +P AL R D+VG AETGSGKT AF +PIL +
Sbjct: 54 LGIIDSLCDACTSLGYKTPTPIQAESIPLALQGR-DLVGLAETGSGKTAAFALPILQAL- 111
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+E P + L+LAPTRELA+Q+
Sbjct: 112 --MEKP------------------------------------QPYFGLVLAPTRELAVQI 133
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 134 SEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE--NTKGFSLR 191
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ P L IL + PR+
Sbjct: 192 NLKYLVMDEADRLLDLDFGPVLDKILKVL-------PRE--------------------- 223
Query: 396 ETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+T++FSATL+ SL N L + +K + VS
Sbjct: 224 -----RRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVS---------------- 262
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
TL +S I H KD YL + + + PG+T
Sbjct: 263 ---------------TLLQSYIFIPHKYKDIYLVHILNEFPGQT---------------- 291
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
I T+T+ E+ +RL+ LL L
Sbjct: 292 -----TIIFTRTVNET----------------------------------QRLSILLRAL 312
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+PLH ++Q RL L +FR + IL+ATDVAARGLDIP ++ V+++ +P S+
Sbjct: 313 GFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDIPAVDLVLNFDLPSDSKT 372
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIP----LKTKFNLQEEENNEEEERAEADKEKTEDI 683
YIHR GRTARA G + ++ E+ ++ Q E+ E+E ++ D
Sbjct: 373 YIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALGKQLPEHKTEKEEVMVLSDRVGDA 432
Query: 684 NVTVSSKKKKLKRKQN 699
++ K L K+
Sbjct: 433 QRLAVTEMKDLHEKRG 448
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ L+LAPTRELA+Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 118 YFGLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGR 177
Query: 1414 L 1414
L
Sbjct: 178 L 178
>gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis]
gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis]
Length = 518
Score = 224 bits (570), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 240/464 (51%), Gaps = 76/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + +T+ +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 71 WKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 129
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LE+P + +AL+L PTRELA
Sbjct: 130 AL---LESP------------------------------------QRYFALVLTPTRELA 150
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 151 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 210
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
I YLV+DE DR++ EL IL + + R+TF+FSAT+T
Sbjct: 211 K---AIKYLVMDEADRILNMDFEVELDKILKVL-----PRERRTFLFSATMT-------- 254
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K+LQ ++K P V+++ K + L +S + KD Y
Sbjct: 255 --------KKV-------KKLQRA-SLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVY 298
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC++ ++ + +L L + +PLH M+Q +RL L++F+ +N
Sbjct: 299 LVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKN 358
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + ++ +I
Sbjct: 359 RSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIE 418
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY ++ + L K+ LP + +E + +++R+ A+ LE K
Sbjct: 419 LYQRIEHLLGKQ--LPLYKCEEDEVMALQERVAEAQRTAKLELK 460
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 143/504 (28%), Positives = 220/504 (43%), Gaps = 156/504 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + +T+ +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 71 WKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 129
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LE+P + +AL+L PTRELA
Sbjct: 130 AL---LESP------------------------------------QRYFALVLTPTRELA 150
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 151 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 210
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
I YLV+DE DR++ EL IL + PR+
Sbjct: 211 K---AIKYLVMDEADRILNMDFEVELDKILKVL-------PRE----------------- 243
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+TF+FSAT+T KKV K+LQ ++K P
Sbjct: 244 ---------RRTFLFSATMT----------------KKV-------KKLQR-ASLKDPVK 270
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K + L +S + KD YL + + + G
Sbjct: 271 VEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAG---------------------- 308
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+S++ + C++ ++ + +L L +
Sbjct: 309 ---------------------NSFMIF------------CSTCNNTVKTALMLRALGLAA 335
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR
Sbjct: 336 IPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHR 395
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTARA G + ++ +I L
Sbjct: 396 VGRTARAGRSGKAITIVSQYDIEL 419
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG L
Sbjct: 140 ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 199
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
++K +L K+I+YL + D L +MD ++ + +++ R L
Sbjct: 200 DHLENMKGFNL-KAIKYL----VMDEADRIL-----NMDFEVELDKILKVLPRERRTFLF 249
Query: 1471 SKALVSKRKELQ 1482
S + K K+LQ
Sbjct: 250 SATMTKKVKKLQ 261
>gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
Length = 518
Score = 224 bits (570), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 240/464 (51%), Gaps = 76/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + +T+ +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 71 WKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 129
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LE+P + +AL+L PTRELA
Sbjct: 130 AL---LESP------------------------------------QRYFALVLTPTRELA 150
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 151 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 210
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
I YLV+DE DR++ EL IL + + R+TF+FSAT+T
Sbjct: 211 K---AIKYLVMDEADRILNMDFEVELDKILKVL-----PRERRTFLFSATMT-------- 254
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K+LQ ++K P V+++ K + L +S + KD Y
Sbjct: 255 --------KKV-------KKLQRA-SLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVY 298
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC++ ++ + +L L + +PLH M+Q +RL L++F+ +N
Sbjct: 299 LVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKN 358
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + ++ +I
Sbjct: 359 RSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIE 418
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY ++ + L K+ LP + +E + +++R+ A+ LE K
Sbjct: 419 LYQRIEHLLGKQ--LPLYKCEEDEVMALQERVAEAQRTAKLELK 460
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 143/504 (28%), Positives = 220/504 (43%), Gaps = 156/504 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + +T+ +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 71 WKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 129
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LE+P + +AL+L PTRELA
Sbjct: 130 AL---LESP------------------------------------QRYFALVLTPTRELA 150
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 151 FQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 210
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
I YLV+DE DR++ EL IL + PR+
Sbjct: 211 K---AIKYLVMDEADRILNMDFEVELDKILKVL-------PRE----------------- 243
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+TF+FSAT+T KKV K+LQ ++K P
Sbjct: 244 ---------RRTFLFSATMT----------------KKV-------KKLQR-ASLKDPVK 270
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K + L +S + KD YL + + + G
Sbjct: 271 VEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAG---------------------- 308
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+S++ + C++ ++ + +L L +
Sbjct: 309 ---------------------NSFMIF------------CSTCNNTVKTALMLRALGLAA 335
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR
Sbjct: 336 IPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHR 395
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTARA G + ++ +I L
Sbjct: 396 VGRTARAGRSGKAITIVSQYDIEL 419
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG L
Sbjct: 140 ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 199
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
++K +L K+I+YL + D L +MD ++ + +++ R L
Sbjct: 200 DHLENMKGFNL-KAIKYL----VMDEADRIL-----NMDFEVELDKILKVLPRERRTFLF 249
Query: 1471 SKALVSKRKELQ 1482
S + K K+LQ
Sbjct: 250 SATMTKKVKKLQ 261
>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
norvegicus]
Length = 455
Score = 224 bits (570), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 150/459 (32%), Positives = 235/459 (51%), Gaps = 76/459 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++ + + KK LP FP + + ++ +R+ A+ +E
Sbjct: 377 RIEHLIGKK--LPVFPTQDEEVMMLTERVSEAQRFARME 413
Score = 179 bits (455), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 40.4 bits (93), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDEEVMMLTERV 403
Query: 1299 DLAKSIEYLE 1308
A+ +E
Sbjct: 404 SEAQRFARME 413
>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
sapiens]
Length = 448
Score = 224 bits (570), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 240/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 22 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 79
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 80 --LETP------------------------------------QRLFALVLTPTRELAFQI 101
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 102 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 161
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + R+TF+FSAT+T
Sbjct: 162 ---KYLVMDEADRILNMDFETEVDKILK-----VNPRDRKTFLFSATMT----------- 202
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 203 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 249
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 250 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 309
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 310 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 369
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 370 RIEHLIGKK--LPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 420
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 214/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 22 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 79
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 80 --LETP------------------------------------QRLFALVLTPTRELAFQI 101
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 102 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 161
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL PR
Sbjct: 162 ---KYLVMDEADRILNMDFETEVDKILK-------VNPRD-------------------- 191
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 192 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 221
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 222 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 256
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 257 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 286
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 287 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 346
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 347 TARAGRSGKAITFVTQYDVEL 367
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 88 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 146
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 147 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVNPRDRKTFLF 197
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 198 SATMTKKVQKLQ 209
Score = 41.2 bits (95), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 339 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPGFPTQDDEVMMLTERV 396
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 397 AEAQRFARMELREHGEKKKRSRED 420
>gi|432107717|gb|ELK32877.1| Putative ATP-dependent RNA helicase DDX47 [Myotis davidii]
Length = 455
Score = 224 bits (570), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 150/459 (32%), Positives = 235/459 (51%), Gaps = 76/459 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQTAVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKDPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G ++ + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++ + + KK LP FP + + ++ +R+ A+ +E
Sbjct: 377 RIEHLIGKK--LPVFPTQDDEVMMLTERVTEAQRFARME 413
Score = 180 bits (456), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQTAVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKDPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G ++ + ++ L
Sbjct: 354 TARAGRSGKSITFVTQYDVEL 374
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PH+++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDSMSQSLALAKKPHVVIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 40.8 bits (94), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLTERV 403
Query: 1299 DLAKSIEYLE 1308
A+ +E
Sbjct: 404 TEAQRFARME 413
>gi|440910729|gb|ELR60491.1| Putative ATP-dependent RNA helicase DDX47 [Bos grunniens mutus]
Length = 457
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 88
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 89 --LETP------------------------------------QRLFALVLTPTRELAFQI 110
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 111 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 170
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 171 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 211
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 212 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 258
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 259 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 318
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 319 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 378
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 379 RIEHLIGKK--LPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRSRED 429
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 88
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 89 --LETP------------------------------------QRLFALVLTPTRELAFQI 110
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 111 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 170
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 171 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 200
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 201 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 230
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 231 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 265
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 266 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 295
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 296 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 355
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 356 TARAGRSGKAITFVTQYDVEL 376
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 97 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 155
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 156 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 206
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 207 SATMTKKVQKLQ 218
Score = 40.4 bits (93), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 348 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLTERV 405
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 406 TEAQRFARMELREHGEKKKRSRED 429
>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Ailuropoda melanoleuca]
Length = 455
Score = 223 bits (569), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 240/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP E + ++ +R+ A+ +E K K+ R D
Sbjct: 377 RIEHLIGKK--LPVFPTQEDEVMMLTERVTEAQRFARMELREHGEKKKRTRED 427
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 41.6 bits (96), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP E + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQEDEVMMLTERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K+ R D
Sbjct: 404 TEAQRFARMELREHGEKKKRTRED 427
>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
gi|109825481|sp|Q29S22.1|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
gi|296487253|tpg|DAA29366.1| TPA: probable ATP-dependent RNA helicase DDX47 [Bos taurus]
Length = 457
Score = 223 bits (569), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 88
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 89 --LETP------------------------------------QRLFALVLTPTRELAFQI 110
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 111 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 170
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 171 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 211
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 212 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 258
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 259 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 318
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 319 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 378
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 379 RIEHLIGKK--LPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRSRED 429
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 88
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 89 --LETP------------------------------------QRLFALVLTPTRELAFQI 110
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 111 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 170
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 171 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 200
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 201 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 230
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 231 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 265
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 266 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 295
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 296 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 355
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 356 TARAGRSGKAITFVTQYDVEL 376
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 97 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 155
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 156 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 206
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 207 SATMTKKVQKLQ 218
Score = 40.4 bits (93), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 348 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLTERV 405
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 406 TEAQRFARMELREHGEKKKRSRED 429
>gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Apis mellifera]
Length = 452
Score = 223 bits (569), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 235/464 (50%), Gaps = 76/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W I + + +A +K+PTKIQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 20 WKDLGIVDVLCKACEDLKWKSPTKIQYEAIPLALEG-KDIIGLAETGSGKTAAFALPILQ 78
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LENP + +ALIL PTRELA
Sbjct: 79 AL---LENP------------------------------------QRYFALILTPTRELA 99
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G VK A +VGGM Q IL K PHIL+ATPGRL + ++ F L
Sbjct: 100 FQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPHILIATPGRLVDHLENTKGFSL 159
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L +LV+DE DR++ E+ IL RV E R+T +FSAT+T
Sbjct: 160 RSL---KFLVMDEADRILNMDFEVEVDKIL-RVIPRE----RKTLLFSATMT-------- 203
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K + ++++P V+++ K + L + I KD Y
Sbjct: 204 --------KKVQKLQRA--------SLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVY 247
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC + ++ R LL L + +PLH M+Q +R+ L +F+ +N
Sbjct: 248 LVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKN 307
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++
Sbjct: 308 RSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVE 367
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY ++ + K+ LP + E + ++++R+ A+ I +E K
Sbjct: 368 LYQRIEQLISKQ--LPLYATQEEEVMVLEERVAEARRIVKMEMK 409
Score = 184 bits (468), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 162/560 (28%), Positives = 238/560 (42%), Gaps = 169/560 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W I + + +A +K+PTKIQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 20 WKDLGIVDVLCKACEDLKWKSPTKIQYEAIPLALEG-KDIIGLAETGSGKTAAFALPILQ 78
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LENP + +ALIL PTRELA
Sbjct: 79 AL---LENP------------------------------------QRYFALILTPTRELA 99
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G VK A +VGGM Q IL K PHIL+ATPGRL + ++ F L
Sbjct: 100 FQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPHILIATPGRLVDHLENTKGFSL 159
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L +LV+DE DR++ E+ IL + PR+
Sbjct: 160 RSL---KFLVMDEADRILNMDFEVEVDKILRVI-------PRE----------------- 192
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+T +FSAT+T KKV K + ++++P
Sbjct: 193 ---------RKTLLFSATMT----------------KKVQKLQRA--------SLRNPVK 219
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K + L + I KD YL + + + G
Sbjct: 220 VEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAG---------------------- 257
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+S++ + C + ++ R LL L +
Sbjct: 258 ---------------------NSFMIF------------CATCNNTVRTALLLRNLGFTA 284
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +R+ L +F+ +N SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR
Sbjct: 285 VPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHR 344
Query: 632 SGRTARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEADK-E 678
GRTARA G ++ + ++ L + + QEEE EER AEA +
Sbjct: 345 VGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQLPLYATQEEEVMVLEERVAEARRIV 404
Query: 679 KTEDINVTVSSKKKKLKRKQ 698
K E ++ S K K K++Q
Sbjct: 405 KMEMKDIEDSKKVGKRKKRQ 424
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 36/61 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ G VK A +VGGM Q IL K PHIL+ATPG
Sbjct: 87 YFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPHILIATPGR 146
Query: 1414 L 1414
L
Sbjct: 147 L 147
>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Callithrix jacchus]
Length = 455
Score = 223 bits (569), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEHLIGKK--LPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRSRED 427
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 40.4 bits (93), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLTERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 404 TEAQRFARMELREHGEKKKRSRED 427
>gi|328771154|gb|EGF81194.1| hypothetical protein BATDEDRAFT_87448 [Batrachochytrium dendrobatidis
JAM81]
Length = 445
Score = 223 bits (569), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 150/480 (31%), Positives = 243/480 (50%), Gaps = 80/480 (16%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
IPE +I A GFK P+ IQ +P AL R DI+G A+TGSGKT AF +PIL +
Sbjct: 19 IPE-LIEACTTLGFKKPSDIQCASIPVALTGR-DIIGLAQTGSGKTAAFALPILQTL--- 73
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
NP LYA ++APTRELA Q+
Sbjct: 74 FANP------------------------------------QHLYACVIAPTRELAFQISE 97
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYK 953
G V+ A +VGGM Q L+K PH+++ TPGRL + ++ F+L L
Sbjct: 98 QFEALGSVIGVRCAVIVGGMDMMSQSIALSKKPHVIICTPGRLVDHLENTKGFNLKHL-- 155
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 1013
YLV+DE DR+++ E++ +L + + R T++FSAT+T
Sbjct: 156 -KYLVMDEADRLLDLDFGAEIEKVLKVI-----PRERNTYLFSATMT------------- 196
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073
SK +K+ + ++ +P V++ K TL + + +K+ YL Y +
Sbjct: 197 SKVEKLQRA-----------SLVNPVKVEVATKYSTVDTLLQYYTFFPYKQKECYLTYLL 245
Query: 1074 LQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
+ G+T +VF + +S ++L +L L + LH + Q +RL L +F+ +IL+
Sbjct: 246 NELSGQTCIVFTLTCASTQKLALMLRNLGFEAVCLHGQLTQPKRLGALAKFKSGGRNILI 305
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDIPG++ VI+Y VP++S+ YIHR GRTARA G ++ L+ ++ Y ++
Sbjct: 306 ATDVASRGLDIPGVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSITLVTQYDVEWYQRI 365
Query: 1193 FNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANN 1252
++++KK+ F D+S + ++++R+ A +++ K +N H+ + R +
Sbjct: 366 EHAIQKKLTEYPFGHDKSAVLMLQERVSEAVRFAHMQLK-----DENLKHKGSKRGRGGD 420
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 144/497 (28%), Positives = 214/497 (43%), Gaps = 157/497 (31%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
IPE +I A GFK P+ IQ +P AL R DI+G A+TGSGKT AF +PIL +
Sbjct: 19 IPE-LIEACTTLGFKKPSDIQCASIPVALTGR-DIIGLAQTGSGKTAAFALPILQTL--- 73
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
NP LYA ++APTRELA Q+
Sbjct: 74 FANP------------------------------------QHLYACVIAPTRELAFQISE 97
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYK 336
G V+ A +VGGM Q L+K PH+++ TPGRL + ++ F+L L
Sbjct: 98 QFEALGSVIGVRCAVIVGGMDMMSQSIALSKKPHVIICTPGRLVDHLENTKGFNLKHL-- 155
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396
YLV+DE DR+++ E++ +L + PR+
Sbjct: 156 -KYLVMDEADRLLDLDFGAEIEKVLKVI-------PRE---------------------- 185
Query: 397 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 456
R T++FSAT+T SK +K+ + ++ +P V++
Sbjct: 186 ----RNTYLFSATMT-------------SKVEKLQRA-----------SLVNPVKVEVAT 217
Query: 457 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516
K TL + + +K+ YL Y LLN +L+ + I
Sbjct: 218 KYSTVDTLLQYYTFFPYKQKECYLTY----------------LLN-------ELSGQTCI 254
Query: 517 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA 576
TLT +S ++L +L L + LH
Sbjct: 255 VFTLT--------------------------------CASTQKLALMLRNLGFEAVCLHG 282
Query: 577 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 636
+ Q +RL L +F+ +IL+ATDVA+RGLDIPG++ VI+Y VP++S+ YIHR GRTA
Sbjct: 283 QLTQPKRLGALAKFKSGGRNILIATDVASRGLDIPGVDVVINYDVPQSSKDYIHRVGRTA 342
Query: 637 RANNEGLTVVLIESDEI 653
RA G ++ L+ ++
Sbjct: 343 RAGRSGKSITLVTQYDV 359
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
A ++APTRELA Q+ G V+ A +VGGM Q L+K PH+++ TPG L
Sbjct: 82 ACVIAPTRELAFQISEQFEALGSVIGVRCAVIVGGMDMMSQSIALSKKPHVIICTPGRLV 141
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
+ K +L K ++YL + D L D+D + E +++ R L
Sbjct: 142 DHLENTKGFNL-KHLKYL----VMDEADRLL-----DLDFGAEIEKVLKVIPRERNTYLF 191
Query: 1471 SKALVSKRKELQ 1482
S + SK ++LQ
Sbjct: 192 SATMTSKVEKLQ 203
Score = 43.1 bits (100), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 44/72 (61%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ ++ Y ++ ++++KK+ F D+S + ++++R+
Sbjct: 333 DYIHRVGRTARAGRSGKSITLVTQYDVEWYQRIEHAIQKKLTEYPFGHDKSAVLMLQERV 392
Query: 1299 DLAKSIEYLESK 1310
A +++ K
Sbjct: 393 SEAVRFAHMQLK 404
>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|74681080|sp|Q5B5E7.1|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
nidulans FGSC A4]
Length = 465
Score = 223 bits (569), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 230/464 (49%), Gaps = 80/464 (17%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ I + + A G+K PT IQS +P AL R D++G AETGSGKT AF +P+L +
Sbjct: 50 ELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGR-DVIGLAETGSGKTAAFALPMLQAL 108
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+E P L+ L+LAPTRELA Q
Sbjct: 109 ---MEAP------------------------------------QTLFGLVLAPTRELAYQ 129
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE- 950
+ G V+ A +VGGM Q L K PHI+VATPGRL L H T+
Sbjct: 130 ISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRL-----LDHLENTKG 184
Query: 951 --LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L + YL IDE DR+++ L I+ + T R T++FSAT+
Sbjct: 185 FSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRT-----RHTYLFSATM--------- 230
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
S KV S++R ++ +P V ++ K TL S I H K+ Y
Sbjct: 231 -------STKVE----SLQRA----SLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLY 275
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + + G++ ++F ++ +R+ +L L +PLH ++Q RL L +FR ++
Sbjct: 276 LVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRS 335
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDIP ++ V ++ +P S+ YIHR GRTARA G+ + + ++
Sbjct: 336 RDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVE 395
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+++++ ++L KK LP++ +++ + ++ +R+ A +E K
Sbjct: 396 VWLRIEHALSKK--LPEYQVEKDEVMVMSERVAEASRQATIEMK 437
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 144/497 (28%), Positives = 205/497 (41%), Gaps = 160/497 (32%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ I + + A G+K PT IQS +P AL R D++G AETGSGKT AF +P+L +
Sbjct: 50 ELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGR-DVIGLAETGSGKTAAFALPMLQAL 108
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+E P L+ L+LAPTRELA Q
Sbjct: 109 ---MEAP------------------------------------QTLFGLVLAPTRELAYQ 129
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE- 333
+ G V+ A +VGGM Q L K PHI+VATPGRL L H T+
Sbjct: 130 ISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRL-----LDHLENTKG 184
Query: 334 --LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L + YL IDE DR+++ + LD++ IL R
Sbjct: 185 FSLRNLKYLAIDEADRLLDM----DFGESLDKII---------------------RILPR 219
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R T++FSAT+ S KV S++R ++ +P
Sbjct: 220 T--------RHTYLFSATM----------------STKVE----SLQR----ASLSNPVR 247
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V ++ K TL S I H K+ YL Y + + G++
Sbjct: 248 VSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAGQS-------------------- 287
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
I T T+ E+ +R+ +L L
Sbjct: 288 -AIIFTTTVHET----------------------------------QRVAFMLRALGFGA 312
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V ++ +P S+ YIHR
Sbjct: 313 IPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHR 372
Query: 632 SGRTARANNEGLTVVLI 648
GRTARA G+ + +
Sbjct: 373 VGRTARAGKSGVAISFV 389
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG L
Sbjct: 117 GLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRL- 175
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKAL 1474
L ++ K K + + D L DMD + +I+ +R L S +
Sbjct: 176 LDHLENTKGFSLRNLKYLAIDEADRLL-----DMDFGESLDKIIRILPRTRHTYLFSATM 230
Query: 1475 VSKRKELQ 1482
+K + LQ
Sbjct: 231 STKVESLQ 238
Score = 40.4 bits (93), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
++HR GRTARA G+ + + ++ +++++ ++L KK LP++ +++ + ++ +R+
Sbjct: 368 TYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIEHALSKK--LPEYQVEKDEVMVMSERV 425
Query: 1299 DLAKSIEYLESK 1310
A +E K
Sbjct: 426 AEASRQATIEMK 437
>gi|344266640|ref|XP_003405388.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Loxodonta
africana]
Length = 461
Score = 223 bits (568), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 242/473 (51%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 35 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 92
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 93 --LETP------------------------------------QRLFALVLTPTRELAFQI 114
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 115 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 174
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 175 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 215
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 216 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 262
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + +VFC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 263 ILNELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQTKRLGSLNKFKAKARSI 322
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G ++ + ++ L+
Sbjct: 323 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQ 382
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 383 RIEHLIGKK--LPVFPTQDEEVMMLTERVAEAQRFARMELREHGEKKKRSRED 433
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 216/501 (43%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 35 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 92
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 93 --LETP------------------------------------QRLFALVLTPTRELAFQI 114
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 115 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 174
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 175 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 204
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 205 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 234
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 235 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 269
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 270 ------------------NSFMVF------------CSTCNNTQRTALLLRNLGFTAIPL 299
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 300 HGQMSQTKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 359
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G ++ + ++ L
Sbjct: 360 TARAGRSGKSITFVTQYDVEL 380
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 101 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 159
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 160 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 210
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 211 SATMTKKVQKLQ 222
Score = 40.8 bits (94), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 352 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKK--LPVFPTQDEEVMMLTERV 409
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 410 AEAQRFARMELREHGEKKKRSRED 433
>gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
Length = 474
Score = 223 bits (568), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 151/468 (32%), Positives = 230/468 (49%), Gaps = 89/468 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I +++ A G+KTPT IQ+ +P AL R D+VG AETGSGKT AF +PIL +
Sbjct: 54 LGIIDSLCDACTSLGYKTPTPIQAESIPLALQGR-DLVGLAETGSGKTAAFALPILQAL- 111
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+E P + L+LAPTRELA+Q+
Sbjct: 112 --MEKP------------------------------------QPYFGLVLAPTRELAVQI 133
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 134 TEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE--NTKGFSLR 191
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLK 1004
+ YLV+DE DR+++ P L IL + + R+T++FSATL+ SL
Sbjct: 192 NLKYLVMDEADRLLDLDFGPVLDKILKVL-----PRERRTYLFSATLSSKVESLQRASLS 246
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
N L + +K + VS TL +S I H
Sbjct: 247 NPLRVSISSNKYQTVS-------------------------------TLLQSYIFIPHKY 275
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD YL + + + PG+T ++F +++ +RL+ LL L +PLH ++Q RL L +F
Sbjct: 276 KDIYLVHILNEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKF 335
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
R + IL+ATDVAARGLDIP ++ V+++ +P S+ YIHR GRTARA G + ++
Sbjct: 336 RSGSRDILVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
E+ ++ ++ +L K+ LP+ ++ + ++ R+ A+ + E K
Sbjct: 396 YEVEIWQRIEAALGKQ--LPEHKTEKEEVMVLSDRVGDAQRLAVTEMK 441
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 156/556 (28%), Positives = 227/556 (40%), Gaps = 173/556 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I +++ A G+KTPT IQ+ +P AL R D+VG AETGSGKT AF +PIL +
Sbjct: 54 LGIIDSLCDACTSLGYKTPTPIQAESIPLALQGR-DLVGLAETGSGKTAAFALPILQAL- 111
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+E P + L+LAPTRELA+Q+
Sbjct: 112 --MEKP------------------------------------QPYFGLVLAPTRELAVQI 133
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 134 TEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE--NTKGFSLR 191
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ P L IL + PR+
Sbjct: 192 NLKYLVMDEADRLLDLDFGPVLDKILKVL-------PRE--------------------- 223
Query: 396 ETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+T++FSATL+ SL N L + +K + VS
Sbjct: 224 -----RRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVS---------------- 262
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
TL +S I H KD YL + + + PG+T
Sbjct: 263 ---------------TLLQSYIFIPHKYKDIYLVHILNEFPGQT---------------- 291
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
I T+T+ E+ +RL+ LL L
Sbjct: 292 -----TIIFTRTVNET----------------------------------QRLSILLRAL 312
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+PLH ++Q RL L +FR + IL+ATDVAARGLDIP ++ V+++ +P S+
Sbjct: 313 GFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDIPAVDLVLNFDLPSDSKT 372
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIP----LKTKFNLQEEENNEEEERAEADKEKTEDI 683
YIHR GRTARA G + ++ E+ ++ Q E+ E+E ++ D
Sbjct: 373 YIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALGKQLPEHKTEKEEVMVLSDRVGDA 432
Query: 684 NVTVSSKKKKLKRKQN 699
++ K L K+
Sbjct: 433 QRLAVTEMKDLHEKRG 448
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ L+LAPTRELA+Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 118 YFGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGR 177
Query: 1414 L 1414
L
Sbjct: 178 L 178
>gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
Length = 474
Score = 223 bits (568), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 151/468 (32%), Positives = 230/468 (49%), Gaps = 89/468 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I +++ A G+KTPT IQ+ +P AL R D+VG AETGSGKT AF +PIL +
Sbjct: 54 LGIIDSLCDACTSLGYKTPTPIQAESIPLALQGR-DLVGLAETGSGKTAAFALPILQAL- 111
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+E P + L+LAPTRELA+Q+
Sbjct: 112 --MEKP------------------------------------QPYFGLVLAPTRELAVQI 133
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 134 TEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE--NTKGFSLR 191
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLK 1004
+ YLV+DE DR+++ P L IL + + R+T++FSATL+ SL
Sbjct: 192 NLKYLVMDEADRLLDLDFGPVLDKILKVL-----PRERRTYLFSATLSSKVESLQRASLS 246
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
N L + +K + VS TL +S I H
Sbjct: 247 NPLRVSISSNKYQTVS-------------------------------TLLQSYIFIPHKY 275
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD YL + + + PG+T ++F +++ +RL+ LL L +PLH ++Q RL L +F
Sbjct: 276 KDIYLVHILNEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKF 335
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
R + IL+ATDVAARGLDIP ++ V+++ +P S+ YIHR GRTARA G + ++
Sbjct: 336 RSGSRDILVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
E+ ++ ++ +L K+ LP+ ++ + ++ R+ A+ + E K
Sbjct: 396 YEVEIWQRIEAALGKQ--LPEHKTEKEEVMVLSDRVGDAQRLAVTEMK 441
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 156/556 (28%), Positives = 227/556 (40%), Gaps = 173/556 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I +++ A G+KTPT IQ+ +P AL R D+VG AETGSGKT AF +PIL +
Sbjct: 54 LGIIDSLCDACTSLGYKTPTPIQAESIPLALQGR-DLVGLAETGSGKTAAFALPILQAL- 111
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+E P + L+LAPTRELA+Q+
Sbjct: 112 --MEKP------------------------------------QPYFGLVLAPTRELAVQI 133
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 134 TEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE--NTKGFSLR 191
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ P L IL + PR+
Sbjct: 192 NLKYLVMDEADRLLDLDFGPVLDKILKVL-------PRE--------------------- 223
Query: 396 ETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+T++FSATL+ SL N L + +K + VS
Sbjct: 224 -----RRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVS---------------- 262
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
TL +S I H KD YL + + + PG+T
Sbjct: 263 ---------------TLLQSYIFIPHKYKDIYLVHILNEFPGQT---------------- 291
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
I T+T+ E+ +RL+ LL L
Sbjct: 292 -----TIIFTRTVNET----------------------------------QRLSILLRAL 312
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+PLH ++Q RL L +FR + IL+ATDVAARGLDIP ++ V+++ +P S+
Sbjct: 313 GFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDIPAVDLVLNFDLPSDSKT 372
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIP----LKTKFNLQEEENNEEEERAEADKEKTEDI 683
YIHR GRTARA G + ++ E+ ++ Q E+ E+E ++ D
Sbjct: 373 YIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALGKQLPEHKTEKEEVMVLSDRVGDA 432
Query: 684 NVTVSSKKKKLKRKQN 699
++ K L K+
Sbjct: 433 QRLAVTEMKDLHEKRG 448
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ L+LAPTRELA+Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 118 YFGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGR 177
Query: 1414 L 1414
L
Sbjct: 178 L 178
>gi|410901863|ref|XP_003964414.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Takifugu
rubripes]
Length = 471
Score = 223 bits (568), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 155/472 (32%), Positives = 236/472 (50%), Gaps = 83/472 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E + A Q G+K+PTKIQ +P AL KD++G AETGSGKT AF +PIL +
Sbjct: 43 LGVTEVLCEACDQLGWKSPTKIQIEAVPVALQG-KDVIGLAETGSGKTGAFALPILQSL- 100
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
L +P +L+ L+L PTRELA Q+
Sbjct: 101 --LASP------------------------------------QRLHTLVLTPTRELAFQI 122
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G VK A +VGG+ Q +L K PHI++ATPGRL + H T+
Sbjct: 123 SEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPHIVIATPGRLID-----HLENTKGF 177
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + +LV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 178 TLRALKFLVMDEADRILNMDFETEVDKILKVI-----PRERRTFLFSATMT--------- 223
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
KKV K ++R +K P ++ K L + I KD YL
Sbjct: 224 -------KKVQK----LQRAA----LKDPVKCAVSTKYSTVDKLQQYYIFIPSKYKDCYL 268
Query: 1070 YYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ G + ++FC++ ++ +R+ LL L + + LH M+Q +RL L++F+ ++
Sbjct: 269 VSILNDLAGNSFIIFCSTCNNAQRVALLLRNLGITAISLHGQMSQNKRLGALNKFKSKSR 328
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
S+LLATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ + ++ L
Sbjct: 329 SVLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVEL 388
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK---IKKNRP 1237
+ ++ + + KK LP FP E + ++ +R+ A+ LE K K+ RP
Sbjct: 389 FQRIESLIGKK--LPAFPTQEEEVMMLVERVSEAQRFARLEMKEQGEKRKRP 438
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 114/259 (44%), Gaps = 81/259 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E + A Q G+K+PTKIQ +P AL KD++G AETGSGKT AF +PIL +
Sbjct: 43 LGVTEVLCEACDQLGWKSPTKIQIEAVPVALQG-KDVIGLAETGSGKTGAFALPILQSL- 100
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
L +P +L+ L+L PTRELA Q+
Sbjct: 101 --LASP------------------------------------QRLHTLVLTPTRELAFQI 122
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G VK A +VGG+ Q +L K PHI++ATPGRL + H T+
Sbjct: 123 SEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPHIVIATPGRLID-----HLENTKGF 177
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + +LV+DE DR++ E+ IL + PR+
Sbjct: 178 TLRALKFLVMDEADRILNMDFETEVDKILKVI-------PRE------------------ 212
Query: 393 TMTETSQPRQTFVFSATLT 411
R+TF+FSAT+T
Sbjct: 213 --------RRTFLFSATMT 223
Score = 109 bits (272), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 97/168 (57%), Gaps = 3/168 (1%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++Q L +K P ++ K L + I KD YL + G +
Sbjct: 221 TMTKKVQKLQRAALKDPVKCAVSTKYSTVDKLQQYYIFIPSKYKDCYLVSILNDLAGNSF 280
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC++ ++ +R+ LL L + + LH M+Q +RL L++F+ ++ S+LLATDVA+RG
Sbjct: 281 IIFCSTCNNAQRVALLLRNLGITAISLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRG 340
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDIP ++ VI+Y +P S+ YIHR GRTARA G ++ + ++ L
Sbjct: 341 LDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVEL 388
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA Q+ G VK A +VGG+ Q +L K PHI++ATPG L
Sbjct: 110 LVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPHIVIATPGRL 167
Score = 44.3 bits (103), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L+ ++ + + KK LP FP E + ++ +R+
Sbjct: 360 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIESLIGKK--LPAFPTQEEEVMMLVERV 417
Query: 1299 DLAKSIEYLESK---IKKNRP 1316
A+ LE K K+ RP
Sbjct: 418 SEAQRFARLEMKEQGEKRKRP 438
>gi|355683299|gb|AER97081.1| DEAD box polypeptide 47 [Mustela putorius furo]
Length = 454
Score = 223 bits (568), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 242/473 (51%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 28 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 85
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 86 --LETP------------------------------------QRLFALVLTPTRELAFQI 107
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 108 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNLRAL 167
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 168 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 208
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 209 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 255
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 256 ILNELAGNSFIIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 315
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 316 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 375
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R++ A+ +E K K++R D
Sbjct: 376 RIEHLIGKK--LPVFPTQDDEVMMLTERVNEAQRFARMELREHGEKKKRSRED 426
Score = 181 bits (458), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 28 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 85
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 86 --LETP------------------------------------QRLFALVLTPTRELAFQI 107
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 108 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNLRAL 167
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 168 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 197
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 198 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 227
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G +
Sbjct: 228 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNS----------------------- 264
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
FI+ FC++ ++ +R LL L + +PL
Sbjct: 265 ------------------------FII--------FCSTCNNTQRTALLLRNLGFTAIPL 292
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 293 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 352
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 353 TARAGRSGKAITFVTQYDVEL 373
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PH+++ATPG L
Sbjct: 94 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHVIIATPGRL- 152
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 153 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 203
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 204 SATMTKKVQKLQ 215
Score = 41.2 bits (95), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 345 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLTERV 402
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
+ A+ +E K K++R D
Sbjct: 403 NEAQRFARMELREHGEKKKRSRED 426
>gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
gi|143462228|sp|A1CR32.1|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
Length = 473
Score = 223 bits (568), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 152/493 (30%), Positives = 237/493 (48%), Gaps = 95/493 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I + + A G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 58 LGIIDQLCEACATMGYKAPTPIQAESIPLALQDR-DLIGLAETGSGKTAAFALPILQALM 116
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K ++ + L+LAPTRELA Q+
Sbjct: 117 DKPQS---------------------------------------FFGLVLAPTRELAFQI 137
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G V+ A +VGGM Q L K PHI+VATPGRL L H T+
Sbjct: 138 SQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRL-----LDHLENTKGF 192
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH-------- 1001
L + YLV+DE DR+++ P L IL + + R+TF+FSAT++
Sbjct: 193 SLRTLKYLVMDEADRLLDMDFGPLLDKILKIL-----PRERRTFLFSATMSSKVESLQRA 247
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
SL N L + +K + VS TL +S
Sbjct: 248 SLSNPLRVSVSSNKYQTVS-------------------------------TLLQSYRFIP 276
Query: 1062 HDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
H KD YL Y + + G++ ++F ++ +R++ LL L +PLH ++Q RL L
Sbjct: 277 HKHKDIYLVYLLNEFVGQSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGAL 336
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+FR ++ IL+ATDVAARGLDIP ++ V+++ +P S+ Y+HR GRTARA G+ +
Sbjct: 337 GKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISF 396
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNW 1240
+ ++ +++++ +L KK+D D DE + ++ +R+ A+ +E K +
Sbjct: 397 VTQYDVEIWLRIEGALGKKLDEYDLEKDE--VMVLAERVGEAQRQAIMEMKNFDEKKGTR 454
Query: 1241 LHRSGRTARANNE 1253
+ G+ R+ +E
Sbjct: 455 AKKFGKGKRSRDE 467
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 143/504 (28%), Positives = 206/504 (40%), Gaps = 175/504 (34%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I + + A G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 58 LGIIDQLCEACATMGYKAPTPIQAESIPLALQDR-DLIGLAETGSGKTAAFALPILQALM 116
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K ++ + L+LAPTRELA Q+
Sbjct: 117 DKPQS---------------------------------------FFGLVLAPTRELAFQI 137
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G V+ A +VGGM Q L K PHI+VATPGRL L H T+
Sbjct: 138 SQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRL-----LDHLENTKGF 192
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YLV+DE DR+++ P L IL + PR+
Sbjct: 193 SLRTLKYLVMDEADRLLDMDFGPLLDKILKIL-------PRE------------------ 227
Query: 393 TMTETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
R+TF+FSAT++ SL N L + +K + VS
Sbjct: 228 --------RRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVS------------- 266
Query: 445 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
TL +S H KD YL Y + + G++
Sbjct: 267 ------------------TLLQSYRFIPHKHKDIYLVYLLNEFVGQS------------- 295
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
I T+T+ E+ +R++ LL
Sbjct: 296 --------AIIFTRTVHET----------------------------------QRISFLL 313
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L +PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P
Sbjct: 314 RALGFGAIPLHGQLSQSSRLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTD 373
Query: 625 SEIYIHRSGRTARANNEGLTVVLI 648
S+ Y+HR GRTARA G+ + +
Sbjct: 374 SKTYVHRVGRTARAGKSGVAISFV 397
Score = 60.5 bits (145), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 36/62 (58%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S+ L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 121 SFFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPG 180
Query: 1413 AL 1414
L
Sbjct: 181 RL 182
>gi|400595961|gb|EJP63749.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 472
Score = 223 bits (568), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 234/464 (50%), Gaps = 81/464 (17%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
VQ+ + + I + + + G+ TPT IQ+ +P AL R D++G AETGSGKT AF
Sbjct: 47 VQVKTFKELGIVDALCESCESVGYTTPTSIQAKSIPVALQGR-DVIGLAETGSGKTAAFA 105
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
+P+L + LE P L+ L+LAP
Sbjct: 106 LPMLQAL---LEKP------------------------------------QPLFGLVLAP 126
Query: 885 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
TRELA Q+ G ++ A +VGG+ Q L K PH++VATPGRL +
Sbjct: 127 TRELAAQIGQTFEALGALISLRCAVIVGGLDMVPQAIALGKKPHVIVATPGRLVD----- 181
Query: 945 HFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001
H T+ L + YLV+DE DR+++ P + +L V + R+T++FSAT++
Sbjct: 182 HLEKTKGFSLRTLKYLVMDEADRLLDMDFGPSIDKLLKFV-----PRERRTYLFSATMSS 236
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILC 1060
++ S++R +++ P V ++ K TL + +
Sbjct: 237 RVE--------------------SLQRA----SLRDPVRVSVSSSKYQTVSTLLQHYVFI 272
Query: 1061 KHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
H KD+YL + I + G++ +VF ++ +R+ LL L +PLH ++Q RL
Sbjct: 273 PHIRKDTYLIHIINEFAGKSCIVFTRTVYETQRVAILLRTLGFGAIPLHGQLSQSARLGA 332
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
L++FR IL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA G+ +
Sbjct: 333 LNKFRGGTREILVATDVAARGLDIPKVDIVLNYDIPSDSKTYIHRVGRTARAGKSGVAIS 392
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
L+ ++ L+ ++ +L KK+D +FP ++ + + R++ A+
Sbjct: 393 LVTQYDLELFTRIEAALGKKLD--EFPTEKEEVMTFQARVEEAQ 434
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 143/515 (27%), Positives = 220/515 (42%), Gaps = 161/515 (31%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
VQ+ + + I + + + G+ TPT IQ+ +P AL R D++G AETGSGKT AF
Sbjct: 47 VQVKTFKELGIVDALCESCESVGYTTPTSIQAKSIPVALQGR-DVIGLAETGSGKTAAFA 105
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
+P+L + LE P L+ L+LAP
Sbjct: 106 LPMLQAL---LEKP------------------------------------QPLFGLVLAP 126
Query: 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
TRELA Q+ G ++ A +VGG+ Q L K PH++VATPGRL +
Sbjct: 127 TRELAAQIGQTFEALGALISLRCAVIVGGLDMVPQAIALGKKPHVIVATPGRLVD----- 181
Query: 328 HFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
H T+ L + YLV+DE DR+++ P + +L V PR+
Sbjct: 182 HLEKTKGFSLRTLKYLVMDEADRLLDMDFGPSIDKLLKFV-------PRE---------- 224
Query: 385 LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
R+T++FSAT++ ++ S++R
Sbjct: 225 ----------------RRTYLFSATMSSRVE--------------------SLQR----A 244
Query: 445 NIKSPKIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
+++ P V + + K TL + + H KD+YL + I + G++ C
Sbjct: 245 SLRDPVRVSVSSSKYQTVSTLLQHYVFIPHIRKDTYLIHIINEFAGKS-C---------- 293
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
I T+T+ E+ +R+ L
Sbjct: 294 ----------IVFTRTVYET----------------------------------QRVAIL 309
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
L L +PLH ++Q RL L++FR IL+ATDVAARGLDIP ++ V++Y +P
Sbjct: 310 LRTLGFGAIPLHGQLSQSARLGALNKFRGGTREILVATDVAARGLDIPKVDIVLNYDIPS 369
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK 658
S+ YIHR GRTARA G+ + L+ ++ L T+
Sbjct: 370 DSKTYIHRVGRTARAGKSGVAISLVTQYDLELFTR 404
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
L+LAPTRELA Q+ G ++ A +VGG+ Q L K PH++VATPG L
Sbjct: 121 GLVLAPTRELAAQIGQTFEALGALISLRCAVIVGGLDMVPQAIALGKKPHVIVATPGRLV 180
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
K L ++++YL + D L DMD + L++ R L
Sbjct: 181 DHLEKTKGFSL-RTLKYL----VMDEADRLL-----DMDFGPSIDKLLKFVPRERRTYLF 230
Query: 1471 SKALVSKRKELQ 1482
S + S+ + LQ
Sbjct: 231 SATMSSRVESLQ 242
Score = 42.0 bits (97), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
++HR GRTARA G+ + L+ ++ L+ ++ +L KK+D +FP ++ + + R+
Sbjct: 373 TYIHRVGRTARAGKSGVAISLVTQYDLELFTRIEAALGKKLD--EFPTEKEEVMTFQARV 430
Query: 1299 DLAK 1302
+ A+
Sbjct: 431 EEAQ 434
>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
Length = 525
Score = 223 bits (568), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 239/464 (51%), Gaps = 76/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + +T+ +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 73 WKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 131
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LENP + +AL+L PTRELA
Sbjct: 132 AL---LENP------------------------------------QRFFALVLTPTRELA 152
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 153 FQIGEQFEALGSSIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 212
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
I YLV+DE DR++ EL IL + + R+TF+FSAT+T
Sbjct: 213 K---SIKYLVMDEADRILNMDFEVELDKILKVL-----PRERRTFLFSATMT-------- 256
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKV K+LQ ++K P V+++ K + L + + KD Y
Sbjct: 257 --------KKV-------KKLQRA-SLKDPVKVEVSNKYQTVEQLQQYYLFIPVKYKDVY 300
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + G + ++FC++ ++ + +L L + +PLH M+Q +RL L++F+ ++
Sbjct: 301 LVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKD 360
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + L+ +I
Sbjct: 361 RSILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIE 420
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY ++ + L K+ LP + +E + +++R+ A+ LE K
Sbjct: 421 LYQRIEHLLGKQ--LPLYKCEEDEVMALQERVAEAQRTAKLELK 462
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 145/504 (28%), Positives = 215/504 (42%), Gaps = 156/504 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + +T+ +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 73 WKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 131
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LENP + +AL+L PTRELA
Sbjct: 132 AL---LENP------------------------------------QRFFALVLTPTRELA 152
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G +K VVGGM Q L K PHI++ATPGRL + ++ + F+L
Sbjct: 153 FQIGEQFEALGSSIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL 212
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
I YLV+DE DR++ EL IL + PR+
Sbjct: 213 K---SIKYLVMDEADRILNMDFEVELDKILKVL-------PRE----------------- 245
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+TF+FSAT+T KKV K+LQ ++K P
Sbjct: 246 ---------RRTFLFSATMT----------------KKV-------KKLQR-ASLKDPVK 272
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K + L + + KD YL + + + G +
Sbjct: 273 VEVSNKYQTVEQLQQYYLFIPVKYKDVYLVHILNELAGNSFM------------------ 314
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
I C CN+ + +L L +
Sbjct: 315 -------------IFCST---------------------CNNTV---KTALMLRALGLAA 337
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL L++F+ ++ SIL++TDVA+RGLDIP ++ V+++ +P S+ YIHR
Sbjct: 338 IPLHGQMSQNKRLAALNKFKAKDRSILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHR 397
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTARA G + L+ +I L
Sbjct: 398 VGRTARAGRSGKAITLVSQYDIEL 421
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG L
Sbjct: 142 ALVLTPTRELAFQIGEQFEALGSSIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 201
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
++K +L KSI+YL + D L +MD ++ + +++ R L
Sbjct: 202 DHLENMKGFNL-KSIKYL----VMDEADRIL-----NMDFEVELDKILKVLPRERRTFLF 251
Query: 1471 SKALVSKRKELQ 1482
S + K K+LQ
Sbjct: 252 SATMTKKVKKLQ 263
>gi|348689923|gb|EGZ29737.1| hypothetical protein PHYSODRAFT_309945 [Phytophthora sojae]
Length = 482
Score = 223 bits (568), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 153/476 (32%), Positives = 242/476 (50%), Gaps = 76/476 (15%)
Query: 759 NNEDM--FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
+NED F + + + I A+ G+ P+KIQ +P L A KDI+G AETG
Sbjct: 20 HNEDGEGFRGSKSFQELGVDAAICEAIEAVGWSQPSKIQQQAIPHGL-AGKDIIGLAETG 78
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
SGKT AF IPIL + L NP +
Sbjct: 79 SGKTGAFVIPILQSL---LRNP------------------------------------QR 99
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
LYAL+LAPTRELA Q+ G +K ACVVGG+ +Q L + PH+++ATPGR
Sbjct: 100 LYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGR 159
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + L + +LV+DE DRM+ S F E N + ++ E R T++FS
Sbjct: 160 LVDHLE--NTKGFSLRTMKFLVLDEADRML-SMDFEEEINQIVQLMPAE----RNTYLFS 212
Query: 997 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
AT+T SK +K+ + ++K P V++T K +TL +
Sbjct: 213 ATMT-------------SKVRKLQRA-----------SLKDPVKVEITHKFATPETLKQH 248
Query: 1057 KILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
+ KD YL Y + + G++ L+F ++ + +++T +L L + LH M Q
Sbjct: 249 YLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPS 308
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
RL L++F+ + ++L+ TDVA+RGLDIP ++ VI+Y +P + YIHR GRTARA G
Sbjct: 309 RLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAG 368
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ + + ++ LY ++ + L K+D +P +E + ++ +R++ A+ I +E K
Sbjct: 369 VAISFVTQYDVELYQRIEHLLGTKLD--AYPCEEETVLVMSERVNEAQRIATIEMK 422
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 155/574 (27%), Positives = 238/574 (41%), Gaps = 166/574 (28%)
Query: 142 NNEDM--FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
+NED F + + + I A+ G+ P+KIQ +P L A KDI+G AETG
Sbjct: 20 HNEDGEGFRGSKSFQELGVDAAICEAIEAVGWSQPSKIQQQAIPHGL-AGKDIIGLAETG 78
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKT AF IPIL + L NP +
Sbjct: 79 SGKTGAFVIPILQSL---LRNP------------------------------------QR 99
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
LYAL+LAPTRELA Q+ G +K ACVVGG+ +Q L + PH+++ATPGR
Sbjct: 100 LYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGR 159
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ + L + +LV+DE DRM+ S F E E +Q Q M
Sbjct: 160 LVDHLE--NTKGFSLRTMKFLVLDEADRML-SMDFEE-----------EINQIVQLM--- 202
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
R T++FSAT+T SK +K+ +
Sbjct: 203 ------------------PAERNTYLFSATMT-------------SKVRKLQRA------ 225
Query: 440 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499
++K P V++T K +TL + + KD YL Y + + G Q +
Sbjct: 226 -----SLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAG-------QSV 273
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKR 559
L S + T+K+ + + +C H +
Sbjct: 274 LIFAS--TCNGTQKVTLMLRNLGFQAICLHGQ---------------------------- 303
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
M Q RL L++F+ + ++L+ TDVA+RGLDIP ++ VI+Y
Sbjct: 304 ------------------MPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINY 345
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEK 679
+P + YIHR GRTARA G+ + + T+++++ + E + D
Sbjct: 346 DIPTHGKDYIHRVGRTARAGRAGVAISFV--------TQYDVELYQRIEHLLGTKLDAYP 397
Query: 680 TEDINVTVSSKKKKLKRKQNPSQVEVSELSANTN 713
E+ V V S +++ Q + +E+ E AN +
Sbjct: 398 CEEETVLVMS--ERVNEAQRIATIEMKESVANGS 429
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+LAPTRELA Q+ G +K ACVVGG+ +Q L + PH+++ATPG L
Sbjct: 102 ALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRL- 160
Query: 1416 LKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDMDIIIDDE----NLIQPKANSRENALM 1470
+++LE +K R +L D + +D E ++Q R L
Sbjct: 161 ---------VDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAERNTYLF 211
Query: 1471 SKALVSKRKELQ 1482
S + SK ++LQ
Sbjct: 212 SATMTSKVRKLQ 223
Score = 45.1 bits (105), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G+ + + ++ LY ++ + L K+D +P +E + ++ +R+
Sbjct: 353 DYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLD--AYPCEEETVLVMSERV 410
Query: 1299 DLAKSIEYLESK 1310
+ A+ I +E K
Sbjct: 411 NEAQRIATIEMK 422
>gi|354478220|ref|XP_003501313.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Cricetulus
griseus]
Length = 455
Score = 223 bits (568), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 150/459 (32%), Positives = 235/459 (51%), Gaps = 76/459 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++ + + KK LP FP + + ++ +R+ A+ +E
Sbjct: 377 RIEHLIGKK--LPVFPTQDEEVMMLTERVSEAQRFARME 413
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 154/553 (27%), Positives = 235/553 (42%), Gaps = 168/553 (30%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEERAEADKEKTEDI 683
TARA G + + ++ L + F Q+EE ER ++ ++ +
Sbjct: 354 TARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDEEVMMLTERV-SEAQRFARM 412
Query: 684 NVTVSSKKKKLKR 696
+ +KKK KR
Sbjct: 413 ELREHGEKKKRKR 425
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPHIVIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 40.8 bits (94), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDEEVMMLTERV 403
Query: 1299 DLAKSIEYLESKIKKNRPDNWLEKAAKDMD 1328
A+ +E + + E A D D
Sbjct: 404 SEAQRFARMELREHGEKKKRKREDAGDDDD 433
>gi|452839340|gb|EME41279.1| hypothetical protein DOTSEDRAFT_73630 [Dothistroma septosporum NZE10]
Length = 513
Score = 223 bits (568), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 230/464 (49%), Gaps = 72/464 (15%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + + + A GF PT IQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 85 FAELGVIDQLCDACANLGFTKPTAIQKESIPIALEG-KDIIGLAETGSGKTAAFALPILQ 143
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ + P E + L+LAPTRELA
Sbjct: 144 AL---MAAPQHEQHK---------------------------------FGLVLAPTRELA 167
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ G V+ A +VGGM Q LNK PHI+VATPGRL + ++ +
Sbjct: 168 YQISQQFEALGSLINVRCAVLVGGMDMVPQAIALNKNPHIVVATPGRLLDHLE--NTKGF 225
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ + YLV+DE DR+++ P ILD++ S+ R+T +FSAT++ L N L
Sbjct: 226 SMRSLKYLVMDEADRLLDLDFGP----ILDKILQVLPSK-RRTMLFSATMSTKLNN---L 277
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT-KTLTESKILCKHDEKDSY 1068
+ +++P V ++ T K L + I H KD Y
Sbjct: 278 TRAA---------------------LQNPVRVSISSSSYQTVKNLMQRYIFIPHKFKDIY 316
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + + G+T +VF +I+ +R+ LL L S +PLH MNQ RL L++FR +
Sbjct: 317 LVYLLNEFAGQTCIVFTRTINETQRIAFLLRALGRSAIPLHGQMNQSARLGALNKFRGGS 376
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDIP ++ V+++ +P S+ Y+HR GRTARA G+ + ++ +I
Sbjct: 377 REILVATDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIE 436
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+Y ++ +L KK+D ++ + + + R+ A+ I E K
Sbjct: 437 IYQRIEKALGKKLD--EYAAERDEVMVFAPRVAEAQRIAITEMK 478
Score = 179 bits (455), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 144/502 (28%), Positives = 210/502 (41%), Gaps = 152/502 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + + + A GF PT IQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 85 FAELGVIDQLCDACANLGFTKPTAIQKESIPIALEG-KDIIGLAETGSGKTAAFALPILQ 143
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ + P E + L+LAPTRELA
Sbjct: 144 AL---MAAPQHEQHK---------------------------------FGLVLAPTRELA 167
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ G V+ A +VGGM Q LNK PHI+VATPGRL + ++ +
Sbjct: 168 YQISQQFEALGSLINVRCAVLVGGMDMVPQAIALNKNPHIVVATPGRLLDHLE--NTKGF 225
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ + YLV+DE DR+++ P ILD++ S+
Sbjct: 226 SMRSLKYLVMDEADRLLDLDFGP----ILDKILQVLPSK--------------------- 260
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+T +FSAT++ L NL + +++P V
Sbjct: 261 --------RRTMLFSATMSTKLN---NLTRAA---------------------LQNPVRV 288
Query: 453 DLTEKIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
++ T K L + I H KD YL Y + + G+T C
Sbjct: 289 SISSSSYQTVKNLMQRYIFIPHKFKDIYLVYLLNEFAGQT-C------------------ 329
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
I T+T+ E+ +R+ LL L S
Sbjct: 330 --IVFTRTINET----------------------------------QRIAFLLRALGRSA 353
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH MNQ RL L++FR + IL+ATDVAARGLDIP ++ V+++ +P S+ Y+HR
Sbjct: 354 IPLHGQMNQSARLGALNKFRGGSREILVATDVAARGLDIPSVDLVLNFDLPPDSKTYVHR 413
Query: 632 SGRTARANNEGLTVVLIESDEI 653
GRTARA G+ + ++ +I
Sbjct: 414 VGRTARAGKSGVAISVVTQYDI 435
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G V+ A +VGGM Q LNK PHI+VATPG L
Sbjct: 157 GLVLAPTRELAYQISQQFEALGSLINVRCAVLVGGMDMVPQAIALNKNPHIVVATPGRL 215
>gi|426225486|ref|XP_004006897.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1 [Ovis
aries]
Length = 457
Score = 223 bits (568), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 153/474 (32%), Positives = 241/474 (50%), Gaps = 81/474 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 88
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 89 --LETP------------------------------------QRLFALVLTPTRELAFQI 110
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 111 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLENTKGFNLRAL 170
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 171 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 211
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 212 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 258
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 259 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 318
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 319 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 378
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPDN 1239
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 379 RIEHLIGKK--LPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRSREDT 430
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 88
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 89 --LETP------------------------------------QRLFALVLTPTRELAFQI 110
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 111 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLENTKGFNLRAL 170
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 171 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 200
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 201 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 230
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 231 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 265
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 266 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 295
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 296 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 355
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 356 TARAGRSGKAITFVTQYDVEL 376
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PH+++ATPG L
Sbjct: 97 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHVVIATPGRL- 155
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 156 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 206
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 207 SATMTKKVQKLQ 218
Score = 40.8 bits (94), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 348 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLTERV 405
Query: 1299 DLAKSIEYLE-----SKIKKNRPDN 1318
A+ +E K K++R D
Sbjct: 406 TEAQRFARMELREHGEKKKRSREDT 430
>gi|398406547|ref|XP_003854739.1| RNA-dependent ATPase [Zymoseptoria tritici IPO323]
gi|339474623|gb|EGP89715.1| hypothetical protein MYCGRDRAFT_84402 [Zymoseptoria tritici IPO323]
Length = 446
Score = 223 bits (567), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 229/464 (49%), Gaps = 75/464 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + +++ A GF PT IQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 38 FADLGVVDSLCEACTALGFTKPTAIQREAIPIALEG-KDIIGLAETGSGKTAAFALPILQ 96
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+++K + ++ L+LAPTRELA
Sbjct: 97 ELLDKPQ---------------------------------------PMFGLVLAPTRELA 117
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G V+ A +VGGM Q L K PHI+VATPGRL + ++ F L
Sbjct: 118 YQISQQFEALGSLISVRCAVIVGGMDMVPQAIALAKKPHIVVATPGRLLDHLENTKGFSL 177
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+L YLV+DE DR+++ P ILD++ + R+T +FSAT++ L N
Sbjct: 178 RQL---KYLVMDEADRLLDLDFGP----ILDKIFQV-LPRERRTMLFSATMSTKLNNLT- 228
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
+ + KVS S + +++L+ + I H KD Y
Sbjct: 229 -RAALQQPVKVSISSSSYQTVKNLM---------------------QRYIFIPHKFKDIY 266
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + + G+T +VF +I+ R+ LL L S +PLH MNQ RL L++FR +
Sbjct: 267 LVYLLNEFAGQTCIVFTRTINETARIAFLLRALGRSAIPLHGQMNQSARLGALNKFRGGH 326
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDIP ++ V+++ +P S+ Y+HR GRTARA G+ + ++ +I
Sbjct: 327 RDILVATDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIE 386
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+Y ++ +L KK L + P + + + R+ A+ I E K
Sbjct: 387 IYQRIEKALGKK--LEEHPTERDEVMVFAPRVGEAQRIAVTEMK 428
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 145/502 (28%), Positives = 212/502 (42%), Gaps = 155/502 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + +++ A GF PT IQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 38 FADLGVVDSLCEACTALGFTKPTAIQREAIPIALEG-KDIIGLAETGSGKTAAFALPILQ 96
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+++K + ++ L+LAPTRELA
Sbjct: 97 ELLDKPQ---------------------------------------PMFGLVLAPTRELA 117
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G V+ A +VGGM Q L K PHI+VATPGRL + ++ F L
Sbjct: 118 YQISQQFEALGSLISVRCAVIVGGMDMVPQAIALAKKPHIVVATPGRLLDHLENTKGFSL 177
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+L YLV+DE DR+++ P ILD++ PR+
Sbjct: 178 RQL---KYLVMDEADRLLDLDFGP----ILDKIFQV---LPRE----------------- 210
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+T +FSAT++ L N + + KVS S + +++L+
Sbjct: 211 ---------RRTMLFSATMSTKLNNL--TRAALQQPVKVSISSSSYQTVKNLM------- 252
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
+ I H KD YL Y + + G+T C
Sbjct: 253 --------------QRYIFIPHKFKDIYLVYLLNEFAGQT-C------------------ 279
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
I T+T+ E+ R+ LL L S
Sbjct: 280 --IVFTRTINET----------------------------------ARIAFLLRALGRSA 303
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH MNQ RL L++FR + IL+ATDVAARGLDIP ++ V+++ +P S+ Y+HR
Sbjct: 304 IPLHGQMNQSARLGALNKFRGGHRDILVATDVAARGLDIPSVDLVLNFDLPPDSKTYVHR 363
Query: 632 SGRTARANNEGLTVVLIESDEI 653
GRTARA G+ + ++ +I
Sbjct: 364 VGRTARAGKSGVAISVVTQYDI 385
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG L
Sbjct: 107 GLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVPQAIALAKKPHIVVATPGRL 165
>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
leucogenys]
Length = 455
Score = 223 bits (567), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 240/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEYLIGKK--LPVFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 427
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PH+++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHVIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
>gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL 181]
gi|143462290|sp|A1D405.1|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL 181]
Length = 472
Score = 223 bits (567), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 150/493 (30%), Positives = 238/493 (48%), Gaps = 95/493 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I + + A G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 57 LGIIDQLCEACETMGYKAPTPIQAESIPLALQGR-DLIGLAETGSGKTAAFALPILQALM 115
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
K ++ + LILAPTRELA Q+
Sbjct: 116 EKPQS---------------------------------------FFGLILAPTRELAFQI 136
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G V+ A +VGGM Q L K PHI+VATPGRL L H T+
Sbjct: 137 SKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRL-----LDHLENTKGF 191
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH-------- 1001
L + YLV+DE DR+++ P L IL + + R+TF+FSAT++
Sbjct: 192 SLRTLKYLVMDEADRLLDMDFGPLLDKILKVL-----PRERRTFLFSATMSSKVESLQRA 246
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
SL N L + +K + VS TL +S +
Sbjct: 247 SLSNPLRVSVSSNKYQTVS-------------------------------TLLQSYLFLP 275
Query: 1062 HDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
H KD YL Y + + G++ ++F ++ +R++ LL L +PLH ++Q RL L
Sbjct: 276 HKHKDIYLVYLLNEFVGQSAIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGAL 335
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+FR ++ IL+ATDVAARGLDIP ++ V+++ +P S+ Y+HR GRTARA G+ +
Sbjct: 336 GKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISF 395
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNW 1240
+ ++ +++++ +L KK L ++ +++ + ++ +R+ A+ +E K +
Sbjct: 396 VTQYDVEIWLRIEGALGKK--LKEYELEKDEVMVLAERVGEAQRQAIVEMKNFDEKRGTK 453
Query: 1241 LHRSGRTARANNE 1253
+ G+ R+ +E
Sbjct: 454 AKKFGKGKRSRDE 466
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 144/504 (28%), Positives = 206/504 (40%), Gaps = 175/504 (34%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I + + A G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 57 LGIIDQLCEACETMGYKAPTPIQAESIPLALQGR-DLIGLAETGSGKTAAFALPILQALM 115
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
K ++ + LILAPTRELA Q+
Sbjct: 116 EKPQS---------------------------------------FFGLILAPTRELAFQI 136
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G V+ A +VGGM Q L K PHI+VATPGRL L H T+
Sbjct: 137 SKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRL-----LDHLENTKGF 191
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YLV+DE DR+++ P L IL + PR+
Sbjct: 192 SLRTLKYLVMDEADRLLDMDFGPLLDKILKVL-------PRE------------------ 226
Query: 393 TMTETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
R+TF+FSAT++ SL N L + +K + VS
Sbjct: 227 --------RRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVS------------- 265
Query: 445 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
TL +S + H KD YL Y + + G++
Sbjct: 266 ------------------TLLQSYLFLPHKHKDIYLVYLLNEFVGQS------------- 294
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
I T+T+ E+ +R++ LL
Sbjct: 295 --------AIIFTRTVHET----------------------------------QRISFLL 312
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L +PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P
Sbjct: 313 RSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTD 372
Query: 625 SEIYIHRSGRTARANNEGLTVVLI 648
S+ Y+HR GRTARA G+ + +
Sbjct: 373 SKTYVHRVGRTARAGKSGVAISFV 396
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 36/62 (58%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S+ LILAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 120 SFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPG 179
Query: 1413 AL 1414
L
Sbjct: 180 RL 181
>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
Length = 455
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 240/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETG GKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGPGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEHLIGKK--LPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 427
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 214/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETG GKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGPGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 41.2 bits (95), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPGFPTQDDEVMMLTERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 404 AEAQRFARMELREHGEKKKRSRED 427
>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
Length = 448
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 159/486 (32%), Positives = 245/486 (50%), Gaps = 83/486 (17%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
DT +N V+ W + + + + +K PT+IQ +P L KD++G AET
Sbjct: 10 DTKDN----VEKITWKDLGLVDILCKTCLDLKWKEPTRIQQEAIPLTLQG-KDVIGLAET 64
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF +PIL + LENP
Sbjct: 65 GSGKTAAFALPILQAL---LENP------------------------------------Q 85
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
+ +ALIL PTRELA Q+ G VK +VGGM Q IL K PHI++ATPG
Sbjct: 86 RYFALILTPTRELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILEKKPHIIIATPG 145
Query: 936 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFV 994
RL + ++ F+L +L +LV+DE DR++ E+ IL RV E R+T +
Sbjct: 146 RLVDHLENTKGFNLRQL---KFLVMDEADRILNMDFEVEVDKIL-RVIPRE----RRTLL 197
Query: 995 FSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 1054
FSAT+T KKV K ++R ++++P V+++ K + L
Sbjct: 198 FSATMT----------------KKVQK----LQRA----SLRNPVKVEVSTKYQTVEKLQ 233
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
+ I KD YL + + + G + ++FC + ++ R LL L + +PLH M Q
Sbjct: 234 QYYIFIPVKFKDVYLVHILNELAGNSFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMTQ 293
Query: 1114 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
+R+ L +F+ +N SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA
Sbjct: 294 NKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGR 353
Query: 1174 EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIK 1233
G ++ + ++ LY ++ + K+ LP FP +E + L+++R+ A+ I ++
Sbjct: 354 SGRSITFVTQYDVELYQRIEQLISKQ--LPLFPTEEEEVMLLQERVSEAQRIVKMDM--- 408
Query: 1234 KNRPDN 1239
KN DN
Sbjct: 409 KNMEDN 414
Score = 174 bits (442), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 145/518 (27%), Positives = 220/518 (42%), Gaps = 160/518 (30%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
DT +N V+ W + + + + +K PT+IQ +P L KD++G AET
Sbjct: 10 DTKDN----VEKITWKDLGLVDILCKTCLDLKWKEPTRIQQEAIPLTLQG-KDVIGLAET 64
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF +PIL + LENP
Sbjct: 65 GSGKTAAFALPILQAL---LENP------------------------------------Q 85
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
+ +ALIL PTRELA Q+ G VK +VGGM Q IL K PHI++ATPG
Sbjct: 86 RYFALILTPTRELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILEKKPHIIIATPG 145
Query: 319 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
RL + ++ F+L +L +LV+DE DR++ E+ IL RV PR+
Sbjct: 146 RLVDHLENTKGFNLRQL---KFLVMDEADRILNMDFEVEVDKIL-RVI------PRE--- 192
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
R+T +FSAT+T KKV K +
Sbjct: 193 -----------------------RRTLLFSATMT----------------KKVQK----L 209
Query: 438 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497
+R ++++P V+++ K + L + I KD YL + + + G
Sbjct: 210 QR----ASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAG-------- 257
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
+S++ + C + ++
Sbjct: 258 -----------------------------------NSFMIF------------CGTCNNT 270
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617
R LL L + +PLH M Q +R+ L +F+ +N SIL++TDVA+RGLDIP ++ VI
Sbjct: 271 VRTALLLRNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVI 330
Query: 618 HYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
++ +P S+ YIHR GRTARA G ++ + ++ L
Sbjct: 331 NFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVEL 368
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ G VK +VGGM Q IL K PHI++ATPG
Sbjct: 87 YFALILTPTRELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILEKKPHIIIATPGR 146
Query: 1414 LSLKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENA 1468
L +++LE+ N R +L D MD ++ + +++ R
Sbjct: 147 L----------VDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTL 196
Query: 1469 LMSKALVSKRKELQ 1482
L S + K ++LQ
Sbjct: 197 LFSATMTKKVQKLQ 210
Score = 45.1 bits (105), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ LY ++ + K+ LP FP +E + L+++R+
Sbjct: 340 DYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQ--LPLFPTEEEEVMLLQERV 397
Query: 1299 DLAKSIEYLESKIKKNRPDN 1318
A+ I ++ KN DN
Sbjct: 398 SEAQRIVKMDM---KNMEDN 414
>gi|410079330|ref|XP_003957246.1| hypothetical protein KAFR_0D04630 [Kazachstania africana CBS 2517]
gi|372463831|emb|CCF58111.1| hypothetical protein KAFR_0D04630 [Kazachstania africana CBS 2517]
Length = 487
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 149/470 (31%), Positives = 239/470 (50%), Gaps = 77/470 (16%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
E D N+E + + N+ +I+A ++ PT IQS +P AL KDI+G A
Sbjct: 57 EEDAGNDE----TFESFTELNLVPELIQACKNLNYEKPTPIQSKSIPPALNG-KDIIGLA 111
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
+TGSGKT AF IPIL + + ++L
Sbjct: 112 QTGSGKTAAFAIPILNSLWH-----------------------DQLP------------- 135
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
YA IL+PTRELA Q++ G V+ C+VGGM+ Q R L + PHI++AT
Sbjct: 136 ---YYACILSPTRELAQQIKETFDSLGSLMGVRTVCIVGGMNMMDQARDLMRKPHIIIAT 192
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRL + ++ + L K+ YLV+DE DR+++ P +LDR+ ++ R T+
Sbjct: 193 PGRLMDHLE--NTRGFSLRKLRYLVMDEADRLLDMEFGP----VLDRILKILPTEGRTTY 246
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 1053
+FSAT+T SK K+ + ++ +P ++ K TL
Sbjct: 247 LFSATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTL 282
Query: 1054 TESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
++ ++ K+++L Y + + G+T ++F + ++ +R+ L +L+ + LH +N
Sbjct: 283 VQTLMVVPGGLKNTFLIYLLNEFHGKTFIIFTRTKANAERIAGLANLLEFNATALHGDLN 342
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q QR LD F+ SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA
Sbjct: 343 QNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAG 402
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
G ++ L+ ++ L +++ L KK LP +D+ ++ ++ +D A
Sbjct: 403 RSGKSISLVSQYDLELILRIEEVLGKK--LPKESVDKDIILSLRDSVDKA 450
Score = 183 bits (464), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 143/519 (27%), Positives = 222/519 (42%), Gaps = 157/519 (30%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
E D N+E + + N+ +I+A ++ PT IQS +P AL KDI+G A
Sbjct: 57 EEDAGNDE----TFESFTELNLVPELIQACKNLNYEKPTPIQSKSIPPALNG-KDIIGLA 111
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
+TGSGKT AF IPIL + + ++L
Sbjct: 112 QTGSGKTAAFAIPILNSLWH-----------------------DQLP------------- 135
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
YA IL+PTRELA Q++ G V+ C+VGGM+ Q R L + PHI++AT
Sbjct: 136 ---YYACILSPTRELAQQIKETFDSLGSLMGVRTVCIVGGMNMMDQARDLMRKPHIIIAT 192
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRL + ++ + L K+ YLV+DE DR+++ P
Sbjct: 193 PGRLMDHLE--NTRGFSLRKLRYLVMDEADRLLDMEFGP--------------------- 229
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
+LDR+ ++ R T++FSAT+T SK K+ +
Sbjct: 230 -----------VLDRILKILPTEGRTTYLFSATMT-------------SKIDKLQRA--- 262
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
++ +P ++ K TL ++ ++ K+++L Y + + G+T
Sbjct: 263 --------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFHGKT----- 309
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556
FI+ F + ++
Sbjct: 310 ------------------------------------------FII--------FTRTKAN 319
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616
+R+ L +L+ + LH +NQ QR LD F+ SIL+ATDVAARGLDIP ++ V
Sbjct: 320 AERIAGLANLLEFNATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIV 379
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
I+Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 380 INYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 418
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A IL+PTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 136 YYACILSPTRELAQQIKETFDSLGSLMGVRTVCIVGGMNMMDQARDLMRKPHIIIATPGR 195
Query: 1414 L 1414
L
Sbjct: 196 L 196
>gi|149713746|ref|XP_001501494.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1 [Equus
caballus]
Length = 455
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 240/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K+ R D
Sbjct: 377 RIEHLIGKK--LPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRTRED 427
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 40.0 bits (92), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLTERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K+ R D
Sbjct: 404 TEAQRFARMELREHGEKKKRTRED 427
>gi|340522166|gb|EGR52399.1| predicted protein [Trichoderma reesei QM6a]
Length = 482
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 145/467 (31%), Positives = 235/467 (50%), Gaps = 81/467 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + I +++ A +K PT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 60 FKELGIVDSLCEACESLNYKRPTAIQAKAIPVALQGR-DVIGLAETGSGKTAAFALPILQ 118
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LE P L+ L+LAPTRELA
Sbjct: 119 AL---LEKP------------------------------------QPLFGLVLAPTRELA 139
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ G ++ A +VGG+ Q L K PHI+VATPGRL + H T
Sbjct: 140 AQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVD-----HLEKT 194
Query: 950 E---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
+ L + YLV+DE DR+++ P + IL + + R+T++FSATL+ ++
Sbjct: 195 KGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFI-----PRERRTYLFSATLSSKVE-- 247
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEK 1065
S++R +++ P V ++ K TL + IL H K
Sbjct: 248 ------------------SLQRA----SLRDPVRVSVSSSKYQTVSTLLQHYILVPHKRK 285
Query: 1066 DSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
D+YL Y + + G++++ F ++ +R+ LL L +PLH ++Q RL L++F+
Sbjct: 286 DTYLIYLVNEFAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFK 345
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+ IL+ATDVAARGLDIP ++ V++ +P+ S+ YIHR GRTARA G+ + ++
Sbjct: 346 GGSREILVATDVAARGLDIPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGIAINIVTQY 405
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ +Y ++ +L KK+D +P ++ + + R++ A+ +E K
Sbjct: 406 DVEIYQRIEAALGKKLDA--YPTEKEEVMAFQSRVEEAQREARIEMK 450
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/500 (28%), Positives = 214/500 (42%), Gaps = 161/500 (32%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + I +++ A +K PT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 60 FKELGIVDSLCEACESLNYKRPTAIQAKAIPVALQGR-DVIGLAETGSGKTAAFALPILQ 118
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LE P L+ L+LAPTRELA
Sbjct: 119 AL---LEKP------------------------------------QPLFGLVLAPTRELA 139
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ G ++ A +VGG+ Q L K PHI+VATPGRL + H T
Sbjct: 140 AQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVD-----HLEKT 194
Query: 333 E---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+ L + YLV+DE DR+++ P + IL + PR+
Sbjct: 195 KGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFI-------PRE--------------- 232
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
R+T++FSATL+ ++ S++R +++ P
Sbjct: 233 -----------RRTYLFSATLSSKVE--------------------SLQR----ASLRDP 257
Query: 450 KIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508
V + + K TL + IL H KD+YL Y + + G+++
Sbjct: 258 VRVSVSSSKYQTVSTLLQHYILVPHKRKDTYLIYLVNEFAGKSI---------------- 301
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 568
I T+T+ E+ +R+ LL L
Sbjct: 302 -----IIFTRTVFET----------------------------------QRIAILLRTLG 322
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
+PLH ++Q RL L++F+ + IL+ATDVAARGLDIP ++ V++ +P+ S+ Y
Sbjct: 323 FGAIPLHGQLSQSSRLGALNKFKGGSREILVATDVAARGLDIPAVDVVLNLDLPQDSKTY 382
Query: 629 IHRSGRTARANNEGLTVVLI 648
IHR GRTARA G+ + ++
Sbjct: 383 IHRVGRTARAGKSGIAINIV 402
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
L+LAPTRELA Q+ G ++ A +VGG+ Q L K PHI+VATPG L
Sbjct: 129 GLVLAPTRELAAQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLV 188
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
K L +S++YL + D L DMD + +++ R L
Sbjct: 189 DHLEKTKGFSL-RSLKYL----VMDEADRLL-----DMDFGPSIDKILKFIPRERRTYLF 238
Query: 1471 SKALVSKRKELQ 1482
S L SK + LQ
Sbjct: 239 SATLSSKVESLQ 250
>gi|410963864|ref|XP_003988479.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1 [Felis
catus]
Length = 455
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 149/459 (32%), Positives = 235/459 (51%), Gaps = 76/459 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYVFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++ + + KK LP FP + + ++ +R+ A+ +E
Sbjct: 377 RIEHLIGKK--LPVFPTQDDEVMMLTERVTEAQRFARME 413
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYVFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PH+++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHVIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 514
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 217/420 (51%), Gaps = 72/420 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ E I++A+ GF+ P+KIQS V+P LL D++G AETG+GKTLA+G PI+
Sbjct: 2 DFKELNLNEKILKAIDDMGFEEPSKIQSEVIP-VLLQGSDVIGQAETGTGKTLAYGAPII 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
N+ G E K++ L+L PTREL
Sbjct: 61 ---------------NNIGSNE------------------------GKVFCLVLTPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
AIQV + + GKY+ V++ V GG+ ++Q++ + + I++ TPGR+ + I+ L
Sbjct: 82 AIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIIIGTPGRVLDLIKRDILRL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ + YLV+DE D M++ G ++K I++ T++ RQT +FSAT+ +KN
Sbjct: 142 ND---VKYLVLDEADEMLDMGFIDDIKEIIN-----HTNKERQTMMFSATMPDEIKNL-- 191
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
+KK K D K + + +K T+ K+ E+ +S
Sbjct: 192 -------AKKYMKSDA--------------KFISIVKKTMTVSTVQHFYYEVKNQERFES 230
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P T++FC + V LT+ + + +H M+Q QR+ L +F++ N
Sbjct: 231 LCRILDVEEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGN 290
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
L+ATDVAARG+DI + HVI+Y++P+ E Y+HR GRT RAN G+ L+ S E P
Sbjct: 291 LDFLVATDVAARGIDIENLTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYP 350
Score = 133 bits (334), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 129/238 (54%), Gaps = 49/238 (20%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ E I++A+ GF+ P+KIQS V+P LL D++G AETG+GKTLA+G PI+
Sbjct: 2 DFKELNLNEKILKAIDDMGFEEPSKIQSEVIP-VLLQGSDVIGQAETGTGKTLAYGAPII 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
N+ G E K++ L+L PTREL
Sbjct: 61 ---------------NNIGSNE------------------------GKVFCLVLTPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
AIQV + + GKY+ V++ V GG+ ++Q++ + + I++ TPGR+ + I+ L
Sbjct: 82 AIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIIIGTPGRVLDLIKRDILRL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNI 388
+ + YLV+DE D M++ G ++K I++ T++ RQTM+ S P E+KN+
Sbjct: 142 ND---VKYLVLDEADEMLDMGFIDDIKEIIN-----HTNKERQTMMFSATMPDEIKNL 191
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 70/114 (61%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
++ P T++FC + V LT+ + + +H M+Q QR+ L +F++ N L+A
Sbjct: 237 VEEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLDFLVA 296
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
TDVAARG+DI + HVI+Y++P+ E Y+HR GRT RAN G+ L+ S E P
Sbjct: 297 TDVAARGIDIENLTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYP 350
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG-AL 1414
L+L PTRELAIQV + + GKY+ V++ V GG+ ++Q++ + + I++ TPG L
Sbjct: 72 CLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIIIGTPGRVL 131
Query: 1415 SLKRIDLAK--SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSK 1472
L + D+ + ++YL + D L DM I D + +I R+ + S
Sbjct: 132 DLIKRDILRLNDVKYLVL----DEADEML-----DMGFIDDIKEIINHTNKERQTMMFSA 182
Query: 1473 ALVSKRKELQSLLGKS 1488
+ + K L KS
Sbjct: 183 TMPDEIKNLAKKYMKS 198
>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Oryctolagus cuniculus]
Length = 455
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 234/459 (50%), Gaps = 76/459 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVHCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++ + + KK LP FP + + ++ +R+ A+ +E
Sbjct: 377 RIEHLIGKK--LPVFPTQDDEVMMLTERVAEAQRFARME 413
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 214/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVHCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 507
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 148/455 (32%), Positives = 228/455 (50%), Gaps = 75/455 (16%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
II A + GFK PT+IQ +P A+ R DI+G A+TGSGKT AF IPIL + L++P
Sbjct: 93 IIEACVRMGFKKPTEIQRESIPHAIAGR-DIIGLAQTGSGKTAAFAIPILQQL---LQSP 148
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
L+ALIL+PTRELA Q+
Sbjct: 149 ------------------------------------QPLFALILSPTRELAFQISQQFEA 172
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR-LWEFIQLGHFHLTELYKINYL 957
G VK +VGGM +Q +L + PHI+V TPGR ++ FHL L +L
Sbjct: 173 LGAVIGVKCGVLVGGMDVMQQAMVLARKPHIIVGTPGRVMYHLENTKGFHLKAL---KFL 229
Query: 958 VIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSK 1017
V+DE DR++ E+ IL + + R T++FSAT+T + +K +
Sbjct: 230 VMDEADRLLSMDFEEEINKILKVI-----PKNRNTYLFSATMTSKV----------AKLQ 274
Query: 1018 KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 1077
K S +P K+ + K TL + + KD YL Y + +
Sbjct: 275 KASLVNPI-------------KVQVASTKYSTVDTLVQQYCFIPYQHKDCYLTYILNELS 321
Query: 1078 GRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
G + +VF + ++ RL+ +L L +P++ +M+Q +RL +L++F+ +IL+ATDV
Sbjct: 322 GNSAIVFVATCAASNRLSVMLRNLGLGAIPINGNMDQTKRLASLNKFKSSVKNILVATDV 381
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
AARGLDIP + V++Y +P S+ Y+HR GRTARA G + L+ ++ +Y ++ +L
Sbjct: 382 AARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQYDVEVYQRIEFAL 441
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
KK L +FP + S + + + ++ A + LE K
Sbjct: 442 SKK--LEEFPSESSSVLVFLEAVNEAARLASLEVK 474
Score = 155 bits (392), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 138/489 (28%), Positives = 196/489 (40%), Gaps = 157/489 (32%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
II A + GFK PT+IQ +P A+ R DI+G A+TGSGKT AF IPIL + L++P
Sbjct: 93 IIEACVRMGFKKPTEIQRESIPHAIAGR-DIIGLAQTGSGKTAAFAIPILQQL---LQSP 148
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
L+ALIL+PTRELA Q+
Sbjct: 149 ------------------------------------QPLFALILSPTRELAFQISQQFEA 172
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR-LWEFIQLGHFHLTELYKINYL 340
G VK +VGGM +Q +L + PHI+V TPGR ++ FHL L +L
Sbjct: 173 LGAVIGVKCGVLVGGMDVMQQAMVLARKPHIIVGTPGRVMYHLENTKGFHLKAL---KFL 229
Query: 341 VIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQP 400
V+DE DR++ E+ IL + P+
Sbjct: 230 VMDEADRLLSMDFEEEINKILKVI-------PKN-------------------------- 256
Query: 401 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460
R T++FSAT+T + +K +K S +P K+ + K
Sbjct: 257 RNTYLFSATMTSKV----------AKLQKASLVNPI-------------KVQVASTKYST 293
Query: 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTL 520
TL + + KD YL Y + + G + I T
Sbjct: 294 VDTLVQQYCFIPYQHKDCYLTYILNELSGNS---------------------AIVFVATC 332
Query: 521 TESKILCKHDEKDSYLYYFILQHPGRTLVFCNS-ISSVKRLTQLLTMLKCSPLPLHASMN 579
S L +L++ G + N + KRL AS+N
Sbjct: 333 AASNRLS-----------VMLRNLGLGAIPINGNMDQTKRL---------------ASLN 366
Query: 580 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 639
+ F+ +IL+ATDVAARGLDIP + V++Y +P S+ Y+HR GRTARA
Sbjct: 367 K---------FKSSVKNILVATDVAARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAG 417
Query: 640 NEGLTVVLI 648
G + L+
Sbjct: 418 QSGRAITLV 426
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+ G VK +VGGM +Q +L + PHI+V TPG
Sbjct: 153 ALILSPTRELAFQISQQFEALGAVIGVKCGVLVGGMDVMQQAMVLARKPHIIVGTPG 209
>gi|351711397|gb|EHB14316.1| Putative ATP-dependent RNA helicase DDX47 [Heterocephalus glaber]
Length = 454
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 151/473 (31%), Positives = 241/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 28 LGVTDVLCEACDQLGWTKPTKIQIEAIPMALQGR-DIIGLAETGSGKTGAFALPILNALL 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ T +L+AL+L PTRELA Q+
Sbjct: 87 D---------------------------------------TPQRLFALVLTPTRELAFQI 107
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 108 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLENTKGFNLRAL 167
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 168 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 208
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 209 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 255
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 256 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 315
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 316 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 375
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 376 RIEHLIGKK--LPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRSRED 426
Score = 178 bits (451), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 140/501 (27%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 28 LGVTDVLCEACDQLGWTKPTKIQIEAIPMALQGR-DIIGLAETGSGKTGAFALPILNALL 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ T +L+AL+L PTRELA Q+
Sbjct: 87 D---------------------------------------TPQRLFALVLTPTRELAFQI 107
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 108 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLENTKGFNLRAL 167
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 168 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 197
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 198 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 227
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 228 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 262
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 263 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 292
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 293 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 352
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 353 TARAGRSGKAITFVTQYDVEL 373
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PH+++ATPG L
Sbjct: 94 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHVVIATPGRL- 152
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 153 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 203
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 204 SATMTKKVQKLQ 215
Score = 40.4 bits (93), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 345 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLTERV 402
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 403 TEAQRFARMELREHGEKKKRSRED 426
>gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia]
Length = 451
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 148/477 (31%), Positives = 245/477 (51%), Gaps = 82/477 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + E + A + G+K PT IQ +P L +KDI+G AETGSGKTLAFG+PIL
Sbjct: 14 FKELGVCEELSSACEKLGYKIPTPIQQQSLPYTL-QKKDIIGLAETGSGKTLAFGLPILQ 72
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ L NP YALIL+PTREL
Sbjct: 73 HL---LANP------------------------------------QPYYALILSPTRELC 93
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR-LWEFIQLGHFHL 948
+Q+Q H G +K ++GGM Q + L + PHI++ TPG+ L+ F+L
Sbjct: 94 VQIQEHFQAIGASIALKSVVILGGMDPLAQAKALAQKPHIIIGTPGKILYHLENTKGFNL 153
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+L +LV+DE D+++ E+ ILD + + R T++FSAT+T+
Sbjct: 154 KQL---KFLVLDEADKLLNMDFEREINAILDII-----PKERNTYLFSATMTN------- 198
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KVSK ++R ++K P ++++ K TL ++ + K++Y
Sbjct: 199 ---------KVSK----LQRA----SLKDPVKIEVSSKYQTVSTLQQNYLFVPDKYKETY 241
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + + G T +VF + ++T LL L + +H M+Q +RL + ++F+ +
Sbjct: 242 LVYLLNELAGLTSIVFVATCQMAIKITLLLRNLGFQAIAIHGQMSQAKRLSSFNKFKSKE 301
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
+++L+ATDVA+RGLDIP ++ V+++ +P+ ++ Y+HR GRTARA G + L+ ++
Sbjct: 302 SNLLIATDVASRGLDIPFVDLVLNFDIPQNAKEYVHRVGRTARAGKSGKAISLVTQYDVE 361
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI------EYLESKIKKNRPD 1238
+Y K+ +EK +L +P++ES + + +R+ A I + LE K+KK D
Sbjct: 362 MYQKIEQLIEK--ELSQYPLEESDVMVFYERVQEANRIATQELKDLLEKKVKKTAVD 416
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 155/585 (26%), Positives = 256/585 (43%), Gaps = 172/585 (29%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + E + A + G+K PT IQ +P L +KDI+G AETGSGKTLAFG+PIL
Sbjct: 14 FKELGVCEELSSACEKLGYKIPTPIQQQSLPYTL-QKKDIIGLAETGSGKTLAFGLPILQ 72
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ L NP YALIL+PTREL
Sbjct: 73 HL---LANP------------------------------------QPYYALILSPTRELC 93
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR-LWEFIQLGHFHL 331
+Q+Q H G +K ++GGM Q + L + PHI++ TPG+ L+ F+L
Sbjct: 94 VQIQEHFQAIGASIALKSVVILGGMDPLAQAKALAQKPHIIIGTPGKILYHLENTKGFNL 153
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+L +LV+DE D+++ E+ ILD + P++
Sbjct: 154 KQL---KFLVLDEADKLLNMDFEREINAILDII-------PKE----------------- 186
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R T++FSAT+T+ KVSK ++R ++K P
Sbjct: 187 ---------RNTYLFSATMTN----------------KVSK----LQR----ASLKDPVK 213
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
++++ K TL ++ + K++YL Y L
Sbjct: 214 IEVSSKYQTVSTLQQNYLFVPDKYKETYLVYL--------------------------LN 247
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
E G+T ++VF + ++T LL L
Sbjct: 248 ELAGLT-----------------------------SIVFVATCQMAIKITLLLRNLGFQA 278
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+ +H M+Q +RL + ++F+ + +++L+ATDVA+RGLDIP ++ V+++ +P+ ++ Y+HR
Sbjct: 279 IAIHGQMSQAKRLSSFNKFKSKESNLLIATDVASRGLDIPFVDLVLNFDIPQNAKEYVHR 338
Query: 632 SGRTARANNEGLTVVLIESDEIPLKTKF-NLQEEENNE---EEERAEADKEKTEDINVTV 687
GRTARA G + L+ ++ + K L E+E ++ EE E+ ++ N
Sbjct: 339 VGRTARAGKSGKAISLVTQYDVEMYQKIEQLIEKELSQYPLEESDVMVFYERVQEANRIA 398
Query: 688 SSKKKKLKRKQNPSQVEVSELSANTNDPDD----QVNKTEEIQSD 728
+ + K L K+ V + + + +D DD Q+NK +IQ D
Sbjct: 399 TQELKDLLEKK------VKKTAVDEDDLDDRKIKQINK--KIQKD 435
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+ ALIL+PTREL +Q+Q H G +K ++GGM Q + L + PHI++ TPG
Sbjct: 81 YYALILSPTRELCVQIQEHFQAIGASIALKSVVILGGMDPLAQAKALAQKPHIIIGTPG 139
Score = 45.1 bits (105), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA G + L+ ++ +Y K+ +EK +L +P++ES + + +R+
Sbjct: 335 YVHRVGRTARAGKSGKAISLVTQYDVEMYQKIEQLIEK--ELSQYPLEESDVMVFYERVQ 392
Query: 1300 LAKSI------EYLESKIKKNRPD 1317
A I + LE K+KK D
Sbjct: 393 EANRIATQELKDLLEKKVKKTAVD 416
>gi|310801624|gb|EFQ36517.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 480
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 232/464 (50%), Gaps = 81/464 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ +++ A G+ PT IQ+ +P AL A +DI+G AETGSGKT AF +P++ +
Sbjct: 57 LGVADSLCDACANLGYTKPTPIQAQSIPHAL-ANRDIIGLAETGSGKTAAFALPVIQAL- 114
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P + L+LAPTRELA Q+
Sbjct: 115 --LEKP------------------------------------QAFFGLVLAPTRELAAQI 136
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A +VGG+ Q L K PH++VATPGRL + H T+
Sbjct: 137 GQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKPHVIVATPGRLVD-----HLEKTKGF 191
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + YLV+DE DR+++ P + IL + + R+TF+FSAT++ ++
Sbjct: 192 SLRSLKYLVMDEADRLLDMDFGPSIDKILKFI-----PRERRTFLFSATMSSKIE----- 241
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSY 1068
S++R +++ P V ++ K TL + + H KD+Y
Sbjct: 242 ---------------SLQRA----SLRDPVRVSISSNKYQTVSTLLQYYLFIPHQLKDTY 282
Query: 1069 LYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + G+ LV F ++S +RL LL L +PLH +NQ RL L++FR
Sbjct: 283 LVYLANEFAGKKLVVFTRTVSETQRLAILLRTLGFGAIPLHGQLNQTARLGALNKFRAGE 342
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL+ATDVAARGLDIP ++ VI++ + + S+ ++HR GRTARA G+ L L+ ++
Sbjct: 343 RSILVATDVAARGLDIPLVDVVINHDLAQDSKTHVHRIGRTARAGKSGIALSLVTQYDLE 402
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+++++ +L KK D ++P + + + + R++ A+ +E K
Sbjct: 403 IWLRIEAALGKKQD--EYPTQKEEVMVFQSRVEEAQRHARMEMK 444
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 146/525 (27%), Positives = 225/525 (42%), Gaps = 166/525 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ +++ A G+ PT IQ+ +P AL A +DI+G AETGSGKT AF +P++ +
Sbjct: 57 LGVADSLCDACANLGYTKPTPIQAQSIPHAL-ANRDIIGLAETGSGKTAAFALPVIQAL- 114
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P + L+LAPTRELA Q+
Sbjct: 115 --LEKP------------------------------------QAFFGLVLAPTRELAAQI 136
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A +VGG+ Q L K PH++VATPGRL + H T+
Sbjct: 137 GQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKPHVIVATPGRLVD-----HLEKTKGF 191
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YLV+DE DR+++ P + IL + PR+
Sbjct: 192 SLRSLKYLVMDEADRLLDMDFGPSIDKILKFI-------PRE------------------ 226
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+TF+FSAT++ ++ S++R +++ P V
Sbjct: 227 --------RRTFLFSATMSSKIE--------------------SLQR----ASLRDPVRV 254
Query: 453 DLTE-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
++ K TL + + H KD+YL Y + G+ L
Sbjct: 255 SISSNKYQTVSTLLQYYLFIPHQLKDTYLVYLANEFAGKKL------------------- 295
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+ T+T++E+ +RL LL L
Sbjct: 296 --VVFTRTVSET----------------------------------QRLAILLRTLGFGA 319
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH +NQ RL L++FR SIL+ATDVAARGLDIP ++ VI++ + + S+ ++HR
Sbjct: 320 IPLHGQLNQTARLGALNKFRAGERSILVATDVAARGLDIPLVDVVINHDLAQDSKTHVHR 379
Query: 632 SGRTARANNEGLTVVLI-ESD-EIPLKTKFNL---QEEENNEEEE 671
GRTARA G+ + L+ + D EI L+ + L Q+E ++EE
Sbjct: 380 IGRTARAGKSGIALSLVTQYDLEIWLRIEAALGKKQDEYPTQKEE 424
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ L+LAPTRELA Q+ G ++ A +VGG+ Q L K PH++VATPG
Sbjct: 120 AFFGLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKPHVIVATPG 179
Query: 1413 AL-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSREN 1467
L K L +S++YL + D L DMD + +++ R
Sbjct: 180 RLVDHLEKTKGFSL-RSLKYL----VMDEADRLL-----DMDFGPSIDKILKFIPRERRT 229
Query: 1468 ALMSKALVSKRKELQ 1482
L S + SK + LQ
Sbjct: 230 FLFSATMSSKIESLQ 244
>gi|431908355|gb|ELK11952.1| Putative ATP-dependent RNA helicase DDX47 [Pteropus alecto]
Length = 472
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 160/500 (32%), Positives = 252/500 (50%), Gaps = 85/500 (17%)
Query: 746 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
T K+L+ VD + D F+ + + + + A Q G+ PTKIQ +P AL
Sbjct: 23 TKTFKDLVSVD---DADSFLSCWRQAQ-GVTDVLCEACDQLGWTKPTKIQIEAIPLALQG 78
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
R DI+G AETGSGKT AF +PIL + LE P
Sbjct: 79 R-DIIGLAETGSGKTGAFALPILNAL---LETP--------------------------- 107
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
+L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K
Sbjct: 108 ---------QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 158
Query: 926 CPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 984
PHI++ATPGRL + ++ F+L L YLV+DE DR++ E+ IL +
Sbjct: 159 KPHIVIATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKILKVI--- 212
Query: 985 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 1044
+ R+T +FSAT+T KKV K ++R +K+P ++
Sbjct: 213 --PRDRKTLLFSATMT----------------KKVQK----LQRAA----LKNPVKCAVS 246
Query: 1045 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCS 1103
K + L + + KD+YL Y + + G + ++FC++ ++ +R LL L +
Sbjct: 247 SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT 306
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
+PLH M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIH
Sbjct: 307 AIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 366
Query: 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
R GRTARA G + + ++ L+ ++ + + KK LP FP ++ + ++ +R+ A+
Sbjct: 367 RVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTEDDEVMMLTERVTEAQ 424
Query: 1224 SIEYLE-----SKIKKNRPD 1238
+E K K+ R D
Sbjct: 425 RFARMELREHGEKKKRTRED 444
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 149/528 (28%), Positives = 226/528 (42%), Gaps = 160/528 (30%)
Query: 129 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
T K+L+ VD + D F+ + + + + A Q G+ PTKIQ +P AL
Sbjct: 23 TKTFKDLVSVD---DADSFLSCWRQAQ-GVTDVLCEACDQLGWTKPTKIQIEAIPLALQG 78
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
R DI+G AETGSGKT AF +PIL + LE P
Sbjct: 79 R-DIIGLAETGSGKTGAFALPILNAL---LETP--------------------------- 107
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
+L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K
Sbjct: 108 ---------QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 158
Query: 309 CPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 367
PHI++ATPGRL + ++ F+L L YLV+DE DR++ E+ IL +
Sbjct: 159 KPHIVIATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKILKVI--- 212
Query: 368 ETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 427
PR R+T +FSAT+T
Sbjct: 213 ----PRD--------------------------RKTLLFSATMT---------------- 226
Query: 428 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 487
KKV K ++R +K+P ++ K + L + + KD+YL Y + +
Sbjct: 227 KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 278
Query: 488 PGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547
G +S++ +
Sbjct: 279 AG-------------------------------------------NSFMIF--------- 286
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
C++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RG
Sbjct: 287 ---CSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 343
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L
Sbjct: 344 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 391
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 112 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 170
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 171 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTLLF 221
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 222 SATMTKKVQKLQ 233
Score = 40.8 bits (94), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP ++ + ++ +R+
Sbjct: 363 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTEDDEVMMLTERV 420
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K+ R D
Sbjct: 421 TEAQRFARMELREHGEKKKRTRED 444
>gi|73997167|ref|XP_534885.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1 [Canis
lupus familiaris]
Length = 456
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 240/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K+ R D
Sbjct: 377 RIEHLIGKK--LPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRTRED 427
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 40.0 bits (92), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLTERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K+ R D
Sbjct: 404 TEAQRFARMELREHGEKKKRTRED 427
>gi|296425145|ref|XP_002842103.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638362|emb|CAZ86294.1| unnamed protein product [Tuber melanosporum]
Length = 513
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 230/458 (50%), Gaps = 79/458 (17%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ + +++ A G+K PT IQ +P AL KD++G AETGSGKT AF IPIL +
Sbjct: 86 ELGVMDSLCEACENLGYKNPTSIQVESIPVALEG-KDLIGLAETGSGKTAAFAIPILQAL 144
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+NPT L+A ILAPTRELA Q
Sbjct: 145 ---WDNPT------------------------------------GLFACILAPTRELAFQ 165
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
+ G V+ A +VGGM Q L K PHILVATPGRL + ++ + L
Sbjct: 166 ISEQFEALGGGIGVRSAVIVGGMDMMTQSVALGKKPHILVATPGRLLDHLE--NTKGFSL 223
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+ YLV+DE DR+++ P L IL + Q R+T++FSAT+T
Sbjct: 224 RNLKYLVMDEADRLLDMDFGPILDKILKVI-----PQTRRTYLFSATMT----------- 267
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
SK +K+ + ++ SP + + K TL + + KD+YL Y
Sbjct: 268 --SKVEKLQRA-----------SLSSPVRISVGSKYSTVSTLIQKFLFIPFKHKDTYLVY 314
Query: 1072 FILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G+ T++FC ++ RL LL L + +PL+ M+Q RL L++F+ + +I
Sbjct: 315 LMNEFAGQTTIIFCRTVQETSRLAILLRHLGFNAVPLNGQMSQSARLGALNKFKSGSRNI 374
Query: 1131 LLATDVAARGLDI-----PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
L+ATDVAARGLD+ + V+++ + + S+ YIHR GRTARA G ++ L+ E
Sbjct: 375 LVATDVAARGLDMHVSPDALLYCVLNHDLAQDSKTYIHRVGRTARAGRSGRSISLVTQYE 434
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
+ L++++ +L KK+ P+F + E + + +R+ A+
Sbjct: 435 VELFLRIEAALGKKI--PEFDVQEEDVLIFSERVGEAQ 470
Score = 171 bits (432), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 154/546 (28%), Positives = 230/546 (42%), Gaps = 171/546 (31%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ + +++ A G+K PT IQ +P AL KD++G AETGSGKT AF IPIL +
Sbjct: 86 ELGVMDSLCEACENLGYKNPTSIQVESIPVALEG-KDLIGLAETGSGKTAAFAIPILQAL 144
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+NPT L+A ILAPTRELA Q
Sbjct: 145 ---WDNPT------------------------------------GLFACILAPTRELAFQ 165
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
+ G V+ A +VGGM Q L K PHILVATPGRL + ++ + L
Sbjct: 166 ISEQFEALGGGIGVRSAVIVGGMDMMTQSVALGKKPHILVATPGRLLDHLE--NTKGFSL 223
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+ YLV+DE DR+++ P ILD++ LK I
Sbjct: 224 RNLKYLVMDEADRLLDMDFGP----ILDKI--------------------LKVI------ 253
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
Q R+T++FSAT+T SK +K+ + ++ SP + +
Sbjct: 254 ---PQTRRTYLFSATMT-------------SKVEKLQRA-----------SLSSPVRISV 286
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
K TL + + KD+YL Y + + G+T
Sbjct: 287 GSKYSTVSTLIQKFLFIPFKHKDTYLVYLMNEFAGQT----------------------- 323
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+ I C+ ++ S L +L+H G V PL
Sbjct: 324 --------TIIFCRTVQETSRL-AILLRHLGFNAV-----------------------PL 351
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI-----PGIEHVIHYHVPRTSEIYI 629
+ M+Q RL L++F+ + +IL+ATDVAARGLD+ + V+++ + + S+ YI
Sbjct: 352 NGQMSQSARLGALNKFKSGSRNILVATDVAARGLDMHVSPDALLYCVLNHDLAQDSKTYI 411
Query: 630 HRSGRTARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEADK 677
HR GRTARA G ++ L+ E+ L + F++QEE+ ER EA +
Sbjct: 412 HRVGRTARAGRSGRSISLVTQYEVELFLRIEAALGKKIPEFDVQEEDVLIFSERVGEAQR 471
Query: 678 EKTEDI 683
E + +
Sbjct: 472 EAAKQL 477
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 1350 LRYSWD------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
L+ WD A ILAPTRELA Q+ G V+ A +VGGM Q L K
Sbjct: 141 LQALWDNPTGLFACILAPTRELAFQISEQFEALGGGIGVRSAVIVGGMDMMTQSVALGKK 200
Query: 1404 PHILVATPGALSLKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQPKA 1462
PHILVATPG L L ++ K K + + D L DMD + +++
Sbjct: 201 PHILVATPGRL-LDHLENTKGFSLRNLKYLVMDEADRLL-----DMDFGPILDKILKVIP 254
Query: 1463 NSRENALMSKALVSKRKELQ 1482
+R L S + SK ++LQ
Sbjct: 255 QTRRTYLFSATMTSKVEKLQ 274
Score = 43.9 bits (102), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
++HR GRTARA G ++ L+ E+ L++++ +L KK+ P+F + E + + +R+
Sbjct: 409 TYIHRVGRTARAGRSGRSISLVTQYEVELFLRIEAALGKKI--PEFDVQEEDVLIFSERV 466
Query: 1299 DLAK 1302
A+
Sbjct: 467 GEAQ 470
>gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
Length = 474
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 150/468 (32%), Positives = 229/468 (48%), Gaps = 89/468 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I +++ A G+K PT IQ+ +P AL R D+VG AETGSGKT AF +PIL +
Sbjct: 54 LGIIDSLCDACTSLGYKAPTPIQAESIPLALQGR-DLVGLAETGSGKTAAFALPILQAL- 111
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+E P + L+LAPTRELA+Q+
Sbjct: 112 --MEKP------------------------------------QPYFGLVLAPTRELAVQI 133
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 134 SESFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE--NTKGFSLR 191
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLK 1004
+ YLV+DE DR+++ P L IL + + R+T++FSATL+ SL
Sbjct: 192 NLKYLVMDEADRLLDLDFGPVLDKILKVL-----PRERRTYLFSATLSSKVESLQRASLS 246
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
N L + +K + VS TL +S I H
Sbjct: 247 NPLRVSISSNKYQTVS-------------------------------TLLQSYIFIPHKY 275
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD YL + + + PG+T ++F +++ +RL+ LL L +PLH ++Q RL L +F
Sbjct: 276 KDIYLVHILNEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKF 335
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
R + IL+ATDVAARGLDIP ++ V+++ +P S+ YIHR GRTARA G + ++
Sbjct: 336 RSGSRDILVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
E+ ++ ++ +L K+ LP+ ++ + ++ R+ A+ + E K
Sbjct: 396 YEVEIWQRIEAALGKQ--LPEHKTEKEEVMVLSDRVGDAQRLAVTEMK 441
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 155/556 (27%), Positives = 226/556 (40%), Gaps = 173/556 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I +++ A G+K PT IQ+ +P AL R D+VG AETGSGKT AF +PIL +
Sbjct: 54 LGIIDSLCDACTSLGYKAPTPIQAESIPLALQGR-DLVGLAETGSGKTAAFALPILQAL- 111
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+E P + L+LAPTRELA+Q+
Sbjct: 112 --MEKP------------------------------------QPYFGLVLAPTRELAVQI 133
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 134 SESFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE--NTKGFSLR 191
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ P L IL + PR+
Sbjct: 192 NLKYLVMDEADRLLDLDFGPVLDKILKVL-------PRE--------------------- 223
Query: 396 ETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+T++FSATL+ SL N L + +K + VS
Sbjct: 224 -----RRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVS---------------- 262
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
TL +S I H KD YL + + + PG+T
Sbjct: 263 ---------------TLLQSYIFIPHKYKDIYLVHILNEFPGQT---------------- 291
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
I T+T+ E+ +RL+ LL L
Sbjct: 292 -----TIIFTRTVNET----------------------------------QRLSILLRAL 312
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+PLH ++Q RL L +FR + IL+ATDVAARGLDIP ++ V+++ +P S+
Sbjct: 313 GFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDIPAVDLVLNFDLPSDSKT 372
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIP----LKTKFNLQEEENNEEEERAEADKEKTEDI 683
YIHR GRTARA G + ++ E+ ++ Q E+ E+E ++ D
Sbjct: 373 YIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALGKQLPEHKTEKEEVMVLSDRVGDA 432
Query: 684 NVTVSSKKKKLKRKQN 699
++ K L K+
Sbjct: 433 QRLAVTEMKDLHEKRG 448
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ L+LAPTRELA+Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 118 YFGLVLAPTRELAVQISESFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGR 177
Query: 1414 L 1414
L
Sbjct: 178 L 178
>gi|344303537|gb|EGW33786.1| ATP-dependent rRNA helicase RRP3 [Spathaspora passalidarum NRRL
Y-27907]
Length = 475
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 147/454 (32%), Positives = 236/454 (51%), Gaps = 80/454 (17%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+PE ++ ++ F PT IQS +P AL DI+G A+TGSGKT AF IPIL +
Sbjct: 71 VPE-LLESIQSMKFTKPTPIQSEAIPHALEGH-DIIGLAQTGSGKTAAFAIPILQALW-- 126
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+ ++ +AL+LAPTRELA Q++
Sbjct: 127 -------------------------------------EAQSPYFALVLAPTRELAFQIKE 149
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
G ++ C+VGGM Q R L + PH++VATPGR+ + H T+ +K+
Sbjct: 150 TFDALGSTMGLRSVCIVGGMDMMDQARDLMRKPHVIVATPGRIMD-----HLETTKGFKL 204
Query: 955 N---YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR+++ P L IL +V T+ R T++FSAT+T+
Sbjct: 205 KDLKYLVMDEADRLLDMDFGPALDRIL-KVIPTK----RTTYLFSATMTNK--------- 250
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
I++LQ ++ +P V ++ K L +S +L K++ L +
Sbjct: 251 --------------IEKLQRA-SLHNPVRVAVSSKYQTADNLVQSMMLVHDGYKNTILIH 295
Query: 1072 FILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ ++ G+ +VF +++ +R L +L + +PLH ++Q QRL +L++F+ ++ +I
Sbjct: 296 LLSEYEGKLIIVFTRTVAHAQRTALLCRILGFNAVPLHGQLSQAQRLGSLNKFKSRSANI 355
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ LI ++ +Y+
Sbjct: 356 LIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYL 415
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
++ + L KK+ D P E VL + +D A +
Sbjct: 416 RIESVLGKKLPKEDMPPKE-VLDALHPNVDRATA 448
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 139/494 (28%), Positives = 216/494 (43%), Gaps = 161/494 (32%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+PE ++ ++ F PT IQS +P AL DI+G A+TGSGKT AF IPIL +
Sbjct: 71 VPE-LLESIQSMKFTKPTPIQSEAIPHALEGH-DIIGLAQTGSGKTAAFAIPILQALW-- 126
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+ ++ +AL+LAPTRELA Q++
Sbjct: 127 -------------------------------------EAQSPYFALVLAPTRELAFQIKE 149
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK- 336
G ++ C+VGGM Q R L + PH++VATPGR+ + H T+ +K
Sbjct: 150 TFDALGSTMGLRSVCIVGGMDMMDQARDLMRKPHVIVATPGRIMD-----HLETTKGFKL 204
Query: 337 --INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+ YLV+DE DR+++ P L IL +V T+
Sbjct: 205 KDLKYLVMDEADRLLDMDFGPALDRIL-KVIPTK-------------------------- 237
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R T++FSAT+T+ I++LQ ++ +P V +
Sbjct: 238 ------RTTYLFSATMTN-----------------------KIEKLQR-ASLHNPVRVAV 267
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K L +S +L K++ L + + ++ G+ + I
Sbjct: 268 SSKYQTADNLVQSMMLVHDGYKNTILIHLLSEYEGKLI---------------------I 306
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
T+T+ H RT + C +L + +PL
Sbjct: 307 VFTRTVA---------------------HAQRTALLCR-------------ILGFNAVPL 332
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H ++Q QRL +L++F+ ++ +IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GR
Sbjct: 333 HGQLSQAQRLGSLNKFKSRSANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGR 392
Query: 635 TARANNEGLTVVLI 648
TARA G ++ LI
Sbjct: 393 TARAGRSGKSISLI 406
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+ AL+LAPTRELA Q++ G ++ C+VGGM Q R L + PH++VATPG
Sbjct: 132 YFALVLAPTRELAFQIKETFDALGSTMGLRSVCIVGGMDMMDQARDLMRKPHVIVATPG 190
Score = 40.0 bits (92), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA G ++ LI ++ +Y+++ + L KK+ D P E VL + +D
Sbjct: 386 YIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLGKKLPKEDMPPKE-VLDALHPNVD 444
Query: 1300 LAKS 1303
A +
Sbjct: 445 RATA 448
>gi|397644308|gb|EJK76339.1| hypothetical protein THAOC_01902 [Thalassiosira oceanica]
Length = 476
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 162/520 (31%), Positives = 261/520 (50%), Gaps = 80/520 (15%)
Query: 742 KQTYTSANKELLEVDTSN---NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMV 798
++ ++ E E D S+ +ED + + F + ET++ ++ ++ TKIQ+
Sbjct: 25 RKVVSAVGAEQQEDDGSSSEQDEDGIITSKPFASFGLHETLLSSIASLKWENATKIQASS 84
Query: 799 MPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 858
+P AL R D++G AETGSGKT AF IP+L + LE P
Sbjct: 85 IPPALEGR-DVIGLAETGSGKTGAFSIPVLNYL---LEKP-------------------- 120
Query: 859 LEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK 918
+ ++A+ILAPTRELA Q+ + G CVVGG+
Sbjct: 121 ---------------QRSVFAVILAPTRELAFQIHEVVAALGSGMGASSVCVVGGVDMAS 165
Query: 919 QLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 977
Q L + PH++VATPGRL + +Q FHL + I YLV+DE DRM+ E+ I
Sbjct: 166 QAIALARNPHVVVATPGRLLDHLQNTKGFHLRQ---IKYLVLDEADRMLSMDFEREINEI 222
Query: 978 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037
L+ + E R+T +FSAT+T SK +K+ + ++
Sbjct: 223 LEVIPDHEGG--RRTMLFSATMT-------------SKVEKLQRA-----------SLVD 256
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQL 1096
P V+++ K K L +S + KD YL Y I +H G++ LVF + ++V+RL +
Sbjct: 257 PVRVEVSTKFQTPKKLLQSYLFIPAKYKDCYLTYLINEHAGQSILVFGATCNNVQRLALM 316
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L L + LH M+Q +RL L +F+ I++ TDVA+RGLDIP ++ VI++ +P
Sbjct: 317 LRNLGFPAICLHGQMSQPKRLGALTKFKAGGRDIMICTDVASRGLDIPSVDVVINFDLPG 376
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1216
+ YIHR GRTARA G + ++ ++ +Y ++ + L ++ LP++ + E + L+
Sbjct: 377 HGKDYIHRVGRTARAGRSGKAIAMVTQYDVEVYQRLEHLLGQR--LPEYKLAEEEVLLLL 434
Query: 1217 KRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLT 1256
+R++ A+ + E K + + D +R GR R EG+
Sbjct: 435 ERVNDAQRLATRELKEQISTRDG--NRKGRKTR---EGMA 469
Score = 163 bits (413), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 143/538 (26%), Positives = 217/538 (40%), Gaps = 175/538 (32%)
Query: 125 KQTYTSANKELLEVDTSN---NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMV 181
++ ++ E E D S+ +ED + + F + ET++ ++ ++ TKIQ+
Sbjct: 25 RKVVSAVGAEQQEDDGSSSEQDEDGIITSKPFASFGLHETLLSSIASLKWENATKIQASS 84
Query: 182 MPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 241
+P AL R D++G AETGSGKT AF IP+L + LE P
Sbjct: 85 IPPALEGR-DVIGLAETGSGKTGAFSIPVLNYL---LEKP-------------------- 120
Query: 242 LEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK 301
+ ++A+ILAPTRELA Q+ + G CVVGG+
Sbjct: 121 ---------------QRSVFAVILAPTRELAFQIHEVVAALGSGMGASSVCVVGGVDMAS 165
Query: 302 QLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 360
Q L + PH++VATPGRL + +Q FHL + I YLV+DE DRM+ E+ I
Sbjct: 166 QAIALARNPHVVVATPGRLLDHLQNTKGFHLRQ---IKYLVLDEADRMLSMDFEREINEI 222
Query: 361 LDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420
L+ + E R+T +FSAT+T
Sbjct: 223 LEVIPDHEGG------------------------------RRTMLFSATMT--------- 243
Query: 421 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480
SK +K+ + ++ P V+++ K K L +S + KD YL
Sbjct: 244 ----SKVEKLQRA-----------SLVDPVRVEVSTKFQTPKKLLQSYLFIPAKYKDCYL 288
Query: 481 YYFILQHPGRTL------CEEIQDLL----NIKSPKIVDLTEKIGITKTLTESKILCKHD 530
Y I +H G+++ C +Q L N+ P I C H
Sbjct: 289 TYLINEHAGQSILVFGATCNNVQRLALMLRNLGFPAI-------------------CLHG 329
Query: 531 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 590
+ +S KRL L +F
Sbjct: 330 Q----------------------MSQPKRLGAL------------------------TKF 343
Query: 591 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+ I++ TDVA+RGLDIP ++ VI++ +P + YIHR GRTARA G + ++
Sbjct: 344 KAGGRDIMICTDVASRGLDIPSVDVVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMV 401
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A+ILAPTRELA Q+ + G CVVGG+ Q L + PH++VATPG L
Sbjct: 126 AVILAPTRELAFQIHEVVAALGSGMGASSVCVVGGVDMASQAIALARNPHVVVATPGRL 184
>gi|219123243|ref|XP_002181938.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406539|gb|EEC46478.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 433
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 157/459 (34%), Positives = 232/459 (50%), Gaps = 79/459 (17%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
ET+ A + +KT T+IQ+ V+P A R DI+G AETGSGKT AF +PIL G++ K
Sbjct: 48 ETLQEACDRLEWKTATRIQASVLPEAFEGR-DIIGLAETGSGKTGAFCLPILQGLLRK-- 104
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
P VK T ALIL PTRELA Q+ +
Sbjct: 105 -P-------------------------------VKGT----AALILTPTRELAFQILQVV 128
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYK 953
G+ CVVGG+ Q L + PH+++ATPGRL L H T+ L K
Sbjct: 129 QGLGQAMGATAVCVVGGVDRTSQAIALGRNPHVVIATPGRL-----LDHLKDTKGFNLNK 183
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 1013
+ YLV+DE DRM+ EL ILD + + RQT +FSAT+T +
Sbjct: 184 VRYLVLDEADRMLSMDFEEELHQILDNM-----PEQRQTLLFSATMTTQV---------- 228
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073
+K ++ S +K P V ++ K K L +S + KD YL Y I
Sbjct: 229 AKLERAS--------------LKDPVKVQVSTKFQTPKQLLQSYLFIPAKYKDCYLTYLI 274
Query: 1074 LQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
+H G++ LVF + ++V+RL +L L + LH M+Q +RL L +F + +ILL
Sbjct: 275 NEHAGQSILVFGATCNNVQRLALMLRNLGFPAVCLHGQMDQSKRLGALQKFSSGDRTILL 334
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
TDVA+RGLD+P ++ VI++ +P + YIHR GRTARA G + ++ ++ +Y ++
Sbjct: 335 CTDVASRGLDLPQVDLVINFDLPGHGKEYIHRVGRTARAGKSGRAIAMVTQYDVEVYQRL 394
Query: 1193 FNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
L KK+D ++ DE + ++ +R+ A+ + E K
Sbjct: 395 EALLGKKLD--EWKTDEKTVLVLLERVSDAQRMATRELK 431
Score = 160 bits (404), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 147/502 (29%), Positives = 203/502 (40%), Gaps = 179/502 (35%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
ET+ A + +KT T+IQ+ V+P A R DI+G AETGSGKT AF +PIL G++ K
Sbjct: 48 ETLQEACDRLEWKTATRIQASVLPEAFEGR-DIIGLAETGSGKTGAFCLPILQGLLRK-- 104
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
P VK T ALIL PTRELA Q+ +
Sbjct: 105 -P-------------------------------VKGT----AALILTPTRELAFQILQVV 128
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYK 336
G+ CVVGG+ Q L + PH+++ATPGRL L H T+ L K
Sbjct: 129 QGLGQAMGATAVCVVGGVDRTSQAIALGRNPHVVIATPGRL-----LDHLKDTKGFNLNK 183
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396
+ YLV+DE DRM+ EL ILD + P Q
Sbjct: 184 VRYLVLDEADRMLSMDFEEELHQILDNM-------PEQ---------------------- 214
Query: 397 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 456
RQT +FSAT+T + +K ++ S +K P V ++
Sbjct: 215 ----RQTLLFSATMTTQV----------AKLERAS--------------LKDPVKVQVST 246
Query: 457 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL------CEEIQDLL----NIKSPK 506
K K L +S + KD YL Y I +H G+++ C +Q L N+ P
Sbjct: 247 KFQTPKQLLQSYLFIPAKYKDCYLTYLINEHAGQSILVFGATCNNVQRLALMLRNLGFPA 306
Query: 507 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 566
+ C H + D KRL L
Sbjct: 307 V-------------------CLHGQMDQS----------------------KRLGAL--- 322
Query: 567 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626
Q+ + DR +ILL TDVA+RGLD+P ++ VI++ +P +
Sbjct: 323 ---------------QKFSSGDR------TILLCTDVASRGLDLPQVDLVINFDLPGHGK 361
Query: 627 IYIHRSGRTARANNEGLTVVLI 648
YIHR GRTARA G + ++
Sbjct: 362 EYIHRVGRTARAGKSGRAIAMV 383
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA Q+ + G+ CVVGG+ Q L + PH+++ATPG L
Sbjct: 111 ALILTPTRELAFQILQVVQGLGQAMGATAVCVVGGVDRTSQAIALGRNPHVVIATPGRL 169
>gi|403286623|ref|XP_003934579.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Saimiri
boliviensis boliviensis]
Length = 547
Score = 222 bits (565), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 156/470 (33%), Positives = 240/470 (51%), Gaps = 79/470 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 121 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 178
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 179 --LETP------------------------------------QRLFALVLTPTRELAFQI 200
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 201 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 260
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 261 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 301
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 302 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 348
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 349 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 408
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 409 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 468
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK---SIEYLESKIKKNRP 1237
++ + + KK LP FP + + ++ +R+ A+ +E E KK RP
Sbjct: 469 RIEHLIGKK--LPVFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRP 516
Score = 177 bits (448), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 215/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 121 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 178
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 179 --LETP------------------------------------QRLFALVLTPTRELAFQI 200
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 201 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 260
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 261 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 290
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 291 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 320
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 321 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 355
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 356 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 385
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 386 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 445
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 446 TARAGRSGKAITFVTQYDVEL 466
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 187 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 245
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 246 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 296
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 297 SATMTKKVQKLQ 308
Score = 41.2 bits (95), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 438 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLTERV 495
Query: 1299 DLAK---SIEYLESKIKKNRP 1316
A+ +E E KK RP
Sbjct: 496 AEAQRFARMELREHGEKKKRP 516
>gi|342877843|gb|EGU79271.1| hypothetical protein FOXB_10221 [Fusarium oxysporum Fo5176]
Length = 485
Score = 222 bits (565), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 144/464 (31%), Positives = 233/464 (50%), Gaps = 81/464 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I + + A + +K PT IQ +P AL R DI+G AETGSGKT AF +P+L ++
Sbjct: 65 LGIVDALCEACEKLNYKYPTPIQEKSIPVALEGR-DIIGLAETGSGKTAAFALPVLQALL 123
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K + L+ L+LAPTRELA Q+
Sbjct: 124 DKPQ---------------------------------------PLFGLVLAPTRELATQI 144
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A +VGG+ Q L K PHI+VATPGRL + H T+
Sbjct: 145 GQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVD-----HLEKTKGF 199
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + YL++DE DR+++ P + IL + + R+T++FSAT++ ++
Sbjct: 200 SLRTLKYLIMDEADRLLDMDFGPSIDKILKFI-----PRERRTYLFSATISSKIE----- 249
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSY 1068
S++R +++ P V ++ K TL + I H KD Y
Sbjct: 250 ---------------SLQRA----SLRDPVRVSISSNKYQTVSTLLQHYIFIPHVRKDVY 290
Query: 1069 LYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y I +H G+ T++F ++ +R++ LL L +PLH ++Q RL L++FR
Sbjct: 291 LIYLINEHVGKSTIIFTRTVWETQRISILLRTLGFGAIPLHGQLSQTSRLGALNKFRSGT 350
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDIP ++ V++Y +P+ S+ YIHR GRTARA G+ + ++ ++
Sbjct: 351 RDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISVVTQYDVE 410
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ ++ +L KK L ++P ++ + + R++ A+ +E K
Sbjct: 411 IFTRIEAALGKK--LTEYPTEKEEVFTFQTRVEEAQRHARVEMK 452
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 140/507 (27%), Positives = 216/507 (42%), Gaps = 161/507 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I + + A + +K PT IQ +P AL R DI+G AETGSGKT AF +P+L ++
Sbjct: 65 LGIVDALCEACEKLNYKYPTPIQEKSIPVALEGR-DIIGLAETGSGKTAAFALPVLQALL 123
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K + L+ L+LAPTRELA Q+
Sbjct: 124 DKPQ---------------------------------------PLFGLVLAPTRELATQI 144
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A +VGG+ Q L K PHI+VATPGRL + H T+
Sbjct: 145 GQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVD-----HLEKTKGF 199
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YL++DE DR+++ P + IL + PR+
Sbjct: 200 SLRTLKYLIMDEADRLLDMDFGPSIDKILKFI-------PRE------------------ 234
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+T++FSAT++ ++ S++R +++ P V
Sbjct: 235 --------RRTYLFSATISSKIE--------------------SLQR----ASLRDPVRV 262
Query: 453 DLTE-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
++ K TL + I H KD YL Y I +H G++
Sbjct: 263 SISSNKYQTVSTLLQHYIFIPHVRKDVYLIYLINEHVGKS-------------------- 302
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
I T+T+ E+ +R++ LL L
Sbjct: 303 -TIIFTRTVWET----------------------------------QRISILLRTLGFGA 327
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH ++Q RL L++FR IL+ATDVAARGLDIP ++ V++Y +P+ S+ YIHR
Sbjct: 328 IPLHGQLSQTSRLGALNKFRSGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHR 387
Query: 632 SGRTARANNEGLTVVLIESDEIPLKTK 658
GRTARA G+ + ++ ++ + T+
Sbjct: 388 VGRTARAGKSGIAISVVTQYDVEIFTR 414
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G ++ A +VGG+ Q L K PHI+VATPG L
Sbjct: 131 GLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRL 189
>gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing
protein, putative [Candida dubliniensis CD36]
gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
Length = 499
Score = 222 bits (565), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/466 (31%), Positives = 238/466 (51%), Gaps = 73/466 (15%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
+ D ++ + + N+ ++ ++ F PT IQS +P AL KDI+G A+TGSGK
Sbjct: 78 DPDAELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEG-KDIIGLAQTGSGK 136
Query: 820 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879
T AF IPIL + + + +A
Sbjct: 137 TAAFAIPILQSLWH---------------------------------------AQQPYFA 157
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA Q+++ G ++ +C+VGGM Q R L + PHI+VATPGR+ +
Sbjct: 158 LVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHIIVATPGRIMD 217
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
++ H L + YLV+DE DR+++ P L IL + + R T++FSAT+
Sbjct: 218 HLE--HTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIK-----RITYLFSATM 270
Query: 1000 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 1059
T+ I++LQ ++ +P V ++ K L +S +L
Sbjct: 271 TNK-----------------------IEKLQRA-SLHNPVKVSVSSKYQTADNLIQSMML 306
Query: 1060 CKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
K++ L + + + G+++ VF +++ +R L +L + +PLH ++Q QRL
Sbjct: 307 VNDGYKNTILIHLLNEFIGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLG 366
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
+L++F+ +IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++
Sbjct: 367 SLNKFKSNQANILVATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSI 426
Query: 1179 VLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
LI ++ +Y+++ N L KK+ D P E +L + +D A +
Sbjct: 427 SLITQYDLEMYLRIENVLGKKLPKEDKPPKE-ILDALHVHVDKATA 471
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 138/506 (27%), Positives = 217/506 (42%), Gaps = 154/506 (30%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
+ D ++ + + N+ ++ ++ F PT IQS +P AL KDI+G A+TGSGK
Sbjct: 78 DPDAELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEG-KDIIGLAQTGSGK 136
Query: 203 TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262
T AF IPIL + + + +A
Sbjct: 137 TAAFAIPILQSLWH---------------------------------------AQQPYFA 157
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA Q+++ G ++ +C+VGGM Q R L + PHI+VATPGR+ +
Sbjct: 158 LVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHIIVATPGRIMD 217
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
L H L + YLV+DE DR+++ P L IL + +
Sbjct: 218 --HLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIK--------------- 260
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 442
R T++FSAT+T+ I++LQ
Sbjct: 261 ------------------RITYLFSATMTN-----------------------KIEKLQR 279
Query: 443 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNI 502
++ +P V ++ K L +S +L K++ L + + + G+++
Sbjct: 280 -ASLHNPVKVSVSSKYQTADNLIQSMMLVNDGYKNTILIHLLNEFIGKSI---------- 328
Query: 503 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 562
I T+T+ H ++ + L R L F N++ +L+Q
Sbjct: 329 -----------IVFTRTVA-------HAQRTALL--------ARILGF-NAVPLHGQLSQ 361
Query: 563 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 622
QRL +L++F+ +IL+ATDVAARGLDIP ++ VI+Y +P
Sbjct: 362 ------------------SQRLGSLNKFKSNQANILVATDVAARGLDIPSVDIVINYDIP 403
Query: 623 RTSEIYIHRSGRTARANNEGLTVVLI 648
S+ YIHR GRTARA G ++ LI
Sbjct: 404 TDSKAYIHRVGRTARAGRSGKSISLI 429
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+ AL+LAPTRELA Q+++ G ++ +C+VGGM Q R L + PHI+VATPG
Sbjct: 155 YFALVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHIIVATPG 213
>gi|344243858|gb|EGV99961.1| putative ATP-dependent RNA helicase DDX47 [Cricetulus griseus]
Length = 586
Score = 222 bits (565), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 150/458 (32%), Positives = 235/458 (51%), Gaps = 76/458 (16%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 161 GVTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL-- 217
Query: 834 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
LE P +L+AL+L PTRELA Q+
Sbjct: 218 -LETP------------------------------------QRLFALVLTPTRELAFQIS 240
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELY 952
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 241 EQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPHIVIATPGRLIDHLENTKGFNLRAL- 299
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 300 --KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT------------ 340
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 341 ----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI 388
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SIL
Sbjct: 389 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 448
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
LATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+ +
Sbjct: 449 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 508
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
+ + + KK LP FP + + ++ +R+ A+ +E
Sbjct: 509 IEHLIGKK--LPVFPTQDEEVMMLTERVSEAQRFARME 544
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 154/552 (27%), Positives = 235/552 (42%), Gaps = 168/552 (30%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 161 GVTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL-- 217
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
LE P +L+AL+L PTRELA Q+
Sbjct: 218 -LETP------------------------------------QRLFALVLTPTRELAFQIS 240
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELY 335
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 241 EQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPHIVIATPGRLIDHLENTKGFNLRAL- 299
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
YLV+DE DR++ E+ IL + PR
Sbjct: 300 --KYLVMDEADRILNMDFETEVDKILKVI-------PRD--------------------- 329
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+TF+FSAT+T KKV K ++R +K+P ++
Sbjct: 330 -----RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAVS 360
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K + L + + KD+YL Y + + G
Sbjct: 361 SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG-------------------------- 394
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+S++ + C++ ++ +R LL L + +PLH
Sbjct: 395 -----------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPLH 425
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRT
Sbjct: 426 GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRT 485
Query: 636 ARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEERAEADKEKTEDIN 684
ARA G + + ++ L + F Q+EE ER ++ ++ +
Sbjct: 486 ARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDEEVMMLTERV-SEAQRFARME 544
Query: 685 VTVSSKKKKLKR 696
+ +KKK KR
Sbjct: 545 LREHGEKKKRKR 556
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 226 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPHIVIATPGRL- 284
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 285 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 335
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 336 SATMTKKVQKLQ 347
Score = 40.4 bits (93), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 477 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDEEVMMLTERV 534
Query: 1299 DLAKSIEYLESKIKKNRPDNWLEKAAKDMD 1328
A+ +E + + E A D D
Sbjct: 535 SEAQRFARMELREHGEKKKRKREDAGDDDD 564
>gi|344234177|gb|EGV66047.1| hypothetical protein CANTEDRAFT_129471 [Candida tenuis ATCC 10573]
gi|344234178|gb|EGV66048.1| ATP-dependent rRNA helicase RRP3 [Candida tenuis ATCC 10573]
Length = 485
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 150/476 (31%), Positives = 242/476 (50%), Gaps = 75/476 (15%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +F++ I+ ++ F PT IQ+ +P AL A KDI+G A+TGSGKT AF IPIL
Sbjct: 75 FAEFDLIPEILESIQAMKFTKPTPIQAESIPHAL-AGKDIIGLAQTGSGKTAAFAIPILQ 133
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ + + ++L+LAPTRELA
Sbjct: 134 ALWH---------------------------------------AKTPYFSLVLAPTRELA 154
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q++ G ++ C+VGGM Q R L + PH++VATPGR+ + ++ H
Sbjct: 155 FQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHVIVATPGRITDHLE--HTKGF 212
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + YLV+DE DR+++ P L IL + + TS ++FSAT+T+
Sbjct: 213 SLKNLKYLVMDEADRLLDMDFGPALDKILKVIPVERTS-----YLFSATMTNK------- 260
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
I +LQ ++K+P V ++ K L +S +L K+++L
Sbjct: 261 ----------------IAKLQRA-SLKNPVRVAVSNKYQTADNLVQSMMLVSDGYKNTFL 303
Query: 1070 YYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ + + G+++ VF ++++ +R L +L S +PL+ ++Q QRL L++F+
Sbjct: 304 VHLLNEFMGKSIIVFTRTVANSERTAILTRLLGFSSVPLNGQLSQTQRLGALNKFKSGKA 363
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 364 NILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEL 423
Query: 1189 YIKMFNSLEKKVDLPDFPI-DESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHR 1243
Y+++ + L KK LP P + VL+ + +D A + + K R N HR
Sbjct: 424 YLRIESVLGKK--LPKDPSPSKQVLNTLHVHVDRAVAEAIRQMKDIHERRGNRNHR 477
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 139/503 (27%), Positives = 220/503 (43%), Gaps = 154/503 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +F++ I+ ++ F PT IQ+ +P AL A KDI+G A+TGSGKT AF IPIL
Sbjct: 75 FAEFDLIPEILESIQAMKFTKPTPIQAESIPHAL-AGKDIIGLAQTGSGKTAAFAIPILQ 133
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ + + ++L+LAPTRELA
Sbjct: 134 ALWH---------------------------------------AKTPYFSLVLAPTRELA 154
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q++ G ++ C+VGGM Q R L + PH++VATPGR+ + ++ H
Sbjct: 155 FQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHVIVATPGRITDHLE--HTKGF 212
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YLV+DE DR+++ P L IL + + TS
Sbjct: 213 SLKNLKYLVMDEADRLLDMDFGPALDKILKVIPVERTS---------------------- 250
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
++FSAT+T+ I +LQ ++K+P V
Sbjct: 251 -----------YLFSATMTN-----------------------KIAKLQR-ASLKNPVRV 275
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
++ K L +S +L K+++L + + + G+++
Sbjct: 276 AVSNKYQTADNLVQSMMLVSDGYKNTFLVHLLNEFMGKSI-------------------- 315
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
I T+T+ S+ RT + LT+LL S +
Sbjct: 316 -IVFTRTVANSE---------------------RTAI----------LTRLLGF---SSV 340
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PL+ ++Q QRL L++F+ +IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR
Sbjct: 341 PLNGQLSQTQRLGALNKFKSGKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRV 400
Query: 633 GRTARANNEGLTVVLIESDEIPL 655
GRTARA G ++ L+ ++ L
Sbjct: 401 GRTARAGKSGKSISLVTQYDLEL 423
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ +L+LAPTRELA Q++ G ++ C+VGGM Q R L + PH++VATPG
Sbjct: 142 YFSLVLAPTRELAFQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHVIVATPGR 201
Query: 1414 LS 1415
++
Sbjct: 202 IT 203
>gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS 112818]
gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97]
Length = 474
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 150/468 (32%), Positives = 229/468 (48%), Gaps = 89/468 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I +++ A G+K PT IQ+ +P AL R D+VG AETGSGKT AF +PIL +
Sbjct: 54 LGIIDSLCDACTSLGYKNPTPIQAESIPLALQGR-DLVGLAETGSGKTAAFALPILQAL- 111
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+E P + L+LAPTRELA+Q+
Sbjct: 112 --MEKP------------------------------------QPYFGLVLAPTRELAVQI 133
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 134 TEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE--NTKGFSLR 191
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLK 1004
+ YLV+DE DR+++ P L IL + + R+T++FSATL+ SL
Sbjct: 192 NLKYLVMDEADRLLDLDFGPVLDKILKVL-----PRERRTYLFSATLSSKVESLQRASLS 246
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
N L + +K + VS TL +S I H
Sbjct: 247 NPLRVSISSNKYQTVS-------------------------------TLLQSYIFIPHKY 275
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD YL + + + PG+T ++F +++ +RL+ LL L +PLH ++Q RL L +F
Sbjct: 276 KDIYLVHILNEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKF 335
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
R + IL+ATDVAARGLDIP ++ V+++ +P S+ YIHR GRTARA G + ++
Sbjct: 336 RSGSRDILVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
E+ ++ ++ +L K+ LP+ ++ + ++ R+ A+ + E K
Sbjct: 396 YEVEIWQRIEAALGKQ--LPEHKTEKEEVMVLSDRVGDAQRLAVTEMK 441
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 155/556 (27%), Positives = 226/556 (40%), Gaps = 173/556 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I +++ A G+K PT IQ+ +P AL R D+VG AETGSGKT AF +PIL +
Sbjct: 54 LGIIDSLCDACTSLGYKNPTPIQAESIPLALQGR-DLVGLAETGSGKTAAFALPILQAL- 111
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+E P + L+LAPTRELA+Q+
Sbjct: 112 --MEKP------------------------------------QPYFGLVLAPTRELAVQI 133
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 134 TEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE--NTKGFSLR 191
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ P L IL + PR+
Sbjct: 192 NLKYLVMDEADRLLDLDFGPVLDKILKVL-------PRE--------------------- 223
Query: 396 ETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+T++FSATL+ SL N L + +K + VS
Sbjct: 224 -----RRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVS---------------- 262
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
TL +S I H KD YL + + + PG+T
Sbjct: 263 ---------------TLLQSYIFIPHKYKDIYLVHILNEFPGQT---------------- 291
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
I T+T+ E+ +RL+ LL L
Sbjct: 292 -----TIIFTRTVNET----------------------------------QRLSILLRAL 312
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+PLH ++Q RL L +FR + IL+ATDVAARGLDIP ++ V+++ +P S+
Sbjct: 313 GFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDIPAVDLVLNFDLPSDSKT 372
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIP----LKTKFNLQEEENNEEEERAEADKEKTEDI 683
YIHR GRTARA G + ++ E+ ++ Q E+ E+E ++ D
Sbjct: 373 YIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALGKQLPEHKTEKEEVMVLSDRVGDA 432
Query: 684 NVTVSSKKKKLKRKQN 699
++ K L K+
Sbjct: 433 QRLAVTEMKDLHEKRG 448
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ L+LAPTRELA+Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 118 YFGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGR 177
Query: 1414 L 1414
L
Sbjct: 178 L 178
>gi|395333626|gb|EJF66003.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 461
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 148/463 (31%), Positives = 234/463 (50%), Gaps = 88/463 (19%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+ ++ AL Q +K PT IQ+ +P AL R DI+G A TGSGKT AF +PIL + E
Sbjct: 32 DPLLEALEQMKYKAPTDIQAEALPHALQGR-DIIGVASTGSGKTAAFALPILQKL---WE 87
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
+P L+A ++APTRELA Q+
Sbjct: 88 DP------------------------------------KGLFACVIAPTRELAFQITQQF 111
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-----L 951
G V+ A ++GG+ + Q L K PH++VATPGRL E HL E L
Sbjct: 112 ESIGSAMGVRCATIIGGVDIQSQKIALAKKPHVIVATPGRLLE-------HLEETKGFSL 164
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+ +LV+DE DR+++ P L IL + + R T++FSAT+T
Sbjct: 165 RSLKFLVLDEADRLLDMDFGPILDKILKLI-----PKERTTYLFSATMT----------- 208
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
+K K+ + ++ +P V++ K TL + +L +KD +L Y
Sbjct: 209 --TKVAKLQRA-----------SLSNPVRVEVNSKYSTVSTLLQYYLLMPLPQKDVHLIY 255
Query: 1072 F---ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ Q+ ++F ++ +RL+ +L L +PLH ++Q RL L +F+
Sbjct: 256 LANTLAQN--SMIIFTRTVHDAQRLSIMLRSLGFPAIPLHGQLSQSARLGALGKFKAGGR 313
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
SIL+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 314 SILVATDVASRGLDIPSVDIVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVEL 373
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+++ +EKK++L +P+D+ ++L+++R+D A + E K
Sbjct: 374 VLRIEQVIEKKMEL--WPVDKDEVALLRERVDEAGRLAATELK 414
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 138/501 (27%), Positives = 211/501 (42%), Gaps = 164/501 (32%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+ ++ AL Q +K PT IQ+ +P AL R DI+G A TGSGKT AF +PIL + E
Sbjct: 32 DPLLEALEQMKYKAPTDIQAEALPHALQGR-DIIGVASTGSGKTAAFALPILQKL---WE 87
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
+P L+A ++APTRELA Q+
Sbjct: 88 DP------------------------------------KGLFACVIAPTRELAFQITQQF 111
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-----L 334
G V+ A ++GG+ + Q L K PH++VATPGRL E HL E L
Sbjct: 112 ESIGSAMGVRCATIIGGVDIQSQKIALAKKPHVIVATPGRLLE-------HLEETKGFSL 164
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+ +LV+DE DR+++ P L IL + P++
Sbjct: 165 RSLKFLVLDEADRLLDMDFGPILDKILKLI-------PKE-------------------- 197
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R T++FSAT+T +K K+ + ++ +P V++
Sbjct: 198 ------RTTYLFSATMT-------------TKVAKLQRA-----------SLSNPVRVEV 227
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
K TL + +L +KD +L Y
Sbjct: 228 NSKYSTVSTLLQYYLLMPLPQKDVHLIY-------------------------------- 255
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+ TL ++ ++ +F ++ +RL+ +L L +PL
Sbjct: 256 -LANTLAQNSMI----------------------IFTRTVHDAQRLSIMLRSLGFPAIPL 292
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H ++Q RL L +F+ SIL+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GR
Sbjct: 293 HGQLSQSARLGALGKFKAGGRSILVATDVASRGLDIPSVDIVINYDIPTHSKDYIHRVGR 352
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G ++ L+ ++ L
Sbjct: 353 TARAGRSGKSITLVTQYDVEL 373
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A ++APTRELA Q+ G V+ A ++GG+ + Q L K PH++VATPG L
Sbjct: 94 ACVIAPTRELAFQITQQFESIGSAMGVRCATIIGGVDIQSQKIALAKKPHVIVATPGRL 152
Score = 49.3 bits (116), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ ++ L +++ +EKK++L +P+D+ ++L+++R+
Sbjct: 345 DYIHRVGRTARAGRSGKSITLVTQYDVELVLRIEQVIEKKMEL--WPVDKDEVALLRERV 402
Query: 1299 DLAKSIEYLESK 1310
D A + E K
Sbjct: 403 DEAGRLAATELK 414
>gi|291234557|ref|XP_002737216.1| PREDICTED: CG9143-like [Saccoglossus kowalevskii]
Length = 379
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 137/183 (74%), Gaps = 1/183 (0%)
Query: 1064 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
+KD YLYYF+LQ+PGRTLVF NSI ++RL +LT+L+C+PLPLHA+M+Q+QRLKNL+RF
Sbjct: 84 DKDFYLYYFLLQYPGRTLVFTNSIDCIRRLISILTLLQCNPLPLHANMHQKQRLKNLERF 143
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ +LLATDVAARGLDIP ++HV+HY VPRTSE Y+HRSGRTARA GL+L+LI
Sbjct: 144 TSNPHGLLLATDVAARGLDIPNVQHVVHYQVPRTSETYVHRSGRTARATKAGLSLMLIGP 203
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN-WLH 1242
D+ Y +M +L K D+P FP++ L+ +K+R+ L + I+ ++ K +K + N W
Sbjct: 204 DDSGFYRRMCKTLNKDDDMPVFPVELKYLAAVKERVKLTRKIDKMDHKFQKLKHQNDWFT 263
Query: 1243 RSG 1245
R+
Sbjct: 264 RNA 266
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 80/122 (65%), Positives = 103/122 (84%)
Query: 531 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 590
+KD YLYYF+LQ+PGRTLVF NSI ++RL +LT+L+C+PLPLHA+M+Q+QRLKNL+RF
Sbjct: 84 DKDFYLYYFLLQYPGRTLVFTNSIDCIRRLISILTLLQCNPLPLHANMHQKQRLKNLERF 143
Query: 591 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIES 650
+ +LLATDVAARGLDIP ++HV+HY VPRTSE Y+HRSGRTARA GL+++LI
Sbjct: 144 TSNPHGLLLATDVAARGLDIPNVQHVVHYQVPRTSETYVHRSGRTARATKAGLSLMLIGP 203
Query: 651 DE 652
D+
Sbjct: 204 DD 205
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+ ++HRSGRTARA GL+L+LI D+ Y +M +L K D+P FP++ L+ +K+R
Sbjct: 179 ETYVHRSGRTARATKAGLSLMLIGPDDSGFYRRMCKTLNKDDDMPVFPVELKYLAAVKER 238
Query: 1298 IDLAKSIEYLESKIKKNRPDN-WLEKAAKDMDIIIDDENL 1336
+ L + I+ ++ K +K + N W + A+++DI +D++ L
Sbjct: 239 VKLTRKIDKMDHKFQKLKHQNDWFTRNAEELDIELDEDCL 278
>gi|403214400|emb|CCK68901.1| hypothetical protein KNAG_0B04660 [Kazachstania naganishii CBS 8797]
Length = 494
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 228/449 (50%), Gaps = 74/449 (16%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+PE ++ A + PT IQS +P AL KDI+G A+TGSGKT AF IPIL
Sbjct: 82 VPE-LLEACKNLNYSKPTPIQSRSIPPALKG-KDIIGLAQTGSGKTAAFAIPIL------ 133
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
N D+ YA IL+PTRELA Q++
Sbjct: 134 --NSLWHDQQ-------------------------------PYYACILSPTRELAQQIKE 160
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
G V+ C+VGGM+ Q R L + PHI++ TPGRL + ++ + L +
Sbjct: 161 TFDSLGSLMGVRSVCIVGGMNMMDQARDLMRKPHIIIGTPGRLMDHLE--NTRGFSLRNL 218
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
YLV+DE DR+++ P +LDR+ +Q R T++FSAT+T S
Sbjct: 219 KYLVMDEADRLLDMEFGP----VLDRILKIIPTQGRTTYLFSATMT-------------S 261
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K+ + ++ +P ++ K TL ++ ++ KD+YL Y +
Sbjct: 262 KIDKLQRA-----------SLTNPVKCAVSTKYQTVDTLVQTLMVVPGGVKDTYLVYLLN 310
Query: 1075 QHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+ G++++ F + ++ +R++ L +L+ S LH +NQ QR LD F+ SIL+A
Sbjct: 311 EFIGKSMIIFTRTKANAERISGLANLLQFSATALHGDLNQNQRTGALDLFKAGRRSILVA 370
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L +++
Sbjct: 371 TDVAARGLDIPSVDVVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 430
Query: 1194 NSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
L KK LP +D+ ++ ++ +D A
Sbjct: 431 EVLGKK--LPKENVDKDIVLALRDSVDKA 457
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 208/498 (41%), Gaps = 154/498 (30%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+PE ++ A + PT IQS +P AL KDI+G A+TGSGKT AF IPIL
Sbjct: 82 VPE-LLEACKNLNYSKPTPIQSRSIPPALKG-KDIIGLAQTGSGKTAAFAIPIL------ 133
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
N D+ YA IL+PTRELA Q++
Sbjct: 134 --NSLWHDQQ-------------------------------PYYACILSPTRELAQQIKE 160
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
G V+ C+VGGM+ Q R L + PHI++ TPGRL + ++ + L +
Sbjct: 161 TFDSLGSLMGVRSVCIVGGMNMMDQARDLMRKPHIIIGTPGRLMDHLE--NTRGFSLRNL 218
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
YLV+DE DR+++ E +LDR+
Sbjct: 219 KYLVMDEADRLLDM--------------------------------EFGPVLDRILKIIP 246
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
+Q R T++FSAT+T SK K+ + ++ +P ++ K
Sbjct: 247 TQGRTTYLFSATMT-------------SKIDKLQRA-----------SLTNPVKCAVSTK 282
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
TL ++ ++ KD+YL Y + + G+++ I T
Sbjct: 283 YQTVDTLVQTLMVVPGGVKDTYLVYLLNEFIGKSM---------------------IIFT 321
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+T ++ IS + L Q S LH
Sbjct: 322 RTKANAE----------------------------RISGLANLLQF------SATALHGD 347
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+NQ QR LD F+ SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTAR
Sbjct: 348 LNQNQRTGALDLFKAGRRSILVATDVAARGLDIPSVDVVINYDIPVDSKSYIHRVGRTAR 407
Query: 638 ANNEGLTVVLIESDEIPL 655
A G ++ L+ ++ L
Sbjct: 408 AGRSGKSISLVSQYDLEL 425
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A IL+PTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ TPG
Sbjct: 143 YYACILSPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDQARDLMRKPHIIIGTPGR 202
Query: 1414 L 1414
L
Sbjct: 203 L 203
>gi|427789491|gb|JAA60197.1| Putative atp-dependent rna helicase ddx47 [Rhipicephalus pulchellus]
Length = 465
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 149/447 (33%), Positives = 231/447 (51%), Gaps = 75/447 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q +K PTKIQ +P AL R D++G AETGSGKT +F +PIL +
Sbjct: 30 LGVVDVLCEACEQLKWKAPTKIQREALPVALQGR-DVIGLAETGSGKTASFALPILQAL- 87
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 88 --LETP------------------------------------QRLFALVLTPTRELAFQI 109
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G VK A +VGG+ Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 110 SEQFEALGASIGVKSAVIVGGIDMMTQALTLAKKPHVIIATPGRLVDHLENTKGFNLKSL 169
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL RV E R+T+++SAT+T
Sbjct: 170 ---KYLVMDEADRILNMDFEEEVDKIL-RVIPRE----RRTYLYSATMT----------- 210
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +++ P V+++ K + L + + KD YL +
Sbjct: 211 -----KKVQK----LQRA----SLRDPVKVEVSSKYQTVEKLMQYYLFIPAKFKDVYLVH 257
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + +VFC++ S+ +R LL L + +PLH M Q +RL L +F+ +N SI
Sbjct: 258 LLNELAGNSFMVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGALTKFKSKNRSI 317
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L+ATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ LY
Sbjct: 318 LIATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQ 377
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKK 1217
++ + KK+ L + ++E V+SL+++
Sbjct: 378 RIEQLIGKKLPLYE-TVEEEVMSLVER 403
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/501 (27%), Positives = 214/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q +K PTKIQ +P AL R D++G AETGSGKT +F +PIL +
Sbjct: 30 LGVVDVLCEACEQLKWKAPTKIQREALPVALQGR-DVIGLAETGSGKTASFALPILQAL- 87
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 88 --LETP------------------------------------QRLFALVLTPTRELAFQI 109
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G VK A +VGG+ Q L K PH+++ATPGRL + ++ F+L L
Sbjct: 110 SEQFEALGASIGVKSAVIVGGIDMMTQALTLAKKPHVIIATPGRLVDHLENTKGFNLKSL 169
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR+
Sbjct: 170 ---KYLVMDEADRILNMDFEEEVDKILRVI-------PRE-------------------- 199
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+T+++SAT+T KKV K ++R +++ P V++
Sbjct: 200 ------RRTYLYSATMT----------------KKVQK----LQR----ASLRDPVKVEV 229
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD YL + + + G
Sbjct: 230 SSKYQTVEKLMQYYLFIPAKFKDVYLVHLLNELAG------------------------- 264
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ S+ +R LL L + +PL
Sbjct: 265 ------------------NSFMVF------------CSTCSNTQRTALLLRNLGFTAIPL 294
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M Q +RL L +F+ +N SIL+ATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 295 HGQMGQAKRLGALTKFKSKNRSILIATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGR 354
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 355 TARAGRSGKAITFVTQYDVEL 375
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G VK A +VGG+ Q L K PH+++ATPG L
Sbjct: 96 ALVLTPTRELAFQISEQFEALGASIGVKSAVIVGGIDMMTQALTLAKKPHVIIATPGRLV 155
Query: 1415 ----SLKRIDLAKSIEYL 1428
+ K +L KS++YL
Sbjct: 156 DHLENTKGFNL-KSLKYL 172
>gi|152060562|sp|A4RGD1.1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 538
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 226/463 (48%), Gaps = 93/463 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I E + A FK PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 115 LGIVEPLCEACEALKFKKPTPIQEQAIPLALQGR-DVIGIAETGSGKTAAFALPILQSL- 172
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P L+ L+LAPTRELA Q+
Sbjct: 173 --LEKP------------------------------------QPLFGLVLAPTRELAAQI 194
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A VVGG+ Q L K PHI+VATPGRL L H T+
Sbjct: 195 GQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPHIVVATPGRL-----LDHLEKTKGF 249
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH-------- 1001
L + +LV+DE DR+++ P ILD++ + + R+TF+FSAT++
Sbjct: 250 SLRSLKFLVMDEADRLLDLDFGP----ILDKI-LKFLPRERRTFLFSATMSSKVESLQRA 304
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
SL++ L + S+ K VS TL ++ +
Sbjct: 305 SLRDPLKVSVSSSQEKTVS-------------------------------TLIQNPLFIP 333
Query: 1062 HDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
H KD YL Y + G+T +VF +++ +R++ LL L +PLH ++Q RL L
Sbjct: 334 HKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGAL 393
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
++F+ ++ IL+ATDVAARGLDIP ++ VI++ +P+ S YIHR GRTARA G + +
Sbjct: 394 NKFKARSRDILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISI 453
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
I ++ L++++ + LP F D+ + + K+R++ A+
Sbjct: 454 ITQYDLELWLRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQ 496
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 147/504 (29%), Positives = 205/504 (40%), Gaps = 175/504 (34%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I E + A FK PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 115 LGIVEPLCEACEALKFKKPTPIQEQAIPLALQGR-DVIGIAETGSGKTAAFALPILQSL- 172
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P L+ L+LAPTRELA Q+
Sbjct: 173 --LEKP------------------------------------QPLFGLVLAPTRELAAQI 194
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A VVGG+ Q L K PHI+VATPGRL L H T+
Sbjct: 195 GQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPHIVVATPGRL-----LDHLEKTKGF 249
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + +LV+DE DR+++ P L IL + PR+
Sbjct: 250 SLRSLKFLVMDEADRLLDLDFGPILDKILKFL-------PRE------------------ 284
Query: 393 TMTETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
R+TF+FSAT++ SL++ L + S+ K VS
Sbjct: 285 --------RRTFLFSATMSSKVESLQRASLRDPLKVSVSSSQEKTVS------------- 323
Query: 445 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
TL ++ + H KD YL Y + G+T
Sbjct: 324 ------------------TLIQNPLFIPHKHKDVYLIYLANEFAGKT------------- 352
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
I T+T+ E+ +R++ LL
Sbjct: 353 --------TIVFTRTVNEA----------------------------------QRVSILL 370
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L +PLH ++Q RL L++F+ ++ IL+ATDVAARGLDIP ++ VI++ +P+
Sbjct: 371 RTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVINFDMPQD 430
Query: 625 SEIYIHRSGRTARANNEGLTVVLI 648
S YIHR GRTARA G + +I
Sbjct: 431 SMTYIHRVGRTARAGRSGRAISII 454
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G ++ A VVGG+ Q L K PHI+VATPG L
Sbjct: 181 GLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPHIVVATPGRL 239
>gi|350630756|gb|EHA19128.1| hypothetical protein ASPNIDRAFT_54204 [Aspergillus niger ATCC 1015]
Length = 467
Score = 221 bits (563), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 146/447 (32%), Positives = 215/447 (48%), Gaps = 87/447 (19%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ I E + A G+K PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 52 ELGIIEQLCEACETMGYKAPTPIQRESIPLALQGR-DLIGLAETGSGKTAAFALPILQAL 110
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+E P + L+LAPTRELA Q
Sbjct: 111 ---MEKP------------------------------------QPFFGLVLAPTRELAYQ 131
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
+ G V+ +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 132 ISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLDHLE--NTKGFSL 189
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SL 1003
+ YLV+DE DR+++ P L IL + + R+TF+FSAT++ SL
Sbjct: 190 RNLKYLVMDEADRLLDMDFGPLLDKILKVL-----PRERRTFLFSATMSSKVESLQRASL 244
Query: 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 1063
N L + SK + VS TL +S +
Sbjct: 245 SNPLRVSVSTSKYQTVS-------------------------------TLLQSYLFIPQK 273
Query: 1064 EKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 1122
KD YL Y + + G+ T++F +++ +RL LL L +PLH ++Q RL L +
Sbjct: 274 HKDLYLVYLLNEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGK 333
Query: 1123 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIE 1182
FR ++ +IL+ATDVAARGLDIP ++ V+++ +P S Y+HR GRTARA GL + +
Sbjct: 334 FRARSRNILVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVA 393
Query: 1183 SDEIPLYIKMFNSLEKKVDLPDFPIDE 1209
++ +++++ +L KK+ D P DE
Sbjct: 394 QYDVEVWLRIEGALGKKLKEYDCPKDE 420
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 143/507 (28%), Positives = 204/507 (40%), Gaps = 169/507 (33%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ I E + A G+K PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 52 ELGIIEQLCEACETMGYKAPTPIQRESIPLALQGR-DLIGLAETGSGKTAAFALPILQAL 110
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+E P + L+LAPTRELA Q
Sbjct: 111 ---MEKP------------------------------------QPFFGLVLAPTRELAYQ 131
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
+ G V+ +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 132 ISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLDHLE--NTKGFSL 189
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+ YLV+DE DR+++ P L IL + PR+
Sbjct: 190 RNLKYLVMDEADRLLDMDFGPLLDKILKVL-------PRE-------------------- 222
Query: 395 TETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 446
R+TF+FSAT++ SL N L + SK + VS
Sbjct: 223 ------RRTFLFSATMSSKVESLQRASLSNPLRVSVSTSKYQTVS--------------- 261
Query: 447 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPK 506
TL +S + KD YL Y + + G++
Sbjct: 262 ----------------TLLQSYLFIPQKHKDLYLVYLLNEFAGQS--------------- 290
Query: 507 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 566
I T+T+ E+ +RL LL
Sbjct: 291 ------TIIFTRTVNET----------------------------------QRLAFLLRA 310
Query: 567 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626
L +PLH ++Q RL L +FR ++ +IL+ATDVAARGLDIP ++ V+++ +P S
Sbjct: 311 LGFGAIPLHGQLSQSARLGALGKFRARSRNILVATDVAARGLDIPSVDVVLNFDLPGDSP 370
Query: 627 IYIHRSGRTARANNEGLTVVLIESDEI 653
Y+HR GRTARA GL + + ++
Sbjct: 371 SYVHRVGRTARAGKSGLAISFVAQYDV 397
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 34/61 (55%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ L+LAPTRELA Q+ G V+ +VGGM Q L K PHI+VATPG
Sbjct: 117 FFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGR 176
Query: 1414 L 1414
L
Sbjct: 177 L 177
>gi|402083740|gb|EJT78758.1| ATP-dependent rRNA helicase RRP3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 485
Score = 221 bits (563), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 148/463 (31%), Positives = 236/463 (50%), Gaps = 77/463 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I + + A G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 62 LGIVDPLCEACEALGYKQPTPIQTQAIPLALQGR-DVIGIAETGSGKTAAFALPILQSLL 120
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K + L+ L+LAPTRELA Q+
Sbjct: 121 DKPQ---------------------------------------PLFGLVLAPTRELAAQI 141
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A VVGG+ Q L K PH++VATPGRL L H T+
Sbjct: 142 GQAFEALGSLISLRCAVVVGGLDMVSQSIALGKKPHVVVATPGRL-----LDHLEKTKGF 196
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + YLV+DE DR+++ P ILD++ + + R+T++FSAT++ +++
Sbjct: 197 SLRSLKYLVMDEADRLLDLDFGP----ILDKI-LKFLPRERRTYLFSATMSSKVESL--- 248
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
++ S DP L+ ++ K K V TL ++ ++ H KD YL
Sbjct: 249 -------QRASLRDP----LRVSVSSKREKTV---------ATLLQNPLIIPHMHKDVYL 288
Query: 1070 YYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + + G+T ++F +++ +RL+ LL L +PLH ++Q RL L++F+ ++
Sbjct: 289 IYLVNEFAGQTTIIFTRTVNEAQRLSILLRTLSFGAIPLHGQLSQSMRLGALNKFKAKSR 348
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDIP ++ VI+Y +P S YIHR GRTARA G + ++ ++ L
Sbjct: 349 DILVATDVAARGLDIPEVDLVINYDLPGDSMTYIHRVGRTARAGRSGRAISIVTQYDVEL 408
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++++ + LP + D + + K+R++ A+ + E K
Sbjct: 409 WMRIEKAALDGRKLPTYQPDREEVMVFKERVEEAQRVARNEMK 451
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 145/503 (28%), Positives = 216/503 (42%), Gaps = 159/503 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I + + A G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 62 LGIVDPLCEACEALGYKQPTPIQTQAIPLALQGR-DVIGIAETGSGKTAAFALPILQSLL 120
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K + L+ L+LAPTRELA Q+
Sbjct: 121 DKPQ---------------------------------------PLFGLVLAPTRELAAQI 141
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A VVGG+ Q L K PH++VATPGRL L H T+
Sbjct: 142 GQAFEALGSLISLRCAVVVGGLDMVSQSIALGKKPHVVVATPGRL-----LDHLEKTKGF 196
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YLV+DE DR+++ P L IL + PR+
Sbjct: 197 SLRSLKYLVMDEADRLLDLDFGPILDKILKFL-------PRE------------------ 231
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+T++FSAT++ +++ ++ S DP L+ ++ K K V
Sbjct: 232 --------RRTYLFSATMSSKVES----------LQRASLRDP----LRVSVSSKREKTV 269
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
TL ++ ++ H KD YL Y + + G+T
Sbjct: 270 ---------ATLLQNPLIIPHMHKDVYLIYLVNEFAGQT--------------------- 299
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
I T+T+ E+ +RL+ LL L +
Sbjct: 300 TIIFTRTVNEA----------------------------------QRLSILLRTLSFGAI 325
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLH ++Q RL L++F+ ++ IL+ATDVAARGLDIP ++ VI+Y +P S YIHR
Sbjct: 326 PLHGQLSQSMRLGALNKFKAKSRDILVATDVAARGLDIPEVDLVINYDLPGDSMTYIHRV 385
Query: 633 GRTARANNEGLTVVLIESDEIPL 655
GRTARA G + ++ ++ L
Sbjct: 386 GRTARAGRSGRAISIVTQYDVEL 408
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G ++ A VVGG+ Q L K PH++VATPG L
Sbjct: 128 GLVLAPTRELAAQIGQAFEALGSLISLRCAVVVGGLDMVSQSIALGKKPHVVVATPGRL 186
>gi|358373394|dbj|GAA89992.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 471
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 150/450 (33%), Positives = 215/450 (47%), Gaps = 93/450 (20%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ I E + A G+K PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 56 ELGIIEQLCEACETMGYKAPTPIQRESIPLALQGR-DLIGLAETGSGKTAAFALPILQAL 114
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+E P + LILAPTRELA Q
Sbjct: 115 ---MEKP------------------------------------QPFFGLILAPTRELAYQ 135
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE- 950
+ G V+ +VGGM Q L K PHI+VATPGRL L H T+
Sbjct: 136 ISKSFESLGASLGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRL-----LDHLENTKG 190
Query: 951 --LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH------- 1001
L + YLV+DE DR+++ P L IL + + R+TF+FSAT++
Sbjct: 191 FSLRNLKYLVMDEADRLLDMDFGPLLDKILKVL-----PRERRTFLFSATMSSKVESLQR 245
Query: 1002 -SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 1060
SL N L + SK + VS TL +S +
Sbjct: 246 ASLSNPLRVSVSTSKYQTVS-------------------------------TLLQSYLFI 274
Query: 1061 KHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
KD YL Y + + G+ T++F +++ +RL LL L +PLH ++Q RL
Sbjct: 275 PQKHKDLYLVYLLNEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGA 334
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
L +FR ++ +IL+ATDVAARGLDIP ++ V+++ +P S Y+HR GRTARA GL +
Sbjct: 335 LGKFRARSRNILVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAIS 394
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDE 1209
+ ++ +++++ +L KK+ D P DE
Sbjct: 395 FVAQYDVEVWLRIEGALGKKLKEYDCPKDE 424
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 147/510 (28%), Positives = 204/510 (40%), Gaps = 175/510 (34%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ I E + A G+K PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 56 ELGIIEQLCEACETMGYKAPTPIQRESIPLALQGR-DLIGLAETGSGKTAAFALPILQAL 114
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+E P + LILAPTRELA Q
Sbjct: 115 ---MEKP------------------------------------QPFFGLILAPTRELAYQ 135
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE- 333
+ G V+ +VGGM Q L K PHI+VATPGRL L H T+
Sbjct: 136 ISKSFESLGASLGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRL-----LDHLENTKG 190
Query: 334 --LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L + YLV+DE DR+++ P L IL + PR+
Sbjct: 191 FSLRNLKYLVMDEADRLLDMDFGPLLDKILKVL-------PRE----------------- 226
Query: 392 VTMTETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL 443
R+TF+FSAT++ SL N L + SK + VS
Sbjct: 227 ---------RRTFLFSATMSSKVESLQRASLSNPLRVSVSTSKYQTVS------------ 265
Query: 444 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
TL +S + KD YL Y + + G++
Sbjct: 266 -------------------TLLQSYLFIPQKHKDLYLVYLLNEFAGQS------------ 294
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
I T+T+ E+ +RL L
Sbjct: 295 ---------TIIFTRTVNET----------------------------------QRLAFL 311
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
L L +PLH ++Q RL L +FR ++ +IL+ATDVAARGLDIP ++ V+++ +P
Sbjct: 312 LRALGFGAIPLHGQLSQSARLGALGKFRARSRNILVATDVAARGLDIPSVDVVLNFDLPG 371
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEI 653
S Y+HR GRTARA GL + + ++
Sbjct: 372 DSPSYVHRVGRTARAGKSGLAISFVAQYDV 401
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 34/61 (55%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ LILAPTRELA Q+ G V+ +VGGM Q L K PHI+VATPG
Sbjct: 121 FFGLILAPTRELAYQISKSFESLGASLGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGR 180
Query: 1414 L 1414
L
Sbjct: 181 L 181
>gi|389642833|ref|XP_003719049.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
gi|351641602|gb|EHA49465.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
Length = 562
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 226/463 (48%), Gaps = 93/463 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I E + A FK PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 139 LGIVEPLCEACEALKFKKPTPIQEQAIPLALQGR-DVIGIAETGSGKTAAFALPILQSL- 196
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P L+ L+LAPTRELA Q+
Sbjct: 197 --LEKP------------------------------------QPLFGLVLAPTRELAAQI 218
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A VVGG+ Q L K PHI+VATPGRL L H T+
Sbjct: 219 GQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPHIVVATPGRL-----LDHLEKTKGF 273
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH-------- 1001
L + +LV+DE DR+++ P ILD++ + + R+TF+FSAT++
Sbjct: 274 SLRSLKFLVMDEADRLLDLDFGP----ILDKI-LKFLPRERRTFLFSATMSSKVESLQRA 328
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
SL++ L + S+ K VS TL ++ +
Sbjct: 329 SLRDPLKVSVSSSQEKTVS-------------------------------TLIQNPLFIP 357
Query: 1062 HDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
H KD YL Y + G+T +VF +++ +R++ LL L +PLH ++Q RL L
Sbjct: 358 HKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGAL 417
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
++F+ ++ IL+ATDVAARGLDIP ++ VI++ +P+ S YIHR GRTARA G + +
Sbjct: 418 NKFKARSRDILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISI 477
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
I ++ L++++ + LP F D+ + + K+R++ A+
Sbjct: 478 ITQYDLELWLRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQ 520
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 147/504 (29%), Positives = 205/504 (40%), Gaps = 175/504 (34%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I E + A FK PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 139 LGIVEPLCEACEALKFKKPTPIQEQAIPLALQGR-DVIGIAETGSGKTAAFALPILQSL- 196
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P L+ L+LAPTRELA Q+
Sbjct: 197 --LEKP------------------------------------QPLFGLVLAPTRELAAQI 218
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A VVGG+ Q L K PHI+VATPGRL L H T+
Sbjct: 219 GQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPHIVVATPGRL-----LDHLEKTKGF 273
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + +LV+DE DR+++ P L IL + PR+
Sbjct: 274 SLRSLKFLVMDEADRLLDLDFGPILDKILKFL-------PRE------------------ 308
Query: 393 TMTETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
R+TF+FSAT++ SL++ L + S+ K VS
Sbjct: 309 --------RRTFLFSATMSSKVESLQRASLRDPLKVSVSSSQEKTVS------------- 347
Query: 445 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
TL ++ + H KD YL Y + G+T
Sbjct: 348 ------------------TLIQNPLFIPHKHKDVYLIYLANEFAGKT------------- 376
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
I T+T+ E+ +R++ LL
Sbjct: 377 --------TIVFTRTVNEA----------------------------------QRVSILL 394
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L +PLH ++Q RL L++F+ ++ IL+ATDVAARGLDIP ++ VI++ +P+
Sbjct: 395 RTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVINFDMPQD 454
Query: 625 SEIYIHRSGRTARANNEGLTVVLI 648
S YIHR GRTARA G + +I
Sbjct: 455 SMTYIHRVGRTARAGRSGRAISII 478
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G ++ A VVGG+ Q L K PHI+VATPG L
Sbjct: 205 GLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPHIVVATPGRL 263
>gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88]
gi|143462251|sp|A2RB17.1|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3
gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger]
Length = 467
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 146/447 (32%), Positives = 215/447 (48%), Gaps = 87/447 (19%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ I E + A G+K PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 52 ELGIIEQLCEACETMGYKAPTPIQRESIPLALKGR-DLIGLAETGSGKTAAFALPILQAL 110
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+E P + L+LAPTRELA Q
Sbjct: 111 ---MEKP------------------------------------QPFFGLVLAPTRELAYQ 131
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
+ G V+ +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 132 ISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLDHLE--NTKGFSL 189
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SL 1003
+ YLV+DE DR+++ P L IL + + R+TF+FSAT++ SL
Sbjct: 190 RNLKYLVMDEADRLLDMDFGPLLDKILKVL-----PRERRTFLFSATMSSKVESLQRASL 244
Query: 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 1063
N L + SK + VS TL +S +
Sbjct: 245 SNPLRVSVSTSKYQTVS-------------------------------TLLQSYLFIPQK 273
Query: 1064 EKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 1122
KD YL Y + + G+ T++F +++ +RL LL L +PLH ++Q RL L +
Sbjct: 274 HKDLYLVYLLNEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGK 333
Query: 1123 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIE 1182
FR ++ +IL+ATDVAARGLDIP ++ V+++ +P S Y+HR GRTARA GL + +
Sbjct: 334 FRARSRNILVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVA 393
Query: 1183 SDEIPLYIKMFNSLEKKVDLPDFPIDE 1209
++ +++++ +L KK+ D P DE
Sbjct: 394 QYDVEVWLRIEGALGKKLKEYDCPKDE 420
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 143/507 (28%), Positives = 204/507 (40%), Gaps = 169/507 (33%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ I E + A G+K PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 52 ELGIIEQLCEACETMGYKAPTPIQRESIPLALKGR-DLIGLAETGSGKTAAFALPILQAL 110
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+E P + L+LAPTRELA Q
Sbjct: 111 ---MEKP------------------------------------QPFFGLVLAPTRELAYQ 131
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
+ G V+ +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 132 ISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLDHLE--NTKGFSL 189
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+ YLV+DE DR+++ P L IL + PR+
Sbjct: 190 RNLKYLVMDEADRLLDMDFGPLLDKILKVL-------PRE-------------------- 222
Query: 395 TETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 446
R+TF+FSAT++ SL N L + SK + VS
Sbjct: 223 ------RRTFLFSATMSSKVESLQRASLSNPLRVSVSTSKYQTVS--------------- 261
Query: 447 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPK 506
TL +S + KD YL Y + + G++
Sbjct: 262 ----------------TLLQSYLFIPQKHKDLYLVYLLNEFAGQS--------------- 290
Query: 507 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 566
I T+T+ E+ +RL LL
Sbjct: 291 ------TIIFTRTVNET----------------------------------QRLAFLLRA 310
Query: 567 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626
L +PLH ++Q RL L +FR ++ +IL+ATDVAARGLDIP ++ V+++ +P S
Sbjct: 311 LGFGAIPLHGQLSQSARLGALGKFRARSRNILVATDVAARGLDIPSVDVVLNFDLPGDSP 370
Query: 627 IYIHRSGRTARANNEGLTVVLIESDEI 653
Y+HR GRTARA GL + + ++
Sbjct: 371 SYVHRVGRTARAGKSGLAISFVAQYDV 397
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 34/61 (55%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ L+LAPTRELA Q+ G V+ +VGGM Q L K PHI+VATPG
Sbjct: 117 FFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGR 176
Query: 1414 L 1414
L
Sbjct: 177 L 177
>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Macaca mulatta]
Length = 455
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 240/473 (50%), Gaps = 81/473 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKI +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKILIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 209
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + I KD+YL Y
Sbjct: 210 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
++ + + KK LP FP + + ++ +R+ A+ +E K K++R D
Sbjct: 377 RIEHLIGKK--LPVFPTQDDEVMMLAERVAEAQRFARMELREHGEKKKRSRED 427
Score = 177 bits (448), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 214/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKI +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKILIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 87 --LETP------------------------------------QRLFALVLTPTRELAFQI 108
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 109 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 168
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 169 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 198
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 199 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 228
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + I KD+YL Y + + G
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG------------------------- 263
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 264 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 293
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 353
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 354 TARAGRSGKAITFVTQYDVEL 374
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 154 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 205 SATMTKKVQKLQ 216
Score = 40.4 bits (93), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ L+ ++ + + KK LP FP + + ++ +R+
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFPTQDDEVMMLAERV 403
Query: 1299 DLAKSIEYLE-----SKIKKNRPD 1317
A+ +E K K++R D
Sbjct: 404 AEAQRFARMELREHGEKKKRSRED 427
>gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
Length = 463
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/479 (31%), Positives = 244/479 (50%), Gaps = 82/479 (17%)
Query: 755 VDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 814
V+ N++ F Q+ + + + A + +K PTK+Q +P A ++DI+G AE
Sbjct: 17 VEEQNDDITFQQLG------VTDVLCEACDRLNWKKPTKVQIAALPHAF-KKRDIIGLAE 69
Query: 815 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTR 874
TGSGKT AF IPIL + LE P
Sbjct: 70 TGSGKTAAFAIPILQAL---LETP------------------------------------ 90
Query: 875 NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 934
KL+AL+L PTRELA Q+ G + +A +VGG+ T Q L K PH++VATP
Sbjct: 91 QKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAKRPHVIVATP 150
Query: 935 GRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
GRL + ++ F+L L YLV+DE DR++ E++ IL + + R+T+
Sbjct: 151 GRLVDHLENTKGFNLRAL---KYLVMDEADRILNMDFEVEVEKILKVI-----PKERRTY 202
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 1053
++SAT+T KKV+K + + ++ P ++++ K L
Sbjct: 203 LYSATMT----------------KKVAKLERA--------SLNDPVRIEVSSKYQTVDKL 238
Query: 1054 TESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
+ I + K++YL Y + + G+T +VFC++ S R +L L +PLH M+
Sbjct: 239 KQYYIFIPYKYKEAYLVYILNEMAGQTAIVFCSTCVSALRTALMLRKLGFGAVPLHGQMS 298
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q +RL +L++F+ + ++ L+ TDVA+RGLDIP ++ V++Y VP S+ Y+HR GRTARA
Sbjct: 299 QAKRLGSLNKFKSKTSTTLICTDVASRGLDIPHVDLVLNYDVPTQSKDYVHRVGRTARAG 358
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
G+ + + ++ +Y ++ + KK LP F E+ + L+ +R++ A+ + E K
Sbjct: 359 RSGVAVTFVTQYDVEIYQRIERLIGKK--LPLFETVENDVMLLMERVEEAQKLAKREMK 415
Score = 174 bits (440), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 137/512 (26%), Positives = 219/512 (42%), Gaps = 162/512 (31%)
Query: 138 VDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 197
V+ N++ F Q+ + + + A + +K PTK+Q +P A ++DI+G AE
Sbjct: 17 VEEQNDDITFQQLG------VTDVLCEACDRLNWKKPTKVQIAALPHAF-KKRDIIGLAE 69
Query: 198 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTR 257
TGSGKT AF IPIL + LE P
Sbjct: 70 TGSGKTAAFAIPILQAL---LETP------------------------------------ 90
Query: 258 NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 317
KL+AL+L PTRELA Q+ G + +A +VGG+ T Q L K PH++VATP
Sbjct: 91 QKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAKRPHVIVATP 150
Query: 318 GRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
GRL + ++ F+L L YLV+DE DR++ E++ IL + P++
Sbjct: 151 GRLVDHLENTKGFNLRAL---KYLVMDEADRILNMDFEVEVEKILKVI-------PKE-- 198
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436
R+T+++SAT+T KKV+K + +
Sbjct: 199 ------------------------RRTYLYSATMT----------------KKVAKLERA 218
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
++ P ++++ K L + I + K++YL Y + + G+T
Sbjct: 219 --------SLNDPVRIEVSSKYQTVDKLKQYYIFIPYKYKEAYLVYILNEMAGQT----- 265
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556
+ + C ++ S
Sbjct: 266 --------------------------AIVFC------------------------STCVS 275
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616
R +L L +PLH M+Q +RL +L++F+ + ++ L+ TDVA+RGLDIP ++ V
Sbjct: 276 ALRTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKTSTTLICTDVASRGLDIPHVDLV 335
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
++Y VP S+ Y+HR GRTARA G+ V +
Sbjct: 336 LNYDVPTQSKDYVHRVGRTARAGRSGVAVTFV 367
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G + +A +VGG+ T Q L K PH++VATPG L
Sbjct: 95 ALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAKRPHVIVATPGRL 153
>gi|440486596|gb|ELQ66446.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae P131]
Length = 538
Score = 220 bits (561), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 226/463 (48%), Gaps = 93/463 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I E + A FK PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 115 LGIVEPLCEACEALKFKKPTPIQEQAIPLALQGR-DVIGIAETGSGKTAAFALPILQSL- 172
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P L+ L+LAPTRELA Q+
Sbjct: 173 --LEKP------------------------------------QPLFGLVLAPTRELAAQI 194
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A VVGG+ Q L K PHI+VATPGRL L H T+
Sbjct: 195 GQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPHIVVATPGRL-----LDHLEKTKGF 249
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH-------- 1001
L + +LV+DE DR+++ P ILD++ + + R+TF+FSAT++
Sbjct: 250 SLRSLKFLVMDEADRLLDLDFGP----ILDKI-LKFLPRERRTFLFSATMSSKVESLQRA 304
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
SL++ L + S+ K VS TL ++ +
Sbjct: 305 SLRDPLKVSVSSSQEKTVS-------------------------------TLIQNPLFIP 333
Query: 1062 HDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
H KD YL Y + G+T +VF +++ +R++ LL L +PLH ++Q RL L
Sbjct: 334 HKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGAL 393
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
++F+ ++ IL+ATDVAARGLDIP ++ VI++ +P+ S YIHR GRTARA G + +
Sbjct: 394 NKFKARSRDILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISI 453
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
I ++ L++++ + LP F D+ + + K+R++ A+
Sbjct: 454 ITQYDLELWLRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQ 496
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 147/504 (29%), Positives = 205/504 (40%), Gaps = 175/504 (34%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I E + A FK PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 115 LGIVEPLCEACEALKFKKPTPIQEQAIPLALQGR-DVIGIAETGSGKTAAFALPILQSL- 172
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P L+ L+LAPTRELA Q+
Sbjct: 173 --LEKP------------------------------------QPLFGLVLAPTRELAAQI 194
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A VVGG+ Q L K PHI+VATPGRL L H T+
Sbjct: 195 GQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPHIVVATPGRL-----LDHLEKTKGF 249
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + +LV+DE DR+++ P L IL + PR+
Sbjct: 250 SLRSLKFLVMDEADRLLDLDFGPILDKILKFL-------PRE------------------ 284
Query: 393 TMTETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
R+TF+FSAT++ SL++ L + S+ K VS
Sbjct: 285 --------RRTFLFSATMSSKVESLQRASLRDPLKVSVSSSQEKTVS------------- 323
Query: 445 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
TL ++ + H KD YL Y + G+T
Sbjct: 324 ------------------TLIQNPLFIPHKHKDVYLIYLANEFAGKT------------- 352
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
I T+T+ E+ +R++ LL
Sbjct: 353 --------TIVFTRTVNEA----------------------------------QRVSILL 370
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L +PLH ++Q RL L++F+ ++ IL+ATDVAARGLDIP ++ VI++ +P+
Sbjct: 371 RTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVINFDMPQD 430
Query: 625 SEIYIHRSGRTARANNEGLTVVLI 648
S YIHR GRTARA G + +I
Sbjct: 431 SMTYIHRVGRTARAGRSGRAISII 454
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G ++ A VVGG+ Q L K PHI+VATPG L
Sbjct: 181 GLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPHIVVATPGRL 239
>gi|325191409|emb|CCA26186.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 463
Score = 220 bits (561), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 151/476 (31%), Positives = 239/476 (50%), Gaps = 74/476 (15%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
+ +N D F + + + T+ A+ G+ P+KIQ +P L R D++G AETG
Sbjct: 18 SGDNCDGFSGDQTFEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGR-DLIGLAETG 76
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
SGKT AF IPIL ++ ++ +
Sbjct: 77 SGKTGAFVIPILQSLL---------------------------------------RSPQR 97
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
LYAL+LAPTRELA Q+ G +K ACVVGG+ Q L + PHI++ATPGR
Sbjct: 98 LYALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARKPHIIIATPGR 157
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + L I +LV+DE DRM+ S F E N + ++ +E R T++FS
Sbjct: 158 LVDHLE--NTKGFSLRTIKFLVLDEADRML-SMDFEEEINQIVQLMPSE----RNTYLFS 210
Query: 997 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
AT+T SK K+ + LLN P +++T K + L +
Sbjct: 211 ATMT-------------SKVAKLQRAS--------LLN---PIKIEITHKFATPENLRQH 246
Query: 1057 KILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
+ KD YL Y + + G++ L+F ++ + +++T +L L + LH M+Q
Sbjct: 247 YLFIPAKFKDCYLSYILNEVAGQSILIFASTCNGTQKVTLMLRNLGFQAICLHGQMSQPN 306
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
RL L++F+ + IL+ TDVA+RGLDIP ++ V++Y +P + YIHR GRTARA G
Sbjct: 307 RLGALNKFKAKTRKILVCTDVASRGLDIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAG 366
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ + + ++ LY ++ L KK+D +P DE + ++++R+ A+ I E K
Sbjct: 367 IAVSFVTQYDVELYQRIEFLLGKKLDA--YPCDEQTVLIMQERVGEAQRIATNEMK 420
Score = 162 bits (409), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 141/516 (27%), Positives = 211/516 (40%), Gaps = 154/516 (29%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
+ +N D F + + + T+ A+ G+ P+KIQ +P L R D++G AETG
Sbjct: 18 SGDNCDGFSGDQTFEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGR-DLIGLAETG 76
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKT AF IPIL ++ ++ +
Sbjct: 77 SGKTGAFVIPILQSLL---------------------------------------RSPQR 97
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
LYAL+LAPTRELA Q+ G +K ACVVGG+ Q L + PHI++ATPGR
Sbjct: 98 LYALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARKPHIIIATPGR 157
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ + L I +LV+DE DRM+ S F E E +Q Q M
Sbjct: 158 LVDHLE--NTKGFSLRTIKFLVLDEADRML-SMDFEE-----------EINQIVQLM--- 200
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 439
R T++FSAT+T SK K+ +
Sbjct: 201 ------------------PSERNTYLFSATMT-------------SKVAKLQRA------ 223
Query: 440 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499
LLN P +++T K + L + + KD YL Y + + G Q +
Sbjct: 224 --SLLN---PIKIEITHKFATPENLRQHYLFIPAKFKDCYLSYILNEVAG-------QSI 271
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKR 559
L S + T+K+ + + +C H +
Sbjct: 272 LIFAS--TCNGTQKVTLMLRNLGFQAICLHGQ---------------------------- 301
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
M+Q RL L++F+ + IL+ TDVA+RGLDIP ++ V++Y
Sbjct: 302 ------------------MSQPNRLGALNKFKAKTRKILVCTDVASRGLDIPSVDVVMNY 343
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+P + YIHR GRTARA G+ V + ++ L
Sbjct: 344 DIPTHGKDYIHRVGRTARAGRAGIAVSFVTQYDVEL 379
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 19/134 (14%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+LAPTRELA Q+ G +K ACVVGG+ Q L + PHI++ATPG L
Sbjct: 100 ALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARKPHIIIATPGRLV 159
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANSRENA 1468
+ K L ++I++L L++A + + + ++E ++Q + R
Sbjct: 160 DHLENTKGFSL-RTIKFL-----------VLDEADRMLSMDFEEEINQIVQLMPSERNTY 207
Query: 1469 LMSKALVSKRKELQ 1482
L S + SK +LQ
Sbjct: 208 LFSATMTSKVAKLQ 221
Score = 45.4 bits (106), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G+ + + ++ LY ++ L KK+D +P DE + ++++R+
Sbjct: 351 DYIHRVGRTARAGRAGIAVSFVTQYDVELYQRIEFLLGKKLDA--YPCDEQTVLIMQERV 408
Query: 1299 DLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDEN 1335
A+ +I N K K D DD+N
Sbjct: 409 GEAQ-------RIATNEMKELASKRGKRHDRESDDDN 438
>gi|384487072|gb|EIE79252.1| hypothetical protein RO3G_03957 [Rhizopus delemar RA 99-880]
Length = 462
Score = 220 bits (561), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 237/467 (50%), Gaps = 79/467 (16%)
Query: 768 AEWVKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
AE +KF+ + + + A + FK PT+IQ +P A+ R DI+G A+TGSGKT AF
Sbjct: 20 AEDLKFSDLGVSKELCEACEKMNFKHPTEIQKESIPWAIEGR-DIIGLAQTGSGKTAAFA 78
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPI+ + +NP +A +LAP
Sbjct: 79 IPIIQRL---WQNP------------------------------------QAFFACVLAP 99
Query: 885 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-L 943
TRELA Q+ G V+ A +VGGM Q L K PHI+V TPGRL + ++
Sbjct: 100 TRELAYQIAETFESLGSVIGVRCAVIVGGMDMMTQSIALAKRPHIIVCTPGRLQDHLENT 159
Query: 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003
F+L L YLV+DE DR+++ P++ IL + + R TF+FSAT+T
Sbjct: 160 KGFNLKHL---KYLVMDEADRLLDLDFGPKIDQILKVI-----PRERNTFLFSATMT--- 208
Query: 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 1063
+K K+ + ++ P V++ K KTL + +
Sbjct: 209 ----------TKVAKLQRA-----------SLHKPVKVEVATKYSTVKTLLQYYLFFPLK 247
Query: 1064 EKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 1122
KD Y+ Y + + G T++F + S +++ +L L +PLH + Q +RL L++
Sbjct: 248 HKDCYMVYLLNELAGNSTIIFTRTCSDTQKIAIMLRNLGFGAIPLHGQLPQAKRLGALNK 307
Query: 1123 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIE 1182
F+ +IL+ATDVA+RGLDIP ++ VI+Y VP++S+ YIHR GRTARA G ++ +
Sbjct: 308 FKAGARNILVATDVASRGLDIPLVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSVTFVT 367
Query: 1183 SDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++ L ++ LE+K+D FP+++ + ++++R+D A+ I LE
Sbjct: 368 QYDVELIQRIEKDLERKLD--AFPVEKDEVMMLQERVDEAQRIATLE 412
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 153/562 (27%), Positives = 237/562 (42%), Gaps = 171/562 (30%)
Query: 151 AEWVKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
AE +KF+ + + + A + FK PT+IQ +P A+ R DI+G A+TGSGKT AF
Sbjct: 20 AEDLKFSDLGVSKELCEACEKMNFKHPTEIQKESIPWAIEGR-DIIGLAQTGSGKTAAFA 78
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IPI+ + +NP +A +LAP
Sbjct: 79 IPIIQRL---WQNP------------------------------------QAFFACVLAP 99
Query: 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-L 326
TRELA Q+ G V+ A +VGGM Q L K PHI+V TPGRL + ++
Sbjct: 100 TRELAYQIAETFESLGSVIGVRCAVIVGGMDMMTQSIALAKRPHIIVCTPGRLQDHLENT 159
Query: 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386
F+L L YLV+DE DR+++ P++ IL + PR+
Sbjct: 160 KGFNLKHL---KYLVMDEADRLLDLDFGPKIDQILKVI-------PRE------------ 197
Query: 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 446
R TF+FSAT+T +K K+ + ++
Sbjct: 198 --------------RNTFLFSATMT-------------TKVAKLQRA-----------SL 219
Query: 447 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPK 506
P V++ K KTL + + KD Y+ Y + + G +
Sbjct: 220 HKPVKVEVATKYSTVKTLLQYYLFFPLKHKDCYMVYLLNELAGNS--------------- 264
Query: 507 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 566
I T+T +++ +++ +L
Sbjct: 265 ------TIIFTRTCSDT----------------------------------QKIAIMLRN 284
Query: 567 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626
L +PLH + Q +RL L++F+ +IL+ATDVA+RGLDIP ++ VI+Y VP++S+
Sbjct: 285 LGFGAIPLHGQLPQAKRLGALNKFKAGARNILVATDVASRGLDIPLVDVVINYDVPQSSK 344
Query: 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEERA-E 674
YIHR GRTARA G +V + ++ L + F ++++E +ER E
Sbjct: 345 DYIHRVGRTARAGRSGKSVTFVTQYDVELIQRIEKDLERKLDAFPVEKDEVMMLQERVDE 404
Query: 675 ADKEKTEDINVTVSSKKKKLKR 696
A + T ++ T + KK K R
Sbjct: 405 AQRIATLELRETANGKKSKRGR 426
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ A +LAPTRELA Q+ G V+ A +VGGM Q L K PHI+V TPG
Sbjct: 91 AFFACVLAPTRELAYQIAETFESLGSVIGVRCAVIVGGMDMMTQSIALAKRPHIIVCTPG 150
Query: 1413 AL 1414
L
Sbjct: 151 RL 152
Score = 47.0 bits (110), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L ++ LE+K+D FP+++ + ++++R+
Sbjct: 345 DYIHRVGRTARAGRSGKSVTFVTQYDVELIQRIEKDLERKLD--AFPVEKDEVMMLQERV 402
Query: 1299 DLAKSIEYLE 1308
D A+ I LE
Sbjct: 403 DEAQRIATLE 412
>gi|357500171|ref|XP_003620374.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355495389|gb|AES76592.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 431
Score = 220 bits (561), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 156/474 (32%), Positives = 238/474 (50%), Gaps = 75/474 (15%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + +PE+++ A + G+K P KIQ +P AL KD++G AETGSGKT AF +P
Sbjct: 1 MKSFKDLGLPESLVEACEKMGWKNPLKIQIEAIPPALEG-KDLIGLAETGSGKTGAFALP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL + LE P N +A +++PTR
Sbjct: 60 ILHAL---LEAPRP----------------------------------NHFFACVMSPTR 82
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELAIQ+ G VK A +VGG+ +Q + K PHI+V TPGR+ + L +
Sbjct: 83 ELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVLD--HLKNT 140
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
L ++ YLV+DE DR++ L IL + + R+TF+FSAT+T
Sbjct: 141 KGFSLARLKYLVLDEADRLLNEDFEESLNEILGMI-----PRERRTFLFSATMT------ 189
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
KKV K LQ + +++P ++ + K TL + KD
Sbjct: 190 ----------KKVEK-------LQRVC-LRNPVKIETSSKYSTVDTLKQQYRFLPAKHKD 231
Query: 1067 SYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
YL Y + + G T +VF + S + L +L L +P++ M+Q +RL L++F+
Sbjct: 232 CYLVYILTEMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKS 291
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+ +ILL TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+ E
Sbjct: 292 GDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYE 351
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL---ESKIKKNR 1236
+ Y+++ + KK LP++P +E + L+++R+ AK + ES KK R
Sbjct: 352 LEWYVQIEKLIGKK--LPEYPANEEEVLLLEERVGEAKRLAATKMKESGGKKRR 403
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 143/504 (28%), Positives = 213/504 (42%), Gaps = 152/504 (30%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + +PE+++ A + G+K P KIQ +P AL KD++G AETGSGKT AF +P
Sbjct: 1 MKSFKDLGLPESLVEACEKMGWKNPLKIQIEAIPPALEG-KDLIGLAETGSGKTGAFALP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL + LE P N +A +++PTR
Sbjct: 60 ILHAL---LEAPRP----------------------------------NHFFACVMSPTR 82
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELAIQ+ G VK A +VGG+ +Q + K PHI+V TPGR+ + L +
Sbjct: 83 ELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVLD--HLKNT 140
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
L ++ YLV+DE DR++ L IL + PR+
Sbjct: 141 KGFSLARLKYLVLDEADRLLNEDFEESLNEILGMI-------PRE--------------- 178
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
R+TF+FSAT+T KKV K LQ + +++P
Sbjct: 179 -----------RRTFLFSATMT----------------KKVEK-------LQRVC-LRNP 203
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
++ + K TL + KD YL Y + + G T
Sbjct: 204 VKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGST------------------ 245
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
+ T+T C+S + L +L L
Sbjct: 246 ---SMVFTRT-------------------------------CDS---TRLLALILRNLGL 268
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+P++ M+Q +RL L++F+ + +ILL TDVA+RGLDIP ++ VI+Y +P S+ YI
Sbjct: 269 KAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYI 328
Query: 630 HRSGRTARANNEGLTVVLIESDEI 653
HR GRTARA G+ + L+ E+
Sbjct: 329 HRVGRTARAGRSGVAISLVNQYEL 352
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
A +++PTRELAIQ+ G VK A +VGG+ +Q + K PHI+V TPG
Sbjct: 75 ACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPG 131
Score = 41.6 bits (96), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G+ + L+ E+ Y+++ + KK LP++P +E + L+++R+
Sbjct: 326 DYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLIGKK--LPEYPANEEEVLLLEERV 383
Query: 1299 DLAKSIEYL---ESKIKKNR 1315
AK + ES KK R
Sbjct: 384 GEAKRLAATKMKESGGKKRR 403
>gi|357505249|ref|XP_003622913.1| ATP-dependent RNA helicase dbp9 [Medicago truncatula]
gi|355497928|gb|AES79131.1| ATP-dependent RNA helicase dbp9 [Medicago truncatula]
Length = 1155
Score = 220 bits (561), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 151/475 (31%), Positives = 240/475 (50%), Gaps = 75/475 (15%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
+M + +PE+++ A + G+KTP +IQ +P AL KD++G A+TGSGKT AF +
Sbjct: 724 EMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEG-KDLIGLAKTGSGKTGAFAL 782
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
PIL + LE P N +A +++PT
Sbjct: 783 PILHAL---LEAPRP----------------------------------NHFFACVMSPT 805
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
RELAIQ+ G VK A +VGG+ +Q + K PHI+V TPGR+ + L +
Sbjct: 806 RELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVLD--HLKN 863
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
L ++ YLV+DE DR++ L IL + + R+TF+FSAT+T+
Sbjct: 864 TKGFSLARLKYLVLDEADRLLNEDFEESLNEILGMI-----PRERRTFLFSATMTNK--- 915
Query: 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 1065
+++LQ + +++P ++ + K TL + K
Sbjct: 916 --------------------VEKLQRVC-LRNPVKIETSSKYSTVDTLKQQYRFLPAKHK 954
Query: 1066 DSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
D YL Y + + G T +VF + S + L +L L +P++ M+Q +RL L++F+
Sbjct: 955 DCYLVYILSEMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFK 1014
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+ +ILL TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+
Sbjct: 1015 SGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQY 1074
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL---ESKIKKNR 1236
E+ Y+++ + KK LP++P +E + L+++R+ AK + ES KK R
Sbjct: 1075 ELEWYVQIEKLIGKK--LPEYPANEEEVLLLEERVGEAKRLAATKMKESGGKKRR 1127
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 139/505 (27%), Positives = 218/505 (43%), Gaps = 152/505 (30%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
+M + +PE+++ A + G+KTP +IQ +P AL KD++G A+TGSGKT AF +
Sbjct: 724 EMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEG-KDLIGLAKTGSGKTGAFAL 782
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
PIL + LE P N +A +++PT
Sbjct: 783 PILHAL---LEAPRP----------------------------------NHFFACVMSPT 805
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
RELAIQ+ G VK A +VGG+ +Q + K PHI+V TPGR+ + L +
Sbjct: 806 RELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVLD--HLKN 863
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
L ++ YLV+DE DR++ L IL + PR+
Sbjct: 864 TKGFSLARLKYLVLDEADRLLNEDFEESLNEILGMI-------PRE-------------- 902
Query: 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 448
R+TF+FSAT+T+ +++LQ + +++
Sbjct: 903 ------------RRTFLFSATMTN-----------------------KVEKLQRVC-LRN 926
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508
P ++ + K TL + KD YL Y + + G T
Sbjct: 927 PVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYILSEMAGST----------------- 969
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 568
+ T+T +++L IL++ G LK
Sbjct: 970 ----SMVFTRTCDSTRLLA-----------LILRNLG---------------------LK 993
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
+P++ M+Q +RL L++F+ + +ILL TDVA+RGLDIP ++ VI+Y +P S+ Y
Sbjct: 994 A--IPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDY 1051
Query: 629 IHRSGRTARANNEGLTVVLIESDEI 653
IHR GRTARA G+ + L+ E+
Sbjct: 1052 IHRVGRTARAGRSGVAISLVNQYEL 1076
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
A +++PTRELAIQ+ G VK A +VGG+ +Q + K PHI+V TPG
Sbjct: 799 ACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPG 855
Score = 41.2 bits (95), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G+ + L+ E+ Y+++ + KK LP++P +E + L+++R+
Sbjct: 1050 DYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLIGKK--LPEYPANEEEVLLLEERV 1107
Query: 1299 DLAKSIEYL---ESKIKKNR 1315
AK + ES KK R
Sbjct: 1108 GEAKRLAATKMKESGGKKRR 1127
>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 496
Score = 220 bits (560), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 146/444 (32%), Positives = 227/444 (51%), Gaps = 74/444 (16%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 114 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 169
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF IPIL N+L + E
Sbjct: 170 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 190
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 191 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 250
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RL + ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T++F
Sbjct: 251 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLF 304
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T SK K+ + ++ +P ++ K TL +
Sbjct: 305 SATMT-------------SKIDKLQRA-----------SLTNPVKCAVSNKYQTVDTLVQ 340
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ ++ K++YL Y + + G+T++ F + ++ +RL+ L +L+ S LH +NQ
Sbjct: 341 TLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQN 400
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR+ LD F+ SIL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA
Sbjct: 401 QRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS 460
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEK 1198
G ++ L+ ++ L +++ L K
Sbjct: 461 GKSISLVSQYDLELILRIEEVLGK 484
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 221/517 (42%), Gaps = 156/517 (30%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
+ +N ++ F +E N+ +I+A + PT IQS +P AL DI+G A+T
Sbjct: 114 ENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQT 169
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF IPIL N+L + E
Sbjct: 170 GSGKTAAFAIPIL----NRLWHDQE----------------------------------- 190
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 191 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 250
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RL + ++ + L K+ +LV+DE DR+++ P
Sbjct: 251 RLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----------------------- 285
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 438
+LDR+ +Q R T++FSAT+T SK K+ +
Sbjct: 286 ---------VLDRILKIIPTQERTTYLFSATMT-------------SKIDKLQRA----- 318
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQD 498
++ +P ++ K TL ++ ++ K++YL Y + + G+T+
Sbjct: 319 ------SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTM------ 366
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 558
I T+T ++ L CN
Sbjct: 367 ---------------IIFTRTKANAERLSG---------------------LCN------ 384
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
+L+ S LH +NQ QR+ LD F+ SIL+ATDVAARGLDIP ++ V++
Sbjct: 385 -------LLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVN 437
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 438 YDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 474
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 192 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGR 251
Query: 1414 L 1414
L
Sbjct: 252 L 252
>gi|158514834|sp|A3LS22.3|RRP3_PICST RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 484
Score = 220 bits (560), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 143/459 (31%), Positives = 233/459 (50%), Gaps = 78/459 (16%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
+K ++EV N D V+ + + + + ++ A+ Q F PT IQS +P AL KD
Sbjct: 56 SKNIVEV----NPDDEVKFSTFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEG-KD 110
Query: 809 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868
I+G A+TGSGKT AF IPIL +
Sbjct: 111 IIGLAQTGSGKTAAFAIPILQSLW------------------------------------ 134
Query: 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928
+ + + L+LAP RELA Q++ G V+ C+VGGM Q R L + PH
Sbjct: 135 ---EAQTPYFGLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPH 191
Query: 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 988
I++ATPGR+ + ++ H L + Y V+DE D++++ P L IL ++
Sbjct: 192 IIIATPGRIMDHLE--HTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQI-----PS 244
Query: 989 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG 1048
R T++FSAT+T+ I++LQ ++ +P V ++ K
Sbjct: 245 KRTTYLFSATMTNK-----------------------IEKLQRA-SLHNPVRVAVSSKYQ 280
Query: 1049 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPL 1107
L +S +L K++YL + + + G++++ F + + +R + L +L S +PL
Sbjct: 281 TADNLIQSMMLVSDGYKNTYLIHLLNEFVGKSIIIFARTRAHTQRTSILCRILGFSAVPL 340
Query: 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
H + Q QRL +L++F+ +IL+ATDVAARGLDIP ++ VI+Y +P S+ Y+HR GR
Sbjct: 341 HGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGR 400
Query: 1168 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206
TARA G ++ L+ ++ +Y+++ S++KK LP P
Sbjct: 401 TARAGRSGKSISLVTQYDLEMYLRIEQSIQKK--LPKDP 437
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 139/517 (26%), Positives = 221/517 (42%), Gaps = 158/517 (30%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
+K ++EV N D V+ + + + + ++ A+ Q F PT IQS +P AL KD
Sbjct: 56 SKNIVEV----NPDDEVKFSTFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEG-KD 110
Query: 192 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251
I+G A+TGSGKT AF IPIL +
Sbjct: 111 IIGLAQTGSGKTAAFAIPILQSLW------------------------------------ 134
Query: 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311
+ + + L+LAP RELA Q++ G V+ C+VGGM Q R L + PH
Sbjct: 135 ---EAQTPYFGLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPH 191
Query: 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 371
I++ATPGR+ + ++ H L + Y V+DE D++++ E +LD++
Sbjct: 192 IIIATPGRIMDHLE--HTKGFSLKMLKYFVMDEADKLLDL----EFGPVLDKI------- 238
Query: 372 PRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 431
LK I + R T++FSAT+T+
Sbjct: 239 -------------LKQIPSK---------RTTYLFSATMTN------------------- 257
Query: 432 KGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
I++LQ ++ +P V ++ K L +S +L K++YL + + + G++
Sbjct: 258 ----KIEKLQR-ASLHNPVRVAVSSKYQTADNLIQSMMLVSDGYKNTYLIHLLNEFVGKS 312
Query: 492 LCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 551
+ ++ H RT + C
Sbjct: 313 II------------------------------------------IFARTRAHTQRTSILC 330
Query: 552 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 611
+L S +PLH + Q QRL +L++F+ +IL+ATDVAARGLDIP
Sbjct: 331 R-------------ILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIP 377
Query: 612 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
++ VI+Y +P S+ Y+HR GRTARA G ++ L+
Sbjct: 378 SVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLV 414
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 1354 WDA------LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 1407
W+A L+LAP RELA Q++ G V+ C+VGGM Q R L + PHI+
Sbjct: 134 WEAQTPYFGLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHII 193
Query: 1408 VATPG 1412
+ATPG
Sbjct: 194 IATPG 198
>gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans]
gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans CBS 6340]
Length = 525
Score = 220 bits (560), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 148/466 (31%), Positives = 235/466 (50%), Gaps = 73/466 (15%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
S E + + N+ +I A + PT IQ+ +P AL KDI+G A+TGS
Sbjct: 95 SEQETEAAHFESFSELNLVPELIEACENLKYSKPTPIQAEAIPPALEG-KDIIGLAQTGS 153
Query: 818 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 877
GKT AF IPIL N+L + +
Sbjct: 154 GKTAAFAIPIL----NQLWHDQQ-----------------------------------PY 174
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
YA +LAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPGRL
Sbjct: 175 YACVLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQARDLMRKPHIIIATPGRL 234
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+ ++ + + K+ +LV+DE DR+++ P +LDR+ +Q R T++FSA
Sbjct: 235 MDHLE--NTKGFSMRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQGRTTYLFSA 288
Query: 998 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 1057
T+T SK K+ + ++ +P ++ K TL ++
Sbjct: 289 TMT-------------SKIDKLQRA-----------SLTNPVKCAVSTKYQTVDTLIQTL 324
Query: 1058 ILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
++ K+++L Y + + G+T +VF + ++ +R+ L +L+ S LH +NQ QR
Sbjct: 325 MVVPGGLKNTFLIYLLNEFLGKTAIVFTRTKANAERIATLCNLLEFSATALHGDLNQNQR 384
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
LD F+ SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G
Sbjct: 385 TGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGK 444
Query: 1177 TLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
++ L+ ++ L +++ + L +K LP +D+ V+ ++ +D A
Sbjct: 445 SISLVSQYDLELILRIEDVLGRK--LPKENVDKGVILSLRDTVDKA 488
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/515 (27%), Positives = 215/515 (41%), Gaps = 153/515 (29%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
S E + + N+ +I A + PT IQ+ +P AL KDI+G A+TGS
Sbjct: 95 SEQETEAAHFESFSELNLVPELIEACENLKYSKPTPIQAEAIPPALEG-KDIIGLAQTGS 153
Query: 201 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 260
GKT AF IPIL N+L + +
Sbjct: 154 GKTAAFAIPIL----NQLWHDQQ-----------------------------------PY 174
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
YA +LAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPGRL
Sbjct: 175 YACVLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQARDLMRKPHIIIATPGRL 234
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
+ ++ + + K+ +LV+DE DR+++ P
Sbjct: 235 MDHLE--NTKGFSMRKLKFLVMDEADRLLDMEFGP------------------------- 267
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
+LDR+ +Q R T++FSAT+T SK K+ +
Sbjct: 268 -------VLDRILKIIPTQGRTTYLFSATMT-------------SKIDKLQRA------- 300
Query: 441 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500
++ +P ++ K TL ++ ++ K+++L Y + + G+T
Sbjct: 301 ----SLTNPVKCAVSTKYQTVDTLIQTLMVVPGGLKNTFLIYLLNEFLGKT--------- 347
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 560
I T+T ++ R CN
Sbjct: 348 ------------AIVFTRTKANAE---------------------RIATLCN-------- 366
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+L+ S LH +NQ QR LD F+ SIL+ATDVAARGLDIP ++ VI+Y
Sbjct: 367 -----LLEFSATALHGDLNQNQRTGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYD 421
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 422 IPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 456
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A +LAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG
Sbjct: 174 YYACVLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQARDLMRKPHIIIATPGR 233
Query: 1414 L 1414
L
Sbjct: 234 L 234
>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis Pb18]
Length = 482
Score = 220 bits (560), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 155/517 (29%), Positives = 247/517 (47%), Gaps = 114/517 (22%)
Query: 690 KKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSAN 749
KK+KL P + ++P+ +K+ E D+ S+ +Q K Q T+
Sbjct: 5 KKRKLAHAARPDSTK--------SNPETSGSKSVEQSQDQLTSEAGEQGAKNPQEETA-- 54
Query: 750 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
T + +D+ + +++ A G+KTPT IQ+ +P AL R D+
Sbjct: 55 -------TKSFKDL----------GVIDSLCEACEALGYKTPTPIQTEAIPLALQGR-DL 96
Query: 810 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869
+G AETGSGKT AF +PIL +++K ++
Sbjct: 97 IGLAETGSGKTAAFALPILQALMDKPQS-------------------------------- 124
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
L+ L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI
Sbjct: 125 -------LFGLVLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPHI 177
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
+VATPGRL + ++ + L + YLV+DE DR+++ P ILD++ + +
Sbjct: 178 IVATPGRLLDHLE--NTKGFSLRNLKYLVMDEADRLLDLDFGP----ILDKI-LKVLPRE 230
Query: 990 RQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 1041
R+T++FSAT++ SL N L + SK + VS
Sbjct: 231 RRTYLFSATMSSKVESLQRASLSNPLRVSISSSKYQTVS--------------------- 269
Query: 1042 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTML 1100
TL ++ + H KD YL Y + + G++ ++F +++ +RL LL L
Sbjct: 270 ----------TLLQTFLFIPHKYKDIYLVYLLNEFAGQSAIIFTRTVNETQRLAILLRAL 319
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
+PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P S+
Sbjct: 320 GFGAIPLHGQLSQSYRLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPPDSKT 379
Query: 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197
YIHR GRTARA G + ++ +++++ N+L+
Sbjct: 380 YIHRVGRTARAGKSGHAFSFVTQYDLEVWLRIENALD 416
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 158/578 (27%), Positives = 237/578 (41%), Gaps = 196/578 (33%)
Query: 73 KKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSAN 132
KK+KL P + ++P+ +K+ E D+ +S+ +Q K Q T+
Sbjct: 5 KKRKLAHAARPDSTK--------SNPETSGSKSVEQSQDQLTSEAGEQGAKNPQEETA-- 54
Query: 133 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
T + +D+ + +++ A G+KTPT IQ+ +P AL R D+
Sbjct: 55 -------TKSFKDL----------GVIDSLCEACEALGYKTPTPIQTEAIPLALQGR-DL 96
Query: 193 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252
+G AETGSGKT AF +PIL +++K ++
Sbjct: 97 IGLAETGSGKTAAFALPILQALMDKPQS-------------------------------- 124
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
L+ L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI
Sbjct: 125 -------LFGLVLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPHI 177
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
+VATPGRL + ++ + L + YLV+DE DR+++ P L IL + P
Sbjct: 178 IVATPGRLLDHLE--NTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVL-------P 228
Query: 373 RQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLKNSLNLKKGQ 424
R+ R+T++FSAT++ SL N L +
Sbjct: 229 RE--------------------------RRTYLFSATMSSKVESLQRASLSNPLRVSISS 262
Query: 425 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484
SK + VS TL ++ + H KD YL Y +
Sbjct: 263 SKYQTVS-------------------------------TLLQTFLFIPHKYKDIYLVYLL 291
Query: 485 LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 544
+ G++ I T+T+ E+
Sbjct: 292 NEFAGQS---------------------AIIFTRTVNET--------------------- 309
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+RL LL L +PLH ++Q RL L +FR ++ IL+ATDVA
Sbjct: 310 -------------QRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSRDILVATDVA 356
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
ARGLDIP ++ V+++ +P S+ YIHR GRTARA G
Sbjct: 357 ARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSG 394
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 35/62 (56%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 124 SLFGLVLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPHIIVATPG 183
Query: 1413 AL 1414
L
Sbjct: 184 RL 185
>gi|433653854|ref|YP_007297562.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292043|gb|AGB17865.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 514
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 154/525 (29%), Positives = 254/525 (48%), Gaps = 95/525 (18%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ E I++A+ GF+ P+KIQS V+P LL D++G AETG+GKTLA+G PI+
Sbjct: 2 DFKELNLNEKILKAIDDMGFEEPSKIQSEVIP-VLLEGSDVIGQAETGTGKTLAYGAPII 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
ND K++ LIL PTREL
Sbjct: 61 NSF----------GSNDG-----------------------------KVFCLILTPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
AIQ+ + + GKY+ V++ V GG+ ++Q++ + + I+V TPGR+ + I+ ++
Sbjct: 82 AIQINDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIVVGTPGRVLDLIKR---NV 138
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+L + YLVIDE D M++ G ++K I++ T++ RQT +FSAT+ +K
Sbjct: 139 LDLKSVKYLVIDEADEMLDMGFIDDIKEIINH-----TNEERQTMMFSATMPDEIK---- 189
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
S +KK K D K + + +K T+ K+ E+ +S
Sbjct: 190 -----SLAKKYMKSDA--------------KFISIVKKTMTVSTVQHFYYEVKNQERFES 230
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ P T++FC + V LT+ + + +H M+Q QR+ L +F++
Sbjct: 231 LCKILDVDEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGI 290
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
L+ATDVAARG+DI + HVI+Y++P+ E Y+HR GRT RAN G+ L+ S E P
Sbjct: 291 LDFLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYP 350
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRT 1247
++ + K+ + P + +L + + + ++IKK N R
Sbjct: 351 ALKRIEKATRCKIKRKELPTVDDILEVKYNK---------MIAEIKKTLEKNDYKRFVPL 401
Query: 1248 ARANNEGLTLV--------------LIESDEIPLYIKMFNSLEKK 1278
A +E LV L +D+ P Y+++F +L +K
Sbjct: 402 AMELDEEYNLVDVAAALMDMYYGKELYYNDDEPKYVRLFINLGRK 446
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 142/504 (28%), Positives = 223/504 (44%), Gaps = 156/504 (30%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ E I++A+ GF+ P+KIQS V+P LL D++G AETG+GKTLA+G PI+
Sbjct: 2 DFKELNLNEKILKAIDDMGFEEPSKIQSEVIP-VLLEGSDVIGQAETGTGKTLAYGAPII 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
ND K++ LIL PTREL
Sbjct: 61 NSF----------GSNDG-----------------------------KVFCLILTPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
AIQ+ + + GKY+ V++ V GG+ ++Q++ + + I+V TPGR+ + I+ ++
Sbjct: 82 AIQINDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIVVGTPGRVLDLIKR---NV 138
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+L + YLVIDE D M++ G ++K I++
Sbjct: 139 LDLKSVKYLVIDEADEMLDMGFIDDIKEIINH---------------------------- 170
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
T++ RQT +FSAT+ +K S +KK K D +
Sbjct: 171 -----TNEERQTMMFSATMPDEIK---------SLAKKYMKSDAKFISI----------- 205
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPGRTLCEEIQDLLNIKSPKIVDL 510
+ KT+T S + + YY + Q +LC KI+D+
Sbjct: 206 --------VKKTMTVSTV--------QHFYYEVKNQERFESLC------------KILDV 237
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
E P T++FC + V LT+ + +
Sbjct: 238 DE-------------------------------PSSTIIFCKTKKEVDELTENMQSRGYN 266
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+H M+Q QR+ L +F++ L+ATDVAARG+DI + HVI+Y++P+ E Y+H
Sbjct: 267 VEGMHGDMSQNQRINTLRKFKEGILDFLVATDVAARGIDIENVTHVINYNLPQDVESYVH 326
Query: 631 RSGRTARANNEGLTVVLIESDEIP 654
R GRT RAN G+ L+ S E P
Sbjct: 327 RIGRTGRANRSGVAYTLVTSREYP 350
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 17/140 (12%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
LIL PTRELAIQ+ + + GKY+ V++ V GG+ ++Q++ + + I+V TPG +
Sbjct: 72 CLILTPTRELAIQINDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIVVGTPGRVL 131
Query: 1415 -SLKR--IDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+KR +DL KS++YL + D L DM I D + +I R+ + S
Sbjct: 132 DLIKRNVLDL-KSVKYLVI----DEADEML-----DMGFIDDIKEIINHTNEERQTMMFS 181
Query: 1472 KALVSKRKELQSLLGKSVQS 1491
+ E++SL K ++S
Sbjct: 182 ATMPD---EIKSLAKKYMKS 198
>gi|405964769|gb|EKC30218.1| Putative ATP-dependent RNA helicase DDX47 [Crassostrea gigas]
Length = 1146
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 168/530 (31%), Positives = 265/530 (50%), Gaps = 95/530 (17%)
Query: 765 VQMAEWVKF-NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823
VQM + + I + + A Q +KTPTKIQ +P AL D++G AETGSGKT AF
Sbjct: 35 VQMGSMLPYQGIVDVLCEACEQLKWKTPTKIQKEAIPVALQG-SDVIGLAETGSGKTGAF 93
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
+PIL +++K + +LYAL+L
Sbjct: 94 ALPILQTLLDKPQ---------------------------------------RLYALVLT 114
Query: 884 PTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ- 942
PTRELA Q+ G +K A +VGG+ Q +L K PHI++ATPGRL + ++
Sbjct: 115 PTRELAFQISEQFEALGASIGIKCAVIVGGIDMMTQSLMLAKKPHIVIATPGRLVDHLEN 174
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002
F+L L YLV+DE DR++ E+ IL + + R T +FSAT+T
Sbjct: 175 TKGFNLRSL---KYLVMDEADRILNMDFEQEVDKILKAI-----PRERNTLLFSATMT-- 224
Query: 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH 1062
KKV+K ++R ++++P V+++ K L + +
Sbjct: 225 --------------KKVAK----LQRA----SLQNPVRVEVSSKYQTVDKLQQYYLFIPV 262
Query: 1063 DEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
KD YL Y + + G + +VFC++ ++ +R+ +L L + +PLH M+Q +RL L+
Sbjct: 263 KFKDVYLVYILNELAGNSFMVFCSTCANTQRVALMLRNLGLTAIPLHGQMSQSKRLGALN 322
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
+F+ +N SIL+ATDVA+RGLDIP ++ V++ +P S+ YIHR GRTARA G+ + +
Sbjct: 323 KFKSKNRSILIATDVASRGLDIPHVDVVLNLDIPTHSKDYIHRVGRTARAGRSGVAITFV 382
Query: 1182 ESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWL 1241
++ LY ++ + + KK LP + +E + + +R+ A+ +K++ N +
Sbjct: 383 SQYDVELYQRIEHLIGKK--LPLYKTEEEEVMQLMERVTEAQRY----AKMEMNESER-- 434
Query: 1242 HRSGRTARANNEGLTLV-----LIESDEIPLYIKMFNSLEKKVDLPDFPI 1286
GR R N+E L SD+ P N L + D+PDF I
Sbjct: 435 ---GRKKRRNDEDDDADDTEESLDVSDDTP----ETNPLLRYHDMPDFNI 477
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 152/560 (27%), Positives = 240/560 (42%), Gaps = 169/560 (30%)
Query: 148 VQMAEWVKF-NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206
VQM + + I + + A Q +KTPTKIQ +P AL D++G AETGSGKT AF
Sbjct: 35 VQMGSMLPYQGIVDVLCEACEQLKWKTPTKIQKEAIPVALQG-SDVIGLAETGSGKTGAF 93
Query: 207 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
+PIL +++K + +LYAL+L
Sbjct: 94 ALPILQTLLDKPQ---------------------------------------RLYALVLT 114
Query: 267 PTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ- 325
PTRELA Q+ G +K A +VGG+ Q +L K PHI++ATPGRL + ++
Sbjct: 115 PTRELAFQISEQFEALGASIGIKCAVIVGGIDMMTQSLMLAKKPHIVIATPGRLVDHLEN 174
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385
F+L L YLV+DE DR++ E+ IL + PR+
Sbjct: 175 TKGFNLRSL---KYLVMDEADRILNMDFEQEVDKILKAI-------PRE----------- 213
Query: 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 445
R T +FSAT+T KKV+K ++R +
Sbjct: 214 ---------------RNTLLFSATMT----------------KKVAK----LQR----AS 234
Query: 446 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSP 505
+++P V+++ K L + + KD YL Y + + G +
Sbjct: 235 LQNPVRVEVSSKYQTVDKLQQYYLFIPVKFKDVYLVYILNELAGNSFM------------ 282
Query: 506 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 565
+ C ++ ++ +R+ +L
Sbjct: 283 -------------------VFC------------------------STCANTQRVALMLR 299
Query: 566 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625
L + +PLH M+Q +RL L++F+ +N SIL+ATDVA+RGLDIP ++ V++ +P S
Sbjct: 300 NLGLTAIPLHGQMSQSKRLGALNKFKSKNRSILIATDVASRGLDIPHVDVVLNLDIPTHS 359
Query: 626 EIYIHRSGRTARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEERA- 673
+ YIHR GRTARA G+ + + ++ L + + +EEE + ER
Sbjct: 360 KDYIHRVGRTARAGRSGVAITFVSQYDVELYQRIEHLIGKKLPLYKTEEEEVMQLMERVT 419
Query: 674 EADKEKTEDINVTVSSKKKK 693
EA + ++N + +KK+
Sbjct: 420 EAQRYAKMEMNESERGRKKR 439
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G +K A +VGG+ Q +L K PHI++ATPG L
Sbjct: 110 ALVLTPTRELAFQISEQFEALGASIGIKCAVIVGGIDMMTQSLMLAKKPHIVIATPGRL 168
>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
Length = 469
Score = 219 bits (559), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 150/457 (32%), Positives = 234/457 (51%), Gaps = 74/457 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + + +A Q +KTP+KIQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 41 WSDLGLVDVLCKACEQLKWKTPSKIQRESIPVALQG-KDIIGLAETGSGKTAAFALPILQ 99
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LENP + +ALIL PTRELA
Sbjct: 100 AL---LENP------------------------------------QRHFALILTPTRELA 120
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ G VK +VGG+ Q +L K PHI++ATPGRL + L +
Sbjct: 121 FQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKKPHIIIATPGRLVD--HLSNTKGF 178
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + +LV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 179 NLRALKFLVMDEADRILNMDFEAEVDKILKVI-----PRERRTFLFSATMT--------- 224
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
KKV+K + LQD P V+++ K + L + + KD YL
Sbjct: 225 -------KKVNKLQRAC--LQD------PVRVEVSTKYQTVEKLLQYYVFIPAKFKDVYL 269
Query: 1070 YYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ + ++ G + +VFC++ ++ R LL L + +PLH M+Q +RL L +F+ +N
Sbjct: 270 VHILNENAGNSFMVFCSTCNNTIRTALLLRNLGFTAVPLHGQMSQNKRLAALTKFKAKNR 329
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G + + ++ L
Sbjct: 330 SILISTDVASRGLDIPHVDIVINFDIPMHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 389
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
Y ++ + + K+ LP + +E + +++R++ ++ I
Sbjct: 390 YQRIEHLIGKQ--LPLYKTEEEEVMGLQERVEESQRI 424
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 150/533 (28%), Positives = 225/533 (42%), Gaps = 165/533 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + + + +A Q +KTP+KIQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 41 WSDLGLVDVLCKACEQLKWKTPSKIQRESIPVALQG-KDIIGLAETGSGKTAAFALPILQ 99
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LENP + +ALIL PTRELA
Sbjct: 100 AL---LENP------------------------------------QRHFALILTPTRELA 120
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ G VK +VGG+ Q +L K PHI++ATPGRL + L +
Sbjct: 121 FQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKKPHIIIATPGRLVD--HLSNTKGF 178
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + +LV+DE DR++ E+ IL + PR+
Sbjct: 179 NLRALKFLVMDEADRILNMDFEAEVDKILKVI-------PRE------------------ 213
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+TF+FSAT+T KKV+K + LQD P V
Sbjct: 214 --------RRTFLFSATMT----------------KKVNKLQRAC--LQD------PVRV 241
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
+++ K + L + + KD YL + + ++ G
Sbjct: 242 EVSTKYQTVEKLLQYYVFIPAKFKDVYLVHILNENAG----------------------- 278
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
+S++ + C++ ++ R LL L + +
Sbjct: 279 --------------------NSFMVF------------CSTCNNTIRTALLLRNLGFTAV 306
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLH M+Q +RL L +F+ +N SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR
Sbjct: 307 PLHGQMSQNKRLAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPMHSKDYIHRV 366
Query: 633 GRTARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEERAE 674
GRTARA G + + ++ L + + +EEE +ER E
Sbjct: 367 GRTARAGRSGKAITFVTQYDVELYQRIEHLIGKQLPLYKTEEEEVMGLQERVE 419
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA Q+ G VK +VGG+ Q +L K PHI++ATPG L
Sbjct: 110 ALILTPTRELAFQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKKPHIIIATPGRL 168
>gi|356504849|ref|XP_003521207.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Glycine max]
Length = 439
Score = 219 bits (559), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 151/460 (32%), Positives = 233/460 (50%), Gaps = 72/460 (15%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E+++ A + G+K P KIQ+ +P AL KD++G A+TGSGKT AF +PIL +
Sbjct: 14 LGLSESLVEACEKLGWKNPLKIQTEAIPLALEG-KDVIGLAQTGSGKTGAFALPILHAL- 71
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +D +A +L+PTRELAIQ+
Sbjct: 72 --LEAPRPKD----------------------------------FFACVLSPTRELAIQI 95
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G VK A +VGG+ +Q + K PHI+V TPGR+ + L H L
Sbjct: 96 AEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVID--HLKHTKGFSLS 153
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
++ YLV+DE DR++ L IL + + R+TF+FSAT+T
Sbjct: 154 RLKYLVLDEADRLLNEDFEESLNEILQMI-----PRERRTFLFSATMT------------ 196
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
KKV K LQ + +++P ++ + K TL + KD YL Y
Sbjct: 197 ----KKVQK-------LQRVC-LRNPVKIEASSKYSTVDTLKQQYRFLPAKHKDCYLVYI 244
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G T +VF + + + L +L L +P++ M+Q +RL L++F+ +IL
Sbjct: 245 LTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNIL 304
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
L TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+ E+ YI+
Sbjct: 305 LCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQ 364
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ + KK LP++P E + L+++R+ AK + ++ K
Sbjct: 365 IEKLIGKK--LPEYPAQEEEVLLLEERVGEAKRLAVMKMK 402
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 141/498 (28%), Positives = 212/498 (42%), Gaps = 152/498 (30%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E+++ A + G+K P KIQ+ +P AL KD++G A+TGSGKT AF +PIL +
Sbjct: 14 LGLSESLVEACEKLGWKNPLKIQTEAIPLALEG-KDVIGLAQTGSGKTGAFALPILHAL- 71
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +D +A +L+PTRELAIQ+
Sbjct: 72 --LEAPRPKD----------------------------------FFACVLSPTRELAIQI 95
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G VK A +VGG+ +Q + K PHI+V TPGR+ + L H L
Sbjct: 96 AEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVID--HLKHTKGFSLS 153
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
++ YLV+DE DR++ L IL + PR+
Sbjct: 154 RLKYLVLDEADRLLNEDFEESLNEILQMI-------PRE--------------------- 185
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+TF+FSAT+T KKV K LQ + +++P ++ +
Sbjct: 186 -----RRTFLFSATMT----------------KKVQK-------LQRVC-LRNPVKIEAS 216
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K TL + KD YL Y + + G T +
Sbjct: 217 SKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGST---------------------SMV 255
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
T+T +++L IL++ G +P++
Sbjct: 256 FTRTCDATRLLA-----------LILRNLG-----------------------LKAIPIN 281
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M+Q +RL L++F+ +ILL TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRT
Sbjct: 282 GHMSQSKRLGALNKFKSGECNILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRT 341
Query: 636 ARANNEGLTVVLIESDEI 653
ARA G+ + L+ E+
Sbjct: 342 ARAGRSGVAISLVNQYEL 359
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
A +L+PTRELAIQ+ G VK A +VGG+ +Q + K PHI+V TPG
Sbjct: 82 ACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPG 138
Score = 43.1 bits (100), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G+ + L+ E+ YI++ + KK LP++P E + L+++R+
Sbjct: 333 DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKK--LPEYPAQEEEVLLLEERV 390
Query: 1299 DLAKSIEYLESK 1310
AK + ++ K
Sbjct: 391 GEAKRLAVMKMK 402
>gi|353241604|emb|CCA73408.1| probable DEAD box protein (putative RNA helicase) [Piriformospora
indica DSM 11827]
Length = 458
Score = 219 bits (559), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 148/458 (32%), Positives = 232/458 (50%), Gaps = 75/458 (16%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
IPE +++ + G+K T IQ+ +PSAL R DI+G A+TGSGKT AF +PIL
Sbjct: 39 IPE-LLQTVEALGYKNATSIQAQAIPSALQDR-DIIGVAKTGSGKTAAFALPILQ---KW 93
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
E+P LYA ILAPTRELA Q+Q
Sbjct: 94 WEDP------------------------------------KPLYACILAPTRELAYQIQK 117
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
G V+ C+VGG+ Q L K PHI+VATPGRL + ++ + L +
Sbjct: 118 QFEALGANLGVRCCCIVGGLDIMAQKVALAKRPHIVVATPGRLQDHLE--NTKGFSLRSL 175
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
YLV+DE DR+++ P + IL + + R+T +FSAT++
Sbjct: 176 KYLVLDEADRLLDMDFGPIIDKILKVI-----PKERRTMLFSATMSTK------------ 218
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
+KRLQ ++ +P V+++ K TL + + H K+ + +
Sbjct: 219 -----------VKRLQRA-SLVNPVKVEVSSKYSTVSTLQQYYVFGPHMRKEVNMITLVR 266
Query: 1075 QHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
G+++ VF N+++ RLT +L L +PLH+ ++Q RL +L++FR +L+A
Sbjct: 267 SLSGKSIIVFTNTVNDTIRLTLMLRALNIGAIPLHSKLSQSTRLGSLNKFRAGGRQVLIA 326
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDIP ++ VI+Y VP+ S+ YIHR GRTARA G + + +I ++++
Sbjct: 327 TDVAARGLDIPQVDVVINYGVPQNSKDYIHRVGRTARAGRAGKAITFVTQYDIEFHLRIE 386
Query: 1194 NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ KK+D ++ I E +++ ++++ A +E K
Sbjct: 387 EVIGKKMD--EWVIPEQEAAMLAEKVEEAGRAAAMEMK 422
Score = 114 bits (285), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 98/166 (59%), Gaps = 5/166 (3%)
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKR 559
++ +P V+++ K TL + + H K+ + + G+++ VF N+++ R
Sbjct: 226 SLVNPVKVEVSSKYSTVSTLQQYYVFGPHMRKEVNMITLVRSLSGKSIIVFTNTVNDTIR 285
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
LT +L L +PLH+ ++Q RL +L++FR +L+ATDVAARGLDIP ++ VI+Y
Sbjct: 286 LTLMLRALNIGAIPLHSKLSQSTRLGSLNKFRAGGRQVLIATDVAARGLDIPQVDVVINY 345
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEE 665
VP+ S+ YIHR GRTARA G + + +I +F+L+ EE
Sbjct: 346 GVPQNSKDYIHRVGRTARAGRAGKAITFVTQYDI----EFHLRIEE 387
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 108/222 (48%), Gaps = 48/222 (21%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
IPE +++ + G+K T IQ+ +PSAL R DI+G A+TGSGKT AF +PIL
Sbjct: 39 IPE-LLQTVEALGYKNATSIQAQAIPSALQDR-DIIGVAKTGSGKTAAFALPILQ---KW 93
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
E+P LYA ILAPTRELA Q+Q
Sbjct: 94 WEDP------------------------------------KPLYACILAPTRELAYQIQK 117
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
G V+ C+VGG+ Q L K PHI+VATPGRL + ++ + L +
Sbjct: 118 QFEALGANLGVRCCCIVGGLDIMAQKVALAKRPHIVVATPGRLQDHLE--NTKGFSLRSL 175
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
YLV+DE DR+++ P + IL + + R+TM+ S
Sbjct: 176 KYLVLDEADRLLDMDFGPIIDKILKVI-----PKERRTMLFS 212
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 67/136 (49%), Gaps = 23/136 (16%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
A ILAPTRELA Q+Q G V+ C+VGG+ Q L K PHI+VATPG L
Sbjct: 102 ACILAPTRELAYQIQKQFEALGANLGVRCCCIVGGLDIMAQKVALAKRPHIVVATPGRLQ 161
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAK--DMDI--IIDDENLIQPKANSRE 1466
+ K L +S++YL L++A + DMD IID + PK R
Sbjct: 162 DHLENTKGFSL-RSLKYLV-----------LDEADRLLDMDFGPIIDKILKVIPK--ERR 207
Query: 1467 NALMSKALVSKRKELQ 1482
L S + +K K LQ
Sbjct: 208 TMLFSATMSTKVKRLQ 223
>gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3]
gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC
18188]
Length = 482
Score = 219 bits (558), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 142/433 (32%), Positives = 217/433 (50%), Gaps = 87/433 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I +++ A G+K+PT IQ+ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 61 LGIIDSLCEACETLGYKSPTPIQAESIPLALQGR-DLIGLAETGSGKTAAFALPILQALM 119
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
K ++ L+ LILAPTRELA Q+
Sbjct: 120 EKPQS---------------------------------------LFGLILAPTRELAYQI 140
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 141 SGAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPHIVVATPGRLLDHLE--NTKGFSLR 198
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLK 1004
+ YLV+DE DR+++ P ILD++ + + R+T++FSAT++ SL
Sbjct: 199 NLKYLVMDEADRLLDLDFGP----ILDKI-LKVLPRERRTYLFSATMSSKVESLQRASLS 253
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
N L + SK + VS TL +S + H
Sbjct: 254 NPLRVSISSSKYQTVS-------------------------------TLLQSYLFIPHKY 282
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD YL Y + ++ G++ +VF +++ +RL LL L +PLH ++Q RL L +F
Sbjct: 283 KDLYLVYLLNEYAGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKF 342
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
R ++ IL+ATDVAARGLDIP ++ V+++ +P S+ YIHR GRTARA G ++
Sbjct: 343 RSRSRDILVATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQ 402
Query: 1184 DEIPLYIKMFNSL 1196
++ +++++ N+L
Sbjct: 403 YDLEVWLRIENAL 415
Score = 182 bits (463), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 144/495 (29%), Positives = 206/495 (41%), Gaps = 169/495 (34%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I +++ A G+K+PT IQ+ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 61 LGIIDSLCEACETLGYKSPTPIQAESIPLALQGR-DLIGLAETGSGKTAAFALPILQALM 119
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
K ++ L+ LILAPTRELA Q+
Sbjct: 120 EKPQS---------------------------------------LFGLILAPTRELAYQI 140
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 141 SGAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPHIVVATPGRLLDHLE--NTKGFSLR 198
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ P L IL + PR+
Sbjct: 199 NLKYLVMDEADRLLDLDFGPILDKILKVL-------PRE--------------------- 230
Query: 396 ETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+T++FSAT++ SL N L + SK + VS
Sbjct: 231 -----RRTYLFSATMSSKVESLQRASLSNPLRVSISSSKYQTVS---------------- 269
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
TL +S + H KD YL Y + ++ G++
Sbjct: 270 ---------------TLLQSYLFIPHKYKDLYLVYLLNEYAGQS---------------- 298
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
I T+T+ E+ +RL LL L
Sbjct: 299 -----AIVFTRTVNET----------------------------------QRLAILLRAL 319
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P S+
Sbjct: 320 GFGAIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPPDSKT 379
Query: 628 YIHRSGRTARANNEG 642
YIHR GRTARA G
Sbjct: 380 YIHRVGRTARAGKSG 394
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 35/62 (56%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S LILAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 124 SLFGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPHIVVATPG 183
Query: 1413 AL 1414
L
Sbjct: 184 RL 185
>gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 490
Score = 219 bits (558), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 227/449 (50%), Gaps = 81/449 (18%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
+K PT IQ +P AL R DI+G AETGSGKT AF +P+L +++K +
Sbjct: 85 YKYPTPIQEKSIPVALQGR-DIIGLAETGSGKTAAFALPVLQALLDKPQ----------- 132
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 907
L+ L+LAPTRELA Q+ G ++
Sbjct: 133 ----------------------------PLFGLVLAPTRELATQIGQAFEALGSLISLRC 164
Query: 908 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDR 964
A +VGG+ Q L K PHI+VATPGRL + H T+ L + YL++DE DR
Sbjct: 165 AVIVGGLDMVPQAIALGKKPHIIVATPGRLVD-----HLEKTKGFSLRTLKYLIMDEADR 219
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP 1024
+++ P + IL + + R+T++FSATL+ ++
Sbjct: 220 LLDMDFGPSIDKILKFI-----PRERRTYLFSATLSSKIE-------------------- 254
Query: 1025 SIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLV 1082
S++R +++ P V ++ K TL + + +KD+YL Y + +H G+ T+V
Sbjct: 255 SLQRA----SLRDPVRVSISSNKYQTVSTLIQHYMFIPFPQKDTYLVYLVNEHTGKSTIV 310
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F ++ +R+ LL L +PLH ++Q RL L++FR IL+ATDVAARGLD
Sbjct: 311 FTRTVWETQRVAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGTRDILVATDVAARGLD 370
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
IP ++ V++Y +P+ S+ YIHR GRTARA G+ + L+ ++ +Y ++ +L KK L
Sbjct: 371 IPKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLVTQYDLEIYARIEAALGKK--L 428
Query: 1203 PDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++P ++ + + RI A+ +E K
Sbjct: 429 TEYPSEKEEVMTFQSRIQEAQRHARIEMK 457
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 136/482 (28%), Positives = 206/482 (42%), Gaps = 161/482 (33%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
+K PT IQ +P AL R DI+G AETGSGKT AF +P+L +++K +
Sbjct: 85 YKYPTPIQEKSIPVALQGR-DIIGLAETGSGKTAAFALPVLQALLDKPQ----------- 132
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 290
L+ L+LAPTRELA Q+ G ++
Sbjct: 133 ----------------------------PLFGLVLAPTRELATQIGQAFEALGSLISLRC 164
Query: 291 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDR 347
A +VGG+ Q L K PHI+VATPGRL + H T+ L + YL++DE DR
Sbjct: 165 AVIVGGLDMVPQAIALGKKPHIIVATPGRLVD-----HLEKTKGFSLRTLKYLIMDEADR 219
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
+++ P + IL + PR+ R+T++FS
Sbjct: 220 LLDMDFGPSIDKILKFI-------PRE--------------------------RRTYLFS 246
Query: 408 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTE 466
ATL+ ++ S++R +++ P V ++ K TL +
Sbjct: 247 ATLSSKIE--------------------SLQR----ASLRDPVRVSISSNKYQTVSTLIQ 282
Query: 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKIL 526
+ +KD+YL Y + +H G++ I T+T+ E+
Sbjct: 283 HYMFIPFPQKDTYLVYLVNEHTGKS---------------------TIVFTRTVWET--- 318
Query: 527 CKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+R+ LL L +PLH ++Q RL
Sbjct: 319 -------------------------------QRVAILLRTLGFGAIPLHGQLSQSSRLGA 347
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
L++FR IL+ATDVAARGLDIP ++ V++Y +P+ S+ YIHR GRTARA G+ +
Sbjct: 348 LNKFRAGTRDILVATDVAARGLDIPKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAIN 407
Query: 647 LI 648
L+
Sbjct: 408 LV 409
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
L+LAPTRELA Q+ G ++ A +VGG+ Q L K PHI+VATPG L
Sbjct: 136 GLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLV 195
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
K L ++++YL + D L DMD + +++ R L
Sbjct: 196 DHLEKTKGFSL-RTLKYL----IMDEADRLL-----DMDFGPSIDKILKFIPRERRTYLF 245
Query: 1471 SKALVSKRKELQ 1482
S L SK + LQ
Sbjct: 246 SATLSSKIESLQ 257
>gi|260943624|ref|XP_002616110.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238849759|gb|EEQ39223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 477
Score = 219 bits (558), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 160/497 (32%), Positives = 252/497 (50%), Gaps = 84/497 (16%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
E EV S+ F E +K IPE ++ A+ F PT IQ+ +P AL KD++
Sbjct: 51 EASEVSVSDGSKRFESFTE-LKL-IPE-LLEAIQSMKFTKPTPIQAEAIPHALEG-KDVI 106
Query: 811 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870
G A TGSGKT AF IPIL + + ++L
Sbjct: 107 GLAVTGSGKTAAFAIPILQSLWH-----------------------DQLP---------- 133
Query: 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
Y L+L+PTRELA Q+++ G ++ C+VGGM Q R L + PH++
Sbjct: 134 ------YYCLVLSPTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMDQARDLMRKPHVI 187
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
VATPGR+ + ++ H L + YLV+DE DR+++ PEL IL RV E R
Sbjct: 188 VATPGRIVDHLE--HTKGFSLKNLKYLVMDEADRLLDLDFGPELDKIL-RVIPRE----R 240
Query: 991 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 1050
T++FSAT+T+ I++LQ ++ +P + ++ K
Sbjct: 241 NTYLFSATMTNK-----------------------IEKLQRA-SLNNPVRIAVSSKYQTA 276
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHA 1109
L +S +L K++YL + + + G++++ F + + +R L +L S +PLH
Sbjct: 277 DNLVQSMMLVSDGYKNTYLVHLLNEFVGKSIIIFTRTCAHSQRTALLARILGFSAVPLHG 336
Query: 1110 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 1169
++Q QRL +L++F+ +IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTA
Sbjct: 337 QLSQSQRLGSLNKFKSGKANILVATDVAARGLDIPAVDVVINYDIPTDSKAYIHRVGRTA 396
Query: 1170 RANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPI-DESVLSLIKKRIDLA------ 1222
RA G ++ L+ ++ +Y+++ L+KK LP P + VL + +D A
Sbjct: 397 RAGRSGKSISLVTQYDLEMYLRIEAVLQKK--LPKDPAPPKDVLDALHVHVDRATAEAIK 454
Query: 1223 KSIEYLESKIKKNRPDN 1239
++ ++ E K KK D+
Sbjct: 455 QTKDFHEKKGKKKSRDD 471
Score = 182 bits (463), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 150/515 (29%), Positives = 227/515 (44%), Gaps = 157/515 (30%)
Query: 134 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
E EV S+ F E +K IPE ++ A+ F PT IQ+ +P AL KD++
Sbjct: 51 EASEVSVSDGSKRFESFTE-LKL-IPE-LLEAIQSMKFTKPTPIQAEAIPHALEG-KDVI 106
Query: 194 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 253
G A TGSGKT AF IPIL + + ++L
Sbjct: 107 GLAVTGSGKTAAFAIPILQSLWH-----------------------DQLP---------- 133
Query: 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
Y L+L+PTRELA Q+++ G ++ C+VGGM Q R L + PH++
Sbjct: 134 ------YYCLVLSPTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMDQARDLMRKPHVI 187
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
VATPGR+ + ++ H L + YLV+DE DR+++ PEL IL RV PR
Sbjct: 188 VATPGRIVDHLE--HTKGFSLKNLKYLVMDEADRLLDLDFGPELDKIL-RVI------PR 238
Query: 374 QTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
+ R T++FSAT+T+
Sbjct: 239 E--------------------------RNTYLFSATMTN--------------------- 251
Query: 434 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
I++LQ ++ +P + ++ K L +S +L K++YL + + + G+++
Sbjct: 252 --KIEKLQR-ASLNNPVRIAVSSKYQTADNLVQSMMLVSDGYKNTYLVHLLNEFVGKSI- 307
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 553
I T+T C H ++ + L R L F
Sbjct: 308 --------------------IIFTRT-------CAHSQRTALL--------ARILGF--- 329
Query: 554 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613
S +PLH ++Q QRL +L++F+ +IL+ATDVAARGLDIP +
Sbjct: 330 ----------------SAVPLHGQLSQSQRLGSLNKFKSGKANILVATDVAARGLDIPAV 373
Query: 614 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+ VI+Y +P S+ YIHR GRTARA G ++ L+
Sbjct: 374 DVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLV 408
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+ L+L+PTRELA Q+++ G ++ C+VGGM Q R L + PH++VATPG
Sbjct: 134 YYCLVLSPTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMDQARDLMRKPHVIVATPG 192
>gi|440638773|gb|ELR08692.1| ATP-dependent rRNA helicase rrp3 [Geomyces destructans 20631-21]
Length = 485
Score = 219 bits (558), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 140/428 (32%), Positives = 219/428 (51%), Gaps = 71/428 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ +++ A G+K+PT IQ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 64 LGVIDSLCEACESLGYKSPTPIQQESIPPALAGR-DLIGLAETGSGKTAAFALPILQALL 122
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K + L+ L+LAPTRELA Q+
Sbjct: 123 DKPQ---------------------------------------PLFGLVLAPTRELAYQI 143
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 144 SKSFEGLGILISVRCAVIVGGMDMVTQSIALGKKPHIIVATPGRLLDHLE--NTKGFSLR 201
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ YLV+DE DR+++ P ILD++ + + R+T++FSAT++
Sbjct: 202 ALKYLVMDEADRLLDLDFGP----ILDKI-LKVLPRERRTYLFSATMS------------ 244
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
SK + + + L+D L ++ T K TL +S + H KD+YL Y
Sbjct: 245 -SKVESLQRAS-----LRDPLRVQIS-----TNKYQTVSTLLQSYLFIPHPHKDTYLIYL 293
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ G++ +VF +++ +RL LL L +PLH ++Q RL L++FR + IL
Sbjct: 294 LNDFAGQSAIVFTRTVNETQRLAILLRTLGFGAIPLHGQLSQSARLGALNKFRAGSREIL 353
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA G + ++ ++ ++++
Sbjct: 354 VATDVAARGLDIPSVDVVLNYDLPPDSKTYIHRVGRTARAGKSGHAISIVTQYDVEIWLR 413
Query: 1192 MFNSLEKK 1199
+ +L K
Sbjct: 414 IEAALGMK 421
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 148/513 (28%), Positives = 220/513 (42%), Gaps = 155/513 (30%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ +++ A G+K+PT IQ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 64 LGVIDSLCEACESLGYKSPTPIQQESIPPALAGR-DLIGLAETGSGKTAAFALPILQALL 122
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K + L+ L+LAPTRELA Q+
Sbjct: 123 DKPQ---------------------------------------PLFGLVLAPTRELAYQI 143
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 144 SKSFEGLGILISVRCAVIVGGMDMVTQSIALGKKPHIIVATPGRLLDHLE--NTKGFSLR 201
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ P L IL + PR+
Sbjct: 202 ALKYLVMDEADRLLDLDFGPILDKILKVL-------PRE--------------------- 233
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+T++FSAT++ SK + + + L+D L ++ T
Sbjct: 234 -----RRTYLFSATMS-------------SKVESLQRAS-----LRDPLRVQIS-----T 265
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K TL +S + H KD+YL Y + G++ I
Sbjct: 266 NKYQTVSTLLQSYLFIPHPHKDTYLIYLLNDFAGQS---------------------AIV 304
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
T+T+ E+ +RL LL L +PLH
Sbjct: 305 FTRTVNET----------------------------------QRLAILLRTLGFGAIPLH 330
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
++Q RL L++FR + IL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRT
Sbjct: 331 GQLSQSARLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDLPPDSKTYIHRVGRT 390
Query: 636 ARANNEG--LTVVLIESDEIPLKTKFNLQEEEN 666
ARA G +++V EI L+ + L ++N
Sbjct: 391 ARAGKSGHAISIVTQYDVEIWLRIEAALGMKQN 423
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG L
Sbjct: 130 GLVLAPTRELAYQISKSFEGLGILISVRCAVIVGGMDMVTQSIALGKKPHIIVATPGRL 188
>gi|390933807|ref|YP_006391312.1| DEAD/DEAH box helicase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569308|gb|AFK85713.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 513
Score = 219 bits (558), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/447 (31%), Positives = 226/447 (50%), Gaps = 72/447 (16%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ E I++A+ GF+ P+KIQS V+P LL D++G AETG+GKTLA+G PI+
Sbjct: 2 DFKELNLNEKILKAIDDMGFEEPSKIQSEVIP-VLLEGLDVIGQAETGTGKTLAYGAPII 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
ND K++ LIL PTREL
Sbjct: 61 NNF----------SSNDG-----------------------------KVFCLILTPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
AIQV + + GKY+ V++ V GG+ ++Q++ + + I+V TPGR+ + I+ ++
Sbjct: 82 AIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIVVGTPGRVLDLIKR---NV 138
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+L + YLVIDE D M++ G ++K I++ T++ RQT +FSAT+ +KN
Sbjct: 139 LDLKSVRYLVIDEADEMLDMGFIDDIKEIIN-----HTNRERQTMMFSATMPDEIKN--- 190
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
L K KS + K + + +K T+ K+ E+ +S
Sbjct: 191 LAKKYMKS--------------------NAKFISIVKKTMTVSTVQHFYYEVKNQERFES 230
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ P T++FC + V LT+ + + +H M+Q QR+ L +F++
Sbjct: 231 LCRILDVDEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGI 290
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
L+ATDVAARG+DI + HVI+Y++P+ E Y+HR GRT RAN G+ L+ S E P
Sbjct: 291 LDFLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYP 350
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSL 1214
++ + K+ + P + +L +
Sbjct: 351 ALKRIEKATRCKIKRKELPTVDDILEV 377
Score = 134 bits (337), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 129/238 (54%), Gaps = 49/238 (20%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ E I++A+ GF+ P+KIQS V+P LL D++G AETG+GKTLA+G PI+
Sbjct: 2 DFKELNLNEKILKAIDDMGFEEPSKIQSEVIP-VLLEGLDVIGQAETGTGKTLAYGAPII 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
ND K++ LIL PTREL
Sbjct: 61 NNF----------SSNDG-----------------------------KVFCLILTPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
AIQV + + GKY+ V++ V GG+ ++Q++ + + I+V TPGR+ + I+ ++
Sbjct: 82 AIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIVVGTPGRVLDLIKR---NV 138
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNI 388
+L + YLVIDE D M++ G ++K I++ T++ RQTM+ S P E+KN+
Sbjct: 139 LDLKSVRYLVIDEADEMLDMGFIDDIKEIIN-----HTNRERQTMMFSATMPDEIKNL 191
Score = 98.2 bits (243), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 68/114 (59%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+ P T++FC + V LT+ + + +H M+Q QR+ L +F++ L+A
Sbjct: 237 VDEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFLVA 296
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
TDVAARG+DI + HVI+Y++P+ E Y+HR GRT RAN G+ L+ S E P
Sbjct: 297 TDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYP 350
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
LIL PTRELAIQV + + GKY+ V++ V GG+ ++Q++ + + I+V TPG +
Sbjct: 72 CLILTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIVVGTPGRVL 131
Query: 1415 -SLKR--IDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+KR +DL KS+ YL + D L DM I D + +I R+ + S
Sbjct: 132 DLIKRNVLDL-KSVRYLVI----DEADEML-----DMGFIDDIKEIINHTNRERQTMMFS 181
Query: 1472 KALVSKRKELQSLLGKS 1488
+ + K L KS
Sbjct: 182 ATMPDEIKNLAKKYMKS 198
>gi|358399923|gb|EHK49260.1| hypothetical protein TRIATDRAFT_143973 [Trichoderma atroviride IMI
206040]
Length = 479
Score = 219 bits (557), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/457 (30%), Positives = 228/457 (49%), Gaps = 79/457 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + I +++ A +KTPT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 57 FKELGIVDSLCEACESLNYKTPTSIQARSIPVALQGR-DVIGLAETGSGKTAAFALPILQ 115
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LE P + L+LAPTRELA
Sbjct: 116 AL---LEKP------------------------------------QPFFGLVLAPTRELA 136
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ G ++ A +VGG+ Q L K PHI+VATPGRL + H T
Sbjct: 137 AQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVD-----HLEKT 191
Query: 950 E---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
+ L + YLV+DE DR+++ P + IL + + R+T++FSAT++ +++
Sbjct: 192 KGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFI-----PRERRTYLFSATMSSKVESL 246
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
++ S DP+ ++ + K TL + + H KD
Sbjct: 247 ----------QRASLRDPA-------------RVSVSSNKYQTVSTLLQHYVFIPHKRKD 283
Query: 1067 SYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
+YL Y + + G++++ F ++ +R+ LL L +PLH ++Q RL L++F+
Sbjct: 284 TYLIYLVNEFAGKSIIIFTRTVFEAQRVAILLRTLGFGAIPLHGQLSQSARLGALNKFKG 343
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+ IL+ATDVAARGLDIP ++ V+++ +P+ S+ YIHR GRTARA G+ + + +
Sbjct: 344 GSREILVATDVAARGLDIPAVDVVLNHDLPQDSKTYIHRVGRTARAGKSGIAISIATQYD 403
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
+ +Y ++ +L K++D +P + + + R+D A
Sbjct: 404 LEIYQRIEAALGKELD--QYPTEREEVMAFQSRVDEA 438
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 144/532 (27%), Positives = 225/532 (42%), Gaps = 167/532 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + I +++ A +KTPT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 57 FKELGIVDSLCEACESLNYKTPTSIQARSIPVALQGR-DVIGLAETGSGKTAAFALPILQ 115
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LE P + L+LAPTRELA
Sbjct: 116 AL---LEKP------------------------------------QPFFGLVLAPTRELA 136
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ G ++ A +VGG+ Q L K PHI+VATPGRL + H T
Sbjct: 137 AQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVD-----HLEKT 191
Query: 333 E---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+ L + YLV+DE DR+++ P + IL + PR+
Sbjct: 192 KGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFI-------PRE--------------- 229
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
R+T++FSAT++ +++ ++ S DP+
Sbjct: 230 -----------RRTYLFSATMSSKVES----------LQRASLRDPA------------- 255
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
++ + K TL + + H KD+YL Y + + G+++
Sbjct: 256 RVSVSSNKYQTVSTLLQHYVFIPHKRKDTYLIYLVNEFAGKSI----------------- 298
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
I T+T+ E+ +R+ LL L
Sbjct: 299 ----IIFTRTVFEA----------------------------------QRVAILLRTLGF 320
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+PLH ++Q RL L++F+ + IL+ATDVAARGLDIP ++ V+++ +P+ S+ YI
Sbjct: 321 GAIPLHGQLSQSARLGALNKFKGGSREILVATDVAARGLDIPAVDVVLNHDLPQDSKTYI 380
Query: 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTE 681
HR GRTARA G+ I + T+++L+ + E E D+ TE
Sbjct: 381 HRVGRTARAGKSGIA--------ISIATQYDLEIYQRIEAALGKELDQYPTE 424
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ L+LAPTRELA Q+ G ++ A +VGG+ Q L K PHI+VATPG
Sbjct: 124 FFGLVLAPTRELAAQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGR 183
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
L K L +S++YL + D L DMD + +++ R
Sbjct: 184 LVDHLEKTKGFSL-RSLKYL----VMDEADRLL-----DMDFGPSIDKILKFIPRERRTY 233
Query: 1469 LMSKALVSKRKELQ 1482
L S + SK + LQ
Sbjct: 234 LFSATMSSKVESLQ 247
>gi|84468282|dbj|BAE71224.1| putative replication protein A1 [Trifolium pratense]
Length = 440
Score = 219 bits (557), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 157/475 (33%), Positives = 237/475 (49%), Gaps = 75/475 (15%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
+M + +PE ++ A G+KTP KIQ +P AL KD++G A+TGSGKT AF +
Sbjct: 7 EMKSFKDLGLPEELVEACDNLGWKTPLKIQIEAIPLALQG-KDVIGLAQTGSGKTGAFAL 65
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
PIL + L+ P N +A +L+PT
Sbjct: 66 PILHAL---LQAPRP----------------------------------NHFFACVLSPT 88
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
RELAIQ+ G VK A +VGG+ +Q + K PHI+V TPGR+ + L +
Sbjct: 89 RELAIQISEQFEALGSGIGVKSAVLVGGIDMVQQSIKIAKHPHIIVGTPGRVLD--HLKN 146
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
L K+ YLV+DE DR++ L IL + + R+TF+FSAT+T
Sbjct: 147 TKGFSLSKLKYLVLDEADRLLNEDFEESLNEILGMI-----PRERRTFLFSATMT----- 196
Query: 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 1065
KKV K LQ + +++P ++ + K TL + K
Sbjct: 197 -----------KKVEK-------LQRVC-LRNPVKIEASTKYSTVDTLKQQYRFLPAKRK 237
Query: 1066 DSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
D YL Y + + G T +VF + + + L +L L +P++ M+Q +RL L++F+
Sbjct: 238 DCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFK 297
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+ +ILL TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+
Sbjct: 298 SGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQY 357
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL---ESKIKKNR 1236
E+ YI++ + KK LP++P E + L+++R+ AK + ES KK R
Sbjct: 358 ELEWYIQIEKLIGKK--LPEYPAQEEEVLLLEERVSEAKRLAATKMKESGGKKKR 410
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 143/505 (28%), Positives = 214/505 (42%), Gaps = 152/505 (30%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
+M + +PE ++ A G+KTP KIQ +P AL KD++G A+TGSGKT AF +
Sbjct: 7 EMKSFKDLGLPEELVEACDNLGWKTPLKIQIEAIPLALQG-KDVIGLAQTGSGKTGAFAL 65
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
PIL + L+ P N +A +L+PT
Sbjct: 66 PILHAL---LQAPRP----------------------------------NHFFACVLSPT 88
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
RELAIQ+ G VK A +VGG+ +Q + K PHI+V TPGR+ + L +
Sbjct: 89 RELAIQISEQFEALGSGIGVKSAVLVGGIDMVQQSIKIAKHPHIIVGTPGRVLD--HLKN 146
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
L K+ YLV+DE DR++ L IL + PR+
Sbjct: 147 TKGFSLSKLKYLVLDEADRLLNEDFEESLNEILGMI-------PRE-------------- 185
Query: 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 448
R+TF+FSAT+T KKV K LQ + +++
Sbjct: 186 ------------RRTFLFSATMT----------------KKVEK-------LQRVC-LRN 209
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508
P ++ + K TL + KD YL Y + + G T
Sbjct: 210 PVKIEASTKYSTVDTLKQQYRFLPAKRKDCYLVYILTEMAGST----------------- 252
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 568
+ T+T +++L IL++ G
Sbjct: 253 ----SMVFTRTCDATRLLA-----------LILRNLG----------------------- 274
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
+P++ M+Q +RL L++F+ + +ILL TDVA+RGLDIP ++ VI+Y +P S+ Y
Sbjct: 275 LKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDY 334
Query: 629 IHRSGRTARANNEGLTVVLIESDEI 653
IHR GRTARA G+ + L+ E+
Sbjct: 335 IHRVGRTARAGRSGVAISLVNQYEL 359
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
A +L+PTRELAIQ+ G VK A +VGG+ +Q + K PHI+V TPG
Sbjct: 82 ACVLSPTRELAIQISEQFEALGSGIGVKSAVLVGGIDMVQQSIKIAKHPHIIVGTPG 138
Score = 41.6 bits (96), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G+ + L+ E+ YI++ + KK LP++P E + L+++R+
Sbjct: 333 DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKK--LPEYPAQEEEVLLLEERV 390
Query: 1299 DLAKSIEYL---ESKIKKNR 1315
AK + ES KK R
Sbjct: 391 SEAKRLAATKMKESGGKKKR 410
>gi|196000560|ref|XP_002110148.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
gi|190588272|gb|EDV28314.1| hypothetical protein TRIADDRAFT_21567, partial [Trichoplax adhaerens]
Length = 424
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 152/465 (32%), Positives = 240/465 (51%), Gaps = 77/465 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E + +A + +K PTKIQ +P AL KDI+G AETGSGKT AF +PIL +++K +
Sbjct: 4 EPLCQACDRLQWKQPTKIQCEAIPVALTG-KDIIGLAETGSGKTAAFVLPILQALLDKPQ 62
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
+L+ALIL PTRELA Q+ I
Sbjct: 63 ---------------------------------------RLFALILTPTRELAFQISEQI 83
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
G V+ A ++GG+ Q +L K PHI++ TPGRL + L + L + Y
Sbjct: 84 EALGSSIGVQCAVIIGGIDMMTQSIMLAKKPHIIIGTPGRLAD--HLANTKGFSLRPLKY 141
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
LV+DE DR++ E+ IL + + R+T++FSAT+T
Sbjct: 142 LVMDEADRILNMDFEAEVDKILSVL-----PKERRTYLFSATMT---------------- 180
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
KKV K+LQ +++ P ++++ K + L ++ I KD YL + +
Sbjct: 181 KKV-------KKLQRA-SVQDPVKIEVSTKYTTVEKLQQTYIFVPAKYKDCYLVSILNEL 232
Query: 1077 PGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
G + +VFC + + +R+ +L L + +PLH M+Q +RL L +F+ + +SIL+ATD
Sbjct: 233 AGNSFMVFCATCINTQRIGLMLRNLGFNAIPLHGQMSQSKRLGALHKFKSKESSILVATD 292
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195
VA+RGLDIP ++ VI++ P S+ YIHR GRTARA G +++ + ++ L+ ++
Sbjct: 293 VASRGLDIPHVDIVINFDAPSHSKDYIHRVGRTARAGRSGRSIIFVTQYDVELFQRIEQL 352
Query: 1196 LEKKVDLPDFPIDESVLSLIKKRIDLAK---SIEYLESKIKKNRP 1237
+ KK LP++P E + L+ +R+ A+ +E E+ KK RP
Sbjct: 353 IAKK--LPEYPTVEEEVMLLMERVAEAQRYAKMELQETMNKKRRP 395
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 150/547 (27%), Positives = 236/547 (43%), Gaps = 166/547 (30%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E + +A + +K PTKIQ +P AL KDI+G AETGSGKT AF +PIL +++K +
Sbjct: 4 EPLCQACDRLQWKQPTKIQCEAIPVALTG-KDIIGLAETGSGKTAAFVLPILQALLDKPQ 62
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
+L+ALIL PTRELA Q+ I
Sbjct: 63 ---------------------------------------RLFALILTPTRELAFQISEQI 83
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
G V+ A ++GG+ Q +L K PHI++ TPGRL + L + L + Y
Sbjct: 84 EALGSSIGVQCAVIIGGIDMMTQSIMLAKKPHIIIGTPGRLAD--HLANTKGFSLRPLKY 141
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399
LV+DE DR++ E+ IL + P++
Sbjct: 142 LVMDEADRILNMDFEAEVDKILSVL-------PKE------------------------- 169
Query: 400 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG 459
R+T++FSAT+T KKV K+LQ +++ P ++++ K
Sbjct: 170 -RRTYLFSATMT----------------KKV-------KKLQR-ASVQDPVKIEVSTKYT 204
Query: 460 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKT 519
+ L ++ I KD YL + + G
Sbjct: 205 TVEKLQQTYIFVPAKYKDCYLVSILNELAG------------------------------ 234
Query: 520 LTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 579
+S++ + C + + +R+ +L L + +PLH M+
Sbjct: 235 -------------NSFMVF------------CATCINTQRIGLMLRNLGFNAIPLHGQMS 269
Query: 580 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 639
Q +RL L +F+ + +SIL+ATDVA+RGLDIP ++ VI++ P S+ YIHR GRTARA
Sbjct: 270 QSKRLGALHKFKSKESSILVATDVASRGLDIPHVDIVINFDAPSHSKDYIHRVGRTARAG 329
Query: 640 NEGLTVVLIESDEIPLKTKF------NLQEEENNEEE-----ER-AEADKEKTEDINVTV 687
G +++ + ++ L + L E EEE ER AEA + ++ T+
Sbjct: 330 RSGRSIIFVTQYDVELFQRIEQLIAKKLPEYPTVEEEVMLLMERVAEAQRYAKMELQETM 389
Query: 688 SSKKKKL 694
+ K++ L
Sbjct: 390 NKKRRPL 396
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALIL PTRELA Q+ I G V+ A ++GG+ Q +L K PHI++ TPG L+
Sbjct: 66 ALILTPTRELAFQISEQIEALGSSIGVQCAVIIGGIDMMTQSIMLAKKPHIIIGTPGRLA 125
Score = 46.6 bits (109), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK 1234
GL L + + IPL+ +M S ++ L F ES + + I +++ I
Sbjct: 251 GLMLRNLGFNAIPLHGQMSQS-KRLGALHKFKSKESSILVATDVASRGLDIPHVDIVINF 309
Query: 1235 NRPD---NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVL 1291
+ P +++HR GRTARA G +++ + ++ L+ ++ + KK LP++P E +
Sbjct: 310 DAPSHSKDYIHRVGRTARAGRSGRSIIFVTQYDVELFQRIEQLIAKK--LPEYPTVEEEV 367
Query: 1292 SLIKKRIDLAK---SIEYLESKIKKNRP-DNWLEKAA 1324
L+ +R+ A+ +E E+ KK RP D+ E AA
Sbjct: 368 MLLMERVAEAQRYAKMELQETMNKKRRPLDDEEEGAA 404
>gi|451996880|gb|EMD89346.1| hypothetical protein COCHEDRAFT_1141477 [Cochliobolus heterostrophus
C5]
Length = 518
Score = 218 bits (556), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/467 (31%), Positives = 234/467 (50%), Gaps = 80/467 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E + A F PT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 91 FADLGVREELCDACENLKFTNPTPIQAQAIPLALQGR-DVIGLAETGSGKTAAFVLPILQ 149
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ K + L+ LILAPTRELA
Sbjct: 150 ALLEK---------------------------------------QQSLFGLILAPTRELA 170
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ + G VK A +VGGM Q L+K PHI+VATPGRL + ++ F L
Sbjct: 171 YQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPHIIVATPGRLLDHLENTKGFSL 230
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L Y+V+DE DR+++ P +LD++ + R T++FSAT+
Sbjct: 231 KHL---KYMVLDEADRLLDLDFGP----VLDKILKVLPREGRHTYLFSATM--------- 274
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG-ITKTLTESKILCKHDEKDS 1067
S KV S++R +++P V ++ + TL + I H KD
Sbjct: 275 -------SSKVE----SLQRAA----LQNPVRVSISSSSHQVVSTLLQRYIFLPHKYKDL 319
Query: 1068 YLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
YL + + + HP T++F +++ +R+ LL L +PLH ++Q RL L++F+
Sbjct: 320 YLIHLLNDNIGHP--TIIFSRTVNETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFK 377
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
Q+ IL+ATDVAARGLDIP ++ V+++ +P S+ Y+HR GRTARA G + +
Sbjct: 378 TQSRDILVATDVAARGLDIPAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQY 437
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ +++++ N+L K++ P+ I++ + +R++ A+ I E K
Sbjct: 438 DLEIWLRIENALGKQI--PEEVINKDEAMVYMERVNEAQRIAVREMK 482
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 206/498 (41%), Gaps = 156/498 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E + A F PT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 91 FADLGVREELCDACENLKFTNPTPIQAQAIPLALQGR-DVIGLAETGSGKTAAFVLPILQ 149
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ K + L+ LILAPTRELA
Sbjct: 150 ALLEK---------------------------------------QQSLFGLILAPTRELA 170
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ + G VK A +VGGM Q L+K PHI+VATPGRL + ++ F L
Sbjct: 171 YQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPHIIVATPGRLLDHLENTKGFSL 230
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L Y+V+DE DR+++ P L IL + PR+
Sbjct: 231 KHL---KYMVLDEADRLLDLDFGPVLDKILKVL-------PREG---------------- 264
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R T++FSAT+ S KV S++R +++P
Sbjct: 265 ---------RHTYLFSATM----------------SSKVE----SLQRAA----LQNPVR 291
Query: 452 VDLTEKIG-ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
V ++ + TL + I H KD YL + + NI P I+
Sbjct: 292 VSISSSSHQVVSTLLQRYIFLPHKYKDLYLIHLLND--------------NIGHPTII-- 335
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
F +++ +R+ LL L
Sbjct: 336 ---------------------------------------FSRTVNETQRIAILLRTLGFG 356
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+PLH ++Q RL L++F+ Q+ IL+ATDVAARGLDIP ++ V+++ +P S+ Y+H
Sbjct: 357 AIPLHGQLSQSARLGALNKFKTQSRDILVATDVAARGLDIPAVDLVVNFDLPSDSQTYVH 416
Query: 631 RSGRTARANNEGLTVVLI 648
R GRTARA G V +
Sbjct: 417 RVGRTARAGKSGKAVSFV 434
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 37/62 (59%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S LILAPTRELA Q+ + G VK A +VGGM Q L+K PHI+VATPG
Sbjct: 157 SLFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPHIIVATPG 216
Query: 1413 AL 1414
L
Sbjct: 217 RL 218
>gi|68473005|ref|XP_719308.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
gi|46441121|gb|EAL00420.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
gi|238880344|gb|EEQ43982.1| ATP-dependent rRNA helicase RRP3 [Candida albicans WO-1]
Length = 399
Score = 218 bits (556), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/438 (32%), Positives = 226/438 (51%), Gaps = 73/438 (16%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
F PT IQS +P AL KDI+G A+TGSGKT AF IPIL + +
Sbjct: 3 FTKPTPIQSEAIPHALEG-KDIIGLAQTGSGKTAAFAIPILQSLWH-------------- 47
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 907
+ +AL+LAPTRELA Q+++ G ++
Sbjct: 48 -------------------------AQQPYFALVLAPTRELAFQIKDTFDALGSSMGLRS 82
Query: 908 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 967
+C+VGGM Q R L + PH++VATPGR+ + ++ H L + YLV+DE DR+++
Sbjct: 83 SCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLE--HTKGFSLKNLKYLVMDEADRLLD 140
Query: 968 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 1027
P L IL + + R T++FSAT+T+ I+
Sbjct: 141 MDFGPALDKILKVIPIK-----RTTYLFSATMTNK-----------------------IE 172
Query: 1028 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNS 1086
+LQ ++ +P V ++ K L +S +L K++ L + + + G+++ VF +
Sbjct: 173 KLQRA-SLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRT 231
Query: 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 1146
++ +R L +L + +PLH ++Q QRL +L++F+ +IL+ATDVAARGLDIP +
Sbjct: 232 VAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSV 291
Query: 1147 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206
+ VI+Y +P S+ YIHR GRTARA G ++ LI ++ +Y+++ + L KK+ D P
Sbjct: 292 DVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLGKKLPKEDKP 351
Query: 1207 IDESVLSLIKKRIDLAKS 1224
E VL + +D A +
Sbjct: 352 PKE-VLDALHVHVDKATA 368
Score = 162 bits (411), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 134/478 (28%), Positives = 206/478 (43%), Gaps = 154/478 (32%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
F PT IQS +P AL KDI+G A+TGSGKT AF IPIL + +
Sbjct: 3 FTKPTPIQSEAIPHALEG-KDIIGLAQTGSGKTAAFAIPILQSLWH-------------- 47
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 290
+ +AL+LAPTRELA Q+++ G ++
Sbjct: 48 -------------------------AQQPYFALVLAPTRELAFQIKDTFDALGSSMGLRS 82
Query: 291 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 350
+C+VGGM Q R L + PH++VATPGR+ + ++ H L + YLV+DE DR+++
Sbjct: 83 SCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLE--HTKGFSLKNLKYLVMDEADRLLD 140
Query: 351 SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
P L IL + + R T++FSAT+
Sbjct: 141 MDFGPALDKILKVIPIK---------------------------------RTTYLFSATM 167
Query: 411 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470
T+ I++LQ ++ +P V ++ K L +S +L
Sbjct: 168 TN-----------------------KIEKLQR-ASLHNPVRVAVSSKYQTADNLVQSMML 203
Query: 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 530
K++ L + + + G+++ I T+T+ H
Sbjct: 204 VNDGYKNTILIHLLNEFMGKSI---------------------IVFTRTVA-------HA 235
Query: 531 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 590
++ + L R L F N++ +L+Q QRL +L++F
Sbjct: 236 QRTALL--------ARILGF-NAVPLHGQLSQ------------------SQRLGSLNKF 268
Query: 591 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+ +IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ LI
Sbjct: 269 KSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLI 326
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+ AL+LAPTRELA Q+++ G ++ +C+VGGM Q R L + PH++VATPG
Sbjct: 52 YFALVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPG 110
>gi|341877652|gb|EGT33587.1| hypothetical protein CAEBREN_24452 [Caenorhabditis brenneri]
Length = 491
Score = 218 bits (556), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/434 (31%), Positives = 221/434 (50%), Gaps = 74/434 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + + + A ++ G+ P+KIQ +P AL KD++G AETGSGKT AF IP+L
Sbjct: 46 FAELGVSQPLCDACHRLGWVKPSKIQQAALPHALQG-KDVIGLAETGSGKTGAFAIPVLQ 104
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ L++P + L+L PTRELA
Sbjct: 105 SL---LDHP------------------------------------QAFFCLVLTPTRELA 125
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G + VA +VGG+ Q L + PHI+VATPGRL + ++ F+L
Sbjct: 126 FQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNL 185
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L +L++DE DR++ EL IL + + R+T++FSAT+T
Sbjct: 186 KAL---KFLIMDEADRILNMDFEVELDKILKVI-----PRERRTYLFSATMT-------- 229
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKVSK + + +++ P V ++ + L + I + K++Y
Sbjct: 230 --------KKVSKLERA--------SLRDPARVSISTRYKTVDNLKQHYIFVPNKYKETY 273
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + +H G + +VFC + ++ ++ +L L +PLH M+Q +RL +L++F+ +
Sbjct: 274 LVYLLNEHAGNSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKA 333
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ TDVAARGLDIP ++ VI+Y +P S+ Y+HR GRTARA GL + ++ ++
Sbjct: 334 REILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVE 393
Query: 1188 LYIKMFNSLEKKVD 1201
Y K+ +L KK+D
Sbjct: 394 AYQKIEANLGKKLD 407
Score = 174 bits (440), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 131/497 (26%), Positives = 211/497 (42%), Gaps = 156/497 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + + + A ++ G+ P+KIQ +P AL KD++G AETGSGKT AF IP+L
Sbjct: 46 FAELGVSQPLCDACHRLGWVKPSKIQQAALPHALQG-KDVIGLAETGSGKTGAFAIPVLQ 104
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ L++P + L+L PTRELA
Sbjct: 105 SL---LDHP------------------------------------QAFFCLVLTPTRELA 125
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G + VA +VGG+ Q L + PHI+VATPGRL + ++ F+L
Sbjct: 126 FQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNL 185
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L +L++DE DR++ EL IL + PR+
Sbjct: 186 KAL---KFLIMDEADRILNMDFEVELDKILKVI-------PRE----------------- 218
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+T++FSAT+T KKVSK + + +++ P
Sbjct: 219 ---------RRTYLFSATMT----------------KKVSKLERA--------SLRDPAR 245
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V ++ + L + I + K++YL Y + +H G +
Sbjct: 246 VSISTRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNS-------------------- 285
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+ + C + ++ ++ +L L
Sbjct: 286 -----------AIVFCA------------------------TCATTMQVAVMLRQLGMQA 310
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL +L++F+ + IL+ TDVAARGLDIP ++ VI+Y +P S+ Y+HR
Sbjct: 311 VPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHR 370
Query: 632 SGRTARANNEGLTVVLI 648
GRTARA GL + ++
Sbjct: 371 VGRTARAGRSGLAITVV 387
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ L+L PTRELA Q+ G + VA +VGG+ Q L + PHI+VATPG
Sbjct: 112 AFFCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRPHIIVATPG 171
Query: 1413 AL 1414
L
Sbjct: 172 RL 173
>gi|340372039|ref|XP_003384552.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Amphimedon
queenslandica]
Length = 451
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 230/446 (51%), Gaps = 75/446 (16%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
I + ++ + G+ TPT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 32 GITSVLCQSCEEMGWTTPTDIQREAIPVALEGR-DVIGLAETGSGKTGAFSLPILQSL-- 88
Query: 834 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
L+ PT +L+AL+L PTRELA Q+
Sbjct: 89 -LDTPT------------------------------------RLFALVLTPTRELAFQIS 111
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
G VK A VVGG+ Q L K PH+++ATPGRL + ++ + L
Sbjct: 112 EQFEALGGRIGVKCAVVVGGVDMMTQALALAKKPHVVIATPGRLVDHLE--NTKGFSLRS 169
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 1013
+ YLV+DE DR++ E+ IL + S+ R+T+++SAT+T
Sbjct: 170 VKYLVMDEADRILNMDFGEEVDKILKVL-----SRERRTYLYSATMT------------- 211
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073
KKV K ++R ++ +P V+++ K L +S I KD YL +
Sbjct: 212 ---KKVQK----LQRA----SLHNPIKVEVSTKYQTVDKLQQSYIFIPSKYKDCYLVSIL 260
Query: 1074 LQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
+ G + +VFC++ ++ +R +L L +PL+ M Q +RL L +F+ ++ SIL+
Sbjct: 261 NEFAGNSFMVFCSTCANTQRTAVMLRNLGLPAIPLYGKMAQMKRLGALSKFKSKSRSILI 320
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G + + ++ LY ++
Sbjct: 321 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRAITFVTQYDVELYQRI 380
Query: 1193 FNSLEKKVDLPDFP-IDESVLSLIKK 1217
+ + KK LP FP ++E VLSL ++
Sbjct: 381 ESLIGKK--LPLFPTVEEEVLSLAER 404
Score = 111 bits (278), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 104/184 (56%), Gaps = 10/184 (5%)
Query: 475 EKDSYLYYFILQHPGRTLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 532
E+ +YLY T+ +++Q L ++ +P V+++ K L +S I K
Sbjct: 200 ERRTYLY-------SATMTKKVQKLQRASLHNPIKVEVSTKYQTVDKLQQSYIFIPSKYK 252
Query: 533 DSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 591
D YL + + G + +VFC++ ++ +R +L L +PL+ M Q +RL L +F+
Sbjct: 253 DCYLVSILNEFAGNSFMVFCSTCANTQRTAVMLRNLGLPAIPLYGKMAQMKRLGALSKFK 312
Query: 592 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651
++ SIL+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G + +
Sbjct: 313 SKSRSILIATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRAITFVTQY 372
Query: 652 EIPL 655
++ L
Sbjct: 373 DVEL 376
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 98/205 (47%), Gaps = 42/205 (20%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
I + ++ + G+ TPT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 32 GITSVLCQSCEEMGWTTPTDIQREAIPVALEGR-DVIGLAETGSGKTGAFSLPILQSL-- 88
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
L+ PT +L+AL+L PTRELA Q+
Sbjct: 89 -LDTPT------------------------------------RLFALVLTPTRELAFQIS 111
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
G VK A VVGG+ Q L K PH+++ATPGRL + ++ + L
Sbjct: 112 EQFEALGGRIGVKCAVVVGGVDMMTQALALAKKPHVVIATPGRLVDHLE--NTKGFSLRS 169
Query: 337 INYLVIDETDRMIESGHFPELKNIL 361
+ YLV+DE DR++ E+ IL
Sbjct: 170 VKYLVMDEADRILNMDFGEEVDKIL 194
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G VK A VVGG+ Q L K PH+++ATPG L
Sbjct: 97 ALVLTPTRELAFQISEQFEALGGRIGVKCAVVVGGVDMMTQALALAKKPHVVIATPGRLV 156
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
+ K L +S++YL + D L +MD + + +++ + R L
Sbjct: 157 DHLENTKGFSL-RSVKYL----VMDEADRIL-----NMDFGEEVDKILKVLSRERRTYLY 206
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 207 SATMTKKVQKLQ 218
Score = 42.7 bits (99), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESVLSLIKK 1296
+++HR GRTARA G + + ++ LY ++ + + KK LP FP ++E VLSL ++
Sbjct: 348 DYIHRVGRTARAGRSGRAITFVTQYDVELYQRIESLIGKK--LPLFPTVEEEVLSLAER 404
>gi|367014487|ref|XP_003681743.1| hypothetical protein TDEL_0E02890 [Torulaspora delbrueckii]
gi|359749404|emb|CCE92532.1| hypothetical protein TDEL_0E02890 [Torulaspora delbrueckii]
Length = 501
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 149/481 (30%), Positives = 241/481 (50%), Gaps = 75/481 (15%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ NI +++A F PT IQ+ +P AL KDI+G A+TGSGKT AF +PIL
Sbjct: 83 FSGLNIVPELLQACKNLNFTKPTPIQAKAIPPALEG-KDIIGLAQTGSGKTAAFALPIL- 140
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
N+L + ++ YA IL+PTRELA
Sbjct: 141 ---NRLWH-----------------------------------DQSPYYACILSPTRELA 162
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q++ G + C+VGGM+ Q R L + PHI++ATPGRL + ++ +
Sbjct: 163 QQIKETFDSLGTIMGARTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGF 220
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L K+ +LV+DE DR+++ P +LDR+ +Q R T++FSAT+T +
Sbjct: 221 SLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQGRTTYLFSATMTSKI------ 270
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
K ++ S DP +K ++ K TL ++ ++ K+++L
Sbjct: 271 ----DKLQRASLTDP----------VKCA----VSNKYQTVDTLVQTLMVVPGGLKNTFL 312
Query: 1070 YYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + + G+T ++F + ++ +R++ L +L+ + LH +NQ QR LD F+
Sbjct: 313 IYLLNEFIGKTTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRR 372
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 373 SILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 432
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTA 1248
+++ L KK LP +D ++ ++ +D A +E + + + GR +
Sbjct: 433 ILRIEEVLGKK--LPKENVDRDLVMSLRNSVDKANGEVIME--LNRRNKEKIARSGGRRS 488
Query: 1249 R 1249
R
Sbjct: 489 R 489
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 142/503 (28%), Positives = 215/503 (42%), Gaps = 153/503 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ NI +++A F PT IQ+ +P AL KDI+G A+TGSGKT AF +PIL
Sbjct: 83 FSGLNIVPELLQACKNLNFTKPTPIQAKAIPPALEG-KDIIGLAQTGSGKTAAFALPIL- 140
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
N+L + ++ YA IL+PTRELA
Sbjct: 141 ---NRLWH-----------------------------------DQSPYYACILSPTRELA 162
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q++ G + C+VGGM+ Q R L + PHI++ATPGRL + ++ +
Sbjct: 163 QQIKETFDSLGTIMGARTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLE--NTKGF 220
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L K+ +LV+DE DR+++ P +LDR+
Sbjct: 221 SLRKLKFLVMDEADRLLDMEFGP--------------------------------VLDRI 248
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
+Q R T++FSAT+T + K ++ S DP +K
Sbjct: 249 LKIIPTQGRTTYLFSATMTSKI----------DKLQRASLTDP----------VKCA--- 285
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
++ K TL ++ ++ K+++L Y + + G+T
Sbjct: 286 -VSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKT--------------------- 323
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
T T +K + E+ S L CN +L+ +
Sbjct: 324 ----TIIFTRTK---ANAERISGL--------------CN-------------LLEFNAT 349
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
LH +NQ QR LD F+ SIL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR
Sbjct: 350 ALHGDLNQNQRTGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRV 409
Query: 633 GRTARANNEGLTVVLIESDEIPL 655
GRTARA G ++ L+ ++ L
Sbjct: 410 GRTARAGRSGKSISLVSQYDLEL 432
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A IL+PTRELA Q++ G + C+VGGM+ Q R L + PHI++ATPG
Sbjct: 150 YYACILSPTRELAQQIKETFDSLGTIMGARTTCIVGGMNMMDQARDLMRKPHIIIATPGR 209
Query: 1414 L 1414
L
Sbjct: 210 L 210
>gi|71022263|ref|XP_761361.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
gi|74699927|sp|Q4P3U9.1|RRP3_USTMA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|46097669|gb|EAK82902.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
Length = 551
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 145/454 (31%), Positives = 229/454 (50%), Gaps = 76/454 (16%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
E+ + I+ A GFK PT IQ +P AL AR D++G A+TGSGKT AF IPIL
Sbjct: 105 EFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQAR-DVIGLAQTGSGKTAAFTIPIL 163
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
+ +NP +A +LAPTREL
Sbjct: 164 QAL---WDNP------------------------------------KPFFACVLAPTREL 184
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A Q+ + G V+ A +VGGM Q L+K PH++VATPGRL + ++ +
Sbjct: 185 AYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQDHLE--NTKG 242
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L + YLV+DE DR+++ P + +L + + R+T +FSAT+T
Sbjct: 243 FSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSI-----PRERRTMLFSATMT-------- 289
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KV+K ++R ++K+P V++ K TL + + KD+Y
Sbjct: 290 --------TKVAK----LQRA----SLKNPVRVEVDTKYTTVSTLKQHYMFMPFAHKDTY 333
Query: 1069 LYYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + G ++ VF ++ +RL+ LL +L +PLH ++Q+ RL L++F+
Sbjct: 334 LVHLANEQAGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGG 393
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL+ATDVA+RGLDIP ++ V++Y +P S+ YIHR GRTARA G ++ L+ ++
Sbjct: 394 RSILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVE 453
Query: 1188 LYIKMFNSLEKKVDLPDFPI--DESVLSLIKKRI 1219
L ++ + K + +FP D+ + L+ +R+
Sbjct: 454 LLQRIEAVIGLK--MTEFPGGNDKEAVMLLSERV 485
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 159/575 (27%), Positives = 244/575 (42%), Gaps = 165/575 (28%)
Query: 92 SANTNDPDD-----QVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDM 146
++N+ND D ++ EE +S E S+ SA+K+ D +E
Sbjct: 34 TSNSNDDQDGHVSEDMSDAEEGESQEHSASGSGISDHDDDDDPSADKDSPAADEEQDEKK 93
Query: 147 FVQMA------EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
+A E+ + I+ A GFK PT IQ +P AL AR D++G A+TGS
Sbjct: 94 VATIADDGKKVEFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQAR-DVIGLAQTGS 152
Query: 201 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 260
GKT AF IPIL + +NP
Sbjct: 153 GKTAAFTIPILQAL---WDNP------------------------------------KPF 173
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
+A +LAPTRELA Q+ + G V+ A +VGGM Q L+K PH++VATPGRL
Sbjct: 174 FACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRL 233
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
+ ++ + L + YLV+DE DR+++ P + +L + PR+
Sbjct: 234 QDHLE--NTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSI-------PRE------ 278
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
R+T +FSAT+T KV+K ++R
Sbjct: 279 --------------------RRTMLFSATMT----------------TKVAK----LQR- 297
Query: 441 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500
++K+P V++ K TL + + KD+YL + + G ++
Sbjct: 298 ---ASLKNPVRVEVDTKYTTVSTLKQHYMFMPFAHKDTYLVHLANEQAGHSI-------- 346
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 560
I T+T+ +S +RL
Sbjct: 347 -------------IVFTRTVHDS----------------------------------QRL 359
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ LL +L +PLH ++Q+ RL L++F+ SIL+ATDVA+RGLDIP ++ V++Y
Sbjct: 360 SILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRGLDIPAVDLVVNYD 419
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+P S+ YIHR GRTARA G +V L+ ++ L
Sbjct: 420 IPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVEL 454
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 25/146 (17%)
Query: 1350 LRYSWD------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
L+ WD A +LAPTRELA Q+ + G V+ A +VGGM Q L+K
Sbjct: 163 LQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKR 222
Query: 1404 PHILVATPGAL-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI--IIDDEN 1456
PH++VATPG L + K L + ++YL + D L DMD IID
Sbjct: 223 PHVIVATPGRLQDHLENTKGFSL-RGLQYL----VMDEADRLL-----DMDFGPIID--K 270
Query: 1457 LIQPKANSRENALMSKALVSKRKELQ 1482
L+Q R L S + +K +LQ
Sbjct: 271 LLQSIPRERRTMLFSATMTTKVAKLQ 296
>gi|330923108|ref|XP_003300102.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
gi|311325897|gb|EFQ91780.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
Length = 516
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 145/467 (31%), Positives = 233/467 (49%), Gaps = 80/467 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ I E + A FK PT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 88 FADLGIREELCDACENLKFKNPTPIQTQAIPLALEGR-DVIGLAETGSGKTAAFVLPILQ 146
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LE P L+ LILAPTRELA
Sbjct: 147 SL---LEKP------------------------------------QPLFGLILAPTRELA 167
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ + G VK A +VGGM Q L+K PHI+VATPGRL + ++ F L
Sbjct: 168 YQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDHLENTKGFSL 227
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L Y+V+DE DR+++ P +LD++ + R T++FSAT++ ++N
Sbjct: 228 KHL---KYMVLDEADRLLDLDFGP----VLDKILKVLPREGRHTYLFSATMSSKVEN--- 277
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG-ITKTLTESKILCKHDEKDS 1067
L++ +++P V ++ + TL + H KD
Sbjct: 278 LQRAA---------------------LQNPVRVSISSSSHQVVSTLLQRYAFIPHKYKDL 316
Query: 1068 YLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
YL + + + HP T++F +++ +R+ LL L +PLH ++Q RL L++F+
Sbjct: 317 YLIHLLNDNIGHP--TIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFK 374
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
++ IL+ATDVAARGLDIP ++ ++++ +P S+ Y+HR GRTARA G + +
Sbjct: 375 SKSRDILVATDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQY 434
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ +++++ ++L KK+ F DE+++ + R+ A+ + E K
Sbjct: 435 DLEIWLRIEHALGKKIPEQTFDKDEAMVYM--DRVSEAQRVAIREMK 479
Score = 175 bits (444), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 208/498 (41%), Gaps = 156/498 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ I E + A FK PT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 88 FADLGIREELCDACENLKFKNPTPIQTQAIPLALEGR-DVIGLAETGSGKTAAFVLPILQ 146
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LE P L+ LILAPTRELA
Sbjct: 147 SL---LEKP------------------------------------QPLFGLILAPTRELA 167
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ + G VK A +VGGM Q L+K PHI+VATPGRL + ++ F L
Sbjct: 168 YQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDHLENTKGFSL 227
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L Y+V+DE DR+++ P L IL + PR+
Sbjct: 228 KHL---KYMVLDEADRLLDLDFGPVLDKILKVL-------PREG---------------- 261
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R T++FSAT++ ++ NL++ +++P
Sbjct: 262 ---------RHTYLFSATMSSKVE---NLQRAA---------------------LQNPVR 288
Query: 452 VDLTEKIG-ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
V ++ + TL + H KD YL + + NI P I+
Sbjct: 289 VSISSSSHQVVSTLLQRYAFIPHKYKDLYLIHLLND--------------NIGHPTII-- 332
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
T+T+ E+ +R+ LL L
Sbjct: 333 -----FTRTVNET----------------------------------QRIAVLLRALGFG 353
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+PLH ++Q RL L++F+ ++ IL+ATDVAARGLDIP ++ ++++ +P S+ Y+H
Sbjct: 354 AIPLHGQLSQSARLGALNKFKSKSRDILVATDVAARGLDIPAVDLIVNFDLPSDSQTYVH 413
Query: 631 RSGRTARANNEGLTVVLI 648
R GRTARA G V +
Sbjct: 414 RVGRTARAGKSGKAVSFV 431
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 36/59 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LILAPTRELA Q+ + G VK A +VGGM Q L+K PHI+VATPG L
Sbjct: 157 GLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRL 215
>gi|442762935|gb|JAA73626.1| Putative atp-dependent rna helicase, partial [Ixodes ricinus]
Length = 429
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 234/461 (50%), Gaps = 76/461 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I + + A Q +K+PTKIQ +P AL KD++G AETGSGKT +F +PIL +
Sbjct: 30 LGIVDVLCEACEQLKWKSPTKIQKESIPLALQG-KDVIGLAETGSGKTGSFALPILQAL- 87
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 88 --LETP------------------------------------QRLFALVLTPTRELAFQI 109
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G VK A VVGG+ Q L K PH+++ATPGRL + ++ F L L
Sbjct: 110 SEQFEALGAGIGVKCAVVVGGIDMMTQALTLAKKPHVVIATPGRLVDHLENTKGFSLKAL 169
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL RV E R T+++SAT+T
Sbjct: 170 ---KYLVMDEADRILNMDFEEEVDKIL-RVIPRE----RHTYLYSATMT----------- 210
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R ++K P V+++ K + L + + KD YL +
Sbjct: 211 -----KKVQK----LQRA----SLKDPVKVEVSSKYQTVEKLMQYYLFIPAKFKDVYLVH 257
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + +VFC++ S+ +R LL L + +PLH M Q +RL L++F+ +N SI
Sbjct: 258 LLNELAGNSFMVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGALNKFKSKNRSI 317
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L+ATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ LY
Sbjct: 318 LIATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQ 377
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ + + KK LP + E + ++ +R+ A+ +E K
Sbjct: 378 RIEHLIGKK--LPLYQTSEEEVMVLMERVTEAQRFAKMELK 416
Score = 177 bits (448), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 142/501 (28%), Positives = 214/501 (42%), Gaps = 156/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I + + A Q +K+PTKIQ +P AL KD++G AETGSGKT +F +PIL +
Sbjct: 30 LGIVDVLCEACEQLKWKSPTKIQKESIPLALQG-KDVIGLAETGSGKTGSFALPILQAL- 87
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 88 --LETP------------------------------------QRLFALVLTPTRELAFQI 109
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G VK A VVGG+ Q L K PH+++ATPGRL + ++ F L L
Sbjct: 110 SEQFEALGAGIGVKCAVVVGGIDMMTQALTLAKKPHVVIATPGRLVDHLENTKGFSLKAL 169
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR+
Sbjct: 170 ---KYLVMDEADRILNMDFEEEVDKILRVI-------PRE-------------------- 199
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R T+++SAT+T KKV K ++R ++K P V++
Sbjct: 200 ------RHTYLYSATMT----------------KKVQK----LQR----ASLKDPVKVEV 229
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD YL + + + G
Sbjct: 230 SSKYQTVEKLMQYYLFIPAKFKDVYLVHLLNELAG------------------------- 264
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ S+ +R LL L + +PL
Sbjct: 265 ------------------NSFMVF------------CSTCSNTQRTALLLRNLGFTAIPL 294
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M Q +RL L++F+ +N SIL+ATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 295 HGQMGQAKRLGALNKFKSKNRSILIATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGR 354
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G + + ++ L
Sbjct: 355 TARAGRSGKAITFVTQYDVEL 375
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G VK A VVGG+ Q L K PH+++ATPG L
Sbjct: 96 ALVLTPTRELAFQISEQFEALGAGIGVKCAVVVGGIDMMTQALTLAKKPHVVIATPGRL 154
>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
Length = 383
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 231/448 (51%), Gaps = 76/448 (16%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 1 GVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL-- 57
Query: 834 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
LE P +L+AL+L PTRELA Q+
Sbjct: 58 -LETP------------------------------------QRLFALVLTPTRELAFQIS 80
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELY 952
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 81 EQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL- 139
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 140 --KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT------------ 180
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 181 ----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI 228
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SIL
Sbjct: 229 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 288
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
LATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L+ +
Sbjct: 289 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 348
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRI 1219
+ + + KK LP FP E + ++ +R+
Sbjct: 349 IEHLIGKK--LPVFPTQEDEVMMLTERV 374
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 143/500 (28%), Positives = 215/500 (43%), Gaps = 156/500 (31%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 1 GVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL-- 57
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
LE P +L+AL+L PTRELA Q+
Sbjct: 58 -LETP------------------------------------QRLFALVLTPTRELAFQIS 80
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELY 335
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 81 EQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL- 139
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
YLV+DE DR++ E+ IL + PR
Sbjct: 140 --KYLVMDEADRILNMDFETEVDKILKVI-------PRD--------------------- 169
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+TF+FSAT+T KKV K ++R +K+P ++
Sbjct: 170 -----RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAVS 200
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K + L + + KD+YL Y + + G
Sbjct: 201 SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG-------------------------- 234
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+S++ + C++ ++ +R LL L + +PLH
Sbjct: 235 -----------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPLH 265
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRT
Sbjct: 266 GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRT 325
Query: 636 ARANNEGLTVVLIESDEIPL 655
ARA G + + ++ L
Sbjct: 326 ARAGRSGKAITFVTQYDVEL 345
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 66 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 124
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 125 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 175
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 176 SATMTKKVQKLQ 187
>gi|268573560|ref|XP_002641757.1| Hypothetical protein CBG10097 [Caenorhabditis briggsae]
Length = 486
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/434 (31%), Positives = 220/434 (50%), Gaps = 74/434 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + + + A + G+ P+KIQ +P AL KD++G AETGSGKT AF IP+L
Sbjct: 46 FAELGVSQPLCDACLRLGWTKPSKIQQAALPHALEG-KDVIGLAETGSGKTGAFAIPVLQ 104
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ L++P + L+L PTRELA
Sbjct: 105 SL---LDHP------------------------------------QAFFCLVLTPTRELA 125
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G + VA +VGG+ Q L + PHI+VATPGRL + ++ F+L
Sbjct: 126 FQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNL 185
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L +L++DE DR++ EL IL + + R+T++FSAT+T
Sbjct: 186 KAL---KFLIMDEADRILNMDFEVELDKILKVI-----PKERRTYLFSATMT-------- 229
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKVSK + + +++ P V ++ + L + I + K++Y
Sbjct: 230 --------KKVSKLERA--------SLRDPARVSISTRYKTVDNLKQHYIFIPNKYKETY 273
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + +H G + +VFC + ++ ++ +L L +PLH M+Q +RL +L++F+ +
Sbjct: 274 LVYLLNEHAGNSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKA 333
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ TDVAARGLDIP ++ VI+Y +P S+ Y+HR GRTARA GL + ++ ++
Sbjct: 334 REILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVE 393
Query: 1188 LYIKMFNSLEKKVD 1201
Y K+ +L KK+D
Sbjct: 394 AYQKIEANLGKKLD 407
Score = 172 bits (435), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 130/497 (26%), Positives = 210/497 (42%), Gaps = 156/497 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + + + A + G+ P+KIQ +P AL KD++G AETGSGKT AF IP+L
Sbjct: 46 FAELGVSQPLCDACLRLGWTKPSKIQQAALPHALEG-KDVIGLAETGSGKTGAFAIPVLQ 104
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ L++P + L+L PTRELA
Sbjct: 105 SL---LDHP------------------------------------QAFFCLVLTPTRELA 125
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G + VA +VGG+ Q L + PHI+VATPGRL + ++ F+L
Sbjct: 126 FQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNL 185
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L +L++DE DR++ EL IL + P++
Sbjct: 186 KAL---KFLIMDEADRILNMDFEVELDKILKVI-------PKE----------------- 218
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+T++FSAT+T KKVSK + + +++ P
Sbjct: 219 ---------RRTYLFSATMT----------------KKVSKLERA--------SLRDPAR 245
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V ++ + L + I + K++YL Y + +H G +
Sbjct: 246 VSISTRYKTVDNLKQHYIFIPNKYKETYLVYLLNEHAGNS-------------------- 285
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+ + C + ++ ++ +L L
Sbjct: 286 -----------AIVFCA------------------------TCATTMQVAVMLRQLGMQA 310
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL +L++F+ + IL+ TDVAARGLDIP ++ VI+Y +P S+ Y+HR
Sbjct: 311 VPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHR 370
Query: 632 SGRTARANNEGLTVVLI 648
GRTARA GL + ++
Sbjct: 371 VGRTARAGRSGLAITVV 387
Score = 54.3 bits (129), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ L+L PTRELA Q+ G + VA +VGG+ Q L + PHI+VATPG
Sbjct: 112 AFFCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRPHIIVATPG 171
Query: 1413 AL 1414
L
Sbjct: 172 RL 173
>gi|333895980|ref|YP_004469854.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111245|gb|AEF16182.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 513
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/447 (30%), Positives = 227/447 (50%), Gaps = 72/447 (16%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I++A+ GF+ P+KIQS V+P LL D++G AETG+GKTLA+G PI+
Sbjct: 2 DFKELHLNEKILKAIDDMGFEEPSKIQSEVIP-VLLEGLDVIGQAETGTGKTLAYGAPII 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
ND K++ L+L PTREL
Sbjct: 61 NNF----------SSNDG-----------------------------KVFCLVLTPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
AIQV + + GKY+ V++ V GG+ ++Q++ + + I+V TPGR+ + I+ ++
Sbjct: 82 AIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIVVGTPGRVLDLIKR---NV 138
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+L + YLVIDE D M++ G ++K I++ T++ RQT +FSAT+ +KN
Sbjct: 139 LDLKSVRYLVIDEADEMMDMGFIDDIKEIIN-----HTNKERQTMMFSATMPDEIKNL-- 191
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
+KK K D K + + +K T+ K+ E+ +S
Sbjct: 192 -------AKKYMKSDA--------------KFISIVKKTMTVSTVQHFYYEVKNQERFES 230
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P T++FC + V LT+ + + +H M+Q QR+ L +F++
Sbjct: 231 LCRILDVEEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGI 290
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
L+ATDVAARG+DI + HVI+Y++P+ E Y+HR GRT RAN G+ L+ S E P
Sbjct: 291 LDFLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYP 350
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSL 1214
++ + K+ + P + +L +
Sbjct: 351 ALKRIEKATRCKIKRKELPTVDDILEV 377
Score = 131 bits (330), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 129/238 (54%), Gaps = 49/238 (20%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I++A+ GF+ P+KIQS V+P LL D++G AETG+GKTLA+G PI+
Sbjct: 2 DFKELHLNEKILKAIDDMGFEEPSKIQSEVIP-VLLEGLDVIGQAETGTGKTLAYGAPII 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
ND K++ L+L PTREL
Sbjct: 61 NNF----------SSNDG-----------------------------KVFCLVLTPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
AIQV + + GKY+ V++ V GG+ ++Q++ + + I+V TPGR+ + I+ ++
Sbjct: 82 AIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIVVGTPGRVLDLIKR---NV 138
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNI 388
+L + YLVIDE D M++ G ++K I++ T++ RQTM+ S P E+KN+
Sbjct: 139 LDLKSVRYLVIDEADEMMDMGFIDDIKEIIN-----HTNKERQTMMFSATMPDEIKNL 191
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 69/114 (60%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
++ P T++FC + V LT+ + + +H M+Q QR+ L +F++ L+A
Sbjct: 237 VEEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFLVA 296
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
TDVAARG+DI + HVI+Y++P+ E Y+HR GRT RAN G+ L+ S E P
Sbjct: 297 TDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYP 350
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 19/141 (13%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
L+L PTRELAIQV + + GKY+ V++ V GG+ ++Q++ + + I+V TPG +
Sbjct: 72 CLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIVVGTPGRVL 131
Query: 1415 -SLKR--IDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI-IIDDENLIQPKANSRENALM 1470
+KR +DL KS+ YL +++A + MD+ IDD I N +M
Sbjct: 132 DLIKRNVLDL-KSVRYL-----------VIDEADEMMDMGFIDDIKEIINHTNKERQTMM 179
Query: 1471 SKALVSKRKELQSLLGKSVQS 1491
A + E+++L K ++S
Sbjct: 180 FSATMP--DEIKNLAKKYMKS 198
>gi|367044830|ref|XP_003652795.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
gi|347000057|gb|AEO66459.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
Length = 490
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 142/455 (31%), Positives = 234/455 (51%), Gaps = 79/455 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I +++ A + G+K PT IQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 67 LGIVDSLCDACDRLGYKRPTPIQEQSIPLALQGR-DIIGIAETGSGKTAAFALPILQALL 125
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K + L+AL+LAPTRELA Q+
Sbjct: 126 DKPQ---------------------------------------PLFALVLAPTRELAAQI 146
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A ++GG+ +Q L K PH++VATPGRL L H T+
Sbjct: 147 TQAFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRL-----LDHLEKTKGF 201
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + YLV+DE DR+++ P L+ IL + + R+TF+FSAT++ +++
Sbjct: 202 SLRNLKYLVMDEADRLLDMDFGPILEKILKFL-----PRERRTFLFSATMSSKVESL--- 253
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
++ S DP K+ + K TL ++ + H KD+YL
Sbjct: 254 -------QRASLRDPL-------------KVSISSSKYQTVATLVQNYLFIPHMHKDTYL 293
Query: 1070 YYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + G+T++ F ++ +R+ LL L +PLH ++Q RL L++FR +
Sbjct: 294 IYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSR 353
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+IL+ATDVAARGLDIP ++ V+++ +P+ S+ Y+HR GRTARA G + ++ +I +
Sbjct: 354 NILVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDIEI 413
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
++++ +L K L ++ +++ + + K R++ A+
Sbjct: 414 WLRIEAALGTK--LTEYALEKDEVMVFKPRVEEAQ 446
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/501 (28%), Positives = 217/501 (43%), Gaps = 159/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I +++ A + G+K PT IQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 67 LGIVDSLCDACDRLGYKRPTPIQEQSIPLALQGR-DIIGIAETGSGKTAAFALPILQALL 125
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K + L+AL+LAPTRELA Q+
Sbjct: 126 DKPQ---------------------------------------PLFALVLAPTRELAAQI 146
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A ++GG+ +Q L K PH++VATPGRL L H T+
Sbjct: 147 TQAFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRL-----LDHLEKTKGF 201
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YLV+DE DR+++ P L+ IL + PR+
Sbjct: 202 SLRNLKYLVMDEADRLLDMDFGPILEKILKFL-------PRE------------------ 236
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+TF+FSAT++ +++ ++ S DP K+
Sbjct: 237 --------RRTFLFSATMSSKVES----------LQRASLRDPL-------------KVS 265
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
+ K TL ++ + H KD+YL Y + G+T+
Sbjct: 266 ISSSKYQTVATLVQNYLFIPHMHKDTYLIYLCNEFAGQTI-------------------- 305
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
I T+T+ E+ +R+ LL L +
Sbjct: 306 -IIFTRTVLET----------------------------------QRIAILLRTLGMGAI 330
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLH ++Q RL L++FR + +IL+ATDVAARGLDIP ++ V+++ +P+ S+ Y+HR
Sbjct: 331 PLHGGLSQSARLGALNKFRAGSRNILVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRV 390
Query: 633 GRTARANNEGLTVVLIESDEI 653
GRTARA G + ++ +I
Sbjct: 391 GRTARAGKSGHAISIVTQYDI 411
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+LAPTRELA Q+ G ++ A ++GG+ +Q L K PH++VATPG L
Sbjct: 133 ALVLAPTRELAAQITQAFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRL- 191
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKAL 1474
L ++ K K + + D L DMD E +++ R L S +
Sbjct: 192 LDHLEKTKGFSLRNLKYLVMDEADRLL-----DMDFGPILEKILKFLPRERRTFLFSATM 246
Query: 1475 VSKRKELQ 1482
SK + LQ
Sbjct: 247 SSKVESLQ 254
>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
[Saccoglossus kowalevskii]
Length = 446
Score = 218 bits (554), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 149/463 (32%), Positives = 238/463 (51%), Gaps = 74/463 (15%)
Query: 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
A + + + + Q +K PTKIQ +P AL KD++G AETGSGKT AF +PI
Sbjct: 23 ATFKSLGLVDVLCETCEQLKWKEPTKIQRESIPLALEG-KDVIGLAETGSGKTGAFALPI 81
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L + LE+P +L+ALIL PTRE
Sbjct: 82 LQDL---LEHP------------------------------------QRLFALILTPTRE 102
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA Q+ G +K A VVGG+ Q L K PH++VATPGRL + ++ +
Sbjct: 103 LAFQISEQFEALGSAIGIKCAVVVGGIDMMSQALQLAKKPHVVVATPGRLVDHLE--NTK 160
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + YLV+DE DR++ EL IL + + R+T+++SAT+T
Sbjct: 161 GFNLRSVKYLVMDEADRILNMDFEIELDKILKVI-----PRERRTYLYSATMT------- 208
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
KKV+K ++R ++K+P V++ K + L + + KD
Sbjct: 209 ---------KKVAK----LQRA----SLKNPVKVEVNTKYQTVEKLLQYYLFIPSKYKDV 251
Query: 1068 YLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
YL Y + + G + +VFC++ ++ +R+ +L L + +PLH M+Q +RL L++F+ +
Sbjct: 252 YLVYILNELAGNSFMVFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNKFKGK 311
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+ SIL+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G + + ++
Sbjct: 312 DRSILIATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVTQYDV 371
Query: 1187 PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
LY ++ + K+ LP +P +E + ++ +R+ A+ +E
Sbjct: 372 ELYQRIEQLISKQ--LPLYPSEEEDVMMLVERVTEAQRYARME 412
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 141/505 (27%), Positives = 219/505 (43%), Gaps = 154/505 (30%)
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
A + + + + Q +K PTKIQ +P AL KD++G AETGSGKT AF +PI
Sbjct: 23 ATFKSLGLVDVLCETCEQLKWKEPTKIQRESIPLALEG-KDVIGLAETGSGKTGAFALPI 81
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L + LE+P +L+ALIL PTRE
Sbjct: 82 LQDL---LEHP------------------------------------QRLFALILTPTRE 102
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA Q+ G +K A VVGG+ Q L K PH++VATPGRL + ++ +
Sbjct: 103 LAFQISEQFEALGSAIGIKCAVVVGGIDMMSQALQLAKKPHVVVATPGRLVDHLE--NTK 160
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + YLV+DE DR++ EL IL + PR+
Sbjct: 161 GFNLRSVKYLVMDEADRILNMDFEIELDKILKVI-------PRE---------------- 197
Query: 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450
R+T+++SAT+T KKV+K ++R ++K+P
Sbjct: 198 ----------RRTYLYSATMT----------------KKVAK----LQR----ASLKNPV 223
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
V++ K + L + + KD YL Y + + G
Sbjct: 224 KVEVNTKYQTVEKLLQYYLFIPSKYKDVYLVYILNELAG--------------------- 262
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
+S++ + C++ ++ +R+ +L L +
Sbjct: 263 ----------------------NSFMVF------------CSTCNNTQRVALMLRNLGLT 288
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+PLH M+Q +RL L++F+ ++ SIL+ATDVA+RGLDIP ++ VI++ +P S+ YIH
Sbjct: 289 AVPLHGQMSQNKRLGMLNKFKGKDRSILIATDVASRGLDIPHVDIVINFDIPTHSKDYIH 348
Query: 631 RSGRTARANNEGLTVVLIESDEIPL 655
R GRTARA G + + ++ L
Sbjct: 349 RVGRTARAGKSGKAITFVTQYDVEL 373
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
ALIL PTRELA Q+ G +K A VVGG+ Q L K PH++VATPG L
Sbjct: 94 ALILTPTRELAFQISEQFEALGSAIGIKCAVVVGGIDMMSQALQLAKKPHVVVATPGRLV 153
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
+ K +L +S++YL + D L +MD I+ + +++ R L
Sbjct: 154 DHLENTKGFNL-RSVKYL----VMDEADRIL-----NMDFEIELDKILKVIPRERRTYLY 203
Query: 1471 SKALVSKRKELQ 1482
S + K +LQ
Sbjct: 204 SATMTKKVAKLQ 215
>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
Length = 490
Score = 218 bits (554), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 149/475 (31%), Positives = 237/475 (49%), Gaps = 81/475 (17%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
E T +NE+ + I +++ A + G+K PT IQ +P AL R DI+G A
Sbjct: 48 ESTTLDNENGEAAPKTFKDLGIVDSLCEACDRLGYKQPTAIQQEAIPLALQDR-DIIGIA 106
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
ETGSGKT AF +PIL +++K +
Sbjct: 107 ETGSGKTAAFALPILQALLDKPQ------------------------------------- 129
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
L+AL+LAPTRELA Q+ G ++ A ++GG+ +Q L K PH++VAT
Sbjct: 130 --PLFALVLAPTRELAAQIAQSFEALGSLINLRCALLLGGLDMVQQAIALGKKPHVVVAT 187
Query: 934 PGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
PGRL L H T+ L + Y V+DE DR+++ P L+ IL + + R
Sbjct: 188 PGRL-----LDHLEKTKGFSLRNLRYCVMDEADRLLDMDFGPILEKILKFL-----PRER 237
Query: 991 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL-TEKIGI 1049
+TF+FSAT++ ++ S++R +++ P V++ T K
Sbjct: 238 RTFLFSATMSSKVE--------------------SLQRA----SLRDPLKVNVSTSKYQT 273
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLH 1108
TL + + H KD+Y Y + G+T+ VF ++ +R+ LL L +PLH
Sbjct: 274 VSTLVSNYLFIPHIHKDTYFIYLCNEFAGKTMIVFTRTVLETQRIAILLRTLGMGAIPLH 333
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
++Q RL L +FR +IL+ATDVAARGLDIP ++ VI+Y +P+ S+ YIHR GRT
Sbjct: 334 GGLSQSARLGALSKFRAGTRNILVATDVAARGLDIPNVDCVINYDLPQDSKTYIHRVGRT 393
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
ARA G L ++ ++ ++ ++ +L K L ++ ++ + + K R++ A+
Sbjct: 394 ARAGKSGHALSIVTQYDLEIWTRIEAALGTK--LTEYAYEKDEVMVFKPRVEEAQ 446
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 156/565 (27%), Positives = 238/565 (42%), Gaps = 172/565 (30%)
Query: 110 SDEPSSKKLKQKKKKKQTYT-----------SANKELLEVDTSNNEDMFVQMAEWVKFNI 158
SD PS+ K K+ + K T S + E T +NE+ + I
Sbjct: 10 SDNPSAVKKKKTEAPKPKITPGPEPRIEDAVSEASDAEESTTLDNENGEAAPKTFKDLGI 69
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
+++ A + G+K PT IQ +P AL R DI+G AETGSGKT AF +PIL +++K
Sbjct: 70 VDSLCEACDRLGYKQPTAIQQEAIPLALQDR-DIIGIAETGSGKTAAFALPILQALLDKP 128
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
+ L+AL+LAPTRELA Q+
Sbjct: 129 Q---------------------------------------PLFALVLAPTRELAAQIAQS 149
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LY 335
G ++ A ++GG+ +Q L K PH++VATPGRL L H T+ L
Sbjct: 150 FEALGSLINLRCALLLGGLDMVQQAIALGKKPHVVVATPGRL-----LDHLEKTKGFSLR 204
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ Y V+DE DR+++ P L+ IL + PR+
Sbjct: 205 NLRYCVMDEADRLLDMDFGPILEKILKFL-------PRE--------------------- 236
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL- 454
R+TF+FSAT++ ++ S++R +++ P V++
Sbjct: 237 -----RRTFLFSATMSSKVE--------------------SLQR----ASLRDPLKVNVS 267
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
T K TL + + H KD+Y Y + G+T+ I
Sbjct: 268 TSKYQTVSTLVSNYLFIPHIHKDTYFIYLCNEFAGKTM---------------------I 306
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
T+T+ E+ +R+ LL L +PL
Sbjct: 307 VFTRTVLET----------------------------------QRIAILLRTLGMGAIPL 332
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H ++Q RL L +FR +IL+ATDVAARGLDIP ++ VI+Y +P+ S+ YIHR GR
Sbjct: 333 HGGLSQSARLGALSKFRAGTRNILVATDVAARGLDIPNVDCVINYDLPQDSKTYIHRVGR 392
Query: 635 TARANNEGLTVVLIESDEIPLKTKF 659
TARA G + ++ ++ + T+
Sbjct: 393 TARAGKSGHALSIVTQYDLEIWTRI 417
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+LAPTRELA Q+ G ++ A ++GG+ +Q L K PH++VATPG L
Sbjct: 133 ALVLAPTRELAAQIAQSFEALGSLINLRCALLLGGLDMVQQAIALGKKPHVVVATPGRL 191
>gi|336373869|gb|EGO02207.1| hypothetical protein SERLA73DRAFT_178026 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386778|gb|EGO27924.1| hypothetical protein SERLADRAFT_462194 [Serpula lacrymans var.
lacrymans S7.9]
Length = 449
Score = 218 bits (554), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 232/460 (50%), Gaps = 76/460 (16%)
Query: 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
A + + +++++AL Q K PT IQ+ V+P AL KDI+G A TGSGKT AF +PI
Sbjct: 15 ATFKSLGLIDSLLQALEQVNHKVPTDIQTEVIPHALEG-KDIIGVASTGSGKTAAFALPI 73
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L ++L EE L+A +LAPTRE
Sbjct: 74 L----------------------------QKLWEEPKG-----------LFACVLAPTRE 94
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLGHF 946
LA Q+ G V+ A +VGG+ T Q L K PH++VATPGRL W + F
Sbjct: 95 LAYQISQQFESLGSDMGVRCAVIVGGVPTVPQAVALAKKPHVVVATPGRLLWHLQETKGF 154
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
L L +LV+DE DR+++ + ++D + Q R T++FSAT+T
Sbjct: 155 GLANL---KFLVLDEADRLLDM----DFGQVIDDILKVIPKQ-RTTYLFSATMT------ 200
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
SK K+ + ++K+P V++ K TL + + +KD
Sbjct: 201 -------SKVAKLQRA-----------SLKNPVRVEVAGKYQTVSTLLQYYLFIPLKDKD 242
Query: 1067 SYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
L Y + ++F ++ RLT +L L S +PLH ++Q QRL L +F+
Sbjct: 243 VNLVYLVNALAQNSIIIFTRTVHDAARLTIVLRTLGFSAVPLHGQLSQSQRLGALAKFKS 302
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
IL+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ L+ +
Sbjct: 303 GGRKILVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYD 362
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
+ L ++ + +EKK++L +P ++ ++L+ +R++ A I
Sbjct: 363 VELVQRIESVIEKKMEL--WPTEKEEIALLTERVNEAGRI 400
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 145/506 (28%), Positives = 212/506 (41%), Gaps = 156/506 (30%)
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
A + + +++++AL Q K PT IQ+ V+P AL KDI+G A TGSGKT AF +PI
Sbjct: 15 ATFKSLGLIDSLLQALEQVNHKVPTDIQTEVIPHALEG-KDIIGVASTGSGKTAAFALPI 73
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L ++L EE L+A +LAPTRE
Sbjct: 74 L----------------------------QKLWEEPKG-----------LFACVLAPTRE 94
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR-LWEFIQLGHF 329
LA Q+ G V+ A +VGG+ T Q L K PH++VATPGR LW + F
Sbjct: 95 LAYQISQQFESLGSDMGVRCAVIVGGVPTVPQAVALAKKPHVVVATPGRLLWHLQETKGF 154
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
L L +LV+DE DR+++ + +IL + P+Q
Sbjct: 155 GLANL---KFLVLDEADRLLDMDFGQVIDDILKVI-------PKQ--------------- 189
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
R T++FSAT+T SK K+ + ++K+P
Sbjct: 190 -----------RTTYLFSATMT-------------SKVAKLQRA-----------SLKNP 214
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
V++ K TL + + +KD L Y + L +
Sbjct: 215 VRVEVAGKYQTVSTLLQYYLFIPLKDKDVNLVYLV-----NALAQ--------------- 254
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
S I+ D+ +L RTL F
Sbjct: 255 ------------NSIIIFTRTVHDAARLTIVL----RTLGF------------------- 279
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
S +PLH ++Q QRL L +F+ IL+ATDVA+RGLDIP ++ VI++ +P S+ YI
Sbjct: 280 SAVPLHGQLSQSQRLGALAKFKSGGRKILVATDVASRGLDIPSVDIVINFDIPTHSKDYI 339
Query: 630 HRSGRTARANNEGLTVVLIESDEIPL 655
HR GRTARA G ++ L+ ++ L
Sbjct: 340 HRVGRTARAGRSGKSITLVTQYDVEL 365
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A +LAPTRELA Q+ G V+ A +VGG+ T Q L K PH++VATPG L
Sbjct: 86 ACVLAPTRELAYQISQQFESLGSDMGVRCAVIVGGVPTVPQAVALAKKPHVVVATPGRL- 144
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDI--IIDDENLIQPKANSRENALMSK 1472
L + K K + + D L DMD +IDD + PK R L S
Sbjct: 145 LWHLQETKGFGLANLKFLVLDEADRLL-----DMDFGQVIDDILKVIPK--QRTTYLFSA 197
Query: 1473 ALVSKRKELQ 1482
+ SK +LQ
Sbjct: 198 TMTSKVAKLQ 207
Score = 40.8 bits (94), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ ++ L ++ + +EKK++L +P ++ ++L+ +R+
Sbjct: 337 DYIHRVGRTARAGRSGKSITLVTQYDVELVQRIESVIEKKMEL--WPTEKEEIALLTERV 394
Query: 1299 DLAKSI 1304
+ A I
Sbjct: 395 NEAGRI 400
>gi|161784286|sp|Q5ACU6.2|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 539
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 144/453 (31%), Positives = 230/453 (50%), Gaps = 73/453 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
N+ ++ ++ F PT IQS +P AL KDI+G A+TGSGKT AF IPIL +
Sbjct: 128 LNLVPDLLESIESMKFTKPTPIQSEAIPHALEG-KDIIGLAQTGSGKTAAFAIPILQSLW 186
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ + +AL+LAPTREL Q+
Sbjct: 187 H---------------------------------------AQQPYFALVLAPTRELTFQI 207
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
++ G ++ +C+VGGM Q R L + PH++VATPGR+ + L H L
Sbjct: 208 KDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMD--HLEHTKGFSLK 265
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ YLV+DE DR+++ P L IL + + R T++FSAT+T+
Sbjct: 266 NLKYLVMDEADRLLDMDFGPALDKILKVIPIK-----RTTYLFSATMTNK---------- 310
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
I++LQ ++ +P V ++ K L +S +L K++ L +
Sbjct: 311 -------------IEKLQRA-SLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHL 356
Query: 1073 ILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G+++ VF +++ +R L +L + +PLH ++Q QRL +L++F+ +IL
Sbjct: 357 LNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANIL 416
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ LI ++ +Y++
Sbjct: 417 VATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLR 476
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
+ + L KK+ D P E VL + +D A +
Sbjct: 477 IESVLGKKLPKEDKPPKE-VLDALHVHVDKATA 508
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 135/493 (27%), Positives = 211/493 (42%), Gaps = 154/493 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
N+ ++ ++ F PT IQS +P AL KDI+G A+TGSGKT AF IPIL +
Sbjct: 128 LNLVPDLLESIESMKFTKPTPIQSEAIPHALEG-KDIIGLAQTGSGKTAAFAIPILQSLW 186
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ + +AL+LAPTREL Q+
Sbjct: 187 H---------------------------------------AQQPYFALVLAPTRELTFQI 207
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
++ G ++ +C+VGGM Q R L + PH++VATPGR+ + L H L
Sbjct: 208 KDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMD--HLEHTKGFSLK 265
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ P L IL + +
Sbjct: 266 NLKYLVMDEADRLLDMDFGPALDKILKVIPIK---------------------------- 297
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R T++FSAT+T+ I++LQ ++ +P V ++
Sbjct: 298 -----RTTYLFSATMTN-----------------------KIEKLQR-ASLHNPVRVAVS 328
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K L +S +L K++ L + + + G+++ I
Sbjct: 329 SKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSI---------------------IV 367
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
T+T+ H ++ + L R L F N++ +L+Q
Sbjct: 368 FTRTVA-------HAQRTALL--------ARILGF-NAVPLHGQLSQ------------- 398
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
+QR L +L++F+ +IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRT
Sbjct: 399 ---SQR--LGSLNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRT 453
Query: 636 ARANNEGLTVVLI 648
ARA G ++ LI
Sbjct: 454 ARAGRSGKSISLI 466
Score = 60.5 bits (145), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+ AL+LAPTREL Q+++ G ++ +C+VGGM Q R L + PH++VATPG
Sbjct: 192 YFALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPG 250
>gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74654514|sp|Q9P6N8.1|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3
gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe]
Length = 465
Score = 217 bits (553), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 144/470 (30%), Positives = 235/470 (50%), Gaps = 80/470 (17%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
D+ NNE + + + + + A + GFKTPT IQ +P +L ++D++G A+T
Sbjct: 38 DSQNNE----APKTFKELGVIDELCEACEKLGFKTPTPIQQEAIP-VVLNKRDVIGLAQT 92
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF +P++ + N NP+
Sbjct: 93 GSGKTAAFALPVIQELWN---NPSP----------------------------------- 114
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
+A++LAPTRELA Q+ G V+ +VGGM Q L+K PH+LV TPG
Sbjct: 115 -FFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPG 173
Query: 936 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFV 994
RL + ++ F L L YL++DE DR+++ P + IL + R+T +
Sbjct: 174 RLMDHLENTKGFSLKNL---KYLIMDEADRLLDMDFGPIIDKILKII-----PHERRTLL 225
Query: 995 FSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 1054
FSAT+T SK +K+ + ++ P V ++ K TL
Sbjct: 226 FSATMT-------------SKVEKLQRA-----------SLHQPVRVAVSSKFSTVDTLI 261
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
+ + KD+YL Y + + G +++ F +++ +RL LL L S +PLH ++Q
Sbjct: 262 QRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQ 321
Query: 1114 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
RL L++F+ S L+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA
Sbjct: 322 SNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGR 381
Query: 1174 EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
G ++ L+ ++ ++++ ++ KK + ++ ID+ + L+ +R+ A+
Sbjct: 382 AGKSIALVTQYDLEPFLRIEATIGKK--MQEYEIDKEGVFLLSERVGEAQ 429
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 151/550 (27%), Positives = 230/550 (41%), Gaps = 177/550 (32%)
Query: 113 PSSKKLKQKKKKKQTYTSANKEL-------------LEVDTSNNEDMFVQMAEWVKFNIP 159
PS KKL + KK +S NK++ D+ NNE + + +
Sbjct: 3 PSEKKLTEDKKN----SSLNKKIETSNSSSEKSSENNNGDSQNNE----APKTFKELGVI 54
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+ + A + GFKTPT IQ +P +L ++D++G A+TGSGKT AF +P++ + N
Sbjct: 55 DELCEACEKLGFKTPTPIQQEAIP-VVLNKRDVIGLAQTGSGKTAAFALPVIQELWN--- 110
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
NP+ +A++LAPTRELA Q+
Sbjct: 111 NPSP------------------------------------FFAVVLAPTRELAYQISEQF 134
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKIN 338
G V+ +VGGM Q L+K PH+LV TPGRL + ++ F L L
Sbjct: 135 EAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNL---K 191
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS 398
YL++DE DR+++ P I+D++ LK I
Sbjct: 192 YLIMDEADRLLDMDFGP----IIDKI--------------------LKII---------P 218
Query: 399 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458
R+T +FSAT+T SK +K+ + ++ P V ++ K
Sbjct: 219 HERRTLLFSATMT-------------SKVEKLQRA-----------SLHQPVRVAVSSKF 254
Query: 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITK 518
TL + + KD+YL Y + + G ++ I + V+ T+++ I
Sbjct: 255 STVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSI---------IIFARTVNDTQRLAI-- 303
Query: 519 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 578
LL L S +PLH +
Sbjct: 304 --------------------------------------------LLRTLGFSAIPLHGQL 319
Query: 579 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638
+Q RL L++F+ S L+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA
Sbjct: 320 SQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARA 379
Query: 639 NNEGLTVVLI 648
G ++ L+
Sbjct: 380 GRAGKSIALV 389
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A++LAPTRELA Q+ G V+ +VGGM Q L+K PH+LV TPG
Sbjct: 115 FFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGR 174
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI--IIDDENLIQPKANSRE 1466
L + K L K+++YL + D L DMD IID I P + R
Sbjct: 175 LMDHLENTKGFSL-KNLKYL----IMDEADRLL-----DMDFGPIIDKILKIIP--HERR 222
Query: 1467 NALMSKALVSKRKELQ 1482
L S + SK ++LQ
Sbjct: 223 TLLFSATMTSKVEKLQ 238
>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 453
Score = 217 bits (553), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 148/469 (31%), Positives = 233/469 (49%), Gaps = 84/469 (17%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+ ++ AL Q G+KTPT IQ +P AL R DI+G A TGSGKT AF +PIL + E
Sbjct: 26 DPLLEALEQVGYKTPTDIQVESLPHALEGR-DIIGVASTGSGKTAAFALPILQKL---WE 81
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
+P L+A +LAPTRELA Q+
Sbjct: 82 DP------------------------------------KGLFACVLAPTRELAYQISQQF 105
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-----L 951
G + A +VGGM Q L K PHI+VATPGRL + HL E L
Sbjct: 106 ESLGSAMGARCAVIVGGMDMPAQAIALAKRPHIVVATPGRLMQ-------HLEETKGFSL 158
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
I +LV+DE DR+++ + IL + + R T++FSAT+T
Sbjct: 159 RSIKFLVLDEADRLLDLDFGASIDKILKVI-----PKERTTYLFSATMT----------- 202
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
+K K+ + ++ +P ++++ K TL + +L +KD+YL Y
Sbjct: 203 --TKVAKLQRA-----------SLSNPVRIEVSSKYQTVSTLLQYYLLMPLKDKDAYLIY 249
Query: 1072 FILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
I +++ F ++ +RL+ +L L +PLH ++Q QRL L +F+ +
Sbjct: 250 LINSLAQNSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRRV 309
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 310 LVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQ 369
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN 1239
++ + KK++L +P D ++L+K+R+ A + E + + ++ +N
Sbjct: 370 RIEQVVGKKMEL--WPTDPEEIALLKERVSEAARLAATELREQGSKSNN 416
Score = 171 bits (432), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 212/501 (42%), Gaps = 164/501 (32%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+ ++ AL Q G+KTPT IQ +P AL R DI+G A TGSGKT AF +PIL + E
Sbjct: 26 DPLLEALEQVGYKTPTDIQVESLPHALEGR-DIIGVASTGSGKTAAFALPILQKL---WE 81
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
+P L+A +LAPTRELA Q+
Sbjct: 82 DP------------------------------------KGLFACVLAPTRELAYQISQQF 105
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-----L 334
G + A +VGGM Q L K PHI+VATPGRL + HL E L
Sbjct: 106 ESLGSAMGARCAVIVGGMDMPAQAIALAKRPHIVVATPGRLMQ-------HLEETKGFSL 158
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
I +LV+DE DR+++ + IL + P++
Sbjct: 159 RSIKFLVLDEADRLLDLDFGASIDKILKVI-------PKE-------------------- 191
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R T++FSAT+T +K K+ + ++ +P +++
Sbjct: 192 ------RTTYLFSATMT-------------TKVAKLQRA-----------SLSNPVRIEV 221
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K TL + +L +KD+YL Y I +L + I
Sbjct: 222 SSKYQTVSTLLQYYLLMPLKDKDAYLIYLI-----NSLAQN----------------SII 260
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
T+T+ +++ L IL RTL F +PL
Sbjct: 261 MFTRTVHDAQRLS-----------IIL----RTLGF-------------------PAVPL 286
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H ++Q QRL L +F+ +L+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GR
Sbjct: 287 HGQLSQSQRLGALGKFKSGGRRVLVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGR 346
Query: 635 TARANNEGLTVVLIESDEIPL 655
TARA G ++ L+ ++ L
Sbjct: 347 TARAGRAGKSITLVTQYDVEL 367
Score = 56.6 bits (135), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A +LAPTRELA Q+ G + A +VGGM Q L K PHI+VATPG L
Sbjct: 88 ACVLAPTRELAYQISQQFESLGSAMGARCAVIVGGMDMPAQAIALAKRPHIVVATPGRL 146
Score = 41.6 bits (96), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ ++ L ++ + KK++L +P D ++L+K+R+
Sbjct: 339 DYIHRVGRTARAGRAGKSITLVTQYDVELVQRIEQVVGKKMEL--WPTDPEEIALLKERV 396
Query: 1299 DLAKSIEYLESKIKKNRPDN 1318
A + E + + ++ +N
Sbjct: 397 SEAARLAATELREQGSKSNN 416
>gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
Length = 435
Score = 217 bits (553), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 229/452 (50%), Gaps = 72/452 (15%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
D ED + + N+ +++ ++ + PT+IQ+ +P AL R D++G AET
Sbjct: 27 DNQETEDGIITSKSFSSLNLHPSLLSSIASLQWTNPTQIQAASIPPALEGR-DVIGLAET 85
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT +F IPIL + LE P +
Sbjct: 86 GSGKTGSFAIPILNYL---LEKP-----------------------------------QK 107
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
+++A+ILAPTRELA Q+ ++ G+ CVVGG+ Q L + PH++VATPG
Sbjct: 108 QVFAVILAPTRELAFQIHEVMVALGRGMGANSVCVVGGVDMASQAIALARNPHVVVATPG 167
Query: 936 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFV 994
RL + +Q FHL + I YLV+DE DRM+ E+ IL+ + + + R+T +
Sbjct: 168 RLLDHLQNTKGFHLRQ---IKYLVMDEADRMLSMDFEKEINEILE--VIPDCEKGRRTML 222
Query: 995 FSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 1054
FSAT+T SK +K+ + ++ P V+++ K K L
Sbjct: 223 FSATMT-------------SKVEKLQRA-----------SLVDPVRVEVSTKFQTPKKLL 258
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
++ + KD YL Y I +H G++ LVF + ++V+RL +L L + LH M+Q
Sbjct: 259 QNYLFIPAKYKDCYLTYLINEHAGQSILVFGATCNNVQRLALMLRNLGFPAICLHGQMSQ 318
Query: 1114 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
+RL L +F+ IL+ TDVA+RGLDIP ++ VI++ +P + YIHR GRTARA
Sbjct: 319 PKRLGALTKFKSGGRDILICTDVASRGLDIPSVDVVINFDLPGHGKDYIHRVGRTARAGR 378
Query: 1174 EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
G + ++ ++ +Y ++ + L + LP++
Sbjct: 379 SGKAIAMVTQYDVEVYQRLEHLLGHR--LPEY 408
Score = 162 bits (409), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/521 (26%), Positives = 211/521 (40%), Gaps = 172/521 (33%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
D ED + + N+ +++ ++ + PT+IQ+ +P AL R D++G AET
Sbjct: 27 DNQETEDGIITSKSFSSLNLHPSLLSSIASLQWTNPTQIQAASIPPALEGR-DVIGLAET 85
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT +F IPIL + LE P +
Sbjct: 86 GSGKTGSFAIPILNYL---LEKP-----------------------------------QK 107
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
+++A+ILAPTRELA Q+ ++ G+ CVVGG+ Q L + PH++VATPG
Sbjct: 108 QVFAVILAPTRELAFQIHEVMVALGRGMGANSVCVVGGVDMASQAIALARNPHVVVATPG 167
Query: 319 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
RL + +Q FHL + I YLV+DE DRM+ E+ IL+
Sbjct: 168 RLLDHLQNTKGFHLRQ---IKYLVMDEADRMLSMDFEKEINEILE--------------- 209
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
+ + + R+T +FSAT+T SK +K+ +
Sbjct: 210 ---------------VIPDCEKGRRTMLFSATMT-------------SKVEKLQRA---- 237
Query: 438 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL----- 492
++ P V+++ K K L ++ + KD YL Y I +H G+++
Sbjct: 238 -------SLVDPVRVEVSTKFQTPKKLLQNYLFIPAKYKDCYLTYLINEHAGQSILVFGA 290
Query: 493 -CEEIQDLL----NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547
C +Q L N+ P I C H +
Sbjct: 291 TCNNVQRLALMLRNLGFPAI-------------------CLHGQ---------------- 315
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
+S KRL L +F+ IL+ TDVA+RG
Sbjct: 316 ------MSQPKRLGAL------------------------TKFKSGGRDILICTDVASRG 345
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
LDIP ++ VI++ +P + YIHR GRTARA G + ++
Sbjct: 346 LDIPSVDVVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMV 386
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A+ILAPTRELA Q+ ++ G+ CVVGG+ Q L + PH++VATPG L
Sbjct: 111 AVILAPTRELAFQIHEVMVALGRGMGANSVCVVGGVDMASQAIALARNPHVVVATPGRL 169
>gi|440475921|gb|ELQ44569.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae Y34]
Length = 906
Score = 217 bits (552), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 224/463 (48%), Gaps = 93/463 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I E + A FK PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 115 LGIVEPLCEACEALKFKKPTPIQEQAIPLALQGR-DVIGIAETGSGKTAAFALPILQSL- 172
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P L+ L+LAPTRELA Q+
Sbjct: 173 --LEKP------------------------------------QPLFGLVLAPTRELAAQI 194
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A VVGG+ Q L K PHI+VATPGRL L H T+
Sbjct: 195 GQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPHIVVATPGRL-----LDHLEKTKGF 249
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH-------- 1001
L + +LV+DE DR+++ P L IL + + R+TF+FSAT++
Sbjct: 250 SLRSLKFLVMDEADRLLDLDFGPILDKILKFL-----PRERRTFLFSATMSSKVESLQRA 304
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
SL++ L + S+ K VS TL ++ +
Sbjct: 305 SLRDPLKVSVSSSQEKTVS-------------------------------TLIQNPLFIP 333
Query: 1062 HDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
H KD YL Y + G+T +VF +++ +R++ LL L +PLH ++Q RL L
Sbjct: 334 HKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGAL 393
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
++F+ ++ IL+ATDVAARGLDIP ++ VI++ +P+ S YIHR GRTARA G + +
Sbjct: 394 NKFKARSRDILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISI 453
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
I ++ L++++ + LP F D+ + + K+R++ A+
Sbjct: 454 ITQYDLELWLRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQ 496
Score = 176 bits (446), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 147/504 (29%), Positives = 205/504 (40%), Gaps = 175/504 (34%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I E + A FK PT IQ +P AL R D++G AETGSGKT AF +PIL +
Sbjct: 115 LGIVEPLCEACEALKFKKPTPIQEQAIPLALQGR-DVIGIAETGSGKTAAFALPILQSL- 172
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P L+ L+LAPTRELA Q+
Sbjct: 173 --LEKP------------------------------------QPLFGLVLAPTRELAAQI 194
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A VVGG+ Q L K PHI+VATPGRL L H T+
Sbjct: 195 GQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPHIVVATPGRL-----LDHLEKTKGF 249
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + +LV+DE DR+++ P L IL + PR+
Sbjct: 250 SLRSLKFLVMDEADRLLDLDFGPILDKILKFL-------PRE------------------ 284
Query: 393 TMTETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
R+TF+FSAT++ SL++ L + S+ K VS
Sbjct: 285 --------RRTFLFSATMSSKVESLQRASLRDPLKVSVSSSQEKTVS------------- 323
Query: 445 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
TL ++ + H KD YL Y + G+T
Sbjct: 324 ------------------TLIQNPLFIPHKHKDVYLIYLANEFAGKT------------- 352
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
I T+T+ E+ +R++ LL
Sbjct: 353 --------TIVFTRTVNEA----------------------------------QRVSILL 370
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L +PLH ++Q RL L++F+ ++ IL+ATDVAARGLDIP ++ VI++ +P+
Sbjct: 371 RTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVINFDMPQD 430
Query: 625 SEIYIHRSGRTARANNEGLTVVLI 648
S YIHR GRTARA G + +I
Sbjct: 431 SMTYIHRVGRTARAGRSGRAISII 454
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G ++ A VVGG+ Q L K PHI+VATPG L
Sbjct: 181 GLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPHIVVATPGRL 239
>gi|320164743|gb|EFW41642.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
30864]
Length = 594
Score = 217 bits (552), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 228/449 (50%), Gaps = 77/449 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ I +++ A + GFK PT IQ +P AL R DI+G AETGSGKT +F +P+L
Sbjct: 148 FQALGIVPSLVEACSRMGFKAPTPIQRQSIPVALTGR-DIIGLAETGSGKTASFALPVLQ 206
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LE P L+ALIL PTRELA
Sbjct: 207 KL---LEKP------------------------------------QPLFALILTPTRELA 227
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ G VK +VGGM Q L+K PHIL+ATPGR+ + H T
Sbjct: 228 YQISEQFEALGSTIGVKCCVIVGGMDMTTQAIALSKKPHILIATPGRIVD-----HLENT 282
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ Y + +L++DE DR++ E+ IL + + R T+++SAT+T
Sbjct: 283 KGY-LKFLIMDEADRILNMDFEEEVDKILKAI-----PKERNTYLYSATMT--------- 327
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
SK K+ + ++++P +++ K TL + + KD YL
Sbjct: 328 ----SKVAKLQRA-----------SLRNPVKIEVATKYQTVGTLVQQYLFIPARFKDCYL 372
Query: 1070 YYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + Q G T++F + ++ +R+ +L L +PLH + Q +RL L++F++Q+
Sbjct: 373 TYALNQLAGNSTIIFTMTCANAQRVALMLRNLGFPAIPLHGQLTQPKRLGALNKFKEQSR 432
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
SIL+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ ++ ++ L
Sbjct: 433 SILVATDVASRGLDIPHVDLVINYDIPTHSKDYIHRVGRTARAGRSGRSITMVTQYDVEL 492
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217
+ ++ + KK++L + +E VL L+++
Sbjct: 493 FQRIEQLINKKMELYESE-EEQVLMLLER 520
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 146/527 (27%), Positives = 226/527 (42%), Gaps = 161/527 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ I +++ A + GFK PT IQ +P AL R DI+G AETGSGKT +F +P+L
Sbjct: 148 FQALGIVPSLVEACSRMGFKAPTPIQRQSIPVALTGR-DIIGLAETGSGKTASFALPVLQ 206
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LE P L+ALIL PTRELA
Sbjct: 207 KL---LEKP------------------------------------QPLFALILTPTRELA 227
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ G VK +VGGM Q L+K PHIL+ATPGR+ + H T
Sbjct: 228 YQISEQFEALGSTIGVKCCVIVGGMDMTTQAIALSKKPHILIATPGRIVD-----HLENT 282
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ Y + +L++DE DR++ E+ IL + P++
Sbjct: 283 KGY-LKFLIMDEADRILNMDFEEEVDKILKAI-------PKE------------------ 316
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R T+++SAT+T SK K+ + ++++P +
Sbjct: 317 --------RNTYLYSATMT-------------SKVAKLQRA-----------SLRNPVKI 344
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
++ K TL + + KD YL Y + Q G +
Sbjct: 345 EVATKYQTVGTLVQQYLFIPARFKDCYLTYALNQLAGNST-------------------- 384
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
I T+T C + ++ + + R L F +
Sbjct: 385 ---IIFTMT-----CANAQRVALML--------RNLGF-------------------PAI 409
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLH + Q +RL L++F++Q+ SIL+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR
Sbjct: 410 PLHGQLTQPKRLGALNKFKEQSRSILVATDVASRGLDIPHVDLVINYDIPTHSKDYIHRV 469
Query: 633 GRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEK 679
GRTARA G ++ ++ ++ L F E+ N++ E E+++E+
Sbjct: 470 GRTARAGRSGRSITMVTQYDVEL---FQRIEQLINKKMELYESEEEQ 513
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL PTRELA Q+ G VK +VGGM Q L+K PHIL+ATPG
Sbjct: 217 ALILTPTRELAYQISEQFEALGSTIGVKCCVIVGGMDMTTQAIALSKKPHILIATPG 273
>gi|296824198|ref|XP_002850600.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
gi|238838154|gb|EEQ27816.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
Length = 474
Score = 216 bits (551), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 151/468 (32%), Positives = 229/468 (48%), Gaps = 89/468 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I +++ A +K PT IQ+ +P AL R D+VG AETGSGKT AF +PIL +
Sbjct: 54 LGIIDSLCDACTSLRYKAPTPIQAESIPLALQGR-DLVGLAETGSGKTAAFALPILQAL- 111
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+E P + L+LAPTRELA+Q+
Sbjct: 112 --MEKP------------------------------------QPYFGLVLAPTRELAVQI 133
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 134 SEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE--NTKGFSLR 191
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLK 1004
+ YLV+DE DR+++ P L IL +V E R+T++FSATL+ SL
Sbjct: 192 NLKYLVMDEADRLLDLDFGPVLDKIL-KVLPRE----RRTYLFSATLSSKVESLQRASLS 246
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
N L + +K + VS TL +S I H
Sbjct: 247 NPLRVSISSNKYQTVS-------------------------------TLLQSYIFIPHKY 275
Query: 1065 KDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD YL + + + PG+ T++F +++ +RL LL L +PLH ++Q RL L +F
Sbjct: 276 KDVYLVHILNEFPGQSTIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKF 335
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
R + +IL+ATDVAARGLDIP ++ V+++ +P S+ YIHR GRTARA G + ++
Sbjct: 336 RSGSRNILVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGRSGRAISIVTQ 395
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
E+ ++ ++ +L K+ LP+ ++ + ++ R+ A+ + E K
Sbjct: 396 YEVEIWQRIEVALGKQ--LPEHKTEKEEVMVLSDRVGDAQRMAVTEMK 441
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 153/556 (27%), Positives = 226/556 (40%), Gaps = 173/556 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I +++ A +K PT IQ+ +P AL R D+VG AETGSGKT AF +PIL +
Sbjct: 54 LGIIDSLCDACTSLRYKAPTPIQAESIPLALQGR-DLVGLAETGSGKTAAFALPILQAL- 111
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+E P + L+LAPTRELA+Q+
Sbjct: 112 --MEKP------------------------------------QPYFGLVLAPTRELAVQI 133
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 134 SEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE--NTKGFSLR 191
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ P L IL + PR+
Sbjct: 192 NLKYLVMDEADRLLDLDFGPVLDKILKVL-------PRE--------------------- 223
Query: 396 ETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+T++FSATL+ SL N L + +K + VS
Sbjct: 224 -----RRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVS---------------- 262
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
TL +S I H KD YL + + + PG++
Sbjct: 263 ---------------TLLQSYIFIPHKYKDVYLVHILNEFPGQS---------------- 291
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
I T+T+ E+ +RL LL L
Sbjct: 292 -----TIIFTRTVNET----------------------------------QRLAILLRAL 312
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+PLH ++Q RL L +FR + +IL+ATDVAARGLDIP ++ V+++ +P S+
Sbjct: 313 GFGAIPLHGQLSQSARLGALGKFRSGSRNILVATDVAARGLDIPAVDLVLNFDLPSDSKT 372
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL----QEEENNEEEERAEADKEKTEDI 683
YIHR GRTARA G + ++ E+ + + + Q E+ E+E ++ D
Sbjct: 373 YIHRVGRTARAGRSGRAISIVTQYEVEIWQRIEVALGKQLPEHKTEKEEVMVLSDRVGDA 432
Query: 684 NVTVSSKKKKLKRKQN 699
++ K L K+
Sbjct: 433 QRMAVTEMKDLHEKRG 448
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ L+LAPTRELA+Q+ G V+ A +VGGM Q L K PHI+VATPG
Sbjct: 118 YFGLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGR 177
Query: 1414 L 1414
L
Sbjct: 178 L 178
>gi|443893885|dbj|GAC71341.1| ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 562
Score = 216 bits (551), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 231/448 (51%), Gaps = 77/448 (17%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
IP+ II A GF+ PT IQ +P AL AR D++G A+TGSGKT AF IPIL +
Sbjct: 123 IPQ-IIEACTNMGFQHPTPIQVKAIPEALQAR-DVIGLAQTGSGKTAAFTIPILQAL--- 177
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+NP +A +LAPTRELA Q+
Sbjct: 178 WDNP------------------------------------KPFFACVLAPTRELAYQISQ 201
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
+ G V+ A +VGGM Q L+K PH++VATPGRL + ++ + L +
Sbjct: 202 QVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQDHLE--NTKGFSLRGL 259
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
YLV+DE DR+++ P I+D++ + + R+T +FSAT+T
Sbjct: 260 QYLVMDEADRLLDMDFGP----IIDKL-LQSIPRERRTMLFSATMT-------------- 300
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
KV+K ++R ++K+P V++ K TL + + KD+YL +
Sbjct: 301 --TKVAK----LQRA----SLKNPVRVEVDTKYTTVSTLKQHYLFMPFAHKDTYLVHLAN 350
Query: 1075 QHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+ G ++ VF ++ +RL+ LL +L +PLH ++Q+ RL L++F+ SIL+A
Sbjct: 351 EQAGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVA 410
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVA+RGLDIP ++ V++Y +P S+ YIHR GRTARA G ++ L+ ++ L ++
Sbjct: 411 TDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRIE 470
Query: 1194 NSLEKKVDLPDFPI--DESVLSLIKKRI 1219
+ K + +FP D+ + L+ +R+
Sbjct: 471 AVIALK--MTEFPGGNDKEAVMLLSERV 496
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 145/498 (29%), Positives = 218/498 (43%), Gaps = 155/498 (31%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
IP+ II A GF+ PT IQ +P AL AR D++G A+TGSGKT AF IPIL +
Sbjct: 123 IPQ-IIEACTNMGFQHPTPIQVKAIPEALQAR-DVIGLAQTGSGKTAAFTIPILQAL--- 177
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+NP +A +LAPTRELA Q+
Sbjct: 178 WDNP------------------------------------KPFFACVLAPTRELAYQISQ 201
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
+ G V+ A +VGGM Q L+K PH++VATPGRL + ++ + L +
Sbjct: 202 QVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQDHLE--NTKGFSLRGL 259
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
YLV+DE DR+++ P + +L + PR+
Sbjct: 260 QYLVMDEADRLLDMDFGPIIDKLLQSI-------PRE----------------------- 289
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
R+T +FSAT+T KV+K ++R ++K+P V++ K
Sbjct: 290 ---RRTMLFSATMT----------------TKVAK----LQR----ASLKNPVRVEVDTK 322
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
TL + + KD+YL + + G ++ I T
Sbjct: 323 YTTVSTLKQHYLFMPFAHKDTYLVHLANEQAGHSI---------------------IVFT 361
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+T+ +S +RL+ LL +L +PLH
Sbjct: 362 RTVHDS----------------------------------QRLSILLRLLGFPAIPLHGQ 387
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
++Q+ RL L++F+ SIL+ATDVA+RGLDIP ++ V++Y +P S+ YIHR GRTAR
Sbjct: 388 LSQQARLGALNKFKTGGRSILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTAR 447
Query: 638 ANNEGLTVVLIESDEIPL 655
A G +V L+ ++ L
Sbjct: 448 AGRSGRSVTLVTQYDVEL 465
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 25/146 (17%)
Query: 1350 LRYSWD------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
L+ WD A +LAPTRELA Q+ + G V+ A +VGGM Q L+K
Sbjct: 174 LQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKR 233
Query: 1404 PHILVATPGAL-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI--IIDDEN 1456
PH++VATPG L + K L + ++YL + D L DMD IID
Sbjct: 234 PHVIVATPGRLQDHLENTKGFSL-RGLQYLV----MDEADRLL-----DMDFGPIID--K 281
Query: 1457 LIQPKANSRENALMSKALVSKRKELQ 1482
L+Q R L S + +K +LQ
Sbjct: 282 LLQSIPRERRTMLFSATMTTKVAKLQ 307
>gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
Length = 434
Score = 216 bits (551), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 149/450 (33%), Positives = 222/450 (49%), Gaps = 84/450 (18%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
II A Y+ GFK P +IQ +P AL R DI+G A+TGSGKT AF IP+L + LE P
Sbjct: 21 IIDACYRSGFKKPKEIQRETIPWALKGR-DIIGLAQTGSGKTGAFVIPVLQKL---LEQP 76
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
++ L +APTRELA Q+
Sbjct: 77 ------------------------------------QGIFCLCIAPTRELAFQIAEQFNA 100
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL-----TELYK 953
G VK +VGG+ + Q L K PHI++ +PGR+ FHL L
Sbjct: 101 LGATIGVKTCVLVGGIDSMTQSLQLAKKPHIIIGSPGRII-------FHLENTKGFNLRS 153
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 1013
I Y ++DE DR+ + E+ NIL + + R TF+FSAT+T
Sbjct: 154 IKYFIMDEADRLFGADFEEEVNNILKVI-----PKERNTFLFSATMT------------- 195
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073
SK K+ + L+N P + + K TL + + K+ YL Y +
Sbjct: 196 SKVAKLQRAS--------LVN---PVKIQVATKYQTVDTLIQQYLFIPFKYKECYLVYIL 244
Query: 1074 LQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
+ G T++F ++ +S ++T +L L + +P++ M+Q +RL +L +F+ SIL+
Sbjct: 245 NELAGNLTIIFTSTCASSNKVTLMLRNLGLAAIPINGDMDQAKRLASLSKFKQGTKSILV 304
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVAARGLDIP ++ VI+Y VP S+ YIHR GRTARA N G + L+ ++ +Y ++
Sbjct: 305 ATDVAARGLDIPMVDLVINYDVPTNSKEYIHRVGRTARAGNSGRAITLVTQYDVEMYQRI 364
Query: 1193 FNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
L+KK+D +FP E + + +R+ A
Sbjct: 365 EFVLKKKLD--EFPCQEDTVLIFLERVTQA 392
Score = 149 bits (376), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 142/500 (28%), Positives = 199/500 (39%), Gaps = 166/500 (33%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
II A Y+ GFK P +IQ +P AL R DI+G A+TGSGKT AF IP+L + LE P
Sbjct: 21 IIDACYRSGFKKPKEIQRETIPWALKGR-DIIGLAQTGSGKTGAFVIPVLQKL---LEQP 76
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
++ L +APTRELA Q+
Sbjct: 77 ------------------------------------QGIFCLCIAPTRELAFQIAEQFNA 100
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL-----TELYK 336
G VK +VGG+ + Q L K PHI++ +PGR+ FHL L
Sbjct: 101 LGATIGVKTCVLVGGIDSMTQSLQLAKKPHIIIGSPGRII-------FHLENTKGFNLRS 153
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396
I Y ++DE DR+ + E+ NIL + P++
Sbjct: 154 IKYFIMDEADRLFGADFEEEVNNILKVI-------PKE---------------------- 184
Query: 397 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 456
R TF+FSAT+T SK K+ + L+N P + +
Sbjct: 185 ----RNTFLFSATMT-------------SKVAKLQRA--------SLVN---PVKIQVAT 216
Query: 457 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516
K TL + + K+ YL Y +LN +L + I
Sbjct: 217 KYQTVDTLIQQYLFIPFKYKECYLVY----------------ILN-------ELAGNLTI 253
Query: 517 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS-ISSVKRLTQLLTMLKCSPLPLH 575
T T C K + +L++ G + N + KRL L
Sbjct: 254 IFTST-----CASSNKVT----LMLRNLGLAAIPINGDMDQAKRLASL------------ 292
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
+F+ SIL+ATDVAARGLDIP ++ VI+Y VP S+ YIHR GRT
Sbjct: 293 ------------SKFKQGTKSILVATDVAARGLDIPMVDLVINYDVPTNSKEYIHRVGRT 340
Query: 636 ARANNEGLTVVLIESDEIPL 655
ARA N G + L+ ++ +
Sbjct: 341 ARAGNSGRAITLVTQYDVEM 360
Score = 48.1 bits (113), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
L +APTRELA Q+ G VK +VGG+ + Q L K PHI++ +PG +
Sbjct: 81 CLCIAPTRELAFQIAEQFNALGATIGVKTCVLVGGIDSMTQSLQLAKKPHIIIGSPGRII 140
Query: 1416 L-----KRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANSRENA 1468
K +L +SI+Y +++A + ++E N+++ R
Sbjct: 141 FHLENTKGFNL-RSIKYF-----------IMDEADRLFGADFEEEVNNILKVIPKERNTF 188
Query: 1469 LMSKALVSKRKELQ 1482
L S + SK +LQ
Sbjct: 189 LFSATMTSKVAKLQ 202
Score = 44.3 bits (103), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1232 IKKNRPDN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE 1288
I + P N ++HR GRTARA N G + L+ ++ +Y ++ L+KK+D +FP E
Sbjct: 322 INYDVPTNSKEYIHRVGRTARAGNSGRAITLVTQYDVEMYQRIEFVLKKKLD--EFPCQE 379
Query: 1289 SVLSLIKKRIDLA 1301
+ + +R+ A
Sbjct: 380 DTVLIFLERVTQA 392
>gi|451847806|gb|EMD61113.1| hypothetical protein COCSADRAFT_192893 [Cochliobolus sativus ND90Pr]
Length = 518
Score = 216 bits (551), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 146/467 (31%), Positives = 234/467 (50%), Gaps = 80/467 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E + A F PT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 91 FADLGVREELCDACENLKFTNPTPIQAQAIPLALEGR-DVIGLAETGSGKTAAFVLPILQ 149
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++ K + L+ LILAPTRELA
Sbjct: 150 ALLEK---------------------------------------QQSLFGLILAPTRELA 170
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ + G VK A +VGGM Q L+K PHI+VATPGRL + ++ F L
Sbjct: 171 YQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPHIIVATPGRLLDHLENTKGFSL 230
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L Y+V+DE DR+++ P +LD++ + R T+++SAT+
Sbjct: 231 KHL---KYMVLDEADRLLDLDFGP----VLDKILKVLPREGRHTYLYSATM--------- 274
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG-ITKTLTESKILCKHDEKDS 1067
S KV S++R +++P V ++ + TL + I H KD
Sbjct: 275 -------SSKVE----SLQRAA----LQNPVRVSISSSSHQVVSTLLQRYIFLPHKYKDL 319
Query: 1068 YLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
YL + + + HP T++F +++ +R+ LL L +PLH ++Q RL L++F+
Sbjct: 320 YLIHLLNDNIGHP--TIIFSRTVNETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFK 377
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
Q+ IL+ATDVAARGLDIP ++ V+++ +P S+ Y+HR GRTARA G + +
Sbjct: 378 TQSRDILVATDVAARGLDIPAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQY 437
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ +++++ N+L K++ P+ I++ + +R++ A+ I E K
Sbjct: 438 DLEIWLRIENALGKQI--PEEVINKDEAMVYMERVNEAQRIAVREMK 482
Score = 173 bits (438), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 208/498 (41%), Gaps = 156/498 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E + A F PT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 91 FADLGVREELCDACENLKFTNPTPIQAQAIPLALEGR-DVIGLAETGSGKTAAFVLPILQ 149
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++ K + L+ LILAPTRELA
Sbjct: 150 ALLEK---------------------------------------QQSLFGLILAPTRELA 170
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ + G VK A +VGGM Q L+K PHI+VATPGRL + ++ F L
Sbjct: 171 YQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPHIIVATPGRLLDHLENTKGFSL 230
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L Y+V+DE DR+++ P L IL + PR+
Sbjct: 231 KHL---KYMVLDEADRLLDLDFGPVLDKILKVL-------PREG---------------- 264
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R T+++SAT+ S KV S++R +++P
Sbjct: 265 ---------RHTYLYSATM----------------SSKVE----SLQRAA----LQNPVR 291
Query: 452 VDLTEKIG-ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
V ++ + TL + I H KD YL + + NI P I+
Sbjct: 292 VSISSSSHQVVSTLLQRYIFLPHKYKDLYLIHLLND--------------NIGHPTII-- 335
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
++T+ E+ +R+ LL L
Sbjct: 336 -----FSRTVNET----------------------------------QRIAILLRTLGFG 356
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+PLH ++Q RL L++F+ Q+ IL+ATDVAARGLDIP ++ V+++ +P S+ Y+H
Sbjct: 357 AIPLHGQLSQSARLGALNKFKTQSRDILVATDVAARGLDIPAVDLVVNFDLPSDSQTYVH 416
Query: 631 RSGRTARANNEGLTVVLI 648
R GRTARA G V +
Sbjct: 417 RVGRTARAGKSGKAVSFV 434
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 37/62 (59%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S LILAPTRELA Q+ + G VK A +VGGM Q L+K PHI+VATPG
Sbjct: 157 SLFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPHIIVATPG 216
Query: 1413 AL 1414
L
Sbjct: 217 RL 218
>gi|358386646|gb|EHK24241.1| hypothetical protein TRIVIDRAFT_31450 [Trichoderma virens Gv29-8]
Length = 479
Score = 216 bits (551), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 140/459 (30%), Positives = 231/459 (50%), Gaps = 81/459 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + I +++ A +K PT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 58 FKELGIVDSLCEACESLNYKHPTSIQAKSIPVALQGR-DVIGLAETGSGKTAAFALPILQ 116
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LE P L+ L+LAPTRELA
Sbjct: 117 AL---LEKP------------------------------------QPLFGLVLAPTRELA 137
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ G ++ A +VGG+ Q L K PHI+VATPGRL + H T
Sbjct: 138 AQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVD-----HLEKT 192
Query: 950 E---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
+ L + YLV+DE DR+++ P + IL + + R+T++FSATL+ ++
Sbjct: 193 KGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFI-----PRERRTYLFSATLSSKVE-- 245
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEK 1065
S++R +++ P V ++ K TL + I H K
Sbjct: 246 ------------------SLQRA----SLRDPVRVSVSSSKYQTVSTLLQHYIFVPHKRK 283
Query: 1066 DSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
D+YL Y + + G++++ F ++ +R+ LL L +PLH ++Q RL L++F+
Sbjct: 284 DTYLIYLVNEFAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFK 343
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+ IL+ATDVAARGLDIP ++ V++ +P+ S+ YIHR GRTARA G+ + ++
Sbjct: 344 GGSREILVATDVAARGLDIPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGIAISIVTQY 403
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
++ +Y ++ +L K+++ +P ++ + + R++ A+
Sbjct: 404 DVEIYQRIEAALGKQLE--TYPTEKEEVMAFQSRVEEAQ 440
Score = 180 bits (456), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 139/500 (27%), Positives = 213/500 (42%), Gaps = 161/500 (32%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + I +++ A +K PT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 58 FKELGIVDSLCEACESLNYKHPTSIQAKSIPVALQGR-DVIGLAETGSGKTAAFALPILQ 116
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LE P L+ L+LAPTRELA
Sbjct: 117 AL---LEKP------------------------------------QPLFGLVLAPTRELA 137
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ G ++ A +VGG+ Q L K PHI+VATPGRL + H T
Sbjct: 138 AQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVD-----HLEKT 192
Query: 333 E---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+ L + YLV+DE DR+++ P + IL + PR+
Sbjct: 193 KGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFI-------PRE--------------- 230
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
R+T++FSATL+ ++ S++R +++ P
Sbjct: 231 -----------RRTYLFSATLSSKVE--------------------SLQR----ASLRDP 255
Query: 450 KIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508
V + + K TL + I H KD+YL Y + + G+++
Sbjct: 256 VRVSVSSSKYQTVSTLLQHYIFVPHKRKDTYLIYLVNEFAGKSI---------------- 299
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 568
I T+T+ E+ +R+ LL L
Sbjct: 300 -----IIFTRTVFET----------------------------------QRIAILLRTLG 320
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
+PLH ++Q RL L++F+ + IL+ATDVAARGLDIP ++ V++ +P+ S+ Y
Sbjct: 321 FGAIPLHGQLSQSSRLGALNKFKGGSREILVATDVAARGLDIPAVDVVLNLDLPQDSKTY 380
Query: 629 IHRSGRTARANNEGLTVVLI 648
IHR GRTARA G+ + ++
Sbjct: 381 IHRVGRTARAGKSGIAISIV 400
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
L+LAPTRELA Q+ G ++ A +VGG+ Q L K PHI+VATPG L
Sbjct: 127 GLVLAPTRELAAQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLV 186
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
K L +S++YL + D L DMD + +++ R L
Sbjct: 187 DHLEKTKGFSL-RSLKYL----VMDEADRLL-----DMDFGPSIDKILKFIPRERRTYLF 236
Query: 1471 SKALVSKRKELQ 1482
S L SK + LQ
Sbjct: 237 SATLSSKVESLQ 248
>gi|367033825|ref|XP_003666195.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
gi|347013467|gb|AEO60950.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
Length = 493
Score = 216 bits (551), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 231/463 (49%), Gaps = 95/463 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I +++ A + G+K PT IQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 70 LGIVDSLCDACERLGYKNPTPIQQEAIPLALQNR-DIIGIAETGSGKTAAFALPILQALL 128
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K + L+AL+LAPTRELA Q+
Sbjct: 129 DKPQ---------------------------------------PLFALVLAPTRELAAQI 149
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A ++GG+ +Q L K PH++VATPGRL L H T+
Sbjct: 150 AQAFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRL-----LDHLEKTKGF 204
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH-------- 1001
L + +LV+DE DR+++ P L+ IL + + R+TF+FSAT++
Sbjct: 205 SLRNLKFLVMDEADRLLDMDFGPILEKILKFL-----PRERRTFLFSATMSSKVESLQRA 259
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
SL++ L + SK + VS TL ++ I
Sbjct: 260 SLRDPLKVSISSSKYQTVS-------------------------------TLVQNYIFIP 288
Query: 1062 HDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
H KD+YL Y + G+T++ F ++ +R+ LL L +PLH ++Q RL L
Sbjct: 289 HMHKDTYLIYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGAL 348
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
++FR ++ IL+ATDVAARGLDIP ++ V+++ +P+ S+ Y+HR GRTARA G +
Sbjct: 349 NKFRAKSRDILVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISF 408
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
+ ++ +++++ +L K L ++ ++ + + K R++ A+
Sbjct: 409 VTQYDLEIWLRIEAALGTK--LTEYATEKDEVMVFKPRVEEAQ 449
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 154/559 (27%), Positives = 235/559 (42%), Gaps = 189/559 (33%)
Query: 103 NKTEEI-QSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVK-FNIPE 160
+KTE I +S+EPS ++ E VD ++ E + + + I +
Sbjct: 27 SKTEPIPKSNEPSHD------------AGSDAESATVDNASREGNGKSVVKTFRDLGIVD 74
Query: 161 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 220
++ A + G+K PT IQ +P AL R DI+G AETGSGKT AF +PIL +++K +
Sbjct: 75 SLCDACERLGYKNPTPIQQEAIPLALQNR-DIIGIAETGSGKTAAFALPILQALLDKPQ- 132
Query: 221 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 280
L+AL+LAPTRELA Q+
Sbjct: 133 --------------------------------------PLFALVLAPTRELAAQIAQAFE 154
Query: 281 DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKI 337
G ++ A ++GG+ +Q L K PH++VATPGRL L H T+ L +
Sbjct: 155 ALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRL-----LDHLEKTKGFSLRNL 209
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
+LV+DE DR+++ P L+ IL + PR+
Sbjct: 210 KFLVMDEADRLLDMDFGPILEKILKFL-------PRE----------------------- 239
Query: 398 SQPRQTFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
R+TF+FSAT++ SL++ L + SK + VS
Sbjct: 240 ---RRTFLFSATMSSKVESLQRASLRDPLKVSISSSKYQTVS------------------ 278
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
TL ++ I H KD+YL Y + G+T+
Sbjct: 279 -------------TLVQNYIFIPHMHKDTYLIYLCNEFAGQTI----------------- 308
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
I T+T+ E+ +R+ LL L
Sbjct: 309 ----IIFTRTVLET----------------------------------QRIAILLRTLGM 330
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+PLH ++Q RL L++FR ++ IL+ATDVAARGLDIP ++ V+++ +P+ S+ Y+
Sbjct: 331 GAIPLHGGLSQSARLGALNKFRAKSRDILVATDVAARGLDIPNVDCVLNFDLPQDSKTYV 390
Query: 630 HRSGRTARANNEGLTVVLI 648
HR GRTARA G + +
Sbjct: 391 HRVGRTARAGKSGHAISFV 409
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+LAPTRELA Q+ G ++ A ++GG+ +Q L K PH++VATPG L
Sbjct: 136 ALVLAPTRELAAQIAQAFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRL- 194
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKAL 1474
L ++ K K + + D L DMD E +++ R L S +
Sbjct: 195 LDHLEKTKGFSLRNLKFLVMDEADRLL-----DMDFGPILEKILKFLPRERRTFLFSATM 249
Query: 1475 VSKRKELQ 1482
SK + LQ
Sbjct: 250 SSKVESLQ 257
>gi|409082704|gb|EKM83062.1| hypothetical protein AGABI1DRAFT_33446 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200570|gb|EKV50494.1| hypothetical protein AGABI2DRAFT_64060 [Agaricus bisporus var.
bisporus H97]
Length = 453
Score = 216 bits (551), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 147/457 (32%), Positives = 232/457 (50%), Gaps = 84/457 (18%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
++ +L Q FK PT+IQ +P AL R DI+G A TGSGKT AFG+PIL
Sbjct: 28 LLESLEQLNFKIPTEIQVEALPHALEGR-DIIGVAATGSGKTAAFGLPIL---------- 76
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
++L EE L+A +LAPTRELA Q+ +
Sbjct: 77 ------------------QKLWEEPKG-----------LFACVLAPTRELAYQISQQLES 107
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKIN 955
G + A +VGGM Q L K PHI+VATPGRL + H T+ L I
Sbjct: 108 LGSAMGARCAVIVGGMDMPAQAIALAKRPHIVVATPGRLMD-----HLEKTKGFNLRNIK 162
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
+LV+DE DR+++ + I+D++ + + R T++FSAT+T +K
Sbjct: 163 FLVLDEADRLLDL----DFGTIIDKI-LKLIPKERTTYLFSATMT-------------TK 204
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF--- 1072
K+ + ++ +P V+++ K TL + +L +KD+YL Y
Sbjct: 205 VAKLQRA-----------SLSNPVRVEVSTKYQTVSTLLQYYLLMPLKDKDAYLVYLANT 253
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
+ Q+ ++F ++ RL+ +L L +PLH ++Q QRL L +F+ +L+
Sbjct: 254 LAQN--SIIIFTRTVHDASRLSIILRTLGFPAVPLHGQLSQSQRLGALGQFKSGGRRVLV 311
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ L+ ++ L ++
Sbjct: 312 ATDVASRGLDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRI 371
Query: 1193 FNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
+ KK++L +P D+ ++L+++R D A + E
Sbjct: 372 EQVIGKKMEL--WPTDDQEIALLRERADEAGRVAAAE 406
Score = 180 bits (456), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 142/497 (28%), Positives = 214/497 (43%), Gaps = 160/497 (32%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
++ +L Q FK PT+IQ +P AL R DI+G A TGSGKT AFG+PIL
Sbjct: 28 LLESLEQLNFKIPTEIQVEALPHALEGR-DIIGVAATGSGKTAAFGLPIL---------- 76
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
++L EE L+A +LAPTRELA Q+ +
Sbjct: 77 ------------------QKLWEEPKG-----------LFACVLAPTRELAYQISQQLES 107
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKIN 338
G + A +VGGM Q L K PHI+VATPGRL + H T+ L I
Sbjct: 108 LGSAMGARCAVIVGGMDMPAQAIALAKRPHIVVATPGRLMD-----HLEKTKGFNLRNIK 162
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS 398
+LV+DE DR+++ + I+D++ LK I
Sbjct: 163 FLVLDEADRLLDL----DFGTIIDKI--------------------LKLI---------P 189
Query: 399 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458
+ R T++FSAT+T +K K+ + ++ +P V+++ K
Sbjct: 190 KERTTYLFSATMT-------------TKVAKLQRA-----------SLSNPVRVEVSTKY 225
Query: 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITK 518
TL + +L +KD+YL Y +
Sbjct: 226 QTVSTLLQYYLLMPLKDKDAYLVY---------------------------------LAN 252
Query: 519 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 578
TL ++ I ++F ++ RL+ +L L +PLH +
Sbjct: 253 TLAQNSI----------------------IIFTRTVHDASRLSIILRTLGFPAVPLHGQL 290
Query: 579 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638
+Q QRL L +F+ +L+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA
Sbjct: 291 SQSQRLGALGQFKSGGRRVLVATDVASRGLDIPSVDVVINFDIPTHSKDYIHRVGRTARA 350
Query: 639 NNEGLTVVLIESDEIPL 655
G ++ L+ ++ L
Sbjct: 351 GRAGKSITLVTQYDVEL 367
Score = 57.0 bits (136), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A +LAPTRELA Q+ + G + A +VGGM Q L K PHI+VATPG L
Sbjct: 88 ACVLAPTRELAYQISQQLESLGSAMGARCAVIVGGMDMPAQAIALAKRPHIVVATPGRL 146
Score = 42.0 bits (97), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ ++ L ++ + KK++L +P D+ ++L+++R
Sbjct: 339 DYIHRVGRTARAGRAGKSITLVTQYDVELVQRIEQVIGKKMEL--WPTDDQEIALLRERA 396
Query: 1299 DLAKSIEYLE 1308
D A + E
Sbjct: 397 DEAGRVAAAE 406
>gi|343428869|emb|CBQ72414.1| probable DEAD box protein (putative RNA helicase) [Sporisorium
reilianum SRZ2]
Length = 568
Score = 216 bits (550), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 144/448 (32%), Positives = 227/448 (50%), Gaps = 77/448 (17%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
IP+ I+ A GFK PT IQ +P AL AR D++G A+TGSGKT AF IPIL +
Sbjct: 129 IPQ-IVEACTNMGFKHPTPIQVKAIPEALQAR-DVIGLAQTGSGKTAAFTIPILQAL--- 183
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+NP +A +LAPTRELA Q+
Sbjct: 184 WDNP------------------------------------KPFFACVLAPTRELAYQISQ 207
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
+ G V+ A +VGGM Q L+K PH++VATPGRL + ++ + L +
Sbjct: 208 QVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQDHLE--NTKGFSLRGL 265
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
YLV+DE DR+++ P + +L + + R+T +FSAT+T +
Sbjct: 266 QYLVMDEADRLLDMDFGPIIDKLLQSI-----PRERRTMLFSATMT-------------T 307
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K+ + ++K+P V++ K TL + + KD+YL +
Sbjct: 308 KVAKLQRA-----------SLKNPVRVEVDTKYTTVSTLKQHYLFMPFAHKDTYLVHLAN 356
Query: 1075 QHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+ G ++ VF ++ +RL+ LL +L +PLH ++Q+ RL L++F+ SIL+A
Sbjct: 357 EQAGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVA 416
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVA+RGLDIP ++ V++Y +P S+ YIHR GRTARA G ++ L+ ++ L ++
Sbjct: 417 TDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRIE 476
Query: 1194 NSLEKKVDLPDFPI--DESVLSLIKKRI 1219
+ K + +FP D+ + L+ +R+
Sbjct: 477 AVIGLK--MTEFPGGNDKEAVMLLSERV 502
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 144/498 (28%), Positives = 216/498 (43%), Gaps = 155/498 (31%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
IP+ I+ A GFK PT IQ +P AL AR D++G A+TGSGKT AF IPIL +
Sbjct: 129 IPQ-IVEACTNMGFKHPTPIQVKAIPEALQAR-DVIGLAQTGSGKTAAFTIPILQAL--- 183
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+NP +A +LAPTRELA Q+
Sbjct: 184 WDNP------------------------------------KPFFACVLAPTRELAYQISQ 207
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
+ G V+ A +VGGM Q L+K PH++VATPGRL + ++ + L +
Sbjct: 208 QVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQDHLE--NTKGFSLRGL 265
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
YLV+DE DR+++ P + +L + PR+
Sbjct: 266 QYLVMDEADRLLDMDFGPIIDKLLQSI-------PRE----------------------- 295
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
R+T +FSAT+T +K K+ + ++K+P V++ K
Sbjct: 296 ---RRTMLFSATMT-------------TKVAKLQRA-----------SLKNPVRVEVDTK 328
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
TL + + KD+YL + + G ++ I T
Sbjct: 329 YTTVSTLKQHYLFMPFAHKDTYLVHLANEQAGHSI---------------------IVFT 367
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+T+ HD +RL+ LL +L +PLH
Sbjct: 368 RTV--------HDS--------------------------QRLSILLRLLGFPAIPLHGQ 393
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
++Q+ RL L++F+ SIL+ATDVA+RGLDIP ++ V++Y +P S+ YIHR GRTAR
Sbjct: 394 LSQQARLGALNKFKTGGRSILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTAR 453
Query: 638 ANNEGLTVVLIESDEIPL 655
A G +V L+ ++ L
Sbjct: 454 AGRSGRSVTLVTQYDVEL 471
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 25/146 (17%)
Query: 1350 LRYSWD------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
L+ WD A +LAPTRELA Q+ + G V+ A +VGGM Q L+K
Sbjct: 180 LQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKR 239
Query: 1404 PHILVATPGAL-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI--IIDDEN 1456
PH++VATPG L + K L + ++YL + D L DMD IID
Sbjct: 240 PHVIVATPGRLQDHLENTKGFSL-RGLQYLV----MDEADRLL-----DMDFGPIID--K 287
Query: 1457 LIQPKANSRENALMSKALVSKRKELQ 1482
L+Q R L S + +K +LQ
Sbjct: 288 LLQSIPRERRTMLFSATMTTKVAKLQ 313
>gi|443726900|gb|ELU13896.1| hypothetical protein CAPTEDRAFT_175937 [Capitella teleta]
Length = 453
Score = 216 bits (550), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 143/445 (32%), Positives = 228/445 (51%), Gaps = 76/445 (17%)
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G+K P+KIQ +P AL D++G AETGSGKT +F +P+L + L+NP
Sbjct: 46 GWKAPSKIQKESIPVALQG-SDVIGLAETGSGKTGSFALPVLQTL---LDNP-------- 93
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
++Y L+L PTRELA Q+ G VK
Sbjct: 94 ----------------------------QRMYCLVLTPTRELAFQISEQFEALGASIGVK 125
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRM 965
A +VGGM Q +L K PHI++ATPGRL + ++ F+L L YLV+DE DR+
Sbjct: 126 CAVIVGGMDMMTQSMVLAKKPHIIIATPGRLVDHLENTKGFNLRAL---KYLVMDEADRI 182
Query: 966 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 1025
+ E+ IL + + R+T+++SAT+T SK K+ +
Sbjct: 183 LNMDFEQEVNKILKVI-----PKERKTYLYSATMT-------------SKVAKLQRA--- 221
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFC 1084
+K+P V+++ K L +S KD YL Y + + G + +VFC
Sbjct: 222 --------CLKNPVKVEVSTKYQTVDKLQQSYCFIPAKFKDVYLVYILNELAGNSFIVFC 273
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
++ ++ +R+ +L L + +PLH MNQ +RL L++F+ ++ SIL+ATDVA+RGLDIP
Sbjct: 274 STCANTQRVALMLRNLGMTAIPLHGQMNQTKRLGALNKFKSKSRSILIATDVASRGLDIP 333
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD 1204
+ V+++ +P S+ YIHR GRTARA G + L+ ++ LY ++ + KK LP
Sbjct: 334 HVNVVVNFDIPTHSKDYIHRVGRTARAGKSGKAITLVTQYDVELYQRIEQLIGKK--LPL 391
Query: 1205 FPIDESVLSLIKKRIDLAKSIEYLE 1229
+ ++ + ++ +R+ A+ +E
Sbjct: 392 YKTEQEEVMMMTERVTEAQRYAKME 416
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 135/487 (27%), Positives = 210/487 (43%), Gaps = 156/487 (32%)
Query: 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229
G+K P+KIQ +P AL D++G AETGSGKT +F +P+L + L+NP
Sbjct: 46 GWKAPSKIQKESIPVALQG-SDVIGLAETGSGKTGSFALPVLQTL---LDNP-------- 93
Query: 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 289
++Y L+L PTRELA Q+ G VK
Sbjct: 94 ----------------------------QRMYCLVLTPTRELAFQISEQFEALGASIGVK 125
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRM 348
A +VGGM Q +L K PHI++ATPGRL + ++ F+L L YLV+DE DR+
Sbjct: 126 CAVIVGGMDMMTQSMVLAKKPHIIIATPGRLVDHLENTKGFNLRAL---KYLVMDEADRI 182
Query: 349 IESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 408
+ E+ IL + P++ R+T+++SA
Sbjct: 183 LNMDFEQEVNKILKVI-------PKE--------------------------RKTYLYSA 209
Query: 409 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468
T+T SK K+ + +K+P V+++ K L +S
Sbjct: 210 TMT-------------SKVAKLQRA-----------CLKNPVKVEVSTKYQTVDKLQQSY 245
Query: 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 528
KD YL Y + + G
Sbjct: 246 CFIPAKFKDVYLVYILNELAG--------------------------------------- 266
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
+S++ + C++ ++ +R+ +L L + +PLH MNQ +RL L+
Sbjct: 267 ----NSFIVF------------CSTCANTQRVALMLRNLGMTAIPLHGQMNQTKRLGALN 310
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+F+ ++ SIL+ATDVA+RGLDIP + V+++ +P S+ YIHR GRTARA G + L+
Sbjct: 311 KFKSKSRSILIATDVASRGLDIPHVNVVVNFDIPTHSKDYIHRVGRTARAGKSGKAITLV 370
Query: 649 ESDEIPL 655
++ L
Sbjct: 371 TQYDVEL 377
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA Q+ G VK A +VGGM Q +L K PHI++ATPG L
Sbjct: 98 CLVLTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMMTQSMVLAKKPHIIIATPGRL 156
>gi|339243967|ref|XP_003377909.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
Length = 496
Score = 216 bits (550), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 162/482 (33%), Positives = 248/482 (51%), Gaps = 82/482 (17%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+ +A K +P + A Q + PTK+Q +P AL R D++G AETGSGKT AF
Sbjct: 60 ILIACCTKGVVP-VLCEACKQLNWTDPTKVQIEAIPLALQGR-DVIGLAETGSGKTAAFA 117
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
+PIL + LE+P +L+AL+L P
Sbjct: 118 LPILQAL---LEHP------------------------------------QRLFALVLTP 138
Query: 885 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-L 943
TRELA Q+ G +KVA +VGG+ Q L K PH++VATPGRL + ++
Sbjct: 139 TRELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPHVIVATPGRLVDHLENT 198
Query: 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003
F L L YLV+DE DR+++ E+ IL + + R+T++FSAT+T
Sbjct: 199 KGFSLRSL---KYLVMDEADRILDMDFESEVNKILQVI-----PRERKTYLFSATMT--- 247
Query: 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 1063
KKV+K + LQD P V+++ K L + I
Sbjct: 248 -------------KKVTKLQRA--SLQD------PVKVEVSSKYQTVDKLQQHYIFIPQK 286
Query: 1064 EKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 1122
KD YL Y + + G++ +VF ++ ++ R LL L + +PLH M+Q +RL L++
Sbjct: 287 FKDCYLVYILNEMAGKSCIVFTSTCANSLRTALLLRNLGFTAVPLHGQMSQAKRLGALNK 346
Query: 1123 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIE 1182
F+ ++ SIL+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G+++ +
Sbjct: 347 FKAKDRSILIATDVASRGLDIPHVDLVINFDIPTHSKDYIHRVGRTARAGRAGISITFVT 406
Query: 1183 SDEIPLYIKMFNSLEKKVDLPDFPIDE-SVLSLIKKRID---LAK-SIEYLESKIKKNRP 1237
++ LY ++ L K+ LP F +E VLSL+++ + +AK ++ LE K + N+
Sbjct: 407 QYDVELYQRIEYLLGKQ--LPLFKTEEPEVLSLLERVTEANRIAKMQVKELEDKKRTNKK 464
Query: 1238 DN 1239
N
Sbjct: 465 RN 466
Score = 174 bits (442), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 149/509 (29%), Positives = 220/509 (43%), Gaps = 157/509 (30%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+ +A K +P + A Q + PTK+Q +P AL R D++G AETGSGKT AF
Sbjct: 60 ILIACCTKGVVP-VLCEACKQLNWTDPTKVQIEAIPLALQGR-DVIGLAETGSGKTAAFA 117
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
+PIL + LE+P +L+AL+L P
Sbjct: 118 LPILQAL---LEHP------------------------------------QRLFALVLTP 138
Query: 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-L 326
TRELA Q+ G +KVA +VGG+ Q L K PH++VATPGRL + ++
Sbjct: 139 TRELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPHVIVATPGRLVDHLENT 198
Query: 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386
F L L YLV+DE DR+++ E+ IL + PR+
Sbjct: 199 KGFSLRSL---KYLVMDEADRILDMDFESEVNKILQVI-------PRE------------ 236
Query: 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 446
R+T++FSAT+T KKV+K + LQD
Sbjct: 237 --------------RKTYLFSATMT----------------KKVTKLQRA--SLQD---- 260
Query: 447 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPK 506
P V+++ K L + I KD YL Y + + G++
Sbjct: 261 --PVKVEVSSKYQTVDKLQQHYIFIPQKFKDCYLVYILNEMAGKSC-------------- 304
Query: 507 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 566
I T T C + + + L L++ G T V
Sbjct: 305 -------IVFTST-------CANSLRTALL----LRNLGFTAV----------------- 329
Query: 567 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626
PLH M+Q +RL L++F+ ++ SIL+ATDVA+RGLDIP ++ VI++ +P S+
Sbjct: 330 ------PLHGQMSQAKRLGALNKFKAKDRSILIATDVASRGLDIPHVDLVINFDIPTHSK 383
Query: 627 IYIHRSGRTARANNEGLTVVLIESDEIPL 655
YIHR GRTARA G+++ + ++ L
Sbjct: 384 DYIHRVGRTARAGRAGISITFVTQYDVEL 412
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G +KVA +VGG+ Q L K PH++VATPG L
Sbjct: 133 ALVLTPTRELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPHVIVATPGRLV 192
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
+ K L +S++YL + D L DMD + ++Q R+ L
Sbjct: 193 DHLENTKGFSL-RSLKYL----VMDEADRIL-----DMDFESEVNKILQVIPRERKTYLF 242
Query: 1471 SKALVSKRKELQ 1482
S + K +LQ
Sbjct: 243 SATMTKKVTKLQ 254
>gi|298711460|emb|CBJ32599.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 848
Score = 216 bits (550), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 148/483 (30%), Positives = 239/483 (49%), Gaps = 85/483 (17%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
E D ED+ A + + + A Q G+ T+IQ +P A KD++G A
Sbjct: 395 EADEPPPEDI---KASFESLGVTGPLCEAAAQLGWTHATEIQRQALPLAFEG-KDVIGLA 450
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
ETGSGKT AF +PIL + LENP
Sbjct: 451 ETGSGKTGAFALPILQAL---LENP----------------------------------- 472
Query: 874 RNKLYALILAPTRELAIQVQNHILDA-GKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 932
+L+A+I+APTRELA Q+ N +++A G +K C+VGG+ +Q L PH+++A
Sbjct: 473 -QRLFAVIMAPTRELAFQI-NEVMEALGVGIGLKTVCIVGGIDMFQQSVALALKPHVVIA 530
Query: 933 TPGRLWEFIQLGHFHLTELYKIN---YLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
TPGRL + H T+ + + YLV+DE DRM+ E+ +L + +
Sbjct: 531 TPGRLVD-----HLENTKGFSLRTAKYLVLDEADRMLGMDFEEEINKVLSVL-----PRE 580
Query: 990 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 1049
R+TF+FSAT+T SK K+ + ++K+P V++ K
Sbjct: 581 RRTFLFSATMT-------------SKVAKLQR-----------ASLKNPARVEVANKFST 616
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
KTL + + KD YL Y + + G+ T+VF ++ ++ +R+ LL L + LH
Sbjct: 617 PKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLH 676
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
M Q +RL L +F+ ++L+ATDVA+RGLDIP ++ V++ +P + YIHR GRT
Sbjct: 677 GQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNMEIPSHGKDYIHRVGRT 736
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL 1228
ARA G ++ + ++ +Y +M + +K LP + DE + ++++R+ A+ +
Sbjct: 737 ARAGRAGRSIAFVTQYDVEVYQRMEALIGQK--LPPYVCDEETVLVLQERVGEAQRMAAR 794
Query: 1229 ESK 1231
E +
Sbjct: 795 EMR 797
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 136/516 (26%), Positives = 212/516 (41%), Gaps = 165/516 (31%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
E D ED+ A + + + A Q G+ T+IQ +P A KD++G A
Sbjct: 395 EADEPPPEDI---KASFESLGVTGPLCEAAAQLGWTHATEIQRQALPLAFEG-KDVIGLA 450
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
ETGSGKT AF +PIL + LENP
Sbjct: 451 ETGSGKTGAFALPILQAL---LENP----------------------------------- 472
Query: 257 RNKLYALILAPTRELAIQVQNHILDA-GKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 315
+L+A+I+APTRELA Q+ N +++A G +K C+VGG+ +Q L PH+++A
Sbjct: 473 -QRLFAVIMAPTRELAFQI-NEVMEALGVGIGLKTVCIVGGIDMFQQSVALALKPHVVIA 530
Query: 316 TPGRLWEFIQLGHFHLTELYKIN---YLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
TPGRL + H T+ + + YLV+DE DRM+ E+ +L + P
Sbjct: 531 TPGRLVD-----HLENTKGFSLRTAKYLVLDEADRMLGMDFEEEINKVLSVL-------P 578
Query: 373 RQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK 432
R+ R+TF+FSAT+T SK K+ +
Sbjct: 579 RE--------------------------RRTFLFSATMT-------------SKVAKLQR 599
Query: 433 GDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
++K+P V++ K KTL + + KD YL Y + + G++
Sbjct: 600 -----------ASLKNPARVEVANKFSTPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQST 648
Query: 493 CEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 552
+ N + ++ L +G + +C H +
Sbjct: 649 IVFVSTCNNAQ--RVALLLRNLGF-------QAVCLHGQ--------------------- 678
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
M Q +RL L +F+ ++L+ATDVA+RGLDIP
Sbjct: 679 -------------------------MGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPS 713
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
++ V++ +P + YIHR GRTARA G ++ +
Sbjct: 714 VDLVVNMEIPSHGKDYIHRVGRTARAGRAGRSIAFV 749
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDA-GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A+I+APTRELA Q+ N +++A G +K C+VGG+ +Q L PH+++ATPG L
Sbjct: 477 AVIMAPTRELAFQI-NEVMEALGVGIGLKTVCIVGGIDMFQQSVALALKPHVVIATPGRL 535
>gi|17555296|ref|NP_499069.1| Protein T26G10.1 [Caenorhabditis elegans]
gi|465975|sp|P34580.1|DDX47_CAEEL RecName: Full=Putative ATP-dependent RNA helicase T26G10.1
gi|3880293|emb|CAA82362.1| Protein T26G10.1 [Caenorhabditis elegans]
Length = 489
Score = 216 bits (550), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 219/434 (50%), Gaps = 74/434 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + + + A + G+ P+KIQ +P AL KD++G AETGSGKT AF IP+L
Sbjct: 46 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQG-KDVIGLAETGSGKTGAFAIPVLQ 104
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ L++P + L+L PTRELA
Sbjct: 105 SL---LDHP------------------------------------QAFFCLVLTPTRELA 125
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G + A +VGG+ Q L + PHI+VATPGRL + ++ F+L
Sbjct: 126 FQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNL 185
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L +L++DE DR++ EL IL + + R+T++FSAT+T
Sbjct: 186 KAL---KFLIMDEADRILNMDFEVELDKILKVI-----PRERRTYLFSATMT-------- 229
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKVSK + + +++ P V ++ + L + I + K++Y
Sbjct: 230 --------KKVSKLERA--------SLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETY 273
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + +H G + +VFC + ++ ++ +L L +PLH M+Q +RL +L++F+ +
Sbjct: 274 LVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKA 333
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ TDVAARGLDIP ++ VI+Y +P S+ Y+HR GRTARA G+ + ++ ++
Sbjct: 334 REILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVE 393
Query: 1188 LYIKMFNSLEKKVD 1201
Y K+ +L KK+D
Sbjct: 394 AYQKIEANLGKKLD 407
Score = 173 bits (438), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 144/560 (25%), Positives = 232/560 (41%), Gaps = 168/560 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + + + A + G+ P+KIQ +P AL KD++G AETGSGKT AF IP+L
Sbjct: 46 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQG-KDVIGLAETGSGKTGAFAIPVLQ 104
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ L++P + L+L PTRELA
Sbjct: 105 SL---LDHP------------------------------------QAFFCLVLTPTRELA 125
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G + A +VGG+ Q L + PHI+VATPGRL + ++ F+L
Sbjct: 126 FQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNL 185
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L +L++DE DR++ EL IL + PR+
Sbjct: 186 KAL---KFLIMDEADRILNMDFEVELDKILKVI-------PRE----------------- 218
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+T++FSAT+T KKVSK + + +++ P
Sbjct: 219 ---------RRTYLFSATMT----------------KKVSKLERA--------SLRDPAR 245
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V ++ + L + I + K++YL Y + +H G +
Sbjct: 246 VSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNS-------------------- 285
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+ + C + ++ ++ +L L
Sbjct: 286 -----------AIVFCA------------------------TCATTMQIAVMLRQLGMQA 310
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M+Q +RL +L++F+ + IL+ TDVAARGLDIP ++ VI+Y +P S+ Y+HR
Sbjct: 311 VPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHR 370
Query: 632 SGRTARANNEGLTVVLI--------ESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDI 683
GRTARA G+ + ++ + E L K + + NE E +E TE+
Sbjct: 371 VGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKLDEYKCVENEVMVLVERTQEATENA 430
Query: 684 NVTV----SSKKKKLKRKQN 699
+ + KK KR+QN
Sbjct: 431 RIEMKEMDEKKKSGKKRRQN 450
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ L+L PTRELA Q+ G + A +VGG+ Q L + PHI+VATPG
Sbjct: 112 AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPG 171
Query: 1413 AL 1414
L
Sbjct: 172 RL 173
>gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|160358659|sp|A6RW56.1|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3
gi|347841755|emb|CCD56327.1| similar to ATP-dependent rRNA helicase rrp3 [Botryotinia fuckeliana]
Length = 486
Score = 216 bits (550), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 245/496 (49%), Gaps = 88/496 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I +++ A G+K PT IQ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 65 LGIVDSLCEACDTLGYKAPTPIQRESIPLALQGR-DLIGLAETGSGKTAAFALPILQALL 123
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K + L+ L+LAPTRELA Q+
Sbjct: 124 DKPQ---------------------------------------PLFGLVLAPTRELAYQI 144
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G VK A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 145 SQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPHIIVATPGRLLDHLE--NTKGFSLR 202
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ YLV+DE DR+++ P ILD++ + + R+T++FSAT++ ++
Sbjct: 203 SLKYLVMDEADRLLDLDFGP----ILDKI-LKVLPRERRTYLFSATISSKVE-------- 249
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYY 1071
S++R ++K P V ++ K TL ++ I KD+YL Y
Sbjct: 250 ------------SLQRA----SLKDPLRVSISSNKYQTVSTLIQNYIFIPLIHKDTYLIY 293
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G++ ++F +++ +R+ LL L +PLH ++Q RL L++FR + I
Sbjct: 294 LLNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREI 353
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L+ATDVAARGLDIP ++ V++Y VP+ S+ YIHR GRTARA G + ++ ++ +++
Sbjct: 354 LVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFM 413
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK------------IKKNRPD 1238
++ +L KK ++P + + + K R++ A+ E K +K RP
Sbjct: 414 RIEAALGKKQ--VEYPTVKDEVMVFKPRVEEAQRHARNEMKNLHEDRGKKGAVLKGRRPA 471
Query: 1239 NWLHRSGRTARANNEG 1254
N R GR EG
Sbjct: 472 NGAKR-GRDEMDREEG 486
Score = 178 bits (451), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 142/494 (28%), Positives = 211/494 (42%), Gaps = 155/494 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I +++ A G+K PT IQ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 65 LGIVDSLCEACDTLGYKAPTPIQRESIPLALQGR-DLIGLAETGSGKTAAFALPILQALL 123
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K + L+ L+LAPTRELA Q+
Sbjct: 124 DKPQ---------------------------------------PLFGLVLAPTRELAYQI 144
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G VK A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 145 SQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPHIIVATPGRLLDHLE--NTKGFSLR 202
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ P L IL + PR+
Sbjct: 203 SLKYLVMDEADRLLDLDFGPILDKILKVL-------PRE--------------------- 234
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+T++FSAT++ ++ S++R ++K P V ++
Sbjct: 235 -----RRTYLFSATISSKVE--------------------SLQR----ASLKDPLRVSIS 265
Query: 456 E-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
K TL ++ I KD+YL Y + + G++ I
Sbjct: 266 SNKYQTVSTLIQNYIFIPLIHKDTYLIYLLNEFAGQS---------------------AI 304
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
T+T+ E+ +R+ LL L +PL
Sbjct: 305 IFTRTVNET----------------------------------QRIAILLRTLGFGAIPL 330
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H ++Q RL L++FR + IL+ATDVAARGLDIP ++ V++Y VP+ S+ YIHR GR
Sbjct: 331 HGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGR 390
Query: 635 TARANNEGLTVVLI 648
TARA G + ++
Sbjct: 391 TARAGKSGHAISVV 404
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G VK A +VGGM Q L K PHI+VATPG L
Sbjct: 131 GLVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPHIIVATPGRL 189
>gi|270005640|gb|EFA02088.1| hypothetical protein TcasGA2_TC007723 [Tribolium castaneum]
Length = 447
Score = 216 bits (549), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 154/458 (33%), Positives = 234/458 (51%), Gaps = 83/458 (18%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
IIR G ++PT IQ+ +P +LA +D +GAA+TGSGKTLAF +PIL + E+P
Sbjct: 15 IIRQCATIGVRSPTPIQTNCIPP-ILAGRDCIGAAKTGSGKTLAFALPILQKLC---EDP 70
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
++ALIL PTRELA Q+ +
Sbjct: 71 Y------------------------------------GIFALILTPTRELAFQIADQFAV 94
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958
GK ++ +VGGM Q + L + PHI+VATPGRL + L + K+ +LV
Sbjct: 95 IGKVMNLRHCVIVGGMDMVVQGKDLARKPHIVVATPGRLAD--HLESCNTFNFNKLRFLV 152
Query: 959 IDETDRMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSK 1017
+DE DR++ GHF E +K I + + RQ FSAT+T +L+ K K
Sbjct: 153 LDEADRLL-GGHFDEQIKTIFQAL-----PKERQNLFFSATITDTLE----------KLK 196
Query: 1018 KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH- 1076
V+ +D+ ++P V E+ L ++ +LC D KD+YL I +
Sbjct: 197 DVTG--------KDVFFYEAPAEVATVEQ------LEQNYVLCPKDVKDAYLVETIRTYR 242
Query: 1077 ---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
G L+F N+ + + L+ L + + LHA M Q+QRL L +F+ ILLA
Sbjct: 243 ATNDGNILIFTNTCKNCQVLSMTLNEVGFENVALHAMMKQQQRLAALAKFKSNTIKILLA 302
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVA+RGLDIP ++ VI++++P+ + YIHR GRTARA G + L+ P IK+
Sbjct: 303 TDVASRGLDIPTVQLVINHNIPKIPKEYIHRVGRTARAGRNGKAISLVT----PYDIKLL 358
Query: 1194 NSLEKKVD--LPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++E+ ++ L +F +D+S + I +I + KS Y++
Sbjct: 359 QAIEQHINTKLTEFKLDDSEVGKIFTQISVTKSEAYIK 396
Score = 176 bits (446), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 144/494 (29%), Positives = 213/494 (43%), Gaps = 151/494 (30%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
IIR G ++PT IQ+ +P +LA +D +GAA+TGSGKTLAF +PIL + E+P
Sbjct: 15 IIRQCATIGVRSPTPIQTNCIPP-ILAGRDCIGAAKTGSGKTLAFALPILQKLC---EDP 70
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
++ALIL PTRELA Q+ +
Sbjct: 71 Y------------------------------------GIFALILTPTRELAFQIADQFAV 94
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341
GK ++ +VGGM Q + L + PHI+VATPGRL + L + K+ +LV
Sbjct: 95 IGKVMNLRHCVIVGGMDMVVQGKDLARKPHIVVATPGRLAD--HLESCNTFNFNKLRFLV 152
Query: 342 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPR 401
+DE DR++ GHF E ++K I + + R
Sbjct: 153 LDEADRLL-GGHFDE---------------------------QIKTIFQAL-----PKER 179
Query: 402 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
Q FSAT+T +L+ K K V+ +D+ ++P V E+
Sbjct: 180 QNLFFSATITDTLE----------KLKDVTG--------KDVFFYEAPAEVATVEQ---- 217
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
L ++ +LC D KD+Y L E I +
Sbjct: 218 --LEQNYVLCPKDVKDAY------------------------------LVETIRTYRATN 245
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
+ IL +F N+ + + L+ L + + LHA M Q+
Sbjct: 246 DGNIL----------------------IFTNTCKNCQVLSMTLNEVGFENVALHAMMKQQ 283
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRL L +F+ ILLATDVA+RGLDIP ++ VI++++P+ + YIHR GRTARA
Sbjct: 284 QRLAALAKFKSNTIKILLATDVASRGLDIPTVQLVINHNIPKIPKEYIHRVGRTARAGRN 343
Query: 642 GLTVVLIESDEIPL 655
G + L+ +I L
Sbjct: 344 GKAISLVTPYDIKL 357
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y ALIL PTRELA Q+ + GK ++ +VGGM Q + L + PHI+VATP
Sbjct: 71 YGIFALILTPTRELAFQIADQFAVIGKVMNLRHCVIVGGMDMVVQGKDLARKPHIVVATP 130
Query: 1412 GALSLKRIDLAKSIEYLES--KIKKNRPDNW-LEKAAKDMDIIIDDE--NLIQPKANSRE 1466
G L+ ++LES N+ L++A + + D++ + Q R+
Sbjct: 131 GRLA----------DHLESCNTFNFNKLRFLVLDEADRLLGGHFDEQIKTIFQALPKERQ 180
Query: 1467 NALMSKALVSKRKELQSLLGKSVQSYQ 1493
N S + ++L+ + GK V Y+
Sbjct: 181 NLFFSATITDTLEKLKDVTGKDVFFYE 207
Score = 42.4 bits (98), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD--LPDFPIDESVLSLI 1294
P ++HR GRTARA G + L+ P IK+ ++E+ ++ L +F +D+S + I
Sbjct: 327 PKEYIHRVGRTARAGRNGKAISLVT----PYDIKLLQAIEQHINTKLTEFKLDDSEVGKI 382
Query: 1295 KKRIDLAKSIEYLE 1308
+I + KS Y++
Sbjct: 383 FTQISVTKSEAYIK 396
>gi|449666070|ref|XP_002163050.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like, partial
[Hydra magnipapillata]
Length = 431
Score = 216 bits (549), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 236/460 (51%), Gaps = 76/460 (16%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+ + + + + G+ PTKIQ +P AL KDI+G AETGSGKT AF +P+L +
Sbjct: 1 GVTDVLCESCLRLGWTHPTKIQREAIPLALEG-KDIIGLAETGSGKTGAFALPVLQTL-- 57
Query: 834 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
L+NP +LYAL++ PTRELA Q+
Sbjct: 58 -LDNP------------------------------------QRLYALVITPTRELAFQIS 80
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELY 952
G +K A +VGG+ Q L K PHI++ATPGRL + ++ F L L
Sbjct: 81 EQFEALGSSIGIKCAVIVGGVDLMTQSLALTKKPHIVIATPGRLVDHLENTKGFSLRSL- 139
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
YL++DE DR++ E+ IL + + R T++FSAT+T
Sbjct: 140 --KYLIMDEADRILNMDFEEEVNKILKVI-----PKERSTYLFSATMT------------ 180
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
KKV+K ++R ++K+P V+++ K + L +S I + KD YL
Sbjct: 181 ----KKVAK----LQRA----SLKNPVKVEVSTKFQTVEKLQQSYIFIPNKFKDCYLVSI 228
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ G + ++FC + ++V+R+ LL L +PLH M Q +RL L++++ ++ +IL
Sbjct: 229 LNDLAGNSFIIFCGTCNNVQRVCLLLRHLGFHAVPLHGQMTQAKRLGALNKYKSKSRTIL 288
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++ LY +
Sbjct: 289 IATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQR 348
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ + KK LP P+ E + L+ +R+ A+ +E K
Sbjct: 349 IEQLIGKK--LPLHPMVEEEVMLLVERVTEAQRYAKMELK 386
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 164/587 (27%), Positives = 253/587 (43%), Gaps = 181/587 (30%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+ + + + + G+ PTKIQ +P AL KDI+G AETGSGKT AF +P+L +
Sbjct: 1 GVTDVLCESCLRLGWTHPTKIQREAIPLALEG-KDIIGLAETGSGKTGAFALPVLQTL-- 57
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
L+NP +LYAL++ PTRELA Q+
Sbjct: 58 -LDNP------------------------------------QRLYALVITPTRELAFQIS 80
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELY 335
G +K A +VGG+ Q L K PHI++ATPGRL + ++ F L L
Sbjct: 81 EQFEALGSSIGIKCAVIVGGVDLMTQSLALTKKPHIVIATPGRLVDHLENTKGFSLRSL- 139
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
YL++DE DR++ E+ IL + P++
Sbjct: 140 --KYLIMDEADRILNMDFEEEVNKILKVI-------PKE--------------------- 169
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R T++FSAT+T KKV+K ++R ++K+P V+++
Sbjct: 170 -----RSTYLFSATMT----------------KKVAK----LQR----ASLKNPVKVEVS 200
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K + L +S I + KD YL +LN DL
Sbjct: 201 TKFQTVEKLQQSYIFIPNKFKDCYLV----------------SILN-------DLA---- 233
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+S++ + C + ++V+R+ LL L +PLH
Sbjct: 234 ----------------GNSFIIF------------CGTCNNVQRVCLLLRHLGFHAVPLH 265
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M Q +RL L++++ ++ +IL+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRT
Sbjct: 266 GQMTQAKRLGALNKYKSKSRTILIATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRT 325
Query: 636 ARANNEGLTVVLIESDEIPLKTKF------NLQEEENNEEEERAEADKEKTEDINVTVSS 689
ARA G ++ + ++ L + L EEE ++ VT +
Sbjct: 326 ARAGRSGRSITFVTQYDVELYQRIEQLIGKKLPLHPMVEEEVMLLVER-------VTEAQ 378
Query: 690 KKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLK 736
+ K++ KQ V E T D DD+ N TE+I SKK+K
Sbjct: 379 RYAKMELKQ------VHETKRKTIDIDDEENSTEKI------SKKMK 413
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++ PTRELA Q+ G +K A +VGG+ Q L K PHI++ATPG L
Sbjct: 66 ALVITPTRELAFQISEQFEALGSSIGIKCAVIVGGVDLMTQSLALTKKPHIVIATPGRL 124
Score = 40.0 bits (92), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ LY ++ + KK LP P+ E + L+ +R+
Sbjct: 317 DYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLIGKK--LPLHPMVEEEVMLLVERV 374
Query: 1299 DLAKSIEYLESK---------IKKNRPDNWLEKAAKDMDIIIDDEN 1335
A+ +E K I + +N EK +K M +D EN
Sbjct: 375 TEAQRYAKMELKQVHETKRKTIDIDDEENSTEKISKKMK--MDHEN 418
>gi|224096618|ref|XP_002310673.1| predicted protein [Populus trichocarpa]
gi|222853576|gb|EEE91123.1| predicted protein [Populus trichocarpa]
Length = 462
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 151/457 (33%), Positives = 230/457 (50%), Gaps = 72/457 (15%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I + ++ A G+K PTKIQ +P AL KD++G A+TGSGKT AF +PIL ++
Sbjct: 31 LGICDQLVEACDSLGWKNPTKIQVEAVPHALEG-KDLIGLAQTGSGKTGAFALPILQALL 89
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
E +K+ +A +L+PTRELAIQ+
Sbjct: 90 -----------------------------------ESSQKSVQPFFACVLSPTRELAIQI 114
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G ++ +VGG+ +Q IL K PHI+VATPGRL + L + L
Sbjct: 115 AEQFEALGSGIGLRCGVLVGGVDIVQQTLILAKRPHIVVATPGRLLD--HLSNTKGFSLR 172
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ YLV+DE DR++ L IL+ + + R+T++FSAT+T
Sbjct: 173 TLKYLVLDEADRLLNEEFEKSLDEILNVI-----PRDRKTYLFSATMT------------ 215
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
KKV K+LQ +++P ++ K TL + KD YL Y
Sbjct: 216 ----KKV-------KKLQRAC-LRNPVKIEAASKYSTVDTLKQQYRFVPSKHKDCYLVYI 263
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + T +VF + + L +L L +P++ M+Q +RL L++F+ + ++L
Sbjct: 264 LTEMSNSTAMVFTRTCDATSFLALVLRNLGLRAIPINGHMSQPKRLGALNKFKARECNVL 323
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ TDVA+RGLDIP ++ VI+Y VP S+ YIHR GRTARA G+ + L+ E+ Y++
Sbjct: 324 ICTDVASRGLDIPSVDMVINYDVPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYLQ 383
Query: 1192 MFNSLEKKVDLPDFPI-DESVLSLIKKRIDLAKSIEY 1227
+ N + KK LP+FP +E VL L+ + ID AK I +
Sbjct: 384 IENLIGKK--LPEFPAQEEEVLMLLDRVID-AKRISH 417
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 139/498 (27%), Positives = 211/498 (42%), Gaps = 150/498 (30%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I + ++ A G+K PTKIQ +P AL KD++G A+TGSGKT AF +PIL ++
Sbjct: 31 LGICDQLVEACDSLGWKNPTKIQVEAVPHALEG-KDLIGLAQTGSGKTGAFALPILQALL 89
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
E +K+ +A +L+PTRELAIQ+
Sbjct: 90 -----------------------------------ESSQKSVQPFFACVLSPTRELAIQI 114
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G ++ +VGG+ +Q IL K PHI+VATPGRL + L + L
Sbjct: 115 AEQFEALGSGIGLRCGVLVGGVDIVQQTLILAKRPHIVVATPGRLLD--HLSNTKGFSLR 172
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR++ E + LD E+ N++ R
Sbjct: 173 TLKYLVLDEADRLLNE----EFEKSLD---------------------EILNVIPR---- 203
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+T++FSAT+T KKV K+LQ +++P ++
Sbjct: 204 ----DRKTYLFSATMT----------------KKV-------KKLQRAC-LRNPVKIEAA 235
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K TL + KD YL Y + + T +
Sbjct: 236 SKYSTVDTLKQQYRFVPSKHKDCYLVYILTEMSNST---------------------AMV 274
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
T+T C++ S L +L L +P++
Sbjct: 275 FTRT-------------------------------CDATSF---LALVLRNLGLRAIPIN 300
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M+Q +RL L++F+ + ++L+ TDVA+RGLDIP ++ VI+Y VP S+ YIHR GRT
Sbjct: 301 GHMSQPKRLGALNKFKARECNVLICTDVASRGLDIPSVDMVINYDVPSNSKDYIHRVGRT 360
Query: 636 ARANNEGLTVVLIESDEI 653
ARA G+ + L+ E+
Sbjct: 361 ARAGRSGVAISLVNQYEL 378
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A +L+PTRELAIQ+ G ++ +VGG+ +Q IL K PHI+VATPG L
Sbjct: 101 ACVLSPTRELAIQIAEQFEALGSGIGLRCGVLVGGVDIVQQTLILAKRPHIVVATPGRL 159
Score = 49.3 bits (116), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPI-DESVLSLIKKR 1297
+++HR GRTARA G+ + L+ E+ Y+++ N + KK LP+FP +E VL L+ +
Sbjct: 352 DYIHRVGRTARAGRSGVAISLVNQYELEWYLQIENLIGKK--LPEFPAQEEEVLMLLDRV 409
Query: 1298 IDLAKSIEY 1306
ID AK I +
Sbjct: 410 ID-AKRISH 417
>gi|156548270|ref|XP_001601432.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Nasonia
vitripennis]
Length = 460
Score = 215 bits (548), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 152/478 (31%), Positives = 243/478 (50%), Gaps = 81/478 (16%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
D N E++ W I +++ +A +K PTKIQ +P + KD++G AET
Sbjct: 17 DEKNTENL-----TWKDLGIVDSLCQACEDLKWKAPTKIQREAIPLTIQG-KDVIGLAET 70
Query: 816 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 875
GSGKT AF +PIL + LENP
Sbjct: 71 GSGKTAAFALPILQAL---LENP------------------------------------Q 91
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
+ +ALIL PTRELA Q+ G VK +VGGM Q +L K PHI++ATPG
Sbjct: 92 RYFALILTPTRELAFQISEQFEALGASIGVKCVVIVGGMDMMTQSLMLAKKPHIIIATPG 151
Query: 936 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFV 994
RL + ++ F+L L +LV+DE DR++ E+ IL RV E R+T +
Sbjct: 152 RLVDHLENTKGFNLRSL---KFLVMDEADRILNMDFEVEVDKIL-RVIPRE----RRTLL 203
Query: 995 FSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 1054
FSAT+T KKV K ++R ++++P V+++ K + L
Sbjct: 204 FSATMT----------------KKVQK----LQRA----SLQNPVKVEVSTKYQTVEKLQ 239
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
+ + KD YL + + + G + ++FC++ ++ R LL L +PLH M+Q
Sbjct: 240 QYYVFIPVKFKDVYLVHILNELSGNSFMIFCSTCNNTMRTALLLRSLGFMAVPLHGQMSQ 299
Query: 1114 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
+R+ L +F+ +N SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA
Sbjct: 300 NKRIAALTKFKAKNRSILISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGR 359
Query: 1174 EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
G+++ + ++ LY ++ + K+ LP + +E + ++++R+ A+ + +E K
Sbjct: 360 SGISVTFVTQYDVELYQRIEQLIGKQ--LPIYKTEEQEVMVLQERVAEAQRMVKMEMK 415
Score = 172 bits (437), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 145/518 (27%), Positives = 217/518 (41%), Gaps = 161/518 (31%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
D N E++ W I +++ +A +K PTKIQ +P + KD++G AET
Sbjct: 17 DEKNTENL-----TWKDLGIVDSLCQACEDLKWKAPTKIQREAIPLTIQG-KDVIGLAET 70
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
GSGKT AF +PIL + LENP
Sbjct: 71 GSGKTAAFALPILQAL---LENP------------------------------------Q 91
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
+ +ALIL PTRELA Q+ G VK +VGGM Q +L K PHI++ATPG
Sbjct: 92 RYFALILTPTRELAFQISEQFEALGASIGVKCVVIVGGMDMMTQSLMLAKKPHIIIATPG 151
Query: 319 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
RL + ++ F+L L +LV+DE DR++ E+ IL + PR+
Sbjct: 152 RLVDHLENTKGFNLRSL---KFLVMDEADRILNMDFEVEVDKILRVI-------PRE--- 198
Query: 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 437
R+T +FSAT+T KKV K +
Sbjct: 199 -----------------------RRTLLFSATMT----------------KKVQK----L 215
Query: 438 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497
+R ++++P V+++ K + L + + KD YL + + + G +
Sbjct: 216 QR----ASLQNPVKVEVSTKYQTVEKLQQYYVFIPVKFKDVYLVHILNELSGNSFM---- 267
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 557
I C CN +
Sbjct: 268 ---------------------------IFCST---------------------CN---NT 276
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617
R LL L +PLH M+Q +R+ L +F+ +N SIL++TDVA+RGLDIP ++ VI
Sbjct: 277 MRTALLLRSLGFMAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDVVI 336
Query: 618 HYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
++ +P S+ YIHR GRTARA G++V + ++ L
Sbjct: 337 NFDIPTHSKDYIHRVGRTARAGRSGISVTFVTQYDVEL 374
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ G VK +VGGM Q +L K PHI++ATPG
Sbjct: 93 YFALILTPTRELAFQISEQFEALGASIGVKCVVIVGGMDMMTQSLMLAKKPHIIIATPGR 152
Query: 1414 LSLKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENA 1468
L +++LE+ N R +L D MD ++ + +++ R
Sbjct: 153 L----------VDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTL 202
Query: 1469 LMSKALVSKRKELQ 1482
L S + K ++LQ
Sbjct: 203 LFSATMTKKVQKLQ 216
>gi|189205104|ref|XP_001938887.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985986|gb|EDU51474.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 517
Score = 215 bits (547), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 147/467 (31%), Positives = 233/467 (49%), Gaps = 80/467 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E + A FK PT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 89 FADLGVREELCDACENLKFKNPTPIQTQAIPLALEGR-DVIGLAETGSGKTAAFVLPILQ 147
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ LE P L+ LILAPTRELA
Sbjct: 148 SL---LEKP------------------------------------QPLFGLILAPTRELA 168
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ + G VK A +VGGM Q L+K PHI+VATPGRL + ++ F L
Sbjct: 169 YQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDHLENTKGFSL 228
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L Y+V+DE DR+++ P +LD++ + R T++FSAT+
Sbjct: 229 KHL---KYMVLDEADRLLDLDFGP----VLDKILKVLPREGRHTYLFSATM--------- 272
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG-ITKTLTESKILCKHDEKDS 1067
S KV S++R +++P V ++ + TL + H KD
Sbjct: 273 -------SSKVE----SLQRAA----LQNPVRVSISSSSHQVVSTLLQRYAFIPHKYKDL 317
Query: 1068 YLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
YL + + + HP T++F +++ +R+ LL L +PLH ++Q RL L++F+
Sbjct: 318 YLVHLLNDNIGHP--TIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFK 375
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
++ IL+ATDVAARGLDIP ++ ++++ +P S+ Y+HR GRTARA G + +
Sbjct: 376 SKSRDILVATDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQY 435
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ +++++ ++L KK+ F DE+++ + R+ A+ + E K
Sbjct: 436 DLEIWLRIEHALGKKIPEQTFDKDEAMVYM--DRVSEAQRVAIREMK 480
Score = 172 bits (437), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 144/498 (28%), Positives = 208/498 (41%), Gaps = 156/498 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E + A FK PT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 89 FADLGVREELCDACENLKFKNPTPIQTQAIPLALEGR-DVIGLAETGSGKTAAFVLPILQ 147
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ LE P L+ LILAPTRELA
Sbjct: 148 SL---LEKP------------------------------------QPLFGLILAPTRELA 168
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ + G VK A +VGGM Q L+K PHI+VATPGRL + ++ F L
Sbjct: 169 YQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDHLENTKGFSL 228
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L Y+V+DE DR+++ P L IL + PR+
Sbjct: 229 KHL---KYMVLDEADRLLDLDFGPVLDKILKVL-------PREG---------------- 262
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R T++FSAT+ S KV S++R +++P
Sbjct: 263 ---------RHTYLFSATM----------------SSKVE----SLQRAA----LQNPVR 289
Query: 452 VDLTEKIG-ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
V ++ + TL + H KD YL + + NI P I+
Sbjct: 290 VSISSSSHQVVSTLLQRYAFIPHKYKDLYLVHLLND--------------NIGHPTII-- 333
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
T+T+ E+ +R+ LL L
Sbjct: 334 -----FTRTVNET----------------------------------QRIAVLLRALGFG 354
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+PLH ++Q RL L++F+ ++ IL+ATDVAARGLDIP ++ ++++ +P S+ Y+H
Sbjct: 355 AIPLHGQLSQSARLGALNKFKSKSRDILVATDVAARGLDIPAVDLIVNFDLPSDSQTYVH 414
Query: 631 RSGRTARANNEGLTVVLI 648
R GRTARA G V +
Sbjct: 415 RVGRTARAGKSGKAVSFV 432
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 36/59 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LILAPTRELA Q+ + G VK A +VGGM Q L+K PHI+VATPG L
Sbjct: 158 GLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRL 216
>gi|198413641|ref|XP_002129468.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
isoform 1 [Ciona intestinalis]
Length = 449
Score = 215 bits (547), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 223/449 (49%), Gaps = 80/449 (17%)
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G+K P+KIQ +P AL D++G AETGSGKT AF IP+L + LENP
Sbjct: 39 GWKKPSKIQEEAIPVALQG-NDVIGLAETGSGKTGAFCIPVLQAL---LENP-------- 86
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
+L+AL+L PTRELA Q++ G +K
Sbjct: 87 ----------------------------QRLFALVLTPTRELAFQIEEQFKALGSAIGIK 118
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETD 963
VVGG+ Q IL K PH++VATPGRL + H T+ L I +LV+DE D
Sbjct: 119 TCVVVGGVDMMGQQIILAKKPHVVVATPGRLVD-----HLEKTKGFTLRSIKFLVLDEAD 173
Query: 964 RMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD 1023
R++ EL IL + + R+TF+FSAT+T K KK+ +
Sbjct: 174 RILNMDFESELDTILKVI-----PRERRTFLFSATMT-------------GKVKKLQRA- 214
Query: 1024 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV- 1082
+ P + K L + + +KD YL + + G ++
Sbjct: 215 ----------ALTKPVKCAVNNKYHTVDKLFQYYLFLPSKDKDCYLAAVVNELAGNAMII 264
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
FC + ++ +R +L L S +PLH M+Q +RL L++F+ SIL+ATDVA+RGLD
Sbjct: 265 FCGTCANTQRTALILRNLGISAVPLHGQMSQAKRLGALNKFKSATKSILVATDVASRGLD 324
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
IP ++ VI+ VP S+ YIHR GRTARA G ++ + ++ LY ++ + KK L
Sbjct: 325 IPHVDVVINMDVPARSKDYIHRVGRTARAGRFGKSVTFVTQYDVELYQRIEELIGKK--L 382
Query: 1203 PDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
P++ ++ + + ++++R+ A+ + LE K
Sbjct: 383 PEYEMEHNEVKVLQERVAEAQRLARLEMK 411
Score = 110 bits (276), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 111/249 (44%), Gaps = 81/249 (32%)
Query: 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229
G+K P+KIQ +P AL D++G AETGSGKT AF IP+L + LENP
Sbjct: 39 GWKKPSKIQEEAIPVALQG-NDVIGLAETGSGKTGAFCIPVLQAL---LENP-------- 86
Query: 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 289
+L+AL+L PTRELA Q++ G +K
Sbjct: 87 ----------------------------QRLFALVLTPTRELAFQIEEQFKALGSAIGIK 118
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETD 346
VVGG+ Q IL K PH++VATPGRL + H T+ L I +LV+DE D
Sbjct: 119 TCVVVGGVDMMGQQIILAKKPHVVVATPGRLVD-----HLEKTKGFTLRSIKFLVLDEAD 173
Query: 347 RMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406
R++ EL IL + PR+ R+TF+F
Sbjct: 174 RILNMDFESELDTILKVI-------PRE--------------------------RRTFLF 200
Query: 407 SATLTHSLK 415
SAT+T +K
Sbjct: 201 SATMTGKVK 209
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
Query: 531 EKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 589
+KD YL + + G ++ FC + ++ +R +L L S +PLH M+Q +RL L++
Sbjct: 245 DKDCYLAAVVNELAGNAMIIFCGTCANTQRTALILRNLGISAVPLHGQMSQAKRLGALNK 304
Query: 590 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIE 649
F+ SIL+ATDVA+RGLDIP ++ VI+ VP S+ YIHR GRTARA G +V +
Sbjct: 305 FKSATKSILVATDVASRGLDIPHVDVVINMDVPARSKDYIHRVGRTARAGRFGKSVTFVT 364
Query: 650 SDEIPL 655
++ L
Sbjct: 365 QYDVEL 370
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q++ G +K VVGG+ Q IL K PH++VATPG L
Sbjct: 91 ALVLTPTRELAFQIEEQFKALGSAIGIKTCVVVGGVDMMGQQIILAKKPHVVVATPGRL 149
Score = 42.0 bits (97), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 1236 RPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1295
R +++HR GRTARA G ++ + ++ LY ++ + KK LP++ ++ + + +++
Sbjct: 339 RSKDYIHRVGRTARAGRFGKSVTFVTQYDVELYQRIEELIGKK--LPEYEMEHNEVKVLQ 396
Query: 1296 KRIDLAKSIEYLESK 1310
+R+ A+ + LE K
Sbjct: 397 ERVAEAQRLARLEMK 411
>gi|167526114|ref|XP_001747391.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774226|gb|EDQ87858.1| predicted protein [Monosiga brevicollis MX1]
Length = 504
Score = 215 bits (547), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 146/456 (32%), Positives = 230/456 (50%), Gaps = 75/456 (16%)
Query: 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
A + + E + A F PT+IQ +P AL KD++G AETGSGKT AF +P+
Sbjct: 81 ATFADLGLAEVLCEACATLKFTKPTEIQRRSIPLALQG-KDVIGLAETGSGKTAAFALPV 139
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L ++ K + + +AL+LAPTRE
Sbjct: 140 LHDLL-------------------------------------ATKGKKEFFALVLAPTRE 162
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHF 946
LA Q++ G +K A +VGG+ Q L K PH+L+ATPGRL + ++ F
Sbjct: 163 LAFQIRQTFNALGSPIGLKSAVLVGGIDMTTQAIALAKKPHVLIATPGRLVDHLENTKGF 222
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
HL L YL++DE DRM+ + EL IL + + R+TF+FSAT+T
Sbjct: 223 HLKAL---RYLIMDEADRMLNMDYEKELDKILAVI-----PRERRTFLFSATMT------ 268
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
SK K+ + +++ P V++ K TL + + KD
Sbjct: 269 -------SKVGKLQRA-----------SLRDPVKVEVNSKYKTVDTLIQRYMFVPQKFKD 310
Query: 1067 SYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
YL Y + Q G + ++FC++ ++V + T +L L + LH M+Q +RL L +F
Sbjct: 311 CYLIYLMNQLRGNSFIIFCSTCNNVMKATLVLRDLGFDAVCLHGQMSQPKRLGALAKFTS 370
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
Q+++IL+ATDVA+RGLDIP ++ V++Y +P S+ YIHR GRTARA G + + +
Sbjct: 371 QSHTILVATDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGHAITIATQYD 430
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDES-VLSLIKKRID 1220
+ L+ ++ + KK++ ++P + S VL L+++ D
Sbjct: 431 VELFQRIEALIGKKME--EYPTESSQVLQLLERVSD 464
Score = 180 bits (457), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 142/506 (28%), Positives = 213/506 (42%), Gaps = 154/506 (30%)
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
A + + E + A F PT+IQ +P AL KD++G AETGSGKT AF +P+
Sbjct: 81 ATFADLGLAEVLCEACATLKFTKPTEIQRRSIPLALQG-KDVIGLAETGSGKTAAFALPV 139
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L ++ K + + +AL+LAPTRE
Sbjct: 140 LHDLL-------------------------------------ATKGKKEFFALVLAPTRE 162
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHF 329
LA Q++ G +K A +VGG+ Q L K PH+L+ATPGRL + ++ F
Sbjct: 163 LAFQIRQTFNALGSPIGLKSAVLVGGIDMTTQAIALAKKPHVLIATPGRLVDHLENTKGF 222
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
HL L YL++DE DRM+ + EL IL + PR+
Sbjct: 223 HLKAL---RYLIMDEADRMLNMDYEKELDKILAVI-------PRE--------------- 257
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
R+TF+FSAT+T SK K+ + +++ P
Sbjct: 258 -----------RRTFLFSATMT-------------SKVGKLQRA-----------SLRDP 282
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
V++ K TL + + KD YL Y + Q G +
Sbjct: 283 VKVEVNSKYKTVDTLIQRYMFVPQKFKDCYLIYLMNQLRGNS------------------ 324
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
FI+ FC++ ++V + T +L L
Sbjct: 325 -----------------------------FII--------FCSTCNNVMKATLVLRDLGF 347
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+ LH M+Q +RL L +F Q+++IL+ATDVA+RGLDIP ++ V++Y +P S+ YI
Sbjct: 348 DAVCLHGQMSQPKRLGALAKFTSQSHTILVATDVASRGLDIPHVDVVVNYDIPTHSKDYI 407
Query: 630 HRSGRTARANNEGLTVVLIESDEIPL 655
HR GRTARA G + + ++ L
Sbjct: 408 HRVGRTARAGRSGHAITIATQYDVEL 433
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+LAPTRELA Q++ G +K A +VGG+ Q L K PH+L+ATPG
Sbjct: 152 FFALVLAPTRELAFQIRQTFNALGSPIGLKSAVLVGGIDMTTQAIALAKKPHVLIATPGR 211
Query: 1414 L 1414
L
Sbjct: 212 L 212
>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|160358660|sp|A7EML8.1|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 482
Score = 215 bits (547), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 220/429 (51%), Gaps = 73/429 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I +++ A G+K PT IQ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 61 LGIVDSLCEACDTLGYKAPTPIQRESIPLALQGR-DLIGLAETGSGKTAAFALPILQSLL 119
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K + L+ L+LAPTRELA Q+
Sbjct: 120 DKPQ---------------------------------------PLFGLVLAPTRELAYQI 140
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G VK A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 141 SQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPHIIVATPGRLLDHLE--NTKGFSLR 198
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ YLV+DE DR+++ P ILD++ + + R+T++FSAT++ ++
Sbjct: 199 SLKYLVMDEADRLLDLDFGP----ILDKI-LKVLPRERRTYLFSATISSKVE-------- 245
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYY 1071
S++R ++K P V ++ K TL ++ I KD+YL Y
Sbjct: 246 ------------SLQRA----SLKDPLRVSISSNKYQTVSTLIQNYIFIPLVHKDTYLIY 289
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G++ ++F +++ +R+ LL L +PLH ++Q RL L++FR + I
Sbjct: 290 LLNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREI 349
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L+ATDVAARGLDIP ++ V++Y +P+ S+ YIHR GRTARA G + + ++ +++
Sbjct: 350 LVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDVEIWM 409
Query: 1191 KMFNSLEKK 1199
++ +L KK
Sbjct: 410 RIEAALGKK 418
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 143/515 (27%), Positives = 217/515 (42%), Gaps = 155/515 (30%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I +++ A G+K PT IQ +P AL R D++G AETGSGKT AF +PIL ++
Sbjct: 61 LGIVDSLCEACDTLGYKAPTPIQRESIPLALQGR-DLIGLAETGSGKTAAFALPILQSLL 119
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K + L+ L+LAPTRELA Q+
Sbjct: 120 DKPQ---------------------------------------PLFGLVLAPTRELAYQI 140
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G VK A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 141 SQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPHIIVATPGRLLDHLE--NTKGFSLR 198
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ P L IL + PR+
Sbjct: 199 SLKYLVMDEADRLLDLDFGPILDKILKVL-------PRE--------------------- 230
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+T++FSAT++ ++ S++R ++K P V ++
Sbjct: 231 -----RRTYLFSATISSKVE--------------------SLQR----ASLKDPLRVSIS 261
Query: 456 E-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
K TL ++ I KD+YL Y + + G++ I
Sbjct: 262 SNKYQTVSTLIQNYIFIPLVHKDTYLIYLLNEFAGQS---------------------AI 300
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
T+T+ E+ +R+ LL L +PL
Sbjct: 301 IFTRTVNET----------------------------------QRIAILLRTLGFGAIPL 326
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H ++Q RL L++FR + IL+ATDVAARGLDIP ++ V++Y +P+ S+ YIHR GR
Sbjct: 327 HGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGR 386
Query: 635 TARANNEGLTVVLIESDEIPLKTKFNLQEEENNEE 669
TARA G + + ++ + + + EE
Sbjct: 387 TARAGKSGHAISFVTQYDVEIWMRIEAALGKKQEE 421
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G VK A +VGGM Q L K PHI+VATPG L
Sbjct: 127 GLVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPHIIVATPGRL 185
>gi|312370859|gb|EFR19169.1| hypothetical protein AND_22947 [Anopheles darlingi]
Length = 490
Score = 215 bits (547), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 148/461 (32%), Positives = 229/461 (49%), Gaps = 76/461 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ +T+ +A +K P+KIQ +P AL KDI+G AETGSGKT AF +PIL +
Sbjct: 53 LGLVDTLCQACRALKWKVPSKIQREAIPLALNG-KDIIGLAETGSGKTAAFALPILQAL- 110
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
L+NP + +A++L PTRELA Q+
Sbjct: 111 --LDNP------------------------------------QRYFAVVLTPTRELAYQI 132
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G VK VVGGM Q L + PHI++ATPGRL + ++ F L L
Sbjct: 133 SEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPHIIIATPGRLVDHLENTKGFGLKAL 192
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL RV E R+TF+FSAT+T
Sbjct: 193 ---KYLVMDEADRILNMDFEVEVNKIL-RVIPRE----RRTFLFSATMT----------- 233
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
K KK+ + +++ P V+++ K L + I KD YL +
Sbjct: 234 --KKVKKLERA-----------SLRDPVKVEVSSKYQTVDKLLQYYIFIPAKYKDVYLVH 280
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ R +L L + +PLH M Q +RL L++F+ Q I
Sbjct: 281 ILNELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQTRQI 340
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L++TDVA+RGLDIP ++ V++ +P S+ YIHR GRTARA G + + ++ LY
Sbjct: 341 LISTDVASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQ 400
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ + L KK LP++ +E + +++R+ A+ +E K
Sbjct: 401 RIEHLLSKK--LPEYKCEEDEVMALQERVAEAQRTARMEQK 439
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 155/592 (26%), Positives = 243/592 (41%), Gaps = 162/592 (27%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ +T+ +A +K P+KIQ +P AL KDI+G AETGSGKT AF +PIL +
Sbjct: 53 LGLVDTLCQACRALKWKVPSKIQREAIPLALNG-KDIIGLAETGSGKTAAFALPILQAL- 110
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
L+NP + +A++L PTRELA Q+
Sbjct: 111 --LDNP------------------------------------QRYFAVVLTPTRELAYQI 132
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G VK VVGGM Q L + PHI++ATPGRL + ++ F L L
Sbjct: 133 SEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPHIIIATPGRLVDHLENTKGFGLKAL 192
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL RV PR+
Sbjct: 193 ---KYLVMDEADRILNMDFEVEVNKIL-RVI------PRE-------------------- 222
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T K KK+ + +++ P V++
Sbjct: 223 ------RRTFLFSATMT-------------KKVKKLERA-----------SLRDPVKVEV 252
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K L + I KD YL + + + G
Sbjct: 253 SSKYQTVDKLLQYYIFIPAKYKDVYLVHILNELAG------------------------- 287
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ R +L L + +PL
Sbjct: 288 ------------------NSFMIF------------CSTCNNTVRTALMLRALGLAAVPL 317
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M Q +RL L++F+ Q IL++TDVA+RGLDIP ++ V++ +P S+ YIHR GR
Sbjct: 318 HGQMTQNKRLAALNKFKSQTRQILISTDVASRGLDIPHVDVVLNLDIPMHSKDYIHRVGR 377
Query: 635 TARANNEGLTVVLIESDEIPLKTK----FNLQEEENNEEEERAEADKEKTEDINVTVSSK 690
TARA G + + ++ L + + + E EE+ A +E+ + T +
Sbjct: 378 TARAGRAGQAITFVTQYDVELYQRIEHLLSKKLPEYKCEEDEVMALQERVAEAQRTARME 437
Query: 691 KKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKK 742
+K ++ ++ + +A DD + TE+ K KQ K+K
Sbjct: 438 QKDIEERKASKGAKGKRGAATAAGSDD--DDTEQFNGARKRLKTGKQGNKRK 487
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A++L PTRELA Q+ G VK VVGGM Q L + PHI++ATPG
Sbjct: 117 YFAVVLTPTRELAYQISEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPHIIIATPGR 176
Query: 1414 L 1414
L
Sbjct: 177 L 177
>gi|242003922|ref|XP_002422909.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212505802|gb|EEB10171.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 458
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 223/446 (50%), Gaps = 76/446 (17%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
+K PTKIQ +P L R D++G AETGSGKT AF +PIL + L+NP
Sbjct: 42 WKAPTKIQKEAIPLTLQGR-DVIGLAETGSGKTGAFALPILQAL---LQNP--------- 88
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 907
+ +ALIL PTRELA Q+ G VK
Sbjct: 89 ---------------------------QRYFALILTPTRELAFQISEQFQALGSKIGVKT 121
Query: 908 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMI 966
A +VGGM Q +L K PH+++ATPGRL + ++ F+L L +LV+DE DR++
Sbjct: 122 AVIVGGMDMMSQALLLAKKPHVIIATPGRLVDHLENTKGFNLKAL---KFLVMDEADRIL 178
Query: 967 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026
E+ IL + + R+T +FSAT+T ++ K ++ S DP
Sbjct: 179 NMDFEVEVDKILKVI-----PRERRTLLFSATMTQKVQ----------KLQRASLHDP-- 221
Query: 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCN 1085
+K V+++ K L + + KD YL I + G T ++FC
Sbjct: 222 --------VK----VEVSSKYQTVDKLQQYYLFIPVKFKDVYLVSIINEMAGNTFMIFCG 269
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
+ + R LL L + +PLH M+Q +RL L +FR +N SIL++TDVA+RGLDIP
Sbjct: 270 TCHNTLRTALLLRQLGFTAIPLHGQMSQNKRLGALTKFRAKNRSILISTDVASRGLDIPH 329
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
++ VI++ +P S+ YIHR GRTARA G + + ++ LY ++ + KK LP F
Sbjct: 330 VDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEQLIGKK--LPLF 387
Query: 1206 PIDESVLSLIKKRIDLAKSIEYLESK 1231
I+E + +++R+ A+ +E K
Sbjct: 388 KIEEDEVMTLQERVAEAQRNSKMEMK 413
Score = 117 bits (292), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 16/225 (7%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++Q L ++ P V+++ K L + + KD YL I + G T
Sbjct: 205 TMTQKVQKLQRASLHDPVKVEVSSKYQTVDKLQQYYLFIPVKFKDVYLVSIINEMAGNTF 264
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC + + R LL L + +PLH M+Q +RL L +FR +N SIL++TDVA+RG
Sbjct: 265 MIFCGTCHNTLRTALLLRQLGFTAIPLHGQMSQNKRLGALTKFRAKNRSILISTDVASRG 324
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK--------- 658
LDIP ++ VI++ +P S+ YIHR GRTARA G + + ++ L +
Sbjct: 325 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEQLIGKKL 384
Query: 659 --FNLQEEENNEEEER-AEADK-EKTEDINVTVSSKKKKLKRKQN 699
F ++E+E +ER AEA + K E +++ KK +KRK +
Sbjct: 385 PLFKIEEDEVMTLQERVAEAQRNSKMEMKHISEMKGKKGIKRKTD 429
Score = 104 bits (260), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 109/246 (44%), Gaps = 77/246 (31%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
+K PTKIQ +P L R D++G AETGSGKT AF +PIL + L+NP
Sbjct: 42 WKAPTKIQKEAIPLTLQGR-DVIGLAETGSGKTGAFALPILQAL---LQNP--------- 88
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 290
+ +ALIL PTRELA Q+ G VK
Sbjct: 89 ---------------------------QRYFALILTPTRELAFQISEQFQALGSKIGVKT 121
Query: 291 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMI 349
A +VGGM Q +L K PH+++ATPGRL + ++ F+L L +LV+DE DR++
Sbjct: 122 AVIVGGMDMMSQALLLAKKPHVIIATPGRLVDHLENTKGFNLKAL---KFLVMDEADRIL 178
Query: 350 ESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
E+ IL + PR+ R+T +FSAT
Sbjct: 179 NMDFEVEVDKILKVI-------PRE--------------------------RRTLLFSAT 205
Query: 410 LTHSLK 415
+T ++
Sbjct: 206 MTQKVQ 211
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ G VK A +VGGM Q +L K PH+++ATPG
Sbjct: 91 YFALILTPTRELAFQISEQFQALGSKIGVKTAVIVGGMDMMSQALLLAKKPHVIIATPGR 150
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
L + K +L K++++L + D L +MD ++ + +++ R
Sbjct: 151 LVDHLENTKGFNL-KALKFLVM----DEADRIL-----NMDFEVEVDKILKVIPRERRTL 200
Query: 1469 LMSKALVSKRKELQ 1482
L S + K ++LQ
Sbjct: 201 LFSATMTQKVQKLQ 214
>gi|388856716|emb|CCF49676.1| probable DEAD box protein (putative RNA helicase) [Ustilago hordei]
Length = 556
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 229/448 (51%), Gaps = 77/448 (17%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
IP+ I+ A GFK PT IQ +P AL +R D++G A+TGSGKT AF IPIL +
Sbjct: 117 IPQ-IVEACTNMGFKHPTPIQVKSIPEALQSR-DVIGLAQTGSGKTAAFTIPILQAL--- 171
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+NP +A +LAPTRELA Q+
Sbjct: 172 WDNP------------------------------------KPFFACVLAPTRELAYQISQ 195
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
+ G V+ A +VGGM Q L+K PH++VATPGRL + ++ + L +
Sbjct: 196 QVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQDHLE--NTKGFSLRGL 253
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
YLV+DE DR+++ P + +L + + R+T +FSAT+T
Sbjct: 254 QYLVMDEADRLLDMDFGPIIDKLLQSI-----PRERRTMLFSATMT-------------- 294
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
KV+K ++R ++K+P V++ K TL + + KD+YL +
Sbjct: 295 --TKVAK----LQRA----SLKNPVRVEVDTKYTTVSTLKQHYLFMPFAHKDTYLVHLAN 344
Query: 1075 QHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+ G ++ VF ++ +RL+ LL +L +PLH ++Q+ RL L++F+ SIL+A
Sbjct: 345 EQAGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVA 404
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVA+RGLDIP ++ V++Y +P S+ YIHR GRTARA G ++ L+ ++ L ++
Sbjct: 405 TDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRIE 464
Query: 1194 NSLEKKVDLPDFPI--DESVLSLIKKRI 1219
+ K + +FP D+ + L+ +R+
Sbjct: 465 AVIALK--MTEFPGGNDKEAVMLLSERV 490
Score = 184 bits (466), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 144/498 (28%), Positives = 218/498 (43%), Gaps = 155/498 (31%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
IP+ I+ A GFK PT IQ +P AL +R D++G A+TGSGKT AF IPIL +
Sbjct: 117 IPQ-IVEACTNMGFKHPTPIQVKSIPEALQSR-DVIGLAQTGSGKTAAFTIPILQAL--- 171
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+NP +A +LAPTRELA Q+
Sbjct: 172 WDNP------------------------------------KPFFACVLAPTRELAYQISQ 195
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
+ G V+ A +VGGM Q L+K PH++VATPGRL + ++ + L +
Sbjct: 196 QVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQDHLE--NTKGFSLRGL 253
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
YLV+DE DR+++ P + +L + PR+
Sbjct: 254 QYLVMDEADRLLDMDFGPIIDKLLQSI-------PRE----------------------- 283
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
R+T +FSAT+T KV+K ++R ++K+P V++ K
Sbjct: 284 ---RRTMLFSATMT----------------TKVAK----LQR----ASLKNPVRVEVDTK 316
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
TL + + KD+YL + + G ++ I T
Sbjct: 317 YTTVSTLKQHYLFMPFAHKDTYLVHLANEQAGHSI---------------------IVFT 355
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+T+ +S +RL+ LL +L +PLH
Sbjct: 356 RTVHDS----------------------------------QRLSILLRLLGFPAIPLHGQ 381
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
++Q+ RL L++F+ SIL+ATDVA+RGLDIP ++ V++Y +P S+ YIHR GRTAR
Sbjct: 382 LSQQARLGALNKFKTGGRSILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTAR 441
Query: 638 ANNEGLTVVLIESDEIPL 655
A G +V L+ ++ L
Sbjct: 442 AGRSGRSVTLVTQYDVEL 459
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 25/146 (17%)
Query: 1350 LRYSWD------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
L+ WD A +LAPTRELA Q+ + G V+ A +VGGM Q L+K
Sbjct: 168 LQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKR 227
Query: 1404 PHILVATPGAL-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI--IIDDEN 1456
PH++VATPG L + K L + ++YL + D L DMD IID
Sbjct: 228 PHVIVATPGRLQDHLENTKGFSL-RGLQYLV----MDEADRLL-----DMDFGPIID--K 275
Query: 1457 LIQPKANSRENALMSKALVSKRKELQ 1482
L+Q R L S + +K +LQ
Sbjct: 276 LLQSIPRERRTMLFSATMTTKVAKLQ 301
>gi|406603210|emb|CCH45247.1| ATP-dependent rRNA helicase RRP3 [Wickerhamomyces ciferrii]
Length = 488
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 135/419 (32%), Positives = 211/419 (50%), Gaps = 73/419 (17%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
IPE ++ A F PT IQ+ +P + R D++G A+TGSGKT AF IPIL +
Sbjct: 82 IPE-LLEACQALKFDKPTPIQAEAIPHGIEGR-DLIGLAQTGSGKTAAFAIPILQALWY- 138
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+ +A +LAPTRELA Q+++
Sbjct: 139 --------------------------------------AQTPYFATVLAPTRELAYQIKD 160
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
G ++ C+VGGM +Q R L + PH++VATPGRL + L H L +
Sbjct: 161 TFDALGSGMGLRSVCIVGGMDMMEQARDLMRKPHVIVATPGRLMD--HLEHLKGFSLRAL 218
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
+LV+DE DR+++ P L I + + R T++FSAT+T+
Sbjct: 219 KFLVMDEADRLLDMEFGPVLDKIFKVI-----PRERTTYLFSATMTNK------------ 261
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
I +LQ ++ +P V ++++ TL +S ++ +K++YL Y +
Sbjct: 262 -----------IDKLQRA-SLTNPVKVSVSDRYSTVDTLIQSMMIVPDGQKNTYLIYLLN 309
Query: 1075 QHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
Q G++++ F + + +R L +L S +PLH + Q QRL L+RF+ +IL+A
Sbjct: 310 QFEGKSIIIFTRTCAHSQRTALLSRILGFSAVPLHGQLTQSQRLSALNRFKSGKTNILVA 369
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
TDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L I++
Sbjct: 370 TDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQYDLELLIRI 428
Score = 186 bits (472), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 214/498 (42%), Gaps = 155/498 (31%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
IPE ++ A F PT IQ+ +P + R D++G A+TGSGKT AF IPIL +
Sbjct: 82 IPE-LLEACQALKFDKPTPIQAEAIPHGIEGR-DLIGLAQTGSGKTAAFAIPILQALWY- 138
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+ +A +LAPTRELA Q+++
Sbjct: 139 --------------------------------------AQTPYFATVLAPTRELAYQIKD 160
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
G ++ C+VGGM +Q R L + PH++VATPGRL + L H L +
Sbjct: 161 TFDALGSGMGLRSVCIVGGMDMMEQARDLMRKPHVIVATPGRLMD--HLEHLKGFSLRAL 218
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
+LV+DE DR+++ P L I + PR+
Sbjct: 219 KFLVMDEADRLLDMEFGPVLDKIFKVI-------PRE----------------------- 248
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
R T++FSAT+T+ I +LQ ++ +P V ++++
Sbjct: 249 ---RTTYLFSATMTN-----------------------KIDKLQR-ASLTNPVKVSVSDR 281
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
TL +S ++ +K++YL Y + Q G+++ I T
Sbjct: 282 YSTVDTLIQSMMIVPDGQKNTYLIYLLNQFEGKSI---------------------IIFT 320
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+T C H ++ + L R L F S +PLH
Sbjct: 321 RT-------CAHSQRTALL--------SRILGF-------------------SAVPLHGQ 346
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+ Q QRL L+RF+ +IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTAR
Sbjct: 347 LTQSQRLSALNRFKSGKTNILVATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTAR 406
Query: 638 ANNEGLTVVLIESDEIPL 655
A G +V L+ ++ L
Sbjct: 407 AGRSGKSVSLVTQYDLEL 424
Score = 60.1 bits (144), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A +LAPTRELA Q+++ G ++ C+VGGM +Q R L + PH++VATPG
Sbjct: 143 YFATVLAPTRELAYQIKDTFDALGSGMGLRSVCIVGGMDMMEQARDLMRKPHVIVATPGR 202
Query: 1414 L 1414
L
Sbjct: 203 L 203
>gi|169609619|ref|XP_001798228.1| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
gi|143462316|sp|Q0UK12.2|RRP3_PHANO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|160701880|gb|EAT84178.2| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
Length = 546
Score = 214 bits (546), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 233/465 (50%), Gaps = 76/465 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E + A G+KT T IQ+ +P AL A KDI+G AETGSGKT AF +PIL
Sbjct: 117 FADLGVREELCDACENLGYKTATPIQTESIPLAL-AGKDIIGLAETGSGKTAAFVLPILQ 175
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+++K + + LI+APTRELA
Sbjct: 176 ALLDKPQ---------------------------------------AYFGLIMAPTRELA 196
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ + G VK A +VGGM Q L+K PHI+VA+PGRL + ++ F L
Sbjct: 197 YQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASPGRLLDHLENTKGFSL 256
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L YLV+DE DR+++ + + LD++ R T++FSAT+
Sbjct: 257 KHL---KYLVLDEADRLLDL----DFGDSLDKIFKVLPRDDRHTYLFSATM--------- 300
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG-ITKTLTESKILCKHDEKDS 1067
S KV S++R +K+P V ++ + TL +S +L H KD
Sbjct: 301 -------SSKVE----SLQRAA----LKNPVRVSISSSSHQVVSTLLQSYMLIPHKYKDL 345
Query: 1068 YLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
YL + + + G T++F +++ +RL LL L LPLH ++Q RL L++F+ +
Sbjct: 346 YLIHLLNDNIGHATILFTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAK 405
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
IL+ATDVAARGLDIP ++ V+++ +P SE Y+HR GRTARA G + + ++
Sbjct: 406 ARDILVATDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDL 465
Query: 1187 PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ ++ ++L K+V P+ + + + +R+ A+ + E K
Sbjct: 466 EIFQRIEHALGKQV--PEEKVSRDEVMVYAERVGEAQRVAVREMK 508
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 145/498 (29%), Positives = 208/498 (41%), Gaps = 156/498 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E + A G+KT T IQ+ +P AL A KDI+G AETGSGKT AF +PIL
Sbjct: 117 FADLGVREELCDACENLGYKTATPIQTESIPLAL-AGKDIIGLAETGSGKTAAFVLPILQ 175
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+++K + + LI+APTRELA
Sbjct: 176 ALLDKPQ---------------------------------------AYFGLIMAPTRELA 196
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ + G VK A +VGGM Q L+K PHI+VA+PGRL + ++ F L
Sbjct: 197 YQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASPGRLLDHLENTKGFSL 256
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L YLV+DE DR+++ LD + LD+
Sbjct: 257 KHL---KYLVLDEADRLLD----------LD----------------------FGDSLDK 281
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
+ R T++FSAT+ S KV S++R +K+P
Sbjct: 282 IFKVLPRDDRHTYLFSATM----------------SSKVE----SLQRAA----LKNPVR 317
Query: 452 VDLTEKIG-ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
V ++ + TL +S +L H KD YL + L
Sbjct: 318 VSISSSSHQVVSTLLQSYMLIPHKYKDLYLIHL--------------------------L 351
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
+ IG L F +++ +RL LL L
Sbjct: 352 NDNIGHATIL-----------------------------FTRTVNETQRLAVLLRTLGFQ 382
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
LPLH ++Q RL L++F+ + IL+ATDVAARGLDIP ++ V+++ +P SE Y+H
Sbjct: 383 ALPLHGQLSQSNRLGALNKFKAKARDILVATDVAARGLDIPSVDLVVNFDLPHDSETYVH 442
Query: 631 RSGRTARANNEGLTVVLI 648
R GRTARA G V +
Sbjct: 443 RVGRTARAGKSGKAVSFV 460
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ LI+APTRELA Q+ + G VK A +VGGM Q L+K PHI+VA+PG
Sbjct: 183 AYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASPG 242
Query: 1413 AL 1414
L
Sbjct: 243 RL 244
>gi|66814184|ref|XP_641271.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
gi|74897202|sp|Q54VT4.1|DDX47_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx47; AltName:
Full=DEAD box protein 47
gi|60469306|gb|EAL67300.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
Length = 546
Score = 214 bits (546), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 219/448 (48%), Gaps = 74/448 (16%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
II A + GF P +IQ +P AL R DI+G A+TGSGKT AF IP+L + LE P
Sbjct: 130 IIDACNKLGFNKPKEIQRESIPWALKGR-DIIGLAQTGSGKTAAFVIPVLQKL---LEAP 185
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
L+ L LAPTRELA Q+ +
Sbjct: 186 ------------------------------------QGLFCLALAPTRELAYQIADQFNA 209
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958
G VK +VGG+ + Q L K PH++V +PGR+ L H L I Y +
Sbjct: 210 IGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRVLH--HLEHTKGFNLRSIKYFI 267
Query: 959 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
+DE DR+ + E+ NIL + + R T++FSAT+T SK K
Sbjct: 268 MDEADRLFSADFEEEVNNILKVI-----PKERNTYLFSATMT-------------SKVAK 309
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+ + L+N P V + K TL + + KD YL Y + + G
Sbjct: 310 LQRAS--------LVN---PVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAYILNELAG 358
Query: 1079 R-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
T++F ++ +S ++ +L L +P++ M+Q +RL +L++F+ SIL+ATDVA
Sbjct: 359 NLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVA 418
Query: 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197
ARGLDIP ++ VI+Y VP S+ Y+HR GRTARA N G + ++ ++ +Y ++ L+
Sbjct: 419 ARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVLK 478
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
KK+D FP E + + +R+ A I
Sbjct: 479 KKLD--SFPCQEETVLIFLERVQEAHRI 504
Score = 147 bits (370), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 141/495 (28%), Positives = 199/495 (40%), Gaps = 156/495 (31%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
II A + GF P +IQ +P AL R DI+G A+TGSGKT AF IP+L + LE P
Sbjct: 130 IIDACNKLGFNKPKEIQRESIPWALKGR-DIIGLAQTGSGKTAAFVIPVLQKL---LEAP 185
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
L+ L LAPTRELA Q+ +
Sbjct: 186 ------------------------------------QGLFCLALAPTRELAYQIADQFNA 209
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341
G VK +VGG+ + Q L K PH++V +PGR+ L H L I Y +
Sbjct: 210 IGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRVLH--HLEHTKGFNLRSIKYFI 267
Query: 342 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPR 401
+DE DR+ + E+ NIL + P++ R
Sbjct: 268 MDEADRLFSADFEEEVNNILKVI-------PKE--------------------------R 294
Query: 402 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
T++FSAT+T SK K+ + L+N P V + K
Sbjct: 295 NTYLFSATMT-------------SKVAKLQRA--------SLVN---PVKVQVASKYQTV 330
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
TL + + KD YL Y + + G +LT I T T
Sbjct: 331 DTLLQQYLFVPFKYKDCYLAYILNELAG-------------------NLT--IIFTSTCA 369
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNS-ISSVKRLTQLLTMLKCSPLPLHASMNQ 580
S + +L++ G + N + KRL AS+N+
Sbjct: 370 SSTKIA-----------MMLRNLGFGAIPINGDMDQGKRL---------------ASLNK 403
Query: 581 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 640
F+ SIL+ATDVAARGLDIP ++ VI+Y VP S+ Y+HR GRTARA N
Sbjct: 404 ---------FKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGN 454
Query: 641 EGLTVVLIESDEIPL 655
G + ++ ++ +
Sbjct: 455 SGRAITIVTQYDVEM 469
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
L LAPTRELA Q+ + G VK +VGG+ + Q L K PH++V +PG
Sbjct: 190 CLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPG 246
Score = 42.7 bits (99), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA N G + ++ ++ +Y ++ L+KK+D FP E + + +R+
Sbjct: 442 YVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVLKKKLD--SFPCQEETVLIFLERVQ 499
Query: 1300 LAKSI 1304
A I
Sbjct: 500 EAHRI 504
>gi|393220360|gb|EJD05846.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 450
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 145/454 (31%), Positives = 229/454 (50%), Gaps = 74/454 (16%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
++ AL Q FK PT IQ+ +P A+ R DI+G AETGSGKT+AF +PIL
Sbjct: 26 LLEALEQMNFKKPTDIQAEALPHAISGR-DIIGVAETGSGKTVAFALPIL---------- 74
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
+ L EE L+A +LAPTRELA Q+
Sbjct: 75 ------------------QRLWEEPKG-----------LFACVLAPTRELAYQISQQFES 105
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958
G V+ A +VGGM+ Q L K PHI+VATPGRL + ++ + L I +LV
Sbjct: 106 LGSAIGVRCAVIVGGMNMVDQAVALAKRPHIVVATPGRLNDHLE--NTKGFSLRGIKFLV 163
Query: 959 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
+DE DR+++ P + IL + + R T++FSAT+T +K K
Sbjct: 164 LDEADRLLDMDFGPIIDKILKVI-----PKERTTYLFSATMT-------------TKVAK 205
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHP 1077
+ + ++ +P V++++K TL + + + +K+ L +
Sbjct: 206 LQRA-----------SLTNPVRVEVSKKYTTVSTLLQYYLFIPYKQKEVNLIHMCNTLSQ 254
Query: 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
++F ++ +RL +L L S +PLH ++Q RL L +F+ +IL+ATD+A
Sbjct: 255 NSIIIFTRTVMDCQRLALILKTLGFSSVPLHGQLSQSARLGALAKFKSGGRNILVATDIA 314
Query: 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197
+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L ++ +
Sbjct: 315 SRGLDIPSVDAVINYDIPSHSKDYIHRVGRTARAGRAGNSITLVTQYDVELIQRIEAVIG 374
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
KK+DL +P D ++L+++R+D A + E K
Sbjct: 375 KKMDL--WPTDAEEIALLRERVDEAARMAAKELK 406
Score = 110 bits (276), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 99/200 (49%), Gaps = 42/200 (21%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
++ AL Q FK PT IQ+ +P A+ R DI+G AETGSGKT+AF +PIL
Sbjct: 26 LLEALEQMNFKKPTDIQAEALPHAISGR-DIIGVAETGSGKTVAFALPIL---------- 74
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
+ L EE L+A +LAPTRELA Q+
Sbjct: 75 ------------------QRLWEEPKG-----------LFACVLAPTRELAYQISQQFES 105
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341
G V+ A +VGGM+ Q L K PHI+VATPGRL + ++ + L I +LV
Sbjct: 106 LGSAIGVRCAVIVGGMNMVDQAVALAKRPHIVVATPGRLNDHLE--NTKGFSLRGIKFLV 163
Query: 342 IDETDRMIESGHFPELKNIL 361
+DE DR+++ P + IL
Sbjct: 164 LDEADRLLDMDFGPIIDKIL 183
Score = 100 bits (249), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKR 559
++ +P V++++K TL + + + +K+ L + ++F ++ +R
Sbjct: 210 SLTNPVRVEVSKKYTTVSTLLQYYLFIPYKQKEVNLIHMCNTLSQNSIIIFTRTVMDCQR 269
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L +L L S +PLH ++Q RL L +F+ +IL+ATD+A+RGLDIP ++ VI+Y
Sbjct: 270 LALILKTLGFSSVPLHGQLSQSARLGALAKFKSGGRNILVATDIASRGLDIPSVDAVINY 329
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 330 DIPSHSKDYIHRVGRTARAGRAGNSITLVTQYDVEL 365
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 36/60 (60%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A +LAPTRELA Q+ G V+ A +VGGM+ Q L K PHI+VATPG L+
Sbjct: 86 ACVLAPTRELAYQISQQFESLGSAIGVRCAVIVGGMNMVDQAVALAKRPHIVVATPGRLN 145
Score = 43.5 bits (101), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ ++ L ++ + KK+DL +P D ++L+++R+
Sbjct: 337 DYIHRVGRTARAGRAGNSITLVTQYDVELIQRIEAVIGKKMDL--WPTDAEEIALLRERV 394
Query: 1299 DLAKSIEYLESK 1310
D A + E K
Sbjct: 395 DEAARMAAKELK 406
>gi|143462274|sp|Q0CIQ3.2|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
Length = 445
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 137/436 (31%), Positives = 225/436 (51%), Gaps = 79/436 (18%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + +++ A + G+ PT IQ +P AL R D++G AETGSGKT AF +P+L
Sbjct: 30 FRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGR-DLIGLAETGSGKTAAFVLPMLQ 88
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+++K + + ++LILAPTRELA
Sbjct: 89 ALMDKPQ---------------------------------------QFHSLILAPTRELA 109
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ + + G V+ ++GGM Q L K PH++VATPGRL L H T
Sbjct: 110 QQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPHVIVATPGRL-----LDHLENT 164
Query: 950 E---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
+ L + YLV+DE DR+++ P L +L + R+T++FSAT+
Sbjct: 165 KGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLP------KRKTYLFSATM------- 211
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
S KV S++R ++ P V ++ K L +S + H KD
Sbjct: 212 ---------SSKVE----SLQRA----SLSDPVRVSVSTKNQTASKLLQSYLFIPHKFKD 254
Query: 1067 SYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
YL Y + + G+ ++F ++ +RL+ +L L +P+H ++Q RL +L++FR
Sbjct: 255 FYLVYLLNERAGQMGIIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRA 314
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
++ ++L+ATDVAARGLDIP +++V++Y +P+ S+ YIHR GRTARA G+ + E
Sbjct: 315 RSRNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYE 374
Query: 1186 IPLYIKMFNSLEKKVD 1201
+ L++++ ++L KKV+
Sbjct: 375 VELWLRIEDALGKKVE 390
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 145/554 (26%), Positives = 236/554 (42%), Gaps = 165/554 (29%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + +++ A + G+ PT IQ +P AL R D++G AETGSGKT AF +P+L
Sbjct: 30 FRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGR-DLIGLAETGSGKTAAFVLPMLQ 88
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+++K + + ++LILAPTRELA
Sbjct: 89 ALMDKPQ---------------------------------------QFHSLILAPTRELA 109
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ + + G V+ ++GGM Q L K PH++VATPGRL L H T
Sbjct: 110 QQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPHVIVATPGRL-----LDHLENT 164
Query: 333 E---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+ L + YLV+DE DR+++ P ILD+ L +L
Sbjct: 165 KGFSLRTLKYLVLDEADRLLDLDFGP----ILDK---------------------LLRLL 199
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
+ R+T++FSAT+ S KV S++R ++ P
Sbjct: 200 PK---------RKTYLFSATM----------------SSKVE----SLQR----ASLSDP 226
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
V ++ K L +S + H KD YL Y + + G
Sbjct: 227 VRVSVSTKNQTASKLLQSYLFIPHKFKDFYLVYLLNERAG-------------------- 266
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
++GI +F ++ +RL+ +L L
Sbjct: 267 ---QMGI--------------------------------IFTRTVHETQRLSIMLRNLGF 291
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+P+H ++Q RL +L++FR ++ ++L+ATDVAARGLDIP +++V++Y +P+ S+ YI
Sbjct: 292 PAIPIHGQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYI 351
Query: 630 HRSGRTARANNEGLTVVLIESDEIPLKTK----FNLQEEENNEEEERAEADKEKTEDINV 685
HR GRTARA G+ + E+ L + + EE E++ E+ D
Sbjct: 352 HRVGRTARAGKSGIAFSFVTQYEVELWLRIEDALGKKVEEYKPEKDEVMIFAERVNDAQR 411
Query: 686 TVSSKKKKLKRKQN 699
+ + ++ K N
Sbjct: 412 VAALTMRDMQDKDN 425
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ +LILAPTRELA Q+ + + G V+ ++GGM Q L K PH++VATPG
Sbjct: 97 FHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPHVIVATPGR 156
Query: 1414 L 1414
L
Sbjct: 157 L 157
>gi|195358988|ref|XP_002045276.1| GM13636 [Drosophila sechellia]
gi|194127541|gb|EDW49584.1| GM13636 [Drosophila sechellia]
Length = 271
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 129/168 (76%), Gaps = 1/168 (0%)
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
+HPGRT+VFCNSI VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+AT
Sbjct: 1 RHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIAT 60
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+T++ +E E+ Y+K++
Sbjct: 61 DVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYK 120
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
+LE+ DLP FPI E L +++R++LA+ ++ E K+K+ + + W+
Sbjct: 121 TLERTEDLPLFPISERFLGAVRERVNLARDLDKEELKLKRVQSERGWM 168
Score = 176 bits (447), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 92/112 (82%)
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
+HPGRT+VFCNSI VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+AT
Sbjct: 1 RHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIAT 60
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
DVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +E E+
Sbjct: 61 DVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEV 112
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+N++HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E L +++R
Sbjct: 85 ENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPISERFLGAVRER 144
Query: 1298 IDLAKSIEYLESKIKKNRPD-NWLEKAAKDMDIIIDDEN 1335
++LA+ ++ E K+K+ + + W++K A++MD+IID N
Sbjct: 145 VNLARDLDKEELKLKRVQSERGWMKKHAEEMDMIIDGYN 183
>gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Acyrthosiphon pisum]
Length = 450
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 151/446 (33%), Positives = 226/446 (50%), Gaps = 76/446 (17%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
+KTPTKIQ +P AL KDI+G AETGSGKT AF IPIL + LENP
Sbjct: 39 WKTPTKIQKEAIPVALQG-KDIIGLAETGSGKTGAFAIPILQAL---LENP--------- 85
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 907
+ +ALIL PTRELA Q+ I G VK
Sbjct: 86 ---------------------------QRYFALILTPTRELAFQISEQIEALGSSIGVKC 118
Query: 908 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMI 966
A +VGGM Q +L K PHI++ATPGRL + ++ F L L LV+DE DR++
Sbjct: 119 AVIVGGMDMMAQSLMLAKKPHIIIATPGRLVDHLENTKGFSLRNL---KVLVMDEADRIL 175
Query: 967 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026
E+ IL + + R+TF+FSAT+T KKV K +
Sbjct: 176 NMDFEEEVDKILKVI-----PRERRTFLFSATMT----------------KKVQKLHRA- 213
Query: 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCN 1085
++ P V+++ K + L + I KD YL + + + G + +VF
Sbjct: 214 -------SLVDPVRVEVSTKFQTVEQLQQYYIFIPVKYKDVYLVHILNEMAGNSFMVFMA 266
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
+ + R+ LL L +PLH M Q +RL +L++F+ ++ SIL++TDV++RGLDIP
Sbjct: 267 TCNGTVRVALLLRNLGLDAIPLHGQMTQNKRLASLNKFKSKSRSILISTDVSSRGLDIPH 326
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
++ VI++ +P S+ YIHR GRTARA G + L+ +I LY ++ + KK LP +
Sbjct: 327 VDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRIEQLISKK--LPLY 384
Query: 1206 PIDESVLSLIKKRIDLAKSIEYLESK 1231
+++ + +++R+ A+ + + K
Sbjct: 385 QVEDDEVMCLQERVSEAQRLAKMNMK 410
Score = 176 bits (446), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 146/486 (30%), Positives = 207/486 (42%), Gaps = 156/486 (32%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
+KTPTKIQ +P AL KDI+G AETGSGKT AF IPIL + LENP
Sbjct: 39 WKTPTKIQKEAIPVALQG-KDIIGLAETGSGKTGAFAIPILQAL---LENP--------- 85
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 290
+ +ALIL PTRELA Q+ I G VK
Sbjct: 86 ---------------------------QRYFALILTPTRELAFQISEQIEALGSSIGVKC 118
Query: 291 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMI 349
A +VGGM Q +L K PHI++ATPGRL + ++ F L L LV+DE DR++
Sbjct: 119 AVIVGGMDMMAQSLMLAKKPHIIIATPGRLVDHLENTKGFSLRNL---KVLVMDEADRIL 175
Query: 350 ESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
E+ IL + PR+ R+TF+FSAT
Sbjct: 176 NMDFEEEVDKILKVI-------PRE--------------------------RRTFLFSAT 202
Query: 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469
+T KKV K + ++ P V+++ K + L + I
Sbjct: 203 MT----------------KKVQKLHRA--------SLVDPVRVEVSTKFQTVEQLQQYYI 238
Query: 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH 529
KD YL + + + G
Sbjct: 239 FIPVKYKDVYLVHILNEMAG---------------------------------------- 258
Query: 530 DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 589
+S++ + + CN R+ LL L +PLH M Q +RL +L++
Sbjct: 259 ---NSFMVF---------MATCNGTV---RVALLLRNLGLDAIPLHGQMTQNKRLASLNK 303
Query: 590 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIE 649
F+ ++ SIL++TDV++RGLDIP ++ VI++ +P S+ YIHR GRTARA G + L+
Sbjct: 304 FKSKSRSILISTDVSSRGLDIPHVDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVT 363
Query: 650 SDEIPL 655
+I L
Sbjct: 364 QYDIEL 369
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 37/61 (60%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ I G VK A +VGGM Q +L K PHI++ATPG
Sbjct: 88 YFALILTPTRELAFQISEQIEALGSSIGVKCAVIVGGMDMMAQSLMLAKKPHIIIATPGR 147
Query: 1414 L 1414
L
Sbjct: 148 L 148
Score = 43.1 bits (100), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + L+ +I LY ++ + KK LP + +++ + +++R+
Sbjct: 341 DYIHRVGRTARAGRSGKAITLVTQYDIELYQRIEQLISKK--LPLYQVEDDEVMCLQERV 398
Query: 1299 DLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE 1334
A+ + K N D +K +D+D DDE
Sbjct: 399 SEAQRLA------KMNMKDMGDKKGKRDLD---DDE 425
>gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
Length = 483
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 238/469 (50%), Gaps = 73/469 (15%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
T+ + D ++ + + N+ ++ ++ F PT IQS +P AL KDI+G A+TG
Sbjct: 57 TTIDPDAELKFKTFKELNLVPDLLESIENMKFTKPTPIQSESIPHALEG-KDIIGLAQTG 115
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
SGKT AF IPIL + + +
Sbjct: 116 SGKTAAFAIPILQSLWH---------------------------------------AQQP 136
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
+ L+LAPTRELA Q++ G ++ +C+VGGM Q R L + PHI+VATPGR
Sbjct: 137 YFGLVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHIIVATPGR 196
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
+ + ++ H L + YLV+DE DR+++ P L IL +V T+ R T++FS
Sbjct: 197 IMDHLE--HTKGFTLKNLKYLVMDEADRLLDMDFGPALDKIL-KVIPTK----RTTYLFS 249
Query: 997 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
AT+T+ I++LQ ++ +P V ++ K L +S
Sbjct: 250 ATMTNK-----------------------IEKLQRA-SLHNPVRVAVSSKYQTADNLVQS 285
Query: 1057 KILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
+L K++ L + + + +++ VF +++ +R L +L + +PLH ++Q Q
Sbjct: 286 MMLVNDGYKNTILIHLLNEFMSKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQ 345
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
RL +L++F+ +IL+ATDVAARGLDIP ++ VI+Y +P S+ YIHR GRTARA G
Sbjct: 346 RLGSLNKFKSNTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSG 405
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
++ LI ++ +Y+++ + L K+ D P E VL + +D A +
Sbjct: 406 KSISLITQYDLEMYLRIESVLGYKLPKEDKPPKE-VLDALHIHVDKATA 453
Score = 110 bits (274), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 42/231 (18%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
T+ + D ++ + + N+ ++ ++ F PT IQS +P AL KDI+G A+TG
Sbjct: 57 TTIDPDAELKFKTFKELNLVPDLLESIENMKFTKPTPIQSESIPHALEG-KDIIGLAQTG 115
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKT AF IPIL + + +
Sbjct: 116 SGKTAAFAIPILQSLWH---------------------------------------AQQP 136
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
+ L+LAPTRELA Q++ G ++ +C+VGGM Q R L + PHI+VATPGR
Sbjct: 137 YFGLVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHIIVATPGR 196
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
+ + ++ H L + YLV+DE DR+++ P L IL + T+
Sbjct: 197 IMDHLE--HTKGFTLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTKRTT 245
Score = 108 bits (269), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 97/161 (60%), Gaps = 3/161 (1%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
T+ +I+ L ++ +P V ++ K L +S +L K++ L + + + +++
Sbjct: 251 TMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMSKSI 310
Query: 549 -VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
VF +++ +R L +L + +PLH ++Q QRL +L++F+ +IL+ATDVAARG
Sbjct: 311 IVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNTANILIATDVAARG 370
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
LDIP ++ VI+Y +P S+ YIHR GRTARA G ++ LI
Sbjct: 371 LDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLI 411
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+ L+LAPTRELA Q++ G ++ +C+VGGM Q R L + PHI+VATPG
Sbjct: 137 YFGLVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHIIVATPG 195
>gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 484
Score = 214 bits (544), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 149/463 (32%), Positives = 230/463 (49%), Gaps = 76/463 (16%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ I + RA GFK P+ IQ+ +P AL KDI+G A+TGSGKT AF +PIL
Sbjct: 39 SFADLGISPELCRACASMGFKKPSDIQAEAIPHALEG-KDIIGLAQTGSGKTAAFSLPIL 97
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
+ ENP +AL+LAPTREL
Sbjct: 98 QTL---WENP------------------------------------QPFFALVLAPTREL 118
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFH 947
A Q+ I G V+ A +VGGM Q L+K PH++VATPGRL + ++ F
Sbjct: 119 AYQISQQITSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHVIVATPGRLMDHLENTKGFS 178
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L L YLV+DE DR+++ P I+D+V + + R T++FSAT+T
Sbjct: 179 LKSL---KYLVMDEADRLLDLDFGP----IIDKV-LKVIPKERNTYLFSATMT------- 223
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
+K K+ + ++ P V+++ K TL + +L KDS
Sbjct: 224 ------TKVAKLQRA-----------SLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKDS 266
Query: 1068 YLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
YL Y + +++ F +++ +RL+ +L L +PLH M Q RL +L++F+
Sbjct: 267 YLLYLANELSSSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSG 326
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
SIL+ATDVA+RGLDIP ++ VI+Y +P S+ Y+HR GRTARA G ++ L+ ++
Sbjct: 327 GRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDV 386
Query: 1187 PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
+ ++ + + KK + F +D+ ++L+ + A LE
Sbjct: 387 EILQRIESHIGKK--MTSFDVDKEAVALLTDTVARANREAALE 427
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 155/538 (28%), Positives = 228/538 (42%), Gaps = 159/538 (29%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ I + RA GFK P+ IQ+ +P AL KDI+G A+TGSGKT AF +PIL
Sbjct: 39 SFADLGISPELCRACASMGFKKPSDIQAEAIPHALEG-KDIIGLAQTGSGKTAAFSLPIL 97
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
+ ENP +AL+LAPTREL
Sbjct: 98 QTL---WENP------------------------------------QPFFALVLAPTREL 118
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFH 330
A Q+ I G V+ A +VGGM Q L+K PH++VATPGRL + ++ F
Sbjct: 119 AYQISQQITSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHVIVATPGRLMDHLENTKGFS 178
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L L YLV+DE DR+++ P I+D+V LK I
Sbjct: 179 LKSL---KYLVMDEADRLLDLDFGP----IIDKV--------------------LKVI-- 209
Query: 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450
+ R T++FSAT+T +K K+ + ++ P
Sbjct: 210 -------PKERNTYLFSATMT-------------TKVAKLQRA-----------SLNKPV 238
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
V+++ K TL + +L KDSYL Y L E+
Sbjct: 239 RVEVSSKYSTVSTLLQHYLLLPLKNKDSYLLY---------LANELSS------------ 277
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
+ I T+T+ +S +RL+ +L L
Sbjct: 278 SSMIIFTRTVADS----------------------------------QRLSIILRRLGFP 303
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+PLH M Q RL +L++F+ SIL+ATDVA+RGLDIP ++ VI+Y +P S+ Y+H
Sbjct: 304 AIPLHGQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVH 363
Query: 631 RSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVS 688
R GRTARA G ++ L+ ++ + + E ++ + DKE + TV+
Sbjct: 364 RVGRTARAGRSGKSITLVTQYDVEILQRI---ESHIGKKMTSFDVDKEAVALLTDTVA 418
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+LAPTRELA Q+ I G V+ A +VGGM Q L+K PH++VATPG
Sbjct: 107 FFALVLAPTRELAYQISQQITSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHVIVATPGR 166
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
L + K L KS++YL + D L+ D IID + PK R
Sbjct: 167 LMDHLENTKGFSL-KSLKYLV----MDEADRLLD---LDFGPIIDKVLKVIPK--ERNTY 216
Query: 1469 LMSKALVSKRKELQ 1482
L S + +K +LQ
Sbjct: 217 LFSATMTTKVAKLQ 230
>gi|358060304|dbj|GAA94058.1| hypothetical protein E5Q_00705 [Mixia osmundae IAM 14324]
Length = 447
Score = 214 bits (544), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/463 (30%), Positives = 230/463 (49%), Gaps = 74/463 (15%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
S+ ++ Q A++ + E + + Q G+K P++IQ+ +P AL R D+V A+TGS
Sbjct: 2 SDADEPPAQTADFSSLGLIEPLCKVCEQLGYKKPSEIQAQSIPFALQGR-DLVALAQTGS 60
Query: 818 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 877
GKT AF +PIL + N+ +
Sbjct: 61 GKTAAFALPILQALWNE---------------------------------------PSPF 81
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
+A +LAPTRELA Q+ G V+ A +VGGM Q L+K PHI+VATPGRL
Sbjct: 82 FACVLAPTRELAYQISEQFQALGSTIGVRCAVIVGGMDMMTQSIALSKRPHIIVATPGRL 141
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+ ++ + L I YLV+DE DR+++ P + IL + + R TF+FSA
Sbjct: 142 QDHLE--NTKGFSLKAIKYLVMDEADRLLDMDFGPVIDTILKII-----PRERNTFLFSA 194
Query: 998 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 1057
T+T +K K+ + ++ +P V+++ K TL +
Sbjct: 195 TMT-------------TKVAKLQRA-----------SLSNPVKVEVSTKYSTVDTLVQEY 230
Query: 1058 ILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
K++YL Y + G+++ VF ++ +RL+ +L L +PLH + Q R
Sbjct: 231 CFFPFKHKETYLVYLCNELAGKSIIVFVRTVHDAQRLSLILRTLGFPAVPLHGQLTQSNR 290
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
L L++F+ IL+ATDVA+RGLDIP +++V++Y +P S+ YIHR GRTARA G
Sbjct: 291 LGALNKFKSGGRQILVATDVASRGLDIPMVDYVVNYDIPTHSKDYIHRVGRTARAGRSGK 350
Query: 1177 TLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1219
++ L+ ++ L ++ + KK + +F D+ + ++ +R+
Sbjct: 351 SITLVTQYDVELLQRIEGVVGKK--MSEFAHDKEAVLVLSERV 391
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 140/516 (27%), Positives = 219/516 (42%), Gaps = 156/516 (30%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
S+ ++ Q A++ + E + + Q G+K P++IQ+ +P AL R D+V A+TGS
Sbjct: 2 SDADEPPAQTADFSSLGLIEPLCKVCEQLGYKKPSEIQAQSIPFALQGR-DLVALAQTGS 60
Query: 201 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 260
GKT AF +PIL + N+ +
Sbjct: 61 GKTAAFALPILQALWNE---------------------------------------PSPF 81
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
+A +LAPTRELA Q+ G V+ A +VGGM Q L+K PHI+VATPGRL
Sbjct: 82 FACVLAPTRELAYQISEQFQALGSTIGVRCAVIVGGMDMMTQSIALSKRPHIIVATPGRL 141
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
+ ++ + L I YLV+DE DR+++ P + IL + PR+
Sbjct: 142 QDHLE--NTKGFSLKAIKYLVMDEADRLLDMDFGPVIDTILKII-------PRE------ 186
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440
R TF+FSAT+T +K K+ +
Sbjct: 187 --------------------RNTFLFSATMT-------------TKVAKLQRA------- 206
Query: 441 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500
++ +P V+++ K TL + K++YL Y LC E+
Sbjct: 207 ----SLSNPVKVEVSTKYSTVDTLVQEYCFFPFKHKETYLVY---------LCNELA--- 250
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKR 559
G++ +VF ++ +R
Sbjct: 251 --------------------------------------------GKSIIVFVRTVHDAQR 266
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L+ +L L +PLH + Q RL L++F+ IL+ATDVA+RGLDIP +++V++Y
Sbjct: 267 LSLILRTLGFPAVPLHGQLTQSNRLGALNKFKSGGRQILVATDVASRGLDIPMVDYVVNY 326
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 327 DIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVEL 362
Score = 60.5 bits (145), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A +LAPTRELA Q+ G V+ A +VGGM Q L+K PHI+VATPG
Sbjct: 81 FFACVLAPTRELAYQISEQFQALGSTIGVRCAVIVGGMDMMTQSIALSKRPHIIVATPGR 140
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI--IIDDENLIQPKANSRE 1466
L + K L K+I+YL + D L DMD +ID I P+ R
Sbjct: 141 LQDHLENTKGFSL-KAIKYL----VMDEADRLL-----DMDFGPVIDTILKIIPR--ERN 188
Query: 1467 NALMSKALVSKRKELQ 1482
L S + +K +LQ
Sbjct: 189 TFLFSATMTTKVAKLQ 204
>gi|449547391|gb|EMD38359.1| hypothetical protein CERSUDRAFT_49063 [Ceriporiopsis subvermispora B]
Length = 447
Score = 214 bits (544), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 145/462 (31%), Positives = 234/462 (50%), Gaps = 78/462 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E ++ A+ Q + TPT+IQ+ V+P AL R DI+G A TGSGKT AF +PIL
Sbjct: 18 LGLIEPLLEAVDQLHYTTPTEIQAEVLPHALQGR-DIIGVAATGSGKTAAFALPIL---- 72
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
++L EE L+A ++APTRELA Q+
Sbjct: 73 ------------------------QKLWEEPKG-----------LFACVMAPTRELAYQI 97
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 98 SQQFESLGSAIGVRCATIVGGMPIMDQAVALAKRPHIVVATPGRLNDHLE--NTKGFSLR 155
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ +LV+DE DR+++ P + IL + + R T++FSAT+T
Sbjct: 156 GLKFLVMDEADRLLDMDFGPIIDKILKVI-----PKERTTYLFSATMT------------ 198
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
+K K+ + ++ +P V+++EK TL + + +KD +L Y
Sbjct: 199 -TKVAKLQRA-----------SLSNPVRVEVSEKYSTVSTLLQYYLFIPLVQKDVHLIYL 246
Query: 1073 ---ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129
+ Q+ ++F ++ +RL+ +L L +PLH ++Q RL L +F+
Sbjct: 247 ANSLAQN--SIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRK 304
Query: 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLY 1189
+L+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 305 VLVATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSVTLVTQYDVELV 364
Query: 1190 IKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ ++ KK++L +P D ++L+++R+D A + E K
Sbjct: 365 QRIEATIGKKMEL--WPTDAEEIALLRERVDEAGRVAVTELK 404
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 137/500 (27%), Positives = 214/500 (42%), Gaps = 154/500 (30%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E ++ A+ Q + TPT+IQ+ V+P AL R DI+G A TGSGKT AF +PIL
Sbjct: 18 LGLIEPLLEAVDQLHYTTPTEIQAEVLPHALQGR-DIIGVAATGSGKTAAFALPIL---- 72
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
++L EE L+A ++APTRELA Q+
Sbjct: 73 ------------------------QKLWEEPKG-----------LFACVMAPTRELAYQI 97
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L
Sbjct: 98 SQQFESLGSAIGVRCATIVGGMPIMDQAVALAKRPHIVVATPGRLNDHLE--NTKGFSLR 155
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ +LV+DE DR+++ P + IL + P++
Sbjct: 156 GLKFLVMDEADRLLDMDFGPIIDKILKVI-------PKE--------------------- 187
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R T++FSAT+T +K K+ + ++ +P V+++
Sbjct: 188 -----RTTYLFSATMT-------------TKVAKLQRA-----------SLSNPVRVEVS 218
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
EK TL + + +KD +L Y
Sbjct: 219 EKYSTVSTLLQYYLFIPLVQKDVHLIY--------------------------------- 245
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+ +L ++ I+ +F ++ +RL+ +L L +PLH
Sbjct: 246 LANSLAQNSII----------------------IFTRTVHDAQRLSIILRTLGFPAVPLH 283
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
++Q RL L +F+ +L+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRT
Sbjct: 284 GQLSQSARLGALGKFKSGGRKVLVATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRT 343
Query: 636 ARANNEGLTVVLIESDEIPL 655
ARA G +V L+ ++ L
Sbjct: 344 ARAGRSGKSVTLVTQYDVEL 363
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A ++APTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG L
Sbjct: 84 ACVMAPTRELAYQISQQFESLGSAIGVRCATIVGGMPIMDQAVALAKRPHIVVATPGRL 142
Score = 44.3 bits (103), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ ++ L ++ ++ KK++L +P D ++L+++R+
Sbjct: 335 DYIHRVGRTARAGRSGKSVTLVTQYDVELVQRIEATIGKKMEL--WPTDAEEIALLRERV 392
Query: 1299 DLAKSIEYLESK 1310
D A + E K
Sbjct: 393 DEAGRVAVTELK 404
>gi|297620018|ref|YP_003708123.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
voltae A3]
gi|297378995|gb|ADI37150.1| DEAD/DEAH box helicase domain protein [Methanococcus voltae A3]
Length = 584
Score = 214 bits (544), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 148/441 (33%), Positives = 220/441 (49%), Gaps = 69/441 (15%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
E+ NI E+I+ L +KGF T+IQ +P L D+VG A+TG+GKTLAFGIPI+
Sbjct: 2 EFRDLNISESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPII 61
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
I K+E E +K + + A+IL PTREL
Sbjct: 62 QKIQEKIE-------------------------------ENGRKNKKAVKAIILTPTREL 90
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+QV + I K +++ V GG S EKQ+ L I++ TPGR+ + LG L
Sbjct: 91 ALQVHDEIDSVNKGNKLRLCTVYGGQSIEKQINKLRNGVDIVIGTPGRVID--HLGRRTL 148
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+L +I++LV+DE D M+ G +++ I M++ + + +FSATL S+ +
Sbjct: 149 -KLNEIDFLVLDEADEMLNLGFIDDVEEI-----MSKCKEDCRKLLFSATLPKSIMELVE 202
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV-DLTEKIGITKTLTESKILCKHDEKDS 1067
L G+ ++ + +KS + +LTE+I K +K
Sbjct: 203 LHMGEYET----------------IRVKSKALTTELTEQIYYE---------VKEHDKFE 237
Query: 1068 YLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
L I + PG LVFC + + V +L + L S LH MNQ+QR L RF+
Sbjct: 238 LLRRIIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSH 297
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
I++ATDVAARG+DI + HVI+Y +P+ E Y+HR GRT RA N+G + +E E
Sbjct: 298 KIDIMIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREF 357
Query: 1187 PLY---IKMFNSLEKKVDLPD 1204
+ +K+ S KK +PD
Sbjct: 358 RRFKYIMKISKSDAKKEKIPD 378
Score = 119 bits (299), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 110/212 (51%), Gaps = 34/212 (16%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
E+ NI E+I+ L +KGF T+IQ +P L D+VG A+TG+GKTLAFGIPI+
Sbjct: 2 EFRDLNISESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPII 61
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
I K+E E +K + + A+IL PTREL
Sbjct: 62 QKIQEKIE-------------------------------ENGRKNKKAVKAIILTPTREL 90
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+QV + I K +++ V GG S EKQ+ L I++ TPGR+ + LG L
Sbjct: 91 ALQVHDEIDSVNKGNKLRLCTVYGGQSIEKQINKLRNGVDIVIGTPGRVID--HLGRRTL 148
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDR 363
+L +I++LV+DE D M+ G +++ I+ +
Sbjct: 149 -KLNEIDFLVLDEADEMLNLGFIDDVEEIMSK 179
Score = 102 bits (254), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 80/142 (56%), Gaps = 4/142 (2%)
Query: 515 GITKTLTESKILCKHDEKDSY--LYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSP 571
+T LTE +I + E D + L I + PG LVFC + + V +L + L S
Sbjct: 217 ALTTELTE-QIYYEVKEHDKFELLRRIIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSS 275
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
LH MNQ+QR L RF+ I++ATDVAARG+DI + HVI+Y +P+ E Y+HR
Sbjct: 276 EALHGDMNQKQRELALSRFKSHKIDIMIATDVAARGIDINELTHVINYDIPQNPEAYVHR 335
Query: 632 SGRTARANNEGLTVVLIESDEI 653
GRT RA N+G + +E E
Sbjct: 336 IGRTGRAGNKGTAITFVEPREF 357
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
A+IL PTRELA+QV + I K +++ V GG S EKQ+ L I++ TPG
Sbjct: 81 AIILTPTRELALQVHDEIDSVNKGNKLRLCTVYGGQSIEKQINKLRNGVDIVIGTPG 137
>gi|170046412|ref|XP_001850760.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
gi|167869183|gb|EDS32566.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
Length = 438
Score = 214 bits (544), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 147/457 (32%), Positives = 233/457 (50%), Gaps = 76/457 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+T+ A +K P+KIQ +P AL KD++G AETGSGKT AF +PIL + LE
Sbjct: 5 DTLCEACKALKWKAPSKIQREAIPLALQG-KDVIGLAETGSGKTGAFALPILQAL---LE 60
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
NP + +A+IL PTRELA Q+
Sbjct: 61 NP------------------------------------QRYFAVILTPTRELAYQISEQF 84
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKIN 955
G VK +VGGM Q L + PHI++ATPGRL + ++ F+L +
Sbjct: 85 EALGASIGVKCCVIVGGMDMVSQALQLARKPHIIIATPGRLVDHLENTKGFNLKA---VK 141
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
YLV+DE DR++ EL IL + + R+TF+FSAT+T
Sbjct: 142 YLVMDEADRILNLDFEVELDKILKVL-----PRERRTFLFSATMT--------------- 181
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 1075
KKV K + + ++K P V+++ K + L + + KD YL + + +
Sbjct: 182 -KKVKKLERA--------SLKDPVKVEVSSKYQTVEKLLQYYVFIPAKFKDVYLVHILNE 232
Query: 1076 HPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
G + ++FC++ ++ R +L L + +PLH M+Q +RL +L++F+ ++ IL++T
Sbjct: 233 LAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLASLNKFKGKDRQILIST 292
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ LY ++ +
Sbjct: 293 DVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEH 352
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
L KK LP+F +E + +++R+ A+ LE K
Sbjct: 353 LLGKK--LPEFKCEEDEVMALQERVGEAQRTARLELK 387
Score = 172 bits (437), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 148/552 (26%), Positives = 233/552 (42%), Gaps = 172/552 (31%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+T+ A +K P+KIQ +P AL KD++G AETGSGKT AF +PIL + LE
Sbjct: 5 DTLCEACKALKWKAPSKIQREAIPLALQG-KDVIGLAETGSGKTGAFALPILQAL---LE 60
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
NP + +A+IL PTRELA Q+
Sbjct: 61 NP------------------------------------QRYFAVILTPTRELAYQISEQF 84
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYK 336
G VK +VGGM Q L + PHI++ATPGRL + H T+ L
Sbjct: 85 EALGASIGVKCCVIVGGMDMVSQALQLARKPHIIIATPGRLVD-----HLENTKGFNLKA 139
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396
+ YLV+DE DR++ EL IL + PR+
Sbjct: 140 VKYLVMDEADRILNLDFEVELDKILKVL-------PRE---------------------- 170
Query: 397 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 456
R+TF+FSAT+T KKV K + + ++K P V+++
Sbjct: 171 ----RRTFLFSATMT----------------KKVKKLERA--------SLKDPVKVEVSS 202
Query: 457 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516
K + L + + KD YL + + + G
Sbjct: 203 KYQTVEKLLQYYVFIPAKFKDVYLVHILNELAG--------------------------- 235
Query: 517 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA 576
+S++ + C++ ++ R +L L + +PLH
Sbjct: 236 ----------------NSFMIF------------CSTCNNTVRTALMLRALGLAAVPLHG 267
Query: 577 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 636
M+Q +RL +L++F+ ++ IL++TDVA+RGLDIP ++ V+++ +P S+ YIHR GRTA
Sbjct: 268 QMSQNKRLASLNKFKGKDRQILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTA 327
Query: 637 RANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEERAEADKEKTEDINV 685
RA G V + ++ L + F +E+E +ER + ++T + +
Sbjct: 328 RAGRAGKAVTFVTQYDVELYQRIEHLLGKKLPEFKCEEDEVMALQERV-GEAQRTARLEL 386
Query: 686 TVSSKKKKLKRK 697
++K +KRK
Sbjct: 387 KDIEERKGMKRK 398
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A+IL PTRELA Q+ G VK +VGGM Q L + PHI++ATPG
Sbjct: 65 YFAVILTPTRELAYQISEQFEALGASIGVKCCVIVGGMDMVSQALQLARKPHIIIATPGR 124
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
L + K +L K+++YL + D L ++D ++ + +++ R
Sbjct: 125 LVDHLENTKGFNL-KAVKYLVM----DEADRIL-----NLDFEVELDKILKVLPRERRTF 174
Query: 1469 LMSKALVSKRKELQ 1482
L S + K K+L+
Sbjct: 175 LFSATMTKKVKKLE 188
Score = 42.4 bits (98), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ LY ++ + L KK LP+F +E + +++R+
Sbjct: 318 DYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEHLLGKK--LPEFKCEEDEVMALQERV 375
Query: 1299 DLAKSIEYLESK 1310
A+ LE K
Sbjct: 376 GEAQRTARLELK 387
>gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
gi|118595827|sp|Q2H1Q8.1|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
Length = 493
Score = 213 bits (543), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 146/465 (31%), Positives = 234/465 (50%), Gaps = 83/465 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I +++ A + G+K PT IQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 70 LGIVDSLCDACKELGWKKPTPIQQESIPLALQDR-DIIGLAETGSGKTGAFALPILQALL 128
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K + L+AL+LAPTRELA Q+
Sbjct: 129 DKPQ---------------------------------------PLFALVLAPTRELAAQI 149
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G ++ A ++GG+ +Q L K PH++VATPGRL L H T+
Sbjct: 150 AQSFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRL-----LDHLEKTKGF 204
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + YLV+DE DR+++ P L IL + + R+TF+FSAT++ ++
Sbjct: 205 SLRNLRYLVMDEADRLLDMDFGPILDKILKFL-----PRERRTFLFSATMSSKVE----- 254
Query: 1010 KKGQSKSKKVSKGDPSIKR--LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
S++R L+D L K+ + K TL ++ + H KD+
Sbjct: 255 ---------------SLQRACLRDPL-----KVSISSSKYQTVSTLVQNYVFIPHTHKDT 294
Query: 1068 YLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
YL Y + G+T++ F ++ +R+ LL L +PLH ++Q RL L++FR
Sbjct: 295 YLIYLCNEFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAG 354
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+ IL+ATDVAARGLDIP ++ V++ +P S+ Y+HR GRTARA G + + ++
Sbjct: 355 SRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYDL 414
Query: 1187 PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
L++++ +L K L ++ +++ + + + R++ A+ I E K
Sbjct: 415 ELWLRIEAALGTK--LTEYSLEKDDVMVFRPRVEEAQRIAKTEIK 457
Score = 176 bits (447), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 212/498 (42%), Gaps = 163/498 (32%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I +++ A + G+K PT IQ +P AL R DI+G AETGSGKT AF +PIL ++
Sbjct: 70 LGIVDSLCDACKELGWKKPTPIQQESIPLALQDR-DIIGLAETGSGKTGAFALPILQALL 128
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K + L+AL+LAPTRELA Q+
Sbjct: 129 DKPQ---------------------------------------PLFALVLAPTRELAAQI 149
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G ++ A ++GG+ +Q L K PH++VATPGRL L H T+
Sbjct: 150 AQSFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRL-----LDHLEKTKGF 204
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YLV+DE DR+++ P L IL + PR+
Sbjct: 205 SLRNLRYLVMDEADRLLDMDFGPILDKILKFL-------PRE------------------ 239
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR--LQDLLNIKSPK 450
R+TF+FSAT++ ++ S++R L+D L K
Sbjct: 240 --------RRTFLFSATMSSKVE--------------------SLQRACLRDPL-----K 266
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
+ + K TL ++ + H KD+YL Y + G+T+
Sbjct: 267 VSISSSKYQTVSTLVQNYVFIPHTHKDTYLIYLCNEFAGQTI------------------ 308
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
I T+T+ E+ +R+ LL L
Sbjct: 309 ---IIFTRTVIET----------------------------------QRIAILLRTLGMG 331
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+PLH ++Q RL L++FR + IL+ATDVAARGLDIP ++ V++ +P S+ Y+H
Sbjct: 332 AIPLHGGLSQSARLGALNKFRAGSRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVH 391
Query: 631 RSGRTARANNEGLTVVLI 648
R GRTARA G + +
Sbjct: 392 RVGRTARAGRSGHAISFV 409
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+LAPTRELA Q+ G ++ A ++GG+ +Q L K PH++VATPG L
Sbjct: 136 ALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRL 194
>gi|390351278|ref|XP_786173.3| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Strongylocentrotus purpuratus]
Length = 428
Score = 213 bits (543), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 151/473 (31%), Positives = 243/473 (51%), Gaps = 77/473 (16%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
+KTP+KIQ+ +P AL KD++G AETGSGKT AF +PIL + LE P
Sbjct: 19 WKTPSKIQTEALPVALQG-KDVIGLAETGSGKTGAFALPILQAL---LETP--------- 65
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 907
+L+AL+L PTRELA Q+ G V
Sbjct: 66 ---------------------------QRLFALVLTPTRELAYQIAEQFEALGSTIGVSC 98
Query: 908 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMI 966
+VGG+ Q L K PH+++ATPGRL + ++ F+L L YLV+DE DR++
Sbjct: 99 VVIVGGIDMMTQALQLAKKPHVMIATPGRLVDHLENTKGFNLRGL---KYLVMDEADRIL 155
Query: 967 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026
E+ IL + + R+T+++SAT+T KKV+K +
Sbjct: 156 NMDFEAEIDKILKVI-----PKQRRTYLYSATMT----------------KKVAK----L 190
Query: 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCN 1085
+R +++ P V+++ K L +S I KD YL + + G + +VFC+
Sbjct: 191 QRA----SLQDPVKVEVSTKYQTVSKLQQSYIFIPAKYKDCYLVSILNEFAGNSFMVFCS 246
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
+ ++ +R+ LL L + +PLH ++Q +RL L++F+ ++ SIL+ATDVA+RGLDIP
Sbjct: 247 TCNNTQRVALLLRNLGLTAIPLHGQLSQSKRLGTLNKFKSKSRSILIATDVASRGLDIPH 306
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
++ VI++ +P S+ YIHR GRTARA G + + ++ LY ++ ++KK LP F
Sbjct: 307 VDCVINFDIPTHSKDYIHRVGRTARAGRAGKAITFVTQYDVELYQRIEQLIDKK--LPLF 364
Query: 1206 PIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLV 1258
+E + ++ +R+ A+ +E + + R GR ++ ++E T V
Sbjct: 365 KTEEEEVMMLMERVTEAQRYAKMEMRDSDEKKKGGRSR-GRDSKEDSEEFTGV 416
Score = 174 bits (440), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 136/486 (27%), Positives = 212/486 (43%), Gaps = 156/486 (32%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
+KTP+KIQ+ +P AL KD++G AETGSGKT AF +PIL + LE P
Sbjct: 19 WKTPSKIQTEALPVALQG-KDVIGLAETGSGKTGAFALPILQAL---LETP--------- 65
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 290
+L+AL+L PTRELA Q+ G V
Sbjct: 66 ---------------------------QRLFALVLTPTRELAYQIAEQFEALGSTIGVSC 98
Query: 291 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMI 349
+VGG+ Q L K PH+++ATPGRL + ++ F+L L YLV+DE DR++
Sbjct: 99 VVIVGGIDMMTQALQLAKKPHVMIATPGRLVDHLENTKGFNLRGL---KYLVMDEADRIL 155
Query: 350 ESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
E+ IL + P+Q R+T+++SAT
Sbjct: 156 NMDFEAEIDKILKVI-------PKQ--------------------------RRTYLYSAT 182
Query: 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469
+T KKV+K ++R +++ P V+++ K L +S I
Sbjct: 183 MT----------------KKVAK----LQR----ASLQDPVKVEVSTKYQTVSKLQQSYI 218
Query: 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH 529
KD YL + + G
Sbjct: 219 FIPAKYKDCYLVSILNEFAG---------------------------------------- 238
Query: 530 DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 589
+S++ + C++ ++ +R+ LL L + +PLH ++Q +RL L++
Sbjct: 239 ---NSFMVF------------CSTCNNTQRVALLLRNLGLTAIPLHGQLSQSKRLGTLNK 283
Query: 590 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIE 649
F+ ++ SIL+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G + +
Sbjct: 284 FKSKSRSILIATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRAGKAITFVT 343
Query: 650 SDEIPL 655
++ L
Sbjct: 344 QYDVEL 349
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G V +VGG+ Q L K PH+++ATPG L
Sbjct: 70 ALVLTPTRELAYQIAEQFEALGSTIGVSCVVIVGGIDMMTQALQLAKKPHVMIATPGRL 128
>gi|449456355|ref|XP_004145915.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Cucumis
sativus]
Length = 449
Score = 213 bits (542), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 226/465 (48%), Gaps = 84/465 (18%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I E ++ A G+K P+KIQ+ +P AL KD++G A+TGSGKT AF +PIL +
Sbjct: 14 LGICEQLVEACDSLGWKNPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQAL- 71
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +A +L+PTRELAIQ+
Sbjct: 72 --LEAP------------------------------------QAFFACVLSPTRELAIQI 93
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT--- 949
G +K A +VGG+ +Q L K PH++V TPGRL + HLT
Sbjct: 94 AEQFEALGSGIGIKCAVLVGGVDMVQQAINLAKRPHVVVGTPGRLVD-------HLTNTK 146
Query: 950 --ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + YLV+DE DR++ + IL+ E + R+T++FSAT+T
Sbjct: 147 GFSLRTLKYLVLDEADRLLNEDFEKSIDEILN-----EIPRERRTYLFSATMT------- 194
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
KKV ++LQ +++P ++ K TL + K+
Sbjct: 195 ---------KKV-------RKLQRAC-LRNPVKIEAATKYSTVDTLKQQYCFIPAKYKEC 237
Query: 1068 YLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
YL Y + + G T +VF + + + L+ +L L +P+ M Q +RL L++F+
Sbjct: 238 YLVYILTEMSGSTSMVFTRTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAG 297
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+IL+ TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+ E+
Sbjct: 298 ECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYEL 357
Query: 1187 PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
YI++ + KK LP F E + ++ +R+ AK I ++ K
Sbjct: 358 EWYIQIEKLIGKK--LPQFSAQEEEVLMLLERVAEAKRISLMKIK 400
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 141/526 (26%), Positives = 213/526 (40%), Gaps = 175/526 (33%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I E ++ A G+K P+KIQ+ +P AL KD++G A+TGSGKT AF +PIL +
Sbjct: 14 LGICEQLVEACDSLGWKNPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQAL- 71
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +A +L+PTRELAIQ+
Sbjct: 72 --LEAP------------------------------------QAFFACVLSPTRELAIQI 93
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT--- 332
G +K A +VGG+ +Q L K PH++V TPGRL + HLT
Sbjct: 94 AEQFEALGSGIGIKCAVLVGGVDMVQQAINLAKRPHVVVGTPGRLVD-------HLTNTK 146
Query: 333 --ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + YLV+DE DR++ + IL+ + PR+
Sbjct: 147 GFSLRTLKYLVLDEADRLLNEDFEKSIDEILNEI-------PRE---------------- 183
Query: 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450
R+T++FSAT+T KKV ++LQ +++P
Sbjct: 184 ----------RRTYLFSATMT----------------KKV-------RKLQRAC-LRNPV 209
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
++ K TL + K+ YL Y + + G T
Sbjct: 210 KIEAATKYSTVDTLKQQYCFIPAKYKECYLVYILTEMSGST------------------- 250
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
+ T+T +++L + +L L
Sbjct: 251 --SMVFTRTCDATRLL----------------------------------SLILRNLGLR 274
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+P+ M Q +RL L++F+ +IL+ TDVA+RGLDIP ++ VI+Y +P S+ YIH
Sbjct: 275 AIPISGQMTQAKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIH 334
Query: 631 RSGRTARANNEGLTVVLIESDEIPLKT-----------KFNLQEEE 665
R GRTARA G+ + L+ E+ +F+ QEEE
Sbjct: 335 RVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEE 380
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ A +L+PTRELAIQ+ G +K A +VGG+ +Q L K PH++V TPG
Sbjct: 77 AFFACVLSPTRELAIQIAEQFEALGSGIGIKCAVLVGGVDMVQQAINLAKRPHVVVGTPG 136
Query: 1413 AL 1414
L
Sbjct: 137 RL 138
Score = 44.3 bits (103), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G+ + L+ E+ YI++ + KK LP F E + ++ +R+
Sbjct: 331 DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKK--LPQFSAQEEEVLMLLERV 388
Query: 1299 DLAKSIEYLESK 1310
AK I ++ K
Sbjct: 389 AEAKRISLMKIK 400
>gi|392566869|gb|EIW60044.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 420
Score = 213 bits (542), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 226/443 (51%), Gaps = 88/443 (19%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
+K PT+IQ+ V+P AL R DI+G A TGSGKT AF +PIL
Sbjct: 3 YKAPTEIQAEVLPHALQGR-DIIGVASTGSGKTAAFALPIL------------------- 42
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 907
++L EE L+A +LAPTRELA+Q+ G V+
Sbjct: 43 ---------QKLWEEPKG-----------LFACVLAPTRELAVQIAQQFESIGSAMGVRC 82
Query: 908 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-----LYKINYLVIDET 962
A ++GG+ Q L K PHI+VATPGRL + HL E L + +LV+DE
Sbjct: 83 ATIIGGVDIMAQKVALAKKPHIVVATPGRLND-------HLEETKGFSLRSLQFLVLDEA 135
Query: 963 DRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 1022
DR+++ P + IL + + R T++FSAT+T +K K+ +
Sbjct: 136 DRLLDMDFGPIIDKILKVI-----PKERTTYLFSATMT-------------TKVAKLQRA 177
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGR 1079
++ +P +++ K TL + +L +KD +L Y + Q+
Sbjct: 178 -----------SLSNPVRIEVNSKYSTVSTLLQYYLLIPLPQKDVHLIYLANTLAQNS-- 224
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
++F ++ +RL+ +L L +PLH ++Q RL L +F+ +L+ATDVA+R
Sbjct: 225 IIIFTRTVHDAQRLSIILRTLGFPAIPLHGQLSQSARLGALGKFKSGGRKVLVATDVASR 284
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L +++ + KK
Sbjct: 285 GLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSVTLVTQYDVELVLRIEQVIGKK 344
Query: 1200 VDLPDFPIDESVLSLIKKRIDLA 1222
++L +P+D+ ++L+++R+D A
Sbjct: 345 MEL--WPVDKEEVALLRERVDEA 365
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 141/515 (27%), Positives = 217/515 (42%), Gaps = 167/515 (32%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
+K PT+IQ+ V+P AL R DI+G A TGSGKT AF +PIL
Sbjct: 3 YKAPTEIQAEVLPHALQGR-DIIGVASTGSGKTAAFALPIL------------------- 42
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 290
++L EE L+A +LAPTRELA+Q+ G V+
Sbjct: 43 ---------QKLWEEPKG-----------LFACVLAPTRELAVQIAQQFESIGSAMGVRC 82
Query: 291 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-----LYKINYLVIDET 345
A ++GG+ Q L K PHI+VATPGRL + HL E L + +LV+DE
Sbjct: 83 ATIIGGVDIMAQKVALAKKPHIVVATPGRLND-------HLEETKGFSLRSLQFLVLDEA 135
Query: 346 DRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFV 405
DR+++ P + IL + P++ R T++
Sbjct: 136 DRLLDMDFGPIIDKILKVI-------PKE--------------------------RTTYL 162
Query: 406 FSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
FSAT+T +K K+ + ++ +P +++ K TL
Sbjct: 163 FSATMT-------------TKVAKLQRA-----------SLSNPVRIEVNSKYSTVSTLL 198
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI 525
+ +L +KD +L Y + TL ++ I
Sbjct: 199 QYYLLIPLPQKDVHLIY---------------------------------LANTLAQNSI 225
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
++F ++ +RL+ +L L +PLH ++Q RL
Sbjct: 226 ----------------------IIFTRTVHDAQRLSIILRTLGFPAIPLHGQLSQSARLG 263
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
L +F+ +L+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G +V
Sbjct: 264 ALGKFKSGGRKVLVATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSV 323
Query: 646 VLIESDEIPLKTKFNLQEEENNEEEERAEADKEKT 680
L+ ++ L + E+ ++ E DKE+
Sbjct: 324 TLVTQYDVELVLRI---EQVIGKKMELWPVDKEEV 355
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A +LAPTRELA+Q+ G V+ A ++GG+ Q L K PHI+VATPG L+
Sbjct: 54 ACVLAPTRELAVQIAQQFESIGSAMGVRCATIIGGVDIMAQKVALAKKPHIVVATPGRLN 113
Score = 47.0 bits (110), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ ++ L +++ + KK++L +P+D+ ++L+++R+
Sbjct: 305 DYIHRVGRTARAGRSGKSVTLVTQYDVELVLRIEQVIGKKMEL--WPVDKEEVALLRERV 362
Query: 1299 DLAKSI---EYLESKIK---KNRPDNWLEKAAKDMD 1328
D A + E E I+ K R + DMD
Sbjct: 363 DEAGRLATSEMREQGIRGGHKKRKRGGEDGGKGDMD 398
>gi|152991450|ref|YP_001357172.1| DEAD-box ATP dependent DNA helicase [Nitratiruptor sp. SB155-2]
gi|151423311|dbj|BAF70815.1| ATP-dependent RNA helicase, DEAD-box family [Nitratiruptor sp.
SB155-2]
Length = 471
Score = 213 bits (542), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 141/419 (33%), Positives = 206/419 (49%), Gaps = 78/419 (18%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ FN+ I++A+ Q GFK P+ IQ +P +LA KD+VG A TG+GKT AF +P+L
Sbjct: 3 FSDFNLKPQIMKAIEQAGFKEPSPIQKEAIP-VVLAGKDMVGQAHTGTGKTAAFALPLL- 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
N LE L+ E E AL++ PTRELA
Sbjct: 61 ---NMLE-----------LDGEVE-------------------------ALVIVPTRELA 81
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQL-RILNKCPHILVATPGRLWEFIQLGHFHL 948
QV + I GKY +K A V GG S +QL I N ++VATPGRL + ++ G L
Sbjct: 82 TQVSDEIFRLGKYLGIKTATVYGGSSYSRQLNHIANAA--VVVATPGRLLDLLKSGKIEL 139
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
++V+DE D M++ G ++K I + + RQT +FSAT+ ++K
Sbjct: 140 NP----KFVVLDEADEMLDMGFLDDIKAIFNYLPTN-----RQTLLFSATMPQAIK---- 186
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
+ Q +L+ SP+ + +T+K + + + E+D
Sbjct: 187 ------------------ELAQQILH--SPEFISITKKEVTNVNIKQFYYVVDEHERDEA 226
Query: 1069 LYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + ++P ++++FC V RL Q L S LH M QRQR + + F+ N
Sbjct: 227 LIRLLDYKNPTKSIIFCRMKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGN 286
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
IL+ATDVAARGLDI + HV +YH+P E Y+HR GRT RA EG+ + L+ E
Sbjct: 287 IEILIATDVAARGLDISDVSHVFNYHIPFDPESYVHRIGRTGRAGKEGIAISLVTPHEF 345
Score = 116 bits (290), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 115/233 (49%), Gaps = 53/233 (22%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ FN+ I++A+ Q GFK P+ IQ +P +LA KD+VG A TG+GKT AF +P+L
Sbjct: 3 FSDFNLKPQIMKAIEQAGFKEPSPIQKEAIP-VVLAGKDMVGQAHTGTGKTAAFALPLL- 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
N LE L+ E E AL++ PTRELA
Sbjct: 61 ---NMLE-----------LDGEVE-------------------------ALVIVPTRELA 81
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQL-RILNKCPHILVATPGRLWEFIQLGHFHL 331
QV + I GKY +K A V GG S +QL I N ++VATPGRL + ++ G L
Sbjct: 82 TQVSDEIFRLGKYLGIKTATVYGGSSYSRQLNHIANAA--VVVATPGRLLDLLKSGKIEL 139
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
++V+DE D M++ G ++K I + + RQT++ S P+
Sbjct: 140 NP----KFVVLDEADEMLDMGFLDDIKAIFNYLPTN-----RQTLLFSATMPQ 183
Score = 110 bits (275), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 3/166 (1%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRT 547
T+ + I++L + SP+ + +T+K + + + E+D L + ++P ++
Sbjct: 180 TMPQAIKELAQQILHSPEFISITKKEVTNVNIKQFYYVVDEHERDEALIRLLDYKNPTKS 239
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC V RL Q L S LH M QRQR + + F+ N IL+ATDVAARG
Sbjct: 240 IIFCRMKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGNIEILIATDVAARG 299
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LDI + HV +YH+P E Y+HR GRT RA EG+ + L+ E
Sbjct: 300 LDISDVSHVFNYHIPFDPESYVHRIGRTGRAGKEGIAISLVTPHEF 345
Score = 60.1 bits (144), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 1355 DALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL-RILNKCPHILVATPGA 1413
+AL++ PTRELA QV + I GKY +K A V GG S +QL I N ++VATPG
Sbjct: 70 EALVIVPTRELATQVSDEIFRLGKYLGIKTATVYGGSSYSRQLNHIANAA--VVVATPGR 127
Query: 1414 LSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAK--DMDIIIDDENLIQPKANSRENALMS 1471
L +DL KS KI+ N L++A + DM + D + + +R+ L S
Sbjct: 128 L----LDLLKS-----GKIELNPKFVVLDEADEMLDMGFLDDIKAIFNYLPTNRQTLLFS 178
Query: 1472 KALVSKRKEL 1481
+ KEL
Sbjct: 179 ATMPQAIKEL 188
>gi|391344138|ref|XP_003746360.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Metaseiulus occidentalis]
Length = 461
Score = 213 bits (542), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 144/438 (32%), Positives = 227/438 (51%), Gaps = 75/438 (17%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
++TP+KIQ +P AL R DI+G AETGSGKT AF +PIL + LENP
Sbjct: 50 WRTPSKIQKEAIPVALQGR-DIIGLAETGSGKTAAFALPILQAL---LENPA-------- 97
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 907
+L+ALIL PTRELA Q+ G +K
Sbjct: 98 ----------------------------RLFALILTPTRELAFQISEQFEALGSTIGIKS 129
Query: 908 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMI 966
A +VGG+ Q +L K PH+++ATPGRL + ++ F L L YLV+DE DR++
Sbjct: 130 AVIVGGIDMMTQAMMLAKKPHVVIATPGRLIDHLENTKGFTLKNL---RYLVMDEADRIL 186
Query: 967 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026
E+ IL + + R+T+++SAT+T KKV+K +
Sbjct: 187 NMDFEEEVDKILKVIP----RENRRTYLYSATMT----------------KKVAK----L 222
Query: 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCN 1085
+R ++ P V+++ K L + + K+ +L + + G++ +VFC
Sbjct: 223 QRA----SLTDPVRVEVSTKYQTVDKLQQYYLFIPAKYKEVHLVHLLQDLAGQSFIVFCA 278
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
+ + ++L +L L + +PLH M+Q +RL L +F+ Q +ILLATDVAARGLDIP
Sbjct: 279 TCNGTQKLALMLRNLGFTAIPLHGQMSQAKRLGALQKFKAQARNILLATDVAARGLDIPH 338
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
++ VI+Y +P S+ YIHR GRTARA G + + ++ LY ++ + + K+ LP +
Sbjct: 339 VDVVINYDIPTHSKDYIHRVGRTARAGRSGKAVTFVSQYDVELYQRIEHLIGKQ--LPKY 396
Query: 1206 PIDESVLSLIKKRIDLAK 1223
+ E + ++++R+ A+
Sbjct: 397 DVLEREVLVLEERVQEAQ 414
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKR 559
++ P V+++ K L + + K+ +L + + G++ +VFC + + ++
Sbjct: 226 SLTDPVRVEVSTKYQTVDKLQQYYLFIPAKYKEVHLVHLLQDLAGQSFIVFCATCNGTQK 285
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L +L L + +PLH M+Q +RL L +F+ Q +ILLATDVAARGLDIP ++ VI+Y
Sbjct: 286 LALMLRNLGFTAIPLHGQMSQAKRLGALQKFKAQARNILLATDVAARGLDIPHVDVVINY 345
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+P S+ YIHR GRTARA G V + ++ L
Sbjct: 346 DIPTHSKDYIHRVGRTARAGRSGKAVTFVSQYDVEL 381
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 95/192 (49%), Gaps = 44/192 (22%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
++TP+KIQ +P AL R DI+G AETGSGKT AF +PIL + LENP
Sbjct: 50 WRTPSKIQKEAIPVALQGR-DIIGLAETGSGKTAAFALPILQAL---LENPA-------- 97
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 290
+L+ALIL PTRELA Q+ G +K
Sbjct: 98 ----------------------------RLFALILTPTRELAFQISEQFEALGSTIGIKS 129
Query: 291 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMI 349
A +VGG+ Q +L K PH+++ATPGRL + ++ F L L YLV+DE DR++
Sbjct: 130 AVIVGGIDMMTQAMMLAKKPHVVIATPGRLIDHLENTKGFTLKNL---RYLVMDEADRIL 186
Query: 350 ESGHFPELKNIL 361
E+ IL
Sbjct: 187 NMDFEEEVDKIL 198
Score = 57.0 bits (136), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA Q+ G +K A +VGG+ Q +L K PH+++ATPG L
Sbjct: 101 ALILTPTRELAFQISEQFEALGSTIGIKSAVIVGGIDMMTQAMMLAKKPHVVIATPGRL 159
>gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102]
Length = 478
Score = 213 bits (542), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 151/491 (30%), Positives = 245/491 (49%), Gaps = 81/491 (16%)
Query: 746 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
+S +E +D + E+ Q + + I +++ A +K PT IQ +P AL
Sbjct: 35 SSDQEESATLDEAALEESDTQPKTFKQLGIVDSLCEACESLNYKFPTPIQEKSIPVALQN 94
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
R DI+G AETGSGKT AF +PIL +++K +
Sbjct: 95 R-DIIGLAETGSGKTAAFALPILQALLDKPQ----------------------------- 124
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
L+ L+LAPTRELA Q+ G ++ A +VGG+ Q L K
Sbjct: 125 ----------PLFGLVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAVALGK 174
Query: 926 CPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVT 982
PHI+VATPGRL + H T+ L + YLV+DE DR+++ P + +L +
Sbjct: 175 KPHIIVATPGRLVD-----HLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFI- 228
Query: 983 MTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVD 1042
+ R+T++FSATL S KV S++R +++ P V
Sbjct: 229 ----PRERRTYLFSATL----------------SSKVE----SLQRA----SLRDPVRVS 260
Query: 1043 LTE-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTML 1100
++ K TL ++ ++ KD+YL Y + + G+ T++F ++ +R+ LL L
Sbjct: 261 VSSNKYQTVSTLLQNLLVIPQMRKDTYLIYLVNEFTGKSTIIFTRTVWETQRIAILLRTL 320
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
+PLH ++Q RL L++FR IL+ATDVAARGLDI ++ V++Y +P+ S+
Sbjct: 321 GFGAIPLHGQLSQSARLGALNKFRSGTRDILVATDVAARGLDISKVDVVLNYDLPQDSKT 380
Query: 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1220
YIHR GRTARA G+ + L+ +I ++ ++ +L KK+D+ +P ++ + + R++
Sbjct: 381 YIHRVGRTARAGKSGIAISLVTQYDIEVFQRIEAALGKKLDI--YPTEKEEVLAFQHRVE 438
Query: 1221 LAKSIEYLESK 1231
A+ +E K
Sbjct: 439 EAQRHARIEMK 449
Score = 171 bits (434), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 161/609 (26%), Positives = 256/609 (42%), Gaps = 179/609 (29%)
Query: 129 TSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
+S +E +D + E+ Q + + I +++ A +K PT IQ +P AL
Sbjct: 35 SSDQEESATLDEAALEESDTQPKTFKQLGIVDSLCEACESLNYKFPTPIQEKSIPVALQN 94
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
R DI+G AETGSGKT AF +PIL +++K +
Sbjct: 95 R-DIIGLAETGSGKTAAFALPILQALLDKPQ----------------------------- 124
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
L+ L+LAPTRELA Q+ G ++ A +VGG+ Q L K
Sbjct: 125 ----------PLFGLVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAVALGK 174
Query: 309 CPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVT 365
PHI+VATPGRL + H T+ L + YLV+DE DR+++ P + +L +
Sbjct: 175 KPHIIVATPGRLVD-----HLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFI- 228
Query: 366 MTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 425
PR+ R+T++FSATL
Sbjct: 229 ------PRE--------------------------RRTYLFSATL--------------- 241
Query: 426 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYYFI 484
S KV S++R +++ P V ++ K TL ++ ++ KD+YL Y +
Sbjct: 242 -SSKVE----SLQR----ASLRDPVRVSVSSNKYQTVSTLLQNLLVIPQMRKDTYLIYLV 292
Query: 485 LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 544
+ G++ I T+T+ E+
Sbjct: 293 NEFTGKS---------------------TIIFTRTVWET--------------------- 310
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+R+ LL L +PLH ++Q RL L++FR IL+ATDVA
Sbjct: 311 -------------QRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILVATDVA 357
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEE 664
ARGLDI ++ V++Y +P+ S+ YIHR GRTARA G+ + L+ T++++
Sbjct: 358 ARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLV--------TQYDI--- 406
Query: 665 ENNEEEERAEADKEKTEDINVT----VSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVN 720
E +R EA K DI T V + + +++ Q +++E+ LS + +
Sbjct: 407 ---EVFQRIEAALGKKLDIYPTEKEEVLAFQHRVEEAQRHARIEMKNLSEKRHGKGKRAK 463
Query: 721 KTEEIQSDE 729
T + D+
Sbjct: 464 GTSKRHRDD 472
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
L+LAPTRELA Q+ G ++ A +VGG+ Q L K PHI+VATPG L
Sbjct: 128 GLVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAVALGKKPHIIVATPGRLV 187
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
K L ++++YL + D L DMD + L++ R L
Sbjct: 188 DHLEKTKGFSL-RTLKYL----VMDEADRLL-----DMDFGPAIDKLLKFIPRERRTYLF 237
Query: 1471 SKALVSKRKELQ 1482
S L SK + LQ
Sbjct: 238 SATLSSKVESLQ 249
>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
Length = 478
Score = 213 bits (541), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 152/503 (30%), Positives = 249/503 (49%), Gaps = 84/503 (16%)
Query: 755 VDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 814
+D + E+ Q + + I +++ A +K PT IQ +P AL R DI+G AE
Sbjct: 44 LDEAVVEESDTQPKTFKELGIVDSLCEACESLNYKFPTPIQEKSIPIALQDR-DIIGLAE 102
Query: 815 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTR 874
TGSGKT AF +PIL +++K +
Sbjct: 103 TGSGKTAAFALPILQALLDKPQ-------------------------------------- 124
Query: 875 NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 934
L+ L+LAPTRELA Q+ G ++ A +VGG+ Q L K PHI+VATP
Sbjct: 125 -PLFGLVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAVALGKKPHIIVATP 183
Query: 935 GRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
GRL + H T+ L + YLV+DE DR+++ P + +L + + R+
Sbjct: 184 GRLVD-----HLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFI-----PRERR 233
Query: 992 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGIT 1050
T++FSATL+ ++ S++R +++ P V ++ K
Sbjct: 234 TYLFSATLSSKVE--------------------SLQRA----SLRDPVRVSVSSNKYQTV 269
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHA 1109
TL ++ ++ KD+YL Y + + G+ T+VF ++ +R+ LL L +PLH
Sbjct: 270 STLLQNLLVVPQKRKDTYLIYLVNEFTGKSTIVFTRTVWETQRIAILLRTLGFGAIPLHG 329
Query: 1110 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 1169
++Q RL L++FR IL+ATDVAARGLDI ++ V++Y +P+ S+ YIHR GRTA
Sbjct: 330 QLSQSARLGALNKFRSGTRDILVATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTA 389
Query: 1170 RANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
RA G+ + L+ +I ++ ++ +L KK+D+ +P ++ + + R++ A+ +E
Sbjct: 390 RAGKSGIAISLVTQYDIEIFQRIEAALGKKLDI--YPTEKEEVLAFQHRVEEAQREARIE 447
Query: 1230 SKI---KKNRPDNWLHRSGRTAR 1249
K KK+R +G+ R
Sbjct: 448 MKSLSEKKDRRGKGTKGTGKRHR 470
Score = 170 bits (431), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 154/580 (26%), Positives = 246/580 (42%), Gaps = 179/580 (30%)
Query: 138 VDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 197
+D + E+ Q + + I +++ A +K PT IQ +P AL R DI+G AE
Sbjct: 44 LDEAVVEESDTQPKTFKELGIVDSLCEACESLNYKFPTPIQEKSIPIALQDR-DIIGLAE 102
Query: 198 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTR 257
TGSGKT AF +PIL +++K +
Sbjct: 103 TGSGKTAAFALPILQALLDKPQ-------------------------------------- 124
Query: 258 NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 317
L+ L+LAPTRELA Q+ G ++ A +VGG+ Q L K PHI+VATP
Sbjct: 125 -PLFGLVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAVALGKKPHIIVATP 183
Query: 318 GRLWEFIQLGHFHLTE---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
GRL + H T+ L + YLV+DE DR+++ P + +L + PR+
Sbjct: 184 GRLVD-----HLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFI-------PRE 231
Query: 375 TMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD 434
R+T++FSATL+ ++
Sbjct: 232 --------------------------RRTYLFSATLSSKVE------------------- 246
Query: 435 PSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
S++R +++ P V ++ K TL ++ ++ KD+YL Y + + G++
Sbjct: 247 -SLQR----ASLRDPVRVSVSSNKYQTVSTLLQNLLVVPQKRKDTYLIYLVNEFTGKS-- 299
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 553
I T+T+ E+
Sbjct: 300 -------------------TIVFTRTVWET------------------------------ 310
Query: 554 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613
+R+ LL L +PLH ++Q RL L++FR IL+ATDVAARGLDI +
Sbjct: 311 ----QRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILVATDVAARGLDISKV 366
Query: 614 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERA 673
+ V++Y +P+ S+ YIHR GRTARA G+ + L+ T++++ E +R
Sbjct: 367 DVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLV--------TQYDI------EIFQRI 412
Query: 674 EADKEKTEDINVT----VSSKKKKLKRKQNPSQVEVSELS 709
EA K DI T V + + +++ Q +++E+ LS
Sbjct: 413 EAALGKKLDIYPTEKEEVLAFQHRVEEAQREARIEMKSLS 452
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
L+LAPTRELA Q+ G ++ A +VGG+ Q L K PHI+VATPG L
Sbjct: 128 GLVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAVALGKKPHIIVATPGRLV 187
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
K L ++++YL + D L DMD + L++ R L
Sbjct: 188 DHLEKTKGFSL-RTLKYL----VMDEADRLL-----DMDFGPAIDKLLKFIPRERRTYLF 237
Query: 1471 SKALVSKRKELQ 1482
S L SK + LQ
Sbjct: 238 SATLSSKVESLQ 249
>gi|405122110|gb|AFR96877.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus neoformans var. grubii
H99]
Length = 484
Score = 213 bits (541), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 228/448 (50%), Gaps = 76/448 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ I + RA GFK P+ IQ+ +P AL KDI+G A+TGSGKT AF +PIL
Sbjct: 40 FADLGISPELCRACASMGFKKPSDIQAEAIPHALEG-KDIIGLAQTGSGKTAAFSLPILQ 98
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ ENP +AL+LAPTRELA
Sbjct: 99 TL---WENP------------------------------------QPFFALVLAPTRELA 119
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ + G V+ A +VGGM Q L+K PH++VATPGRL + ++ F L
Sbjct: 120 YQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHVIVATPGRLMDHLENTKGFSL 179
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L YLV+DE DR+++ P I+D+V + + R T++FSAT+T
Sbjct: 180 KSL---KYLVMDEADRLLDLDFGP----IIDKV-LKVIPKERNTYLFSATMT-------- 223
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KV+K ++R ++ P V+++ K TL + +L KD+Y
Sbjct: 224 --------TKVAK----LQRA----SLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKDAY 267
Query: 1069 LYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + +++ F +++ +RL+ +L L +PLH M Q RL +L++F+
Sbjct: 268 LLYLANELSSSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGG 327
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL+ATDVA+RGLDIP ++ VI+Y +P S+ Y+HR GRTARA G ++ L+ ++
Sbjct: 328 RSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVE 387
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLI 1215
+ ++ + + KK + F +D+ ++L+
Sbjct: 388 ILQRIESHIGKK--MTSFDVDKEAVALL 413
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 149/497 (29%), Positives = 215/497 (43%), Gaps = 156/497 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ I + RA GFK P+ IQ+ +P AL KDI+G A+TGSGKT AF +PIL
Sbjct: 40 FADLGISPELCRACASMGFKKPSDIQAEAIPHALEG-KDIIGLAQTGSGKTAAFSLPILQ 98
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ ENP +AL+LAPTRELA
Sbjct: 99 TL---WENP------------------------------------QPFFALVLAPTRELA 119
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ + G V+ A +VGGM Q L+K PH++VATPGRL + ++ F L
Sbjct: 120 YQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHVIVATPGRLMDHLENTKGFSL 179
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L YLV+DE DR+++ P I+D+V LK I
Sbjct: 180 KSL---KYLVMDEADRLLDLDFGP----IIDKV--------------------LKVI--- 209
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
+ R T++FSAT+T KV+K ++R ++ P
Sbjct: 210 ------PKERNTYLFSATMT----------------TKVAK----LQR----ASLNKPVR 239
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K TL + +L KD+YL Y L E+ +
Sbjct: 240 VEVSSKYSTVSTLLQHYLLLPLKNKDAYLLY---------LANELSS------------S 278
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
I T+T+ +S +RL+ +L L
Sbjct: 279 SMIIFTRTVADS----------------------------------QRLSIILRRLGFPA 304
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH M Q RL +L++F+ SIL+ATDVA+RGLDIP ++ VI+Y +P S+ Y+HR
Sbjct: 305 IPLHGQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHR 364
Query: 632 SGRTARANNEGLTVVLI 648
GRTARA G ++ L+
Sbjct: 365 VGRTARAGRSGKSITLV 381
Score = 63.5 bits (153), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 67/134 (50%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+LAPTRELA Q+ + G V+ A +VGGM Q L+K PH++VATPG
Sbjct: 107 FFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHVIVATPGR 166
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
L + K L KS++YL + D L+ D IID + PK R
Sbjct: 167 LMDHLENTKGFSL-KSLKYLV----MDEADRLLD---LDFGPIIDKVLKVIPK--ERNTY 216
Query: 1469 LMSKALVSKRKELQ 1482
L S + +K +LQ
Sbjct: 217 LFSATMTTKVAKLQ 230
>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819312|sp|P0CR01.1|RRP3_CRYNB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|338819313|sp|P0CR00.1|RRP3_CRYNJ RecName: Full=ATP-dependent rRNA helicase RRP3
gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 484
Score = 213 bits (541), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 144/448 (32%), Positives = 224/448 (50%), Gaps = 76/448 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ I + RA GFK P+ IQ+ +P AL KDI+G A+TGSGKT AF +PIL
Sbjct: 40 FADLGISPELCRACASMGFKKPSDIQAEAIPHALEG-KDIIGLAQTGSGKTAAFSLPILQ 98
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ ENP +AL+LAPTRELA
Sbjct: 99 TL---WENP------------------------------------QPFFALVLAPTRELA 119
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ + G V+ A +VGGM Q L+K PHI+VATPGRL + ++ F L
Sbjct: 120 YQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPGRLMDHLENTKGFSL 179
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L YLV+DE DR+++ P + IL + + R T++FSAT+T
Sbjct: 180 KSL---KYLVMDEADRLLDLDFGPIIDKILKVI-----PKERNTYLFSATMT-------- 223
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
+K K+ + ++ P V+++ K TL + +L KD+Y
Sbjct: 224 -----TKVAKLQRA-----------SLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKDAY 267
Query: 1069 LYYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + ++ +F +++ +RL+ +L L +PLH M Q RL +L++F+
Sbjct: 268 LLYLANELSSSSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGG 327
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL+ATDVA+RGLDIP ++ VI+Y +P S+ Y+HR GRTARA G ++ L+ ++
Sbjct: 328 RSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVE 387
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLI 1215
+ ++ + + KK + F +D+ ++L+
Sbjct: 388 ILQRIESHIGKK--MTSFDVDKEAVALL 413
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 150/537 (27%), Positives = 224/537 (41%), Gaps = 159/537 (29%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ I + RA GFK P+ IQ+ +P AL KDI+G A+TGSGKT AF +PIL
Sbjct: 40 FADLGISPELCRACASMGFKKPSDIQAEAIPHALEG-KDIIGLAQTGSGKTAAFSLPILQ 98
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ ENP +AL+LAPTRELA
Sbjct: 99 TL---WENP------------------------------------QPFFALVLAPTRELA 119
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ + G V+ A +VGGM Q L+K PHI+VATPGRL + ++ F L
Sbjct: 120 YQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPGRLMDHLENTKGFSL 179
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L YLV+DE DR+++ P + IL + P++
Sbjct: 180 KSL---KYLVMDEADRLLDLDFGPIIDKILKVI-------PKE----------------- 212
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R T++FSAT+T +K K+ + ++ P
Sbjct: 213 ---------RNTYLFSATMT-------------TKVAKLQRA-----------SLNKPVR 239
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++ K TL + +L KD+YL Y L E+ +
Sbjct: 240 VEVSSKYSTVSTLLQHYLLLPLKNKDAYLLY---------LANELSS------------S 278
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+ T+T+ +S+ L IL+ G P
Sbjct: 279 SMMIFTRTVADSQRLS-----------IILRRLG---------------------FPAIP 306
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
L H M Q RL +L++F+ SIL+ATDVA+RGLDIP ++ VI+Y +P S+ Y+HR
Sbjct: 307 L--HGQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHR 364
Query: 632 SGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVS 688
GRTARA G ++ L+ ++ + + E ++ + DKE + TV+
Sbjct: 365 VGRTARAGRSGKSITLVTQYDVEILQRI---ESHIGKKMTSFDVDKEAVALLTDTVA 418
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+LAPTRELA Q+ + G V+ A +VGGM Q L+K PHI+VATPG
Sbjct: 107 FFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPGR 166
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
L + K L KS++YL + D L+ D IID + PK R
Sbjct: 167 LMDHLENTKGFSL-KSLKYLV----MDEADRLLD---LDFGPIIDKILKVIPK--ERNTY 216
Query: 1469 LMSKALVSKRKELQ 1482
L S + +K +LQ
Sbjct: 217 LFSATMTTKVAKLQ 230
>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 470
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/439 (30%), Positives = 226/439 (51%), Gaps = 78/439 (17%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
Q+ + + + I+ A+ + F TPT IQ+ +P +L R DI+G A+TGSGKT AF I
Sbjct: 65 QVTLFKELGLQPDILDAIEKLNFSTPTPIQAQSLPHSLQGR-DIIGIAQTGSGKTAAFAI 123
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
PIL + + + +A +LAPT
Sbjct: 124 PILQALW---------------------------------------EAQTPYFACVLAPT 144
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LG 944
RELA Q++ G ++ + +VGGM +Q + L + PH++VATPGRL + ++
Sbjct: 145 RELAYQIRETFDALGVNMGLRCSTIVGGMDMMEQAKELMRKPHVIVATPGRLMDHLENTK 204
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004
F L L YLV+DE DR+++ P L IL+ + + R+T++FSATLT
Sbjct: 205 GFSLKAL---KYLVMDEADRLLDMEFGPVLDRILNII-----PRERKTYLFSATLT---- 252
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
SK +K+ + ++ P + + +K TL ++ ++
Sbjct: 253 ---------SKVEKLQRA-----------SLIDPVKIAVNDKYSTVDTLIQTLMVVPDGY 292
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
K++YL Y + ++ G++ +VF + + +++ L +L S +PLH + Q QRL L++F
Sbjct: 293 KNTYLIYLLNEYVGKSVIVFARTCAHAQKVALLARILGFSAIPLHGQLTQAQRLGALNKF 352
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ + IL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA G ++ L+
Sbjct: 353 KSGDKQILVATDVAARGLDIPSVDLVVNYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQ 412
Query: 1184 DEIPLYIKMFNSLEKKVDL 1202
++ L ++ +EK +D+
Sbjct: 413 YDLELILR----IEKVIDM 427
Score = 180 bits (456), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 142/508 (27%), Positives = 223/508 (43%), Gaps = 156/508 (30%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
Q+ + + + I+ A+ + F TPT IQ+ +P +L R DI+G A+TGSGKT AF I
Sbjct: 65 QVTLFKELGLQPDILDAIEKLNFSTPTPIQAQSLPHSLQGR-DIIGIAQTGSGKTAAFAI 123
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
PIL + + + +A +LAPT
Sbjct: 124 PILQALW---------------------------------------EAQTPYFACVLAPT 144
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LG 327
RELA Q++ G ++ + +VGGM +Q + L + PH++VATPGRL + ++
Sbjct: 145 RELAYQIRETFDALGVNMGLRCSTIVGGMDMMEQAKELMRKPHVIVATPGRLMDHLENTK 204
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
F L L YLV+DE DR+++ E +LDR+ N
Sbjct: 205 GFSLKAL---KYLVMDEADRLLDM----EFGPVLDRIL---------------------N 236
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
I+ R R+T++FSATLT SK +K+ + ++
Sbjct: 237 IIPR--------ERKTYLFSATLT-------------SKVEKLQRA-----------SLI 264
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
P + + +K TL ++ ++ K++YL Y + ++ G+++
Sbjct: 265 DPVKIAVNDKYSTVDTLIQTLMVVPDGYKNTYLIYLLNEYVGKSV--------------- 309
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
I +T C H +K + L R L F
Sbjct: 310 ------IVFART-------CAHAQKVALL--------ARILGF----------------- 331
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
S +PLH + Q QRL L++F+ + IL+ATDVAARGLDIP ++ V++Y +P S+
Sbjct: 332 --SAIPLHGQLTQAQRLGALNKFKSGDKQILVATDVAARGLDIPSVDLVVNYDIPTDSKA 389
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIPL 655
YIHR GRTARA G +V L+ ++ L
Sbjct: 390 YIHRVGRTARAGRSGKSVSLVTQYDLEL 417
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A +LAPTRELA Q++ G ++ + +VGGM +Q + L + PH++VATPG
Sbjct: 136 YFACVLAPTRELAYQIRETFDALGVNMGLRCSTIVGGMDMMEQAKELMRKPHVIVATPGR 195
Query: 1414 L 1414
L
Sbjct: 196 L 196
>gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina
98AG31]
Length = 486
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 217/433 (50%), Gaps = 72/433 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E + +A FKTPT IQ+ +P AL KDI+G A+TGSGKT AF +P+L
Sbjct: 61 FASLGLIEPLCKACESLNFKTPTPIQTESIPYAL-QNKDIIGLAQTGSGKTAAFALPVLQ 119
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ ++P+ +A +LAPTRELA
Sbjct: 120 SL---WDSPSA------------------------------------FFACVLAPTRELA 140
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ G VK +VGGM Q L+K PH++VATPGRL + ++ H
Sbjct: 141 YQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALSKRPHVIVATPGRLHDHLE--HTKGF 198
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + +L++DE DR+++ P + IL + + R+T++FSAT+T
Sbjct: 199 SLRNLQFLIMDEADRLLDMDFGPVIDKILKVI-----PKERKTYLFSATMT--------- 244
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
+K K+ + ++ +P V+++ K L ++ + KD+YL
Sbjct: 245 ----TKVAKLQRA-----------SLNNPVKVEVSAKYDTVSALVQTYLFLPFKHKDTYL 289
Query: 1070 YYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + G++L VF ++ RL+ +L L +PLH ++Q RL L++F+ +
Sbjct: 290 VYLANELSGKSLIVFTRTVHDASRLSLILRTLGFPAVPLHGQLSQSARLGALNKFKSGDQ 349
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
S+L+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 350 SLLVATDVASRGLDIPAVDCVINFDLPTNSKDYIHRVGRTARAGRSGKSITLVTQYDVEL 409
Query: 1189 YIKMFNSLEKKVD 1201
++ + KK++
Sbjct: 410 LQRIEGVIGKKMN 422
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 135/503 (26%), Positives = 215/503 (42%), Gaps = 154/503 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E + +A FKTPT IQ+ +P AL KDI+G A+TGSGKT AF +P+L
Sbjct: 61 FASLGLIEPLCKACESLNFKTPTPIQTESIPYAL-QNKDIIGLAQTGSGKTAAFALPVLQ 119
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ ++P+ +A +LAPTRELA
Sbjct: 120 SL---WDSPSA------------------------------------FFACVLAPTRELA 140
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ G VK +VGGM Q L+K PH++VATPGRL + ++ H
Sbjct: 141 YQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALSKRPHVIVATPGRLHDHLE--HTKGF 198
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + +L++DE DR+++ P + IL + P++
Sbjct: 199 SLRNLQFLIMDEADRLLDMDFGPVIDKILKVI-------PKE------------------ 233
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+T++FSAT+T +K K+ + ++ +P V
Sbjct: 234 --------RKTYLFSATMT-------------TKVAKLQRA-----------SLNNPVKV 261
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
+++ K L ++ + KD+YL Y + G++L
Sbjct: 262 EVSAKYDTVSALVQTYLFLPFKHKDTYLVYLANELSGKSL-------------------- 301
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
I T+T+ HD RL+ +L L +
Sbjct: 302 -IVFTRTV--------HD--------------------------ASRLSLILRTLGFPAV 326
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLH ++Q RL L++F+ + S+L+ATDVA+RGLDIP ++ VI++ +P S+ YIHR
Sbjct: 327 PLHGQLSQSARLGALNKFKSGDQSLLVATDVASRGLDIPAVDCVINFDLPTNSKDYIHRV 386
Query: 633 GRTARANNEGLTVVLIESDEIPL 655
GRTARA G ++ L+ ++ L
Sbjct: 387 GRTARAGRSGKSITLVTQYDVEL 409
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 92/210 (43%), Gaps = 28/210 (13%)
Query: 1285 PIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ--PNQL 1342
PI + L LI+ L K+ E L K + A ++ DII L Q +
Sbjct: 58 PITFASLGLIEP---LCKACESLNFKTPTPIQTESIPYALQNKDII----GLAQTGSGKT 110
Query: 1343 LIFESRNLRYSWD------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ 1396
F L+ WD A +LAPTRELA Q+ G VK +VGGM Q
Sbjct: 111 AAFALPVLQSLWDSPSAFFACVLAPTRELAYQISQQFDALGSTIGVKTVVIVGGMDMMSQ 170
Query: 1397 LRILNKCPHILVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAK--DMDI--II 1452
L+K PH++VATPG L +E+ + +N +++A + DMD +I
Sbjct: 171 AIALSKRPHVIVATPGRLH-------DHLEHTKGFSLRNLQFLIMDEADRLLDMDFGPVI 223
Query: 1453 DDENLIQPKANSRENALMSKALVSKRKELQ 1482
D + PK R+ L S + +K +LQ
Sbjct: 224 DKILKVIPK--ERKTYLFSATMTTKVAKLQ 251
>gi|396459541|ref|XP_003834383.1| hypothetical protein LEMA_P060520.1 [Leptosphaeria maculans JN3]
gi|312210932|emb|CBX91018.1| hypothetical protein LEMA_P060520.1 [Leptosphaeria maculans JN3]
Length = 516
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 146/472 (30%), Positives = 233/472 (49%), Gaps = 92/472 (19%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E + A F TPT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 89 FADLGVREELCDACENLKFTTPTPIQTQAIPLALEGR-DVIGLAETGSGKTAAFVLPILQ 147
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+++K + L+ LILAPTRELA
Sbjct: 148 ALLDKPQ---------------------------------------ALFGLILAPTRELA 168
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ + G VK A +VGGM Q L+K PHI+VATPGRL + ++ F L
Sbjct: 169 YQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDHLENTKGFSL 228
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L Y+V+DE DR+++ P +LD++ R T++FSAT+
Sbjct: 229 KHL---KYMVLDEADRLLDLDFGP----VLDKILRVLPRDGRHTYLFSATM--------- 272
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG-ITKTLTESKILCKHDEKDS 1067
S KV S++R +++P V ++ + TL + + H KD
Sbjct: 273 -------SSKVE----SLQRAA----LQNPVRVSISSSSHQVVSTLLQRYLFIPHKHKDL 317
Query: 1068 YLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
YL + + + HP T++F +++ +R+ LL L +PLH ++Q RL L++F+
Sbjct: 318 YLIHLLTDNIGHP--TIIFTRTVNETERIAILLRALGFGAIPLHGQLSQSARLGALNKFK 375
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
++ IL+ATDVA+RGLDIP ++ V++ +P S+ Y+HR GRTARA G +
Sbjct: 376 TKSRDILVATDVASRGLDIPAVDLVVNLDLPSDSQTYVHRVGRTARAGKSGKAFSFVTQY 435
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR 1236
++ +++++ ++L KK I+E V +D ++++Y+ES + R
Sbjct: 436 DVEIWLRIEHALGKK-------IEEEV-------VDKDEALQYMESVSEAQR 473
Score = 176 bits (447), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 144/492 (29%), Positives = 209/492 (42%), Gaps = 156/492 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E + A F TPT IQ+ +P AL R D++G AETGSGKT AF +PIL
Sbjct: 89 FADLGVREELCDACENLKFTTPTPIQTQAIPLALEGR-DVIGLAETGSGKTAAFVLPILQ 147
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+++K + L+ LILAPTRELA
Sbjct: 148 ALLDKPQ---------------------------------------ALFGLILAPTRELA 168
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ + G VK A +VGGM Q L+K PHI+VATPGRL + ++ F L
Sbjct: 169 YQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDHLENTKGFSL 228
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L Y+V+DE DR+++ P L IL RV PR
Sbjct: 229 KHL---KYMVLDEADRLLDLDFGPVLDKIL-RVL------PRDG---------------- 262
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R T++FSAT+ S KV S++R +++P
Sbjct: 263 ---------RHTYLFSATM----------------SSKVE----SLQRAA----LQNPVR 289
Query: 452 VDLTEKIG-ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
V ++ + TL + + H KD YL + L
Sbjct: 290 VSISSSSHQVVSTLLQRYLFIPHKHKDLYLIHL--------------------------L 323
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
T+ IG HP T++F +++ +R+ LL L
Sbjct: 324 TDNIG---------------------------HP--TIIFTRTVNETERIAILLRALGFG 354
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+PLH ++Q RL L++F+ ++ IL+ATDVA+RGLDIP ++ V++ +P S+ Y+H
Sbjct: 355 AIPLHGQLSQSARLGALNKFKTKSRDILVATDVASRGLDIPAVDLVVNLDLPSDSQTYVH 414
Query: 631 RSGRTARANNEG 642
R GRTARA G
Sbjct: 415 RVGRTARAGKSG 426
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
LILAPTRELA Q+ + G VK A +VGGM Q L+K PHI+VATPG L
Sbjct: 158 GLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRL- 216
Query: 1416 LKRIDLAK--SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKA 1473
L ++ K S+++L+ + + D L+ D ++D + P+ + R L S
Sbjct: 217 LDHLENTKGFSLKHLKYMV-LDEADRLLD---LDFGPVLDKILRVLPR-DGRHTYLFSAT 271
Query: 1474 LVSKRKELQ 1482
+ SK + LQ
Sbjct: 272 MSSKVESLQ 280
>gi|150864621|ref|XP_001383517.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS 6054]
gi|149385877|gb|ABN65488.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS 6054]
Length = 396
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 140/420 (33%), Positives = 216/420 (51%), Gaps = 74/420 (17%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
F PT IQS +P AL KDI+G A+TGSGKT AF IPIL
Sbjct: 3 FSKPTPIQSEAIPHALEG-KDIIGLAQTGSGKTAAFAIPIL------------------- 42
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 907
+ L E A T F L+LAP RELA Q++ G V+
Sbjct: 43 ---------QSLWE--AQTPYF---------GLVLAPARELAYQIKETFDALGSTMGVRT 82
Query: 908 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 967
C+VGGM Q R L + PHI++ATPGR+ + ++ H L + Y V+DE D++++
Sbjct: 83 VCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLE--HTKGFSLKMLKYFVMDEADKLLD 140
Query: 968 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 1027
P L IL ++ R T++FSAT+T+ I+
Sbjct: 141 LEFGPVLDKILKQI-----PSKRTTYLFSATMTNK-----------------------IE 172
Query: 1028 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNS 1086
+LQ ++ +P V ++ K L +S +L K++YL + + + G++++ F +
Sbjct: 173 KLQRA-SLHNPVRVAVSSKYQTADNLIQSMMLVSDGYKNTYLIHLLNEFVGKSIIIFART 231
Query: 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 1146
+ +R + L +L S +PLH + Q QRL +L++F+ +IL+ATDVAARGLDIP +
Sbjct: 232 RAHTQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSV 291
Query: 1147 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206
+ VI+Y +P S+ Y+HR GRTARA G ++ L+ ++ +Y+++ S++KK LP P
Sbjct: 292 DVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKK--LPKDP 349
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 136/478 (28%), Positives = 204/478 (42%), Gaps = 154/478 (32%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
F PT IQS +P AL KDI+G A+TGSGKT AF IPIL
Sbjct: 3 FSKPTPIQSEAIPHALEG-KDIIGLAQTGSGKTAAFAIPIL------------------- 42
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 290
+ L E A T F L+LAP RELA Q++ G V+
Sbjct: 43 ---------QSLWE--AQTPYF---------GLVLAPARELAYQIKETFDALGSTMGVRT 82
Query: 291 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 350
C+VGGM Q R L + PHI++ATPGR+ + ++ H L + Y V+DE D++++
Sbjct: 83 VCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLE--HTKGFSLKMLKYFVMDEADKLLD 140
Query: 351 SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
E +LD++ LK I + R T++FSAT+
Sbjct: 141 L----EFGPVLDKI--------------------LKQIPSK---------RTTYLFSATM 167
Query: 411 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470
T+ I++LQ ++ +P V ++ K L +S +L
Sbjct: 168 TN-----------------------KIEKLQR-ASLHNPVRVAVSSKYQTADNLIQSMML 203
Query: 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 530
K++YL + + + G+++
Sbjct: 204 VSDGYKNTYLIHLLNEFVGKSII------------------------------------- 226
Query: 531 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 590
++ H RT + C +L S +PLH + Q QRL +L++F
Sbjct: 227 -----IFARTRAHTQRTSILCR-------------ILGFSAVPLHGDLTQAQRLGSLNKF 268
Query: 591 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+ +IL+ATDVAARGLDIP ++ VI+Y +P S+ Y+HR GRTARA G ++ L+
Sbjct: 269 KSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLV 326
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 1354 WDA------LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 1407
W+A L+LAP RELA Q++ G V+ C+VGGM Q R L + PHI+
Sbjct: 46 WEAQTPYFGLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHII 105
Query: 1408 VATPG 1412
+ATPG
Sbjct: 106 IATPG 110
>gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
Length = 470
Score = 211 bits (537), Expect = 2e-51, Method: Composition-based stats.
Identities = 145/460 (31%), Positives = 233/460 (50%), Gaps = 78/460 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E I A + F PT IQ+ +P AL R D++G A+TGSGKT AF IPIL G+ +
Sbjct: 34 EPICEACEKLHFSAPTDIQAQAIPHALQGR-DVIGLAQTGSGKTAAFSIPILQGL---WD 89
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
+P L+A ILAPTREL+ Q+ I
Sbjct: 90 DP------------------------------------RPLFACILAPTRELSYQISQQI 113
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
G V+ A +VGGM Q L+K PH++VATPGRL + L + L + Y
Sbjct: 114 EALGATIGVRCATIVGGMDMMTQSIALSKRPHVIVATPGRLQD--HLENTKGFSLRSLRY 171
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
LV+DE DR+++ P + +L + + R+T +FSAT+T +K
Sbjct: 172 LVMDEADRLLDLDFGPIIDKLLQNI-----PKERRTMLFSATMT-------------TKV 213
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
K+ + ++++P +++ K TL + + KD+YL + +
Sbjct: 214 AKLQRA-----------SLRNPVRIEIGTKYSTVSTLQQYYLFMPFAHKDTYLVHLANEQ 262
Query: 1077 PGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
G ++ VF ++ +RL LL +L S +PLH ++Q RL L++F+ SI++ TD
Sbjct: 263 VGHSIIVFTRTVHDAQRLAVLLRLLGFSAIPLHGQLSQTARLGALNKFKAGGRSIMVCTD 322
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195
VAARGLDIP ++ V+++ +P S+ YIHR GRTARA +G ++ L+ ++ L ++ +
Sbjct: 323 VAARGLDIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVTQYDVELLQRIEAA 382
Query: 1196 LEKKVDLPDFP--IDESVLSLIKKRIDLAK--SIEYLESK 1231
+ K++D +FP D ++ L+ +R+ A+ +I L+ K
Sbjct: 383 IGKRLD--EFPGAGDRDMIMLLSERVGEAQRAAIRELQEK 420
Score = 173 bits (438), Expect = 8e-40, Method: Composition-based stats.
Identities = 142/496 (28%), Positives = 215/496 (43%), Gaps = 154/496 (31%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E I A + F PT IQ+ +P AL R D++G A+TGSGKT AF IPIL G+ +
Sbjct: 34 EPICEACEKLHFSAPTDIQAQAIPHALQGR-DVIGLAQTGSGKTAAFSIPILQGL---WD 89
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
+P L+A ILAPTREL+ Q+ I
Sbjct: 90 DP------------------------------------RPLFACILAPTRELSYQISQQI 113
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
G V+ A +VGGM Q L+K PH++VATPGRL + L + L + Y
Sbjct: 114 EALGATIGVRCATIVGGMDMMTQSIALSKRPHVIVATPGRLQD--HLENTKGFSLRSLRY 171
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399
LV+DE DR+++ P I+D++ L+NI +
Sbjct: 172 LVMDEADRLLDLDFGP----IIDKL--------------------LQNI---------PK 198
Query: 400 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG 459
R+T +FSAT+T +K K+ + ++++P +++ K
Sbjct: 199 ERRTMLFSATMT-------------TKVAKLQRA-----------SLRNPVRIEIGTKYS 234
Query: 460 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKT 519
TL + + KD+YL + + G ++ I T+T
Sbjct: 235 TVSTLQQYYLFMPFAHKDTYLVHLANEQVGHSI---------------------IVFTRT 273
Query: 520 LTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 579
+ HD +RL LL +L S +PLH ++
Sbjct: 274 V--------HD--------------------------AQRLAVLLRLLGFSAIPLHGQLS 299
Query: 580 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 639
Q RL L++F+ SI++ TDVAARGLDIP ++ V+++ +P S+ YIHR GRTARA
Sbjct: 300 QTARLGALNKFKAGGRSIMVCTDVAARGLDIPAVDLVVNFDIPTHSKDYIHRVGRTARAG 359
Query: 640 NEGLTVVLIESDEIPL 655
+G +V L+ ++ L
Sbjct: 360 RQGRSVTLVTQYDVEL 375
Score = 59.3 bits (142), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 66/140 (47%), Gaps = 21/140 (15%)
Query: 1354 WD------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 1407
WD A ILAPTREL+ Q+ I G V+ A +VGGM Q L+K PH++
Sbjct: 88 WDDPRPLFACILAPTRELSYQISQQIEALGATIGVRCATIVGGMDMMTQSIALSKRPHVI 147
Query: 1408 VATPGAL-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKA 1462
VATPG L + K L +S+ YL + D L+ D IID L+Q
Sbjct: 148 VATPGRLQDHLENTKGFSL-RSLRYL----VMDEADRLLD---LDFGPIID--KLLQNIP 197
Query: 1463 NSRENALMSKALVSKRKELQ 1482
R L S + +K +LQ
Sbjct: 198 KERRTMLFSATMTTKVAKLQ 217
>gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta]
Length = 410
Score = 211 bits (537), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 239/465 (51%), Gaps = 78/465 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+T+ + +K PT+IQ +P L KD++G AETGSGKT AF +PIL + LE
Sbjct: 4 DTLCKTCIDLKWKEPTRIQQEAIPLTLQG-KDVIGLAETGSGKTAAFALPILQAL---LE 59
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
P + +ALIL PTRELA Q+
Sbjct: 60 QP------------------------------------QRYFALILTPTRELAFQISEQF 83
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKIN 955
G VK +VGGM Q IL K PHI++ATPGRL + ++ F+L +L
Sbjct: 84 DALGSSMGVKTVVLVGGMDMHAQGMILEKKPHIIIATPGRLVDHLENTKGFNLRQL---K 140
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
+LV+DE DR++ E+ IL RV E R+T +FSAT+T
Sbjct: 141 FLVMDEADRILNMDFEVEVDKIL-RVIPRE----RRTLLFSATMT--------------- 180
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 1075
KKV K ++R ++++P V+++ K + L + I KD YL + + +
Sbjct: 181 -KKVQK----LQRA----SLRNPVRVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNE 231
Query: 1076 HPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
G + ++FC + ++ R LL L + +PLH M+Q +R+ L +F+ +N SIL++T
Sbjct: 232 LAGNSFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILIST 291
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++ LY ++
Sbjct: 292 DVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 351
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN 1239
+ K+ LP +P +E + L+++R D+ K+IE + K+ R N
Sbjct: 352 LISKQ--LPLYPTEEEEVMLLQER-DM-KNIEENKKSGKRKRGGN 392
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 138/497 (27%), Positives = 212/497 (42%), Gaps = 156/497 (31%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+T+ + +K PT+IQ +P L KD++G AETGSGKT AF +PIL + LE
Sbjct: 4 DTLCKTCIDLKWKEPTRIQQEAIPLTLQG-KDVIGLAETGSGKTAAFALPILQAL---LE 59
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
P + +ALIL PTRELA Q+
Sbjct: 60 QP------------------------------------QRYFALILTPTRELAFQISEQF 83
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKIN 338
G VK +VGGM Q IL K PHI++ATPGRL + ++ F+L +L
Sbjct: 84 DALGSSMGVKTVVLVGGMDMHAQGMILEKKPHIIIATPGRLVDHLENTKGFNLRQL---K 140
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS 398
+LV+DE DR++ E+ IL + PR+
Sbjct: 141 FLVMDEADRILNMDFEVEVDKILRVI-------PRE------------------------ 169
Query: 399 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458
R+T +FSAT+T KKV K ++R ++++P V+++ K
Sbjct: 170 --RRTLLFSATMT----------------KKVQK----LQR----ASLRNPVRVEVSTKY 203
Query: 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITK 518
+ L + I KD YL + + + G
Sbjct: 204 QTVEKLQQYYIFIPVKFKDVYLVHILNELAG----------------------------- 234
Query: 519 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 578
+S++ + C + ++ R LL L + +PLH M
Sbjct: 235 --------------NSFMIF------------CGTCNNTVRTALLLRNLGFTAVPLHGQM 268
Query: 579 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638
+Q +R+ L +F+ +N SIL++TDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA
Sbjct: 269 SQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARA 328
Query: 639 NNEGLTVVLIESDEIPL 655
G ++ + ++ L
Sbjct: 329 GRSGRSITFVTQYDVEL 345
Score = 61.2 bits (147), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ G VK +VGGM Q IL K PHI++ATPG
Sbjct: 64 YFALILTPTRELAFQISEQFDALGSSMGVKTVVLVGGMDMHAQGMILEKKPHIIIATPGR 123
Query: 1414 LSLKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENA 1468
L +++LE+ N R +L D MD ++ + +++ R
Sbjct: 124 L----------VDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTL 173
Query: 1469 LMSKALVSKRKELQ 1482
L S + K ++LQ
Sbjct: 174 LFSATMTKKVQKLQ 187
Score = 40.4 bits (93), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ LY ++ + K+ LP +P +E + L+++R
Sbjct: 317 DYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQ--LPLYPTEEEEVMLLQER- 373
Query: 1299 DLAKSIEYLESKIKKNRPDN 1318
D+ K+IE + K+ R N
Sbjct: 374 DM-KNIEENKKSGKRKRGGN 392
>gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
Length = 455
Score = 211 bits (537), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 230/467 (49%), Gaps = 88/467 (18%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + ++ AL Q G+K+PT+IQS +P AL R DI+G AETGSGKT AF +PIL
Sbjct: 24 LGLIDPLLEALEQVGYKSPTEIQSESLPHALEGR-DIIGVAETGSGKTAAFALPIL---- 78
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
++L EE L+A +LAPTRELA Q+
Sbjct: 79 ------------------------QKLWEEPKG-----------LFACVLAPTRELAYQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G + A +VGGM Q L K PH++VATPGRL + HL E
Sbjct: 104 SQQFEALGAAMGARCAVIVGGMDLPTQAIALAKRPHVVVATPGRLLQ-------HLEETK 156
Query: 951 ---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + +LV+DE DR+++ P + IL + + R T++FSAT+T
Sbjct: 157 GFSLRTLKFLVLDEADRLLDMDFGPAIDKILKLI-----PKERTTYLFSATMT------- 204
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
SK K+ + ++ +P V+++ K TL + +L +K
Sbjct: 205 ------SKVAKLQRA-----------SLVNPVRVEVSGKYQTVSTLLQHYLLVPLKDKVV 247
Query: 1068 YLYYF---ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
L Y + Q+ ++F ++ + L+ +L L +PLH ++Q QRL L +F+
Sbjct: 248 MLIYLANSLAQN--SIIIFTRTVRDARLLSIILRTLGFPAVPLHGQLSQSQRLGALGKFK 305
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
IL+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G + L+
Sbjct: 306 SGGRKILVATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRAGKAITLVTQY 365
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ L ++ + KK+D +P D+ + L+K+R+ A+ + E K
Sbjct: 366 DVELLQRIEKVIGKKMD--AWPTDDEEVLLLKERVSEAERLAVNEIK 410
Score = 173 bits (438), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 146/505 (28%), Positives = 211/505 (41%), Gaps = 164/505 (32%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + ++ AL Q G+K+PT+IQS +P AL R DI+G AETGSGKT AF +PIL
Sbjct: 24 LGLIDPLLEALEQVGYKSPTEIQSESLPHALEGR-DIIGVAETGSGKTAAFALPIL---- 78
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
++L EE L+A +LAPTRELA Q+
Sbjct: 79 ------------------------QKLWEEPKG-----------LFACVLAPTRELAYQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G + A +VGGM Q L K PH++VATPGRL + HL E
Sbjct: 104 SQQFEALGAAMGARCAVIVGGMDLPTQAIALAKRPHVVVATPGRLLQ-------HLEETK 156
Query: 334 ---LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + +LV+DE DR+++ P + IL + P++
Sbjct: 157 GFSLRTLKFLVLDEADRLLDMDFGPAIDKILKLI-------PKE---------------- 193
Query: 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450
R T++FSAT+T SK K+ + ++ +P
Sbjct: 194 ----------RTTYLFSATMT-------------SKVAKLQRA-----------SLVNPV 219
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
V+++ K TL + +L +K L Y +L +
Sbjct: 220 RVEVSGKYQTVSTLLQHYLLVPLKDKVVMLIYL-----ANSLAQ---------------- 258
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
S I+ +D+ L IL RTL F
Sbjct: 259 -----------NSIIIFTRTVRDARLLSIIL----RTLGF-------------------P 284
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+PLH ++Q QRL L +F+ IL+ATDVA+RGLDIP ++ VI+Y +P S+ YIH
Sbjct: 285 AVPLHGQLSQSQRLGALGKFKSGGRKILVATDVASRGLDIPSVDVVINYDIPTHSKDYIH 344
Query: 631 RSGRTARANNEGLTVVLIESDEIPL 655
R GRTARA G + L+ ++ L
Sbjct: 345 RVGRTARAGRAGKAITLVTQYDVEL 369
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A +LAPTRELA Q+ G + A +VGGM Q L K PH++VATPG L
Sbjct: 90 ACVLAPTRELAYQISQQFEALGAAMGARCAVIVGGMDLPTQAIALAKRPHVVVATPGRL- 148
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKAL 1474
L+ ++ K K + + D L DMD + +++ R L S +
Sbjct: 149 LQHLEETKGFSLRTLKFLVLDEADRLL-----DMDFGPAIDKILKLIPKERTTYLFSATM 203
Query: 1475 VSKRKELQ 1482
SK +LQ
Sbjct: 204 TSKVAKLQ 211
>gi|403164869|ref|XP_003324940.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375165434|gb|EFP80521.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 518
Score = 211 bits (537), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 225/454 (49%), Gaps = 85/454 (18%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
IPE + A +K PT IQ+ +P AL R DI+G A+TGSGKT AF +P+L + N
Sbjct: 80 IPE-LCEACRTLNYKRPTPIQAESIPYALEDR-DIIGLAQTGSGKTAAFALPVLQSLWN- 136
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+P + +LAPTRELA Q+
Sbjct: 137 --DP------------------------------------KPFFCCVLAPTRELAYQISQ 158
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL-----T 949
G VK A +VGG+ Q L+K PHI+VATPGRL H HL
Sbjct: 159 QFDALGSTIGVKTAVIVGGIDMMSQAIALSKRPHIIVATPGRL-------HDHLENTKGF 211
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + YL++DE DR+++ P + IL + + R+T++FSAT+T
Sbjct: 212 SLRNLKYLIMDEADRLLDMDFGPVIDKILKVI-----PRERRTYLFSATMT--------- 257
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
+K K+ + ++ SP V ++ K L + + KD+YL
Sbjct: 258 ----TKVAKLQRA-----------SLVSPVKVQMSTKYDTVDGLVQLYMFFPFKNKDAYL 302
Query: 1070 YYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + + G++++ F ++ RL+ +L +L +PLH ++Q RL +L++F+ N
Sbjct: 303 VYLVNELSGKSMIIFTRTVYDANRLSIILRLLGFPSIPLHGQLSQSTRLSSLNQFKSGNR 362
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
SIL+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G + L+ ++ L
Sbjct: 363 SILVATDVASRGLDIPTVDCVINFDLPTNSKDYIHRVGRTARAGRSGKAVTLVTQYDVEL 422
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
++ + KK++ +FP D+ + L+ +R+ A
Sbjct: 423 LQRIEGVIGKKME--EFPHDKEQVFLLSERVGEA 454
Score = 174 bits (440), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 149/543 (27%), Positives = 227/543 (41%), Gaps = 177/543 (32%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
IPE + A +K PT IQ+ +P AL R DI+G A+TGSGKT AF +P+L + N
Sbjct: 80 IPE-LCEACRTLNYKRPTPIQAESIPYALEDR-DIIGLAQTGSGKTAAFALPVLQSLWN- 136
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+P + +LAPTRELA Q+
Sbjct: 137 --DP------------------------------------KPFFCCVLAPTRELAYQISQ 158
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL-----T 332
G VK A +VGG+ Q L+K PHI+VATPGRL H HL
Sbjct: 159 QFDALGSTIGVKTAVIVGGIDMMSQAIALSKRPHIIVATPGRL-------HDHLENTKGF 211
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YL++DE DR+++ P + IL + PR+
Sbjct: 212 SLRNLKYLIMDEADRLLDMDFGPVIDKILKVI-------PRE------------------ 246
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+T++FSAT+T +K K+ + ++ SP V
Sbjct: 247 --------RRTYLFSATMT-------------TKVAKLQRA-----------SLVSPVKV 274
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
++ K L + + KD+YL Y + + G+++
Sbjct: 275 QMSTKYDTVDGLVQLYMFFPFKNKDAYLVYLVNELSGKSM-------------------- 314
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
I T+T+ ++ RL+ +L +L +
Sbjct: 315 -IIFTRTVYDA----------------------------------NRLSIILRLLGFPSI 339
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLH ++Q RL +L++F+ N SIL+ATDVA+RGLDIP ++ VI++ +P S+ YIHR
Sbjct: 340 PLHGQLSQSTRLSSLNQFKSGNRSILVATDVASRGLDIPTVDCVINFDLPTNSKDYIHRV 399
Query: 633 GRTARANNEGLTVVLIESDEIPLKTKF------NLQEEENNEE------EERAEADKEKT 680
GRTARA G V L+ ++ L + ++E +++E E EA +E T
Sbjct: 400 GRTARAGRSGKAVTLVTQYDVELLQRIEGVIGKKMEEFPHDKEQVFLLSERVGEASREAT 459
Query: 681 EDI 683
+I
Sbjct: 460 REI 462
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 35/61 (57%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ +LAPTRELA Q+ G VK A +VGG+ Q L+K PHI+VATPG
Sbjct: 141 FFCCVLAPTRELAYQISQQFDALGSTIGVKTAVIVGGIDMMSQAIALSKRPHIIVATPGR 200
Query: 1414 L 1414
L
Sbjct: 201 L 201
>gi|449297073|gb|EMC93092.1| hypothetical protein BAUCODRAFT_77654 [Baudoinia compniacensis UAMH
10762]
Length = 496
Score = 211 bits (536), Expect = 3e-51, Method: Composition-based stats.
Identities = 152/483 (31%), Positives = 231/483 (47%), Gaps = 78/483 (16%)
Query: 723 EEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRA 782
E+I + + +L + K Q A+ + + VD + + + E++ A
Sbjct: 14 EDISTSKQPQSQLDEDGGKGQAEDGADGKAI-VDKLEASAEAEEEKSFADLGVNESLCDA 72
Query: 783 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842
GFKTPT IQ +P AL R DI+G AETGSGKT AF +PIL + L +P
Sbjct: 73 CTSLGFKTPTAIQREAIPLALSGR-DIIGLAETGSGKTAAFALPILQAL---LHDP---- 124
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 902
+ L+LAPTRELA Q+ G
Sbjct: 125 --------------------------------QPFFGLVLAPTRELAYQISQQFEALGSL 152
Query: 903 TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVI 959
V+ A +VGGM Q L K PHI+VATPGRL L H T+ L + YL++
Sbjct: 153 IRVRCAVIVGGMDMVPQAIALAKKPHIVVATPGRL-----LDHLENTKGFSLRSLKYLIM 207
Query: 960 DETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 1019
DE DR+++ P L IL + + R+T +FSAT+ L N + +V
Sbjct: 208 DEADRLLDLDFGPILDKILQVL-----PRERRTALFSATMNTKLDNLT--RAALRNPVRV 260
Query: 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 1079
S S + + +LL + I H KD YL + + + G+
Sbjct: 261 SISTSSYQTVANLL---------------------QQYIFIPHKHKDVYLIHLLTEFSGQ 299
Query: 1080 T-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
T ++F +++ +RL LL L S +PLH + Q RL L++FR + SIL+ATDVAA
Sbjct: 300 TCILFTRTVTETQRLAFLLRALNFSAIPLHGQLPQSARLGALNKFRSGSRSILVATDVAA 359
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++ VI++ +P S+ Y+HR GRTARA G+ + ++ ++ ++ ++ +L +
Sbjct: 360 RGLDIPSVDLVINFDLPPDSKTYVHRVGRTARAGKSGVAVSVVTQYDVEVFQRIEKALGR 419
Query: 1199 KVD 1201
K++
Sbjct: 420 KLE 422
Score = 180 bits (456), Expect = 6e-42, Method: Composition-based stats.
Identities = 162/576 (28%), Positives = 237/576 (41%), Gaps = 162/576 (28%)
Query: 106 EEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRA 165
E+I + + +L + K Q A+ + + VD + + + E++ A
Sbjct: 14 EDISTSKQPQSQLDEDGGKGQAEDGADGKAI-VDKLEASAEAEEEKSFADLGVNESLCDA 72
Query: 166 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225
GFKTPT IQ +P AL R DI+G AETGSGKT AF +PIL + L +P
Sbjct: 73 CTSLGFKTPTAIQREAIPLALSGR-DIIGLAETGSGKTAAFALPILQAL---LHDP---- 124
Query: 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 285
+ L+LAPTRELA Q+ G
Sbjct: 125 --------------------------------QPFFGLVLAPTRELAYQISQQFEALGSL 152
Query: 286 TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVI 342
V+ A +VGGM Q L K PHI+VATPGRL L H T+ L + YL++
Sbjct: 153 IRVRCAVIVGGMDMVPQAIALAKKPHIVVATPGRL-----LDHLENTKGFSLRSLKYLIM 207
Query: 343 DETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402
DE DR+++ P L IL + PR+ R+
Sbjct: 208 DEADRLLDLDFGPILDKILQVL-------PRE--------------------------RR 234
Query: 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
T +FSAT+ L N + +VS S + + +LL
Sbjct: 235 TALFSATMNTKLDNL--TRAALRNPVRVSISTSSYQTVANLL------------------ 274
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
+ I H KD YL + + + G+T I T+T+TE
Sbjct: 275 ---QQYIFIPHKHKDVYLIHLLTEFSGQTC---------------------ILFTRTVTE 310
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+ +RL LL L S +PLH + Q
Sbjct: 311 T----------------------------------QRLAFLLRALNFSAIPLHGQLPQSA 336
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
RL L++FR + SIL+ATDVAARGLDIP ++ VI++ +P S+ Y+HR GRTARA G
Sbjct: 337 RLGALNKFRSGSRSILVATDVAARGLDIPSVDLVINFDLPPDSKTYVHRVGRTARAGKSG 396
Query: 643 LTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKE 678
+ V ++ ++ + + +++ + EERA +E
Sbjct: 397 VAVSVVTQYDVEVFQR--IEKALGRKLEERAVGREE 430
Score = 55.1 bits (131), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG L
Sbjct: 129 GLVLAPTRELAYQISQQFEALGSLIRVRCAVIVGGMDMVPQAIALAKKPHIVVATPGRL 187
>gi|392595723|gb|EIW85046.1| DEAD-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 465
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 147/472 (31%), Positives = 236/472 (50%), Gaps = 90/472 (19%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+ +++AL Q FK PT+IQS +PSALL R DI+G AETGSGKT AF +PIL
Sbjct: 24 DPLLKALDQVNFKQPTEIQSQALPSALLGR-DIIGVAETGSGKTAAFALPIL-------- 74
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
++L EE L+A ILAPTRELA Q+
Sbjct: 75 --------------------QKLWEEPKG-----------LFACILAPTRELAYQISQQF 103
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
G V+ +VGG+ Q L K PHI+VATPGRL + +Q + L + +
Sbjct: 104 ESLGSAMGVRCLVLVGGVDRMPQAVALAKRPHIIVATPGRLNDHLQ--NTKGFSLRSLKF 161
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
LV+DE DR+++ P++ IL + + R T++FSAT+T +K
Sbjct: 162 LVLDEADRLLDMDFGPDIDQILKVI-----PKERTTYLFSATMT-------------TKV 203
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
K+ + ++ +P V+++ K TL + + +KD +L Y +
Sbjct: 204 AKLQRA-----------SLSNPVRVEVSSKYQTVSTLLQYYLFIPLAQKDVHLVYLVNSL 252
Query: 1077 PGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
+++ F ++ +RL+ +L L +PLH ++Q QRL L +F+ +IL+ATD
Sbjct: 253 ASNSIILFTRTVHDAQRLSIVLRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRNILVATD 312
Query: 1136 VAA----------------RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
VA+ RGLD+P ++ VI++ +P S+ YIHR GRTARA G ++
Sbjct: 313 VASRHVLHSGFMGPTDHHYRGLDLPSVDVVINFDIPSHSKDYIHRVGRTARAGRSGKSVT 372
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ ++ L ++ + KK++L +P DE ++L+++R++ A + E K
Sbjct: 373 IVTQYDVELIQRIETVIAKKMEL--WPTDEEEVALLRERVEEAGRVAINELK 422
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 142/512 (27%), Positives = 216/512 (42%), Gaps = 170/512 (33%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+ +++AL Q FK PT+IQS +PSALL R DI+G AETGSGKT AF +PIL
Sbjct: 24 DPLLKALDQVNFKQPTEIQSQALPSALLGR-DIIGVAETGSGKTAAFALPIL-------- 74
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
++L EE L+A ILAPTRELA Q+
Sbjct: 75 --------------------QKLWEEPKG-----------LFACILAPTRELAYQISQQF 103
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
G V+ +VGG+ Q L K PHI+VATPGRL + +Q + L + +
Sbjct: 104 ESLGSAMGVRCLVLVGGVDRMPQAVALAKRPHIIVATPGRLNDHLQ--NTKGFSLRSLKF 161
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399
LV+DE DR+++ P++ IL + P++
Sbjct: 162 LVLDEADRLLDMDFGPDIDQILKVI-------PKE------------------------- 189
Query: 400 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG 459
R T++FSAT+T +K K+ + ++ +P V+++ K
Sbjct: 190 -RTTYLFSATMT-------------TKVAKLQRA-----------SLSNPVRVEVSSKYQ 224
Query: 460 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKT 519
TL + + +KD +L Y + ++ S I+ T +
Sbjct: 225 TVSTLLQYYLFIPLAQKDVHLVYLV---------------NSLASNSIILFTRTV----- 264
Query: 520 LTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 579
HD +RL+ +L L +PLH ++
Sbjct: 265 ---------HD--------------------------AQRLSIVLRTLGFPAVPLHGQLS 289
Query: 580 QRQRLKNLDRFRDQNNSILLATDVAA----------------RGLDIPGIEHVIHYHVPR 623
Q QRL L +F+ +IL+ATDVA+ RGLD+P ++ VI++ +P
Sbjct: 290 QSQRLGALGKFKSGGRNILVATDVASRHVLHSGFMGPTDHHYRGLDLPSVDVVINFDIPS 349
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
S+ YIHR GRTARA G +V ++ ++ L
Sbjct: 350 HSKDYIHRVGRTARAGRSGKSVTIVTQYDVEL 381
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
A ILAPTRELA Q+ G V+ +VGG+ Q L K PHI+VATPG L
Sbjct: 86 ACILAPTRELAYQISQQFESLGSAMGVRCLVLVGGVDRMPQAVALAKRPHIIVATPGRLN 145
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALM 1470
+ K L +S+++L + D L DMD D + +++ R L
Sbjct: 146 DHLQNTKGFSL-RSLKFL----VLDEADRLL-----DMDFGPDIDQILKVIPKERTTYLF 195
Query: 1471 SKALVSKRKELQ 1482
S + +K +LQ
Sbjct: 196 SATMTTKVAKLQ 207
Score = 41.2 bits (95), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ ++ ++ L ++ + KK++L +P DE ++L+++R+
Sbjct: 353 DYIHRVGRTARAGRSGKSVTIVTQYDVELIQRIETVIAKKMEL--WPTDEEEVALLRERV 410
Query: 1299 DLAKSIEYLESK 1310
+ A + E K
Sbjct: 411 EEAGRVAINELK 422
>gi|149235261|ref|XP_001523509.1| ATP-dependent rRNA helicase RRP3 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152060561|sp|A5E6W6.1|RRP3_LODEL RecName: Full=ATP-dependent rRNA helicase RRP3
gi|146452918|gb|EDK47174.1| ATP-dependent rRNA helicase RRP3 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 504
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 148/484 (30%), Positives = 237/484 (48%), Gaps = 88/484 (18%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +F++ ++ ++ + PT IQ+ +P AL KDIVG AETGSGKT AF IPIL
Sbjct: 100 FTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQG-KDIVGIAETGSGKTAAFAIPILQ 158
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ + YAL+LAPTRELA
Sbjct: 159 TLYTAAQ---------------------------------------PYYALVLAPTRELA 179
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q++ G ++ C++GGMS +Q R L + PH+++ATPGRL + ++ H
Sbjct: 180 FQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMRKPHVIIATPGRLIDHLE--HTKGF 237
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL---KNS 1006
L K+ YLV+DE DRMI+ + + IL ++ S R T++++AT++ + K S
Sbjct: 238 SLKKLQYLVMDEVDRMIDLDYAKAIDQILKQI----PSHQRITYLYTATMSREIEKFKRS 293
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
LN SP V++ + + L ++ L + KD
Sbjct: 294 LN----------------------------SPVQVEIVKLEKVPDKLKQTMCLTSPNTKD 325
Query: 1067 SYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
+ L + L R ++F ++ +R +L L + LH M Q +RL +++F+
Sbjct: 326 TRLIQIVNLDSMKRVIIFTRTVVHTRRCCLMLLNLGFKCVELHGQMPQSRRLGAINKFK- 384
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
IL+ATDVAARGLDIP ++ VI+Y +P + +YIHR GRTARA G + L+ +
Sbjct: 385 AGTPILVATDVAARGLDIPAVDLVINYDIPDPT-LYIHRVGRTARAGKAGKAISLVTQYD 443
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID--LAKSIEYLESKIKKNRPDNWLHR 1243
+ Y+++ N+L K+ D P+DE + ++ +D L+K+I+ L + DN L
Sbjct: 444 LESYLRIENTLGTKLPKEDLPLDE--MQGLQVSVDRALSKAIQML----RNEENDNKLRH 497
Query: 1244 SGRT 1247
GR+
Sbjct: 498 RGRS 501
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 105/212 (49%), Gaps = 42/212 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +F++ ++ ++ + PT IQ+ +P AL KDIVG AETGSGKT AF IPIL
Sbjct: 100 FTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQG-KDIVGIAETGSGKTAAFAIPILQ 158
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ + YAL+LAPTRELA
Sbjct: 159 TLYTAAQ---------------------------------------PYYALVLAPTRELA 179
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q++ G ++ C++GGMS +Q R L + PH+++ATPGRL + ++ H
Sbjct: 180 FQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMRKPHVIIATPGRLIDHLE--HTKGF 237
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRV 364
L K+ YLV+DE DRMI+ + + IL ++
Sbjct: 238 SLKKLQYLVMDEVDRMIDLDYAKAIDQILKQI 269
Score = 93.2 bits (230), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 15/215 (6%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
S+K+LQ L+ + +++DL I + L K + H ++ +YLY T+ E
Sbjct: 238 SLKKLQYLVMDEVDRMIDLDYAKAIDQIL---KQIPSH-QRITYLY-------TATMSRE 286
Query: 496 IQDL-LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNS 553
I+ ++ SP V++ + + L ++ L + KD+ L + L R ++F +
Sbjct: 287 IEKFKRSLNSPVQVEIVKLEKVPDKLKQTMCLTSPNTKDTRLIQIVNLDSMKRVIIFTRT 346
Query: 554 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613
+ +R +L L + LH M Q +RL +++F+ IL+ATDVAARGLDIP +
Sbjct: 347 VVHTRRCCLMLLNLGFKCVELHGQMPQSRRLGAINKFK-AGTPILVATDVAARGLDIPAV 405
Query: 614 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+ VI+Y +P + +YIHR GRTARA G + L+
Sbjct: 406 DLVINYDIPDPT-LYIHRVGRTARAGKAGKAISLV 439
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ AL+LAPTRELA Q++ G ++ C++GGMS +Q R L + PH+++ATPG
Sbjct: 167 YYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMRKPHVIIATPGR 226
Query: 1414 L 1414
L
Sbjct: 227 L 227
Score = 44.3 bits (103), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P ++HR GRTARA G + L+ ++ Y+++ N+L K+ D P+DE + ++
Sbjct: 416 PTLYIHRVGRTARAGKAGKAISLVTQYDLESYLRIENTLGTKLPKEDLPLDE--MQGLQV 473
Query: 1297 RID--LAKSIEYLESKIKKNR 1315
+D L+K+I+ L ++ N+
Sbjct: 474 SVDRALSKAIQMLRNEENDNK 494
>gi|212526914|ref|XP_002143614.1| ATP-dependent RNA helicase , putative [Talaromyces marneffei ATCC
18224]
gi|210073012|gb|EEA27099.1| ATP-dependent RNA helicase , putative [Talaromyces marneffei ATCC
18224]
Length = 474
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 140/449 (31%), Positives = 222/449 (49%), Gaps = 95/449 (21%)
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL +++K +
Sbjct: 64 GYKAPTAIQAESIPLALQNR-DLIGLAETGSGKTAAFALPILQALMDKPQ---------- 112
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
+ L+LAPTRELA Q+ G V+
Sbjct: 113 -----------------------------PFFGLVLAPTRELAYQISEAFEALGSTISVR 143
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETD 963
+VGGM Q + K PHI+VATPGRL L H T+ L + YLV+DE D
Sbjct: 144 SVVLVGGMDMVPQAIAIGKRPHIIVATPGRL-----LDHLENTKGFSLRSLKYLVMDEAD 198
Query: 964 RMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSK 1015
R+++ P I+D++ + + R+TF+FSAT++ SL N L + +K
Sbjct: 199 RLLDMDFGP----IIDKI-LKVLPRERRTFLFSATMSSKVESLQRASLSNPLRVSVSSNK 253
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 1075
+ VS TL + + H KD +L + + +
Sbjct: 254 YQTVS-------------------------------TLLQYYMFIPHKHKDVHLIWLLNE 282
Query: 1076 HPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
H G+T ++F +I RL L L S + LH ++Q RL ++ +FR + SIL+AT
Sbjct: 283 HIGQTTIIFTRTIHETNRLALLTRFLGFSAIALHGQLSQSSRLASISKFRSKTRSILIAT 342
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDIP ++ V++Y + S+ ++HR GRTARA G + L+ ++ +++++
Sbjct: 343 DVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVWLRIEK 402
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
+L+KK LP++ +++ + ++ R+ A+
Sbjct: 403 ALDKK--LPEYKVEKDEVLILSDRVSEAQ 429
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 151/554 (27%), Positives = 222/554 (40%), Gaps = 193/554 (34%)
Query: 106 EEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRA 165
+E+ D SS++ Q + +K SA K T + + Q+ E ET+
Sbjct: 18 DEVSDDASSSEEEVQDRDEKDEADSAPK------TFKDLGLIPQLCEAC-----ETL--- 63
Query: 166 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225
G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL +++K +
Sbjct: 64 ----GYKAPTAIQAESIPLALQNR-DLIGLAETGSGKTAAFALPILQALMDKPQ------ 112
Query: 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 285
+ L+LAPTRELA Q+ G
Sbjct: 113 ---------------------------------PFFGLVLAPTRELAYQISEAFEALGST 139
Query: 286 TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVI 342
V+ +VGGM Q + K PHI+VATPGRL L H T+ L + YLV+
Sbjct: 140 ISVRSVVLVGGMDMVPQAIAIGKRPHIIVATPGRL-----LDHLENTKGFSLRSLKYLVM 194
Query: 343 DETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402
DE DR+++ P + IL + PR+ R+
Sbjct: 195 DEADRLLDMDFGPIIDKILKVL-------PRE--------------------------RR 221
Query: 403 TFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
TF+FSAT++ SL N L + +K + VS
Sbjct: 222 TFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVS----------------------- 258
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
TL + + H KD +L + + +H G+T I
Sbjct: 259 --------TLLQYYMFIPHKHKDVHLIWLLNEHIGQT---------------------TI 289
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
T+T+ E+ RL L L S + L
Sbjct: 290 IFTRTIHET----------------------------------NRLALLTRFLGFSAIAL 315
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H ++Q RL ++ +FR + SIL+ATDVAARGLDIP ++ V++Y + S+ ++HR GR
Sbjct: 316 HGQLSQSSRLASISKFRSKTRSILIATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGR 375
Query: 635 TARANNEGLTVVLI 648
TARA G + L+
Sbjct: 376 TARAGKSGKAISLV 389
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
L+LAPTRELA Q+ G V+ +VGGM Q + K PHI+VATPG L
Sbjct: 116 GLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRPHIIVATPGRLL 175
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI--IIDDENLIQPKANSRENA 1468
+ K L +S++YL + D L DMD IID + P+ R
Sbjct: 176 DHLENTKGFSL-RSLKYL----VMDEADRLL-----DMDFGPIIDKILKVLPR--ERRTF 223
Query: 1469 LMSKALVSKRKELQ 1482
L S + SK + LQ
Sbjct: 224 LFSATMSSKVESLQ 237
>gi|390598048|gb|EIN07447.1| DEAD-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 449
Score = 211 bits (536), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 151/484 (31%), Positives = 236/484 (48%), Gaps = 90/484 (18%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
E TS E F + + ++ AL Q +K PT IQ +P AL R DI+G A
Sbjct: 6 EASTSTAEPTFKSL------GLINPLLEALDQLKYKEPTDIQREALPHALEGR-DIIGVA 58
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
TGSGKT AF +PIL ++L EE
Sbjct: 59 STGSGKTAAFALPIL----------------------------QKLWEEP---------- 80
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
L+A +LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VAT
Sbjct: 81 -RGLFACVLAPTRELAYQISQQFEALGSAMGVRCAVLVGGMDLIDQAVALAKKPHIIVAT 139
Query: 934 PGRLWEFIQLGHFHLTE-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 988
PGRL + HLTE L + +LV+DE DR+++ P + IL + +
Sbjct: 140 PGRLQQ-------HLTETKGFSLRGLKFLVLDEADRLLDLDFGPVIDQILKII-----PK 187
Query: 989 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG 1048
R T++FSAT+T +K K+ + ++ +P V+++ K
Sbjct: 188 ERTTYLFSATMT-------------TKVAKLQRA-----------SLSNPIRVEVSSKYQ 223
Query: 1049 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPL 1107
TL + + +KD +L Y +++ F ++ +RL+ +L +L +PL
Sbjct: 224 TVSTLLQYYLFIPLSQKDVHLIYLANSLASNSIIIFTRTVHDAQRLSIMLRILGFPAVPL 283
Query: 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
H ++Q RL L +F+ +L+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GR
Sbjct: 284 HGQLSQSARLGALAKFKSGGRKVLVATDVASRGLDIPSVDIVINFDIPNHSKDYIHRVGR 343
Query: 1168 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEY 1227
TARA G ++ L+ ++ L ++ +EKK++L +P D+ ++L+++R++ A +
Sbjct: 344 TARAGRSGKSITLVTQYDVELIQRIEEVIEKKMEL--WPTDKEEIALLRERVNEAGRLAI 401
Query: 1228 LESK 1231
E K
Sbjct: 402 NEMK 405
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 152/549 (27%), Positives = 223/549 (40%), Gaps = 175/549 (31%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
E TS E F + + ++ AL Q +K PT IQ +P AL R DI+G A
Sbjct: 6 EASTSTAEPTFKSL------GLINPLLEALDQLKYKEPTDIQREALPHALEGR-DIIGVA 58
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
TGSGKT AF +PIL ++L EE
Sbjct: 59 STGSGKTAAFALPIL----------------------------QKLWEEP---------- 80
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
L+A +LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VAT
Sbjct: 81 -RGLFACVLAPTRELAYQISQQFEALGSAMGVRCAVLVGGMDLIDQAVALAKKPHIIVAT 139
Query: 317 PGRLWEFIQLGHFHLTE-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 371
PGRL + HLTE L + +LV+DE DR+++ P + IL +
Sbjct: 140 PGRLQQ-------HLTETKGFSLRGLKFLVLDEADRLLDLDFGPVIDQILKII------- 185
Query: 372 PRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 431
P++ R T++FSAT+T +K K+
Sbjct: 186 PKE--------------------------RTTYLFSATMT-------------TKVAKLQ 206
Query: 432 KGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
+ ++ +P V+++ K TL + + +KD +L Y
Sbjct: 207 RA-----------SLSNPIRVEVSSKYQTVSTLLQYYLFIPLSQKDVHLIY--------- 246
Query: 492 LCEEIQDLLN-IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550
L N + S I+ T + HD + + IL P
Sbjct: 247 -------LANSLASNSIIIFTRTV--------------HDAQRLSIMLRILGFPA----- 280
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610
+PLH ++Q RL L +F+ +L+ATDVA+RGLDI
Sbjct: 281 ---------------------VPLHGQLSQSARLGALAKFKSGGRKVLVATDVASRGLDI 319
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEE 670
P ++ VI++ +P S+ YIHR GRTARA G ++ L+ ++ L + EE ++
Sbjct: 320 PSVDIVINFDIPNHSKDYIHRVGRTARAGRSGKSITLVTQYDVELIQRI---EEVIEKKM 376
Query: 671 ERAEADKEK 679
E DKE+
Sbjct: 377 ELWPTDKEE 385
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A +LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG L
Sbjct: 85 ACVLAPTRELAYQISQQFEALGSAMGVRCAVLVGGMDLIDQAVALAKKPHIIVATPGRL 143
Score = 43.5 bits (101), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N +++HR GRTARA G ++ L+ ++ L ++ +EKK++L +P D+ ++L+
Sbjct: 332 NHSKDYIHRVGRTARAGRSGKSITLVTQYDVELIQRIEEVIEKKMEL--WPTDKEEIALL 389
Query: 1295 KKRIDLAKSIEYLESK 1310
++R++ A + E K
Sbjct: 390 RERVNEAGRLAINEMK 405
>gi|400290741|ref|ZP_10792768.1| ATP-dependent RNA helicase [Streptococcus ratti FA-1 = DSM 20564]
gi|399921532|gb|EJN94349.1| ATP-dependent RNA helicase [Streptococcus ratti FA-1 = DSM 20564]
Length = 517
Score = 210 bits (535), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 215/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ E I+ A+ + GF P+ IQ + +P AL A KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLTEDILSAVEKAGFTEPSPIQELTIPLAL-AGKDVIGQAQTGTGKTAAFGLPTL- 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
NK+ + N + AL++APTRELA
Sbjct: 61 ---NKINIAS-----------------------------------NLVQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 H---VETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 ----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLIDVEQPDLAIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 125 bits (313), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 127/262 (48%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ E I+ A+ + GF P+ IQ + +P AL A KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLTEDILSAVEKAGFTEPSPIQELTIPLAL-AGKDVIGQAQTGTGKTAAFGLPTL- 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
NK+ + N + AL++APTRELA
Sbjct: 61 ---NKINIAS-----------------------------------NLVQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 H---VETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLIDVEQPDLAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVSPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I SR+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPESRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704901|ref|YP_005203360.1| ATP-dependent RNA helicase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282604|gb|EDT48028.1| DEAD/DEAH box helicase [Streptococcus infantarius subsp. infantarius
ATCC BAA-102]
gi|374681600|gb|AEZ61889.1| ATP-dependent RNA helicase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 533
Score = 210 bits (535), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 137/432 (31%), Positives = 215/432 (49%), Gaps = 76/432 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL- 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
D+ D+ +RN + AL++APTRELA
Sbjct: 61 ------------DKIDT--------------------------SRNLVQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLE 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN-SLN 1008
+ L++DE D M+ G +++ I+ RV + RQT +FSAT+ +K +N
Sbjct: 143 H---VETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPEPIKRIGVN 194
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
+K+P+ V + K T+ + + + K +EK D+
Sbjct: 195 F-------------------------MKNPEHVKIAAKELTTELIDQYYLRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 -YLAIIENLTKK 360
Score = 126 bits (317), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 130/269 (48%), Gaps = 51/269 (18%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL- 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
D+ D+ +RN + AL++APTRELA
Sbjct: 61 ------------DKIDT--------------------------SRNLVQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLE 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ L++DE D M+ G +++ I+ RV + RQT++ S PE + R+
Sbjct: 143 H---VETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPE---PIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLK 421
+ P + + LT L + L+
Sbjct: 192 GVNFMKNPEHVKIAAKELTTELIDQYYLR 220
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K+P+ V + K T+ + + + K +EK D+ + P ++VF + V L
Sbjct: 196 MKNPEHVKIAAKELTTELIDQYYLRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 17/132 (12%)
Query: 1347 SRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 1406
SRNL AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI
Sbjct: 66 SRNL---VQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHI 122
Query: 1407 LVATPGALSLKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKA 1462
+V TPG L +DL K +E++E+ I + D L +M + D E +I
Sbjct: 123 VVGTPGRL----LDLIKRKALKLEHVETLI-LDEADEML-----NMGFLEDIEAIISRVP 172
Query: 1463 NSRENALMSKAL 1474
SR+ L S +
Sbjct: 173 ESRQTLLFSATM 184
>gi|429328718|gb|AFZ80478.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 618
Score = 210 bits (534), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 160/546 (29%), Positives = 272/546 (49%), Gaps = 104/546 (19%)
Query: 760 NEDMFVQMAEWVKFN-----IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 814
+E++ ++WV+ IP ++R L + +PT IQ + + +L+ DIV ++E
Sbjct: 78 DEEILRDTSDWVQLAEPDHPIPIAVLRNLCKNDMVSPTDIQRLTLKPSLVENNDIVISSE 137
Query: 815 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTR 874
TGSGKTLAF +PI+ + L +E+V+E
Sbjct: 138 TGSGKTLAFVLPIVLSL----------------LSNRSEDVIE----------------- 164
Query: 875 NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 934
+L+L PTRELAIQV+N + + T ++V ++GG+S +KQ R+L K P I+VATP
Sbjct: 165 ----SLVLLPTRELAIQVKNIFISIVENTILRVVPIIGGISVQKQTRLLKKNPAIVVATP 220
Query: 935 GRLWEFIQLGHFHLTE--LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR-Q 991
GR+ EFI+ TE +++ +LV+DE DR +E F EL+ I+ V +P+ +
Sbjct: 221 GRIAEFIE----EETEKKPFELKFLVLDEADRFVEDNSFRELQKIVSHV-----QKPKMR 271
Query: 992 TFVFSATLTHSLKNSLN----LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 1047
F+ SAT+ N ++ LK + VS +L++ + K
Sbjct: 272 NFICSATILRMNSNLISLFKLLKMKNPVTCVVSDRQQVALPYDELISTGALYKNSSDIKT 331
Query: 1048 GITKTLTESKILCKHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTML-- 1100
+ + LT I ++K+ L ++ H R L+F N+IS V RL LL+++
Sbjct: 332 SMPENLTFKVIKTLENDKELKLIACLVDHLSQTENSRCLIFVNTISYVYRLEALLSLILW 391
Query: 1101 -----------KCSPL----------PLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
C L LH+ + Q+QRLK L++F +IL+ TDVA+R
Sbjct: 392 KDKHELRIAKSHCVTLNKPTIVDYVTSLHSRLKQKQRLKRLEKFTTHKRAILICTDVASR 451
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL------------TLVLIESDEIP 1187
G+D+P I+ V+H+ VP+++ I++HRSGRTAR + G+ ++ + +++
Sbjct: 452 GIDLPDIDTVVHFQVPKSNSIFVHRSGRTARLQSHGIFVCYLHKMHSGVSICICSCNDMD 511
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKR----IDLAKSIEYLESKI-KKNRPDNWLH 1242
+ K+F ++K ++ + P+ + V + +R + LA IE E K K+ + D+W
Sbjct: 512 AWKKLFADIKKDINHVE-PLLDCVPPKLYQRYKTLLTLANDIEQEEHKFSKETKIDSWFE 570
Query: 1243 RSGRTA 1248
++ R A
Sbjct: 571 KAAREA 576
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 48/229 (20%)
Query: 143 NEDMFVQMAEWVKFN-----IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 197
+E++ ++WV+ IP ++R L + +PT IQ + + +L+ DIV ++E
Sbjct: 78 DEEILRDTSDWVQLAEPDHPIPIAVLRNLCKNDMVSPTDIQRLTLKPSLVENNDIVISSE 137
Query: 198 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTR 257
TGSGKTLAF +PI+ + L +E+V+E
Sbjct: 138 TGSGKTLAFVLPIVLSL----------------LSNRSEDVIE----------------- 164
Query: 258 NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 317
+L+L PTRELAIQV+N + + T ++V ++GG+S +KQ R+L K P I+VATP
Sbjct: 165 ----SLVLLPTRELAIQVKNIFISIVENTILRVVPIIGGISVQKQTRLLKKNPAIVVATP 220
Query: 318 GRLWEFIQLGHFHLTE--LYKINYLVIDETDRMIESGHFPELKNILDRV 364
GR+ EFI+ TE +++ +LV+DE DR +E F EL+ I+ V
Sbjct: 221 GRIAEFIE----EETEKKPFELKFLVLDEADRFVEDNSFRELQKIVSHV 265
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 23/127 (18%)
Query: 545 GRTLVFCNSISSVKRLTQLLTML-------------KCSPL----------PLHASMNQR 581
R L+F N+IS V RL LL+++ C L LH+ + Q+
Sbjct: 367 SRCLIFVNTISYVYRLEALLSLILWKDKHELRIAKSHCVTLNKPTIVDYVTSLHSRLKQK 426
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
QRLK L++F +IL+ TDVA+RG+D+P I+ V+H+ VP+++ I++HRSGRTAR +
Sbjct: 427 QRLKRLEKFTTHKRAILICTDVASRGIDLPDIDTVVHFQVPKSNSIFVHRSGRTARLQSH 486
Query: 642 GLTVVLI 648
G+ V +
Sbjct: 487 GIFVCYL 493
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 45/61 (73%)
Query: 1355 DALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
++L+L PTRELAIQV+N + + T ++V ++GG+S +KQ R+L K P I+VATPG +
Sbjct: 164 ESLVLLPTRELAIQVKNIFISIVENTILRVVPIIGGISVQKQTRLLKKNPAIVVATPGRI 223
Query: 1415 S 1415
+
Sbjct: 224 A 224
Score = 43.1 bits (100), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 18/111 (16%)
Query: 1240 WLHRSGRTARANNEGL------------TLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1287
++HRSGRTAR + G+ ++ + +++ + K+F ++K ++ + P+
Sbjct: 473 FVHRSGRTARLQSHGIFVCYLHKMHSGVSICICSCNDMDAWKKLFADIKKDINHVE-PLL 531
Query: 1288 ESVLSLIKKR----IDLAKSIEYLESKI-KKNRPDNWLEKAAKDMDIIIDD 1333
+ V + +R + LA IE E K K+ + D+W EKAA++ DI + D
Sbjct: 532 DCVPPKLYQRYKTLLTLANDIEQEEHKFSKETKIDSWFEKAAREADIELSD 582
>gi|340505836|gb|EGR32122.1| hypothetical protein IMG5_095370 [Ichthyophthirius multifiliis]
Length = 540
Score = 210 bits (534), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 231/458 (50%), Gaps = 96/458 (20%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847
+ TPT IQ +P L +KDI+ AETGSGKTL+F +PIL +N+ P E
Sbjct: 143 YITPTPIQQKSLPHTL-KKKDIIALAETGSGKTLSFALPILQQFLNQ---PHE------- 191
Query: 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 907
YALIL+PTREL +Q+ + GK +KV
Sbjct: 192 -----------------------------YYALILSPTRELCVQISESFENLGKEFGLKV 222
Query: 908 ACVVGGMSTEKQLRILNKCPHI----------------LVATPGRLWEFIQLGHFHLTEL 951
+VGG+ KQ+ L+K PHI +V TPGR+ HF T+
Sbjct: 223 VVIVGGLDPIKQMIALSKNPHISIYYNIIYIYIYLYILVVGTPGRIQY-----HFQNTKG 277
Query: 952 YKIN---YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+++N +LV+DE D+++ E+ +ILD++ + R TF+FSAT+T+ +
Sbjct: 278 FQMNNLKFLVLDEADKLLNMDFEAEINDILDKI-----PKERNTFLFSATMTNKV----- 327
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
K +KVS +++P ++++ K +TL + KDSY
Sbjct: 328 -----HKLQKVS--------------LRNPVKIEVSTKYQTVQTLIQQYCFIPIKYKDSY 368
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + ++ G + ++F + + RLT +L L + +H MNQ +R +++F+D
Sbjct: 369 LAFILNENQGSSCIIFVTTCINSIRLTLMLRNLGFQAVSIHGQMNQTKRQTAINKFKDGQ 428
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVA+RGLDIP I+ VI+Y +P ++ YIHR GRTARA +G + LI ++
Sbjct: 429 KKILVATDVASRGLDIPCIDLVINYELPANTKEYIHRVGRTARAGRKGNAISLISQYDLE 488
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
++K+ + L K+D + I+E + +RI+ A+ I
Sbjct: 489 AFLKIEDLLGIKID--QYNIEEYKALVFNERINEAQKI 524
Score = 171 bits (432), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 142/497 (28%), Positives = 213/497 (42%), Gaps = 176/497 (35%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230
+ TPT IQ +P L +KDI+ AETGSGKTL+F +PIL +N+ P E
Sbjct: 143 YITPTPIQQKSLPHTL-KKKDIIALAETGSGKTLSFALPILQQFLNQ---PHE------- 191
Query: 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV 290
YALIL+PTREL +Q+ + GK +KV
Sbjct: 192 -----------------------------YYALILSPTRELCVQISESFENLGKEFGLKV 222
Query: 291 ACVVGGMSTEKQLRILNKCPHI----------------LVATPGRLWEFIQLGHFHLTEL 334
+VGG+ KQ+ L+K PHI +V TPGR+ HF T+
Sbjct: 223 VVIVGGLDPIKQMIALSKNPHISIYYNIIYIYIYLYILVVGTPGRIQY-----HFQNTKG 277
Query: 335 YKIN---YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+++N +LV+DE D+++ E+ +ILD++ P++
Sbjct: 278 FQMNNLKFLVLDEADKLLNMDFEAEINDILDKI-------PKE----------------- 313
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R TF+FSAT+T+ + K +KVS +++P
Sbjct: 314 ---------RNTFLFSATMTNKV----------HKLQKVS--------------LRNPVK 340
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
++++ K +TL + KDSYL + + ++ G S I+ +T
Sbjct: 341 IEVSTKYQTVQTLIQQYCFIPIKYKDSYLAFILNENQG--------------SSCIIFVT 386
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
I NSI RLT +L L
Sbjct: 387 TCI-------------------------------------NSI----RLTLMLRNLGFQA 405
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+ +H MNQ +R +++F+D IL+ATDVA+RGLDIP I+ VI+Y +P ++ YIHR
Sbjct: 406 VSIHGQMNQTKRQTAINKFKDGQKKILVATDVASRGLDIPCIDLVINYELPANTKEYIHR 465
Query: 632 SGRTARANNEGLTVVLI 648
GRTARA +G + LI
Sbjct: 466 VGRTARAGRKGNAISLI 482
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 1349 NLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI-- 1406
N + + ALIL+PTREL +Q+ + GK +KV +VGG+ KQ+ L+K PHI
Sbjct: 187 NQPHEYYALILSPTRELCVQISESFENLGKEFGLKVVVIVGGLDPIKQMIALSKNPHISI 246
Query: 1407 --------------LVATPGAL 1414
+V TPG +
Sbjct: 247 YYNIIYIYIYLYILVVGTPGRI 268
>gi|422293255|gb|EKU20555.1| dead deah box rna, partial [Nannochloropsis gaditana CCMP526]
Length = 414
Score = 209 bits (533), Expect = 8e-51, Method: Composition-based stats.
Identities = 151/485 (31%), Positives = 238/485 (49%), Gaps = 79/485 (16%)
Query: 736 KQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQ 795
K+ K+K T+ + L+ D + + VQ E + + + A G+ PT IQ
Sbjct: 7 KKDGKEKNTHPDVD---LDSDPAKGVEDDVQTFE--ALGVVKPLCEACAAIGWTKPTGIQ 61
Query: 796 SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 855
+P+AL R D++G AETGSGKT AF +P+L ++ K +
Sbjct: 62 QQAIPAALQGR-DVIGLAETGSGKTGAFALPVLQALLAKPQ------------------- 101
Query: 856 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS 915
+L+A++LAPTRELA Q+ G +K CVVGG+
Sbjct: 102 --------------------RLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVD 141
Query: 916 TEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPEL 974
Q L + PH++VATPGRL + ++ FH+ E +LV+DE DRM+ E+
Sbjct: 142 MMTQAIALARKPHVVVATPGRLVDHLENTKGFHIRE---ARFLVLDEADRMLSMDFEEEI 198
Query: 975 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 1034
IL + T + R+T +FSAT+T SK K+ + +
Sbjct: 199 NKIL---AIMPTGKHRRTLLFSATMT-------------SKVAKLQRA-----------S 231
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRL 1093
+ P V+ ++K +TL + + KD YL Y + + G+T LVF + ++ +RL
Sbjct: 232 LTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRL 291
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
LL L + LH M Q +RL L +F+ SIL+ATDVA+RGLDIP ++ VI++
Sbjct: 292 ALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFD 351
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLS 1213
+P + YIHR GRTARA G ++ ++ ++ +Y ++ L K LP++ DE +
Sbjct: 352 IPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTK--LPEYKTDEETVL 409
Query: 1214 LIKKR 1218
++ +R
Sbjct: 410 ILLER 414
Score = 110 bits (275), Expect = 7e-21, Method: Composition-based stats.
Identities = 99/375 (26%), Positives = 156/375 (41%), Gaps = 104/375 (27%)
Query: 119 KQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQ 178
K+ K+K T+ + L+ D + + VQ E + + + A G+ PT IQ
Sbjct: 7 KKDGKEKNTHPDVD---LDSDPAKGVEDDVQTFE--ALGVVKPLCEACAAIGWTKPTGIQ 61
Query: 179 SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 238
+P+AL R D++G AETGSGKT AF +P+L ++ K +
Sbjct: 62 QQAIPAALQGR-DVIGLAETGSGKTGAFALPVLQALLAKPQ------------------- 101
Query: 239 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS 298
+L+A++LAPTRELA Q+ G +K CVVGG+
Sbjct: 102 --------------------RLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVD 141
Query: 299 TEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPEL 357
Q L + PH++VATPGRL + ++ FH+ E +LV+DE DRM+ E+
Sbjct: 142 MMTQAIALARKPHVVVATPGRLVDHLENTKGFHIRE---ARFLVLDEADRMLSMDFEEEI 198
Query: 358 KNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 417
IL + T + R+T +FSAT+T
Sbjct: 199 NKIL-------------------------------AIMPTGKHRRTLLFSATMT------ 221
Query: 418 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 477
SK K+ + ++ P V+ ++K +TL + + KD
Sbjct: 222 -------SKVAKLQRA-----------SLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKD 263
Query: 478 SYLYYFILQHPGRTL 492
YL Y + + G+T+
Sbjct: 264 CYLAYALNEAAGQTI 278
Score = 104 bits (260), Expect = 3e-19, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 97/176 (55%), Gaps = 7/176 (3%)
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKR 559
++ P V+ ++K +TL + + KD YL Y + + G+T LVF + ++ +R
Sbjct: 231 SLTDPVKVEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQR 290
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L LL L + LH M Q +RL L +F+ SIL+ATDVA+RGLDIP ++ VI++
Sbjct: 291 LALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINF 350
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF------NLQEEENNEE 669
+P + YIHR GRTARA G ++ ++ ++ + + L E + +EE
Sbjct: 351 DIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEE 406
Score = 57.8 bits (138), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A++LAPTRELA Q+ G +K CVVGG+ Q L + PH++VATPG L
Sbjct: 105 AVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRL- 163
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKAL 1474
+ ++ K E++ + + D L + D + I+ I P R L S +
Sbjct: 164 VDHLENTKGFHIREARFLVLDEADRML---SMDFEEEINKILAIMPTGKHRRTLLFSATM 220
Query: 1475 VSKRKELQ 1482
SK +LQ
Sbjct: 221 TSKVAKLQ 228
>gi|326432948|gb|EGD78518.1| hypothetical protein PTSG_12845 [Salpingoeca sp. ATCC 50818]
Length = 984
Score = 209 bits (533), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 108/253 (42%), Positives = 164/253 (64%), Gaps = 11/253 (4%)
Query: 990 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP-KIVDLT-EKI 1047
RQT++ SATL ++ + Q + ++ + ++ R+ L ++S K VDL ++
Sbjct: 648 RQTYILSATLLYTAQ--------QFRKRRKNPQQDAVSRIVKLCGLRSKYKQVDLVGRRV 699
Query: 1048 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL-P 1106
+T L+ES+ILC +EKD YLYYF+ +HPGRT+VF NSI +V R+ L +L + +
Sbjct: 700 EVTSKLSESRILCTTEEKDVYLYYFVHRHPGRTIVFVNSIDNVHRIVNLFRLLNATNVWG 759
Query: 1107 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166
LH+ M QR+RL NL+RFR +S+L+ATDVAARGLDIP ++HV+HY +PR ++ Y+HRSG
Sbjct: 760 LHSKMQQRKRLTNLERFRASPSSVLIATDVAARGLDIPDVDHVLHYQLPRETDKYVHRSG 819
Query: 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIE 1226
RTARA+ EGL++VL + P+Y + L + +LP F +D +L I+K + AK+I
Sbjct: 820 RTARADKEGLSVVLQGPQDTPIYKAIIQELNRAEELPRFEVDLHLLPGIRKLVSKAKTII 879
Query: 1227 YLESKIKKNRPDN 1239
LE + K + N
Sbjct: 880 KLERALNKPKSKN 892
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 140/219 (63%), Gaps = 6/219 (2%)
Query: 486 QHPGRTLCEEIQDLLNIKSP-KIVDLT-EKIGITKTLTESKILCKHDEKDSYLYYFILQH 543
++P + I L ++S K VDL ++ +T L+ES+ILC +EKD YLYYF+ +H
Sbjct: 669 KNPQQDAVSRIVKLCGLRSKYKQVDLVGRRVEVTSKLSESRILCTTEEKDVYLYYFVHRH 728
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPL-PLHASMNQRQRLKNLDRFRDQNNSILLATD 602
PGRT+VF NSI +V R+ L +L + + LH+ M QR+RL NL+RFR +S+L+ATD
Sbjct: 729 PGRTIVFVNSIDNVHRIVNLFRLLNATNVWGLHSKMQQRKRLTNLERFRASPSSVLIATD 788
Query: 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662
VAARGLDIP ++HV+HY +PR ++ Y+HRSGRTARA+ EGL+VVL + P+ K +Q
Sbjct: 789 VAARGLDIPDVDHVLHYQLPRETDKYVHRSGRTARADKEGLSVVLQGPQDTPI-YKAIIQ 847
Query: 663 EEENNEEEERAEADKEKTEDINVTVSSKKK--KLKRKQN 699
E EE R E D I VS K KL+R N
Sbjct: 848 ELNRAEELPRFEVDLHLLPGIRKLVSKAKTIIKLERALN 886
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 124/223 (55%), Gaps = 28/223 (12%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V M+ W+ F + +I+ L + F PT +Q + A+ +DIV AETGSGKTLAFG
Sbjct: 287 VDMSAWLPFGLHSSIMEGLQAQRFTKPTPVQEECLQPAIQGFRDIVACAETGSGKTLAFG 346
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
+P++ I+N + +L AL++ P
Sbjct: 347 LPVIQHIINL----------------------------RQQGDDGDDDALTRLKALVVCP 378
Query: 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
TRELAIQV++H++ K+ ++V +VGG+S +KQ R+L P I+V TPGRLW+ I G
Sbjct: 379 TRELAIQVRDHLVAIAKHCGIRVVAIVGGISVQKQRRLLAGRPEIIVGTPGRLWDLIAAG 438
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
+ +L ++ +LVIDE DRM+E GHF EL+NIL ++ M E +
Sbjct: 439 NDAFHDLRRLRFLVIDEADRMVEQGHFKELENILRKLPMAERT 481
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 124/223 (55%), Gaps = 28/223 (12%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V M+ W+ F + +I+ L + F PT +Q + A+ +DIV AETGSGKTLAFG
Sbjct: 287 VDMSAWLPFGLHSSIMEGLQAQRFTKPTPVQEECLQPAIQGFRDIVACAETGSGKTLAFG 346
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
+P++ I+N + +L AL++ P
Sbjct: 347 LPVIQHIINL----------------------------RQQGDDGDDDALTRLKALVVCP 378
Query: 885 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
TRELAIQV++H++ K+ ++V +VGG+S +KQ R+L P I+V TPGRLW+ I G
Sbjct: 379 TRELAIQVRDHLVAIAKHCGIRVVAIVGGISVQKQRRLLAGRPEIIVGTPGRLWDLIAAG 438
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
+ +L ++ +LVIDE DRM+E GHF EL+NIL ++ M E +
Sbjct: 439 NDAFHDLRRLRFLVIDEADRMVEQGHFKELENILRKLPMAERT 481
Score = 70.1 bits (170), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
D ++HRSGRTARA+ EGL++VL + P+Y + L + +LP F +D +L I+K
Sbjct: 812 DKYVHRSGRTARADKEGLSVVLQGPQDTPIYKAIIQELNRAEELPRFEVDLHLLPGIRKL 871
Query: 1298 IDLAKSIEYLESKIKKNRPDNW-LEKAAKDMDIIIDDENLI 1337
+ AK+I LE + K + N + KAA++ D+ +DD L+
Sbjct: 872 VSKAKTIIKLERALNKPKSKNASVLKAAREADLEVDDSLLM 912
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++ PTRELAIQV++H++ K+ ++V +VGG+S +KQ R+L P I+V TPG L
Sbjct: 373 ALVVCPTRELAIQVRDHLVAIAKHCGIRVVAIVGGISVQKQRRLLAGRPEIIVGTPGRL 431
>gi|357627854|gb|EHJ77400.1| hypothetical protein KGM_01171 [Danaus plexippus]
Length = 473
Score = 209 bits (533), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 156/487 (32%), Positives = 248/487 (50%), Gaps = 80/487 (16%)
Query: 747 SANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR 806
S ++ +E+ ++ ED + + + + + A + +K P+KIQ +P AL
Sbjct: 20 SDEEQQVEIRENHEEDT----GTFQELGVVDVLCEACAELKWKHPSKIQKEAIPVALQG- 74
Query: 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866
KDI+G AETGSGKT AF +PIL + LENP
Sbjct: 75 KDIIGLAETGSGKTGAFALPILQAL---LENP---------------------------- 103
Query: 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926
+ +ALIL PTRELA Q+ G VK A +VGGM Q IL+K
Sbjct: 104 --------QRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALILSKK 155
Query: 927 PHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
PHI++ATPGRL + ++ F+L L YLV+DE DR++ E+ IL RV E
Sbjct: 156 PHIIIATPGRLVDHLENTKGFNLKAL---KYLVMDEADRILNMDFEVEVDKIL-RVIPRE 211
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 1045
R+T++FSAT+T KKV K ++R +++ P V+++
Sbjct: 212 ----RRTYLFSATMT----------------KKVQK----LQRA----SLQDPVKVEVST 243
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSP 1104
K + L + I KD YL + + + G + +VF ++ + R+ LL L
Sbjct: 244 KYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSFIVFVSTCAGALRVALLLRALGVGA 303
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
+PLH M+Q++RL L++F+ + S+L+ TDVA+RGLDIP ++ V++ +P S+ YIHR
Sbjct: 304 VPLHGQMSQQKRLAALNKFKSKARSVLICTDVASRGLDIPHVDVVVNLDIPLHSKDYIHR 363
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
GRTARA G + + ++ LY ++ + K+ LP + DE+ + ++++R+ A+
Sbjct: 364 VGRTARAGRAGKAITFVSQYDVELYQRIEQLIGKQ--LPLYKTDENEVMVLQERVAEAQR 421
Query: 1225 IEYLESK 1231
+ +E K
Sbjct: 422 LTKIEMK 428
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 128/283 (45%), Gaps = 81/283 (28%)
Query: 130 SANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR 189
S ++ +E+ ++ ED + + + + + A + +K P+KIQ +P AL
Sbjct: 20 SDEEQQVEIRENHEEDT----GTFQELGVVDVLCEACAELKWKHPSKIQKEAIPVALQG- 74
Query: 190 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249
KDI+G AETGSGKT AF +PIL + LENP
Sbjct: 75 KDIIGLAETGSGKTGAFALPILQAL---LENP---------------------------- 103
Query: 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309
+ +ALIL PTRELA Q+ G VK A +VGGM Q IL+K
Sbjct: 104 --------QRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALILSKK 155
Query: 310 PHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
PHI++ATPGRL + ++ F+L L YLV+DE DR++ E+ IL RV
Sbjct: 156 PHIIIATPGRLVDHLENTKGFNLKAL---KYLVMDEADRILNMDFEVEVDKIL-RVI--- 208
Query: 369 TSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
PR+ R+T++FSAT+T
Sbjct: 209 ---PRE--------------------------RRTYLFSATMT 222
Score = 96.7 bits (239), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 103/184 (55%), Gaps = 10/184 (5%)
Query: 475 EKDSYLYYFILQHPGRTLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 532
E+ +YL+ T+ +++Q L +++ P V+++ K + L + I K
Sbjct: 211 ERRTYLF-------SATMTKKVQKLQRASLQDPVKVEVSTKYQTVEKLQQYYIFIPVKFK 263
Query: 533 DSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 591
D YL + + + G + +VF ++ + R+ LL L +PLH M+Q++RL L++F+
Sbjct: 264 DVYLVHILNELAGNSFIVFVSTCAGALRVALLLRALGVGAVPLHGQMSQQKRLAALNKFK 323
Query: 592 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651
+ S+L+ TDVA+RGLDIP ++ V++ +P S+ YIHR GRTARA G + +
Sbjct: 324 SKARSVLICTDVASRGLDIPHVDVVVNLDIPLHSKDYIHRVGRTARAGRAGKAITFVSQY 383
Query: 652 EIPL 655
++ L
Sbjct: 384 DVEL 387
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ ALIL PTRELA Q+ G VK A +VGGM Q IL+K PHI++ATPG
Sbjct: 106 YFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALILSKKPHIIIATPGR 165
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
L + K +L K+++YL + D L +MD ++ + +++ R
Sbjct: 166 LVDHLENTKGFNL-KALKYLVM----DEADRIL-----NMDFEVEVDKILRVIPRERRTY 215
Query: 1469 LMSKALVSKRKELQ 1482
L S + K ++LQ
Sbjct: 216 LFSATMTKKVQKLQ 229
Score = 41.6 bits (96), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ LY ++ + K+ LP + DE+ + ++++R+
Sbjct: 359 DYIHRVGRTARAGRAGKAITFVSQYDVELYQRIEQLIGKQ--LPLYKTDENEVMVLQERV 416
Query: 1299 DLAKSIEYLESKIKKNRPDNWLEKAAKDMD 1328
A+ + +E K +++ + +K D D
Sbjct: 417 AEAQRLTKIEMKELEDKKGSRGKKRGADSD 446
>gi|158298749|ref|XP_318913.4| AGAP009808-PA [Anopheles gambiae str. PEST]
gi|157014035|gb|EAA14161.4| AGAP009808-PA [Anopheles gambiae str. PEST]
Length = 510
Score = 209 bits (532), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 140/463 (30%), Positives = 228/463 (49%), Gaps = 74/463 (15%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + +T+ A +K P+KIQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 58 WEDLGLIDTLCTACRGLKWKAPSKIQREAIPLALQG-KDIIGLAETGSGKTGAFALPILQ 116
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ L+NP + +A++L PTRELA
Sbjct: 117 AL---LDNP------------------------------------QRYFAVVLTPTRELA 137
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ G VK +VGGM Q L + PHI++ATPGRL + ++ +
Sbjct: 138 YQISEQFEALGATIGVKCCVIVGGMDLVTQAIQLARKPHIIIATPGRLVDHLE--NTKGF 195
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L I YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 196 SLKAIRYLVMDEADRILNMDFEEEVNKILKVM-----PRERRTFLFSATMT--------- 241
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
K KK+ + +++ P V+++ K + L + + K+ YL
Sbjct: 242 ----KKVKKLERA-----------SLRDPVKVEVSSKYQTVEKLLQYYLFIPARYKNVYL 286
Query: 1070 YYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ + + G + ++FC++ ++ R +L L + +PLH M Q +RL L++F+ Q
Sbjct: 287 VHVLNELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQAR 346
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL++TDVA+RGLDIP ++ V++ +P S+ YIHR GRTARA G + + ++ L
Sbjct: 347 QILISTDVASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVEL 406
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
Y ++ + L KK LP++ ++ + +++R+ A +E +
Sbjct: 407 YQRIEHLLGKK--LPEYKCEQDEVMALQERVAEAHRTARIEQR 447
Score = 107 bits (268), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 114/263 (43%), Gaps = 75/263 (28%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + +T+ A +K P+KIQ +P AL KDI+G AETGSGKT AF +PIL
Sbjct: 58 WEDLGLIDTLCTACRGLKWKAPSKIQREAIPLALQG-KDIIGLAETGSGKTGAFALPILQ 116
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ L+NP + +A++L PTRELA
Sbjct: 117 AL---LDNP------------------------------------QRYFAVVLTPTRELA 137
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ G VK +VGGM Q L + PHI++ATPGRL + ++ +
Sbjct: 138 YQISEQFEALGATIGVKCCVIVGGMDLVTQAIQLARKPHIIIATPGRLVDHLE--NTKGF 195
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L I YLV+DE DR++ E+ IL + PR+
Sbjct: 196 SLKAIRYLVMDEADRILNMDFEEEVNKILKVM-------PRE------------------ 230
Query: 393 TMTETSQPRQTFVFSATLTHSLK 415
R+TF+FSAT+T +K
Sbjct: 231 --------RRTFLFSATMTKKVK 245
Score = 102 bits (254), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKR 559
+++ P V+++ K + L + + K+ YL + + + G + ++FC++ ++ R
Sbjct: 251 SLRDPVKVEVSSKYQTVEKLLQYYLFIPARYKNVYLVHVLNELAGNSFMIFCSTCNNTVR 310
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
+L L + +PLH M Q +RL L++F+ Q IL++TDVA+RGLDIP ++ V++
Sbjct: 311 TALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQARQILISTDVASRGLDIPHVDVVLNL 370
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+P S+ YIHR GRTARA G + + ++ L
Sbjct: 371 DIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVEL 406
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A++L PTRELA Q+ G VK +VGGM Q L + PHI++ATPG
Sbjct: 125 YFAVVLTPTRELAYQISEQFEALGATIGVKCCVIVGGMDLVTQAIQLARKPHIIIATPGR 184
Query: 1414 L 1414
L
Sbjct: 185 L 185
Score = 40.8 bits (94), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G + + ++ LY ++ + L KK LP++ ++ + +++R+
Sbjct: 378 DYIHRVGRTARAGRAGQAITFVTQYDVELYQRIEHLLGKK--LPEYKCEQDEVMALQERV 435
Query: 1299 DLAKSIEYLESK-IKKNRPDNWLEKAAKDMD 1328
A +E + I++ + ++ A D D
Sbjct: 436 AEAHRTARIEQRDIEERKASKGGKRGANDSD 466
>gi|302690998|ref|XP_003035178.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
gi|300108874|gb|EFJ00276.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
Length = 449
Score = 209 bits (532), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 147/488 (30%), Positives = 236/488 (48%), Gaps = 88/488 (18%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + ++ AL + FK PT+IQ+ +P AL R DI+G A TGSGKT AF +PIL +
Sbjct: 19 LGLIDPLLEALDKMSFKAPTEIQAQALPHALEGR-DIIGVASTGSGKTAAFALPILQKL- 76
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
++P L+A +LAPTRELA Q+
Sbjct: 77 --WDDP------------------------------------KGLFACVLAPTRELAYQI 98
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 950
G V+ A +VGG Q L K PHI+VATPGRL + H T+
Sbjct: 99 SQQFEALGSAMGVRCAVIVGGTDIMAQKVALAKRPHIVVATPGRLDD-----HLEKTKGF 153
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L I +LV+DE DR+++ P + IL + + R T++FSAT+T
Sbjct: 154 NLRGIKFLVLDEADRLLDMDFGPVIDKILKVI-----PKERTTYLFSATMT--------- 199
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
+K K+ + ++ +P V++ K +L + +L EKD+ L
Sbjct: 200 ----TKVAKLQRA-----------SLSNPVRVEVNTKYQTVDSLLQYYLLMPLKEKDTLL 244
Query: 1070 YYF---ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
Y + Q+ ++F +++ RL+ +L L +PLH ++Q QRL L +F+
Sbjct: 245 VYLANTLAQN--SIIIFTRTVNDAARLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSG 302
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+L+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++
Sbjct: 303 GRKVLVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITFVTQYDV 362
Query: 1187 PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGR 1246
+++ + KK++L +P DE +SL+++R+ A + E + + H +
Sbjct: 363 EFIMRIEKVIGKKMEL--WPTDEEEVSLLRERVGEAARVAAAEMRDQAKAG----HGGKK 416
Query: 1247 TARANNEG 1254
R +EG
Sbjct: 417 RRRGGDEG 424
Score = 170 bits (430), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 135/496 (27%), Positives = 207/496 (41%), Gaps = 160/496 (32%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + ++ AL + FK PT+IQ+ +P AL R DI+G A TGSGKT AF +PIL +
Sbjct: 19 LGLIDPLLEALDKMSFKAPTEIQAQALPHALEGR-DIIGVASTGSGKTAAFALPILQKL- 76
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
++P L+A +LAPTRELA Q+
Sbjct: 77 --WDDP------------------------------------KGLFACVLAPTRELAYQI 98
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE-- 333
G V+ A +VGG Q L K PHI+VATPGRL + H T+
Sbjct: 99 SQQFEALGSAMGVRCAVIVGGTDIMAQKVALAKRPHIVVATPGRLDD-----HLEKTKGF 153
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L I +LV+DE DR+++ P + IL + P++
Sbjct: 154 NLRGIKFLVLDEADRLLDMDFGPVIDKILKVI-------PKE------------------ 188
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R T++FSAT+T +K K+ + ++ +P V
Sbjct: 189 --------RTTYLFSATMT-------------TKVAKLQRA-----------SLSNPVRV 216
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
++ K +L + +L EKD+ L Y
Sbjct: 217 EVNTKYQTVDSLLQYYLLMPLKEKDTLLVY------------------------------ 246
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
+ TL ++ I+ +F +++ RL+ +L L +
Sbjct: 247 ---LANTLAQNSII----------------------IFTRTVNDAARLSIILRTLGFPAV 281
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
PLH ++Q QRL L +F+ +L+ATDVA+RGLDIP ++ VI++ +P S+ YIHR
Sbjct: 282 PLHGQLSQSQRLGALSKFKSGGRKVLVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRV 341
Query: 633 GRTARANNEGLTVVLI 648
GRTARA G ++ +
Sbjct: 342 GRTARAGRAGKSITFV 357
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 1354 WD------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 1407
WD A +LAPTRELA Q+ G V+ A +VGG Q L K PHI+
Sbjct: 77 WDDPKGLFACVLAPTRELAYQISQQFEALGSAMGVRCAVIVGGTDIMAQKVALAKRPHIV 136
Query: 1408 VATPGAL 1414
VATPG L
Sbjct: 137 VATPGRL 143
Score = 42.7 bits (99), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ +++ + KK++L +P DE +SL+++R+
Sbjct: 336 DYIHRVGRTARAGRAGKSITFVTQYDVEFIMRIEKVIGKKMEL--WPTDEEEVSLLRERV 393
Query: 1299 DLAKSIEYLESK 1310
A + E +
Sbjct: 394 GEAARVAAAEMR 405
>gi|389748758|gb|EIM89935.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 452
Score = 209 bits (532), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 142/463 (30%), Positives = 231/463 (49%), Gaps = 88/463 (19%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+ ++ A+ Q G+KTPT IQ+ +P AL R DI+G A TGSGKT AF +PI+ + N
Sbjct: 24 DPLLEAVEQLGYKTPTDIQAEALPHALEGR-DIIGVASTGSGKTAAFALPIIQALWN--- 79
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
+P L+A ++APTRELA Q+
Sbjct: 80 DP------------------------------------KGLFACVIAPTRELAYQISQQF 103
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL-----TEL 951
G V+ A ++GGM Q L K PHI+VATPGRL ++HL L
Sbjct: 104 EALGSGIGVRCAVIIGGMDVVSQSIALAKKPHIIVATPGRL-------NYHLENTKGFSL 156
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+ + V+DE DR+++ P++ IL + + R T++FSAT+T
Sbjct: 157 RGLKFFVLDEADRLLDMDFGPDIDKILKVI-----PKERTTYLFSATMT----------- 200
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
+K K+ + ++++P V+++ K TL + + K+ +L
Sbjct: 201 --TKVAKLQRA-----------SLQNPVRVEVSSKYSTVSTLLQYYLFMPLSHKEVHLVN 247
Query: 1072 F---ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ Q+ ++F ++ ++L+ +L L +PLH ++Q QRL L +F+
Sbjct: 248 LANTLAQN--SMMIFTRTVHDAQKLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSGGR 305
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
SIL+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ L+ +I L
Sbjct: 306 SILVATDVASRGLDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDIEL 365
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
++ KK+DL +P D+ ++L+++R++ A + E K
Sbjct: 366 IHRIEKVTGKKMDL--WPTDKDEIALLRERVEEASRLAVNEMK 406
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 99/207 (47%), Gaps = 52/207 (25%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+ ++ A+ Q G+KTPT IQ+ +P AL R DI+G A TGSGKT AF +PI+ + N
Sbjct: 24 DPLLEAVEQLGYKTPTDIQAEALPHALEGR-DIIGVASTGSGKTAAFALPIIQALWN--- 79
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
+P L+A ++APTRELA Q+
Sbjct: 80 DP------------------------------------KGLFACVIAPTRELAYQISQQF 103
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL-----TEL 334
G V+ A ++GGM Q L K PHI+VATPGRL ++HL L
Sbjct: 104 EALGSGIGVRCAVIIGGMDVVSQSIALAKKPHIIVATPGRL-------NYHLENTKGFSL 156
Query: 335 YKINYLVIDETDRMIESGHFPELKNIL 361
+ + V+DE DR+++ P++ IL
Sbjct: 157 RGLKFFVLDEADRLLDMDFGPDIDKIL 183
Score = 100 bits (249), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 475 EKDSYLYYFILQHPGRTLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 532
E+ +YL+ T+ ++ L ++++P V+++ K TL + + K
Sbjct: 189 ERTTYLF-------SATMTTKVAKLQRASLQNPVRVEVSSKYSTVSTLLQYYLFMPLSHK 241
Query: 533 DSYLYYF---ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 589
+ +L + Q+ ++F ++ ++L+ +L L +PLH ++Q QRL L +
Sbjct: 242 EVHLVNLANTLAQN--SMMIFTRTVHDAQKLSIILRTLGFPAVPLHGQLSQSQRLGALSK 299
Query: 590 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIE 649
F+ SIL+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ L+
Sbjct: 300 FKSGGRSILVATDVASRGLDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVT 359
Query: 650 SDEIPL 655
+I L
Sbjct: 360 QYDIEL 365
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A ++APTRELA Q+ G V+ A ++GGM Q L K PHI+VATPG L
Sbjct: 86 ACVIAPTRELAYQISQQFEALGSGIGVRCAVIIGGMDVVSQSIALAKKPHIIVATPGRL 144
Score = 41.6 bits (96), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ +I L ++ KK+DL +P D+ ++L+++R+
Sbjct: 337 DYIHRVGRTARAGRAGKSITLVTQYDIELIHRIEKVTGKKMDL--WPTDKDEIALLRERV 394
Query: 1299 DLAKSIEYLESK 1310
+ A + E K
Sbjct: 395 EEASRLAVNEMK 406
>gi|450030943|ref|ZP_21833495.1| ATP-dependent RNA helicase [Streptococcus mutans G123]
gi|449192085|gb|EMB93521.1| ATP-dependent RNA helicase [Streptococcus mutans G123]
Length = 517
Score = 209 bits (532), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/435 (32%), Positives = 219/435 (50%), Gaps = 80/435 (18%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIK------ 135
Query: 949 TELYKINY---LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+ K+NY L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 136 RKALKLNYVETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA--- 187
Query: 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 1065
IKR+ + +K P+ V + K T + + I K +EK
Sbjct: 188 --------------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEK 226
Query: 1066 -DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
D+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F+
Sbjct: 227 FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFK 286
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+ N IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +
Sbjct: 287 NDNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPN 346
Query: 1185 EIPLYIKMFNSLEKK 1199
E+ Y+++ L KK
Sbjct: 347 EMG-YLQIIEKLTKK 360
Score = 124 bits (310), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 131/266 (49%), Gaps = 57/266 (21%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIK------ 135
Query: 332 TELYKINY---LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
+ K+NY L++DE D M+ G +++ I+ RV T RQT++ S P +
Sbjct: 136 RKALKLNYVETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DA 187
Query: 389 LDRVTMTETSQPRQTFVFSATLTHSL 414
+ R+ + +P + + LT L
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 66.6 bits (161), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + Y+E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNYVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 442
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 145/435 (33%), Positives = 215/435 (49%), Gaps = 70/435 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + ++ A G+K PTKIQ +P AL KD++G A+TGSGKT AF +PIL ++
Sbjct: 14 LGVCDQLVTACDNLGWKNPTKIQIESIPHALEG-KDLIGLAQTGSGKTGAFALPILQSLL 72
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
EA E K+ +A +L+PTRELAIQ+
Sbjct: 73 ------------------EASE-----------------KSVQAFFACVLSPTRELAIQI 97
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G VK A +VGG+ +Q L K PHI+VATPGRL + L + L
Sbjct: 98 AEQFEALGSDIGVKCAVLVGGVDMVQQSIALGKRPHIVVATPGRLVD--HLSNTKGFSLR 155
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ YLV+DE DR++ L IL + + R+TF+FSAT+T
Sbjct: 156 TLKYLVLDEADRLLNEDFEKSLDEILKVI-----PRERRTFLFSATMT------------ 198
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
KKV K+LQ +++P ++ K TL + KD YL Y
Sbjct: 199 ----KKV-------KKLQRAC-LRNPVKIEAASKYSTVDTLKQEYRFIPAKYKDCYLVYI 246
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G T +VF + + L +L L +P++ M Q +RL L++F+ +IL
Sbjct: 247 LTEKSGSTSMVFTRTCDATTFLALVLRNLGLRAIPINGHMTQSKRLGALNKFKAGECNIL 306
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+ E+ +I+
Sbjct: 307 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEVEWFIQ 366
Query: 1192 MFNSLEKKVDLPDFP 1206
+ + KK LP++P
Sbjct: 367 IEKLIGKK--LPEYP 379
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 145/498 (29%), Positives = 208/498 (41%), Gaps = 150/498 (30%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + ++ A G+K PTKIQ +P AL KD++G A+TGSGKT AF +PIL ++
Sbjct: 14 LGVCDQLVTACDNLGWKNPTKIQIESIPHALEG-KDLIGLAQTGSGKTGAFALPILQSLL 72
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
EA E K+ +A +L+PTRELAIQ+
Sbjct: 73 ------------------EASE-----------------KSVQAFFACVLSPTRELAIQI 97
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G VK A +VGG+ +Q L K PHI+VATPGRL + L + L
Sbjct: 98 AEQFEALGSDIGVKCAVLVGGVDMVQQSIALGKRPHIVVATPGRLVD--HLSNTKGFSLR 155
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR++ L IL + PR+
Sbjct: 156 TLKYLVLDEADRLLNEDFEKSLDEILKVI-------PRE--------------------- 187
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+TF+FSAT+T KKV K+LQ +++P ++
Sbjct: 188 -----RRTFLFSATMT----------------KKV-------KKLQRAC-LRNPVKIEAA 218
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K TL + KD YL Y LTEK G
Sbjct: 219 SKYSTVDTLKQEYRFIPAKYKDCYLVYI--------------------------LTEKSG 252
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
T ++VF + + L +L L +P++
Sbjct: 253 ST-----------------------------SMVFTRTCDATTFLALVLRNLGLRAIPIN 283
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M Q +RL L++F+ +IL+ TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRT
Sbjct: 284 GHMTQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRT 343
Query: 636 ARANNEGLTVVLIESDEI 653
ARA G+ + L+ E+
Sbjct: 344 ARAGRSGVAISLVNQYEV 361
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ A +L+PTRELAIQ+ G VK A +VGG+ +Q L K PHI+VATPG
Sbjct: 81 AFFACVLSPTRELAIQIAEQFEALGSDIGVKCAVLVGGVDMVQQSIALGKRPHIVVATPG 140
Query: 1413 AL 1414
L
Sbjct: 141 RL 142
>gi|425769747|gb|EKV08230.1| ATP-dependent RNA helicase , putative [Penicillium digitatum Pd1]
gi|425771396|gb|EKV09840.1| ATP-dependent RNA helicase , putative [Penicillium digitatum PHI26]
Length = 494
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 152/493 (30%), Positives = 243/493 (49%), Gaps = 83/493 (16%)
Query: 727 SDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQK 786
S +P +K + + T + VD +++E + + + +++ A +
Sbjct: 31 SPQPTAKDADVEDGASDSNTQPTADDPNVDGASSETEPSAPKTFKELGLIDSLCEACDKM 90
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G+K PT IQS +P AL R DI+G AETGSGKT +F +PIL + +E P
Sbjct: 91 GYKAPTPIQSESIPLALQGR-DIIGLAETGSGKTASFVLPILQAL---MEKP-------- 138
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
+ L++APTRELA Q+ G V+
Sbjct: 139 ----------------------------QPFFGLVMAPTRELAYQISLACESLGATINVR 170
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETD 963
+VGGM Q L K PHI+VATPGRL L H T+ L + +LV+DE D
Sbjct: 171 STTLVGGMDMVPQSIALGKKPHIIVATPGRL-----LDHLENTKGFSLRNLKFLVMDEAD 225
Query: 964 RMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD 1023
R+++ P L IL +V E R+TF+FSATL+ ++
Sbjct: 226 RLLDMDFGPILDKIL-KVLPRE----RRTFLFSATLSSKVE------------------- 261
Query: 1024 PSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-L 1081
S++R ++ +P V ++ K +TL ++ IL + KD YL Y + + G++ +
Sbjct: 262 -SLQRA----SLSNPARVSISSSKYATVETLQQTYILRPYKHKDIYLVYLLHEFIGQSVI 316
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
+F ++ +R+ LL L +PLH M+Q RL L +FR ++ IL+ATDVAARGL
Sbjct: 317 IFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREILVATDVAARGL 376
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
DIP ++ V+++ +P S+ YIHR GRTARA G + + ++ ++ ++ ++ K +
Sbjct: 377 DIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVEIWQRIEAAMGK--E 434
Query: 1202 LPDFPI--DESVL 1212
L +FP DE+++
Sbjct: 435 LAEFPAPKDEAMV 447
Score = 173 bits (439), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 148/543 (27%), Positives = 228/543 (41%), Gaps = 161/543 (29%)
Query: 110 SDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQK 169
S +P++K + + T + VD +++E + + + +++ A +
Sbjct: 31 SPQPTAKDADVEDGASDSNTQPTADDPNVDGASSETEPSAPKTFKELGLIDSLCEACDKM 90
Query: 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229
G+K PT IQS +P AL R DI+G AETGSGKT +F +PIL + +E P
Sbjct: 91 GYKAPTPIQSESIPLALQGR-DIIGLAETGSGKTASFVLPILQAL---MEKP-------- 138
Query: 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 289
+ L++APTRELA Q+ G V+
Sbjct: 139 ----------------------------QPFFGLVMAPTRELAYQISLACESLGATINVR 170
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETD 346
+VGGM Q L K PHI+VATPGRL L H T+ L + +LV+DE D
Sbjct: 171 STTLVGGMDMVPQSIALGKKPHIIVATPGRL-----LDHLENTKGFSLRNLKFLVMDEAD 225
Query: 347 RMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406
R+++ P L IL + PR+ R+TF+F
Sbjct: 226 RLLDMDFGPILDKILKVL-------PRE--------------------------RRTFLF 252
Query: 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL-TEKIGITKTLT 465
SATL+ ++ S++R ++ +P V + + K +TL
Sbjct: 253 SATLSSKVE--------------------SLQR----ASLSNPARVSISSSKYATVETLQ 288
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI 525
++ IL + KD YL Y + + G+++ I +T+ E++
Sbjct: 289 QTYILRPYKHKDIYLVYLLHEFIGQSV---------------------IIFMRTVHETQ- 326
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
R+ LL L +PLH M+Q RL
Sbjct: 327 ---------------------------------RVAFLLRGLGFGAIPLHGQMSQSARLG 353
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P S+ YIHR GRTARA G +
Sbjct: 354 ALGKFRSKSREILVATDVAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAI 413
Query: 646 VLI 648
+
Sbjct: 414 SFV 416
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
L++APTRELA Q+ G V+ +VGGM Q L K PHI+VATPG L
Sbjct: 143 GLVMAPTRELAYQISLACESLGATINVRSTTLVGGMDMVPQSIALGKKPHIIVATPGRL- 201
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDI--IIDDENLIQPKANSRENALMSK 1472
L ++ K K + + D L DMD I+D + P+ R L S
Sbjct: 202 LDHLENTKGFSLRNLKFLVMDEADRLL-----DMDFGPILDKILKVLPR--ERRTFLFSA 254
Query: 1473 ALVSKRKELQ 1482
L SK + LQ
Sbjct: 255 TLSSKVESLQ 264
>gi|406860112|gb|EKD13172.1| ATP-dependent rRNA helicase RRP3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 497
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 148/496 (29%), Positives = 241/496 (48%), Gaps = 88/496 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I + + A G+K PT IQ+ +P AL R D++ AETGSGKT AF +PIL ++
Sbjct: 76 LGIVDELCDACTALGYKAPTPIQAESIPLALQDR-DLIALAETGSGKTAAFALPILQSLL 134
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K + + L+LAPTRELA Q+
Sbjct: 135 DKPQ---------------------------------------PFFGLVLAPTRELAYQI 155
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G V+ A +VGGM Q L K PHI+VA+PGRL + ++ + L
Sbjct: 156 SQSFEALGSKIGVRCAVIVGGMDMVPQAIALGKKPHIIVASPGRLLDHLE--NTKGFSLR 213
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ YLV+DE DR+++ + I+D++ + + R+T++FSAT++ ++
Sbjct: 214 ALKYLVMDEADRLLDL----DFGAIIDKI-LKVIPRERRTYLFSATMSSKVE-------- 260
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
S++R ++K P V ++ K TL ++ ++ KD YL Y
Sbjct: 261 ------------SLQRA----SLKDPLRVSVSTKYQTVSTLIQNCLIVPLVHKDVYLVYL 304
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G++ ++F +++ +RL LL L +PLH ++Q RL L++FR IL
Sbjct: 305 MNEFAGQSAIIFTRTVNETQRLAILLRSLGFGAIPLHGQLSQTARLGALNKFRAGTRKIL 364
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRTARA G ++ ++ ++ +
Sbjct: 365 VATDVAARGLDIPSVDIVLNYDLPPESKTYIHRVGRTARAGKSGHAFSIVTQYDVEIFTR 424
Query: 1192 MFNSLEKKVDLPDF-PIDESVLSLIKKRIDLAKSIEYLESK------------IKKNRPD 1238
+L K+ +P + P+ E V+ + K R++ A+ E K +K RP
Sbjct: 425 TEAAL--KIRMPVYEPVKEEVM-VFKARVEEAQRHARNEMKNLHEDRGNKGSILKGRRPK 481
Query: 1239 NWLHRSGRTARANNEG 1254
++ GR EG
Sbjct: 482 TGGNKRGRDDMDREEG 497
Score = 168 bits (425), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 136/503 (27%), Positives = 212/503 (42%), Gaps = 154/503 (30%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I + + A G+K PT IQ+ +P AL R D++ AETGSGKT AF +PIL ++
Sbjct: 76 LGIVDELCDACTALGYKAPTPIQAESIPLALQDR-DLIALAETGSGKTAAFALPILQSLL 134
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K + + L+LAPTRELA Q+
Sbjct: 135 DKPQ---------------------------------------PFFGLVLAPTRELAYQI 155
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G V+ A +VGGM Q L K PHI+VA+PGRL + ++ + L
Sbjct: 156 SQSFEALGSKIGVRCAVIVGGMDMVPQAIALGKKPHIIVASPGRLLDHLE--NTKGFSLR 213
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR+++ + I+D++ PR+
Sbjct: 214 ALKYLVMDEADRLLDL----DFGAIIDKILKV---IPRE--------------------- 245
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+T++FSAT++ ++ S++R ++K P V ++
Sbjct: 246 -----RRTYLFSATMSSKVE--------------------SLQR----ASLKDPLRVSVS 276
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K TL ++ ++ KD YL Y + + G++ I
Sbjct: 277 TKYQTVSTLIQNCLIVPLVHKDVYLVYLMNEFAGQS---------------------AII 315
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
T+T+ E+ +RL LL L +PLH
Sbjct: 316 FTRTVNET----------------------------------QRLAILLRSLGFGAIPLH 341
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
++Q RL L++FR IL+ATDVAARGLDIP ++ V++Y +P S+ YIHR GRT
Sbjct: 342 GQLSQTARLGALNKFRAGTRKILVATDVAARGLDIPSVDIVLNYDLPPESKTYIHRVGRT 401
Query: 636 ARANNEGLTVVLIESDEIPLKTK 658
ARA G ++ ++ + T+
Sbjct: 402 ARAGKSGHAFSIVTQYDVEIFTR 424
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VA+PG
Sbjct: 140 FFGLVLAPTRELAYQISQSFEALGSKIGVRCAVIVGGMDMVPQAIALGKKPHIIVASPGR 199
Query: 1414 LSLKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSK 1472
L L ++ K K + + D L+ D IID + P+ R L S
Sbjct: 200 L-LDHLENTKGFSLRALKYLVMDEADRLLD---LDFGAIIDKILKVIPR--ERRTYLFSA 253
Query: 1473 ALVSKRKELQ 1482
+ SK + LQ
Sbjct: 254 TMSSKVESLQ 263
>gi|449889270|ref|ZP_21787529.1| ATP-dependent RNA helicase [Streptococcus mutans SA41]
gi|450039476|ref|ZP_21836209.1| ATP-dependent RNA helicase [Streptococcus mutans T4]
gi|449200387|gb|EMC01417.1| ATP-dependent RNA helicase [Streptococcus mutans T4]
gi|449250267|gb|EMC48338.1| ATP-dependent RNA helicase [Streptococcus mutans SA41]
Length = 517
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSSIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 123 bits (309), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSSIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|255079166|ref|XP_002503163.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
gi|226518429|gb|ACO64421.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
Length = 450
Score = 208 bits (530), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 142/462 (30%), Positives = 231/462 (50%), Gaps = 84/462 (18%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
++ + E + A G+K P++IQ+ +P AL KD++G A+TGSGKT AF +PIL
Sbjct: 17 FLGIGVCEELAEAAADLGWKAPSEIQAQSIPQALQG-KDVIGLAQTGSGKTGAFALPILQ 75
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+++K + +AL+L+PTRELA
Sbjct: 76 ELLDKPQ---------------------------------------AFFALVLSPTRELA 96
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
IQ+ G VK A +VGG+ Q L K PH++V TPGR+ + HLT
Sbjct: 97 IQIAEQFEALGAGIGVKTAVLVGGIDMMAQSIQLGKRPHVVVGTPGRVVD-------HLT 149
Query: 950 E-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004
L ++ L +DE DR++ E+ IL V + R+T +FSAT+T
Sbjct: 150 NTKGFTLKQLQVLCLDEADRLLNLDFEQEIDQILKVV-----PRDRRTQLFSATMT---- 200
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
SK K+ + +++P V+++ K +L ++ +
Sbjct: 201 ---------SKVAKLQRA-----------CLRNPVKVEVSAKYSTVDSLKQNYLFIPAKH 240
Query: 1065 KDSYLYYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD Y+ Y + T+ VF + ++L + L +P+H M+Q +R+ L++F
Sbjct: 241 KDCYVNYLFNELSSSTMMVFTRTCDQTRKLALVARNLGFGAIPIHGQMSQPKRIGALNKF 300
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ +IL+ATDVA+RGLDIP ++ VI+Y VP+ S+ Y+HR GRTARA GL + ++
Sbjct: 301 KAGERNILVATDVASRGLDIPAVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAITMVTQ 360
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
++ LY K+ ++KK+D D P +E+VL L+ +R++ A+ I
Sbjct: 361 YDVELYQKIERLIQKKLDAYDAP-EEAVL-LMNERVNEAQRI 400
Score = 161 bits (407), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 134/512 (26%), Positives = 210/512 (41%), Gaps = 164/512 (32%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
++ + E + A G+K P++IQ+ +P AL KD++G A+TGSGKT AF +PIL
Sbjct: 17 FLGIGVCEELAEAAADLGWKAPSEIQAQSIPQALQG-KDVIGLAQTGSGKTGAFALPILQ 75
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+++K + +AL+L+PTRELA
Sbjct: 76 ELLDKPQ---------------------------------------AFFALVLSPTRELA 96
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
IQ+ G VK A +VGG+ Q L K PH++V TPGR+ + HLT
Sbjct: 97 IQIAEQFEALGAGIGVKTAVLVGGIDMMAQSIQLGKRPHVVVGTPGRVVD-------HLT 149
Query: 333 E-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
L ++ L +DE DR++ E+ IL V PR
Sbjct: 150 NTKGFTLKQLQVLCLDEADRLLNLDFEQEIDQILKVV-------PRD------------- 189
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+T +FSAT+T SK K+ + ++
Sbjct: 190 -------------RRTQLFSATMT-------------SKVAKLQRA-----------CLR 212
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
+P V+++ K +L ++ + KD Y+ Y L E+ + +
Sbjct: 213 NPVKVEVSAKYSTVDSLKQNYLFIPAKHKDCYVNY---------LFNELSSSTMMVFTRT 263
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
D T K+ + R L F
Sbjct: 264 CDQTRKLALV---------------------------ARNLGF----------------- 279
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+P+H M+Q +R+ L++F+ +IL+ATDVA+RGLDIP ++ VI+Y VP+ S+
Sbjct: 280 --GAIPIHGQMSQPKRIGALNKFKAGERNILVATDVASRGLDIPAVDVVINYDVPQNSKD 337
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659
Y+HR GRTARA GL + ++ ++ L K
Sbjct: 338 YVHRVGRTARAGRSGLAITMVTQYDVELYQKI 369
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ AL+L+PTRELAIQ+ G VK A +VGG+ Q L K PH++V TPG
Sbjct: 83 AFFALVLSPTRELAIQIAEQFEALGAGIGVKTAVLVGGIDMMAQSIQLGKRPHVVVGTPG 142
Score = 48.1 bits (113), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA GL + ++ ++ LY K+ ++KK+D D P +E+VL L+ +R+
Sbjct: 337 DYVHRVGRTARAGRSGLAITMVTQYDVELYQKIERLIQKKLDAYDAP-EEAVL-LMNERV 394
Query: 1299 DLAKSI 1304
+ A+ I
Sbjct: 395 NEAQRI 400
>gi|449910781|ref|ZP_21794880.1| ATP-dependent RNA helicase [Streptococcus mutans OMZ175]
gi|449259079|gb|EMC56625.1| ATP-dependent RNA helicase [Streptococcus mutans OMZ175]
Length = 517
Score = 208 bits (530), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 123 bits (309), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
Length = 530
Score = 208 bits (530), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 214/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL- 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
D+ D+ +RN + AL++APTRELA
Sbjct: 61 ------------DKIDT--------------------------SRNLVQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLE 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ ++K
Sbjct: 143 H---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPEAIKRI--- 191
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
+K +Q+ P+ V + K T + + I K +K D+
Sbjct: 192 ---------------GVKFMQN------PEHVKVAAKELTTDLVDQYYIRVKEQDKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA +G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKQGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + L KK
Sbjct: 350 YLSIIEKLTKK 360
Score = 126 bits (317), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 127/262 (48%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL- 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
D+ D+ +RN + AL++APTRELA
Sbjct: 61 ------------DKIDT--------------------------SRNLVQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLE 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ L++DE D M+ G +++ I+ RV T RQT++ S PE + R+
Sbjct: 143 H---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPE---AIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P V + LT L
Sbjct: 192 GVKFMQNPEHVKVAAKELTTDL 213
Score = 94.4 bits (233), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 72/125 (57%)
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
D+ D+ + P ++VF + V LT+ L + +H ++Q +RL+ L
Sbjct: 224 QDKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLR 283
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
F++ N IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA +G ++ +
Sbjct: 284 DFKNDNIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKQGQSITFV 343
Query: 649 ESDEI 653
+E+
Sbjct: 344 APNEM 348
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 17/132 (12%)
Query: 1347 SRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 1406
SRNL AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI
Sbjct: 66 SRNL---VQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHI 122
Query: 1407 LVATPGALSLKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKA 1462
+V TPG L +DL K +E++E+ I + D L +M + D E +I
Sbjct: 123 VVGTPGRL----LDLIKRKALKLEHVETLI-LDEADEML-----NMGFLEDIEAIISRVP 172
Query: 1463 NSRENALMSKAL 1474
+R+ L S +
Sbjct: 173 ETRQTLLFSATM 184
>gi|450112586|ref|ZP_21863225.1| ATP-dependent RNA helicase [Streptococcus mutans SM6]
gi|449221937|gb|EMC21684.1| ATP-dependent RNA helicase [Streptococcus mutans SM6]
Length = 517
Score = 208 bits (530), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGRSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 123 bits (308), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGRSITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|450037665|ref|ZP_21835841.1| ATP-dependent RNA helicase [Streptococcus mutans M21]
gi|449192015|gb|EMB93458.1| ATP-dependent RNA helicase [Streptococcus mutans M21]
Length = 517
Score = 208 bits (530), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGRSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 123 bits (308), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGRSITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|388578792|gb|EIM19128.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 438
Score = 208 bits (530), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/481 (30%), Positives = 242/481 (50%), Gaps = 89/481 (18%)
Query: 767 MAE--WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
MAE + N+ + +++ + G+K PT+IQ +P +L +R DI+G A+TGSGKT AF
Sbjct: 1 MAEVSFKDLNLIDDLVKNCERLGYKQPTEIQQQSIPYSLQSR-DIIGLAQTGSGKTAAFA 59
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
+P++ + +NP + +LAP
Sbjct: 60 LPVIQLL---YDNPAP------------------------------------YFCCVLAP 80
Query: 885 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
TRELA Q+ G ++ A +VGGM Q L+K PHI+VATPGRL
Sbjct: 81 TRELAYQISEQFEALGSNIGLRTATIVGGMDMMTQSIALSKKPHIIVATPGRL------- 133
Query: 945 HFHL-----TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
H HL L I +LV+DE DR+++ P I+D++ + + R T +FSAT+
Sbjct: 134 HDHLENTKGFSLRNIKFLVMDEADRLLDMDFGP----IIDKL-LKILPKERTTMLFSATM 188
Query: 1000 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 1059
T +K K+ + ++ +P V++++K TL + +
Sbjct: 189 T-------------TKVAKLQRA-----------SLSNPVKVEVSDKYQTVSTLLQHYLF 224
Query: 1060 CKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
KDSYL Y + G +++ F ++ +R++ +L L +PLH ++Q RL
Sbjct: 225 FPFKMKDSYLVYLANEVAGHSMIIFTRTVVDAQRISIILRNLGFPAIPLHGQLSQSSRLG 284
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
L++F+ +IL+ATDVA+RGLDIP +++V++Y P S+ YIHR GRTARA G +
Sbjct: 285 ALNKFKAGGRNILVATDVASRGLDIPSVDYVVNYDTPSNSKDYIHRVGRTARAGRSGKAI 344
Query: 1179 VLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK---SIEYLESKIKKN 1235
L+ ++ L ++ ++ K++ +FP D+ + L+ +R++ A ++E ES+ KK
Sbjct: 345 TLVTQYDVELLQRIEKAINVKME--EFPHDKQAVPLLVERVNEASRIAAVELRESQQKKR 402
Query: 1236 R 1236
+
Sbjct: 403 K 403
Score = 166 bits (421), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 138/513 (26%), Positives = 217/513 (42%), Gaps = 166/513 (32%)
Query: 150 MAE--WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
MAE + N+ + +++ + G+K PT+IQ +P +L +R DI+G A+TGSGKT AF
Sbjct: 1 MAEVSFKDLNLIDDLVKNCERLGYKQPTEIQQQSIPYSLQSR-DIIGLAQTGSGKTAAFA 59
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
+P++ + +NP + +LAP
Sbjct: 60 LPVIQLL---YDNPAP------------------------------------YFCCVLAP 80
Query: 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
TRELA Q+ G ++ A +VGGM Q L+K PHI+VATPGRL
Sbjct: 81 TRELAYQISEQFEALGSNIGLRTATIVGGMDMMTQSIALSKKPHIIVATPGRL------- 133
Query: 328 HFHL-----TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
H HL L I +LV+DE DR+++ P I+D+
Sbjct: 134 HDHLENTKGFSLRNIKFLVMDEADRLLDMDFGP----IIDK------------------- 170
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 442
L IL + R T +FSAT+T +K K+ +
Sbjct: 171 --LLKILPK--------ERTTMLFSATMT-------------TKVAKLQRA--------- 198
Query: 443 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNI 502
++ +P V++++K TL + + KDSYL Y + G ++
Sbjct: 199 --SLSNPVKVEVSDKYQTVSTLLQHYLFFPFKMKDSYLVYLANEVAGHSM---------- 246
Query: 503 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 562
I T+T+ ++ +R++
Sbjct: 247 -----------IIFTRTVVDA----------------------------------QRISI 261
Query: 563 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 622
+L L +PLH ++Q RL L++F+ +IL+ATDVA+RGLDIP +++V++Y P
Sbjct: 262 ILRNLGFPAIPLHGQLSQSSRLGALNKFKAGGRNILVATDVASRGLDIPSVDYVVNYDTP 321
Query: 623 RTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
S+ YIHR GRTARA G + L+ ++ L
Sbjct: 322 SNSKDYIHRVGRTARAGRSGKAITLVTQYDVEL 354
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 65/136 (47%), Gaps = 19/136 (13%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ +LAPTRELA Q+ G ++ A +VGGM Q L+K PHI+VATPG
Sbjct: 73 YFCCVLAPTRELAYQISEQFEALGSNIGLRTATIVGGMDMMTQSIALSKKPHIIVATPGR 132
Query: 1414 L-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI--IIDDENLIQPKANSRE 1466
L + K L ++I++L + D L DMD IID I PK R
Sbjct: 133 LHDHLENTKGFSL-RNIKFLV----MDEADRLL-----DMDFGPIIDKLLKILPK--ERT 180
Query: 1467 NALMSKALVSKRKELQ 1482
L S + +K +LQ
Sbjct: 181 TMLFSATMTTKVAKLQ 196
Score = 45.1 bits (105), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 1224 SIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD 1283
S++Y+ + + +++HR GRTARA G + L+ ++ L ++ ++ K++ +
Sbjct: 311 SVDYVVNYDTPSNSKDYIHRVGRTARAGRSGKAITLVTQYDVELLQRIEKAINVKME--E 368
Query: 1284 FPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENL 1336
FP D+ + L+ +R++ A I +E + + + + DMD+ D NL
Sbjct: 369 FPHDKQAVPLLVERVNEASRIAAVELRESQQKKRKGKHSSRDDMDMDEDVANL 421
>gi|397649329|ref|YP_006489856.1| ATP-dependent RNA helicase [Streptococcus mutans GS-5]
gi|449878432|ref|ZP_21783625.1| ATP-dependent RNA helicase [Streptococcus mutans S1B]
gi|449895693|ref|ZP_21789519.1| ATP-dependent RNA helicase [Streptococcus mutans SF12]
gi|449917524|ref|ZP_21797265.1| ATP-dependent RNA helicase [Streptococcus mutans 15JP3]
gi|449938016|ref|ZP_21804845.1| ATP-dependent RNA helicase [Streptococcus mutans 2ST1]
gi|449945061|ref|ZP_21806953.1| ATP-dependent RNA helicase [Streptococcus mutans 11A1]
gi|449966513|ref|ZP_21812374.1| ATP-dependent RNA helicase [Streptococcus mutans 15VF2]
gi|449977205|ref|ZP_21816455.1| ATP-dependent RNA helicase [Streptococcus mutans 11VS1]
gi|449980880|ref|ZP_21817468.1| ATP-dependent RNA helicase [Streptococcus mutans 5SM3]
gi|449992425|ref|ZP_21822308.1| ATP-dependent RNA helicase [Streptococcus mutans NVAB]
gi|449998174|ref|ZP_21824217.1| ATP-dependent RNA helicase [Streptococcus mutans A9]
gi|450011428|ref|ZP_21829171.1| ATP-dependent RNA helicase [Streptococcus mutans A19]
gi|450026596|ref|ZP_21831935.1| ATP-dependent RNA helicase [Streptococcus mutans U138]
gi|450078617|ref|ZP_21851083.1| ATP-dependent RNA helicase [Streptococcus mutans N3209]
gi|450116641|ref|ZP_21864588.1| ATP-dependent RNA helicase [Streptococcus mutans ST1]
gi|450156792|ref|ZP_21878776.1| ATP-dependent RNA helicase [Streptococcus mutans 21]
gi|450183346|ref|ZP_21888598.1| ATP-dependent RNA helicase [Streptococcus mutans 24]
gi|392602898|gb|AFM81062.1| ATP-dependent RNA helicase [Streptococcus mutans GS-5]
gi|449148200|gb|EMB52105.1| ATP-dependent RNA helicase [Streptococcus mutans 11A1]
gi|449154166|gb|EMB57774.1| ATP-dependent RNA helicase [Streptococcus mutans 15JP3]
gi|449163543|gb|EMB66645.1| ATP-dependent RNA helicase [Streptococcus mutans 2ST1]
gi|449170036|gb|EMB72776.1| ATP-dependent RNA helicase [Streptococcus mutans 15VF2]
gi|449174867|gb|EMB77327.1| ATP-dependent RNA helicase [Streptococcus mutans 11VS1]
gi|449176330|gb|EMB78682.1| ATP-dependent RNA helicase [Streptococcus mutans 5SM3]
gi|449179705|gb|EMB81898.1| ATP-dependent RNA helicase [Streptococcus mutans NVAB]
gi|449181162|gb|EMB83284.1| ATP-dependent RNA helicase [Streptococcus mutans A9]
gi|449189536|gb|EMB91191.1| ATP-dependent RNA helicase [Streptococcus mutans A19]
gi|449189635|gb|EMB91281.1| ATP-dependent RNA helicase [Streptococcus mutans U138]
gi|449209834|gb|EMC10332.1| ATP-dependent RNA helicase [Streptococcus mutans N3209]
gi|449226812|gb|EMC26299.1| ATP-dependent RNA helicase [Streptococcus mutans ST1]
gi|449235283|gb|EMC34247.1| ATP-dependent RNA helicase [Streptococcus mutans 21]
gi|449243483|gb|EMC41906.1| ATP-dependent RNA helicase [Streptococcus mutans 24]
gi|449249495|gb|EMC47615.1| ATP-dependent RNA helicase [Streptococcus mutans S1B]
gi|449254168|gb|EMC52091.1| ATP-dependent RNA helicase [Streptococcus mutans SF12]
Length = 517
Score = 208 bits (530), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 123 bits (308), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|450003648|ref|ZP_21826168.1| ATP-dependent RNA helicase [Streptococcus mutans N29]
gi|449182133|gb|EMB84176.1| ATP-dependent RNA helicase [Streptococcus mutans N29]
Length = 517
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 123 bits (308), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|449952218|ref|ZP_21808893.1| ATP-dependent RNA helicase [Streptococcus mutans 11SSST2]
gi|449165426|gb|EMB68434.1| ATP-dependent RNA helicase [Streptococcus mutans 11SSST2]
Length = 517
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 123 bits (308), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|156549811|ref|XP_001606554.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Nasonia
vitripennis]
Length = 456
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 151/481 (31%), Positives = 237/481 (49%), Gaps = 84/481 (17%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M E+ NI II L G K PT IQ +P A+L+ KD +G A+TGSGKTLAF +P
Sbjct: 1 MTEFTDLNISSWIIDQLKLIGVKKPTPIQQNCIP-AILSGKDCIGCAKTGSGKTLAFALP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL ++L E+ ++AL+L PTR
Sbjct: 60 IL----------------------------QKLSEDPYG-----------IFALVLTPTR 80
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA Q+ + GK +K +VGGM Q + L + PHI+VATPGRL + L
Sbjct: 81 ELAFQIGDQFAAIGKTINLKKCTIVGGMDMVVQGQELARHPHIVVATPGRLAD--HLESC 138
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
+ L +I +LV+DE DR++ GHF E +++ + + RQ+ +FSAT+T +L
Sbjct: 139 NTFSLARIKFLVLDEADRLL-GGHFDEQLSVIFKAL----PKNRQSLLFSATITDAL--- 190
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
K K+VS + I D + K L + +LC D +D
Sbjct: 191 -------DKVKQVSTKEWFIWESTD------------DSGVATVKELDQRYVLCPKDVRD 231
Query: 1067 SYLYYFIL-----QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
++L I G ++F ++ + + L+ L + + LHA + Q++RL L
Sbjct: 232 AFLVEVIRTFRADNENGSIMIFTDTCKNCQLLSMTLNEVGFDNVALHAMIKQKERLSALS 291
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
+F+ + IL+ATDVAARGLDIP + VI++++P + YIHR GRTARA G+ + L+
Sbjct: 292 KFKSNHTKILIATDVAARGLDIPIVALVINHNIPNIPKEYIHRVGRTARAGRGGMAVSLV 351
Query: 1182 ESDEIPLYIKMFNSLEKKVD--LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN 1239
P I + +++E+ + L +F +++ + I +I + K E++IK + D
Sbjct: 352 T----PYDINLLHAIEETIGTKLTEFKVEDKEIVNIFTQISVTKR----EAEIKLDETDF 403
Query: 1240 W 1240
+
Sbjct: 404 Y 404
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 145/506 (28%), Positives = 219/506 (43%), Gaps = 148/506 (29%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M E+ NI II L G K PT IQ +P A+L+ KD +G A+TGSGKTLAF +P
Sbjct: 1 MTEFTDLNISSWIIDQLKLIGVKKPTPIQQNCIP-AILSGKDCIGCAKTGSGKTLAFALP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL ++L E+ ++AL+L PTR
Sbjct: 60 IL----------------------------QKLSEDPYG-----------IFALVLTPTR 80
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA Q+ + GK +K +VGGM Q + L + PHI+VATPGRL + L
Sbjct: 81 ELAFQIGDQFAAIGKTINLKKCTIVGGMDMVVQGQELARHPHIVVATPGRLAD--HLESC 138
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+ L +I +LV+DE DR++ GHF E ++++ + P+
Sbjct: 139 NTFSLARIKFLVLDEADRLL-GGHFDE------QLSVIFKALPKN--------------- 176
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
RQ+ +FSAT+T +L K K+VS + I D
Sbjct: 177 -----------RQSLLFSATITDAL----------DKVKQVSTKEWFIWESTD------- 208
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
+ K L + +LC D +D++L I RT
Sbjct: 209 -----DSGVATVKELDQRYVLCPKDVRDAFLVEVI-----RTF----------------- 241
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
+ D ++ + ++F ++ + + L+ L +
Sbjct: 242 ------------------RADNENGSI-----------MIFTDTCKNCQLLSMTLNEVGF 272
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+ LHA + Q++RL L +F+ + IL+ATDVAARGLDIP + VI++++P + YI
Sbjct: 273 DNVALHAMIKQKERLSALSKFKSNHTKILIATDVAARGLDIPIVALVINHNIPNIPKEYI 332
Query: 630 HRSGRTARANNEGLTVVLIESDEIPL 655
HR GRTARA G+ V L+ +I L
Sbjct: 333 HRVGRTARAGRGGMAVSLVTPYDINL 358
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y AL+L PTRELA Q+ + GK +K +VGGM Q + L + PHI+VATP
Sbjct: 69 YGIFALVLTPTRELAFQIGDQFAAIGKTINLKKCTIVGGMDMVVQGQELARHPHIVVATP 128
Query: 1412 GALS 1415
G L+
Sbjct: 129 GRLA 132
>gi|450047104|ref|ZP_21839304.1| ATP-dependent RNA helicase [Streptococcus mutans N34]
gi|449197930|gb|EMB99069.1| ATP-dependent RNA helicase [Streptococcus mutans N34]
Length = 517
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKID-----------------------------------VTNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 123 bits (308), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKID-----------------------------------VTNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
Length = 526
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 213/432 (49%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ RN + AL++APTREL
Sbjct: 61 ----NKIDT-----------------------------------NRNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ ++K
Sbjct: 142 DH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPEAIKRI-- 191
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
+K +Q+ P+ V + K T + + I K +K D+
Sbjct: 192 ----------------GVKFMQN------PEHVKVAAKELTTDLVDQYYIRVKEQDKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 IDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+ + L KK
Sbjct: 350 -YLSIIEKLTKK 360
Score = 127 bits (319), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 127/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ RN + AL++APTREL
Sbjct: 61 ----NKIDT-----------------------------------NRNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S PE + R
Sbjct: 142 DH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPE---AIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + P V + LT L
Sbjct: 191 IGVKFMQNPEHVKVAAKELTTDL 213
Score = 93.6 bits (231), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+++P+ V + K T + + I K +K D+ + P ++VF + V L
Sbjct: 196 MQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLDHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|259488879|tpe|CBF88686.1| TPA: ATP-dependent RNA helicase (Drs1), putative (AFU_orthologue;
AFUA_1G14990) [Aspergillus nidulans FGSC A4]
Length = 814
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/465 (31%), Positives = 222/465 (47%), Gaps = 81/465 (17%)
Query: 715 PDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN 774
PDD+ + E SD +++ K+K + K + T++ + F + FN
Sbjct: 254 PDDEAS---EPDSDAESEVDAEEEAKRKAFFAPEEKTDEDAATNSAKRSFQE------FN 304
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL ++
Sbjct: 305 LSRPILRGLAAVNFTNPTPIQQKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERLL-- 361
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
F + IL PTRELA+Q N
Sbjct: 362 ----------------------------------FRPRKVPTSRVAILMPTRELAVQCYN 387
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
YT + +VGG S +Q +L K P +++ATPGR + ++ + +I
Sbjct: 388 VATKLATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLEI 447
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
LV+DE DRM+E G EL IL T + RQT +FSAT+T S+ + + G +
Sbjct: 448 --LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDSVDKLIRV--GLN 498
Query: 1015 KSKKV---SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
+ ++ +K + ++ +Q+ + ++ + D++ YL +
Sbjct: 499 RPVRLMVDTKKNTAVTLVQEFVRLRP----------------------GREDKRLGYLLH 536
Query: 1072 FILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + GR +VF R+ + +L LH SM+Q QR+K+++ FRD N +
Sbjct: 537 LCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNF 596
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 597 LLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSG 641
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 132/297 (44%), Gaps = 53/297 (17%)
Query: 98 PDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN 157
PDD+ + E SD S +++ K+K + K + T++ + F + FN
Sbjct: 254 PDDEAS---EPDSDAESEVDAEEEAKRKAFFAPEEKTDEDAATNSAKRSFQE------FN 304
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL ++
Sbjct: 305 LSRPILRGLAAVNFTNPTPIQQKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERLL-- 361
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
F + IL PTRELA+Q N
Sbjct: 362 ----------------------------------FRPRKVPTSRVAILMPTRELAVQCYN 387
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
YT + +VGG S +Q +L K P +++ATPGR + ++ + +I
Sbjct: 388 VATKLATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLEI 447
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
LV+DE DRM+E G EL IL T + RQTM+ S + + L RV +
Sbjct: 448 --LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDSVDKLIRVGL 497
Score = 108 bits (269), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 528 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ D++ YL + + + GR +VF R+ + +L LH SM+Q QR+K+
Sbjct: 526 REDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKS 585
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
++ FRD N + LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 586 VESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSG 641
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F R + S A IL PTRELA+Q N YT + +VGG S +Q +L K
Sbjct: 360 LLFRPRKVPTSRVA-ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKK 418
Query: 1403 CPHILVATPG 1412
P +++ATPG
Sbjct: 419 RPDVIIATPG 428
>gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase, DEAD-box family [Streptococcus mutans
UA159]
gi|387786557|ref|YP_006251653.1| ATP-dependent RNA helicase [Streptococcus mutans LJ23]
gi|449868045|ref|ZP_21779892.1| ATP-dependent RNA helicase [Streptococcus mutans U2B]
gi|449873594|ref|ZP_21781776.1| ATP-dependent RNA helicase [Streptococcus mutans 8ID3]
gi|449900440|ref|ZP_21791449.1| ATP-dependent RNA helicase [Streptococcus mutans R221]
gi|449905661|ref|ZP_21793153.1| ATP-dependent RNA helicase [Streptococcus mutans M230]
gi|449987637|ref|ZP_21820439.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM2]
gi|450054177|ref|ZP_21841677.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM1]
gi|450064682|ref|ZP_21845431.1| ATP-dependent RNA helicase [Streptococcus mutans NLML5]
gi|450074791|ref|ZP_21849420.1| ATP-dependent RNA helicase [Streptococcus mutans M2A]
gi|450084208|ref|ZP_21853214.1| ATP-dependent RNA helicase [Streptococcus mutans N66]
gi|450103709|ref|ZP_21859410.1| ATP-dependent RNA helicase [Streptococcus mutans SF1]
gi|450108165|ref|ZP_21861307.1| ATP-dependent RNA helicase [Streptococcus mutans SF14]
gi|450161259|ref|ZP_21880452.1| ATP-dependent RNA helicase [Streptococcus mutans 66-2A]
gi|450172283|ref|ZP_21884450.1| ATP-dependent RNA helicase [Streptococcus mutans SM4]
gi|450178263|ref|ZP_21886619.1| ATP-dependent RNA helicase [Streptococcus mutans SM1]
gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus
mutans UA159]
gi|379132958|dbj|BAL69710.1| ATP-dependent RNA helicase [Streptococcus mutans LJ23]
gi|449153879|gb|EMB57510.1| ATP-dependent RNA helicase [Streptococcus mutans 8ID3]
gi|449175876|gb|EMB78251.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM2]
gi|449197934|gb|EMB99072.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM1]
gi|449203267|gb|EMC04138.1| ATP-dependent RNA helicase [Streptococcus mutans NLML5]
gi|449208651|gb|EMC09229.1| ATP-dependent RNA helicase [Streptococcus mutans M2A]
gi|449212021|gb|EMC12405.1| ATP-dependent RNA helicase [Streptococcus mutans N66]
gi|449217050|gb|EMC17127.1| ATP-dependent RNA helicase [Streptococcus mutans SF1]
gi|449220963|gb|EMC20781.1| ATP-dependent RNA helicase [Streptococcus mutans SF14]
gi|449238898|gb|EMC37638.1| ATP-dependent RNA helicase [Streptococcus mutans 66-2A]
gi|449242989|gb|EMC41471.1| ATP-dependent RNA helicase [Streptococcus mutans SM1]
gi|449243022|gb|EMC41497.1| ATP-dependent RNA helicase [Streptococcus mutans SM4]
gi|449257367|gb|EMC55046.1| ATP-dependent RNA helicase [Streptococcus mutans R221]
gi|449258022|gb|EMC55626.1| ATP-dependent RNA helicase [Streptococcus mutans M230]
gi|449263316|gb|EMC60715.1| ATP-dependent RNA helicase [Streptococcus mutans U2B]
Length = 517
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 123 bits (308), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|449880947|ref|ZP_21784188.1| ATP-dependent RNA helicase [Streptococcus mutans SA38]
gi|449925904|ref|ZP_21800489.1| ATP-dependent RNA helicase [Streptococcus mutans 4SM1]
gi|449161097|gb|EMB64311.1| ATP-dependent RNA helicase [Streptococcus mutans 4SM1]
gi|449252101|gb|EMC50090.1| ATP-dependent RNA helicase [Streptococcus mutans SA38]
Length = 517
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALDG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALDG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|325977801|ref|YP_004287517.1| DEAD/DEAH box helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386337311|ref|YP_006033480.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|334279947|dbj|BAK27521.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 526
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 212/432 (49%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
I D N RN + AL++APTREL
Sbjct: 61 DKI----------DTN-----------------------------RNLVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ ++K
Sbjct: 142 DH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPEAIKRI-- 191
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
+K +Q+ P+ V + K T + + I K +K D+
Sbjct: 192 ----------------GVKFMQN------PEHVKVAAKELTTDLVDQYYIRVKEQDKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 IDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+ + L KK
Sbjct: 350 -YLSIIEKLTKK 360
Score = 127 bits (318), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 126/263 (47%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
I D N RN + AL++APTREL
Sbjct: 61 DKI----------DTN-----------------------------RNLVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S PE + R
Sbjct: 142 DH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPE---AIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + P V + LT L
Sbjct: 191 IGVKFMQNPEHVKVAAKELTTDL 213
Score = 94.0 bits (232), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+++P+ V + K T + + I K +K D+ + P ++VF + V L
Sbjct: 196 MQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 17/132 (12%)
Query: 1347 SRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 1406
+RNL AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI
Sbjct: 66 NRNL---VQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHI 122
Query: 1407 LVATPGALSLKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKA 1462
+V TPG L +DL K ++++E+ I + D L +M + D E +I
Sbjct: 123 VVGTPGRL----LDLIKRKALKLDHVETLI-LDEADEML-----NMGFLEDIEAIISRVP 172
Query: 1463 NSRENALMSKAL 1474
+R+ L S +
Sbjct: 173 ETRQTLLFSATM 184
>gi|50551977|ref|XP_503463.1| YALI0E02552p [Yarrowia lipolytica]
gi|74659870|sp|Q6C799.1|DBP8_YARLI RecName: Full=ATP-dependent RNA helicase DBP8
gi|49649332|emb|CAG79042.1| YALI0E02552p [Yarrowia lipolytica CLIB122]
Length = 442
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 130/422 (30%), Positives = 208/422 (49%), Gaps = 71/422 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +PE + +L P+ IQ +P ++ KD +G A TGSGKT+AF P+L
Sbjct: 3 FTDLGLPEWLNESLSNMAITKPSAIQKACIPQ-IMKGKDCIGGARTGSGKTIAFAAPMLA 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
E ++ G+ + L+L PTRELA
Sbjct: 62 ----------EWSKDPCGI-----------------------------FGLVLTPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL-GHFHL 948
IQ+ G ++VA + GG+ KQ L K PH ++ATPGRL + I+ G +
Sbjct: 83 IQIAEQFTALGANMNIRVALIYGGVDMVKQSLELQKMPHFVIATPGRLADHIRSSGEDTI 142
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
++ Y+V+DE DR++ G P+LK +D + RQT +F+AT+T +++ +L
Sbjct: 143 RGFRRVRYVVMDEADRLLTPGFVPDLKTCMD---LLPDPSKRQTLLFTATVTDAVR-ALK 198
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
+ G+ KG P I ++ I + TLT+S + +++Y
Sbjct: 199 DRTGE-------KGPPFIH--------------EIASDIAVPSTLTQSYLFLPGYVREAY 237
Query: 1069 LYYFILQHPGR----TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
L+ IL HP ++F N + + L ++L L LH+ M Q++R+ L RFR
Sbjct: 238 LWA-ILTHPDNEKKSAIIFVNRTQTAETLRRMLMALDVKTASLHSEMRQQERVNALGRFR 296
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
Q +L+ATDVA+RGLDIP +E VI++ +P ++ YIHR GRTARA +G ++ L+
Sbjct: 297 AQAARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTER 356
Query: 1185 EI 1186
++
Sbjct: 357 DV 358
Score = 184 bits (466), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 147/568 (25%), Positives = 239/568 (42%), Gaps = 161/568 (28%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +PE + +L P+ IQ +P ++ KD +G A TGSGKT+AF P+L
Sbjct: 3 FTDLGLPEWLNESLSNMAITKPSAIQKACIPQ-IMKGKDCIGGARTGSGKTIAFAAPMLA 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
E ++ G+ + L+L PTRELA
Sbjct: 62 ----------EWSKDPCGI-----------------------------FGLVLTPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
IQ+ G ++VA + GG+ KQ L K PH ++ATPGRL + I+ G +
Sbjct: 83 IQIAEQFTALGANMNIRVALIYGGVDMVKQSLELQKMPHFVIATPGRLADHIRSSGEDTI 142
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
++ Y+V+DE DR++ G P+LK +D
Sbjct: 143 RGFRRVRYVVMDEADRLLTPGFVPDLKTCMD----------------------------- 173
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
+ RQT +F+AT+T +++ +L + G+ KG P I
Sbjct: 174 --LLPDPSKRQTLLFTATVTDAVR-ALKDRTGE-------KGPPFIH------------- 210
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
++ I + TLT+S + +++YL+ IL HP
Sbjct: 211 -EIASDIAVPSTLTQSYLFLPGYVREAYLWA-ILTHP----------------------- 245
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+EK S ++F N + + L ++L L
Sbjct: 246 -----------------DNEKKS------------AIIFVNRTQTAETLRRMLMALDVKT 276
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
LH+ M Q++R+ L RFR Q +L+ATDVA+RGLDIP +E VI++ +P ++ YIHR
Sbjct: 277 ASLHSEMRQQERVNALGRFRAQAARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHR 336
Query: 632 SGRTARANNEGLTVVLIESDEIPLKT-----------KFNLQEEENNEEEERAEADKEKT 680
GRTARA +G +V L+ ++ T K++L E++ EE A K
Sbjct: 337 VGRTARAGRKGQSVSLVTERDVTRVTNIEERVGTKMEKYDLIEDDKVVEEYLTPASTAKR 396
Query: 681 E---DINVTVSSKKKKLKRKQNPSQVEV 705
+ D+ ++K+++RK+ V++
Sbjct: 397 QAVLDMEAENFGERKRIQRKKAGLDVDM 424
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
L+L PTRELAIQ+ G ++VA + GG+ KQ L K PH ++ATPG L+
Sbjct: 72 GLVLTPTRELAIQIAEQFTALGANMNIRVALIYGGVDMVKQSLELQKMPHFVIATPGRLA 131
>gi|212722850|ref|NP_001131651.1| uncharacterized protein LOC100193011 [Zea mays]
gi|194692160|gb|ACF80164.1| unknown [Zea mays]
gi|413934956|gb|AFW69507.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 455
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 145/466 (31%), Positives = 233/466 (50%), Gaps = 81/466 (17%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
Q + + + I ++ A G+K PT+IQ+ +P AL KD++ A+TGSGKT AF +
Sbjct: 22 QASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQG-KDLIALAQTGSGKTGAFAL 80
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
PIL +E+L + E + +A +L+PT
Sbjct: 81 PIL------------------------QELLSNRQAEQS------------FFACVLSPT 104
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
RELAIQ+ G ++ + +VGG+ +Q+ + K PHI+V TPGRL +
Sbjct: 105 RELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKRPHIVVGTPGRLLD------ 158
Query: 946 FHLTE-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000
HLTE L KI YLV+DE D+++ E + LD + ++E + R+TF+FSAT+T
Sbjct: 159 -HLTETKGFSLKKIKYLVLDEADKLLNV----EFEKSLDDI-LSEMPKDRRTFLFSATMT 212
Query: 1001 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 1060
KKV+K LQ +++P V+++ K +L +
Sbjct: 213 ----------------KKVNK-------LQRAC-LRNPAKVEVSSKYSTVDSLKQEFYFV 248
Query: 1061 KHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
D+KD YL + + + ++F + S + L +L L + + M+Q +RL
Sbjct: 249 PADDKDCYLLHVLNERLESMIMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGA 308
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
L+RF+ ++ +IL+ TDVA+RGLDI G++ VI+Y +P S+ Y+HR GRTARA G +
Sbjct: 309 LNRFKAKDCNILICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVS 368
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
L+ E ++ + L KK+D +D + ++K I AK I
Sbjct: 369 LVNQYEAQWFVLIEQLLGKKID--QCKVDRDEVLILKGPISDAKRI 412
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 160/601 (26%), Positives = 258/601 (42%), Gaps = 180/601 (29%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
Q + + + I ++ A G+K PT+IQ+ +P AL KD++ A+TGSGKT AF +
Sbjct: 22 QASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQG-KDLIALAQTGSGKTGAFAL 80
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
PIL +E+L + E + +A +L+PT
Sbjct: 81 PIL------------------------QELLSNRQAEQS------------FFACVLSPT 104
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
RELAIQ+ G ++ + +VGG+ +Q+ + K PHI+V TPGRL +
Sbjct: 105 RELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKRPHIVVGTPGRLLD------ 158
Query: 329 FHLTE-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
HLTE L KI YLV+DE D+++ N+
Sbjct: 159 -HLTETKGFSLKKIKYLVLDEADKLL---------NV----------------------- 185
Query: 384 ELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL 443
E + LD + ++E + R+TF+FSAT+T KKV+K LQ
Sbjct: 186 EFEKSLDDI-LSEMPKDRRTFLFSATMT----------------KKVNK-------LQRA 221
Query: 444 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
+++P V+++ K +L + D+KD YL +
Sbjct: 222 C-LRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHV-------------------- 260
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
L E++ ES I+ +F + S + L +
Sbjct: 261 ------LNERL-------ESMIM----------------------IFVRTCESTRLLALM 285
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
L L + + M+Q +RL L+RF+ ++ +IL+ TDVA+RGLDI G++ VI+Y +P
Sbjct: 286 LRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILICTDVASRGLDIQGVDMVINYDIPM 345
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDI 683
S+ Y+HR GRTARA G V L+ E F L E+ ++ ++ + D+++ +
Sbjct: 346 NSKDYVHRVGRTARAGRSGYAVSLVNQYEAQW---FVLIEQLLGKKIDQCKVDRDEVLIL 402
Query: 684 NVTVSSKKK----KLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKK 739
+S K+ KLK + N D D EE++ HS++ K K
Sbjct: 403 KGPISDAKRIALTKLKDSGGHKK------RRNVGDDD------EEVEDHSSHSRRPKSLK 450
Query: 740 K 740
+
Sbjct: 451 R 451
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 1344 IFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
+ +R S+ A +L+PTRELAIQ+ G ++ + +VGG+ +Q+ + K
Sbjct: 86 LLSNRQAEQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKR 145
Query: 1404 PHILVATPGAL 1414
PHI+V TPG L
Sbjct: 146 PHIVVGTPGRL 156
>gi|315635445|ref|ZP_07890711.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
gi|315480203|gb|EFU70870.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
Length = 516
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 209/429 (48%), Gaps = 80/429 (18%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
FN E + +A+ + GFK P+ IQ +P L R DIVG A TG+GKT AFG+PIL I
Sbjct: 6 FNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGR-DIVGQAHTGTGKTAAFGLPILNKIK 64
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
K SG+E A+++ PTRELA+QV
Sbjct: 65 AK-----------SGVE-----------------------------AVVIVPTRELAMQV 84
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ + GK+ + A V GG + +Q++++ ++VATPGR + ++ +
Sbjct: 85 SDELYRFGKFLGINTATVYGGQAYARQIKLIENSS-VIVATPGRFLDLLRGDKISI---- 139
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
K ++++DE D M++ G ++K I T + RQT +FSAT+ ++KN
Sbjct: 140 KPKFVILDEADEMLDMGFLDDIKEIF-----TFLPENRQTLLFSATMPTAIKNL------ 188
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY-Y 1071
+K + +K P+ V LT+ +T++ + E+D L
Sbjct: 189 ---AKTI---------------LKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDALIRL 230
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
F ++P ++++FC + V RL+ L LH M Q+QR + + F+ IL
Sbjct: 231 FDFKNPKKSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEIL 290
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATDVAARGLD+ + HV +YH+P SE Y+HR GRT RA EG+ + ++ P +
Sbjct: 291 IATDVAARGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIV----TPHEFR 346
Query: 1192 MFNSLEKKV 1200
M +EK +
Sbjct: 347 MLQKIEKSI 355
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 134/500 (26%), Positives = 207/500 (41%), Gaps = 158/500 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
FN E + +A+ + GFK P+ IQ +P L R DIVG A TG+GKT AFG+PIL I
Sbjct: 6 FNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGR-DIVGQAHTGTGKTAAFGLPILNKIK 64
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
K SG+E A+++ PTRELA+QV
Sbjct: 65 AK-----------SGVE-----------------------------AVVIVPTRELAMQV 84
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ + GK+ + A V GG + +Q++++ ++VATPGR + ++ +
Sbjct: 85 SDELYRFGKFLGINTATVYGGQAYARQIKLIENS-SVIVATPGRFLDLLRGDKISI---- 139
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
K ++++DE D M++ G ++K I T
Sbjct: 140 KPKFVILDEADEMLDMGFLDDIKEIF---------------------------------T 166
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
+ RQT +FSAT+ ++KN +K + +K P+ V LT
Sbjct: 167 FLPENRQTLLFSATMPTAIKNL---------AKTI---------------LKEPEFVTLT 202
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
+ +T++ + E+D L L + K+PK
Sbjct: 203 KSDVTNSKITQTFYVVDEKERDDALIR----------------LFDFKNPK--------- 237
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+S I C+ +KD V RL+ L LH
Sbjct: 238 ------KSIIFCRT-KKD-----------------------VDRLSTFLVSQGFMAKALH 267
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M Q+QR + + F+ IL+ATDVAARGLD+ + HV +YH+P SE Y+HR GRT
Sbjct: 268 GDMEQKQREEAIRAFKSSKLEILIATDVAARGLDVNDVTHVFNYHLPFDSESYVHRIGRT 327
Query: 636 ARANNEGLTVVLIESDEIPL 655
RA EG+ + ++ E +
Sbjct: 328 GRAGKEGMAISIVTPHEFRM 347
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1355 DALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+A+++ PTRELA+QV + + GK+ + A V GG + +Q++++ ++VATPG
Sbjct: 70 EAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENS-SVIVATPG 126
>gi|449933031|ref|ZP_21803081.1| ATP-dependent RNA helicase [Streptococcus mutans 3SN1]
gi|449160654|gb|EMB63903.1| ATP-dependent RNA helicase [Streptococcus mutans 3SN1]
Length = 517
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTYLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTYL 213
Score = 97.4 bits (241), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTYLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|444375384|ref|ZP_21174677.1| ATP-dependent RNA helicase [Helicobacter pylori A45]
gi|443620082|gb|ELT80535.1| ATP-dependent RNA helicase [Helicobacter pylori A45]
Length = 492
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 208/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMP---------------- 203
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
DP IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 204 ------DP-IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ K++L + P
Sbjct: 377 DSKIELFEIP 386
Score = 116 bits (291), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 44/203 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILD 362
+V+DE+D M++ G +++ I D
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFD 187
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLI 648
+ L+
Sbjct: 358 ITLV 361
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|450121873|ref|ZP_21866488.1| ATP-dependent RNA helicase [Streptococcus mutans ST6]
gi|449228714|gb|EMC28070.1| ATP-dependent RNA helicase [Streptococcus mutans ST6]
Length = 517
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ H+ +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHIYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 123 bits (308), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ H+ +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHIYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|302823844|ref|XP_002993570.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
gi|300138582|gb|EFJ05345.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
Length = 434
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 141/465 (30%), Positives = 228/465 (49%), Gaps = 84/465 (18%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + E ++ A + G+K PT IQ +P AL R D++G A+TGSGKT AF +PIL
Sbjct: 10 FGELGVREELVDACTKLGWKAPTPIQVEALPLALQGR-DLIGLAQTGSGKTAAFALPILQ 68
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ + + +A +L+PTRELA
Sbjct: 69 ALFQQC---------------------------------------HPFFACVLSPTRELA 89
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
IQ+ G V+ +VGG+S Q L K PHI+VATPGRL + HLT
Sbjct: 90 IQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGKNPHIVVATPGRLLD-------HLT 142
Query: 950 -----ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004
L + YLV+DE D+++ + E+ IL V + R+TF+FSAT+T+
Sbjct: 143 NTKGFSLRNVKYLVLDEADKILHNDFEKEVDEILKVV-----PRERKTFLFSATMTN--- 194
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
KV+K LQ +++P V+++ K TL + +
Sbjct: 195 -------------KVAK-------LQRAC-LRNPTKVEVSSKYTTALTLKQEYVFVPAKH 233
Query: 1065 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
KD Y + + + G T +VF + S +RL +L L +P+ M+Q +R L +F
Sbjct: 234 KDCYFVFLLNEMAGSTAMVFTRTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLKF 293
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ + ++L+ TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G + ++
Sbjct: 294 KAGDRNLLICTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGRAISIVTQ 353
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL 1228
++ LY ++ + + + LP+FP + L+++R+ A+ + +
Sbjct: 354 YDVDLYKRIEDLI--GMTLPEFPAKADEVLLLEERVSEAQRLAAM 396
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 149/561 (26%), Positives = 230/561 (40%), Gaps = 176/561 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + E ++ A + G+K PT IQ +P AL R D++G A+TGSGKT AF +PIL
Sbjct: 10 FGELGVREELVDACTKLGWKAPTPIQVEALPLALQGR-DLIGLAQTGSGKTAAFALPILQ 68
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ + + +A +L+PTRELA
Sbjct: 69 ALFQQC---------------------------------------HPFFACVLSPTRELA 89
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
IQ+ G V+ +VGG+S Q L K PHI+VATPGRL + HLT
Sbjct: 90 IQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGKNPHIVVATPGRLLD-------HLT 142
Query: 333 -----ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387
L + YLV+DE D+++ + E+ IL V PR+
Sbjct: 143 NTKGFSLRNVKYLVLDEADKILHNDFEKEVDEILKVV-------PRE------------- 182
Query: 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 447
R+TF+FSAT+T+ KV+K LQ ++
Sbjct: 183 -------------RKTFLFSATMTN----------------KVAK-------LQRAC-LR 205
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
+P V+++ K TL + + KD Y + + + G T
Sbjct: 206 NPTKVEVSSKYTTALTLKQEYVFVPAKHKDCYFVFLLNEMAGST---------------- 249
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
+ T+T C+S +RL +L L
Sbjct: 250 -----AMVFTRT-------------------------------CDS---TRRLALILRSL 270
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+P+ M+Q +R L +F+ + ++L+ TDVA+RGLDIP ++ VI+Y +P S+
Sbjct: 271 GFGAIPISGQMSQSKRSGALLKFKAGDRNLLICTDVASRGLDIPSVDVVINYDIPTNSKD 330
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEA 675
YIHR GRTARA G + ++ ++ L + F + +E EER +EA
Sbjct: 331 YIHRVGRTARAGRSGRAISIVTQYDVDLYKRIEDLIGMTLPEFPAKADEVLLLEERVSEA 390
Query: 676 DKEKTEDINVTVSSKKKKLKR 696
+ I +SKK K +R
Sbjct: 391 QRLAAMHIREKDASKKSKKRR 411
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
+ + A +L+PTRELAIQ+ G V+ +VGG+S Q L K PHI+VATP
Sbjct: 75 HPFFACVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGKNPHIVVATP 134
Query: 1412 GAL 1414
G L
Sbjct: 135 GRL 137
>gi|449921723|ref|ZP_21799071.1| ATP-dependent RNA helicase [Streptococcus mutans 1SM1]
gi|449156658|gb|EMB60119.1| ATP-dependent RNA helicase [Streptococcus mutans 1SM1]
Length = 517
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVVPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 123 bits (308), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------TNNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVVPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 493
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 142/441 (32%), Positives = 224/441 (50%), Gaps = 79/441 (17%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+++ A + G+K PT IQS +P AL R DI+G AETGSGKT +F +PIL ++ K +
Sbjct: 80 DSLCEACDKMGYKAPTPIQSESIPLALQGR-DIIGLAETGSGKTASFVLPILQALMEKPQ 138
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
+ + L+LAPTRELA Q+
Sbjct: 139 S---------------------------------------FFGLVLAPTRELAYQISLAC 159
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYK 953
G V+ +VGGM Q L K PHI+VATPGRL L H T+ L
Sbjct: 160 ESLGATINVRSTTLVGGMDMVPQSIALGKKPHIIVATPGRL-----LDHLENTKGFSLRS 214
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 1013
+ +LV+DE DR+++ P L IL +V E R+TF+FSATL+ ++
Sbjct: 215 LKFLVMDEADRLLDMDFGPILDKIL-KVLPRE----RRTFLFSATLSSKVE--------- 260
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYYF 1072
S++R ++ +P V ++ K +TL ++ +L + KD YL Y
Sbjct: 261 -----------SLQRA----SLSNPARVSISSSKYATVETLQQTYLLRPYKHKDIYLVYL 305
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G++ ++F ++ +R+ LL L +PLH M+Q RL L +FR ++ IL
Sbjct: 306 LHEFIGQSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREIL 365
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATDVAARGLDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ ++ +
Sbjct: 366 VATDVAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVEIWQR 425
Query: 1192 MFNSLEKKVDLPDFPIDESVL 1212
+ ++ K++ P DE+++
Sbjct: 426 IEAAMGKELAEYPAPKDEAMV 446
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 140/493 (28%), Positives = 210/493 (42%), Gaps = 161/493 (32%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+++ A + G+K PT IQS +P AL R DI+G AETGSGKT +F +PIL ++ K +
Sbjct: 80 DSLCEACDKMGYKAPTPIQSESIPLALQGR-DIIGLAETGSGKTASFVLPILQALMEKPQ 138
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
+ + L+LAPTRELA Q+
Sbjct: 139 S---------------------------------------FFGLVLAPTRELAYQISLAC 159
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYK 336
G V+ +VGGM Q L K PHI+VATPGRL L H T+ L
Sbjct: 160 ESLGATINVRSTTLVGGMDMVPQSIALGKKPHIIVATPGRL-----LDHLENTKGFSLRS 214
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396
+ +LV+DE DR+++ P L IL + PR+
Sbjct: 215 LKFLVMDEADRLLDMDFGPILDKILKVL-------PRE---------------------- 245
Query: 397 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL-T 455
R+TF+FSATL+ ++ S++R ++ +P V + +
Sbjct: 246 ----RRTFLFSATLSSKVE--------------------SLQR----ASLSNPARVSISS 277
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K +TL ++ +L + KD YL Y + + G+++ I
Sbjct: 278 SKYATVETLQQTYLLRPYKHKDIYLVYLLHEFIGQSV---------------------II 316
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+T+ E++ R+ LL L +PLH
Sbjct: 317 FMRTVHETQ----------------------------------RVAFLLRGLGFGAIPLH 342
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M+Q RL L +FR ++ IL+ATDVAARGLDIP ++ V+++ +P S+ YIHR GRT
Sbjct: 343 GQMSQSARLGALGKFRSKSREILVATDVAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRT 402
Query: 636 ARANNEGLTVVLI 648
ARA G + +
Sbjct: 403 ARAGKSGTAISFV 415
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S+ L+LAPTRELA Q+ G V+ +VGGM Q L K PHI+VATPG
Sbjct: 139 SFFGLVLAPTRELAYQISLACESLGATINVRSTTLVGGMDMVPQSIALGKKPHIIVATPG 198
Query: 1413 ALSLKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDI--IIDDENLIQPKANSRENAL 1469
L L ++ K K + + D L DMD I+D + P+ R L
Sbjct: 199 RL-LDHLENTKGFSLRSLKFLVMDEADRLL-----DMDFGPILDKILKVLPR--ERRTFL 250
Query: 1470 MSKALVSKRKELQ 1482
S L SK + LQ
Sbjct: 251 FSATLSSKVESLQ 263
>gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34]
gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus
UCN34]
Length = 526
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 212/432 (49%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
I D N RN + AL++APTREL
Sbjct: 61 DKI----------DTN-----------------------------RNLVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ ++K
Sbjct: 142 DH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPEAIKRI-- 191
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
+K +Q+ P+ V + K T + + I K +K D+
Sbjct: 192 ----------------GVKFMQN------PEHVKVAAKELTTDLVDQYYIRVKEQDKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 IDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+ + L KK
Sbjct: 350 -YLSIIEKLTKK 360
Score = 126 bits (317), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 126/263 (47%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
I D N RN + AL++APTREL
Sbjct: 61 DKI----------DTN-----------------------------RNLVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S PE + R
Sbjct: 142 DH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPE---AIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + P V + LT L
Sbjct: 191 IGVKFMQNPEHVKVAAKELTTDL 213
Score = 93.6 bits (231), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+++P+ V + K T + + I K +K D+ + P ++VF + V L
Sbjct: 196 MQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 17/132 (12%)
Query: 1347 SRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 1406
+RNL AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI
Sbjct: 66 NRNL---VQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHI 122
Query: 1407 LVATPGALSLKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKA 1462
+V TPG L +DL K ++++E+ I + D L +M + D E +I
Sbjct: 123 VVGTPGRL----LDLIKRKALKLDHVETLI-LDEADEML-----NMGFLEDIEAIISRVP 172
Query: 1463 NSRENALMSKAL 1474
+R+ L S +
Sbjct: 173 ETRQTLLFSATM 184
>gi|403412636|emb|CCL99336.1| predicted protein [Fibroporia radiculosa]
Length = 974
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 145/466 (31%), Positives = 232/466 (49%), Gaps = 78/466 (16%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + + ++ AL Q FK PT IQ +P AL R DI+G A TGSGKT AF +PIL
Sbjct: 538 DFRSLGLIDPLLEALEQLNFKHPTDIQVEALPHALQGR-DIIGVASTGSGKTAAFALPIL 596
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
++L EE L+A +LAPTREL
Sbjct: 597 ----------------------------QKLWEEP-----------KGLFACVLAPTREL 617
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A Q+ G V+ +VGG+ Q L K PHI+VATPGRL + ++ +
Sbjct: 618 AYQISQQFEGLGSAMGVRCVTIVGGLDMMAQSVALAKRPHIVVATPGRLIDHLE--NTKG 675
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L + +LV+DE DR+++ P + IL + + R T++FSAT+T
Sbjct: 676 FSLRGLKFLVLDEADRLLDMDFGPIIDKILKII-----PKERTTYLFSATMT-------- 722
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
+K K+ + ++ +P V+++EK TL + + +KD +
Sbjct: 723 -----TKVAKLQRA-----------SLSNPVRVEVSEKYSTVSTLLQYYLFIPLVQKDVH 766
Query: 1069 LYYF---ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
L Y + Q+ ++F ++ +RL+ +L L +PLH ++Q RL L +F+
Sbjct: 767 LIYLANTLAQN--SIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKS 824
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
IL+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ +
Sbjct: 825 GGRKILVATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSVTLVTQYD 884
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ L ++ ++ KK++L +P D ++L+++R+D A + E K
Sbjct: 885 VELIQRIETTIGKKMEL--WPTDAEEIALLRERVDEASRVAINELK 928
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 138/504 (27%), Positives = 212/504 (42%), Gaps = 154/504 (30%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + + ++ AL Q FK PT IQ +P AL R DI+G A TGSGKT AF +PIL
Sbjct: 538 DFRSLGLIDPLLEALEQLNFKHPTDIQVEALPHALQGR-DIIGVASTGSGKTAAFALPIL 596
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
++L EE L+A +LAPTREL
Sbjct: 597 ----------------------------QKLWEEP-----------KGLFACVLAPTREL 617
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A Q+ G V+ +VGG+ Q L K PHI+VATPGRL + ++ +
Sbjct: 618 AYQISQQFEGLGSAMGVRCVTIVGGLDMMAQSVALAKRPHIVVATPGRLIDHLE--NTKG 675
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L + +LV+DE DR+++ P + IL + P++
Sbjct: 676 FSLRGLKFLVLDEADRLLDMDFGPIIDKILKII-------PKE----------------- 711
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R T++FSAT+T +K K+ + ++ +P
Sbjct: 712 ---------RTTYLFSATMT-------------TKVAKLQRA-----------SLSNPVR 738
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V+++EK TL + + +KD +L Y
Sbjct: 739 VEVSEKYSTVSTLLQYYLFIPLVQKDVHLIY----------------------------- 769
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+ TL ++ I ++F ++ +RL+ +L L
Sbjct: 770 ----LANTLAQNSI----------------------IIFTRTVHDAQRLSIILRTLGFPA 803
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+PLH ++Q RL L +F+ IL+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR
Sbjct: 804 VPLHGQLSQSARLGALGKFKSGGRKILVATDVASRGLDIPHVDVVINYDIPTHSKDYIHR 863
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTARA G +V L+ ++ L
Sbjct: 864 VGRTARAGRSGKSVTLVTQYDVEL 887
Score = 54.3 bits (129), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 65/134 (48%), Gaps = 19/134 (14%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A +LAPTRELA Q+ G V+ +VGG+ Q L K PHI+VATPG L
Sbjct: 608 ACVLAPTRELAYQISQQFEGLGSAMGVRCVTIVGGLDMMAQSVALAKRPHIVVATPGRL- 666
Query: 1416 LKRIDLAKSIEYLE-SKIKKNRPDNW--LEKAAK--DMDI--IIDDENLIQPKANSRENA 1468
I++LE +K R + L++A + DMD IID I PK R
Sbjct: 667 ---------IDHLENTKGFSLRGLKFLVLDEADRLLDMDFGPIIDKILKIIPK--ERTTY 715
Query: 1469 LMSKALVSKRKELQ 1482
L S + +K +LQ
Sbjct: 716 LFSATMTTKVAKLQ 729
Score = 43.1 bits (100), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ ++ L ++ ++ KK++L +P D ++L+++R+
Sbjct: 859 DYIHRVGRTARAGRSGKSVTLVTQYDVELIQRIETTIGKKMEL--WPTDAEEIALLRERV 916
Query: 1299 DLAKSIEYLESK 1310
D A + E K
Sbjct: 917 DEASRVAINELK 928
>gi|335308097|ref|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Sus
scrofa]
Length = 473
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 139/403 (34%), Positives = 207/403 (51%), Gaps = 74/403 (18%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 82 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 139
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 140 --LETP------------------------------------QRLFALVLTPTRELAFQI 161
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 162 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 221
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 222 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT----------- 262
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV K ++R +K+P ++ K + L + + KD+YL Y
Sbjct: 263 -----KKVQK----LQRAA----LKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 309
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + ++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SI
Sbjct: 310 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 369
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
LLATDVA+RGLDIP ++ V+++ +P S+ YIHR GRTARA
Sbjct: 370 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGG 412
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 152/552 (27%), Positives = 236/552 (42%), Gaps = 169/552 (30%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 82 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 139
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 140 --LETP------------------------------------QRLFALVLTPTRELAFQI 161
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 162 SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRAL 221
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 222 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 251
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+TF+FSAT+T KKV K ++R +K+P +
Sbjct: 252 ------RKTFLFSATMT----------------KKVQK----LQRAA----LKNPVKCAV 281
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
+ K + L + + KD+YL Y + + G
Sbjct: 282 SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG------------------------- 316
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+S++ + C++ ++ +R LL L + +PL
Sbjct: 317 ------------------NSFMIF------------CSTCNNTQRTALLLRNLGFTAIPL 346
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL +L++F+ + SILLATDVA+RGLDIP ++ V+++ +P S+ YIHR GR
Sbjct: 347 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 406
Query: 635 TARANNEGL---TVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKK 691
TARA T I S ++ ++ E+ E+++R+ D +D + +
Sbjct: 407 TARAGGARFPSTTRKAISS------LRYGMELREHGEKKKRSREDTGDNDDTEGAIGVRN 460
Query: 692 K----KLKRKQN 699
K K+K+++
Sbjct: 461 KVAGGKMKKRKG 472
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 148 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 206
Query: 1416 LKRIDLAKSIEYLESKIKKN-RPDNWLEKAAKD----MDIIIDDENLIQPKANSRENALM 1470
I++LE+ N R +L D MD + + +++ R+ L
Sbjct: 207 ---------IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 257
Query: 1471 SKALVSKRKELQ 1482
S + K ++LQ
Sbjct: 258 SATMTKKVQKLQ 269
>gi|357236526|ref|ZP_09123869.1| hypothetical protein STRCR_2065 [Streptococcus criceti HS-6]
gi|356884508|gb|EHI74708.1| hypothetical protein STRCR_2065 [Streptococcus criceti HS-6]
Length = 519
Score = 207 bits (527), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 214/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ E I++A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLAENILQAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I ++AN N + AL++APTRELA
Sbjct: 62 KI------------------------------DTAN---------NVIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKR---RAL 139
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+L + L++DE D M+ G +++ I+ V RQT +FSAT+ ++K
Sbjct: 140 KLNTVETLILDEADEMLNMGFLEDIEAIISHV-----PNERQTLLFSATMPDAIKRI--- 191
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
+K ++D P+ V + K + + + + K EK D+
Sbjct: 192 ---------------GVKFMKD------PEHVKIAAKELTSDMVEQFYVRVKEREKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P ++VF + V LT+ L + +H ++Q +RL+ + F++ N
Sbjct: 231 TRLIDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E YIHR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYIHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLSIIENLTKK 360
Score = 124 bits (310), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 126/262 (48%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ E I++A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLAENILQAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I ++AN N + AL++APTRELA
Sbjct: 62 KI------------------------------DTAN---------NVIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKR---RAL 139
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L + L++DE D M+ G +++ I+ V RQT++ S P + + R+
Sbjct: 140 KLNTVETLILDEADEMLNMGFLEDIEAIISHV-----PNERQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT +
Sbjct: 192 GVKFMKDPEHVKIAAKELTSDM 213
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K + + + + K EK D+ ++ P ++VF + V L
Sbjct: 196 MKDPEHVKIAAKELTSDMVEQFYVRVKEREKFDTMTRLIDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ + F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E YIHR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYIHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWLEKAAKD---MDIIIDDENLIQPKANSRENALMSK 1472
+DL K +K N + + A + M + D E +I N R+ L S
Sbjct: 131 ---LDLIK-----RRALKLNTVETLILDEADEMLNMGFLEDIEAIISHVPNERQTLLFSA 182
Query: 1473 AL 1474
+
Sbjct: 183 TM 184
>gi|225718584|gb|ACO15138.1| Probable ATP-dependent RNA helicase DDX47 [Caligus clemensi]
Length = 470
Score = 207 bits (527), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 228/448 (50%), Gaps = 70/448 (15%)
Query: 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+ + E + A +G+KTP+KIQ +P AL R D++G AETGSGKT AF +P+
Sbjct: 30 CSFSDLGLTEVLCEACESQGWKTPSKIQKEAIPVALTGR-DVIGLAETGSGKTGAFALPV 88
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L + LE P +L+ALIL PTRE
Sbjct: 89 LQAL---LEKP------------------------------------QRLFALILTPTRE 109
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA Q+ GK +K +VGGM Q +L K PHI+VATPGRL + ++ +
Sbjct: 110 LAYQISETFEKLGKSIGIKCGVLVGGMDMMSQALVLGKKPHIIVATPGRLIDHME--NTK 167
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
+L + YL++DE DR++ E+ IL + E R+ +FSAT+T
Sbjct: 168 GFDLRSLKYLIMDEADRILNMDFEIEVDKILSSLPRGEG---RKNMLFSATMT------- 217
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
KKV+K ++R ++++P V+++ K L + + K+
Sbjct: 218 ---------KKVAK----LQRA----SLQNPVRVEVSSKYQTVDKLLQYYLFIPLKYKEM 260
Query: 1068 YLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
YL + I + G + ++F ++ S +L LL L + +PL+ M+Q +RL +L++F+ +
Sbjct: 261 YLVHIINELAGNSFIIFSSTCSGTLKLALLLRNLGFTAIPLNGQMSQNKRLASLNKFKTK 320
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+ SIL+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G + + ++
Sbjct: 321 SRSILIATDVASRGLDIPHVDIVINYDIPTHSKDYIHRVGRTARAGRSGRAITFVCQYDV 380
Query: 1187 PLYIKMFNSLEKKVDLPDFPIDESVLSL 1214
LY ++ + KK+ L +E V+ L
Sbjct: 381 ELYQRIETLIGKKLPLYSSATEEEVMVL 408
Score = 114 bits (285), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 114/245 (46%), Gaps = 57/245 (23%)
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+ + E + A +G+KTP+KIQ +P AL R D++G AETGSGKT AF +P+
Sbjct: 30 CSFSDLGLTEVLCEACESQGWKTPSKIQKEAIPVALTGR-DVIGLAETGSGKTGAFALPV 88
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L + LE P +L+ALIL PTRE
Sbjct: 89 LQAL---LEKP------------------------------------QRLFALILTPTRE 109
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA Q+ GK +K +VGGM Q +L K PHI+VATPGRL + ++ +
Sbjct: 110 LAYQISETFEKLGKSIGIKCGVLVGGMDMMSQALVLGKKPHIIVATPGRLIDHME--NTK 167
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
+L + YL++DE DR++ E+ IL +S PR G KN+L
Sbjct: 168 GFDLRSLKYLIMDEADRILNMDFEIEVDKIL-------SSLPRG----EGR----KNMLF 212
Query: 391 RVTMT 395
TMT
Sbjct: 213 SATMT 217
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKR 559
++++P V+++ K L + + K+ YL + I + G + ++F ++ S +
Sbjct: 227 SLQNPVRVEVSSKYQTVDKLLQYYLFIPLKYKEMYLVHIINELAGNSFIIFSSTCSGTLK 286
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L LL L + +PL+ M+Q +RL +L++F+ ++ SIL+ATDVA+RGLDIP ++ VI+Y
Sbjct: 287 LALLLRNLGFTAIPLNGQMSQNKRLASLNKFKTKSRSILIATDVASRGLDIPHVDIVINY 346
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+P S+ YIHR GRTARA G + +
Sbjct: 347 DIPTHSKDYIHRVGRTARAGRSGRAITFV 375
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
ALIL PTRELA Q+ GK +K +VGGM Q +L K PHI+VATPG L
Sbjct: 101 ALILTPTRELAYQISETFEKLGKSIGIKCGVLVGGMDMMSQALVLGKKPHIIVATPGRLI 160
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ--PKANSRENA 1468
+ K DL +S++YL + D L +MD I+ + ++ P+ R+N
Sbjct: 161 DHMENTKGFDL-RSLKYL----IMDEADRIL-----NMDFEIEVDKILSSLPRGEGRKNM 210
Query: 1469 LMSKALVSKRKELQ 1482
L S + K +LQ
Sbjct: 211 LFSATMTKKVAKLQ 224
>gi|386753803|ref|YP_006227021.1| ATP-dependent RNA helicase [Helicobacter pylori Shi112]
gi|384560061|gb|AFI00528.1| ATP-dependent RNA helicase [Helicobacter pylori Shi112]
Length = 492
Score = 207 bits (527), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 207/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ ++ Q
Sbjct: 206 ---------IKRLADRILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMHLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ K++L + P
Sbjct: 377 DSKIELFEIP 386
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + DR+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADRI 213
Score = 100 bits (250), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 72/124 (58%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ ++ Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMHLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLI 648
+ L+
Sbjct: 358 ITLV 361
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|254565677|ref|XP_002489949.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|238029745|emb|CAY67668.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328350360|emb|CCA36760.1| ATP-dependent RNA helicase [Komagataella pastoris CBS 7435]
Length = 478
Score = 207 bits (527), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 156/497 (31%), Positives = 253/497 (50%), Gaps = 90/497 (18%)
Query: 733 KKLKQKKKKKQ------TYTSANKELLEVDTSNNEDMFVQMAE--WVKFN----IPETII 780
+K+K+K + ++ T T E LE + D V+ E + FN +PE I+
Sbjct: 26 RKIKEKAEAQKIPEPEKTETVGADETLEPKEEDKIDDTVEEPEQKYESFNDFGLVPE-IL 84
Query: 781 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE 840
A + + PT IQ+ +P AL R DI+G A+TGSGKT AF IP
Sbjct: 85 EACEKLKYTKPTPIQAESIPYALKGR-DIIGLAQTGSGKTAAFAIP-------------- 129
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
VL+ L E++ T F + +LAPTRELA Q++ G
Sbjct: 130 --------------VLQSLYEQA---TPF--------FCCVLAPTRELAYQIKETFDSLG 164
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVI 959
++ C+VGGM Q + L + PH++VATPGRL + ++ F L L YL++
Sbjct: 165 SGMGLRSVCIVGGMDMIDQAKDLMRKPHVIVATPGRLMDHLENTKGFSLKAL---KYLIM 221
Query: 960 DETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 1019
DE DR+++ P + +L + + R T++FSAT+T+ ++ K ++
Sbjct: 222 DEADRLLDLEFGPAIDKVLKLI-----PRERSTYLFSATMTNKIE----------KLQRA 266
Query: 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 1079
S DP IK V ++ K +L +S ++ K+++L Y + ++ +
Sbjct: 267 SLVDP----------IK----VSVSSKYSTVDSLIQSLMVVPDGYKNTFLIYLLNKYQNK 312
Query: 1080 TLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+++ F + + +R L ++ S +PLH +NQ QRL L++F+ + +IL+ATDVAA
Sbjct: 313 SIIIFTRTCAHAQRTALLARLMDFSAIPLHGQLNQSQRLGALNKFKARERTILVATDVAA 372
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++ VI++ +P S+ YIHR GRTARA G ++ L+ ++ L +++ + L
Sbjct: 373 RGLDIPMVDVVINFDIPTDSKAYIHRVGRTARAGRSGRSISLVTQYDLELILRVESVLGM 432
Query: 1199 KVDLP-DFPIDESVLSL 1214
K LP D P + +LSL
Sbjct: 433 K--LPKDVPPRDEILSL 447
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 152/546 (27%), Positives = 239/546 (43%), Gaps = 169/546 (30%)
Query: 116 KKLKQKKKKKQ------TYTSANKELLEVDTSNNEDMFVQMAE--WVKFN----IPETII 163
+K+K+K + ++ T T E LE + D V+ E + FN +PE I+
Sbjct: 26 RKIKEKAEAQKIPEPEKTETVGADETLEPKEEDKIDDTVEEPEQKYESFNDFGLVPE-IL 84
Query: 164 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE 223
A + + PT IQ+ +P AL R DI+G A+TGSGKT AF IP
Sbjct: 85 EACEKLKYTKPTPIQAESIPYALKGR-DIIGLAQTGSGKTAAFAIP-------------- 129
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
VL+ L E++ T F + +LAPTRELA Q++ G
Sbjct: 130 --------------VLQSLYEQA---TPF--------FCCVLAPTRELAYQIKETFDSLG 164
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVI 342
++ C+VGGM Q + L + PH++VATPGRL + ++ F L L YL++
Sbjct: 165 SGMGLRSVCIVGGMDMIDQAKDLMRKPHVIVATPGRLMDHLENTKGFSLKAL---KYLIM 221
Query: 343 DETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402
DE DR+++ P + +L + PR+ R
Sbjct: 222 DEADRLLDLEFGPAIDKVLKLI-------PRE--------------------------RS 248
Query: 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
T++FSAT+T+ ++ K ++ S DP IK V ++ K
Sbjct: 249 TYLFSATMTNKIE----------KLQRASLVDP-IK-------------VSVSSKYSTVD 284
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
+L +S ++ K+++L Y + ++ +++ I T+T
Sbjct: 285 SLIQSLMVVPDGYKNTFLIYLLNKYQNKSI---------------------IIFTRT--- 320
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
C H +R L ++ S +PLH +NQ Q
Sbjct: 321 ----CAH---------------------------AQRTALLARLMDFSAIPLHGQLNQSQ 349
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
RL L++F+ + +IL+ATDVAARGLDIP ++ VI++ +P S+ YIHR GRTARA G
Sbjct: 350 RLGALNKFKARERTILVATDVAARGLDIPMVDVVINFDIPTDSKAYIHRVGRTARAGRSG 409
Query: 643 LTVVLI 648
++ L+
Sbjct: 410 RSISLV 415
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ +LAPTRELA Q++ G ++ C+VGGM Q + L + PH++VATPG
Sbjct: 141 FFCCVLAPTRELAYQIKETFDSLGSGMGLRSVCIVGGMDMIDQAKDLMRKPHVIVATPGR 200
Query: 1414 L 1414
L
Sbjct: 201 L 201
>gi|384154754|ref|YP_005537569.1| DEAD/DEAH box helicase [Arcobacter butzleri ED-1]
gi|345468308|dbj|BAK69759.1| DEAD-box ATP dependent DNA helicase [Arcobacter butzleri ED-1]
Length = 516
Score = 207 bits (527), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 209/429 (48%), Gaps = 80/429 (18%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
FN E + +A+ + GFK P+ IQ +P L R DIVG A TG+GKT AFG+PIL I
Sbjct: 6 FNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGR-DIVGQAHTGTGKTAAFGLPILNKIK 64
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
K SG+E A+++ PTRELA+QV
Sbjct: 65 AK-----------SGVE-----------------------------AVVIVPTRELAMQV 84
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ + GK+ + A V GG + +Q++++ ++VATPGR + ++ +
Sbjct: 85 SDELYRFGKFLGINTATVYGGQAYARQIKLIENS-SVIVATPGRFLDLLRGDKISI---- 139
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
K ++++DE D M++ G ++K I T + RQT +FSAT+ ++KN
Sbjct: 140 KPKFVILDEADEMLDMGFLDDIKEIF-----TFLPENRQTLLFSATMPTAIKNL------ 188
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY-Y 1071
+K + +K P+ V LT+ +T++ + E+D L
Sbjct: 189 ---AKTI---------------LKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDALIRL 230
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
F ++P ++++FC + V RL+ L LH M Q+QR + + F+ IL
Sbjct: 231 FDFKNPKKSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEIL 290
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATDVAARGLD+ + HV +YH+P SE Y+HR GRT RA EG+ + ++ P +
Sbjct: 291 IATDVAARGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIV----TPHEFR 346
Query: 1192 MFNSLEKKV 1200
M +EK +
Sbjct: 347 MLQKIEKSI 355
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/500 (26%), Positives = 207/500 (41%), Gaps = 158/500 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
FN E + +A+ + GFK P+ IQ +P L R DIVG A TG+GKT AFG+PIL I
Sbjct: 6 FNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGR-DIVGQAHTGTGKTAAFGLPILNKIK 64
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
K SG+E A+++ PTRELA+QV
Sbjct: 65 AK-----------SGVE-----------------------------AVVIVPTRELAMQV 84
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ + GK+ + A V GG + +Q++++ ++VATPGR + ++ +
Sbjct: 85 SDELYRFGKFLGINTATVYGGQAYARQIKLIENS-SVIVATPGRFLDLLRGDKISI---- 139
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
K ++++DE D M++ G ++K I T
Sbjct: 140 KPKFVILDEADEMLDMGFLDDIKEIF---------------------------------T 166
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
+ RQT +FSAT+ ++KN +K + +K P+ V LT
Sbjct: 167 FLPENRQTLLFSATMPTAIKNL---------AKTI---------------LKEPEFVTLT 202
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
+ +T++ + E+D L L + K+PK
Sbjct: 203 KSDVTNSKITQTFYVVDEKERDDALIR----------------LFDFKNPK--------- 237
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+S I C+ +KD V RL+ L LH
Sbjct: 238 ------KSIIFCRT-KKD-----------------------VDRLSTFLVSQGFMAKALH 267
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M Q+QR + + F+ IL+ATDVAARGLD+ + HV +YH+P SE Y+HR GRT
Sbjct: 268 GDMEQKQREEAIRAFKSSKLEILIATDVAARGLDVNDVTHVFNYHLPFDSESYVHRIGRT 327
Query: 636 ARANNEGLTVVLIESDEIPL 655
RA EG+ + ++ E +
Sbjct: 328 GRAGKEGMAISIVTPHEFRM 347
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1355 DALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+A+++ PTRELA+QV + + GK+ + A V GG + +Q++++ ++VATPG
Sbjct: 70 EAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENS-SVIVATPG 126
>gi|225468923|ref|XP_002273212.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Vitis
vinifera]
Length = 470
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 148/460 (32%), Positives = 232/460 (50%), Gaps = 74/460 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
I E ++ A G+KTP+KIQ+ +P AL KD++G A+TGSGKT AF +PIL ++
Sbjct: 48 LGICEQLVEACENLGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALL 106
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ T L+A +L+PTRELAIQ+
Sbjct: 107 D---------------------------------------TPQVLFACVLSPTRELAIQI 127
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G +K A +VGG+ +Q L K PHI+V TPGRL + L + L
Sbjct: 128 AEQFEALGSGIGLKCAVLVGGVDHTQQAIALAKRPHIVVGTPGRLMD--HLSNTKGFSLR 185
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ YLV+DE DR++ + + +D + ++ + R+T++FSAT+T
Sbjct: 186 TMKYLVLDEADRLLND----DFEKAIDEI-LSVIPRERKTYLFSATMT------------ 228
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
KKV ++LQ +++P +++ K TL + K+ YL Y
Sbjct: 229 ----KKV-------RKLQRAC-LRNPVKIEVASKYSTVDTLKQQYRFVPAKYKECYLVYI 276
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G T +VF + + + L LL L +P+ M+Q +RL L++F+ +IL
Sbjct: 277 LTELSGSTTMVFTRTCDATRLLALLLRNLGLRAIPISGHMSQAKRLGALNKFKAGECNIL 336
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+ E+ YI+
Sbjct: 337 ICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQ 396
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ + KK LP+FP E + L+ +R+ AK I ++ K
Sbjct: 397 IEKLIGKK--LPEFPAQEEEVLLLLERVTEAKRISQMKVK 434
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 140/336 (41%), Gaps = 99/336 (29%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
I E ++ A G+KTP+KIQ+ +P AL KD++G A+TGSGKT AF +PIL ++
Sbjct: 48 LGICEQLVEACENLGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALL 106
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ T L+A +L+PTRELAIQ+
Sbjct: 107 D---------------------------------------TPQVLFACVLSPTRELAIQI 127
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G +K A +VGG+ +Q L K PHI+V TPGRL + L + L
Sbjct: 128 AEQFEALGSGIGLKCAVLVGGVDHTQQAIALAKRPHIVVGTPGRLMD--HLSNTKGFSLR 185
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ YLV+DE DR++ + IL + PR+
Sbjct: 186 TMKYLVLDEADRLLNDDFEKAIDEILSVI-------PRE--------------------- 217
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+T++FSAT+T KKV ++LQ +++P +++
Sbjct: 218 -----RKTYLFSATMT----------------KKV-------RKLQRAC-LRNPVKIEVA 248
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
K TL + K+ YL Y + + G T
Sbjct: 249 SKYSTVDTLKQQYRFVPAKYKECYLVYILTELSGST 284
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 6/180 (3%)
Query: 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 534
E+ +YL+ + R L +++P +++ K TL + K+
Sbjct: 217 ERKTYLFSATMTKKVRKLQRAC-----LRNPVKIEVASKYSTVDTLKQQYRFVPAKYKEC 271
Query: 535 YLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 593
YL Y + + G T +VF + + + L LL L +P+ M+Q +RL L++F+
Sbjct: 272 YLVYILTELSGSTTMVFTRTCDATRLLALLLRNLGLRAIPISGHMSQAKRLGALNKFKAG 331
Query: 594 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+IL+ TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+ E+
Sbjct: 332 ECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYEL 391
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A +L+PTRELAIQ+ G +K A +VGG+ +Q L K PHI+V TPG L
Sbjct: 114 ACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQAIALAKRPHIVVGTPGRL 172
Score = 45.8 bits (107), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G+ + L+ E+ YI++ + KK LP+FP E + L+ +R+
Sbjct: 365 DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKK--LPEFPAQEEEVLLLLERV 422
Query: 1299 DLAKSIEYLESK 1310
AK I ++ K
Sbjct: 423 TEAKRISQMKVK 434
>gi|409195488|ref|ZP_11224151.1| DEAD/DEAH box helicase-like protein [Marinilabilia salmonicolor JCM
21150]
Length = 427
Score = 207 bits (526), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 204/416 (49%), Gaps = 62/416 (14%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E I+R+L +KG+ PT IQ +P LL KD++G A+TG+GKT AF IPIL I
Sbjct: 10 EPILRSLKEKGYTQPTPIQEQSIP-ILLGGKDLLGCAQTGTGKTAAFSIPILQNIY---- 64
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
L + N + +K R L ALI+ PTRELAIQ+ +
Sbjct: 65 ----------------------LNSSADNQSRRRRKPR--LKALIVTPTRELAIQIGESL 100
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
D GKYT ++ + GG+ Q + L + ILVATPGRL + I G L E I Y
Sbjct: 101 TDYGKYTGIRNIVIFGGVKQGAQTQSLQRGTDILVATPGRLLDLISQGFISLRE---IEY 157
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
V+DE DRM++ G +++ I++ + RQ+ FSAT+
Sbjct: 158 FVLDEADRMLDMGFIHDVRKIINLLPAK-----RQSLFFSATMA---------------- 196
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
P I +L + +P V +T K + + +S K L + + ++
Sbjct: 197 -------PEIVKLSGKILGGNPGKVTITPKQNTAEKVDQSIYYVDKKSKSRLLVHLMEEN 249
Query: 1077 P-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
P TLVF + ++ ++L + L +H + +Q R K L F+ S+L+ATD
Sbjct: 250 PEDSTLVFSRTKHGADKIVKILKKAGINALAIHGNKSQGARQKALGDFKSGEASVLVATD 309
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+AARG+D+ G+ VI+Y +P E Y+HR GRT RAN EG L + +E P Y+K
Sbjct: 310 IAARGIDVSGLGRVINYDLPNIPETYVHRIGRTGRANAEGTALSFCDVEEKP-YLK 364
Score = 125 bits (314), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E I+R+L +KG+ PT IQ +P LL KD++G A+TG+GKT AF IPIL I
Sbjct: 10 EPILRSLKEKGYTQPTPIQEQSIP-ILLGGKDLLGCAQTGTGKTAAFSIPILQNIY---- 64
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
L + N + +K R L ALI+ PTRELAIQ+ +
Sbjct: 65 ----------------------LNSSADNQSRRRRKPR--LKALIVTPTRELAIQIGESL 100
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
D GKYT ++ + GG+ Q + L + ILVATPGRL + I G L E I Y
Sbjct: 101 TDYGKYTGIRNIVIFGGVKQGAQTQSLQRGTDILVATPGRLLDLISQGFISLRE---IEY 157
Query: 340 LVIDETDRMIESGHFPELKNILD 362
V+DE DRM++ G +++ I++
Sbjct: 158 FVLDEADRMLDMGFIHDVRKIIN 180
Score = 90.1 bits (222), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQ 562
+P V +T K + + +S K L + + ++P TLVF + ++ +
Sbjct: 210 NPGKVTITPKQNTAEKVDQSIYYVDKKSKSRLLVHLMEENPEDSTLVFSRTKHGADKIVK 269
Query: 563 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 622
+L + L +H + +Q R K L F+ S+L+ATD+AARG+D+ G+ VI+Y +P
Sbjct: 270 ILKKAGINALAIHGNKSQGARQKALGDFKSGEASVLVATDIAARGIDVSGLGRVINYDLP 329
Query: 623 RTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
E Y+HR GRT RAN EG + + +E P
Sbjct: 330 NIPETYVHRIGRTGRANAEGTALSFCDVEEKP 361
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELAIQ+ + D GKYT ++ + GG+ Q + L + ILVATPG L
Sbjct: 83 ALIVTPTRELAIQIGESLTDYGKYTGIRNIVIFGGVKQGAQTQSLQRGTDILVATPGRL 141
>gi|195621064|gb|ACG32362.1| ATP-dependent RNA helicase DDX47 [Zea mays]
Length = 455
Score = 207 bits (526), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 145/466 (31%), Positives = 233/466 (50%), Gaps = 81/466 (17%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
Q + + + I ++ A G+K PT+IQ+ +P AL KD++ A+TGSGKT AF +
Sbjct: 22 QASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQG-KDLIALAQTGSGKTGAFAL 80
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
PIL +E+L + E + +A +L+PT
Sbjct: 81 PIL------------------------QELLSNRQAEQS------------FFACVLSPT 104
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
RELAIQ+ G ++ + +VGG+ +Q+ + K PHI+V TPGRL +
Sbjct: 105 RELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKRPHIVVGTPGRLLD------ 158
Query: 946 FHLTE-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000
HLTE L KI YLV+DE D+++ E + LD + ++E + R+TF+FSAT+T
Sbjct: 159 -HLTETKGFSLKKIKYLVLDEADKLLNV----EFEKSLDDI-LSEMPKDRRTFLFSATMT 212
Query: 1001 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 1060
KKV+K LQ +++P V+++ K +L +
Sbjct: 213 ----------------KKVNK-------LQRAC-LRNPAKVEVSSKYSTVDSLKQEFYFV 248
Query: 1061 KHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
D+KD YL + + + ++F + S + L +L L + + M+Q +RL
Sbjct: 249 PADDKDCYLLHVLNERLESMIMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGA 308
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
L+RF+ ++ +IL+ TDVA+RGLDI G++ VI+Y +P S+ Y+HR GRTARA G +
Sbjct: 309 LNRFKAKDCNILICTDVASRGLDIQGVDMVINYDIPINSKDYVHRVGRTARAGRSGYAVS 368
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
L+ E ++ + L KK+D +D + ++K I AK I
Sbjct: 369 LVNQYEAQWFVLIEQLLGKKID--QCKVDRDEVLILKGPISDAKRI 412
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 160/601 (26%), Positives = 258/601 (42%), Gaps = 180/601 (29%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
Q + + + I ++ A G+K PT+IQ+ +P AL KD++ A+TGSGKT AF +
Sbjct: 22 QASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQG-KDLIALAQTGSGKTGAFAL 80
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
PIL +E+L + E + +A +L+PT
Sbjct: 81 PIL------------------------QELLSNRQAEQS------------FFACVLSPT 104
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
RELAIQ+ G ++ + +VGG+ +Q+ + K PHI+V TPGRL +
Sbjct: 105 RELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKRPHIVVGTPGRLLD------ 158
Query: 329 FHLTE-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
HLTE L KI YLV+DE D+++ N+
Sbjct: 159 -HLTETKGFSLKKIKYLVLDEADKLL---------NV----------------------- 185
Query: 384 ELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL 443
E + LD + ++E + R+TF+FSAT+T KKV+K LQ
Sbjct: 186 EFEKSLDDI-LSEMPKDRRTFLFSATMT----------------KKVNK-------LQRA 221
Query: 444 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
+++P V+++ K +L + D+KD YL +
Sbjct: 222 C-LRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHV-------------------- 260
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
L E++ ES I+ +F + S + L +
Sbjct: 261 ------LNERL-------ESMIM----------------------IFVRTCESTRLLALM 285
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
L L + + M+Q +RL L+RF+ ++ +IL+ TDVA+RGLDI G++ VI+Y +P
Sbjct: 286 LRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILICTDVASRGLDIQGVDMVINYDIPI 345
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDI 683
S+ Y+HR GRTARA G V L+ E F L E+ ++ ++ + D+++ +
Sbjct: 346 NSKDYVHRVGRTARAGRSGYAVSLVNQYEAQW---FVLIEQLLGKKIDQCKVDRDEVLIL 402
Query: 684 NVTVSSKKK----KLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKK 739
+S K+ KLK + N D D EE++ HS++ K K
Sbjct: 403 KGPISDAKRIALTKLKDSGGHKK------RRNVGDDD------EEVEDHSSHSRRPKSLK 450
Query: 740 K 740
+
Sbjct: 451 R 451
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 1344 IFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
+ +R S+ A +L+PTRELAIQ+ G ++ + +VGG+ +Q+ + K
Sbjct: 86 LLSNRQAEQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKR 145
Query: 1404 PHILVATPGAL 1414
PHI+V TPG L
Sbjct: 146 PHIVVGTPGRL 156
>gi|326430346|gb|EGD75916.1| ATP-dependent RNA helicase RhlE [Salpingoeca sp. ATCC 50818]
Length = 2578
Score = 207 bits (526), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 219/441 (49%), Gaps = 83/441 (18%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+ E + +A G++ PT +Q +P AL KDIVG A+TGSGKT AF +P++ ++N
Sbjct: 2160 GLEEVLCQACEDVGYRRPTPVQEAAIPPALEG-KDIVGIAKTGSGKTAAFALPVMHSLIN 2218
Query: 834 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
P E + +AL++APTRELA Q++
Sbjct: 2219 A--RPRER----------------------------------RFHALVMAPTRELAQQIE 2242
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
G +K A +VGG+S ++Q L++ PH+L+ATPGR+ L H T +K
Sbjct: 2243 GEFKALGATIGLKTALLVGGLSLQQQQDRLSQNPHVLIATPGRI-----LHHLERTNGFK 2297
Query: 954 IN---YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLK 1010
+N +L++DE DRM+ PE + +D++ + + R F+FSAT +K+ ++
Sbjct: 2298 LNNVKFLILDEADRMLT----PEFEREIDQL-LGHIPKRRTNFLFSATSNDKVKHLMHAV 2352
Query: 1011 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 1070
+++P + + K+ TL + + K++YL
Sbjct: 2353 ------------------------LRNPVHIKIKHKVKTVDTLDQHCVFLPLQFKETYLV 2388
Query: 1071 YFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+F+ LQ ++FC + + +L +L L LH +M+Q +R+ L RF+
Sbjct: 2389 WFLQRQGLQADSSVIIFCETKRATMKLVLMLRKLGLRATCLHGNMSQEKRIGALARFKTH 2448
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+++L+ T+V ARGLDI G+E VI+Y +P+TS++Y+HR GRTARA G + + ++
Sbjct: 2449 KDNVLVCTNVGARGLDIQGVELVINYDLPKTSDVYLHRVGRTARAGRSGRAVTFVTQYDV 2508
Query: 1187 PLYIKMFNSLEKKVDLPDFPI 1207
P F +E V L D P+
Sbjct: 2509 P----YFKEIEAGVGL-DLPV 2524
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 133/501 (26%), Positives = 215/501 (42%), Gaps = 154/501 (30%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+ E + +A G++ PT +Q +P AL KDIVG A+TGSGKT AF +P++ ++N
Sbjct: 2160 GLEEVLCQACEDVGYRRPTPVQEAAIPPALEG-KDIVGIAKTGSGKTAAFALPVMHSLIN 2218
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
P E + +AL++APTRELA Q++
Sbjct: 2219 A--RPRER----------------------------------RFHALVMAPTRELAQQIE 2242
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
G +K A +VGG+S ++Q L++ PH+L+ATPGR+ L H T +K
Sbjct: 2243 GEFKALGATIGLKTALLVGGLSLQQQQDRLSQNPHVLIATPGRI-----LHHLERTNGFK 2297
Query: 337 IN---YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
+N +L++DE DRM+ PE + +D++ GH P
Sbjct: 2298 LNNVKFLILDEADRMLT----PEFEREIDQLL--------------GHIP---------- 2329
Query: 394 MTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVD 453
+ R F+FSAT +K+ ++ +++P +
Sbjct: 2330 -----KRRTNFLFSATSNDKVKHLMHAV------------------------LRNPVHIK 2360
Query: 454 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEK 513
+ K+ TL + + K++YL +F LQ G
Sbjct: 2361 IKHKVKTVDTLDQHCVFLPLQFKETYLVWF-LQRQG------------------------ 2395
Query: 514 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 573
LQ ++FC + + +L +L L
Sbjct: 2396 ---------------------------LQADSSVIIFCETKRATMKLVLMLRKLGLRATC 2428
Query: 574 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 633
LH +M+Q +R+ L RF+ +++L+ T+V ARGLDI G+E VI+Y +P+TS++Y+HR G
Sbjct: 2429 LHGNMSQEKRIGALARFKTHKDNVLVCTNVGARGLDIQGVELVINYDLPKTSDVYLHRVG 2488
Query: 634 RTARANNEGLTVVLIESDEIP 654
RTARA G V + ++P
Sbjct: 2489 RTARAGRSGRAVTFVTQYDVP 2509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+ AL++APTRELA Q++ G +K A +VGG+S ++Q L++ PH+L+ATPG
Sbjct: 2226 FHALVMAPTRELAQQIEGEFKALGATIGLKTALLVGGLSLQQQQDRLSQNPHVLIATPG 2284
>gi|308502005|ref|XP_003113187.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
gi|308265488|gb|EFP09441.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
Length = 506
Score = 207 bits (526), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 219/446 (49%), Gaps = 86/446 (19%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + + + A + G+ P+KIQ +P AL KD++G AETGSGKT AF IP+L
Sbjct: 56 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQG-KDVIGLAETGSGKTGAFAIPVLQ 114
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ L++P + L+L PTRELA
Sbjct: 115 SL---LDHP------------------------------------QAFFCLVLTPTRELA 135
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 948
Q+ G + A +VGG+ Q L + PHI+VATPGRL + ++ F+L
Sbjct: 136 FQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNL 195
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L +L++DE DR++ EL IL + + R+T++FSAT+T
Sbjct: 196 KAL---KFLIMDEADRILNMDFEVELDKILKVI-----PKERRTYLFSATMT-------- 239
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
KKVSK + + +++ P V ++ + L + I + K++Y
Sbjct: 240 --------KKVSKLERA--------SLRDPARVSVSTRYKTVDNLKQHYIFIPNKYKETY 283
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ------------RQ 1115
L Y + +H G + +VFC + ++ ++ +L L +PLH M+Q +
Sbjct: 284 LVYLLNEHAGNSAIVFCATCATAMQIAVMLRQLGMQAVPLHGQMSQVRFERPLQVGSLEK 343
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
RL +L++F+ + IL+ TDVAARGLDIP ++ VI+Y +P S+ Y+HR GRTARA G
Sbjct: 344 RLGSLNKFKSKARDILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSG 403
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVD 1201
L + ++ ++ Y K+ +L KK+D
Sbjct: 404 LAITVVTQYDVEGYQKIEANLGKKLD 429
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 129/514 (25%), Positives = 211/514 (41%), Gaps = 168/514 (32%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + + + A + G+ P+KIQ +P AL KD++G AETGSGKT AF IP+L
Sbjct: 56 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQG-KDVIGLAETGSGKTGAFAIPVLQ 114
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ L++P + L+L PTRELA
Sbjct: 115 SL---LDHP------------------------------------QAFFCLVLTPTRELA 135
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHL 331
Q+ G + A +VGG+ Q L + PHI+VATPGRL + ++ F+L
Sbjct: 136 FQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNL 195
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
L +L++DE DR++ EL IL + P++
Sbjct: 196 KAL---KFLIMDEADRILNMDFEVELDKILKVI-------PKE----------------- 228
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
R+T++FSAT+T KKVSK + + +++ P
Sbjct: 229 ---------RRTYLFSATMT----------------KKVSKLERA--------SLRDPAR 255
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
V ++ + L + I + K++YL Y + +H G +
Sbjct: 256 VSVSTRYKTVDNLKQHYIFIPNKYKETYLVYLLNEHAGNS-------------------- 295
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+ + C + ++ ++ +L L
Sbjct: 296 -----------AIVFCA------------------------TCATAMQIAVMLRQLGMQA 320
Query: 572 LPLHASMNQ------------RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
+PLH M+Q +RL +L++F+ + IL+ TDVAARGLDIP ++ VI+Y
Sbjct: 321 VPLHGQMSQVRFERPLQVGSLEKRLGSLNKFKSKARDILVCTDVAARGLDIPHVDMVINY 380
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P S+ Y+HR GRTARA GL + ++ ++
Sbjct: 381 DMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDV 414
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ L+L PTRELA Q+ G + A +VGG+ Q L + PHI+VATPG
Sbjct: 122 AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPG 181
Query: 1413 AL 1414
L
Sbjct: 182 RL 183
>gi|374337605|ref|YP_005094310.1| cold-shock DEAD-box protein A [Streptococcus macedonicus ACA-DC 198]
gi|372283710|emb|CCF01907.1| Cold-shock DEAD-box protein A [Streptococcus macedonicus ACA-DC 198]
Length = 526
Score = 206 bits (525), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 140/432 (32%), Positives = 214/432 (49%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
I D N RN + AL++APTREL
Sbjct: 61 DKI----------DTN-----------------------------RNLVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 DH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPEA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K+P+ V + K T + + I K +K D+
Sbjct: 188 -----------------IKRI-GVKFMKNPEHVKVAAKELTTDLIDQYYIRVKEQDKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVDPPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 IDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVTPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 -YLSIIENLTKK 360
Score = 126 bits (317), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 126/263 (47%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
I D N RN + AL++APTREL
Sbjct: 61 DKI----------DTN-----------------------------RNLVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S PE + R
Sbjct: 142 DH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPE---AIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + P V + LT L
Sbjct: 191 IGVKFMKNPEHVKVAAKELTTDL 213
Score = 94.0 bits (232), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K+P+ V + K T + + I K +K D+ + P ++VF + V L
Sbjct: 196 MKNPEHVKVAAKELTTDLIDQYYIRVKEQDKFDTMTRLMDVDPPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVTPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 17/132 (12%)
Query: 1347 SRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 1406
+RNL AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI
Sbjct: 66 NRNL---VQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHI 122
Query: 1407 LVATPGALSLKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKA 1462
+V TPG L +DL K ++++E+ I + D L +M + D E +I
Sbjct: 123 VVGTPGRL----LDLIKRKALKLDHVETLI-LDEADEML-----NMGFLEDIEAIISRVP 172
Query: 1463 NSRENALMSKAL 1474
+R+ L S +
Sbjct: 173 ETRQTLLFSATM 184
>gi|441477761|dbj|BAM75193.1| vasa-like gene-2, partial [Pinctada fucata]
Length = 451
Score = 206 bits (525), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 146/459 (31%), Positives = 235/459 (51%), Gaps = 76/459 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A + +K+P+KIQ +P AL DI+G AETGSGKT AF IPIL +
Sbjct: 27 LGVVDVLCEACERLKWKSPSKIQREAIPVALQG-SDIIGLAETGSGKTGAFAIPILQKL- 84
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
L++P +LYALIL PTRELA Q+
Sbjct: 85 --LDSP------------------------------------QRLYALILTPTRELAFQI 106
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G VK A VVGG+ Q +L K PHI++ATPGRL + ++ F+L L
Sbjct: 107 SEQFEALGSAIGVKCAVVVGGIDMMSQSLMLAKKPHIIIATPGRLIDHLENTKGFNLRAL 166
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+LV+DE DR++ E+ IL + + R T+++SAT+T
Sbjct: 167 ---KFLVMDEADRILNMDFEQEVDKILKVI-----PRERSTYLYSATMT----------- 207
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
KKV+K ++R ++++P V+++ K L + + KD YL
Sbjct: 208 -----KKVAK----LQRA----SLQNPVKVEVSSKYQTVDKLQQYYLFVPAKFKDVYLVS 254
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + G + +VF ++ ++ +R +L L + +PLH M+Q +RL +L++F+ ++ SI
Sbjct: 255 VLNELAGNSFMVFTSTCANTQRTALMLRNLGLTAIPLHGQMSQSKRLGSLNKFKSKSRSI 314
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G + + ++ LY
Sbjct: 315 LIATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELYQ 374
Query: 1191 KMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229
++ + + KK LP + +E + + +R+ A+ +E
Sbjct: 375 RIEHLIGKK--LPLYKTEEQEVMQLMERVTEAQRYAKME 411
Score = 107 bits (268), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 106/184 (57%), Gaps = 10/184 (5%)
Query: 475 EKDSYLYYFILQHPGRTLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 532
E+ +YLY T+ +++ L ++++P V+++ K L + + K
Sbjct: 196 ERSTYLY-------SATMTKKVAKLQRASLQNPVKVEVSSKYQTVDKLQQYYLFVPAKFK 248
Query: 533 DSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 591
D YL + + G + +VF ++ ++ +R +L L + +PLH M+Q +RL +L++F+
Sbjct: 249 DVYLVSVLNELAGNSFMVFTSTCANTQRTALMLRNLGLTAIPLHGQMSQSKRLGSLNKFK 308
Query: 592 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651
++ SIL+ATDVA+RGLDIP ++ VI++ +P S+ YIHR GRTARA G + +
Sbjct: 309 SKSRSILIATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQY 368
Query: 652 EIPL 655
++ L
Sbjct: 369 DVEL 372
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 100/207 (48%), Gaps = 44/207 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A + +K+P+KIQ +P AL DI+G AETGSGKT AF IPIL +
Sbjct: 27 LGVVDVLCEACERLKWKSPSKIQREAIPVALQG-SDIIGLAETGSGKTGAFAIPILQKL- 84
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
L++P +LYALIL PTRELA Q+
Sbjct: 85 --LDSP------------------------------------QRLYALILTPTRELAFQI 106
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G VK A VVGG+ Q +L K PHI++ATPGRL + ++ F+L L
Sbjct: 107 SEQFEALGSAIGVKCAVVVGGIDMMSQSLMLAKKPHIIIATPGRLIDHLENTKGFNLRAL 166
Query: 335 YKINYLVIDETDRMIESGHFPELKNIL 361
+LV+DE DR++ E+ IL
Sbjct: 167 ---KFLVMDEADRILNMDFEQEVDKIL 190
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA Q+ G VK A VVGG+ Q +L K PHI++ATPG L
Sbjct: 93 ALILTPTRELAFQISEQFEALGSAIGVKCAVVVGGIDMMSQSLMLAKKPHIIIATPGRL 151
>gi|157736313|ref|YP_001488996.1| DEAD/DEAH box helicase [Arcobacter butzleri RM4018]
gi|157698167|gb|ABV66327.1| ATP-dependent RNA helicase, DEAD box family [Arcobacter butzleri
RM4018]
Length = 516
Score = 206 bits (525), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 209/429 (48%), Gaps = 80/429 (18%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
FN E + +A+ + GFK P+ IQ +P L R DIVG A TG+GKT AFG+PIL I
Sbjct: 6 FNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGR-DIVGQAHTGTGKTAAFGLPILNKIK 64
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
K SG+E A+++ PTRELA+QV
Sbjct: 65 AK-----------SGVE-----------------------------AVVIVPTRELAMQV 84
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ + GK+ + A V GG + +Q++++ ++VATPGR + ++ +
Sbjct: 85 SDELYRFGKFLGINTATVYGGQAYARQIKLIENS-SVIVATPGRFLDLLRGDKISI---- 139
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
K ++++DE D M++ G ++K I T + RQT +FSAT+ ++KN
Sbjct: 140 KPKFVILDEADEMLDMGFLDDIKEIF-----TFLPENRQTLLFSATMPTAIKNL------ 188
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY-Y 1071
+K + +K P+ V LT+ +T++ + E+D L
Sbjct: 189 ---AKTI---------------LKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDALIRL 230
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
F ++P ++++FC + V RL+ L LH M Q+QR + + F+ IL
Sbjct: 231 FDFKNPKKSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEIL 290
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATDVAARGLD+ + HV +YH+P SE Y+HR GRT RA EG+ + ++ P +
Sbjct: 291 IATDVAARGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIV----TPHEFR 346
Query: 1192 MFNSLEKKV 1200
M +EK +
Sbjct: 347 MLQKIEKSI 355
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 1/155 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY-YFILQHPGRTLVFCNSISSVKRL 560
+K P+ V LT+ +T++ + E+D L F ++P ++++FC + V RL
Sbjct: 193 LKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDALIRLFDFKNPKKSIIFCRTKKDVDRL 252
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L LH M Q+QR + + F+ IL+ATDVAARGLD+ + HV +YH
Sbjct: 253 STFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAARGLDVNDVTHVFNYH 312
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+P SE Y+HR GRT RA EG+ + ++ E +
Sbjct: 313 LPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRM 347
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 114/234 (48%), Gaps = 52/234 (22%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
FN E + +A+ + GFK P+ IQ +P L R DIVG A TG+GKT AFG+PIL I
Sbjct: 6 FNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGR-DIVGQAHTGTGKTAAFGLPILNKIK 64
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
K SG+E A+++ PTRELA+QV
Sbjct: 65 AK-----------SGVE-----------------------------AVVIVPTRELAMQV 84
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ + GK+ + A V GG + +Q++++ ++VATPGR + ++ +
Sbjct: 85 SDELYRFGKFLGINTATVYGGQAYARQIKLIENS-SVIVATPGRFLDLLRGDKISI---- 139
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNI 388
K ++++DE D M++ G ++K I T + RQT++ S P +KN+
Sbjct: 140 KPKFVILDEADEMLDMGFLDDIKEIF-----TFLPENRQTLLFSATMPTAIKNL 188
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1355 DALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+A+++ PTRELA+QV + + GK+ + A V GG + +Q++++ ++VATPG
Sbjct: 70 EAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENS-SVIVATPG 126
>gi|384170944|ref|YP_005552321.1| DEAD-box ATP dependent DNA helicase [Arcobacter sp. L]
gi|345470554|dbj|BAK72004.1| DEAD-box ATP dependent DNA helicase [Arcobacter sp. L]
Length = 511
Score = 206 bits (525), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 134/429 (31%), Positives = 212/429 (49%), Gaps = 80/429 (18%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
FN E + +A+ + GFK P+ IQ MP +L KDIVG A TG+GKT AFG+PIL
Sbjct: 6 FNFKEQLQKAIEEAGFKEPSPIQEQAMP-FILNGKDIVGQAHTGTGKTAAFGLPIL---- 60
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N+L+ SG+E A+++ PTRELA+QV
Sbjct: 61 NRLKGK-------SGVE-----------------------------AVVIVPTRELAMQV 84
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ + GK+ + A V GG + +Q++++ I+VATPGR + ++ +
Sbjct: 85 SDELYRFGKFLGINTATVYGGQAYARQIKLIENA-SIIVATPGRFLDLLRGEKIDI---- 139
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
K +++++DE D M++ G ++K I T + RQT +FSAT+ ++KN
Sbjct: 140 KPDFVILDEADEMLDMGFLDDIKEIF-----TFLPKERQTLLFSATMPVAIKN------- 187
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY-Y 1071
+ +LN P+ V LT+ +T++ + E+D L
Sbjct: 188 ---------------LAKTILN--EPEFVTLTKSDVTNAKITQTFYVVDERERDDALIRL 230
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ ++P ++++FC + V RL+ L LH M QRQR + + F+ IL
Sbjct: 231 YDFKNPKKSIIFCRTKKEVDRLSTFLVSQGFMAKGLHGDMEQRQREEAIRAFKTSKLEIL 290
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATDVAARGLD+ + HV +YH+P SE Y+HR GRT RA EG+ + ++ P +
Sbjct: 291 IATDVAARGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGVAISIV----TPHEFR 346
Query: 1192 MFNSLEKKV 1200
M +EK +
Sbjct: 347 MLQKIEKNI 355
Score = 111 bits (277), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 52/234 (22%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
FN E + +A+ + GFK P+ IQ MP +L KDIVG A TG+GKT AFG+PIL
Sbjct: 6 FNFKEQLQKAIEEAGFKEPSPIQEQAMP-FILNGKDIVGQAHTGTGKTAAFGLPIL---- 60
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N+L+ SG+E A+++ PTRELA+QV
Sbjct: 61 NRLKGK-------SGVE-----------------------------AVVIVPTRELAMQV 84
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ + GK+ + A V GG + +Q++++ I+VATPGR + ++ +
Sbjct: 85 SDELYRFGKFLGINTATVYGGQAYARQIKLIENA-SIIVATPGRFLDLLRGEKIDI---- 139
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNI 388
K +++++DE D M++ G ++K I T + RQT++ S P +KN+
Sbjct: 140 KPDFVILDEADEMLDMGFLDDIKEIF-----TFLPKERQTLLFSATMPVAIKNL 188
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLY-YFILQHPGRTLVFCNSISSVKRLTQL 563
P+ V LT+ +T++ + E+D L + ++P ++++FC + V RL+
Sbjct: 196 PEFVTLTKSDVTNAKITQTFYVVDERERDDALIRLYDFKNPKKSIIFCRTKKEVDRLSTF 255
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
L LH M QRQR + + F+ IL+ATDVAARGLD+ + HV +YH+P
Sbjct: 256 LVSQGFMAKGLHGDMEQRQREEAIRAFKTSKLEILIATDVAARGLDVNDVTHVFNYHLPF 315
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENN 667
SE Y+HR GRT RA EG+ + ++ E + LQ+ E N
Sbjct: 316 DSESYVHRIGRTGRAGKEGVAISIVTPHEFRM-----LQKIEKN 354
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1355 DALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+A+++ PTRELA+QV + + GK+ + A V GG + +Q++++ I+VATPG
Sbjct: 70 EAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENA-SIIVATPG 126
>gi|125587400|gb|EAZ28064.1| hypothetical protein OsJ_12029 [Oryza sativa Japonica Group]
Length = 472
Score = 206 bits (525), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 145/457 (31%), Positives = 230/457 (50%), Gaps = 83/457 (18%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+PE ++ A G+K PT+IQ+ +P AL R D++G +TGSGKT AFG+PI+ ++ K
Sbjct: 49 VPE-LVAACDAMGWKEPTRIQAEAIPHALEGR-DLIGLGQTGSGKTGAFGLPIIQALL-K 105
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+ P L+A +L+PTRELA Q+
Sbjct: 106 QDKP------------------------------------QALFACVLSPTRELAFQIGQ 129
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---- 950
G + +VGG+ +Q L K PHI+V TPGRL + HLT+
Sbjct: 130 QFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRLLD-------HLTDTKGF 182
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L K+ YLV+DE D+++ L +IL+ + + R+TF+FSAT+T+
Sbjct: 183 SLNKLKYLVLDEADKLLNVEFQKALDDILNVI-----PKERRTFLFSATMTN-------- 229
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
KVSK LQ +++P V++ K TL + D KD +L
Sbjct: 230 --------KVSK-------LQRAC-LRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFL 273
Query: 1070 YYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ + + PG ++F + S + L L L+ + + M+Q +RL L+RF+ ++
Sbjct: 274 VHVLNELPGSMIMIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDC 333
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+IL+ TDVA+RGLDI G++ VI+Y +P S+ Y+HR GRTARA N G + L+ E +
Sbjct: 334 NILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYE-AM 392
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
+ KM L ++PD +D + + ++++RI +K I
Sbjct: 393 WFKMIEKL-LGYEIPDRKVDNAEIMILRERISDSKRI 428
Score = 164 bits (414), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 138/500 (27%), Positives = 211/500 (42%), Gaps = 163/500 (32%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+PE ++ A G+K PT+IQ+ +P AL R D++G +TGSGKT AFG+PI+ ++ K
Sbjct: 49 VPE-LVAACDAMGWKEPTRIQAEAIPHALEGR-DLIGLGQTGSGKTGAFGLPIIQALL-K 105
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+ P L+A +L+PTRELA Q+
Sbjct: 106 QDKP------------------------------------QALFACVLSPTRELAFQIGQ 129
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---- 333
G + +VGG+ +Q L K PHI+V TPGRL + HLT+
Sbjct: 130 QFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRLLD-------HLTDTKGF 182
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L K+ YLV+DE D+++ L +IL+ + P++
Sbjct: 183 SLNKLKYLVLDEADKLLNVEFQKALDDILNVI-------PKE------------------ 217
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+TF+FSAT+T+ KVSK LQ +++P V
Sbjct: 218 --------RRTFLFSATMTN----------------KVSK-------LQRAC-LRNPVKV 245
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
++ K TL + D KD +L + + + PG
Sbjct: 246 EVASKYSTVDTLRQEFYFVPADYKDCFLVHVLNELPG----------------------- 282
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
S + F+ + S + L L L+ +
Sbjct: 283 ---------------------SMIMIFV-----------RTCESTRLLALTLRNLRFKAI 310
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
+ M+Q +RL L+RF+ ++ +IL+ TDVA+RGLDI G++ VI+Y +P S+ Y+HR
Sbjct: 311 SISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRV 370
Query: 633 GRTARANNEGLTVVLIESDE 652
GRTARA N G V L+ E
Sbjct: 371 GRTARAGNTGYAVSLVNQYE 390
Score = 48.1 bits (113), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A +L+PTRELA Q+ G + +VGG+ +Q L K PHI+V TPG L
Sbjct: 114 ACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRL 172
Score = 42.0 bits (97), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA N G + L+ E ++ KM L ++PD +D + + ++++RI
Sbjct: 365 DYVHRVGRTARAGNTGYAVSLVNQYE-AMWFKMIEKL-LGYEIPDRKVDNAEIMILRERI 422
Query: 1299 DLAKSI 1304
+K I
Sbjct: 423 SDSKRI 428
>gi|357637041|ref|ZP_09134916.1| DEAD/DEAH box helicase [Streptococcus macacae NCTC 11558]
gi|357585495|gb|EHJ52698.1| DEAD/DEAH box helicase [Streptococcus macacae NCTC 11558]
Length = 518
Score = 206 bits (525), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ E I+ A+ + GF P+ IQ + +P AL R D++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLAEDILSAVEKAGFVEPSPIQELTIPLALEGR-DVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ T +K+ AL++APTREL
Sbjct: 61 ----NKID-----------------------------------VTNDKVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ +KV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGRGKKIKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ V + RQT +FSAT+ ++K
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISHV-----PESRQTLLFSATMPDAIKRI-- 191
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
+K ++D P+ V + K T + + + K +EK D+
Sbjct: 192 ----------------GVKFMKD------PEHVKIAAKELTTDLVDQYYVRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLIDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ V +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTQVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 -YLQIIENLTKK 360
Score = 123 bits (309), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 127/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ E I+ A+ + GF P+ IQ + +P AL R D++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLAEDILSAVEKAGFVEPSPIQELTIPLALEGR-DVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ T +K+ AL++APTREL
Sbjct: 61 ----NKID-----------------------------------VTNDKVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ +KV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGRGKKIKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ V + RQT++ S P+ + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISHV-----PESRQTLLFSATMPD---AIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + P + + LT L
Sbjct: 191 IGVKFMKDPEHVKIAAKELTTDL 213
Score = 94.4 bits (233), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + + K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTDLVDQYYVRVKENEKFDTMTRLIDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ V +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTQVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ +KV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRGKKIKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I SR+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISHVPESRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|420436804|ref|ZP_14935796.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-28]
gi|393054544|gb|EJB55472.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-28]
Length = 492
Score = 206 bits (525), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 125/434 (28%), Positives = 208/434 (47%), Gaps = 72/434 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 FGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---F 160
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP---------- 205
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
IKRL D + KI I T ++ +H+ ++ +
Sbjct: 206 -------------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL 252
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
Q P +++VF + L Q L LH M+QR R ++ F+ + +L+
Sbjct: 253 DTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLV 312
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M
Sbjct: 313 ATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRM 372
Query: 1193 FNSLEKKVDLPDFP 1206
++ +++L + P
Sbjct: 373 QKEIDSEIELFEIP 386
Score = 120 bits (301), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 120/238 (50%), Gaps = 50/238 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 FGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KF 160
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|388502288|gb|AFK39210.1| unknown [Lotus japonicus]
Length = 460
Score = 206 bits (524), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 153/489 (31%), Positives = 240/489 (49%), Gaps = 76/489 (15%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
Q + + + + A + G+K P+KIQ +P A ++DI+G AETGSGKT AF +
Sbjct: 8 QAVTFKSLGLNDALCEACEKLGWKNPSKIQCEALPIAF-QKRDIIGLAETGSGKTGAFAL 66
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
PIL ++ T +L+AL+L PT
Sbjct: 67 PILQALL---------------------------------------ATPQRLFALVLTPT 87
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
RELA Q+ G VK A +VGGM Q L K PHI++ATPGRL + L +
Sbjct: 88 RELAYQISEQFEALGSSIGVKCAVIVGGMDMMSQSIALAKKPHIVIATPGRLVD--HLEN 145
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
L I YLV+DE DR++ +L IL + S R T+++SAT+T
Sbjct: 146 TKGFSLRSIQYLVMDEADRILNMDFEVDLDKIL---KILPPSSTRSTYLYSATMT----- 197
Query: 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 1065
KKV+K ++R +++ P +++++K L ++ + K
Sbjct: 198 -----------KKVAK----LQRA----SLRDPIKIEVSDKYATVDKLQQTYLFIPSKFK 238
Query: 1066 DSYLYYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
D YL + G+++ VF ++ ++ RL L L + +PLH M+Q +RL L++F+
Sbjct: 239 DVYLVSILNDMSGKSIIVFASTCTTTLRLALLTRNLGFTTVPLHGQMSQTKRLGALNKFK 298
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+ SIL+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ +
Sbjct: 299 GKARSILIATDVASRGLDIPHVDVVINYDIPNHSKDYIHRVGRTARAGRSGKSITFVTQY 358
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHR 1243
+I LY ++ + K+ LP + E + + +R++ A ++ K I+ R D HR
Sbjct: 359 DIELYQRIEFLIGKQ--LPQYVTQEDEVMTLLERVNEADRQARIQMKEIEDERKD---HR 413
Query: 1244 SGRTARANN 1252
R + N
Sbjct: 414 QKRKKKEQN 422
Score = 108 bits (269), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 126/223 (56%), Gaps = 13/223 (5%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
S++ +Q L+ ++ +I+++ ++ + K L KIL + +YLY T+ ++
Sbjct: 150 SLRSIQYLVMDEADRILNMDFEVDLDKIL---KILPPSSTRSTYLY-------SATMTKK 199
Query: 496 IQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCN 552
+ L +++ P +++++K L ++ + KD YL + G+++ VF +
Sbjct: 200 VAKLQRASLRDPIKIEVSDKYATVDKLQQTYLFIPSKFKDVYLVSILNDMSGKSIIVFAS 259
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
+ ++ RL L L + +PLH M+Q +RL L++F+ + SIL+ATDVA+RGLDIP
Sbjct: 260 TCTTTLRLALLTRNLGFTTVPLHGQMSQTKRLGALNKFKGKARSILIATDVASRGLDIPH 319
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
++ VI+Y +P S+ YIHR GRTARA G ++ + +I L
Sbjct: 320 VDVVINYDIPNHSKDYIHRVGRTARAGRSGKSITFVTQYDIEL 362
Score = 107 bits (268), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 98/213 (46%), Gaps = 42/213 (19%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
Q + + + + A + G+K P+KIQ +P A ++DI+G AETGSGKT AF +
Sbjct: 8 QAVTFKSLGLNDALCEACEKLGWKNPSKIQCEALPIAF-QKRDIIGLAETGSGKTGAFAL 66
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
PIL ++ T +L+AL+L PT
Sbjct: 67 PILQALL---------------------------------------ATPQRLFALVLTPT 87
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
RELA Q+ G VK A +VGGM Q L K PHI++ATPGRL + L +
Sbjct: 88 RELAYQISEQFEALGSSIGVKCAVIVGGMDMMSQSIALAKKPHIVIATPGRLVD--HLEN 145
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
L I YLV+DE DR++ +L IL
Sbjct: 146 TKGFSLRSIQYLVMDEADRILNMDFEVDLDKIL 178
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G VK A +VGGM Q L K PHI++ATPG L
Sbjct: 81 ALVLTPTRELAYQISEQFEALGSSIGVKCAVIVGGMDMMSQSIALAKKPHIVIATPGRLV 140
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQ--PKANSRENA 1468
+ K L +SI+YL + D L +MD +D + +++ P +++R
Sbjct: 141 DHLENTKGFSL-RSIQYLVM----DEADRIL-----NMDFEVDLDKILKILPPSSTRSTY 190
Query: 1469 LMSKALVSKRKELQ 1482
L S + K +LQ
Sbjct: 191 LYSATMTKKVAKLQ 204
>gi|325102936|ref|YP_004272590.1| DEAD/DEAH box helicase [Pedobacter saltans DSM 12145]
gi|324971784|gb|ADY50768.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145]
Length = 408
Score = 206 bits (524), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 129/418 (30%), Positives = 212/418 (50%), Gaps = 75/418 (17%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
K+NI I R+L + GFK PT IQ +P +L+ +DI+ A+TG+GKT AF IP+++ +
Sbjct: 5 KYNISSGIKRSLEEAGFKKPTDIQFKSIPQ-ILSGQDILAIAQTGTGKTAAFAIPLISML 63
Query: 832 VNK---LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
L+ PT + A+++ PTREL
Sbjct: 64 ERSKPHLDKPT-------------------------------------IKAVVMVPTREL 86
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
AIQ++ L+ GKYT + V+GG+ E QL+ LNK +L+ATPGR+ + + GH +L
Sbjct: 87 AIQIEQVFLNLGKYTSIIPLAVIGGVEIEPQLKKLNKA-DVLIATPGRIMDLVFKGHLYL 145
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ I++LV+DE DRM+E G + ++K ++ T + RQT FSAT+ ++K+
Sbjct: 146 KQ---IDFLVLDEADRMLEQGFYNDIKKLI-----TLLPKRRQTMFFSATINDTIKD--- 194
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
L L + P + L+ K ++K + + D+K +
Sbjct: 195 --------------------LAYAL-VNKPVRIQLSPKDPVSKNVDHAVAYVGMDDKRFF 233
Query: 1069 LYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L I ++ G+ +VF + +R+ + + + +H +Q+ R + LD FRD
Sbjct: 234 LERLIKENQGKKIIVFVRTKIRAERVAKAMERVNIHTETIHGDKDQKNRFQVLDNFRDGK 293
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
N IL+ATD++ARGLD+ G++ V++Y +P E Y+HR GRT R + G + +E
Sbjct: 294 NQILIATDISARGLDVKGVDFVVNYDLPEVPENYVHRIGRTGRGTSRGRAVSFCSEEE 351
Score = 127 bits (319), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 50/229 (21%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
K+NI I R+L + GFK PT IQ +P +L+ +DI+ A+TG+GKT AF IP+++ +
Sbjct: 5 KYNISSGIKRSLEEAGFKKPTDIQFKSIPQ-ILSGQDILAIAQTGTGKTAAFAIPLISML 63
Query: 215 VNK---LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
L+ PT + A+++ PTREL
Sbjct: 64 ERSKPHLDKPT-------------------------------------IKAVVMVPTREL 86
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
AIQ++ L+ GKYT + V+GG+ E QL+ LNK +L+ATPGR+ + + GH +L
Sbjct: 87 AIQIEQVFLNLGKYTSIIPLAVIGGVEIEPQLKKLNKA-DVLIATPGRIMDLVFKGHLYL 145
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
+ I++LV+DE DRM+E G + ++K ++ T + RQTM S
Sbjct: 146 KQ---IDFLVLDEADRMLEQGFYNDIKKLI-----TLLPKRRQTMFFSA 186
Score = 94.7 bits (234), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-T 547
T+ + I+DL + P + L+ K ++K + + D+K +L I ++ G+
Sbjct: 187 TINDTIKDLAYALVNKPVRIQLSPKDPVSKNVDHAVAYVGMDDKRFFLERLIKENQGKKI 246
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
+VF + +R+ + + + +H +Q+ R + LD FRD N IL+ATD++ARG
Sbjct: 247 IVFVRTKIRAERVAKAMERVNIHTETIHGDKDQKNRFQVLDNFRDGKNQILIATDISARG 306
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
LD+ G++ V++Y +P E Y+HR GRT R + G V +E
Sbjct: 307 LDVKGVDFVVNYDLPEVPENYVHRIGRTGRGTSRGRAVSFCSEEE 351
Score = 61.2 bits (147), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 10/75 (13%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA-- 1413
A+++ PTRELAIQ++ L+ GKYT + V+GG+ E QL+ LNK +L+ATPG
Sbjct: 77 AVVMVPTRELAIQIEQVFLNLGKYTSIIPLAVIGGVEIEPQLKKLNKA-DVLIATPGRIM 135
Query: 1414 -------LSLKRIDL 1421
L LK+ID
Sbjct: 136 DLVFKGHLYLKQIDF 150
>gi|336063871|ref|YP_004558730.1| ATP-dependent RNA helicase [Streptococcus pasteurianus ATCC 43144]
gi|334282071|dbj|BAK29644.1| ATP-dependent RNA helicase [Streptococcus pasteurianus ATCC 43144]
Length = 526
Score = 206 bits (524), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 137/432 (31%), Positives = 212/432 (49%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ RN + L++APTREL
Sbjct: 61 ----NKIDT-----------------------------------NRNVVQTLVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ ++K
Sbjct: 142 DH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPEAIKRI-- 191
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
+K +Q+ P+ V + K T + + I K +K D+
Sbjct: 192 ----------------GVKFMQN------PEHVKVAAKELTTDLVDQYYIRVKEQDKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 IDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+ + L KK
Sbjct: 350 -YLSIIEKLTKK 360
Score = 125 bits (314), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 126/263 (47%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ RN + L++APTREL
Sbjct: 61 ----NKIDT-----------------------------------NRNVVQTLVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S PE + R
Sbjct: 142 DH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPE---AIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + P V + LT L
Sbjct: 191 IGVKFMQNPEHVKVAAKELTTDL 213
Score = 93.6 bits (231), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+++P+ V + K T + + I K +K D+ + P ++VF + V L
Sbjct: 196 MQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 73 LVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL-- 130
Query: 1417 KRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSK 1472
+DL K ++++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 --LDLIKRKALKLDHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFSA 182
Query: 1473 AL 1474
+
Sbjct: 183 TM 184
>gi|450128837|ref|ZP_21869087.1| ATP-dependent RNA helicase [Streptococcus mutans U2A]
gi|449229216|gb|EMC28542.1| ATP-dependent RNA helicase [Streptococcus mutans U2A]
Length = 517
Score = 206 bits (524), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 215/432 (49%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------INNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 121 bits (303), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------INNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|420459761|ref|ZP_14958560.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-27]
gi|393076863|gb|EJB77612.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-27]
Length = 492
Score = 206 bits (524), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GKYT K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKYTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 119 bits (299), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GKYT K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKYTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GKYT K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKYTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|450088713|ref|ZP_21854900.1| putative ATP-dependent RNA helicase [Streptococcus mutans NV1996]
gi|450134981|ref|ZP_21871150.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML8]
gi|449148899|gb|EMB52727.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML8]
gi|449216305|gb|EMC16436.1| putative ATP-dependent RNA helicase [Streptococcus mutans NV1996]
Length = 517
Score = 206 bits (524), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 215/432 (49%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------INNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 121 bits (303), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------INNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|342218233|ref|ZP_08710855.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII 135-E]
gi|341590668|gb|EGS33904.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII 135-E]
Length = 515
Score = 206 bits (524), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 165/538 (30%), Positives = 253/538 (47%), Gaps = 101/538 (18%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ ++ NI TI++AL GF+ PT IQ+ +P AL +D++G A+TG+GKT AFGIP
Sbjct: 2 LEKFQNLNISTTILQALNTMGFEEPTPIQAEAIPVALQG-QDMIGQAQTGTGKTAAFGIP 60
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
+L I+ KT N + ++L+PTR
Sbjct: 61 VLEKILAS------------------------------------SKTSN-VQTIVLSPTR 83
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA+QV + +YT ++ + GG E+QLR L K P I+VATPGRL + ++ G
Sbjct: 84 ELAMQVAEELNHLAQYTSIQALPIYGGQDMERQLRRLRKHPQIIVATPGRLIDHMKRGTI 143
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
HL E I+ +V+DE D M++ G ++ I M+ T + RQT +FSAT+ ++
Sbjct: 144 HLDE---ISTIVLDEADEMLDMGFIDDIHTI-----MSATPETRQTLLFSATMPAPIQ-- 193
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI-VDLTEKIGI-TKTLTESKILCKHDE 1064
K Q+ K DP I R+ K+ ++ +DL E+ I T + +LC+
Sbjct: 194 ---KLAQTFLK-----DPQIIRM------KAKEVTMDLIEQSYIETPDRQKFDVLCR--- 236
Query: 1065 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
LQ P ++F + V L++ L S +H + Q +R + +FR
Sbjct: 237 ------LLDLQEPDLAIIFVRTKRRVDELSEALKKRGYSSEGIHGDLTQAKRDSVIRQFR 290
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G +
Sbjct: 291 EKTIDILVATDVAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKTGEATTFV--- 347
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI------DLAKSIEYLESKIKKNRPD 1238
IP ++ ++E+ LIK+ I LA+++E + +N
Sbjct: 348 -IPRELEHLRAIER---------------LIKRHIVRHQAPTLAEALEGAQQTAIRNLIA 391
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
+S RAN E L L D + L L K+ DL I E I++
Sbjct: 392 TVEEQSASAYRANAEEL---LSHYDSVALLSAAIKQLTKEPDLTPVKITEEAPLRIRR 446
Score = 129 bits (323), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 46/234 (19%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ ++ NI TI++AL GF+ PT IQ+ +P AL +D++G A+TG+GKT AFGIP
Sbjct: 2 LEKFQNLNISTTILQALNTMGFEEPTPIQAEAIPVALQG-QDMIGQAQTGTGKTAAFGIP 60
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
+L I+ KT N + ++L+PTR
Sbjct: 61 VLEKILAS------------------------------------SKTSN-VQTIVLSPTR 83
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA+QV + +YT ++ + GG E+QLR L K P I+VATPGRL + ++ G
Sbjct: 84 ELAMQVAEELNHLAQYTSIQALPIYGGQDMERQLRRLRKHPQIIVATPGRLIDHMKRGTI 143
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
HL E I+ +V+DE D M++ G ++ I M+ T + RQT++ S P
Sbjct: 144 HLDE---ISTIVLDEADEMLDMGFIDDIHTI-----MSATPETRQTLLFSATMP 189
Score = 87.0 bits (214), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEK--DSYLYYFILQHPGR 546
T+ IQ L +K P+I+ + K +T L E + D + D LQ P
Sbjct: 187 TMPAPIQKLAQTFLKDPQIIRMKAK-EVTMDLIEQSYIETPDRQKFDVLCRLLDLQEPDL 245
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
++F + V L++ L S +H + Q +R + +FR++ IL+ATDVAAR
Sbjct: 246 AIIFVRTKRRVDELSEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTIDILVATDVAAR 305
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
GLDI G+ HV +Y +P+ E Y+HR GRT RA G +
Sbjct: 306 GLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKTGEATTFV 347
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
++L+PTRELA+QV + +YT ++ + GG E+QLR L K P I+VATPG L
Sbjct: 77 IVLSPTRELAMQVAEELNHLAQYTSIQALPIYGGQDMERQLRRLRKHPQIIVATPGRL-- 134
Query: 1417 KRID-LAKSIEYLE--SKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSKA 1473
ID + + +L+ S I + D L DM I D ++ +R+ L S
Sbjct: 135 --IDHMKRGTIHLDEISTIVLDEADEML-----DMGFIDDIHTIMSATPETRQTLLFSAT 187
Query: 1474 LVSKRKELQSLLGKSVQ 1490
+ + ++L K Q
Sbjct: 188 MPAPIQKLAQTFLKDPQ 204
>gi|383851888|ref|XP_003701463.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Megachile
rotundata]
Length = 449
Score = 206 bits (524), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 150/464 (32%), Positives = 239/464 (51%), Gaps = 90/464 (19%)
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G K PT IQ +P +LA +D +G A+TGSGKTLAF +PIL
Sbjct: 20 GLKNPTPIQQNCIPR-ILAGEDCIGCAKTGSGKTLAFALPIL------------------ 60
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
++L E+ ++ALIL PTRELA Q+ + GK +K
Sbjct: 61 ----------QKLSEDPYG-----------IFALILTPTRELAFQIADQFSAIGKSIGLK 99
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966
+VGGM Q L+K PHI+VATPGRL + L + L KI +LV+DE DR++
Sbjct: 100 KCVIVGGMDMVIQGLELSKHPHIVVATPGRLAD--HLTSCNTFSLKKIKFLVLDEADRLL 157
Query: 967 ESGHFP-ELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 1025
E GHF +LK I D + + +Q +FSAT+T +L
Sbjct: 158 E-GHFDDQLKVIFDAL-----PKQKQMLLFSATMTDALS--------------------- 190
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGI--TKTLTESKILCKHDEKDSYLYYFI-----LQHPG 1078
+++D+++ K I + TE G+ + L + +LC D +DS+L I G
Sbjct: 191 --KVKDIVS-KKAFIWESTEDSGVATVRQLDQRYVLCPSDVRDSFLVEVIRTFRTTNENG 247
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
++F ++ + + L+ +L+ + + LHA + Q+ RL L +F+ + IL+ATDVAA
Sbjct: 248 SIMIFTDTCKNCQVLSMMLSDVGFKNVALHAMIKQKDRLAALSQFKSNHIQILIATDVAA 307
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP +E V+++ VP + YIHR GRTARA G+ + LI ++ IK+ +++E+
Sbjct: 308 RGLDIPTVELVVNHIVPNVPKEYIHRVGRTARAGKGGMAITLIAPND----IKLLHAVEE 363
Query: 1199 KVD--LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNW 1240
+ L ++ ++++ + I +I +AK E+++K + D +
Sbjct: 364 AIGTKLTEYKVNDTEIIKILTQISVAKR----EAEMKLDETDFY 403
Score = 180 bits (457), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 147/489 (30%), Positives = 218/489 (44%), Gaps = 154/489 (31%)
Query: 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229
G K PT IQ +P +LA +D +G A+TGSGKTLAF +PIL
Sbjct: 20 GLKNPTPIQQNCIPR-ILAGEDCIGCAKTGSGKTLAFALPIL------------------ 60
Query: 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 289
++L E+ ++ALIL PTRELA Q+ + GK +K
Sbjct: 61 ----------QKLSEDPYG-----------IFALILTPTRELAFQIADQFSAIGKSIGLK 99
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349
+VGGM Q L+K PHI+VATPGRL + L + L KI +LV+DE DR++
Sbjct: 100 KCVIVGGMDMVIQGLELSKHPHIVVATPGRLAD--HLTSCNTFSLKKIKFLVLDEADRLL 157
Query: 350 ESGHF-PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 408
E GHF +LK I D + P+Q +Q +FSA
Sbjct: 158 E-GHFDDQLKVIFDAL-------PKQ--------------------------KQMLLFSA 183
Query: 409 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI--TKTLTE 466
T+T +L +++D+++ K I + TE G+ + L +
Sbjct: 184 TMTDAL-----------------------SKVKDIVS-KKAFIWESTEDSGVATVRQLDQ 219
Query: 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKIL 526
+LC D +DS+L I RT +T E+
Sbjct: 220 RYVLCPSDVRDSFLVEVI-----RTF-------------------------RTTNEN--- 246
Query: 527 CKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
G ++F ++ + + L+ +L+ + + LHA + Q+ RL
Sbjct: 247 ------------------GSIMIFTDTCKNCQVLSMMLSDVGFKNVALHAMIKQKDRLAA 288
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
L +F+ + IL+ATDVAARGLDIP +E V+++ VP + YIHR GRTARA G+ +
Sbjct: 289 LSQFKSNHIQILIATDVAARGLDIPTVELVVNHIVPNVPKEYIHRVGRTARAGKGGMAIT 348
Query: 647 LIESDEIPL 655
LI ++I L
Sbjct: 349 LIAPNDIKL 357
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 38/64 (59%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y ALIL PTRELA Q+ + GK +K +VGGM Q L+K PHI+VATP
Sbjct: 68 YGIFALILTPTRELAFQIADQFSAIGKSIGLKKCVIVGGMDMVIQGLELSKHPHIVVATP 127
Query: 1412 GALS 1415
G L+
Sbjct: 128 GRLA 131
Score = 42.0 bits (97), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 58/101 (57%), Gaps = 10/101 (9%)
Query: 1224 SIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD--L 1281
++E + + I N P ++HR GRTARA G+ + LI ++ IK+ +++E+ + L
Sbjct: 314 TVELVVNHIVPNVPKEYIHRVGRTARAGKGGMAITLIAPND----IKLLHAVEEAIGTKL 369
Query: 1282 PDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEK 1322
++ ++++ + I +I +AK E+++K + D + +K
Sbjct: 370 TEYKVNDTEIIKILTQISVAKR----EAEMKLDETDFYEKK 406
>gi|450005719|ref|ZP_21826823.1| putative ATP-dependent RNA helicase [Streptococcus mutans NMT4863]
gi|449188314|gb|EMB90034.1| putative ATP-dependent RNA helicase [Streptococcus mutans NMT4863]
Length = 517
Score = 206 bits (524), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 215/432 (49%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------INNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 121 bits (303), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------INNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|449961479|ref|ZP_21810850.1| putative ATP-dependent RNA helicase [Streptococcus mutans 4VF1]
gi|450141452|ref|ZP_21873112.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML1]
gi|450146360|ref|ZP_21874902.1| putative ATP-dependent RNA helicase [Streptococcus mutans 1ID3]
gi|449148357|gb|EMB52237.1| putative ATP-dependent RNA helicase [Streptococcus mutans 1ID3]
gi|449166365|gb|EMB69307.1| putative ATP-dependent RNA helicase [Streptococcus mutans 4VF1]
gi|449230998|gb|EMC30227.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML1]
Length = 517
Score = 206 bits (524), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 215/432 (49%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------INNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------INNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIAAKELTTDL 213
Score = 97.8 bits (242), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|290580897|ref|YP_003485289.1| ATP-dependent RNA helicase [Streptococcus mutans NN2025]
gi|449971807|ref|ZP_21814550.1| putative ATP-dependent RNA helicase [Streptococcus mutans 2VS1]
gi|450060032|ref|ZP_21843592.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML4]
gi|450067851|ref|ZP_21846836.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML9]
gi|450093968|ref|ZP_21856845.1| putative ATP-dependent RNA helicase [Streptococcus mutans W6]
gi|450150739|ref|ZP_21876730.1| putative ATP-dependent RNA helicase [Streptococcus mutans 14D]
gi|450166956|ref|ZP_21882509.1| putative ATP-dependent RNA helicase [Streptococcus mutans B]
gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
gi|449171557|gb|EMB74214.1| putative ATP-dependent RNA helicase [Streptococcus mutans 2VS1]
gi|449202498|gb|EMC03410.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML4]
gi|449207793|gb|EMC08456.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML9]
gi|449216747|gb|EMC16840.1| putative ATP-dependent RNA helicase [Streptococcus mutans W6]
gi|449233184|gb|EMC32266.1| putative ATP-dependent RNA helicase [Streptococcus mutans 14D]
gi|449239040|gb|EMC37773.1| putative ATP-dependent RNA helicase [Streptococcus mutans B]
Length = 517
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 215/432 (49%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK++ N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------INNVVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDA------ 187
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
IKR+ + +K P+ V + K T + + I K +EK D+
Sbjct: 188 -----------------IKRI-GVKFMKEPEHVKIVAKELTTDLVDQYYIRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLQIIEKLTKK 360
Score = 121 bits (304), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++ E I+ A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK++ N + AL++APTREL
Sbjct: 61 ----NKIDV-----------------------------------INNVVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S P + + R
Sbjct: 142 NH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMP---DAIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + +P + + LT L
Sbjct: 191 IGVKFMKEPEHVKIVAKELTTDL 213
Score = 97.4 bits (241), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIVAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHVETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|115492615|ref|XP_001210935.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
gi|121742543|sp|Q0CZN5.1|DRS1_ASPTN RecName: Full=ATP-dependent RNA helicase drs1
gi|114197795|gb|EAU39495.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
Length = 821
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 138/408 (33%), Positives = 200/408 (49%), Gaps = 72/408 (17%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+FN+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL
Sbjct: 308 EFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPIL--- 363
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
E +L F + IL PTRELA+Q
Sbjct: 364 ---------------------ERLL------------FRPRKVPTSRVAILMPTRELAVQ 390
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
N YT + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 391 CYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDT 450
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+I LV+DE DRM+E G EL IL T + RQT +FSAT+T ++ + +
Sbjct: 451 LEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDTVDKLIRV-- 501
Query: 1012 GQSKSKKV---SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
G ++ ++ SK + S+ +Q+ + ++ + D++ Y
Sbjct: 502 GLNRPVRLMVDSKKNTSLTLVQEFVRLRP----------------------GREDKRLGY 539
Query: 1069 LYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + + GR +VF R+ + +L LH SM+Q QR+K+++ FRD
Sbjct: 540 LLYLCKEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFRDGK 599
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
+ LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 600 VAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSG 647
Score = 111 bits (278), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 110/240 (45%), Gaps = 44/240 (18%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+FN+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL
Sbjct: 308 EFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPIL--- 363
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
E +L F + IL PTRELA+Q
Sbjct: 364 ---------------------ERLL------------FRPRKVPTSRVAILMPTRELAVQ 390
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
N YT + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 391 CYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDT 450
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+I LV+DE DRM+E G EL IL T + RQTM+ S + + L RV +
Sbjct: 451 LEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDTVDKLIRVGL 503
Score = 107 bits (268), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 528 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ D++ YL Y + + GR +VF R+ + +L LH SM+Q QR+K+
Sbjct: 532 REDKRLGYLLYLCKEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKS 591
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
++ FRD + LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 592 VENFRDGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACT 651
Query: 647 L 647
+
Sbjct: 652 I 652
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F R + S A IL PTRELA+Q N YT + +VGG S +Q IL K
Sbjct: 366 LLFRPRKVPTSRVA-ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 424
Query: 1403 CPHILVATPG 1412
P +++ATPG
Sbjct: 425 RPDVIIATPG 434
>gi|384892304|ref|YP_005766397.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
gi|308061601|gb|ADO03489.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
Length = 492
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADRILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ K++L + P
Sbjct: 377 DSKIELFEIP 386
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + DR+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADRI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLI 648
+ L+
Sbjct: 358 ITLV 361
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|385220091|ref|YP_005781563.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
gi|317008898|gb|ADU79478.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
Length = 492
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/431 (29%), Positives = 207/431 (48%), Gaps = 72/431 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFPI 1207
+ +++L + PI
Sbjct: 377 DSEIELFEIPI 387
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|242042443|ref|XP_002468616.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
gi|241922470|gb|EER95614.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
Length = 454
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 151/494 (30%), Positives = 243/494 (49%), Gaps = 87/494 (17%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
Q + + + I ++ A G+K PT+IQ+ +P AL KD++ A+TGSGKT AF +
Sbjct: 22 QASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQG-KDLIALAQTGSGKTGAFAL 80
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
PIL +E+L + E + +A +L+PT
Sbjct: 81 PIL------------------------QELLSNRQAEQS------------FFACVLSPT 104
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
RELAIQ+ G ++ + +VGG+ +Q+ + K PHI+V TPGRL +
Sbjct: 105 RELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKRPHIVVGTPGRLLD------ 158
Query: 946 FHLTE-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000
HLTE L KI YLV+DE D+++ E + LD + + E + R+TF+FSAT+T
Sbjct: 159 -HLTETKGFSLKKIKYLVLDEADKLLNV----EFEKSLDDI-LREIPKDRRTFLFSATMT 212
Query: 1001 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 1060
KKV+K LQ +++P V+ K +L +
Sbjct: 213 ----------------KKVNK-------LQRAC-LRNPAKVEAASKYSTVDSLKQEFYFV 248
Query: 1061 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
D+KD YL + + + ++F + S + L +L L + + M+Q +RL
Sbjct: 249 PADDKDCYLLHVLNERQDSMIMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGA 308
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
L+RF+ ++ +IL+ TDVA+RGLDI G++ VI+Y +P S+ Y+HR GRTARA G +
Sbjct: 309 LNRFKAKDCNILICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVS 368
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN 1239
L+ E ++ + L K++D +D + ++K I AK I +K+K D+
Sbjct: 369 LVNQYEAQWFVLIEKLLGKQID--QRKVDRDEVMILKGPISDAKRIAL--TKLK----DS 420
Query: 1240 WLHRSGRTARANNE 1253
H+ R A ++E
Sbjct: 421 GGHKKRRKAGDDDE 434
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 158/597 (26%), Positives = 254/597 (42%), Gaps = 173/597 (28%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
Q + + + I ++ A G+K PT+IQ+ +P AL KD++ A+TGSGKT AF +
Sbjct: 22 QASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQG-KDLIALAQTGSGKTGAFAL 80
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
PIL +E+L + E + +A +L+PT
Sbjct: 81 PIL------------------------QELLSNRQAEQS------------FFACVLSPT 104
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
RELAIQ+ G ++ + +VGG+ +Q+ + K PHI+V TPGRL +
Sbjct: 105 RELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKRPHIVVGTPGRLLD------ 158
Query: 329 FHLTE-----LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
HLTE L KI YLV+DE D+++ N+
Sbjct: 159 -HLTETKGFSLKKIKYLVLDEADKLL---------NV----------------------- 185
Query: 384 ELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL 443
E + LD + + E + R+TF+FSAT+T KKV+K LQ
Sbjct: 186 EFEKSLDDI-LREIPKDRRTFLFSATMT----------------KKVNK-------LQRA 221
Query: 444 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIK 503
+++P V+ K +L + D+KD YL + +
Sbjct: 222 C-LRNPAKVEAASKYSTVDSLKQEFYFVPADDKDCYLLHVL------------------- 261
Query: 504 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
++ +DS + ++F + S + L +
Sbjct: 262 -------------------------NERQDSMI-----------MIFVRTCESTRLLALM 285
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
L L + + M+Q +RL L+RF+ ++ +IL+ TDVA+RGLDI G++ VI+Y +P
Sbjct: 286 LRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILICTDVASRGLDIQGVDMVINYDIPM 345
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDI 683
S+ Y+HR GRTARA G V L+ E F L E+ ++ ++ + D+++ +
Sbjct: 346 NSKDYVHRVGRTARAGRSGYAVSLVNQYEAQW---FVLIEKLLGKQIDQRKVDRDEVMIL 402
Query: 684 NVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKK 740
+S K+ K S A +D EE++ D HSK+ K KK
Sbjct: 403 KGPISDAKRIALTKLKDSGGHKKRRKAGDDD--------EEVE-DYSHSKRPKSFKK 450
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 1344 IFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
+ +R S+ A +L+PTRELAIQ+ G ++ + +VGG+ +Q+ + K
Sbjct: 86 LLSNRQAEQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKR 145
Query: 1404 PHILVATPGAL 1414
PHI+V TPG L
Sbjct: 146 PHIVVGTPGRL 156
>gi|402467624|gb|EJW02900.1| hypothetical protein EDEG_02724 [Edhazardia aedis USNM 41457]
Length = 403
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/426 (29%), Positives = 211/426 (49%), Gaps = 73/426 (17%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M EW K I + + L +KGF TPT +Q V+P +L +K ++ A TGSGKTLAF +P
Sbjct: 1 MNEWNKLKIVKLLSEILIEKGFSTPTNVQKEVIPH-VLQKKSVITLANTGSGKTLAFAVP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL I+ K + LI+ PTR
Sbjct: 60 ILNDII---------------------------------------KYNTYYHTLIITPTR 80
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA+Q+ N + G+ ++V ++GG+ ++Q R + + PHI++ TPGRL +Q
Sbjct: 81 ELAMQIANVFENLGQNHGLRVVTLIGGVDEKEQKRKIFESPHIIIGTPGRLSLIMQ---- 136
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
+ ++ Y V+DE D+++E+ + +++ I + E ++ + +FSAT+T SL++
Sbjct: 137 KVKLFDRLQYFVLDEGDKLLETTYADDIRKISN-----EVNENKSMLIFSATMTDSLQSL 191
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
++L N+ P V + + L + + K+
Sbjct: 192 IDL------------------------NLIDPVKVVINKTFDTVSKLIQKYVFLPQKYKE 227
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+YLY + + +VF +S + L L + + LH + Q +R + L+ F +
Sbjct: 228 TYLYLICQDNLSKKIVFVSSCLGAQTLKIFLQNMNIDCVALHGKLKQDERCEVLNIFSGK 287
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+ +LLATDVAARGLDIP +E VI+Y +PRTS+ Y+HR GRTAR + EGL + + ++
Sbjct: 288 DACVLLATDVAARGLDIPEVEMVINYDLPRTSKEYVHRVGRTARLDKEGLAVNFVTQYDV 347
Query: 1187 PLYIKM 1192
L+ K+
Sbjct: 348 ALFQKI 353
Score = 110 bits (274), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 59/268 (22%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M EW K I + + L +KGF TPT +Q V+P +L +K ++ A TGSGKTLAF +P
Sbjct: 1 MNEWNKLKIVKLLSEILIEKGFSTPTNVQKEVIPH-VLQKKSVITLANTGSGKTLAFAVP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL I+ K + LI+ PTR
Sbjct: 60 ILNDII---------------------------------------KYNTYYHTLIITPTR 80
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA+Q+ N + G+ ++V ++GG+ ++Q R + + PHI++ TPGRL +Q
Sbjct: 81 ELAMQIANVFENLGQNHGLRVVTLIGGVDEKEQKRKIFESPHIIIGTPGRLSLIMQ---- 136
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRV-----------TMTETSQPRQTMIE 378
+ ++ Y V+DE D+++E+ + +++ I + V TMT++ Q++I+
Sbjct: 137 KVKLFDRLQYFVLDEGDKLLETTYADDIRKISNEVNENKSMLIFSATMTDS---LQSLID 193
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVF 406
+K ++++ T S+ Q +VF
Sbjct: 194 LNLIDPVKVVINK-TFDTVSKLIQKYVF 220
Score = 106 bits (265), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 14/195 (7%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
T+ + +Q L LN+ P V + + L + + K++YLY + + +
Sbjct: 183 TMTDSLQSLIDLNLIDPVKVVINKTFDTVSKLIQKYVFLPQKYKETYLYLICQDNLSKKI 242
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608
VF +S + L L + + LH + Q +R + L+ F ++ +LLATDVAARGL
Sbjct: 243 VFVSSCLGAQTLKIFLQNMNIDCVALHGKLKQDERCEVLNIFSGKDACVLLATDVAARGL 302
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--------VVLIESDEIPLKTKFN 660
DIP +E VI+Y +PRTS+ Y+HR GRTAR + EGL V L + E +KT
Sbjct: 303 DIPEVEMVINYDLPRTSKEYVHRVGRTARLDKEGLAVNFVTQYDVALFQKIEADIKTSMV 362
Query: 661 LQEEENNEEEERAEA 675
L E +EE+A+A
Sbjct: 363 LYE----CDEEKAKA 373
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ LI+ PTRELA+Q+ N + G+ ++V ++GG+ ++Q R + + PHI++ TPG
Sbjct: 71 YHTLIITPTRELAMQIANVFENLGQNHGLRVVTLIGGVDEKEQKRKIFESPHIIIGTPGR 130
Query: 1414 LSL--KRIDLAKSIEYL 1428
LSL +++ L ++Y
Sbjct: 131 LSLIMQKVKLFDRLQYF 147
>gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 526
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 211/432 (48%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ E I+ + + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSENILATVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
I D N RN + AL++APTREL
Sbjct: 61 DKI----------DTN-----------------------------RNLVQALVIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ L++DE D M+ G +++ I+ RV T RQT +FSAT+ ++K
Sbjct: 142 DH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPEAIKRI-- 191
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
+K +Q+ P+ V + K T + + I K +K D+
Sbjct: 192 ----------------GVKFMQN------PEHVKVAAKELTTDLVDQYYIRVKEQDKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 230 MTRLMDVNQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDN 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 IDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+ + L KK
Sbjct: 350 -YLSIIEKLTKK 360
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 125/263 (47%), Gaps = 51/263 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ E I+ + + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSENILATVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
I D N RN + AL++APTREL
Sbjct: 61 DKI----------DTN-----------------------------RNLVQALVIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 82 AVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ L++DE D M+ G +++ I+ RV T RQT++ S PE + R
Sbjct: 142 DH---VETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPE---AIKR 190
Query: 392 VTMTETSQPRQTFVFSATLTHSL 414
+ + P V + LT L
Sbjct: 191 IGVKFMQNPEHVKVAAKELTTDL 213
Score = 93.6 bits (231), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+++P+ V + K T + + I K +K D+ + P ++VF + V L
Sbjct: 196 MQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVNQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 17/132 (12%)
Query: 1347 SRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 1406
+RNL AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI
Sbjct: 66 NRNL---VQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGAHI 122
Query: 1407 LVATPGALSLKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKA 1462
+V TPG L +DL K ++++E+ I + D L +M + D E +I
Sbjct: 123 VVGTPGRL----LDLIKRKALKLDHVETLI-LDEADEML-----NMGFLEDIEAIISRVP 172
Query: 1463 NSRENALMSKAL 1474
+R+ L S +
Sbjct: 173 ETRQTLLFSATM 184
>gi|392988049|ref|YP_006486642.1| DEAD/DEAH box helicase [Enterococcus hirae ATCC 9790]
gi|392335469|gb|AFM69751.1| DEAD-box ATP dependent DNA helicase [Enterococcus hirae ATCC 9790]
Length = 503
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 141/468 (30%), Positives = 231/468 (49%), Gaps = 79/468 (16%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE +++++ + GF+ T IQS +P AL + KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQSETIPLAL-SGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDTNRHELQGLVIAPTRELAIQTQEE 88
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKRVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVE 145
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DE D M+ G +++NI+ +V + RQT +FSAT+ ++KN + +K
Sbjct: 146 TLVLDEADEMLNMGFLEDIENIISKV-----PEERQTLLFSATMPPAIKN-IGVK----- 194
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFIL 1074
+KSP V + K + + + K EK D F +
Sbjct: 195 ------------------FMKSPTHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDV 236
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q P T+VF + V L + L +H ++Q++R+ L F++ + IL+AT
Sbjct: 237 QTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILVAT 296
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G+++ + +E+ + N
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVIEN 356
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
+K++ P ++ + L ++E +E+K+++N D +L
Sbjct: 357 LTKKRMATLRPPTEKEAF-----KGQLGAAVEQIEAKLEENGLDKYLQ 399
Score = 119 bits (297), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 119/231 (51%), Gaps = 50/231 (21%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE +++++ + GF+ T IQS +P AL + KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQSETIPLAL-SGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDTNRHELQGLVIAPTRELAIQTQEE 88
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKRVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVE 145
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKNI 388
LV+DE D M+ G +++NI+ +V + RQT++ S P +KNI
Sbjct: 146 TLVLDEADEMLNMGFLEDIENIISKV-----PEERQTLLFSATMPPAIKNI 191
Score = 94.0 bits (232), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+KSP V + K + + + K EK D F +Q P T+VF + V L
Sbjct: 196 MKSPTHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L +H ++Q++R+ L F++ + IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 ARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G++V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ L++APTRELAIQ Q + G+ V+V V GG +Q+R L PHI+V T
Sbjct: 67 RHELQGLVIAPTRELAIQTQEELYRLGRDKRVRVQAVYGGADIGRQIRGLKDRPHIVVGT 126
Query: 1411 PGAL 1414
PG +
Sbjct: 127 PGRM 130
Score = 42.0 bits (97), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA G+++ + +E+ + N +K++ P ++
Sbjct: 320 PESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVIENLTKKRMATLRPPTEKEAF----- 374
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAK 1325
+ L ++E +E+K+++N D +L+ A K
Sbjct: 375 KGQLGAAVEQIEAKLEENGLDKYLQTADK 403
>gi|386750678|ref|YP_006223898.1| ATP-dependent RNA helicase [Helicobacter pylori Shi417]
gi|384556936|gb|AFH97404.1| ATP-dependent RNA helicase [Helicobacter pylori Shi417]
Length = 492
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ K++L + P
Sbjct: 377 DSKIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLI 648
+ L+
Sbjct: 358 ITLV 361
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|425790600|ref|YP_007018517.1| ATP-dependent RNA helicase [Helicobacter pylori Aklavik86]
gi|425628915|gb|AFX89455.1| ATP-dependent RNA helicase [Helicobacter pylori Aklavik86]
Length = 492
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ K++L + P
Sbjct: 377 DSKIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLI 648
+ L+
Sbjct: 358 ITLV 361
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|330803884|ref|XP_003289931.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
gi|325079973|gb|EGC33549.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
Length = 501
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 144/428 (33%), Positives = 209/428 (48%), Gaps = 88/428 (20%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+A W +IR+ Q FK P+ IQ +P + R DI+ +A+TGSGKT +F IP
Sbjct: 12 LAPW--------LIRSCKQLNFKNPSNIQYNTIPEIINGR-DIIASAKTGSGKTASFAIP 62
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL N ED ++A++L PTR
Sbjct: 63 IL--------NLLSEDPYG-------------------------------VFAVVLTPTR 83
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA+Q+ G V+V+ V+GG+ T KQ IL+K PHI+VATPGRL
Sbjct: 84 ELAVQIAEQFSAIGAPMNVQVSTVIGGIDTVKQALILDKRPHIIVATPGRLAS------- 136
Query: 947 HLTELYKI-----NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001
HLT KI +LV+DE DR++ E+ +IL+ + RQT +FSAT+T+
Sbjct: 137 HLTNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEYLP---PPTQRQTLLFSATMTN 193
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
NLKK +S +++ SP I + K TL + I
Sbjct: 194 ------NLKKLES------------------ISLNSPFIFEDNSKYDTVDTLKQEYIYMP 229
Query: 1062 HDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
KD YL Y + +H G++ +VF N+ SV+ + +L L + LH+ ++Q+ RL L
Sbjct: 230 AQAKDCYLVYLLKKHIGQSVIVFINNCYSVEAVKGMLNKLDIPAVSLHSFLDQKARLSAL 289
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
F+ +L+ATDVA+RGLDIP +E VI+Y + +S+ YIHR GRTAR G +
Sbjct: 290 KVFKSGKVKVLIATDVASRGLDIPDVEMVINYKLSNSSKDYIHRVGRTARFGKSGRAISF 349
Query: 1181 IESDEIPL 1188
I ++ L
Sbjct: 350 ITPHDVQL 357
Score = 160 bits (405), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 144/511 (28%), Positives = 209/511 (40%), Gaps = 170/511 (33%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+A W +IR+ Q FK P+ IQ +P + R DI+ +A+TGSGKT +F IP
Sbjct: 12 LAPW--------LIRSCKQLNFKNPSNIQYNTIPEIINGR-DIIASAKTGSGKTASFAIP 62
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL N ED ++A++L PTR
Sbjct: 63 IL--------NLLSEDPYG-------------------------------VFAVVLTPTR 83
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA+Q+ G V+V+ V+GG+ T KQ IL+K PHI+VATPGRL
Sbjct: 84 ELAVQIAEQFSAIGAPMNVQVSTVIGGIDTVKQALILDKRPHIIVATPGRLAS------- 136
Query: 330 HLTELYKI-----NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
HLT KI +LV+DE DR++ E+ +IL+ + P Q
Sbjct: 137 HLTNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEYL-----PPPTQ---------- 181
Query: 385 LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
RQT +FSAT+T+ NLKK +S +
Sbjct: 182 ----------------RQTLLFSATMTN------NLKKLES------------------I 201
Query: 445 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504
++ SP I + K TL + I KD YL Y + +H G+++ I + ++++
Sbjct: 202 SLNSPFIFEDNSKYDTVDTLKQEYIYMPAQAKDCYLVYLLKKHIGQSVIVFINNCYSVEA 261
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
K +L K D L+ F+ Q
Sbjct: 262 VK-----------------GMLNKLDIPAVSLHSFLDQ---------------------- 282
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+ RL L F+ +L+ATDVA+RGLDIP +E VI+Y + +
Sbjct: 283 ----------------KARLSALKVFKSGKVKVLIATDVASRGLDIPDVEMVINYKLSNS 326
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
S+ YIHR GRTAR G + I ++ L
Sbjct: 327 SKDYIHRVGRTARFGKSGRAISFITPHDVQL 357
Score = 65.9 bits (159), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y A++L PTRELA+Q+ G V+V+ V+GG+ T KQ IL+K PHI+VATP
Sbjct: 72 YGVFAVVLTPTRELAVQIAEQFSAIGAPMNVQVSTVIGGIDTVKQALILDKRPHIIVATP 131
Query: 1412 GALS 1415
G L+
Sbjct: 132 GRLA 135
>gi|350638693|gb|EHA27049.1| hypothetical protein ASPNIDRAFT_130294 [Aspergillus niger ATCC 1015]
Length = 793
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 143/465 (30%), Positives = 222/465 (47%), Gaps = 81/465 (17%)
Query: 715 PDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN 774
PDD + + SDE ++++K+K + ++ E ++ + F + FN
Sbjct: 238 PDDIASDRD---SDEESQVDAEEEEKRKAFFAPEEEKTSESAMADAKRSFQE------FN 288
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL ++
Sbjct: 289 LSRPILRGLAGVNFSNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERLL-- 345
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
F + IL PTRELA+Q N
Sbjct: 346 ----------------------------------FRPRKVPTSRVAILMPTRELAVQCYN 371
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
YT + +VGG S +Q IL K P +++ATPGR + ++ + +I
Sbjct: 372 VATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEI 431
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
LV+DE DRM+E G EL IL T + RQT +FSAT+T ++ + + G +
Sbjct: 432 --LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDTVDKLIRV--GLN 482
Query: 1015 KSKKV---SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
+ ++ +K + ++ +Q+ + ++ + D++ YL Y
Sbjct: 483 RPVRLMVDAKKNTAVTLVQEFVRLRP----------------------GREDKRLGYLLY 520
Query: 1072 FILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + GR +VF R+ + +L LH SM+Q QR+K+++ FR+ +
Sbjct: 521 LCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGKAAF 580
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 581 LLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSG 625
Score = 114 bits (286), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 133/297 (44%), Gaps = 53/297 (17%)
Query: 98 PDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN 157
PDD + + SDE S ++++K+K + ++ E ++ + F + FN
Sbjct: 238 PDDIASDRD---SDEESQVDAEEEEKRKAFFAPEEEKTSESAMADAKRSFQE------FN 288
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL ++
Sbjct: 289 LSRPILRGLAGVNFSNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERLL-- 345
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
F + IL PTRELA+Q N
Sbjct: 346 ----------------------------------FRPRKVPTSRVAILMPTRELAVQCYN 371
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
YT + +VGG S +Q IL K P +++ATPGR + ++ + +I
Sbjct: 372 VATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEI 431
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
LV+DE DRM+E G EL IL T + RQTM+ S + + L RV +
Sbjct: 432 --LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDTVDKLIRVGL 481
Score = 107 bits (267), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 528 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ D++ YL Y + + GR +VF R+ + +L LH SM+Q QR+K+
Sbjct: 510 REDKRLGYLLYLCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKS 569
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
++ FR+ + LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 570 VENFREGKAAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACT 629
Query: 647 L 647
+
Sbjct: 630 I 630
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F R + S A IL PTRELA+Q N YT + +VGG S +Q IL K
Sbjct: 344 LLFRPRKVPTSRVA-ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 402
Query: 1403 CPHILVATPG 1412
P +++ATPG
Sbjct: 403 RPDVIIATPG 412
>gi|385248761|ref|YP_005776980.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
Length = 492
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ K++L + P
Sbjct: 377 DSKIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLI 648
+ L+
Sbjct: 358 ITLV 361
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|317025749|ref|XP_001389716.2| ATP-dependent RNA helicase drs1 [Aspergillus niger CBS 513.88]
Length = 827
Score = 205 bits (522), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 143/465 (30%), Positives = 222/465 (47%), Gaps = 81/465 (17%)
Query: 715 PDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN 774
PDD + + SDE ++++K+K + ++ E ++ + F + FN
Sbjct: 265 PDDIASDRD---SDEESQVDAEEEEKRKAFFAPEEEKTSESAMADAKRSFQE------FN 315
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL ++
Sbjct: 316 LSRPILRGLAGVNFSNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERLL-- 372
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
F + IL PTRELA+Q N
Sbjct: 373 ----------------------------------FRPRKVPTSRVAILMPTRELAVQCYN 398
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
YT + +VGG S +Q IL K P +++ATPGR + ++ + +I
Sbjct: 399 VATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEI 458
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
LV+DE DRM+E G EL IL T + RQT +FSAT+T ++ + + G +
Sbjct: 459 --LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDTVDKLIRV--GLN 509
Query: 1015 KSKKV---SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
+ ++ +K + ++ +Q+ + ++ + D++ YL Y
Sbjct: 510 RPVRLMVDAKKNTAVTLVQEFVRLRP----------------------GREDKRLGYLLY 547
Query: 1072 FILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + GR +VF R+ + +L LH SM+Q QR+K+++ FR+ +
Sbjct: 548 LCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGKAAF 607
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 608 LLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSG 652
Score = 114 bits (285), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 133/297 (44%), Gaps = 53/297 (17%)
Query: 98 PDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN 157
PDD + + SDE S ++++K+K + ++ E ++ + F + FN
Sbjct: 265 PDDIASDRD---SDEESQVDAEEEEKRKAFFAPEEEKTSESAMADAKRSFQE------FN 315
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL ++
Sbjct: 316 LSRPILRGLAGVNFSNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERLL-- 372
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
F + IL PTRELA+Q N
Sbjct: 373 ----------------------------------FRPRKVPTSRVAILMPTRELAVQCYN 398
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
YT + +VGG S +Q IL K P +++ATPGR + ++ + +I
Sbjct: 399 VATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEI 458
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
LV+DE DRM+E G EL IL T + RQTM+ S + + L RV +
Sbjct: 459 --LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDTVDKLIRVGL 508
Score = 107 bits (268), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 528 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ D++ YL Y + + GR +VF R+ + +L LH SM+Q QR+K+
Sbjct: 537 REDKRLGYLLYLCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKS 596
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
++ FR+ + LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 597 VENFREGKAAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACT 656
Query: 647 L 647
+
Sbjct: 657 I 657
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F R + S A IL PTRELA+Q N YT + +VGG S +Q IL K
Sbjct: 371 LLFRPRKVPTSRVA-ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 429
Query: 1403 CPHILVATPG 1412
P +++ATPG
Sbjct: 430 RPDVIIATPG 439
>gi|420448278|ref|ZP_14947158.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-44]
gi|393065632|gb|EJB66460.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-44]
Length = 491
Score = 205 bits (522), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 207/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ ++ Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMHLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 100 bits (250), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ ++ Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMHLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|421717811|ref|ZP_16157112.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R038b]
gi|407222603|gb|EKE92401.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R038b]
Length = 492
Score = 205 bits (522), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 207/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ ++ Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMHLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 101 bits (251), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ ++ Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMHLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|224089124|ref|XP_002308641.1| predicted protein [Populus trichocarpa]
gi|222854617|gb|EEE92164.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 205 bits (522), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 141/457 (30%), Positives = 228/457 (49%), Gaps = 70/457 (15%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ I E ++ A + G+K PTKIQ +P AL KD++ A+TGSGKT AF +P
Sbjct: 12 FADLGICEQLVEACERLGWKNPTKIQVEAIPHALEG-KDLIALAQTGSGKTAAFALP--- 67
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
L+ L + S + YA +L+PTRELA
Sbjct: 68 -------------------------TLQALLQASVTSVPV-------FYACVLSPTRELA 95
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
IQ+ G ++ A +VGG+ Q L K PHI+V TPGRL + L +
Sbjct: 96 IQIAEQFEALGSDIGLRCAVLVGGVDMGLQTIALAKRPHIVVGTPGRLLD--HLSNTKGF 153
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L + YL++DE DR++ E + LD + +T S+ R+T++FSAT+T
Sbjct: 154 SLRTLKYLILDEADRLLNE----EFEKSLDEI-LTVISRDRKTYLFSATMT--------- 199
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
KKV ++LQ +++P +++ K + +TL + + C K+ YL
Sbjct: 200 -------KKV-------RKLQRAC-LRNPVKIEVASKYSVVETLRQQLLFCPAKYKECYL 244
Query: 1070 YYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ + L+ T+VF + + L +L L +P++ M+Q +RL L++F+
Sbjct: 245 VHALTLKSGASTMVFTRTCDATHFLALVLRNLGLRAIPINGHMSQSKRLGALNKFKAGEC 304
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+IL+ TDVA+RGLDIP ++ V++Y +P S+ YIHR GRTARA GL + L+ +EI
Sbjct: 305 NILICTDVASRGLDIPSVDMVVNYDIPTNSKDYIHRVGRTARAGRSGLAISLVNQNEIGW 364
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
+ ++ N + + + D + + L+ +R+ AK I
Sbjct: 365 FKQIENLI--GIRMSDIRPHQEEIMLLLERVTEAKRI 399
Score = 162 bits (411), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 211/501 (42%), Gaps = 150/501 (29%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ I E ++ A + G+K PTKIQ +P AL KD++ A+TGSGKT AF +P
Sbjct: 12 FADLGICEQLVEACERLGWKNPTKIQVEAIPHALEG-KDLIALAQTGSGKTAAFALP--- 67
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
L+ L + S + YA +L+PTRELA
Sbjct: 68 -------------------------TLQALLQASVTSVPV-------FYACVLSPTRELA 95
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
IQ+ G ++ A +VGG+ Q L K PHI+V TPGRL + L +
Sbjct: 96 IQIAEQFEALGSDIGLRCAVLVGGVDMGLQTIALAKRPHIVVGTPGRLLD--HLSNTKGF 153
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L + YL++DE DR++ E + LD +
Sbjct: 154 SLRTLKYLILDEADRLLNE----EFEKSLDEI---------------------------- 181
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
+T S+ R+T++FSAT+T KKV ++LQ +++P +
Sbjct: 182 -LTVISRDRKTYLFSATMT----------------KKV-------RKLQRAC-LRNPVKI 216
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
++ K + +TL + + C K+ YL + + G
Sbjct: 217 EVASKYSVVETLRQQLLFCPAKYKECYLVHALTLKSG---------------------AS 255
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
+ T+T + L +L++ G L+ P+
Sbjct: 256 TMVFTRTCDATHFLA-----------LVLRNLG---------------------LRAIPI 283
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
H M+Q +RL L++F+ +IL+ TDVA+RGLDIP ++ V++Y +P S+ YIHR
Sbjct: 284 NGH--MSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVVNYDIPTNSKDYIHRV 341
Query: 633 GRTARANNEGLTVVLIESDEI 653
GRTARA GL + L+ +EI
Sbjct: 342 GRTARAGRSGLAISLVNQNEI 362
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A +L+PTRELAIQ+ G ++ A +VGG+ Q L K PHI+V TPG L
Sbjct: 85 ACVLSPTRELAIQIAEQFEALGSDIGLRCAVLVGGVDMGLQTIALAKRPHIVVGTPGRL 143
>gi|210134447|ref|YP_002300886.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
gi|210132415|gb|ACJ07406.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
Length = 492
Score = 205 bits (522), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 207/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ ++ Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMHLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 101 bits (251), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ ++ Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMHLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|238484285|ref|XP_002373381.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|317140428|ref|XP_001818181.2| ATP-dependent RNA helicase drs1 [Aspergillus oryzae RIB40]
gi|91206589|sp|Q2UQI6.2|DRS1_ASPOR RecName: Full=ATP-dependent RNA helicase drs1
gi|220701431|gb|EED57769.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|391871961|gb|EIT81110.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 820
Score = 205 bits (522), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 136/413 (32%), Positives = 199/413 (48%), Gaps = 72/413 (17%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+FN+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL +
Sbjct: 306 EFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERL 364
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+ F + IL PTRELA+Q
Sbjct: 365 L------------------------------------FRPRKVPTSRVAILMPTRELAVQ 388
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
N YT + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 389 CYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDT 448
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+I LV+DE DRM+E G EL IL T + RQT +FSAT+T S+ + +
Sbjct: 449 LEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDSVDKLIRV-- 499
Query: 1012 GQSKSKKV---SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
G ++ ++ SK + S+ +Q+ + ++ + D++ Y
Sbjct: 500 GLNRPVRLMVDSKKNTSMNLIQEFVRLRP----------------------GREDKRLGY 537
Query: 1069 LYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L + + + GR +VF R+ +L LH SM+Q QR+++++ FR+
Sbjct: 538 LLHLCKEVYTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGK 597
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
S LLATD+AARGLDI G+E VI+Y P++ EIY+HR GRTARA G +
Sbjct: 598 VSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI 650
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 109/240 (45%), Gaps = 44/240 (18%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+FN+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL +
Sbjct: 306 EFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERL 364
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+ F + IL PTRELA+Q
Sbjct: 365 L------------------------------------FRPRKVPTSRVAILMPTRELAVQ 388
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
N YT + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 389 CYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDT 448
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+I LV+DE DRM+E G EL IL T + RQTM+ S + + L RV +
Sbjct: 449 LEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDSVDKLIRVGL 501
Score = 104 bits (260), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 528 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ D++ YL + + + GR +VF R+ +L LH SM+Q QR+++
Sbjct: 530 REDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRS 589
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
++ FR+ S LLATD+AARGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 590 VENFREGKVSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACT 649
Query: 647 L 647
+
Sbjct: 650 I 650
Score = 54.3 bits (129), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F R + S A IL PTRELA+Q N YT + +VGG S +Q IL K
Sbjct: 364 LLFRPRKVPTSRVA-ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 422
Query: 1403 CPHILVATPG 1412
P +++ATPG
Sbjct: 423 RPDVIIATPG 432
>gi|188527054|ref|YP_001909741.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
gi|384893855|ref|YP_005767904.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464]
gi|188143294|gb|ACD47711.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
gi|308063109|gb|ADO04996.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464]
Length = 492
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ K++L + P
Sbjct: 377 DSKIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLI 648
+ L+
Sbjct: 358 ITLV 361
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|384890631|ref|YP_005764764.1| cold-shock DEAD-box protein A [Helicobacter pylori 908]
gi|307636940|gb|ADN79390.1| cold-shock DEAD-box protein A [Helicobacter pylori 908]
Length = 491
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ KH+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINKHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 101 bits (251), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ KH+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINKHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|242782113|ref|XP_002479938.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
gi|218720085|gb|EED19504.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
Length = 478
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 136/445 (30%), Positives = 219/445 (49%), Gaps = 95/445 (21%)
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL +++K +
Sbjct: 71 GYKAPTAIQTEAIPLALQNR-DLIGLAETGSGKTAAFALPILQALMDKPQ---------- 119
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
+ L+LAPTRELA Q+ G V+
Sbjct: 120 -----------------------------PFFGLVLAPTRELAYQISEAFEALGSTISVR 150
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETD 963
+VGGM Q + K PHI+VATPGRL L H T+ L + YLV+DE D
Sbjct: 151 SVVLVGGMDMVPQAIAIGKRPHIIVATPGRL-----LDHLENTKGFSLRSLKYLVMDEAD 205
Query: 964 RMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH--------SLKNSLNLKKGQSK 1015
R+++ P I+D++ + + R+TF+FSAT++ SL N L + +K
Sbjct: 206 RLLDMDFGP----IIDKI-LKVLPRERRTFLFSATMSSKVEGLQRASLSNPLRVSVSSNK 260
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 1075
+ VS TL + + H KD +L + + +
Sbjct: 261 YQTVS-------------------------------TLLQYYLFIPHKHKDVHLIWLLNE 289
Query: 1076 HPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
H G++ ++F ++ RLT L L + LH ++Q RL L +FR ++ IL+AT
Sbjct: 290 HVGQSVIIFTRTVHETMRLTILARALGFGAIALHGQLSQSARLGALGKFRSRSRDILIAT 349
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDIP ++ V++Y + S+ ++HR GRTARA G + L+ ++ +++++
Sbjct: 350 DVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVWLRIEK 409
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRI 1219
+L++K LP++ +++ + ++ R+
Sbjct: 410 ALDRK--LPEYKVEKEEVLILSDRV 432
Score = 163 bits (413), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 136/490 (27%), Positives = 198/490 (40%), Gaps = 175/490 (35%)
Query: 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229
G+K PT IQ+ +P AL R D++G AETGSGKT AF +PIL +++K +
Sbjct: 71 GYKAPTAIQTEAIPLALQNR-DLIGLAETGSGKTAAFALPILQALMDKPQ---------- 119
Query: 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 289
+ L+LAPTRELA Q+ G V+
Sbjct: 120 -----------------------------PFFGLVLAPTRELAYQISEAFEALGSTISVR 150
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYKINYLVIDETD 346
+VGGM Q + K PHI+VATPGRL L H T+ L + YLV+DE D
Sbjct: 151 SVVLVGGMDMVPQAIAIGKRPHIIVATPGRL-----LDHLENTKGFSLRSLKYLVMDEAD 205
Query: 347 RMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406
R+++ P + IL + PR+ R+TF+F
Sbjct: 206 RLLDMDFGPIIDKILKVL-------PRE--------------------------RRTFLF 232
Query: 407 SATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458
SAT++ SL N L + +K + VS
Sbjct: 233 SATMSSKVEGLQRASLSNPLRVSVSSNKYQTVS--------------------------- 265
Query: 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITK 518
TL + + H KD +L + + +H G+++ I T+
Sbjct: 266 ----TLLQYYLFIPHKHKDVHLIWLLNEHVGQSV---------------------IIFTR 300
Query: 519 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 578
T+ E+ RLT L L + LH +
Sbjct: 301 TVHET----------------------------------MRLTILARALGFGAIALHGQL 326
Query: 579 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638
+Q RL L +FR ++ IL+ATDVAARGLDIP ++ V++Y + S+ ++HR GRTARA
Sbjct: 327 SQSARLGALGKFRSRSRDILIATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARA 386
Query: 639 NNEGLTVVLI 648
G + L+
Sbjct: 387 GKSGKAISLV 396
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
L+LAPTRELA Q+ G V+ +VGGM Q + K PHI+VATPG L
Sbjct: 123 GLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRPHIIVATPGRLL 182
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI--IIDDENLIQPKANSRENA 1468
+ K L +S++YL + D L DMD IID + P+ R
Sbjct: 183 DHLENTKGFSL-RSLKYL----VMDEADRLL-----DMDFGPIIDKILKVLPR--ERRTF 230
Query: 1469 LMSKALVSKRKELQ 1482
L S + SK + LQ
Sbjct: 231 LFSATMSSKVEGLQ 244
>gi|392578929|gb|EIW72056.1| hypothetical protein TREMEDRAFT_41472 [Tremella mesenterica DSM 1558]
Length = 491
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/458 (31%), Positives = 231/458 (50%), Gaps = 75/458 (16%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
IPE + ++ FK PT IQ +PSAL R D++G A+TGSGKT AF +PIL +
Sbjct: 54 IPE-LCQSCATLAFKAPTPIQVEAIPSALQGR-DVIGLAQTGSGKTAAFSLPILQKL--- 108
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
ENP +ALILAPTRELA Q+
Sbjct: 109 WENP------------------------------------QPFFALILAPTRELAYQISQ 132
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
+ G V+ A +VGGM Q L+K PH++VATPGRL + ++ + L +
Sbjct: 133 QVTSLGSPLGVRTAVIVGGMDMMSQSIALSKRPHVIVATPGRLMDHLE--NTKGFSLKNV 190
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
+LV+DE DR+++ P + IL + + R T++FSAT+T
Sbjct: 191 KFLVMDEADRLLDMDFGPIIDKILKVI-----PKERNTYLFSATMT-------------- 231
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
KV+K ++R ++ P V++ K TL + +L KD++L Y +
Sbjct: 232 --TKVAK----LQRA----SLNKPVRVEVATKYSTVSTLLQHYLLLPLKAKDTHLLYIVT 281
Query: 1075 QHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+ +++ F ++ +RL+ +L L +PLH M+Q RL +L++F+ SIL+A
Sbjct: 282 ELSSCSMIIFTRTVVDAQRLSIMLRRLGFPAIPLHGQMSQSLRLASLNKFKSGGRSILVA 341
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVA+RGLDIP ++ V++Y +P S+ Y+HR GRTARA G ++ ++ ++ + ++
Sbjct: 342 TDVASRGLDIPLVDLVVNYDMPINSKDYVHRVGRTARAGRSGKSITMVTQYDVEILQRIE 401
Query: 1194 NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ KK++ +F +D+ ++ + + A LE +
Sbjct: 402 AHIGKKME--NFAVDKEAVAAFSETVARANREAALEMR 437
Score = 110 bits (275), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 100/204 (49%), Gaps = 43/204 (21%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
IPE + ++ FK PT IQ +PSAL R D++G A+TGSGKT AF +PIL +
Sbjct: 54 IPE-LCQSCATLAFKAPTPIQVEAIPSALQGR-DVIGLAQTGSGKTAAFSLPILQKL--- 108
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
ENP +ALILAPTRELA Q+
Sbjct: 109 WENP------------------------------------QPFFALILAPTRELAYQISQ 132
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
+ G V+ A +VGGM Q L+K PH++VATPGRL + ++ + L +
Sbjct: 133 QVTSLGSPLGVRTAVIVGGMDMMSQSIALSKRPHVIVATPGRLMDHLE--NTKGFSLKNV 190
Query: 338 NYLVIDETDRMIESGHFPELKNIL 361
+LV+DE DR+++ P + IL
Sbjct: 191 KFLVMDEADRLLDMDFGPIIDKIL 214
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 137/256 (53%), Gaps = 18/256 (7%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
S+K ++ L+ ++ +++D+ I K L K++ K E+++YL+ T+ +
Sbjct: 186 SLKNVKFLVMDEADRLLDMDFGPIIDKIL---KVIPK--ERNTYLF-------SATMTTK 233
Query: 496 IQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCN 552
+ L ++ P V++ K TL + +L KD++L Y + + +++ F
Sbjct: 234 VAKLQRASLNKPVRVEVATKYSTVSTLLQHYLLLPLKAKDTHLLYIVTELSSCSMIIFTR 293
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
++ +RL+ +L L +PLH M+Q RL +L++F+ SIL+ATDVA+RGLDIP
Sbjct: 294 TVVDAQRLSIMLRRLGFPAIPLHGQMSQSLRLASLNKFKSGGRSILVATDVASRGLDIPL 353
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEER 672
++ V++Y +P S+ Y+HR GRTARA G ++ ++ ++ + + E ++ E
Sbjct: 354 VDLVVNYDMPINSKDYVHRVGRTARAGRSGKSITMVTQYDVEILQRI---EAHIGKKMEN 410
Query: 673 AEADKEKTEDINVTVS 688
DKE + TV+
Sbjct: 411 FAVDKEAVAAFSETVA 426
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALILAPTRELA Q+ + G V+ A +VGGM Q L+K PH++VATPG L
Sbjct: 117 ALILAPTRELAYQISQQVTSLGSPLGVRTAVIVGGMDMMSQSIALSKRPHVIVATPGRL 175
>gi|119494918|ref|XP_001264258.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
gi|142982588|sp|A1D1R8.1|DRS1_NEOFI RecName: Full=ATP-dependent RNA helicase drs1
gi|119412420|gb|EAW22361.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
Length = 819
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 139/412 (33%), Positives = 200/412 (48%), Gaps = 72/412 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
FN+ I+R L F TPT IQ +P ALL KDIVG+A TGSGKT AF +PIL
Sbjct: 304 FNLSRPILRGLASVNFTTPTPIQQKTIPVALLG-KDIVGSAVTGSGKTAAFVVPIL---- 358
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
E +L F + IL PTRELA+Q
Sbjct: 359 --------------------ERLL------------FRPRKVPTSRVAILMPTRELAVQC 386
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
N +T + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 387 YNVATKLATHTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTL 446
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+I LV+DE DRM+E G EL IL T Q RQT +FSAT+T S+ + + G
Sbjct: 447 EI--LVLDEADRMLEDGFADELNEIL-----TTIPQSRQTMLFSATMTDSVDKLIRV--G 497
Query: 1013 QSKSKKV---SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
++ ++ SK + S+ Q+ + ++ + D++ YL
Sbjct: 498 LNRPVRLMVDSKKNTSMNLTQEFVRLRP----------------------GREDKRLGYL 535
Query: 1070 YYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + + GR +VF R+ + +L LH SM+Q QR+K+++ FR+
Sbjct: 536 LYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGKV 595
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G +
Sbjct: 596 AFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI 647
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 110/239 (46%), Gaps = 44/239 (18%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
FN+ I+R L F TPT IQ +P ALL KDIVG+A TGSGKT AF +PIL
Sbjct: 304 FNLSRPILRGLASVNFTTPTPIQQKTIPVALLG-KDIVGSAVTGSGKTAAFVVPIL---- 358
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
E +L F + IL PTRELA+Q
Sbjct: 359 --------------------ERLL------------FRPRKVPTSRVAILMPTRELAVQC 386
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
N +T + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 387 YNVATKLATHTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTL 446
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+I LV+DE DRM+E G EL IL T Q RQTM+ S + + L RV +
Sbjct: 447 EI--LVLDEADRMLEDGFADELNEIL-----TTIPQSRQTMLFSATMTDSVDKLIRVGL 498
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 528 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ D++ YL Y + + GR +VF R+ + +L LH SM+Q QR+K+
Sbjct: 527 REDKRLGYLLYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKS 586
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
++ FR+ + LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 587 VENFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACT 646
Query: 647 L 647
+
Sbjct: 647 I 647
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F R + S A IL PTRELA+Q N +T + +VGG S +Q IL K
Sbjct: 361 LLFRPRKVPTSRVA-ILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKK 419
Query: 1403 CPHILVATPG 1412
P +++ATPG
Sbjct: 420 RPDVIIATPG 429
>gi|160331647|ref|XP_001712530.1| rrp3 [Hemiselmis andersenii]
gi|159765979|gb|ABW98205.1| rrp3 [Hemiselmis andersenii]
Length = 398
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 144/471 (30%), Positives = 231/471 (49%), Gaps = 75/471 (15%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + K I + + R F PTKIQ+ V+P AL R DI+G A+TGSGKT+A+ +P
Sbjct: 1 MFSFDKLGISKELCRICKANNFFIPTKIQAKVIPHALNGR-DIIGYAQTGSGKTIAYLLP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
I+ +V K + +++IL P+R
Sbjct: 60 IIQNLVKK---------------------------------------KTAFFSIILVPSR 80
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA Q+ ++ G +K+ +VGG+ Q +L+ PHIL+ TPGRL E L F
Sbjct: 81 ELAFQIASYFEAFGNIFGIKIVVLVGGLENFSQKALLSLNPHILICTPGRLIE--HLEKF 138
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
++ K+ LVIDE DR+ + E + +E + +Q+ FSAT+ S
Sbjct: 139 LKNKIKKLEILVIDEADRLFQLDFKKEFS-----IIFSELPKNKQSLFFSATM------S 187
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
LNL+ Q N+K+P + + K + KTL ++ I KD
Sbjct: 188 LNLENLQKN------------------NMKNPVKIQINRKYKVVKTLQQNYIFIPQKLKD 229
Query: 1067 SYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
Y Y + G + LVF ++ ++ T L L + LH MNQ +RL+ L +FR
Sbjct: 230 CYFIYLCNEFNGSSILVFVDTQKCAEKKTLLAKFLGFNAEYLHGGMNQNKRLEILQKFRF 289
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
IL+ATD+A+RGLDIP ++ V++Y +P ++ Y+HR GRTARA G T+ ++ +
Sbjct: 290 GKIKILIATDLASRGLDIPNVDLVLNYDLPHLAKEYLHRVGRTARAGKSGRTINIVTQYD 349
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID-LAKSIEYLESKIKKN 1235
I L K+ +++K L +F + + ++++ +D + + + +L S KKN
Sbjct: 350 IHLCQKIETLVQQKFILLNFKLAHVL--ILEQTVDKMKQKVNFLISSFKKN 398
Score = 171 bits (432), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 137/509 (26%), Positives = 207/509 (40%), Gaps = 154/509 (30%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + K I + + R F PTKIQ+ V+P AL R DI+G A+TGSGKT+A+ +P
Sbjct: 1 MFSFDKLGISKELCRICKANNFFIPTKIQAKVIPHALNGR-DIIGYAQTGSGKTIAYLLP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
I+ +V K + +++IL P+R
Sbjct: 60 IIQNLVKK---------------------------------------KTAFFSIILVPSR 80
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA Q+ ++ G +K+ +VGG+ Q +L+ PHIL+ TPGRL E L F
Sbjct: 81 ELAFQIASYFEAFGNIFGIKIVVLVGGLENFSQKALLSLNPHILICTPGRLIE--HLEKF 138
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
++ K+ LVIDE DR+ + E
Sbjct: 139 LKNKIKKLEILVIDEADRLFQLDFKKEFS------------------------------- 167
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 449
+ +E + +Q+ FSAT+ SLNL+ Q N+K+P
Sbjct: 168 --IIFSELPKNKQSLFFSATM------SLNLENLQKN------------------NMKNP 201
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVD 509
+ + K + KTL ++ I KD Y Y LC E
Sbjct: 202 VKIQINRKYKVVKTLQQNYIFIPQKLKDCYFIY---------LCNEF------------- 239
Query: 510 LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
+ LVF ++ ++ T L L
Sbjct: 240 ---------------------------------NGSSILVFVDTQKCAEKKTLLAKFLGF 266
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+ LH MNQ +RL+ L +FR IL+ATD+A+RGLDIP ++ V++Y +P ++ Y+
Sbjct: 267 NAEYLHGGMNQNKRLEILQKFRFGKIKILIATDLASRGLDIPNVDLVLNYDLPHLAKEYL 326
Query: 630 HRSGRTARANNEGLTVVLIESDEIPLKTK 658
HR GRTARA G T+ ++ +I L K
Sbjct: 327 HRVGRTARAGKSGRTINIVTQYDIHLCQK 355
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 19/103 (18%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
++ ++IL P+RELA Q+ ++ G +K+ +VGG+ Q +L+ PHIL+ TPG
Sbjct: 70 AFFSIILVPSRELAFQIASYFEAFGNIFGIKIVVLVGGLENFSQKALLSLNPHILICTPG 129
Query: 1413 ALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE 1455
L IE+LE +L+ K ++I++ DE
Sbjct: 130 RL----------IEHLEK---------FLKNKIKKLEILVIDE 153
>gi|387907613|ref|YP_006337947.1| ATP-dependent RNA helicase [Helicobacter pylori XZ274]
gi|387572548|gb|AFJ81256.1| ATP-dependent RNA helicase [Helicobacter pylori XZ274]
Length = 492
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 207/434 (47%), Gaps = 72/434 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKSPQVMIATPGRLLDHLKNERIHK---F 160
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP---------- 205
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
IKRL D + KI I T ++ +H+ ++ +
Sbjct: 206 -------------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL 252
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
Q P +++VF + L Q L LH M+QR R ++ F+ + +L+
Sbjct: 253 DTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLV 312
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M
Sbjct: 313 ATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRM 372
Query: 1193 FNSLEKKVDLPDFP 1206
++ +++L + P
Sbjct: 373 QKEIDSEIELFEIP 386
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 50/238 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKSPQVMIATPGRLLDHLKNERIH---KF 160
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 70.1 bits (170), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKSPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
19718]
gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
19718]
Length = 498
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 213/417 (51%), Gaps = 65/417 (15%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + I+ A+ +G+ PT IQ+ V+PS +LA KD++ +A+TG+GKT F +P+L
Sbjct: 7 FAQLGLSSEILHAVNDEGYVNPTPIQAQVIPS-ILAGKDVMASAQTGTGKTAGFTLPLLY 65
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ + ANT+ V R+ + ALI+APTRELA
Sbjct: 66 RL-----------------------------QAYANTS--VSPARHPVRALIMAPTRELA 94
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q+ + GKY ++ A V GG++ E Q+ L ILVATPGRL + ++ + +
Sbjct: 95 MQIDESVRKYGKYLALRTAVVFGGINIEPQIAALQAGVEILVATPGRLLDLVEQKAVNFS 154
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
K LV+DE DRM++ G P++K + M S RQ+ +FSAT +
Sbjct: 155 ---KTEILVLDEADRMLDMGFLPDIKRV-----MALLSPQRQSLMFSATFS--------- 197
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
G+ I++L D L +K P ++ + + ++++ K D K + L
Sbjct: 198 ------------GE--IRKLADSL-LKQPVRIEAAVQNTVNESISHVIHWVKPDSKFALL 242
Query: 1070 YYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ I Q + L+F + L Q+L+ + S + +H NQ+QR + L F+ +
Sbjct: 243 LHLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGDV 302
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
IL+ATDVAARG+DI + HVI+Y +P E Y+HR GRT RA ++G + L+ E
Sbjct: 303 QILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHE 359
Score = 124 bits (310), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 125/239 (52%), Gaps = 41/239 (17%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + I+ A+ +G+ PT IQ+ V+PS +LA KD++ +A+TG+GKT F +P+L
Sbjct: 7 FAQLGLSSEILHAVNDEGYVNPTPIQAQVIPS-ILAGKDVMASAQTGTGKTAGFTLPLLY 65
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ + ANT+ V R+ + ALI+APTRELA
Sbjct: 66 RL-----------------------------QAYANTS--VSPARHPVRALIMAPTRELA 94
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q+ + GKY ++ A V GG++ E Q+ L ILVATPGRL + ++ + +
Sbjct: 95 MQIDESVRKYGKYLALRTAVVFGGINIEPQIAALQAGVEILVATPGRLLDLVEQKAVNFS 154
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNILD 390
K LV+DE DRM++ G P++K + M S RQ+++ S F E++ + D
Sbjct: 155 ---KTEILVLDEADRMLDMGFLPDIKRV-----MALLSPQRQSLMFSATFSGEIRKLAD 205
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 25/241 (10%)
Query: 434 DPSIKRLQ---DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL---------Y 481
+P I LQ ++L +++DL E+ + + TE +L DE D L
Sbjct: 122 EPQIAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVL---DEADRMLDMGFLPDIKR 178
Query: 482 YFILQHPGR-------TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEK 532
L P R T EI+ L + +K P ++ + + ++++ K D K
Sbjct: 179 VMALLSPQRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSK 238
Query: 533 DSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 591
+ L + I Q + L+F + L Q+L+ + S + +H NQ+QR + L F+
Sbjct: 239 FALLLHLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFK 298
Query: 592 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651
+ IL+ATDVAARG+DI + HVI+Y +P E Y+HR GRT RA ++G + L+
Sbjct: 299 HGDVQILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEH 358
Query: 652 E 652
E
Sbjct: 359 E 359
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 13/144 (9%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ ALI+APTRELA+Q+ + GKY ++ A V GG++ E Q+ L ILVAT
Sbjct: 79 RHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQIAALQAGVEILVAT 138
Query: 1411 PGALSLKRIDLA--KSIEYLESKI-KKNRPDNWLEKAAKDMDIIIDDENLIQPKANSREN 1467
PG L +DL K++ + +++I + D L DM + D + ++ + R++
Sbjct: 139 PGRL----LDLVEQKAVNFSKTEILVLDEADRML-----DMGFLPDIKRVMALLSPQRQS 189
Query: 1468 ALMSKALVSK-RKELQSLLGKSVQ 1490
+ S + RK SLL + V+
Sbjct: 190 LMFSATFSGEIRKLADSLLKQPVR 213
>gi|386752257|ref|YP_006225476.1| ATP-dependent RNA helicase [Helicobacter pylori Shi169]
gi|384558515|gb|AFH98982.1| ATP-dependent RNA helicase [Helicobacter pylori Shi169]
Length = 492
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQV 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ K++L + P
Sbjct: 377 DSKIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQVPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLI 648
+ L+
Sbjct: 358 ITLV 361
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|313228985|emb|CBY18137.1| unnamed protein product [Oikopleura dioica]
Length = 451
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 140/477 (29%), Positives = 229/477 (48%), Gaps = 76/477 (15%)
Query: 759 NNEDMFV--QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
N E+ F + W + + + + + PT IQ +P A+ KD++G AETG
Sbjct: 13 NQEEEFTLEGLEAWQSLGVCDEVAQTCVDLKWSKPTPIQQKSIPIAIEG-KDVIGLAETG 71
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
SGKT AF IP+L + L+ P +
Sbjct: 72 SGKTAAFAIPVLQTL---LKTPGG----------------------------------GR 94
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L L++ PTRELA Q++ G + AC+VGG+ Q L K PH++VATPGR
Sbjct: 95 LSCLVMTPTRELAFQIREQFQALGSSIGLSCACIVGGIEMMSQQLALAKKPHVIVATPGR 154
Query: 937 LWEFIQLGH-FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L + ++ F+L L +L++DE DR++ E+ IL + + RQT +F
Sbjct: 155 LVDHLEKTRGFNLKAL---KFLIMDEADRILNLDFEAEVDKILRAI-----PRERQTMLF 206
Query: 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
SAT+T +K KK+ + +K+P + + K +
Sbjct: 207 SATMT-------------AKVKKLQRA-----------ALKNPVKISINSKYKTVDKNIQ 242
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ K+ YL + + G + ++F ++ + + +L+ L +PLH M+Q+
Sbjct: 243 KYMFIPEAHKECYLVSLLNELQGSSFMIFTSTCAKTSLIARLVKRLGYDSVPLHGQMSQQ 302
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
+RL L RF+ ++ SIL+ TDVA+RGLD+P ++ VI+Y VP ++ YIHR GRTARA
Sbjct: 303 KRLGALARFKGKSRSILVCTDVASRGLDVPHVDCVINYDVPTNTKDYIHRVGRTARAGRA 362
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
G ++ + ++ LY K+ + KK+D +P ++ + +K+R+D AK I E K
Sbjct: 363 GKSVTFVSQYDVELYQKIEAHIGKKLD--QWPCEKDEVMALKERVDEAKRIAVQEIK 417
Score = 101 bits (251), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Query: 532 KDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 590
K+ YL + + G + ++F ++ + + +L+ L +PLH M+Q++RL L RF
Sbjct: 252 KECYLVSLLNELQGSSFMIFTSTCAKTSLIARLVKRLGYDSVPLHGQMSQQKRLGALARF 311
Query: 591 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIES 650
+ ++ SIL+ TDVA+RGLD+P ++ VI+Y VP ++ YIHR GRTARA G +V +
Sbjct: 312 KGKSRSILVCTDVASRGLDVPHVDCVINYDVPTNTKDYIHRVGRTARAGRAGKSVTFVSQ 371
Query: 651 DEIPLKTKF 659
++ L K
Sbjct: 372 YDVELYQKI 380
Score = 100 bits (248), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 116/277 (41%), Gaps = 77/277 (27%)
Query: 142 NNEDMFV--QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
N E+ F + W + + + + + PT IQ +P A+ KD++G AETG
Sbjct: 13 NQEEEFTLEGLEAWQSLGVCDEVAQTCVDLKWSKPTPIQQKSIPIAIEG-KDVIGLAETG 71
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
SGKT AF IP+L + L+ P +
Sbjct: 72 SGKTAAFAIPVLQTL---LKTPGG----------------------------------GR 94
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L L++ PTRELA Q++ G + AC+VGG+ Q L K PH++VATPGR
Sbjct: 95 LSCLVMTPTRELAFQIREQFQALGSSIGLSCACIVGGIEMMSQQLALAKKPHVIVATPGR 154
Query: 320 LWEFIQLGH-FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
L + ++ F+L L +L++DE DR++ E+ IL + PR+
Sbjct: 155 LVDHLEKTRGFNLKAL---KFLIMDEADRILNLDFEAEVDKILRAI-------PRE---- 200
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 415
RQT +FSAT+T +K
Sbjct: 201 ----------------------RQTMLFSATMTAKVK 215
Score = 57.0 bits (136), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 23/136 (16%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
L++ PTRELA Q++ G + AC+VGG+ Q L K PH++VATPG L
Sbjct: 97 CLVMTPTRELAFQIREQFQALGSSIGLSCACIVGGIEMMSQQLALAKKPHVIVATPGRL- 155
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNW-------LEKAAK--DMDIIIDDENLIQPKANSRE 1466
+++LE K R N +++A + ++D + + +++ R+
Sbjct: 156 ---------VDHLE----KTRGFNLKALKFLIMDEADRILNLDFEAEVDKILRAIPRERQ 202
Query: 1467 NALMSKALVSKRKELQ 1482
L S + +K K+LQ
Sbjct: 203 TMLFSATMTAKVKKLQ 218
Score = 46.2 bits (108), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 1225 IEYLESKIKKNRPDN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1281
+ +++ I + P N ++HR GRTARA G ++ + ++ LY K+ + KK+D
Sbjct: 331 VPHVDCVINYDVPTNTKDYIHRVGRTARAGRAGKSVTFVSQYDVELYQKIEAHIGKKLD- 389
Query: 1282 PDFPIDESVLSLIKKRIDLAKSIEYLESK 1310
+P ++ + +K+R+D AK I E K
Sbjct: 390 -QWPCEKDEVMALKERVDEAKRIAVQEIK 417
>gi|308182422|ref|YP_003926549.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
gi|308064607|gb|ADO06499.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
Length = 492
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/437 (28%), Positives = 212/437 (48%), Gaps = 86/437 (19%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK-------ILCKHDEKDSYL 1069
IKRL D KI++ KI I + T + ++ +H+ ++ +
Sbjct: 206 ---------IKRLAD-------KILENPIKIHIAPSNTTNTDITQRFYVINEHERAEAIM 249
Query: 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129
+ Q P +++VF + L Q L LH M+QR R ++ F+ +
Sbjct: 250 HLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDAD 309
Query: 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLY 1189
+L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E
Sbjct: 310 VLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKEL 369
Query: 1190 IKMFNSLEKKVDLPDFP 1206
++M ++ +++L + P
Sbjct: 370 LRMQKEIDSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 101 bits (251), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ ++ Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMHLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|83766036|dbj|BAE56179.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 856
Score = 204 bits (520), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 137/409 (33%), Positives = 199/409 (48%), Gaps = 74/409 (18%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+FN+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL +
Sbjct: 342 EFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERL 400
Query: 832 VNKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAI 890
+ + PT IL PTRELA+
Sbjct: 401 LFRPRKVPTSR-------------------------------------VAILMPTRELAV 423
Query: 891 QVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950
Q N YT + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 424 QCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVD 483
Query: 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLK 1010
+I LV+DE DRM+E G EL IL T + RQT +FSAT+T S+ + +
Sbjct: 484 TLEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDSVDKLIRV- 535
Query: 1011 KGQSKSKKV---SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
G ++ ++ SK + S+ +Q+ + ++ + D++
Sbjct: 536 -GLNRPVRLMVDSKKNTSMNLIQEFVRLRP----------------------GREDKRLG 572
Query: 1068 YLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
YL + + + GR +VF R+ +L LH SM+Q QR+++++ FR+
Sbjct: 573 YLLHLCKEVYTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREG 632
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
S LLATD+AARGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 633 KVSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSG 681
Score = 111 bits (277), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 110/241 (45%), Gaps = 46/241 (19%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+FN+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL +
Sbjct: 342 EFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERL 400
Query: 215 VNKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAI 273
+ + PT IL PTRELA+
Sbjct: 401 LFRPRKVPTSR-------------------------------------VAILMPTRELAV 423
Query: 274 QVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333
Q N YT + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 424 QCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVD 483
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
+I LV+DE DRM+E G EL IL T + RQTM+ S + + L RV
Sbjct: 484 TLEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDSVDKLIRVG 536
Query: 394 M 394
+
Sbjct: 537 L 537
Score = 104 bits (260), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 528 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ D++ YL + + + GR +VF R+ +L LH SM+Q QR+++
Sbjct: 566 REDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRS 625
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
++ FR+ S LLATD+AARGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 626 VENFREGKVSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACT 685
Query: 647 L 647
+
Sbjct: 686 I 686
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F R + S A IL PTRELA+Q N YT + +VGG S +Q IL K
Sbjct: 400 LLFRPRKVPTSRVA-ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 458
Query: 1403 CPHILVATPG 1412
P +++ATPG
Sbjct: 459 RPDVIIATPG 468
>gi|384888906|ref|YP_005763208.1| ATP-dependent RNA helicase [Helicobacter pylori v225d]
gi|297379472|gb|ADI34359.1| ATP-dependent RNA helicase [Helicobacter pylori v225d]
Length = 492
Score = 204 bits (520), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRVSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ K++L + P
Sbjct: 377 DSKIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 98.6 bits (244), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 VSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLI 648
+ L+
Sbjct: 358 ITLV 361
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|302833349|ref|XP_002948238.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f. nagariensis]
gi|300266458|gb|EFJ50645.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f. nagariensis]
Length = 836
Score = 204 bits (520), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 150/465 (32%), Positives = 231/465 (49%), Gaps = 80/465 (17%)
Query: 730 PHSKKLKQKKK---KKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQK 786
P K+L+ +++ K ++ S E + +S+ D+ N+ +++A+
Sbjct: 143 PQPKQLQGRQQNGGKAGSFYSDTPEGTKFSSSSFADL----------NLSRPLLKAVEAL 192
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G+KTPT IQ+ +P AL R DI G+A TGSGKT AF +P L
Sbjct: 193 GYKTPTPIQAACIPLALAGR-DICGSAVTGSGKTAAFALPFL------------------ 233
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
E +L +A Y L+L PTRELA+Q+ + I ++T V
Sbjct: 234 ------ERLLHRPRGLAAT------------YVLVLTPTRELAVQIHSMIEKLAQFTDVT 275
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966
VA +VGG+S Q L K P ++VATPGRL + ++ + L + LV+DE DR++
Sbjct: 276 VALIVGGLSLSVQAATLRKLPEVVVATPGRLIDHLR--NSQSVGLEDLAVLVLDEADRLL 333
Query: 967 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN--SLNLKKGQSKSKKVSKGDP 1024
E G E+ ++ + RQT +FSAT + +++ SL+LK+ + ++ P
Sbjct: 334 EMGFRDEVMEVVR-----CAPKKRQTMLFSATFSDQVRDLVSLSLKQPVRLAADAARAAP 388
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 1084
+ Q+++ +K P E + + LC GRT+VFC
Sbjct: 389 KLL-TQEIVRLKGPAAAATKEAVCVA--------LCSRSFSS-----------GRTIVFC 428
Query: 1085 NSISSVKRLTQLLTMLKCSPLP-LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
++ RL L + K P LH +M+Q RL++L+ FR + + LLATDVAARGLDI
Sbjct: 429 STKQRAHRLKILFGLAKLPPAAELHGNMSQTARLESLESFRRGDTAYLLATDVAARGLDI 488
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
G+E V++Y PR E Y+HR GRTARA G+ + L+E + PL
Sbjct: 489 QGVEVVVNYDAPRKLETYLHRIGRTARAGAAGVAVTLVEDGDRPL 533
Score = 114 bits (285), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 120/245 (48%), Gaps = 46/245 (18%)
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+ + N+ +++A+ G+KTPT IQ+ +P AL R DI G+A TGSGKT AF +P
Sbjct: 174 SSFADLNLSRPLLKAVEALGYKTPTPIQAACIPLALAGR-DICGSAVTGSGKTAAFALPF 232
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L E +L +A Y L+L PTRE
Sbjct: 233 L------------------------ERLLHRPRGLAAT------------YVLVLTPTRE 256
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q+ + I ++T V VA +VGG+S Q L K P ++VATPGRL + ++ +
Sbjct: 257 LAVQIHSMIEKLAQFTDVTVALIVGGLSLSVQAATLRKLPEVVVATPGRLIDHLR--NSQ 314
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + LV+DE DR++E G E+ ++ + RQTM+ S F + + D
Sbjct: 315 SVGLEDLAVLVLDEADRLLEMGFRDEVMEVVR-----CAPKKRQTMLFSATFSD--QVRD 367
Query: 391 RVTMT 395
V+++
Sbjct: 368 LVSLS 372
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLP-LHASMNQRQRLKNLDRFRDQNNSILLATDV 603
GRT+VFC++ RL L + K P LH +M+Q RL++L+ FR + + LLATDV
Sbjct: 422 GRTIVFCSTKQRAHRLKILFGLAKLPPAAELHGNMSQTARLESLESFRRGDTAYLLATDV 481
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
AARGLDI G+E V++Y PR E Y+HR GRTARA G+ V L+E + PL
Sbjct: 482 AARGLDIQGVEVVVNYDAPRKLETYLHRIGRTARAGAAGVAVTLVEDGDRPL 533
Score = 60.5 bits (145), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+ R L ++ L+L PTRELA+Q+ + I ++T V VA +VGG+S Q L K
Sbjct: 236 LLHRPRGLAATY-VLVLTPTRELAVQIHSMIEKLAQFTDVTVALIVGGLSLSVQAATLRK 294
Query: 1403 CPHILVATPGAL 1414
P ++VATPG L
Sbjct: 295 LPEVVVATPGRL 306
>gi|67517117|ref|XP_658442.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
gi|40746512|gb|EAA65668.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
Length = 1676
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 146/464 (31%), Positives = 220/464 (47%), Gaps = 79/464 (17%)
Query: 715 PDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN 774
PDD+ + E SD +++ K+K + K + T++ + F + FN
Sbjct: 746 PDDEAS---EPDSDAESEVDAEEEAKRKAFFAPEEKTDEDAATNSAKRSFQE------FN 796
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL ++ +
Sbjct: 797 LSRPILRGLAAVNFTNPTPIQQKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERLLFR 855
Query: 835 LEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
PT IL PTRELA+Q
Sbjct: 856 PRKVPTSR-------------------------------------VAILMPTRELAVQCY 878
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
N YT + +VGG S +Q +L K P +++ATPGR + ++ + +
Sbjct: 879 NVATKLATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLE 938
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 1013
I LV+DE DRM+E G EL IL T + RQT +FSAT+T S+ + + +
Sbjct: 939 I--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDSVDKLIRVGLNR 991
Query: 1014 SKSKKV-SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
V +K + ++ +Q+ + ++ + D++ YL +
Sbjct: 992 PVRLMVDTKKNTAVTLVQEFVRLRP----------------------GREDKRLGYLLHL 1029
Query: 1073 ILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + GR +VF R+ + +L LH SM+Q QR+K+++ FRD N + L
Sbjct: 1030 CKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFL 1089
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
LATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 1090 LATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSG 1133
Score = 113 bits (283), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 133/298 (44%), Gaps = 55/298 (18%)
Query: 98 PDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFN 157
PDD+ + E SD S +++ K+K + K + T++ + F + FN
Sbjct: 746 PDDEAS---EPDSDAESEVDAEEEAKRKAFFAPEEKTDEDAATNSAKRSFQE------FN 796
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL ++ +
Sbjct: 797 LSRPILRGLAAVNFTNPTPIQQKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERLLFR 855
Query: 218 LEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
PT IL PTRELA+Q
Sbjct: 856 PRKVPTSR-------------------------------------VAILMPTRELAVQCY 878
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
N YT + +VGG S +Q +L K P +++ATPGR + ++ + +
Sbjct: 879 NVATKLATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLE 938
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
I LV+DE DRM+E G EL IL T + RQTM+ S + + L RV +
Sbjct: 939 I--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDSVDKLIRVGL 989
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 528 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ D++ YL + + + GR +VF R+ + +L LH SM+Q QR+K+
Sbjct: 1018 REDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKS 1077
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
++ FRD N + LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 1078 VESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACT 1137
Query: 647 L 647
+
Sbjct: 1138 I 1138
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F R + S A IL PTRELA+Q N YT + +VGG S +Q +L K
Sbjct: 852 LLFRPRKVPTSRVA-ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKK 910
Query: 1403 CPHILVATPG 1412
P +++ATPG
Sbjct: 911 RPDVIIATPG 920
>gi|420470152|ref|ZP_14968863.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-11]
gi|393087198|gb|EJB87868.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-11]
Length = 492
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYRSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 100 bits (248), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYRSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|384899413|ref|YP_005774793.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
gi|317179357|dbj|BAJ57145.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
Length = 492
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 100 bits (248), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420416460|ref|ZP_14915569.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4044]
gi|393036889|gb|EJB37927.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4044]
Length = 491
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 207/434 (47%), Gaps = 72/434 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQERAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---F 160
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP---------- 205
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
IKRL D + KI I T ++ +H+ ++ +
Sbjct: 206 -------------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL 252
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
Q P +++VF + L Q L LH M+QR R ++ F+ + +L+
Sbjct: 253 DTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLV 312
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M
Sbjct: 313 ATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRM 372
Query: 1193 FNSLEKKVDLPDFP 1206
++ +++L + P
Sbjct: 373 QKEIDSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 50/238 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQERAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KF 160
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 100 bits (248), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 501
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 141/446 (31%), Positives = 220/446 (49%), Gaps = 68/446 (15%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + +I+ AL +G P IQ M +P AL D++G A TG+GKTLAFGIPIL
Sbjct: 18 FADLGVAPSIVTALDAEGITHPFPIQEMAIPIALTG-TDMIGQARTGTGKTLAFGIPILQ 76
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+V K +E ++L+ ++K AL+++PTRELA
Sbjct: 77 KVVLK-----------------TDEGFDQLD------------PKDKPQALVMSPTRELA 107
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
QV + + AG+ +V + GG+ + QL L K ++V TPGRL + + G+
Sbjct: 108 QQVGSDLAIAGRDRHARVLTIYGGVGYDDQLDALKKGVDVVVGTPGRLLDLVHRGNL--- 164
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+L + V+DE D M++ G P+++ +LDR T RQT +FSAT+ + ++L
Sbjct: 165 DLSHVRIAVLDEADEMLDLGFLPDVQALLDR-----TPASRQTMMFSATMPAVI---MSL 216
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
+ RL +NI++ T T I H+ +
Sbjct: 217 AR---------------SRLNQPVNIRAEG-----RDAQATVPQTTQFIYQAHELDKPEM 256
Query: 1070 YYFILQHPG--RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+LQ G + +VF + + +RL L LH +NQ QR K + RFR+
Sbjct: 257 IGKMLQSEGMRKMMVFTRTKRAAQRLADDLRDRGFEAASLHGDLNQSQREKTMKRFRNDK 316
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
+L+ATDVAARG+D+ + HV++Y VP E Y+HR GRT RA +EG+ + L++ ++
Sbjct: 317 IQVLVATDVAARGIDVDDVTHVVNYEVPDDPEQYVHRIGRTGRAGHEGVAVTLVDWQDVT 376
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLS 1213
+ K+ N K +DLP FP E+ S
Sbjct: 377 RW-KVIN---KALDLP-FPEIEATFS 397
Score = 122 bits (306), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 38/233 (16%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + +I+ AL +G P IQ M +P AL D++G A TG+GKTLAFGIPIL
Sbjct: 18 FADLGVAPSIVTALDAEGITHPFPIQEMAIPIALTG-TDMIGQARTGTGKTLAFGIPILQ 76
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+V K +E ++L+ ++K AL+++PTRELA
Sbjct: 77 KVVLK-----------------TDEGFDQLD------------PKDKPQALVMSPTRELA 107
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
QV + + AG+ +V + GG+ + QL L K ++V TPGRL + + G+
Sbjct: 108 QQVGSDLAIAGRDRHARVLTIYGGVGYDDQLDALKKGVDVVVGTPGRLLDLVHRGNL--- 164
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385
+L + V+DE D M++ G P+++ +LDR T RQTM+ S P +
Sbjct: 165 DLSHVRIAVLDEADEMLDLGFLPDVQALLDR-----TPASRQTMMFSATMPAV 212
Score = 95.1 bits (235), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 540 ILQHPG--RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597
+LQ G + +VF + + +RL L LH +NQ QR K + RFR+ +
Sbjct: 260 MLQSEGMRKMMVFTRTKRAAQRLADDLRDRGFEAASLHGDLNQSQREKTMKRFRNDKIQV 319
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
L+ATDVAARG+D+ + HV++Y VP E Y+HR GRT RA +EG+ V L++ ++
Sbjct: 320 LVATDVAARGIDVDDVTHVVNYEVPDDPEQYVHRIGRTGRAGHEGVAVTLVDWQDV 375
Score = 49.3 bits (116), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+++PTRELA QV + + AG+ +V + GG+ + QL L K ++V TPG L
Sbjct: 97 ALVMSPTRELAQQVGSDLAIAGRDRHARVLTIYGGVGYDDQLDALKKGVDVVVGTPGRL 155
>gi|420428271|ref|ZP_14927306.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-17]
gi|393045930|gb|EJB46910.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-17]
Length = 491
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 207/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF ++ L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNAESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 100 bits (248), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF ++ L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNAESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420419835|ref|ZP_14918923.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4161]
gi|393039201|gb|EJB40233.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4161]
Length = 491
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 207/434 (47%), Gaps = 72/434 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---F 160
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP---------- 205
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
IKRL D + KI I T ++ +H+ ++ +
Sbjct: 206 -------------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL 252
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
Q P +++VF + L Q L LH M+QR R ++ F+ + +L+
Sbjct: 253 DTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLV 312
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M
Sbjct: 313 ATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRM 372
Query: 1193 FNSLEKKVDLPDFP 1206
++ +++L + P
Sbjct: 373 QKEIDSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 50/238 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KF 160
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 100 bits (248), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|443917623|gb|ELU38297.1| ATP-dependent rRNA helicase RRP3 [Rhizoctonia solani AG-1 IA]
Length = 1028
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 235/454 (51%), Gaps = 76/454 (16%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
++ AL Q G+ PT+IQ+ ++P AL KD++G AETGSGKT AF +PIL
Sbjct: 107 LLEALKQVGYSKPTEIQAGIIPHALEG-KDVIGVAETGSGKTAAFALPIL---------- 155
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
++L +E L+A +LAPTRELA Q+
Sbjct: 156 ------------------QKLWDEP-----------RGLFACVLAPTRELAYQIAQQFEA 186
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L + YLV
Sbjct: 187 LGSAIGVRCATIVGGMDMMSQSIALGK-PHIIVATPGRLNDHLE--NTKGFSLRGLRYLV 243
Query: 959 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
+DE DR+++ P + IL +V E R TF+FSAT+ S K
Sbjct: 244 LDEADRLLDMDFGPVIDKIL-KVLPRE----RNTFLFSATM----------------STK 282
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
V+K ++R ++++P V++ K TL + +L KD +L + +
Sbjct: 283 VAK----LQRA----SLQNPVRVEVNGKYSTVSTLLQYYLLTPFANKDVHLVHLANELAA 334
Query: 1079 RTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
+++ F ++ +RL+ +L L +PLH ++Q RL L++F+ S+L+ATDVA
Sbjct: 335 NSIIIFTRTVHDAQRLSMVLRNLGFPAVPLHGQLSQSARLGALNKFKAGGRSLLIATDVA 394
Query: 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197
+ GLDIP ++ VI++ +P S+ YIHR GRTARA G ++ L+ ++ L ++ +
Sbjct: 395 S-GLDIPTVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELLQRIEGVIG 453
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
KK + +FPID++ + L+K+R+ A+ + E K
Sbjct: 454 KK--MMEFPIDKAEVMLLKERVGEAQRLAVQELK 485
Score = 160 bits (406), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 141/494 (28%), Positives = 214/494 (43%), Gaps = 156/494 (31%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
++ AL Q G+ PT+IQ+ ++P AL KD++G AETGSGKT AF +PIL
Sbjct: 107 LLEALKQVGYSKPTEIQAGIIPHALEG-KDVIGVAETGSGKTAAFALPIL---------- 155
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
++L +E L+A +LAPTRELA Q+
Sbjct: 156 ------------------QKLWDEP-----------RGLFACVLAPTRELAYQIAQQFEA 186
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341
G V+ A +VGGM Q L K PHI+VATPGRL + ++ + L + YLV
Sbjct: 187 LGSAIGVRCATIVGGMDMMSQSIALGK-PHIIVATPGRLNDHLE--NTKGFSLRGLRYLV 243
Query: 342 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPR 401
+DE DR+++ P + IL + PR+ R
Sbjct: 244 LDEADRLLDMDFGPVIDKILKVL-------PRE--------------------------R 270
Query: 402 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT 461
TF+FSAT+ S KV+K ++R ++++P V++ K
Sbjct: 271 NTFLFSATM----------------STKVAK----LQR----ASLQNPVRVEVNGKYSTV 306
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521
TL + +L KD +L + L E + + I+ T +
Sbjct: 307 STLLQYYLLTPFANKDVHLVH---------LANE------LAANSIIIFTRTV------- 344
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
HD +RL+ +L L +PLH ++Q
Sbjct: 345 -------HD--------------------------AQRLSMVLRNLGFPAVPLHGQLSQS 371
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
RL L++F+ S+L+ATDVA+ GLDIP ++ VI++ +P S+ YIHR GRTARA
Sbjct: 372 ARLGALNKFKAGGRSLLIATDVAS-GLDIPTVDVVINFDIPTHSKDYIHRVGRTARAGRA 430
Query: 642 GLTVVLIESDEIPL 655
G ++ L+ ++ L
Sbjct: 431 GKSITLVTQYDVEL 444
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 1354 WD------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 1407
WD A +LAPTRELA Q+ G V+ A +VGGM Q L K PHI+
Sbjct: 159 WDEPRGLFACVLAPTRELAYQIAQQFEALGSAIGVRCATIVGGMDMMSQSIALGK-PHII 217
Query: 1408 VATPGAL 1414
VATPG L
Sbjct: 218 VATPGRL 224
Score = 43.1 bits (100), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ ++ L ++ + KK + +FPID++ + L+K+R+
Sbjct: 416 DYIHRVGRTARAGRAGKSITLVTQYDVELLQRIEGVIGKK--MMEFPIDKAEVMLLKERV 473
Query: 1299 DLAKSIEYLESK 1310
A+ + E K
Sbjct: 474 GEAQRLAVQELK 485
>gi|420397037|ref|ZP_14896255.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1313]
gi|393012699|gb|EJB13877.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1313]
Length = 492
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFARTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 100 bits (248), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFARTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420458128|ref|ZP_14956938.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-26]
gi|393075649|gb|EJB76403.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-26]
Length = 492
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 100 bits (248), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420413206|ref|ZP_14912330.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4099]
gi|393029193|gb|EJB30274.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4099]
Length = 492
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420449759|ref|ZP_14948625.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-45]
gi|393069076|gb|EJB69874.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-45]
Length = 492
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTENYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTENYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420406445|ref|ZP_14905615.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6311]
gi|393023282|gb|EJB24396.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6311]
Length = 492
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|385217014|ref|YP_005778490.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
gi|317177063|dbj|BAJ54852.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
Length = 492
Score = 204 bits (519), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
Length = 436
Score = 204 bits (519), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 133/426 (31%), Positives = 215/426 (50%), Gaps = 72/426 (16%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M ++ + ++ A+ + G+ TPT IQ +P +L +D++G A+TG+GKT AFG+P
Sbjct: 1 MTDFQSLGLSNGLVTAVSENGYDTPTPIQQKAIP-LILEGRDLMGLAQTGTGKTAAFGLP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
++ + L+ E K TR ALILAPTR
Sbjct: 60 LI----------------------------DRLQAEKKKAVP--KGTR----ALILAPTR 85
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
EL Q+ +++ K+TP++V+ VVGG+S Q++ L+K ILVATPGRL + +
Sbjct: 86 ELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIKRLSKGTDILVATPGRLLDLVDR--- 142
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
+L +YLV+DE D+M++ G L+ I V + RQT +FSAT+
Sbjct: 143 EAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLV-----ADKRQTLLFSATMP------ 191
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
K++ +L +++P+ V++ +T+S +
Sbjct: 192 --------------------KQINELAQSYLRNPERVEVAPAGKTADKVTQSVHFMDKNS 231
Query: 1065 KDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
K +L + P G +LVFC + +RL + L+ S +H + +Q QR + +
Sbjct: 232 KGDFLVDQLRDKPDGLSLVFCRTKHGAERLMRKLSHSGISAGSIHGNKSQNQRDRAIKEL 291
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
R+ ++L+ATDVAARG+DIPG+ HV ++ +P +E Y+HR GRTARA EG + L
Sbjct: 292 REGTINVLVATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGEAIALCAP 351
Query: 1184 DEIPLY 1189
+EI L+
Sbjct: 352 EEIGLF 357
Score = 116 bits (291), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 123/240 (51%), Gaps = 43/240 (17%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M ++ + ++ A+ + G+ TPT IQ +P +L +D++G A+TG+GKT AFG+P
Sbjct: 1 MTDFQSLGLSNGLVTAVSENGYDTPTPIQQKAIP-LILEGRDLMGLAQTGTGKTAAFGLP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
++ + L+ E K TR ALILAPTR
Sbjct: 60 LI----------------------------DRLQAEKKKAVP--KGTR----ALILAPTR 85
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
EL Q+ +++ K+TP++V+ VVGG+S Q++ L+K ILVATPGRL + +
Sbjct: 86 ELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIKRLSKGTDILVATPGRLLDLVDR--- 142
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+L +YLV+DE D+M++ G L+ I V + RQT++ S P+ N L
Sbjct: 143 EAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLV-----ADKRQTLLFSATMPKQINEL 197
Score = 102 bits (254), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 3/168 (1%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRT 547
T+ ++I +L +++P+ V++ +T+S + K +L + P G +
Sbjct: 189 TMPKQINELAQSYLRNPERVEVAPAGKTADKVTQSVHFMDKNSKGDFLVDQLRDKPDGLS 248
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVFC + +RL + L+ S +H + +Q QR + + R+ ++L+ATDVAARG
Sbjct: 249 LVFCRTKHGAERLMRKLSHSGISAGSIHGNKSQNQRDRAIKELREGTINVLVATDVAARG 308
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+DIPG+ HV ++ +P +E Y+HR GRTARA EG + L +EI L
Sbjct: 309 IDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGEAIALCAPEEIGL 356
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALILAPTREL Q+ +++ K+TP++V+ VVGG+S Q++ L+K ILVATPG L
Sbjct: 78 ALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIKRLSKGTDILVATPGRL 136
>gi|420403406|ref|ZP_14902592.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6261]
gi|393020572|gb|EJB21711.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6261]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|383750102|ref|YP_005425205.1| ATP-dependent RNA helicase [Helicobacter pylori ELS37]
gi|380874848|gb|AFF20629.1| ATP-dependent RNA helicase [Helicobacter pylori ELS37]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERSEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|421721165|ref|ZP_16160442.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R055a]
gi|407225949|gb|EKE95719.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R055a]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRHASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRH 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420481826|ref|ZP_14980463.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp P-2]
gi|393099060|gb|EJB99641.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp P-2]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 207/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF ++ L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 100 bits (248), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF ++ L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420411610|ref|ZP_14910742.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4228]
gi|393030399|gb|EJB31478.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4228]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420493609|ref|ZP_14992180.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-16]
gi|393112865|gb|EJC13385.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-16]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 207/434 (47%), Gaps = 72/434 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---F 160
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP---------- 205
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
IKRL D + KI I T ++ +H+ ++ +
Sbjct: 206 -------------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL 252
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
Q P +++VF + L Q L LH M+QR R ++ F+ + +L+
Sbjct: 253 DTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLV 312
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M
Sbjct: 313 ATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRM 372
Query: 1193 FNSLEKKVDLPDFP 1206
++ +++L + P
Sbjct: 373 QKEIDSEIELFEIP 386
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 50/238 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KF 160
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 100 bits (248), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420464946|ref|ZP_14963713.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-6]
gi|393082433|gb|EJB83149.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-6]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 207/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF ++ L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 100 bits (248), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF ++ L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420506131|ref|ZP_15004646.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-74]
gi|393115636|gb|EJC16146.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-74]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420405153|ref|ZP_14904333.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6271]
gi|393025023|gb|EJB26133.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6271]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420466568|ref|ZP_14965325.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Hp H-9]
gi|393084966|gb|EJB85654.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Hp H-9]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420399731|ref|ZP_14898935.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY3281]
gi|393019272|gb|EJB20415.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY3281]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 207/434 (47%), Gaps = 72/434 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---F 160
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP---------- 205
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
IKRL D + KI I T ++ +H+ ++ +
Sbjct: 206 -------------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL 252
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
Q P +++VF + L Q L LH M+QR R ++ F+ + +L+
Sbjct: 253 DTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLV 312
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M
Sbjct: 313 ATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRM 372
Query: 1193 FNSLEKKVDLPDFP 1206
++ +++L + P
Sbjct: 373 QKEIDSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 50/238 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KF 160
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420394987|ref|ZP_14894218.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1124]
gi|393015751|gb|EJB16916.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1124]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|115454521|ref|NP_001050861.1| Os03g0669000 [Oryza sativa Japonica Group]
gi|75327677|sp|Q7Y183.1|RH10_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 10
gi|31126733|gb|AAP44655.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|53370642|gb|AAU89137.1| DEAD/DEAH box helicase domain containing protein [Oryza sativa
Japonica Group]
gi|108710302|gb|ABF98097.1| ATP-dependent RNA helicase DDX47, putative, expressed [Oryza sativa
Japonica Group]
gi|113549332|dbj|BAF12775.1| Os03g0669000 [Oryza sativa Japonica Group]
gi|125545183|gb|EAY91322.1| hypothetical protein OsI_12939 [Oryza sativa Indica Group]
gi|215695397|dbj|BAG90588.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 472
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 229/457 (50%), Gaps = 83/457 (18%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+PE ++ A G+K PT+IQ+ +P AL R D++G +TGSGKT AF +PI+ ++ K
Sbjct: 49 VPE-LVAACDAMGWKEPTRIQAEAIPHALEGR-DLIGLGQTGSGKTGAFALPIIQALL-K 105
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+ P L+A +L+PTRELA Q+
Sbjct: 106 QDKP------------------------------------QALFACVLSPTRELAFQIGQ 129
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---- 950
G + +VGG+ +Q L K PHI+V TPGRL + HLT+
Sbjct: 130 QFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRLLD-------HLTDTKGF 182
Query: 951 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L K+ YLV+DE D+++ L +IL+ + + R+TF+FSAT+T+
Sbjct: 183 SLNKLKYLVLDEADKLLNVEFQKALDDILNVI-----PKERRTFLFSATMTN-------- 229
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
KVSK LQ +++P V++ K TL + D KD +L
Sbjct: 230 --------KVSK-------LQRAC-LRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFL 273
Query: 1070 YYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ + + PG ++F + S + L L L+ + + M+Q +RL L+RF+ ++
Sbjct: 274 VHVLNELPGSMIMIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDC 333
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+IL+ TDVA+RGLDI G++ VI+Y +P S+ Y+HR GRTARA N G + L+ E +
Sbjct: 334 NILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYE-AM 392
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
+ KM L ++PD +D + + ++++RI +K I
Sbjct: 393 WFKMIEKL-LGYEIPDRKVDNAEIMILRERISDSKRI 428
Score = 161 bits (407), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 137/500 (27%), Positives = 210/500 (42%), Gaps = 163/500 (32%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+PE ++ A G+K PT+IQ+ +P AL R D++G +TGSGKT AF +PI+ ++ K
Sbjct: 49 VPE-LVAACDAMGWKEPTRIQAEAIPHALEGR-DLIGLGQTGSGKTGAFALPIIQALL-K 105
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+ P L+A +L+PTRELA Q+
Sbjct: 106 QDKP------------------------------------QALFACVLSPTRELAFQIGQ 129
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---- 333
G + +VGG+ +Q L K PHI+V TPGRL + HLT+
Sbjct: 130 QFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRLLD-------HLTDTKGF 182
Query: 334 -LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L K+ YLV+DE D+++ L +IL+ + P++
Sbjct: 183 SLNKLKYLVLDEADKLLNVEFQKALDDILNVI-------PKE------------------ 217
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
R+TF+FSAT+T+ KVSK LQ +++P V
Sbjct: 218 --------RRTFLFSATMTN----------------KVSK-------LQRAC-LRNPVKV 245
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
++ K TL + D KD +L + + + PG
Sbjct: 246 EVASKYSTVDTLRQEFYFVPADYKDCFLVHVLNELPG----------------------- 282
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
S + F+ + S + L L L+ +
Sbjct: 283 ---------------------SMIMIFV-----------RTCESTRLLALTLRNLRFKAI 310
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
+ M+Q +RL L+RF+ ++ +IL+ TDVA+RGLDI G++ VI+Y +P S+ Y+HR
Sbjct: 311 SISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRV 370
Query: 633 GRTARANNEGLTVVLIESDE 652
GRTARA N G V L+ E
Sbjct: 371 GRTARAGNTGYAVSLVNQYE 390
Score = 48.1 bits (113), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A +L+PTRELA Q+ G + +VGG+ +Q L K PHI+V TPG L
Sbjct: 114 ACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRL 172
Score = 42.0 bits (97), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA N G + L+ E ++ KM L ++PD +D + + ++++RI
Sbjct: 365 DYVHRVGRTARAGNTGYAVSLVNQYE-AMWFKMIEKL-LGYEIPDRKVDNAEIMILRERI 422
Query: 1299 DLAKSI 1304
+K I
Sbjct: 423 SDSKRI 428
>gi|421711256|ref|ZP_16150599.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R030b]
gi|407212405|gb|EKE82267.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R030b]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420429945|ref|ZP_14928975.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-20]
gi|393048564|gb|EJB49531.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-20]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420401386|ref|ZP_14900582.1| ATP-dependent RNA helicase [Helicobacter pylori CPY6081]
gi|393020008|gb|EJB21148.1| ATP-dependent RNA helicase [Helicobacter pylori CPY6081]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|421716313|ref|ZP_16155624.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R037c]
gi|407220576|gb|EKE90382.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R037c]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERSEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420501086|ref|ZP_14999630.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-30]
gi|393149892|gb|EJC50200.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-30]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420498815|ref|ZP_14997372.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-26]
gi|393152794|gb|EJC53090.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-26]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420441616|ref|ZP_14940561.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-36]
gi|393059745|gb|EJB60620.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-36]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 207/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF ++ L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 100 bits (248), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF ++ L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420490274|ref|ZP_14988860.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-13]
gi|393109617|gb|EJC10148.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-13]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKAVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKAVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKAVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420485287|ref|ZP_14983905.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp P-4]
gi|420515778|ref|ZP_15014241.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4c]
gi|420517482|ref|ZP_15015936.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4d]
gi|393103422|gb|EJC03985.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp P-4]
gi|393122981|gb|EJC23450.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4d]
gi|393124077|gb|EJC24545.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4c]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMCLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMCLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420454799|ref|ZP_14953629.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-14]
gi|393073149|gb|EJB73923.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-14]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|217033461|ref|ZP_03438891.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
gi|216944166|gb|EEC23594.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 207/434 (47%), Gaps = 72/434 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---F 160
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP---------- 205
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
IKRL D + KI I T ++ +H+ ++ +
Sbjct: 206 -------------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL 252
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
Q P +++VF + L Q L LH M+QR R ++ F+ + +L+
Sbjct: 253 DTQAPKKSIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLV 312
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M
Sbjct: 313 ATDVASRGLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRM 372
Query: 1193 FNSLEKKVDLPDFP 1206
++ +++L + P
Sbjct: 373 QKEIDSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 50/238 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KF 160
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420473658|ref|ZP_14972336.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-19]
gi|393090786|gb|EJB91419.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-19]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHR---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---RFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|15644875|ref|NP_207045.1| DEAD/DEAH box helicase [Helicobacter pylori 26695]
gi|410023485|ref|YP_006892738.1| DEAD/DEAH box helicase [Helicobacter pylori Rif1]
gi|410501253|ref|YP_006935780.1| DEAD/DEAH box helicase [Helicobacter pylori Rif2]
gi|410681772|ref|YP_006934174.1| DEAD/DEAH box helicase [Helicobacter pylori 26695]
gi|419416982|ref|ZP_13957482.1| DEAD/DEAH box helicase [Helicobacter pylori P79]
gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter
pylori 26695]
gi|384374141|gb|EIE29566.1| DEAD/DEAH box helicase [Helicobacter pylori P79]
gi|409893413|gb|AFV41471.1| DEAD/DEAH box helicase [Helicobacter pylori 26695]
gi|409895142|gb|AFV43064.1| DEAD/DEAH box helicase [Helicobacter pylori Rif1]
gi|409896804|gb|AFV44658.1| DEAD/DEAH box helicase [Helicobacter pylori Rif2]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|384896986|ref|YP_005772414.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
gi|317012091|gb|ADU82699.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|421719303|ref|ZP_16158589.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R046Wa]
gi|407222474|gb|EKE92273.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R046Wa]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420443256|ref|ZP_14942184.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-41]
gi|393060763|gb|EJB61632.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-41]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|385224943|ref|YP_005784868.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83]
gi|332673089|gb|AEE69906.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|385223306|ref|YP_005783232.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
gi|385231153|ref|YP_005791072.1| cold-shock DEAD-box protein A [Helicobacter pylori 2018]
gi|420439937|ref|ZP_14938897.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-30]
gi|420463244|ref|ZP_14962022.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-4]
gi|420475132|ref|ZP_14973803.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-21]
gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018]
gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
gi|393057963|gb|EJB58859.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-30]
gi|393080772|gb|EJB81497.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-4]
gi|393093239|gb|EJB93856.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-21]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|109947876|ref|YP_665104.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
gi|109715097|emb|CAK00105.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
Length = 494
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 207/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 31 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 85
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 86 N------------------------------------NHTIEALVITPTRELAMQISDEI 109
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 110 FKLGKHTKTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNDRIHK---FVPKV 166
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 167 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 207
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IK+L D + KI I T ++ +H+ ++ ++ Q
Sbjct: 208 ---------IKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMHLLDTQA 258
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 259 PEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 318
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 319 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 378
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 379 DSEIELFEIP 388
Score = 118 bits (295), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 31 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 85
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 86 N------------------------------------NHTIEALVITPTRELAMQISDEI 109
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 110 FKLGKHTKTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNDRIH---KFVPKV 166
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 167 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKKLADKI 215
Score = 100 bits (250), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ ++ Q P +++VF + L Q L LH M+QR R
Sbjct: 240 VINEHERSEAIMHLLDTQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRR 299
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 300 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 359
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 360 ITLV----TPLEYKELLRMQKEIDSEIE 383
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 88 HTIEALVITPTRELAMQISDEIFKLGKHTKTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 147
Query: 1412 GAL 1414
G L
Sbjct: 148 GRL 150
>gi|420453086|ref|ZP_14951925.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-8]
gi|393070694|gb|EJB71483.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-8]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420530777|ref|ZP_15029152.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-28b]
gi|393138803|gb|EJC39184.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-28b]
Length = 492
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420483531|ref|ZP_14982161.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp P-3]
gi|420513885|ref|ZP_15012358.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-3b]
gi|393102756|gb|EJC03320.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp P-3]
gi|393158348|gb|EJC58608.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-3b]
Length = 491
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|325091017|gb|EGC44327.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H88]
Length = 828
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 198/410 (48%), Gaps = 68/410 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F++ I+R L GF TPT IQ +P ALL KD+VG A TGSGKT AF IPIL ++
Sbjct: 309 FSLSRPILRGLTSVGFTTPTPIQRKTIPVALLG-KDVVGGAVTGSGKTGAFIIPILERLL 367
Query: 833 NKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+ PT +IL PTRELA+Q
Sbjct: 368 YRPRKVPTSR-------------------------------------VVILMPTRELAVQ 390
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
N +T + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 391 CYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDT 450
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+I LV+DE DRM+E G EL IL T + RQT +FSAT+T+++ + +
Sbjct: 451 LEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTNNVDKLIRVGL 503
Query: 1012 GQSKSKKVSKGDPSIKRL-QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 1070
+ V ++ L Q+ + ++ + K L +LCK+ KD
Sbjct: 504 NRPVRLMVDAKKQTVGTLIQEFVRLRPGRE---------EKRLGYLIVLCKNIYKD---- 550
Query: 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
R +VF S R+ + +L LH SM+Q QR+K+++ FRD S
Sbjct: 551 --------RVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSF 602
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
LLATDVA+RGLDI G+E VI+Y P++ EIY+HR GRTARA G L
Sbjct: 603 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTL 652
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 148/333 (44%), Gaps = 64/333 (19%)
Query: 82 NPSQVEVSELSANTNDPDDQ-----VNKTEEIQSDEPS---SKKLKQKKKKKQTYTSANK 133
+ S+ E S+N D D+ V ++I SD+ S S+ + +K+K + K
Sbjct: 234 DTSEGESEADSSNDTDSDNDSVASPVPHPDDITSDDGSGDESEDAAEIEKQKSFFAPEEK 293
Query: 134 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
S N D+ + F++ I+R L GF TPT IQ +P ALL KD+V
Sbjct: 294 ------ASANGDL-KSAKSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLG-KDVV 345
Query: 194 GAAETGSGKTLAFGIPILTGIVNKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEF 252
G A TGSGKT AF IPIL ++ + PT
Sbjct: 346 GGAVTGSGKTGAFIIPILERLLYRPRKVPTSR---------------------------- 377
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
+IL PTRELA+Q N +T + +VGG S +Q IL K P +
Sbjct: 378 ---------VVILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 428
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
++ATPGR + ++ + +I LV+DE DRM+E G EL IL T +
Sbjct: 429 IIATPGRFIDHMRNSASFTVDTLEI--LVLDEADRMLEDGFADELNEIL-----TTIPKS 481
Query: 373 RQTMIESGHFPELKNILDRVTMTETSQPRQTFV 405
RQTM+ S + N +D++ ++P + V
Sbjct: 482 RQTMLFSAT---MTNNVDKLIRVGLNRPVRLMV 511
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 12/123 (9%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
+LCK+ KD R +VF S R+ + +L LH SM+Q QR+
Sbjct: 542 VLCKNIYKD------------RVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRI 589
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
K+++ FRD S LLATDVA+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 590 KSVESFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRA 649
Query: 645 VVL 647
L
Sbjct: 650 CTL 652
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+IL PTRELA+Q N +T + +VGG S +Q IL K P +++ATPG
Sbjct: 379 VILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPG 434
>gi|420414758|ref|ZP_14913875.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4053]
gi|393034502|gb|EJB35559.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4053]
Length = 492
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|425788880|ref|YP_007016800.1| ATP-dependent RNA helicase [Helicobacter pylori Aklavik117]
gi|425627195|gb|AFX90663.1| ATP-dependent RNA helicase [Helicobacter pylori Aklavik117]
Length = 492
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|421713416|ref|ZP_16152747.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R32b]
gi|407216782|gb|EKE86619.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R32b]
Length = 492
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420456516|ref|ZP_14955337.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-16]
gi|393075147|gb|EJB75902.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-16]
Length = 491
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|385228012|ref|YP_005787945.1| ATP-dependent RNA helicase [Helicobacter pylori Puno120]
gi|344334450|gb|AEN14894.1| ATP-dependent RNA helicase [Helicobacter pylori Puno120]
Length = 492
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 TSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|108562675|ref|YP_626991.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
gi|217031464|ref|ZP_03436969.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
gi|298736807|ref|YP_003729337.1| putative helicase [Helicobacter pylori B8]
gi|107836448|gb|ABF84317.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
gi|216946664|gb|EEC25260.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
gi|298356001|emb|CBI66873.1| putative helicase [Helicobacter pylori B8]
Length = 492
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420524110|ref|ZP_15022520.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-13b]
gi|393133269|gb|EJC33686.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-13b]
Length = 491
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420471737|ref|ZP_14970433.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-18]
gi|420476932|ref|ZP_14975594.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-23]
gi|420478711|ref|ZP_14977363.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-34]
gi|393091092|gb|EJB91724.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-18]
gi|393094537|gb|EJB95145.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-23]
gi|393096266|gb|EJB96864.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-34]
Length = 491
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|385215525|ref|YP_005775481.1| ATP-dependent RNA helicase [Helicobacter pylori F32]
gi|317180053|dbj|BAJ57839.1| ATP-dependent RNA helicase [Helicobacter pylori F32]
Length = 492
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420447374|ref|ZP_14946266.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-43]
gi|393062789|gb|EJB63637.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-43]
Length = 492
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|308184052|ref|YP_003928185.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
gi|308059972|gb|ADO01868.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
Length = 492
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420502234|ref|ZP_15000775.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-41]
gi|393153514|gb|EJC53807.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-41]
Length = 492
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDIAQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMVFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMVFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420486880|ref|ZP_14985488.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-8]
gi|420520767|ref|ZP_15019198.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-8b]
gi|393104433|gb|EJC04990.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-8]
gi|393127354|gb|EJC27799.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-8b]
Length = 492
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420433429|ref|ZP_14932437.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-24]
gi|420507185|ref|ZP_15005698.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-24b]
gi|420508875|ref|ZP_15007377.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-24c]
gi|420532623|ref|ZP_15030986.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M1]
gi|420534186|ref|ZP_15032537.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M2]
gi|420535991|ref|ZP_15034333.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M3]
gi|420537697|ref|ZP_15036027.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M4]
gi|420539422|ref|ZP_15037741.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M5]
gi|420541180|ref|ZP_15039488.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M6]
gi|420542703|ref|ZP_15040998.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M9]
gi|393050957|gb|EJB51910.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-24]
gi|393119266|gb|EJC19757.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-24b]
gi|393120301|gb|EJC20790.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-24c]
gi|393140254|gb|EJC40627.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M1]
gi|393142409|gb|EJC42763.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M2]
gi|393143639|gb|EJC43983.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M3]
gi|393145252|gb|EJC45583.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M4]
gi|393147107|gb|EJC47432.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M5]
gi|393147800|gb|EJC48124.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M6]
gi|393159766|gb|EJC60015.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M9]
Length = 491
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420512248|ref|ZP_15010731.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2b]
gi|393157311|gb|EJC57572.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2b]
Length = 492
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|387781935|ref|YP_005792648.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
gi|261837694|gb|ACX97460.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
Length = 492
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter pylori
B38]
gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter pylori
B38]
Length = 492
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|242222657|ref|XP_002477039.1| predicted protein [Postia placenta Mad-698-R]
gi|220723636|gb|EED77767.1| predicted protein [Postia placenta Mad-698-R]
Length = 389
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 217/437 (49%), Gaps = 82/437 (18%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+ ++ AL Q FK PT+IQ +P AL R DI+G A TGSGKT AF +PIL
Sbjct: 28 DPLLEALEQLNFKIPTEIQVQALPHALQGR-DIIGVASTGSGKTAAFALPIL-------- 78
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
++L EE L+A I+APTRELA Q+ I
Sbjct: 79 --------------------QKLWEEPKG-----------LFACIMAPTRELAYQISQQI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYK 953
G V+ +VGGM Q L K PHI+VATPGRL + H T+ L
Sbjct: 108 EALGSAMGVRCVTLVGGMDKMAQAVALAKRPHIVVATPGRLND-----HLEDTKGFSLRG 162
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 1013
+ +LV+DE DR+++ P + IL + + R T++FSAT+T
Sbjct: 163 LKFLVLDEADRLLDMDFGPIIDKILKAI-----PRERTTYLFSATMT------------- 204
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF- 1072
+K K+ + ++ +P V+++EK TL + + +KD +L Y
Sbjct: 205 TKVAKLQRA-----------SLSNPVRVEVSEKYSTVSTLLQYYLFIPLVQKDVHLIYLA 253
Query: 1073 -ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
IL ++F ++ +RL+ +L L +PLH ++Q RL L +F+ +L
Sbjct: 254 NILAQ-NSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKVL 312
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ L +
Sbjct: 313 VATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELIQR 372
Query: 1192 MFNSLEKKVDLPDFPID 1208
+ ++ KK++L +P D
Sbjct: 373 IETTIGKKMEL--WPTD 387
Score = 174 bits (440), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 143/499 (28%), Positives = 212/499 (42%), Gaps = 160/499 (32%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+ ++ AL Q FK PT+IQ +P AL R DI+G A TGSGKT AF +PIL
Sbjct: 28 DPLLEALEQLNFKIPTEIQVQALPHALQGR-DIIGVASTGSGKTAAFALPIL-------- 78
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
++L EE L+A I+APTRELA Q+ I
Sbjct: 79 --------------------QKLWEEPKG-----------LFACIMAPTRELAYQISQQI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE---LYK 336
G V+ +VGGM Q L K PHI+VATPGRL + H T+ L
Sbjct: 108 EALGSAMGVRCVTLVGGMDKMAQAVALAKRPHIVVATPGRLND-----HLEDTKGFSLRG 162
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396
+ +LV+DE DR+++ P + IL + PR+
Sbjct: 163 LKFLVLDEADRLLDMDFGPIIDKILKAI-------PRE---------------------- 193
Query: 397 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 456
R T++FSAT+T +K K+ + ++ +P V+++E
Sbjct: 194 ----RTTYLFSATMT-------------TKVAKLQRA-----------SLSNPVRVEVSE 225
Query: 457 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516
K TL + + +KD +L Y L NI
Sbjct: 226 KYSTVSTLLQYYLFIPLVQKDVHLIY----------------LANI-------------- 255
Query: 517 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA 576
L ++ I+ +F ++ +RL+ +L L +PLH
Sbjct: 256 ---LAQNSII----------------------IFTRTVHDAQRLSIILRTLGFPAVPLHG 290
Query: 577 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 636
++Q RL L +F+ +L+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTA
Sbjct: 291 QLSQSARLGALGKFKSGGRKVLVATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTA 350
Query: 637 RANNEGLTVVLIESDEIPL 655
RA G ++ L+ ++ L
Sbjct: 351 RAGRSGKSITLVTQYDVEL 369
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A I+APTRELA Q+ I G V+ +VGGM Q L K PHI+VATPG L
Sbjct: 90 ACIMAPTRELAYQISQQIEALGSAMGVRCVTLVGGMDKMAQAVALAKRPHIVVATPGRL 148
>gi|420488482|ref|ZP_14987082.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-11]
gi|420522411|ref|ZP_15020835.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-11b]
gi|393109053|gb|EJC09585.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-11]
gi|393129368|gb|EJC29802.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-11b]
Length = 491
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420409625|ref|ZP_14908771.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4200]
gi|393029739|gb|EJB30819.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4200]
Length = 484
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 207/434 (47%), Gaps = 72/434 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---F 160
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP---------- 205
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
IKRL D + KI I T ++ +H+ ++ +
Sbjct: 206 -------------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL 252
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
Q P +++VF + L Q L LH M+QR R ++ F+ + +L+
Sbjct: 253 DTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLV 312
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M
Sbjct: 313 ATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRM 372
Query: 1193 FNSLEKKVDLPDFP 1206
++ +++L + P
Sbjct: 373 QKEIDSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 50/238 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KF 160
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420438295|ref|ZP_14937269.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-29]
gi|420519043|ref|ZP_15017487.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-5b]
gi|393055895|gb|EJB56807.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-29]
gi|393128135|gb|EJC28579.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-5b]
Length = 491
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420497178|ref|ZP_14995739.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25]
gi|393114875|gb|EJC15390.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25]
Length = 501
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEVQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEVQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|385226514|ref|YP_005786438.1| ATP-dependent RNA helicase [Helicobacter pylori SNT49]
gi|344331427|gb|AEN16457.1| ATP-dependent RNA helicase [Helicobacter pylori SNT49]
Length = 492
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIIAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 TSIIAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|425433062|ref|ZP_18813601.1| putative DEAD-box ATP-dependent RNA helicase CshA [Helicobacter
pylori GAM100Ai]
gi|410714366|gb|EKQ71841.1| putative DEAD-box ATP-dependent RNA helicase CshA [Helicobacter
pylori GAM100Ai]
Length = 491
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFMRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFMRTKKEADELHQFLVSKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420461541|ref|ZP_14960331.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-3]
gi|393081521|gb|EJB82241.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-3]
Length = 491
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420423148|ref|ZP_14922221.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-4]
gi|393042428|gb|EJB43437.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-4]
Length = 491
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|417938107|ref|ZP_12581405.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
gi|343391197|gb|EGV03772.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
Length = 525
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 214/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+L+ I L++DE D M+ G ++++I+ RV + RQT +FSAT+ +
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEDIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 126/262 (48%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L+ I L++DE D M+ G ++++I+ RV + RQT++ S P + + R+
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEDIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ + P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|420468314|ref|ZP_14967056.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-10]
gi|393087995|gb|EJB88647.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-10]
Length = 492
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 207/434 (47%), Gaps = 72/434 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---F 160
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP---------- 205
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
IKRL D + KI I T ++ +H+ ++ +
Sbjct: 206 -------------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLL 252
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
Q P +++VF + L Q L LH M+QR R ++ F+ + +L+
Sbjct: 253 DTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLV 312
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M
Sbjct: 313 ATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRM 372
Query: 1193 FNSLEKKVDLPDFP 1206
++ +++L + P
Sbjct: 373 QKEIDSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 50/238 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KF 160
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|70996226|ref|XP_752868.1| ATP-dependent RNA helicase (Drs1) [Aspergillus fumigatus Af293]
gi|74672247|sp|Q4WRV2.1|DRS1_ASPFU RecName: Full=ATP-dependent RNA helicase drs1
gi|66850503|gb|EAL90830.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
Af293]
gi|159131623|gb|EDP56736.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
A1163]
Length = 830
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 138/412 (33%), Positives = 200/412 (48%), Gaps = 72/412 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
FN+ I+R L F TPT IQ +P ALL KDIVG+A TGSGKT AF +PIL
Sbjct: 315 FNLSRPILRGLASVNFTTPTPIQQKTIPVALLG-KDIVGSAVTGSGKTAAFVVPIL---- 369
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
E +L F + IL PTRELA+Q
Sbjct: 370 --------------------ERLL------------FRPRKVPTSRVAILMPTRELAVQC 397
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
N +T + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 398 YNVATKLATHTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTL 457
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+I LV+DE DRM+E G EL IL T + RQT +FSAT+T S+ + + G
Sbjct: 458 EI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDSVDKLIRV--G 508
Query: 1013 QSKSKKV---SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
++ ++ SK + S+ Q+ + ++ + D++ YL
Sbjct: 509 LNRPVRLMVDSKKNTSMNLTQEFVRLRP----------------------GREDKRLGYL 546
Query: 1070 YYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + + GR +VF R+ + +L LH SM+Q QR+K+++ FR+
Sbjct: 547 LYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGKV 606
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G +
Sbjct: 607 AFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI 658
Score = 110 bits (276), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 110/239 (46%), Gaps = 44/239 (18%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
FN+ I+R L F TPT IQ +P ALL KDIVG+A TGSGKT AF +PIL
Sbjct: 315 FNLSRPILRGLASVNFTTPTPIQQKTIPVALLG-KDIVGSAVTGSGKTAAFVVPIL---- 369
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
E +L F + IL PTRELA+Q
Sbjct: 370 --------------------ERLL------------FRPRKVPTSRVAILMPTRELAVQC 397
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
N +T + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 398 YNVATKLATHTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTL 457
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+I LV+DE DRM+E G EL IL T + RQTM+ S + + L RV +
Sbjct: 458 EI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDSVDKLIRVGL 509
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 528 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ D++ YL Y + + GR +VF R+ + +L LH SM+Q QR+K+
Sbjct: 538 REDKRLGYLLYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKS 597
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
++ FR+ + LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 598 VENFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACT 657
Query: 647 L 647
+
Sbjct: 658 I 658
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F R + S A IL PTRELA+Q N +T + +VGG S +Q IL K
Sbjct: 372 LLFRPRKVPTSRVA-ILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKK 430
Query: 1403 CPHILVATPG 1412
P +++ATPG
Sbjct: 431 RPDVIIATPG 440
>gi|417092627|ref|ZP_11957243.1| superfamily II DNA/RNA helicase [Streptococcus suis R61]
gi|353532306|gb|EHC01978.1| superfamily II DNA/RNA helicase [Streptococcus suis R61]
Length = 523
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 210/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ E I+ A+ + GF+TP+ IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLSEDILLAVEKAGFETPSPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I D N+ ++ ALI+APTRELA
Sbjct: 62 KI----------DINNQAVQ-----------------------------ALIIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLD 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ L++DE D M+ G +++ I++RV + RQT +FSAT+ +K + +
Sbjct: 143 ---GVETLILDEADEMLNMGFLDDIEAIIERVPAS-----RQTLLFSATMPEPIKR-IGV 193
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
K +K P+ V + K + + I K EK D+
Sbjct: 194 K-----------------------FMKEPEHVKIAAKELTNVNVDQYYIRVKEHEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + L KK
Sbjct: 350 YLAIIEDLTKK 360
Score = 126 bits (316), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 117/232 (50%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ E I+ A+ + GF+TP+ IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLSEDILLAVEKAGFETPSPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I D N+ ++ ALI+APTRELA
Sbjct: 62 KI----------DINNQAVQ-----------------------------ALIIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLD 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ L++DE D M+ G +++ I++RV + RQT++ S PE
Sbjct: 143 ---GVETLILDEADEMLNMGFLDDIEAIIERVPAS-----RQTLLFSATMPE 186
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 71/125 (56%)
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
H++ D+ + P ++VF + V LT+ L + +H ++Q +RL+ +
Sbjct: 224 HEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIR 283
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
F++ +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ +
Sbjct: 284 DFKNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFV 343
Query: 649 ESDEI 653
+E+
Sbjct: 344 SPNEM 348
Score = 65.9 bits (159), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++ +E+ I + D L +M + D E +I+ SR+ L S
Sbjct: 131 ---LDLIKRKALKLDGVETLI-LDEADEML-----NMGFLDDIEAIIERVPASRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|421714416|ref|ZP_16153737.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R036d]
gi|407218101|gb|EKE87930.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R036d]
Length = 492
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 208/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + +E Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYLP-SEV----QILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (292), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + +E Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYLP-SEV----QILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|421709650|ref|ZP_16149009.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R018c]
gi|421722902|ref|ZP_16162159.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R056a]
gi|407211095|gb|EKE80964.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R018c]
gi|407225270|gb|EKE95041.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R056a]
Length = 492
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 208/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + +E Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYLP-SEV----QILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (292), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + +E Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYLP-SEV----QILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC 700641]
gi|417918982|ref|ZP_12562526.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC 700641]
gi|342835133|gb|EGU69390.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
Length = 524
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 214/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+L+ I L++DE D M+ G ++++I+ RV + RQT +FSAT+ +
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEDIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 126/262 (48%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L+ I L++DE D M+ G ++++I+ RV + RQT++ S P + + R+
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEDIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 96.7 bits (239), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ + P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|208434194|ref|YP_002265860.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
gi|208432123|gb|ACI26994.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
Length = 492
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELLEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|168046775|ref|XP_001775848.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672855|gb|EDQ59387.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 150/474 (31%), Positives = 236/474 (49%), Gaps = 80/474 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + ++RA + G K PT +Q +P +LA KD+ G A+TGSGKT AF +PIL +
Sbjct: 49 LGLTDWLVRACKELGMKRPTLVQQGCVPQ-ILAGKDVFGLAQTGSGKTAAFALPILQKLA 107
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
ENP ++AL+L PTRELA Q+
Sbjct: 108 ---ENP------------------------------------YGVFALVLTPTRELAFQI 128
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH----L 948
+ G ++ VVGGM Q + L + PHI++ATPGRL + HF +
Sbjct: 129 SDQFKALGSEVNLRSTVVVGGMDMTTQAKALMQRPHIVIATPGRLRD-----HFMNDPGI 183
Query: 949 TELY-KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
+++ K YLV+DE DR+++ G EL+++ + TM RQT +FSAT+T +LK
Sbjct: 184 PDVFAKAKYLVLDEADRLMDVGFESELRSVFE--TMPSN---RQTLLFSATMTSNLKALH 238
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
+L ++ + +G +++ LQ I +P V + I TL E KI
Sbjct: 239 DLSLDKAFFYQQYEGFKTVEALQQQY-ILTPANVKDVYLMHIMSTLEERKIRS------- 290
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
++F +S + L+ +++ L+ LH+ Q+QRL +L RF+
Sbjct: 291 ------------VIIFASSCRTCHLLSLMMSELEVDTTALHSMKTQQQRLASLSRFKSGQ 338
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
SIL+ATDVA+RGLDIP ++ VI+Y +PR + Y+HR GRTARA G + LI ++
Sbjct: 339 VSILIATDVASRGLDIPTVDLVINYDIPRFTRDYVHRVGRTARAGRGGSAVSLITQYDVQ 398
Query: 1188 LYIKMFNSLEKKVDLPDFPIDESVLSLIK----KRIDLAKSIEY-LESKIKKNR 1236
L + L KK++ + D+ + S+ K KR+ + K ++ E K+K +
Sbjct: 399 LVQDIEELLGKKLEEYELDEDKVLKSITKVYKAKRVAMLKIVDSGFEDKVKTRK 452
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 142/319 (44%), Gaps = 84/319 (26%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + ++RA + G K PT +Q +P +LA KD+ G A+TGSGKT AF +PIL +
Sbjct: 49 LGLTDWLVRACKELGMKRPTLVQQGCVPQ-ILAGKDVFGLAQTGSGKTAAFALPILQKLA 107
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
ENP ++AL+L PTRELA Q+
Sbjct: 108 ---ENP------------------------------------YGVFALVLTPTRELAFQI 128
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF----HL 331
+ G ++ VVGGM Q + L + PHI++ATPGRL + HF +
Sbjct: 129 SDQFKALGSEVNLRSTVVVGGMDMTTQAKALMQRPHIVIATPGRLRD-----HFMNDPGI 183
Query: 332 TELY-KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
+++ K YLV+DE DR+++ G EL+++ + TM
Sbjct: 184 PDVFAKAKYLVLDEADRLMDVGFESELRSVFE--TMPSN--------------------- 220
Query: 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450
RQT +FSAT+T +LK +L ++ + +G +++ LQ I +P
Sbjct: 221 ----------RQTLLFSATMTSNLKALHDLSLDKAFFYQQYEGFKTVEALQQQY-ILTPA 269
Query: 451 IVDLTEKIGITKTLTESKI 469
V + I TL E KI
Sbjct: 270 NVKDVYLMHIMSTLEERKI 288
Score = 101 bits (251), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 12/162 (7%)
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR----TLVFCNSISSVKRLTQLLTML 567
E + L + IL + KD YL + + R ++F +S + L+ +++ L
Sbjct: 252 EGFKTVEALQQQYILTPANVKDVYLMHIMSTLEERKIRSVIIFASSCRTCHLLSLMMSEL 311
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+ LH+ Q+QRL +L RF+ SIL+ATDVA+RGLDIP ++ VI+Y +PR +
Sbjct: 312 EVDTTALHSMKTQQQRLASLSRFKSGQVSILIATDVASRGLDIPTVDLVINYDIPRFTRD 371
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEE 669
Y+HR GRTARA G V LI T++++Q ++ EE
Sbjct: 372 YVHRVGRTARAGRGGSAVSLI--------TQYDVQLVQDIEE 405
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y AL+L PTRELA Q+ + G ++ VVGGM Q + L + PHI++ATP
Sbjct: 111 YGVFALVLTPTRELAFQISDQFKALGSEVNLRSTVVVGGMDMTTQAKALMQRPHIVIATP 170
Query: 1412 GALSLKRI------DLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKAN 1463
G L + D+ +YL L++A + MD+ + E ++ + +
Sbjct: 171 GRLRDHFMNDPGIPDVFAKAKYL-----------VLDEADRLMDVGFESELRSVFETMPS 219
Query: 1464 SRENALMSKALVSKRKELQSL 1484
+R+ L S + S K L L
Sbjct: 220 NRQTLLFSATMTSNLKALHDL 240
>gi|420418192|ref|ZP_14917284.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4076]
gi|393033018|gb|EJB34081.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4076]
Length = 492
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420480288|ref|ZP_14978932.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp P-1]
gi|420510736|ref|ZP_15009225.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1b]
gi|393098201|gb|EJB98793.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp P-1]
gi|393121244|gb|EJC21727.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1b]
Length = 492
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420503814|ref|ZP_15002344.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-62]
gi|393155203|gb|EJC55480.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-62]
Length = 489
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 27 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 81
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 82 N------------------------------------NHTIEALVITPTRELAMQISDEI 105
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 106 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 162
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 163 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 203
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 204 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 254
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 255 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 314
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 315 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 374
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 375 DSEIELFEIP 384
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 27 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 81
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 82 N------------------------------------NHTIEALVITPTRELAMQISDEI 105
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 106 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 162
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 163 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 211
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 236 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 295
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 296 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 355
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 356 ITLV----TPLEYKELLRMQKEIDSEIE 379
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 84 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 143
Query: 1412 GAL 1414
G L
Sbjct: 144 GRL 146
>gi|420431829|ref|ZP_14930848.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-16]
gi|393049422|gb|EJB50388.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-16]
Length = 491
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|386745758|ref|YP_006218975.1| ATP-dependent RNA helicase [Helicobacter pylori HUP-B14]
gi|384552007|gb|AFI06955.1| ATP-dependent RNA helicase [Helicobacter pylori HUP-B14]
Length = 492
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|358370127|dbj|GAA86739.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 832
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 134/408 (32%), Positives = 199/408 (48%), Gaps = 74/408 (18%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
FN+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL ++
Sbjct: 319 FNLSRPILRGLAGVNFSNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERLL 377
Query: 833 NKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+ PT IL PTRELA+Q
Sbjct: 378 FRPRKVPTSR-------------------------------------VAILMPTRELAVQ 400
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
N YT + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 401 CYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDT 460
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+I LV+DE DRM+E G EL IL T + RQT +FSAT+T ++ + +
Sbjct: 461 LEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDTVDKLIRV-- 511
Query: 1012 GQSKSKKV---SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
G ++ ++ +K + ++ +Q+ + ++ + D++ Y
Sbjct: 512 GLNRPVRLMVDAKKNTAVTLVQEFVRLRP----------------------GREDKRLGY 549
Query: 1069 LYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L Y + + GR +VF R+ + +L LH SM+Q QR+K+++ FR+
Sbjct: 550 LLYLCKELYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGK 609
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
+ LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 610 AAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSG 657
Score = 111 bits (277), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 109/240 (45%), Gaps = 46/240 (19%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
FN+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL ++
Sbjct: 319 FNLSRPILRGLAGVNFSNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERLL 377
Query: 216 NKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+ PT IL PTRELA+Q
Sbjct: 378 FRPRKVPTSR-------------------------------------VAILMPTRELAVQ 400
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
N YT + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 401 CYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDT 460
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+I LV+DE DRM+E G EL IL T + RQTM+ S + + L RV +
Sbjct: 461 LEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTDTVDKLIRVGL 513
Score = 107 bits (267), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 528 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ D++ YL Y + + GR +VF R+ + +L LH SM+Q QR+K+
Sbjct: 542 REDKRLGYLLYLCKELYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKS 601
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
++ FR+ + LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 602 VENFREGKAAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACT 661
Query: 647 L 647
+
Sbjct: 662 I 662
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F R + S A IL PTRELA+Q N YT + +VGG S +Q IL K
Sbjct: 376 LLFRPRKVPTSRVA-ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 434
Query: 1403 CPHILVATPG 1412
P +++ATPG
Sbjct: 435 RPDVIIATPG 444
>gi|420492318|ref|ZP_14990892.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-15]
gi|420526342|ref|ZP_15024743.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-15b]
gi|393106757|gb|EJC07300.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-15]
gi|393131647|gb|EJC32070.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-15b]
Length = 492
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 208/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + +E Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYLP-SEV----QILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (292), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + +E Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYLP-SEV----QILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|207091782|ref|ZP_03239569.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori
HPKX_438_AG0C1]
Length = 492
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 207/434 (47%), Gaps = 72/434 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---F 160
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP---------- 205
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
IKRL D + KI I T ++ +H+ ++ +
Sbjct: 206 -------------IKRLADKILENPIKIHIAPSDITNTDITQRFYVINEHERAEAIMRLL 252
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
Q P +++VF + L Q L LH M+QR R ++ F+ + +L+
Sbjct: 253 DTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLV 312
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M
Sbjct: 313 ATDVASRGLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRM 372
Query: 1193 FNSLEKKVDLPDFP 1206
++ +++L + P
Sbjct: 373 QKEIDSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 50/238 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +
Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----I 79
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N L+N + + AL++ PTRELA+Q+
Sbjct: 80 NNLKN------------------------------------NHTIEALVITPTRELAMQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ I GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KF 160
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 161 VPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|358464311|ref|ZP_09174276.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357067077|gb|EHI77207.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 524
Score = 203 bits (516), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 213/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+L+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 125/262 (47%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.4 bits (241), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
gi|337738217|ref|YP_004637664.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384459728|ref|YP_005672148.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis ortholog
[Clostridium acetobutylicum ATCC 824]
gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|336293434|gb|AEI34568.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 528
Score = 203 bits (516), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 211/406 (51%), Gaps = 72/406 (17%)
Query: 778 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 837
++++A+ GF+ P+KIQ+ +P ++ D++G A+TG+GKT+AFG PI++ I
Sbjct: 14 SVLKAIDDMGFEEPSKIQAEAIP-VVIDGYDMIGQAQTGTGKTVAFGAPIISKI------ 66
Query: 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 897
++++E+ + A+IL PTRELAIQ+ + +
Sbjct: 67 -------------------KDIDEKEG------------VQAIILTPTRELAIQITDELT 95
Query: 898 DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYL 957
KY V+V + GG S E+Q+R + + ++VATPGR+ + I+ +L K+ +L
Sbjct: 96 RLSKYARVRVLPIYGGQSIERQMRAIKRGVDVIVATPGRIMDHIKR---KTVKLDKVKFL 152
Query: 958 VIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN-SLNLKKGQSKS 1016
V+DE D M++ G +++ I+ + S RQT +FSAT+ +K + N K + K
Sbjct: 153 VLDEADEMLDMGFIDDIEGIIKNI-----SGDRQTMLFSATMPAPIKKLASNYMKKEVKH 207
Query: 1017 KKVSKGDPSIKRLQDL-LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 1075
+ K +++R+Q +K+ + + LC+ + ++
Sbjct: 208 IAIIKNSLTVERIQQFYFEVKNK---------------DKFEALCRIID---------VE 243
Query: 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
P T++FC + V L + + + +H M+Q QR+ L +F++ N L+ATD
Sbjct: 244 EPETTIIFCRTKRGVDELVESMQFRGYNVEGMHGDMSQNQRINTLKKFKENNIDFLVATD 303
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
VAARG+D+ + HVI+Y +P+ E Y+HR GRT RAN EG+ L+
Sbjct: 304 VAARGIDVHNVSHVINYDIPQDMESYVHRIGRTGRANAEGIAYSLV 349
Score = 117 bits (293), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 46/223 (20%)
Query: 161 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 220
++++A+ GF+ P+KIQ+ +P ++ D++G A+TG+GKT+AFG PI++ I
Sbjct: 14 SVLKAIDDMGFEEPSKIQAEAIP-VVIDGYDMIGQAQTGTGKTVAFGAPIISKI------ 66
Query: 221 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 280
++++E+ + A+IL PTRELAIQ+ + +
Sbjct: 67 -------------------KDIDEKEG------------VQAIILTPTRELAIQITDELT 95
Query: 281 DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYL 340
KY V+V + GG S E+Q+R + + ++VATPGR+ + I+ +L K+ +L
Sbjct: 96 RLSKYARVRVLPIYGGQSIERQMRAIKRGVDVIVATPGRIMDHIKR---KTVKLDKVKFL 152
Query: 341 VIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
V+DE D M++ G +++ I+ + S RQTM+ S P
Sbjct: 153 VLDEADEMLDMGFIDDIEGIIKNI-----SGDRQTMLFSATMP 190
Score = 100 bits (249), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 66/108 (61%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
++ P T++FC + V L + + + +H M+Q QR+ L +F++ N L+A
Sbjct: 242 VEEPETTIIFCRTKRGVDELVESMQFRGYNVEGMHGDMSQNQRINTLKKFKENNIDFLVA 301
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
TDVAARG+D+ + HVI+Y +P+ E Y+HR GRT RAN EG+ L+
Sbjct: 302 TDVAARGIDVHNVSHVINYDIPQDMESYVHRIGRTGRANAEGIAYSLV 349
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 12/131 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
A+IL PTRELAIQ+ + + KY V+V + GG S E+Q+R + + ++VATPG +
Sbjct: 77 AIILTPTRELAIQITDELTRLSKYARVRVLPIYGGQSIERQMRAIKRGVDVIVATPGRIM 136
Query: 1415 -SLKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSK 1472
+KR K+++ + K + + D L DM I D E +I+ + R+ L S
Sbjct: 137 DHIKR----KTVKLDKVKFLVLDEADEML-----DMGFIDDIEGIIKNISGDRQTMLFSA 187
Query: 1473 ALVSKRKELQS 1483
+ + K+L S
Sbjct: 188 TMPAPIKKLAS 198
>gi|419706526|ref|ZP_14234046.1| Putative ATP-dependent RNA helicase [Streptococcus salivarius PS4]
gi|383283761|gb|EIC81705.1| Putative ATP-dependent RNA helicase [Streptococcus salivarius PS4]
Length = 527
Score = 203 bits (516), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSENIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 H---IETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGESGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLSIIENLTKK 360
Score = 123 bits (309), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSENIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 H---IETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPD 186
Score = 90.9 bits (224), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K + + I K EK D+ + P ++VF + V L
Sbjct: 196 MKDPEHVKIKAKELTNVNVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ + F++ IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGESGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|22536941|ref|NP_687792.1| DEAD/DEAH box helicase [Streptococcus agalactiae 2603V/R]
gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 2603V/R]
Length = 528
Score = 203 bits (516), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 137/432 (31%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ + I+ A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK+ TE+ N + ALI+APTREL
Sbjct: 61 ----NKIH--TED---------------------------------NTIQALIIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L H++V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
I L++DE D M+ G +++ I+ RV T RQT +FSAT+ +K
Sbjct: 142 NH---IETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDPIKRI-- 191
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
+K ++D ++K + TE + + + + K +EK D+
Sbjct: 192 ----------------GVKFMKDPEHVK----IKATELTNVN--VDQYYVRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++ +
Sbjct: 230 MTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDH 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 IDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 -YLTIIENLTKK 360
Score = 125 bits (313), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 118/233 (50%), Gaps = 48/233 (20%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ + I+ A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK+ TE+ N + ALI+APTREL
Sbjct: 61 ----NKIH--TED---------------------------------NTIQALIIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L H++V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV T RQT++ S P+
Sbjct: 142 NH---IETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPD 186
Score = 90.9 bits (224), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+ K +EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 VRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ + IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRVIRDFKNDHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVSPNEM 348
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L H++V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHIETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus vestibularis
F0396]
gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus vestibularis
F0396]
Length = 529
Score = 203 bits (516), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 210/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL- 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
NK+ TEE N + AL++APTRELA
Sbjct: 61 ---NKIR--TEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLGIIENLTKK 360
Score = 124 bits (310), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 115/232 (49%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL- 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
NK+ TEE N + AL++APTRELA
Sbjct: 61 ---NKIR--TEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPD 186
Score = 91.3 bits (225), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRVIRDFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|225561576|gb|EEH09856.1| ATP-dependent RNA helicase DRS1 [Ajellomyces capsulatus G186AR]
Length = 829
Score = 203 bits (516), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 197/410 (48%), Gaps = 68/410 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F++ I+R L GF TPT IQ +P ALL KD+VG A TGSGKT AF IPIL ++
Sbjct: 310 FSLSRPILRGLTSVGFTTPTPIQRKTIPVALLG-KDVVGGAVTGSGKTGAFIIPILERLL 368
Query: 833 NKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+ PT IL PTRELA+Q
Sbjct: 369 YRPRKVPTSR-------------------------------------VAILMPTRELAVQ 391
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
N +T + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 392 CYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDT 451
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+I LV+DE DRM+E G EL IL T + RQT +FSAT+T+++ + +
Sbjct: 452 LEI--LVLDEADRMLEDGFTDELNEIL-----TTIPKSRQTMLFSATMTNNVDKLIRVGL 504
Query: 1012 GQSKSKKVSKGDPSIKRL-QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 1070
+ V ++ L Q+ + ++ + K L +LCK+ KD
Sbjct: 505 NRPVRLMVDAKKQTVGTLIQEFVRLRPGRE---------EKRLGYLIVLCKNIYKD---- 551
Query: 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
R +VF S R+ + +L LH SM+Q QR+K+++ FRD S
Sbjct: 552 --------RVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSF 603
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
LLATDVA+RGLDI G+E VI+Y P++ EIY+HR GRTARA G L
Sbjct: 604 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTL 653
Score = 110 bits (276), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 115/251 (45%), Gaps = 49/251 (19%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F++ I+R L GF TPT IQ +P ALL KD+VG A TGSGKT AF IPIL ++
Sbjct: 310 FSLSRPILRGLTSVGFTTPTPIQRKTIPVALLG-KDVVGGAVTGSGKTGAFIIPILERLL 368
Query: 216 NKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+ PT IL PTRELA+Q
Sbjct: 369 YRPRKVPTSR-------------------------------------VAILMPTRELAVQ 391
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
N +T + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 392 CYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDT 451
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+I LV+DE DRM+E G EL IL T + RQTM+ S + N +D++
Sbjct: 452 LEI--LVLDEADRMLEDGFTDELNEIL-----TTIPKSRQTMLFSAT---MTNNVDKLIR 501
Query: 395 TETSQPRQTFV 405
++P + V
Sbjct: 502 VGLNRPVRLMV 512
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 12/123 (9%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
+LCK+ KD R +VF S R+ + +L LH SM+Q QR+
Sbjct: 543 VLCKNIYKD------------RVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRI 590
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
K+++ FRD S LLATDVA+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 591 KSVESFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRA 650
Query: 645 VVL 647
L
Sbjct: 651 CTL 653
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 1358 ILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
IL PTRELA+Q N +T + +VGG S +Q IL K P +++ATPG
Sbjct: 381 ILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPG 435
>gi|354604010|ref|ZP_09022003.1| hypothetical protein HMPREF9450_00918 [Alistipes indistinctus YIT
12060]
gi|353348442|gb|EHB92714.1| hypothetical protein HMPREF9450_00918 [Alistipes indistinctus YIT
12060]
Length = 645
Score = 203 bits (516), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 147/470 (31%), Positives = 230/470 (48%), Gaps = 84/470 (17%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK--DIVGAAETGSGKTLAF 823
Q+ E+ + E + A+ KGF+TP+ IQ + +P L K DI+ A+TG+GKT AF
Sbjct: 3 QLDEFTALGLGEKTLPAIKAKGFETPSPIQKLTIPVLLDEDKHNDIIAQAQTGTGKTAAF 62
Query: 824 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883
G+P+L + K + + LIL
Sbjct: 63 GLPVLERLTPK---------------------------------------KGPVQGLILV 83
Query: 884 PTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943
PTRELA+QV +L KY+ + + + GG S +QLR L K I+V TPGR+ + ++
Sbjct: 84 PTRELALQVTEELLSFNKYSKLVITAIYGGASMSEQLRRLGKGVDIVVGTPGRILDHLRR 143
Query: 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003
G +L EL YL++DE D M+ G +++ IL E++ R+ +FSAT+ +
Sbjct: 144 GTLNLKEL---QYLILDEADEMLNMGFIDDVEAIL-----AESNDYRRILLFSATMPARI 195
Query: 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK---IVDLTEKIGITKTLTESKILC 1060
+ L K + ++D+ ++ P DLT++I +
Sbjct: 196 ---VELSK---------------RYMKDVEVLRVPSQEMTTDLTDQIYFE--------VR 229
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
D+ D+ ++ +VFC + +V L LT + LH ++Q QR K L
Sbjct: 230 DSDKFDALTRIIDVEPEFYGIVFCRTKVAVDELVTRLTQRGYAAEGLHGDVSQAQREKIL 289
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+F+++ +IL ATDVAARG+DI + HVI+Y +P+ SE Y+HR GRT RA N G +
Sbjct: 290 KKFKNKQVTILAATDVAARGIDINNLTHVINYSLPQDSESYVHRIGRTGRAGNTGTAITF 349
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPI--DESVLSLIKKRI--DLAKSIE 1226
I S E ++ M E KVD+ PI ++V+ + K RI +LA+ IE
Sbjct: 350 ISSSEYRQFVMM--QREIKVDIKKVPIPTAQNVVEIKKNRIKDELAEIIE 397
Score = 114 bits (285), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 49/237 (20%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK--DIVGAAETGSGKTLAF 206
Q+ E+ + E + A+ KGF+TP+ IQ + +P L K DI+ A+TG+GKT AF
Sbjct: 3 QLDEFTALGLGEKTLPAIKAKGFETPSPIQKLTIPVLLDEDKHNDIIAQAQTGTGKTAAF 62
Query: 207 GIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266
G+P+L + K + + LIL
Sbjct: 63 GLPVLERLTPK---------------------------------------KGPVQGLILV 83
Query: 267 PTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326
PTRELA+QV +L KY+ + + + GG S +QLR L K I+V TPGR+ + ++
Sbjct: 84 PTRELALQVTEELLSFNKYSKLVITAIYGGASMSEQLRRLGKGVDIVVGTPGRILDHLRR 143
Query: 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
G +L EL YL++DE D M+ G +++ IL E++ R+ ++ S P
Sbjct: 144 GTLNLKEL---QYLILDEADEMLNMGFIDDVEAIL-----AESNDYRRILLFSATMP 192
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 65/105 (61%)
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
+VFC + +V L LT + LH ++Q QR K L +F+++ +IL ATDVAARG
Sbjct: 250 IVFCRTKVAVDELVTRLTQRGYAAEGLHGDVSQAQREKILKKFKNKQVTILAATDVAARG 309
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+DI + HVI+Y +P+ SE Y+HR GRT RA N G + I S E
Sbjct: 310 IDINNLTHVINYSLPQDSESYVHRIGRTGRAGNTGTAITFISSSE 354
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
LIL PTRELA+QV +L KY+ + + + GG S +QLR L K I+V TPG +
Sbjct: 79 GLILVPTRELALQVTEELLSFNKYSKLVITAIYGGASMSEQLRRLGKGVDIVVGTPGRIL 138
Query: 1415 -SLKRIDL-AKSIEYL 1428
L+R L K ++YL
Sbjct: 139 DHLRRGTLNLKELQYL 154
Score = 41.2 bits (95), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPI--DESVLSLIK 1295
++++HR GRT RA N G + I S E ++ M E KVD+ PI ++V+ + K
Sbjct: 328 ESYVHRIGRTGRAGNTGTAITFISSSEYRQFVMM--QREIKVDIKKVPIPTAQNVVEIKK 385
Query: 1296 KRI--DLAKSIE 1305
RI +LA+ IE
Sbjct: 386 NRIKDELAEIIE 397
>gi|307167913|gb|EFN61290.1| Probable ATP-dependent RNA helicase DDX49 [Camponotus floridanus]
Length = 457
Score = 203 bits (516), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 148/460 (32%), Positives = 226/460 (49%), Gaps = 82/460 (17%)
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G K PT IQ +P +LA +D +G A+TGSGKTLAF +PIL + E+P
Sbjct: 24 GLKNPTLIQQNCIPR-ILAGEDCIGCAKTGSGKTLAFALPILQKLC---EDPY------- 72
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
++AL+L PTRELA Q+ + GK +K
Sbjct: 73 -----------------------------GIFALVLTPTRELAFQIADQFAAIGKAINLK 103
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966
VVGGM Q L+K PHI+VATPGRL + L L KI +LV+DE DR++
Sbjct: 104 KCVVVGGMDMMVQGLELSKRPHIVVATPGRLAD--HLDSCDTFSLQKIKFLVLDEADRLL 161
Query: 967 ESGHFP-ELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 1025
GHF +LK I V + +Q +FSAT+T +L K K+++
Sbjct: 162 -GGHFDKQLKKIFAAV-----PKQKQVLLFSATMTDAL----------DKVKQIASSKVF 205
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-----LQHPGRT 1080
I +D I + L + +LC D DS+L I G
Sbjct: 206 IWEEED------------DAGIATVRELDQRYVLCPKDVLDSFLVEVIRTFRATNKNGSI 253
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F ++ + L+ +L + + + LHA + Q++RL L +F+ + IL+ATDVAARG
Sbjct: 254 MIFTDTCKHCQLLSMMLNDVGFTNMALHAMIKQKERLAALSKFKSNHVQILIATDVAARG 313
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
LDIP +E V+++ +P + YIHR GRTARA G+ + LI ++I L + +++ K
Sbjct: 314 LDIPTVELVVNHIIPNVPKEYIHRVGRTARAGRNGMAISLITPNDIKLLHMIEDTIGTK- 372
Query: 1201 DLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNW 1240
L ++ +D+ + I +I +AK E++I+ + D +
Sbjct: 373 -LTEYKVDDKEIVTILTQISVAKR----EAEIRLDETDFY 407
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 147/487 (30%), Positives = 207/487 (42%), Gaps = 150/487 (30%)
Query: 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229
G K PT IQ +P +LA +D +G A+TGSGKTLAF +PIL + E+P
Sbjct: 24 GLKNPTLIQQNCIPR-ILAGEDCIGCAKTGSGKTLAFALPILQKLC---EDPY------- 72
Query: 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 289
++AL+L PTRELA Q+ + GK +K
Sbjct: 73 -----------------------------GIFALVLTPTRELAFQIADQFAAIGKAINLK 103
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349
VVGGM Q L+K PHI+VATPGRL + L L KI +LV+DE DR++
Sbjct: 104 KCVVVGGMDMMVQGLELSKRPHIVVATPGRLAD--HLDSCDTFSLQKIKFLVLDEADRLL 161
Query: 350 ESGHF-PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 408
GHF +LK I V P+Q +Q +FSA
Sbjct: 162 -GGHFDKQLKKIFAAV-------PKQ--------------------------KQVLLFSA 187
Query: 409 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468
T+T +L K K+++ I +D I + L +
Sbjct: 188 TMTDAL----------DKVKQIASSKVFIWEEED------------DAGIATVRELDQRY 225
Query: 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 528
+LC D DS+L I RT T K G T++ CK
Sbjct: 226 VLCPKDVLDSFLVEVI-----RTF----------------RATNKNGSIMIFTDT---CK 261
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
H + L+ +L + + + LHA + Q++RL L
Sbjct: 262 H---------------------------CQLLSMMLNDVGFTNMALHAMIKQKERLAALS 294
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+F+ + IL+ATDVAARGLDIP +E V+++ +P + YIHR GRTARA G+ + LI
Sbjct: 295 KFKSNHVQILIATDVAARGLDIPTVELVVNHIIPNVPKEYIHRVGRTARAGRNGMAISLI 354
Query: 649 ESDEIPL 655
++I L
Sbjct: 355 TPNDIKL 361
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 38/64 (59%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y AL+L PTRELA Q+ + GK +K VVGGM Q L+K PHI+VATP
Sbjct: 72 YGIFALVLTPTRELAFQIADQFAAIGKAINLKKCVVVGGMDMMVQGLELSKRPHIVVATP 131
Query: 1412 GALS 1415
G L+
Sbjct: 132 GRLA 135
Score = 43.1 bits (100), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 1224 SIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD 1283
++E + + I N P ++HR GRTARA G+ + LI ++I L + +++ K L +
Sbjct: 318 TVELVVNHIIPNVPKEYIHRVGRTARAGRNGMAISLITPNDIKLLHMIEDTIGTK--LTE 375
Query: 1284 FPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEK 1322
+ +D+ + I +I +AK E++I+ + D + +K
Sbjct: 376 YKVDDKEIVTILTQISVAKR----EAEIRLDETDFYEKK 410
>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
6249]
gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
6249]
Length = 525
Score = 203 bits (516), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 213/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+L+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPEA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 119 bits (297), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 125/262 (47%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L+ I L++DE D M+ G +++ I+ RV + RQT++ S PE + R+
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPE---AIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|15611302|ref|NP_222953.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori J99]
gi|4154758|gb|AAD05818.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
Length = 491
Score = 203 bits (516), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 205/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIKALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFSYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIKALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFSYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIKALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|296271676|ref|YP_003654307.1| DEAD/DEAH box helicase [Arcobacter nitrofigilis DSM 7299]
gi|296095851|gb|ADG91801.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
7299]
Length = 488
Score = 203 bits (516), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 135/427 (31%), Positives = 217/427 (50%), Gaps = 88/427 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
FN E + RA+ GFK P+ IQ +P +L+ KD+VG A+TG+GKT AFG+P++ ++
Sbjct: 6 FNFKENLQRAIEDAGFKEPSPIQQDAIP-VVLSGKDMVGQAQTGTGKTAAFGLPMIN-MM 63
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N +SG+E A+++ PTRELA+QV
Sbjct: 64 N----------GNSGVE-----------------------------AVVIVPTRELAMQV 84
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ + GK + + A V GG S QLR +++ I+VATPGRL + ++ +
Sbjct: 85 SDELFRFGKSSGMNTATVYGGQSYNMQLRNIDRA-SIIVATPGRLIDLLKGKKIDI---- 139
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
K +++V+DE D M++ G ++K I T + RQT +FSAT+
Sbjct: 140 KPSFVVLDEADEMLDMGFLDDIKEIF-----TYLPKERQTLLFSATMP------------ 182
Query: 1013 QSKSKKVSKGDPSIKRL-QDLLNIKSPKIVDLTEKIGITKTLTESKI------LCKHDEK 1065
P+IK+L Q++L K P+ + +T+ +T SKI + +++
Sbjct: 183 -----------PAIKKLAQNIL--KEPEFITVTKA-----EMTNSKITQLFYVVDEYERD 224
Query: 1066 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
D+ + F ++P ++++FC + V RL+ L LH M QRQR + + F+
Sbjct: 225 DALIRLFDFKNPEKSIIFCRTKKEVDRLSTYLVSQGHMAKGLHGDMEQRQREEVIRSFKK 284
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+L+ATDVAARGLD+ + HV +YH+P SE Y+HR GRT RA EG+ + ++ E
Sbjct: 285 GALDVLIATDVAARGLDVNDVSHVFNYHLPFDSESYVHRIGRTGRAGKEGVAISIVTPHE 344
Query: 1186 IPLYIKM 1192
+ K+
Sbjct: 345 FRMIQKI 351
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 139/501 (27%), Positives = 222/501 (44%), Gaps = 160/501 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
FN E + RA+ GFK P+ IQ +P +L+ KD+VG A+TG+GKT AFG+P++ ++
Sbjct: 6 FNFKENLQRAIEDAGFKEPSPIQQDAIP-VVLSGKDMVGQAQTGTGKTAAFGLPMIN-MM 63
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N +SG+E A+++ PTRELA+QV
Sbjct: 64 N----------GNSGVE-----------------------------AVVIVPTRELAMQV 84
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ + GK + + A V GG S QLR +++ I+VATPGRL + ++ +
Sbjct: 85 SDELFRFGKSSGMNTATVYGGQSYNMQLRNIDRA-SIIVATPGRLIDLLKGKKIDI---- 139
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
K +++V+DE D M++ G LD + T P++
Sbjct: 140 KPSFVVLDEADEMLDMG-------FLDDIKEIFTYLPKE--------------------- 171
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL-QDLLNIKSPKIVDL 454
RQT +FSAT+ P+IK+L Q++L K P+ + +
Sbjct: 172 -----RQTLLFSATMP-----------------------PAIKKLAQNIL--KEPEFITV 201
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
T+ +T SKI + L+Y +VD
Sbjct: 202 TKA-----EMTNSKI--------TQLFY------------------------VVD----- 219
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
+++ D+ + F ++P ++++FC + V RL+ L L
Sbjct: 220 -------------EYERDDALIRLFDFKNPEKSIIFCRTKKEVDRLSTYLVSQGHMAKGL 266
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M QRQR + + F+ +L+ATDVAARGLD+ + HV +YH+P SE Y+HR GR
Sbjct: 267 HGDMEQRQREEVIRSFKKGALDVLIATDVAARGLDVNDVSHVFNYHLPFDSESYVHRIGR 326
Query: 635 TARANNEGLTVVLIESDEIPL 655
T RA EG+ + ++ E +
Sbjct: 327 TGRAGKEGVAISIVTPHEFRM 347
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 1355 DALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+A+++ PTRELA+QV + + GK + + A V GG S QLR +++ I+VATPG L
Sbjct: 70 EAVVIVPTRELAMQVSDELFRFGKSSGMNTATVYGGQSYNMQLRNIDRA-SIIVATPGRL 128
Query: 1415 SLKRIDL--AKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSK 1472
IDL K I+ S + + D L DM + D + + R+ L S
Sbjct: 129 ----IDLLKGKKIDIKPSFVVLDEADEML-----DMGFLDDIKEIFTYLPKERQTLLFSA 179
Query: 1473 AL 1474
+
Sbjct: 180 TM 181
>gi|384895629|ref|YP_005769618.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
gi|315586245|gb|ADU40626.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
Length = 492
Score = 203 bits (516), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 205/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ + + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAKAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ + + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAKAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
Length = 525
Score = 203 bits (516), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 213/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ ++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 THLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (289), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 98.6 bits (244), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ + ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTHLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
Length = 510
Score = 203 bits (516), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 148/459 (32%), Positives = 223/459 (48%), Gaps = 72/459 (15%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ I+RA+ +G+ PT IQ+ +P L R DI+GAA+TG+GKT +F +P+L
Sbjct: 3 FTELNLTPEILRAIADQGYTDPTPIQTQAIPHILEGR-DIMGAAQTGTGKTASFTLPMLN 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
L + ANT+ R+ + LIL PTRELA
Sbjct: 62 -----------------------------LLQSGANTS--ASPARHPIRTLILVPTRELA 90
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
IQV + GKY P++ A V GG+ E Q R L ILVATPGRL + +Q +L+
Sbjct: 91 IQVHESVKTYGKYLPLRYAAVYGGVDMEPQTRELRAGVEILVATPGRLLDHVQQKAINLS 150
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
K+ L++DE DRM++ G P++K IL + SQ RQ+ +FSAT +
Sbjct: 151 ---KVEILILDEADRMLDMGFLPDIKRILALLP----SQ-RQSLMFSATFSDE------- 195
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
IK+L L ++ P +V++ + IT+ +T + K L
Sbjct: 196 ----------------IKKLAGKL-LREPVLVEVARRNTITELITHVVHPVVRERKRELL 238
Query: 1070 YYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ I Q + LVF + RL L S +H Q QR + L +F+
Sbjct: 239 AHLIKSQDLQQVLVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFKQGVV 298
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI + HV+++ +P E Y+HR GRT RA +G + L+ DE L
Sbjct: 299 RVLVATDVAARGLDIEELPHVVNFELPTNPEDYVHRIGRTGRAGTKGDAVSLVCEDEAEL 358
Query: 1189 YIKMFNSLEKKVD---LPDF----PIDESVLSLIKKRID 1220
+ L+ K++ +P F P+ + ++ RID
Sbjct: 359 LKGIEKLLKFKLESKVVPGFEPETPVAQGEAAISHGRID 397
Score = 130 bits (327), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 40/230 (17%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ I+RA+ +G+ PT IQ+ +P L R DI+GAA+TG+GKT +F +P+L
Sbjct: 3 FTELNLTPEILRAIADQGYTDPTPIQTQAIPHILEGR-DIMGAAQTGTGKTASFTLPMLN 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
L + ANT+ R+ + LIL PTRELA
Sbjct: 62 -----------------------------LLQSGANTS--ASPARHPIRTLILVPTRELA 90
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
IQV + GKY P++ A V GG+ E Q R L ILVATPGRL + +Q +L+
Sbjct: 91 IQVHESVKTYGKYLPLRYAAVYGGVDMEPQTRELRAGVEILVATPGRLLDHVQQKAINLS 150
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
K+ L++DE DRM++ G P++K IL + SQ RQ+++ S F
Sbjct: 151 ---KVEILILDEADRMLDMGFLPDIKRILALL----PSQ-RQSLMFSATF 192
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 3/168 (1%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRT 547
T +EI+ L ++ P +V++ + IT+ +T + K L + I Q +
Sbjct: 191 TFSDEIKKLAGKLLREPVLVEVARRNTITELITHVVHPVVRERKRELLAHLIKSQDLQQV 250
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + RL L S +H Q QR + L +F+ +L+ATDVAARG
Sbjct: 251 LVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFKQGVVRVLVATDVAARG 310
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDI + HV+++ +P E Y+HR GRT RA +G V L+ DE L
Sbjct: 311 LDIEELPHVVNFELPTNPEDYVHRIGRTGRAGTKGDAVSLVCEDEAEL 358
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 71/142 (50%), Gaps = 19/142 (13%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ LIL PTRELAIQV + GKY P++ A V GG+ E Q R L ILVAT
Sbjct: 75 RHPIRTLILVPTRELAIQVHESVKTYGKYLPLRYAAVYGGVDMEPQTRELRAGVEILVAT 134
Query: 1411 PGAL----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI-IIDDENLIQPKANSR 1465
PG L K I+L+K +E L L++A + +D+ + D I S+
Sbjct: 135 PGRLLDHVQQKAINLSK-VEIL-----------ILDEADRMLDMGFLPDIKRILALLPSQ 182
Query: 1466 ENALMSKALVSKRKELQSLLGK 1487
+LM A S E++ L GK
Sbjct: 183 RQSLMFSATFS--DEIKKLAGK 202
>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|339301744|ref|ZP_08650830.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
gi|417005047|ref|ZP_11943640.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|421146787|ref|ZP_15606490.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
gi|341576860|gb|EGS27268.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|401686494|gb|EJS82471.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
Length = 528
Score = 203 bits (516), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 215/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ + I+ A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL- 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
NK+ TE+ N + ALI+APTRELA
Sbjct: 61 ---NKIH--TED---------------------------------NTIQALIIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L H++V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +K
Sbjct: 143 H---IETLILDEADEMLNMGFLEDIEAIISRV-----PEARQTLLFSATMPDPIKRI--- 191
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
+K ++D ++K + TE + + + + K +EK D+
Sbjct: 192 ---------------GVKFMKDPEHVK----IKATELTNVN--VDQYYVRVKENEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++ +
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLTIIENLTKK 360
Score = 124 bits (312), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 117/232 (50%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ + I+ A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL- 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
NK+ TE+ N + ALI+APTRELA
Sbjct: 61 ---NKIH--TED---------------------------------NTIQALIIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L H++V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 H---IETLILDEADEMLNMGFLEDIEAIISRV-----PEARQTLLFSATMPD 186
Score = 90.9 bits (224), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+ K +EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 VRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ + IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRVIRDFKNDHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVSPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L H++V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHIETLI-LDEADEML-----NMGFLEDIEAIISRVPEARQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|420527527|ref|ZP_15025921.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25c]
gi|420529549|ref|ZP_15027936.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25d]
gi|393134653|gb|EJC35062.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25c]
gi|393137318|gb|EJC37704.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25d]
Length = 491
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 208/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + +E Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYLP-SEV----QILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (292), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + +E Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYLP-SEV----QILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|375090043|ref|ZP_09736362.1| hypothetical protein HMPREF9708_00752 [Facklamia languida CCUG 37842]
gi|374565936|gb|EHR37191.1| hypothetical protein HMPREF9708_00752 [Facklamia languida CCUG 37842]
Length = 499
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 141/428 (32%), Positives = 210/428 (49%), Gaps = 83/428 (19%)
Query: 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844
Q GF+ PT IQ +P AL KD++G A+TG+GKT AFG+P+L + D N
Sbjct: 18 QMGFEEPTPIQQQAIPLALQG-KDLIGQAQTGTGKTAAFGLPLLQHL----------DRN 66
Query: 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 904
S ++ L++ PTRELAIQVQ + GK
Sbjct: 67 QSAIQ-----------------------------GLVVTPTRELAIQVQEELYRLGKGVR 97
Query: 905 VKVACVVGGMSTEKQL-RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYL---VID 960
+V V GG S KQ+ RI + P I+V TPGRL + IQ ++ K N+L V+D
Sbjct: 98 ARVYVVYGGTSLSKQIERIKRQQPQIIVGTPGRLLDLIQ------RKVLKFNHLQTLVLD 151
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 1020
E D M+ G ++K I+ T + RQT +FSAT+
Sbjct: 152 EADEMLNMGFIEDIKAIIQ-----ATPKNRQTLLFSATMP-------------------- 186
Query: 1021 KGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL-CKHDEKDSYLYYFI-LQHPG 1078
P I+ L + P++V + E +T L E C+ DEK L F+ +Q P
Sbjct: 187 ---PVIRDLSGQF-LTQPELVKI-EAQSMTADLVEQYFTKCRDDEKFDLLTRFLDVQTPK 241
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+ ++FC + V + + L++ +H + Q++R ++ FR + +L+ATDVAA
Sbjct: 242 QAIIFCRTKKRVDEVGRGLSLRGYQAEMIHGDITQQKRTSVINAFRKEEVELLVATDVAA 301
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDI G+ HV +Y + + E Y+HR GRT RA NEG++L L++ +E+ Y++ L
Sbjct: 302 RGLDISGVTHVYNYDISQDPESYVHRIGRTGRAGNEGISLTLVQPNEMA-YLREIEQLIG 360
Query: 1199 KVDLPDFP 1206
K LP P
Sbjct: 361 KQMLPMRP 368
Score = 110 bits (274), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 106/220 (48%), Gaps = 55/220 (25%)
Query: 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227
Q GF+ PT IQ +P AL KD++G A+TG+GKT AFG+P+L + D N
Sbjct: 18 QMGFEEPTPIQQQAIPLALQG-KDLIGQAQTGTGKTAAFGLPLLQHL----------DRN 66
Query: 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 287
S ++ L++ PTRELAIQVQ + GK
Sbjct: 67 QSAIQ-----------------------------GLVVTPTRELAIQVQEELYRLGKGVR 97
Query: 288 VKVACVVGGMSTEKQL-RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY---LVID 343
+V V GG S KQ+ RI + P I+V TPGRL + IQ ++ K N+ LV+D
Sbjct: 98 ARVYVVYGGTSLSKQIERIKRQQPQIIVGTPGRLLDLIQ------RKVLKFNHLQTLVLD 151
Query: 344 ETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
E D M+ G ++K I+ T + RQT++ S P
Sbjct: 152 EADEMLNMGFIEDIKAIIQ-----ATPKNRQTLLFSATMP 186
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 5/167 (2%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKIL-CKHDEKDSYLYYFI-LQHPGR 546
T+ I+DL + P++V + E +T L E C+ DEK L F+ +Q P +
Sbjct: 184 TMPPVIRDLSGQFLTQPELVKI-EAQSMTADLVEQYFTKCRDDEKFDLLTRFLDVQTPKQ 242
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
++FC + V + + L++ +H + Q++R ++ FR + +L+ATDVAAR
Sbjct: 243 AIIFCRTKKRVDEVGRGLSLRGYQAEMIHGDITQQKRTSVINAFRKEEVELLVATDVAAR 302
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
GLDI G+ HV +Y + + E Y+HR GRT RA NEG+++ L++ +E+
Sbjct: 303 GLDISGVTHVYNYDISQDPESYVHRIGRTGRAGNEGISLTLVQPNEM 349
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL-RILNKCPHILVATP 1411
+ L++ PTRELAIQVQ + GK +V V GG S KQ+ RI + P I+V TP
Sbjct: 69 AIQGLVVTPTRELAIQVQEELYRLGKGVRARVYVVYGGTSLSKQIERIKRQQPQIIVGTP 128
Query: 1412 GALSLKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSREN 1467
G L +DL + +L++ + + D L +M I D + +IQ +R+
Sbjct: 129 GRL----LDLIQRKVLKFNHLQTLV-LDEADEML-----NMGFIEDIKAIIQATPKNRQT 178
Query: 1468 ALMSKAL 1474
L S +
Sbjct: 179 LLFSATM 185
Score = 44.3 bits (103), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1285
P++++HR GRT RA NEG++L L++ +E+ Y++ L K LP P
Sbjct: 321 PESYVHRIGRTGRAGNEGISLTLVQPNEMA-YLREIEQLIGKQMLPMRP 368
>gi|386755314|ref|YP_006228531.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan18]
gi|384561572|gb|AFI02038.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan18]
Length = 492
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRFSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 FSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae NEM316]
gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 18RS21]
gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|406709269|ref|YP_006763995.1| ATP-dependent RNA helicase [Streptococcus agalactiae GD201008-001]
gi|424049656|ref|ZP_17787207.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae A909]
gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 18RS21]
gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|389648929|gb|EIM70418.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|406650154|gb|AFS45555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae GD201008-001]
Length = 528
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 137/432 (31%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ + I+ A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK+ TE+ N + ALI+APTREL
Sbjct: 61 ----NKIH--TED---------------------------------NTIQALIIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L H++V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
I L++DE D M+ G +++ I+ RV T RQT +FSAT+ +K
Sbjct: 142 NH---IETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPDPIKRI-- 191
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
+K ++D ++K + TE + + + + K +EK D+
Sbjct: 192 ----------------GVKFMKDPEHVK----IKATELTNVN--VDQYYVRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++ +
Sbjct: 230 MTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDH 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 IDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 -YLTIIENLTKK 360
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 118/233 (50%), Gaps = 48/233 (20%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ + I+ A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK+ TE+ N + ALI+APTREL
Sbjct: 61 ----NKIH--TED---------------------------------NTIQALIIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L H++V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV T RQT++ S P+
Sbjct: 142 NH---IETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPD 186
Score = 90.9 bits (224), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+ K +EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 VRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ + IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRVIRDFKNDHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVSPNEM 348
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L H++V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHIETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|255954845|ref|XP_002568175.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589886|emb|CAP96040.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 496
Score = 202 bits (515), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 215/427 (50%), Gaps = 63/427 (14%)
Query: 774 NIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
++PE + Q K F PT IQS P L A +D++G AETGSGKTL FG+P L ++
Sbjct: 85 HLPECDVGLYTQLKSFPAPTPIQSTTWP-LLFAGRDVIGIAETGSGKTLGFGLPCLKKLI 143
Query: 833 N-KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+ K P + A+I++PTRELA+Q
Sbjct: 144 DSKSSKPCQPK------------------------------------AVIISPTRELAMQ 167
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
+ + ++ G + +V C+ GG+ ++Q R L K I+VATPGRL + G +L
Sbjct: 168 IYDQLVKFGHHEKTQVTCIYGGVGKDEQRRALQKA-AIVVATPGRLKDLQNDGSI---DL 223
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
K+NYLV+DE DRM++ G ++K+IL + ++ RQT +F+AT S+++ L
Sbjct: 224 GKVNYLVLDEADRMLDKGFEQDIKDILKPMPVSR----RQTVMFTATWPRSVRD-LAATF 278
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG-ITKTLTESKILCKHDEKDSYLY 1070
++ GDPS + + ++VD EK G + + LT+S+ K EK
Sbjct: 279 MKTPVTVTIGGDPSADPRANTRIKQVVEVVDGREKEGRLVQLLTKSQRGQKSPEK----- 333
Query: 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
LVFC R+ L+ + +H +NQ R +NLD F+ N ++
Sbjct: 334 ---------VLVFCLYKKEAMRIENLIRNKGFAVAGIHGDLNQSDRFRNLDAFKKGNATV 384
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L+ATDVAARGLDIP ++ VI+ P T E Y+HR GRT RA +GL + + ++ L
Sbjct: 385 LIATDVAARGLDIPNVKLVINVTFPLTVEDYVHRIGRTGRAGADGLAITMFTENDKGLSG 444
Query: 1191 KMFNSLE 1197
+ N L+
Sbjct: 445 GLINVLK 451
Score = 116 bits (291), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 47/229 (20%)
Query: 157 NIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
++PE + Q K F PT IQS P L A +D++G AETGSGKTL FG+P L ++
Sbjct: 85 HLPECDVGLYTQLKSFPAPTPIQSTTWP-LLFAGRDVIGIAETGSGKTLGFGLPCLKKLI 143
Query: 216 N-KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+ K P + A+I++PTRELA+Q
Sbjct: 144 DSKSSKPCQPK------------------------------------AVIISPTRELAMQ 167
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
+ + ++ G + +V C+ GG+ ++Q R L K I+VATPGRL + G +L
Sbjct: 168 IYDQLVKFGHHEKTQVTCIYGGVGKDEQRRALQKA-AIVVATPGRLKDLQNDGSI---DL 223
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
K+NYLV+DE DRM++ G ++K+IL + ++ RQT++ + +P
Sbjct: 224 GKVNYLVLDEADRMLDKGFEQDIKDILKPMPVSR----RQTVMFTATWP 268
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%)
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
+ P + LVFC R+ L+ + +H +NQ R +NLD F+ N ++L+AT
Sbjct: 329 KSPEKVLVFCLYKKEAMRIENLIRNKGFAVAGIHGDLNQSDRFRNLDAFKKGNATVLIAT 388
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DVAARGLDIP ++ VI+ P T E Y+HR GRT RA +GL + + ++
Sbjct: 389 DVAARGLDIPNVKLVINVTFPLTVEDYVHRIGRTGRAGADGLAITMFTEND 439
Score = 57.0 bits (136), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 15/122 (12%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
A+I++PTRELA+Q+ + ++ G + +V C+ GG+ ++Q R L K I+VATPG L
Sbjct: 155 AVIISPTRELAMQIYDQLVKFGHHEKTQVTCIYGGVGKDEQRRALQKA-AIVVATPGRLK 213
Query: 1415 ---SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+ IDL K + YL + D L+K + D +++++P SR +M
Sbjct: 214 DLQNDGSIDLGK-VNYLVL----DEADRMLDKGFEQ-----DIKDILKPMPVSRRQTVMF 263
Query: 1472 KA 1473
A
Sbjct: 264 TA 265
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 202 bits (515), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 154/523 (29%), Positives = 244/523 (46%), Gaps = 88/523 (16%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M ++ + N+ I++A+ + GF+ + IQ+ +P + KDI+G A+TG+GKT AFGIP
Sbjct: 1 MTKFSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQG-KDIIGQAQTGTGKTAAFGIP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
++ E+++ S N + +I+APTR
Sbjct: 60 LI----------------------------EKIDHRSRN-----------IQGIIIAPTR 80
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELAIQV + G+Y+ V V V GG +Q+R L P I+V TPGR+ + I G
Sbjct: 81 ELAIQVSEELYRIGQYSRVHVLAVYGGQDISRQIRALKNHPQIIVGTPGRILDHIHRGTL 140
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
L ++ LV+DE D M+ G +++ IL V + RQT +FSAT+
Sbjct: 141 KLDH---VHTLVLDEADEMLNMGFIDDIEAILSTV-----PKDRQTMLFSATMP------ 186
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
DP K + +N +P++V + K ++ + I + EK
Sbjct: 187 ----------------DPIRKIAERFMN--NPELVRVKAKEMTVPSIEQYYIKVQEREKF 228
Query: 1067 SYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
L + +Q P +VF + V L LT+ +H ++Q +RL L +F+D
Sbjct: 229 DVLSRLLDVQSPDLAIVFGRTKRRVDELANALTLRGYLAEGIHGDLSQAKRLSVLRKFKD 288
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA EG+ + + E
Sbjct: 289 GKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPRE 348
Query: 1186 IPLYIKMFNSLEKKVDLPDFP--IDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHR 1243
+ Y+K KK LP P DE+ ++R+ ++E + IK+ D ++
Sbjct: 349 MG-YLKTVEQTTKKRMLPMRPPTWDEAFEG--QQRV----TMERIGETIKEGNIDEYMSV 401
Query: 1244 SGR------TARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1280
+ A L L+ E D+ P++I L K D
Sbjct: 402 AKELLAEYDPAEVTAAALKLMTKEPDKTPVHISEERPLPHKKD 444
Score = 118 bits (295), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 49/243 (20%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M ++ + N+ I++A+ + GF+ + IQ+ +P + KDI+G A+TG+GKT AFGIP
Sbjct: 1 MTKFSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQG-KDIIGQAQTGTGKTAAFGIP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
++ E+++ S N + +I+APTR
Sbjct: 60 LI----------------------------EKIDHRSRN-----------IQGIIIAPTR 80
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELAIQV + G+Y+ V V V GG +Q+R L P I+V TPGR+ + I G
Sbjct: 81 ELAIQVSEELYRIGQYSRVHVLAVYGGQDISRQIRALKNHPQIIVGTPGRILDHIHRGTL 140
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNI 388
L ++ LV+DE D M+ G +++ IL V + RQTM+ S P+ ++ I
Sbjct: 141 KLDH---VHTLVLDEADEMLNMGFIDDIEAILSTV-----PKDRQTMLFSATMPDPIRKI 192
Query: 389 LDR 391
+R
Sbjct: 193 AER 195
Score = 100 bits (248), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 145/311 (46%), Gaps = 31/311 (9%)
Query: 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 534
++ + L+ + P R + E + +P++V + K ++ + I + EK
Sbjct: 175 DRQTMLFSATMPDPIRKIAERF-----MNNPELVRVKAKEMTVPSIEQYYIKVQEREKFD 229
Query: 535 YLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 593
L + +Q P +VF + V L LT+ +H ++Q +RL L +F+D
Sbjct: 230 VLSRLLDVQSPDLAIVFGRTKRRVDELANALTLRGYLAEGIHGDLSQAKRLSVLRKFKDG 289
Query: 594 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA EG+ + + E+
Sbjct: 290 KIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREM 349
Query: 654 P-LKTKFNLQE-----------EENNEEEER------AEADKEKTEDINVTVSSKKKKLK 695
LKT + +E E ++R E KE D ++V+ K+L
Sbjct: 350 GYLKTVEQTTKKRMLPMRPPTWDEAFEGQQRVTMERIGETIKEGNIDEYMSVA---KELL 406
Query: 696 RKQNPSQVEVSELSANTNDPDDQ-VNKTEEIQSDEPHSKKLKQKKKKKQTY-TSANKELL 753
+ +P++V + L T +PD V+ +EE PH K ++ K +Y S NK
Sbjct: 407 AEYDPAEVTAAALKLMTKEPDKTPVHISEE--RPLPHKKDHSRRGKPAGSYKGSYNKGRK 464
Query: 754 EVDTSNNEDMF 764
T+ N F
Sbjct: 465 PRRTTTNRKPF 475
Score = 61.6 bits (148), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 1347 SRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 1406
SRN++ +I+APTRELAIQV + G+Y+ V V V GG +Q+R L P I
Sbjct: 68 SRNIQ----GIIIAPTRELAIQVSEELYRIGQYSRVHVLAVYGGQDISRQIRALKNHPQI 123
Query: 1407 LVATPGAL 1414
+V TPG +
Sbjct: 124 IVGTPGRI 131
>gi|385221749|ref|YP_005770882.1| ATP-dependent RNA helicase [Helicobacter pylori SouthAfrica7]
gi|317010528|gb|ADU84275.1| ATP-dependent RNA helicase [Helicobacter pylori SouthAfrica7]
Length = 494
Score = 202 bits (515), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 209/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P A+L +D++ A+TG+GKT AF +PI +N L+
Sbjct: 31 ESVLKSVYEAGFTSPSPIQEKAIP-AILQGRDVIAQAQTGTGKTAAFALPI----INNLK 85
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 86 N------------------------------------NHTIEALVITPTRELAMQISDEI 109
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 110 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 166
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 167 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMP---------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
+P IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ------EP-IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMRLLDTQA 258
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 259 PEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 318
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 319 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 378
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 379 DSEIELFEIP 388
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 119/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P A+L +D++ A+TG+GKT AF +PI +N L+
Sbjct: 31 ESVLKSVYEAGFTSPSPIQEKAIP-AILQGRDVIAQAQTGTGKTAAFALPI----INNLK 85
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 86 N------------------------------------NHTIEALVITPTRELAMQISDEI 109
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 110 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 166
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 167 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 215
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 240 VINEHERSEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRR 299
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 300 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 359
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 360 ITLV----TPLEYKELLRMQKEIDSEIE 383
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 88 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 147
Query: 1412 GAL 1414
G L
Sbjct: 148 GRL 150
>gi|420408247|ref|ZP_14907406.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4216]
gi|393025732|gb|EJB26838.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4216]
Length = 492
Score = 202 bits (515), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 208/430 (48%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + +E Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYLP-SEV----QILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRASVMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (292), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + +E Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYLP-SEV----QILLFSATMPEPIKRLADKI 213
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASVMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|341892664|gb|EGT48599.1| hypothetical protein CAEBREN_09605 [Caenorhabditis brenneri]
Length = 813
Score = 202 bits (515), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 138/458 (30%), Positives = 223/458 (48%), Gaps = 88/458 (19%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + TI +A+ +KGF PT IQ +P ++ KD+V + TGSGKT AF IP+L
Sbjct: 26 WQQLGLDHTIFKAIEKKGFSQPTPIQRKTIP-CIMDGKDVVAMSRTGSGKTAAFVIPML- 83
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
KL+ + + AL+++PTRELA
Sbjct: 84 ---QKLKG----------------------------------RDTKGIRALMVSPTRELA 106
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q + + G++T ++ AC+VGG E+Q +++ P IL+ATPGRL I L+
Sbjct: 107 LQTFKVVKELGRFTGLRCACLVGGDVLEEQFSTIHENPDILLATPGRLLHVIVEMDLRLS 166
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ Y+V DE DR+ E G +L L R+ + RQT +FSATL L +
Sbjct: 167 F---VQYVVFDEADRLFEMGFQDQLTETLKRI-----PESRQTLLFSATLPKMLVDFA-- 216
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
K DP + RL D+ EK+ + L+ +C+ DEK
Sbjct: 217 --------KAGLTDPMLVRL------------DVDEKV--SDKLSMVFCMCRPDEK---- 250
Query: 1070 YYFILQHPGR--------TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
F L H R T++FC ++ V+ + +L +++ ++ R +N+
Sbjct: 251 -LFALLHLCRRMDRENKQTVIFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKQNIQ 309
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
+F ++ N+IL+ TDVAARG+DIP ++ VI+ H P +++++HR GR ARA G + LI
Sbjct: 310 KFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPSKAKLFVHRVGRVARAGRSGTAISLI 369
Query: 1182 ESDEIPLYIKMFNSLEKKV----DLPDFPIDESVLSLI 1215
+DE+P +F L K + D ++ DE+++ +
Sbjct: 370 ANDELPYLTDLFMFLGKPIKFAQDGSEYKEDETLIGRV 407
Score = 166 bits (421), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 141/506 (27%), Positives = 217/506 (42%), Gaps = 154/506 (30%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + + TI +A+ +KGF PT IQ +P ++ KD+V + TGSGKT AF IP+L
Sbjct: 26 WQQLGLDHTIFKAIEKKGFSQPTPIQRKTIP-CIMDGKDVVAMSRTGSGKTAAFVIPML- 83
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
KL+ + + AL+++PTRELA
Sbjct: 84 ---QKLKG----------------------------------RDTKGIRALMVSPTRELA 106
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q + + G++T ++ AC+VGG E+Q +++ P IL+ATPGRL I L+
Sbjct: 107 LQTFKVVKELGRFTGLRCACLVGGDVLEEQFSTIHENPDILLATPGRLLHVIVEMDLRLS 166
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ Y+V DE DR+ E G +L L R+ PE
Sbjct: 167 F---VQYVVFDEADRLFEMGFQDQLTETLKRI------------------PE-------- 197
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
RQT +FSATL L + K DP + RL
Sbjct: 198 -------SRQTLLFSATLPKMLVDFA----------KAGLTDPMLVRL------------ 228
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE-IQDLLNIKSPKIVDLT 511
D+ EK ++ L+ +C+ DEK F L H R + E Q ++ + K V+
Sbjct: 229 DVDEK--VSDKLSMVFCMCRPDEK-----LFALLHLCRRMDRENKQTVIFCATMKHVEYV 281
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+GI L + I C S++Y
Sbjct: 282 --VGI---LHRAGIDC------SFVY---------------------------------- 296
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+ ++ R +N+ +F ++ N+IL+ TDVAARG+DIP ++ VI+ H P +++++HR
Sbjct: 297 ----SQLDATARKQNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPSKAKLFVHR 352
Query: 632 SGRTARANNEGLTVVLIESDEIPLKT 657
GR ARA G + LI +DE+P T
Sbjct: 353 VGRVARAGRSGTAISLIANDELPYLT 378
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+++PTRELA+Q + + G++T ++ AC+VGG E+Q +++ P IL+ATPG L
Sbjct: 96 ALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDVLEEQFSTIHENPDILLATPGRL 154
>gi|240274680|gb|EER38196.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H143]
Length = 828
Score = 202 bits (515), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 198/410 (48%), Gaps = 68/410 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F++ I+R L GF TPT IQ +P ALL KD+VG A TGSGKT AF IPIL ++
Sbjct: 309 FSLSRPILRGLTFVGFTTPTPIQRKTIPVALLG-KDVVGGAVTGSGKTGAFIIPILERLL 367
Query: 833 NKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+ PT +IL PTRELA+Q
Sbjct: 368 YRPRKVPTSR-------------------------------------VVILMPTRELAVQ 390
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
N +T + +VGG S +Q IL K P +++ATPGR + ++ +
Sbjct: 391 CYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDT 450
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+I LV+DE DRM+E G EL IL T + RQT +FSAT+T+++ + +
Sbjct: 451 LEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMTNNVDKLIRVGL 503
Query: 1012 GQSKSKKVSKGDPSIKRL-QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 1070
+ V ++ L Q+ + ++ + K L +LCK+ KD
Sbjct: 504 NRPVRLMVDAKKQTVGTLIQEFVRLRPGRE---------EKRLGYLIVLCKNIYKD---- 550
Query: 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
R +VF S R+ + +L LH SM+Q QR+K+++ FRD S
Sbjct: 551 --------RVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVEGFRDGKVSF 602
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
LLATDVA+RGLDI G+E VI+Y P++ EIY+HR GRTARA G L
Sbjct: 603 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTL 652
Score = 111 bits (277), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 147/331 (44%), Gaps = 64/331 (19%)
Query: 84 SQVEVSELSANTNDPDDQ-----VNKTEEIQSDEPS---SKKLKQKKKKKQTYTSANKEL 135
S+ E S+N D D+ V ++I SD+ S S+ + +K+K + K
Sbjct: 236 SEGESEADSSNDTDSDNDSVASPVPHPDDITSDDGSGDESEDAAEIEKQKSFFAPEEK-- 293
Query: 136 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 195
S N D+ + F++ I+R L GF TPT IQ +P ALL KD+VG
Sbjct: 294 ----ASANGDL-KSAKSFQAFSLSRPILRGLTFVGFTTPTPIQRKTIPVALLG-KDVVGG 347
Query: 196 AETGSGKTLAFGIPILTGIVNKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254
A TGSGKT AF IPIL ++ + PT
Sbjct: 348 AVTGSGKTGAFIIPILERLLYRPRKVPTSR------------------------------ 377
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
+IL PTRELA+Q N +T + +VGG S +Q IL K P +++
Sbjct: 378 -------VVILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVII 430
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGR + ++ + +I LV+DE DRM+E G EL IL T + RQ
Sbjct: 431 ATPGRFIDHMRNSASFTVDTLEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQ 483
Query: 375 TMIESGHFPELKNILDRVTMTETSQPRQTFV 405
TM+ S + N +D++ ++P + V
Sbjct: 484 TMLFSAT---MTNNVDKLIRVGLNRPVRLMV 511
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 12/123 (9%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
+LCK+ KD R +VF S R+ + +L LH SM+Q QR+
Sbjct: 542 VLCKNIYKD------------RVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRI 589
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
K+++ FRD S LLATDVA+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 590 KSVEGFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRA 649
Query: 645 VVL 647
L
Sbjct: 650 CTL 652
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+IL PTRELA+Q N +T + +VGG S +Q IL K P +++ATPG
Sbjct: 379 VILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPG 434
>gi|38198641|ref|NP_938179.1| probable ATP-dependent RNA helicase DDX49 [Danio rerio]
gi|28839770|gb|AAH47834.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
Length = 468
Score = 202 bits (515), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 145/450 (32%), Positives = 221/450 (49%), Gaps = 79/450 (17%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
MA + + E +I+ Q G PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIP-AILDGRDCMGCAKTGSGKTAAFVLP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
VL++L E+ ++ L+L PTR
Sbjct: 60 ----------------------------VLQKLSEDPYG-----------VFCLVLTPTR 80
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA Q+ GK +K +VGGM Q L+K PH++VATPGRL + I+
Sbjct: 81 ELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPHVVVATPGRLADHIRSSD- 139
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
L +I +L++DE DR++E G K++ V ++ RQT +FSATLT +L+
Sbjct: 140 -TINLNRIQFLIMDEADRLLEQGCTDFTKDL--EVILSAVPAKRQTLLFSATLTDTLQ-- 194
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
+LQ + + P + + + L + IL KD
Sbjct: 195 ---------------------QLQSI-AMNRPFFWEHKSDVQTVEELDQRFILTPEKVKD 232
Query: 1067 SYLYYFIL----QHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
+YL + I +H +++ F N+ S + LT +L + LH+ M QRQR NL
Sbjct: 233 AYLVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLA 292
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
+F+ IL+ATDVAARGLDIP ++ VI+++ P +IYIHR GRTARA G+++ L+
Sbjct: 293 KFKSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLV 352
Query: 1182 ESDEIPLYIKMFNSLEK--KVDLPDFPIDE 1209
+I L N++E+ + L +FPI+E
Sbjct: 353 TQYDIHL----INAIEEQNQTKLKEFPIEE 378
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 100/183 (54%), Gaps = 10/183 (5%)
Query: 491 TLCEEIQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHP 544
TL + +Q L +I P + + + L + IL KD+YL + I +H
Sbjct: 188 TLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAYLVHLIQTFQDEHD 247
Query: 545 GRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++ F N+ S + LT +L + LH+ M QRQR NL +F+ IL+ATDV
Sbjct: 248 DWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVFKILIATDV 307
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQE 663
AARGLDIP ++ VI+++ P +IYIHR GRTARA G+++ L+ +I L N E
Sbjct: 308 AARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL---INAIE 364
Query: 664 EEN 666
E+N
Sbjct: 365 EQN 367
Score = 103 bits (256), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 116/266 (43%), Gaps = 72/266 (27%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
MA + + E +I+ Q G PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIP-AILDGRDCMGCAKTGSGKTAAFVLP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
VL++L E+ ++ L+L PTR
Sbjct: 60 ----------------------------VLQKLSEDPYG-----------VFCLVLTPTR 80
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA Q+ GK +K +VGGM Q L+K PH++VATPGRL + I+
Sbjct: 81 ELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPHVVVATPGRLADHIRSS-- 138
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
L +I +L++DE DR++E G K++
Sbjct: 139 DTINLNRIQFLIMDEADRLLEQGCTDFTKDL----------------------------- 169
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLK 415
V ++ RQT +FSATLT +L+
Sbjct: 170 -EVILSAVPAKRQTLLFSATLTDTLQ 194
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y L+L PTRELA Q+ GK +K +VGGM Q L+K PH++VATP
Sbjct: 69 YGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPHVVVATP 128
Query: 1412 GAL-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRE 1466
G L S I+L + I++L + D LE+ D D E ++ R+
Sbjct: 129 GRLADHIRSSDTINLNR-IQFL----IMDEADRLLEQGCTDF--TKDLEVILSAVPAKRQ 181
Query: 1467 NALMSKALVSKRKELQSL 1484
L S L ++LQS+
Sbjct: 182 TLLFSATLTDTLQQLQSI 199
>gi|403347814|gb|EJY73340.1| hypothetical protein OXYTRI_05530 [Oxytricha trifallax]
Length = 508
Score = 202 bits (515), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 230/467 (49%), Gaps = 76/467 (16%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
E+ E D E + + K + + AL G+K PTKIQ+ + L KDI+
Sbjct: 42 EIKEEDIVEEEKTIMSSTTFEKLGVCSELQEALKNMGYKCPTKIQAESLQYTLKG-KDII 100
Query: 811 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870
G AETGSGKT AF IP++ + L+NP
Sbjct: 101 GLAETGSGKTAAFAIPVIQQL---LDNP-------------------------------- 125
Query: 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
+A +++PTREL +Q+ G ++ A +VGG+ Q L+K PH++
Sbjct: 126 ----QPFFACVMSPTRELCVQIAEQFEAIGAGIGLRTAVLVGGLDMVSQAIALSKNPHVV 181
Query: 931 VATPGRLWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
+ TPGR+ + + FHL K+ +L+ DE DR++ S F + N++ +T+ +
Sbjct: 182 IGTPGRMADHLANTKGFHLK---KLKFLIFDEADRLL-SMDFEKQINLI----LTQIPKS 233
Query: 990 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 1049
R T++FSAT+T SK +K+ + ++ P ++++ K
Sbjct: 234 RNTYLFSATMT-------------SKVQKLQRA-----------SLNDPVKIEVSSKYKT 269
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
TL ++ I K++YL Y + Q G + ++F + + +L +L L + ++
Sbjct: 270 VDTLVQNYIFIPEKHKETYLVYLLTQFAGQKMIIFTTTCNQSMKLALILRNLNFKAVNIN 329
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
+ Q QRL L++F+ +IL+ATDVA+RGLDIP ++ VI++ +P+ S+ Y+HR GRT
Sbjct: 330 GQLTQTQRLSALNKFKANERNILIATDVASRGLDIPEVDFVINFDIPQHSKDYVHRVGRT 389
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1215
ARA G + + ++ + K+ ++KK+D ++P +S +LI
Sbjct: 390 ARAGKTGKAITFVTQYDVETFQKIEQLIDKKLD--EYPGLDSKAALI 434
Score = 157 bits (398), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 134/516 (25%), Positives = 215/516 (41%), Gaps = 156/516 (30%)
Query: 134 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
E+ E D E + + K + + AL G+K PTKIQ+ + L KDI+
Sbjct: 42 EIKEEDIVEEEKTIMSSTTFEKLGVCSELQEALKNMGYKCPTKIQAESLQYTLKG-KDII 100
Query: 194 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 253
G AETGSGKT AF IP++ + L+NP
Sbjct: 101 GLAETGSGKTAAFAIPVIQQL---LDNP-------------------------------- 125
Query: 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
+A +++PTREL +Q+ G ++ A +VGG+ Q L+K PH++
Sbjct: 126 ----QPFFACVMSPTRELCVQIAEQFEAIGAGIGLRTAVLVGGLDMVSQAIALSKNPHVV 181
Query: 314 VATPGRLWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
+ TPGR+ + + FHL K+ +L+ DE DR++ S F + N++
Sbjct: 182 IGTPGRMADHLANTKGFHLK---KLKFLIFDEADRLL-SMDFEKQINLI----------- 226
Query: 373 RQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK 432
+T+ + R T++FSAT+T SK +K+ +
Sbjct: 227 ---------------------LTQIPKSRNTYLFSATMT-------------SKVQKLQR 252
Query: 433 GDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
++ P ++++ K TL ++ I K++YL Y + Q G+ +
Sbjct: 253 A-----------SLNDPVKIEVSSKYKTVDTLVQNYIFIPEKHKETYLVYLLTQFAGQKM 301
Query: 493 CEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 552
I T T +S L IL R L F
Sbjct: 302 ---------------------IIFTTTCNQSMKLA-----------LIL----RNLNF-K 324
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
+++ +LTQ QRL L++F+ +IL+ATDVA+RGLDIP
Sbjct: 325 AVNINGQLTQ------------------TQRLSALNKFKANERNILIATDVASRGLDIPE 366
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
++ VI++ +P+ S+ Y+HR GRTARA G + +
Sbjct: 367 VDFVINFDIPQHSKDYVHRVGRTARAGKTGKAITFV 402
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
+ A +++PTREL +Q+ G ++ A +VGG+ Q L+K PH+++ TPG
Sbjct: 128 FFACVMSPTRELCVQIAEQFEAIGAGIGLRTAVLVGGLDMVSQAIALSKNPHVVIGTPGR 187
Query: 1414 LS 1415
++
Sbjct: 188 MA 189
>gi|421488009|ref|ZP_15935407.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
gi|400369971|gb|EJP22968.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
Length = 525
Score = 202 bits (515), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 213/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSTELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSTELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P ++VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
Length = 528
Score = 202 bits (515), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 216/432 (50%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + N+ + I+ A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
NK+ TE+ N + ALI+APTREL
Sbjct: 61 ----NKIH--TED---------------------------------NTIQALIIAPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+Q Q + G+ VKV V GG S EKQ++ L H++V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRLLDLIKRKALKL 141
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
I L++DE D M+ G +++ I+ RV + RQT +FSAT+
Sbjct: 142 NH---IETLILDEADEMLNMGFLEDIEAIISRV-----PEARQTLLFSATMP-------- 185
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
DP IKR+ + +K+P+ V + + + + K +EK D+
Sbjct: 186 --------------DP-IKRI-GVKFMKNPEHVKIKATELTNVNVDQYYVRVKENEKFDT 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++ +
Sbjct: 230 MTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDH 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 290 IDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG 349
Query: 1188 LYIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 -YLTIIENLTKK 360
Score = 124 bits (312), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 118/233 (50%), Gaps = 48/233 (20%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + N+ + I+ A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 2 KFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
NK+ TE+ N + ALI+APTREL
Sbjct: 61 ----NKIH--TED---------------------------------NTIQALIIAPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+Q Q + G+ VKV V GG S EKQ++ L H++V TPGRL + I+ L
Sbjct: 82 AVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRLLDLIKRKALKL 141
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 142 NH---IETLILDEADEMLNMGFLEDIEAIISRV-----PEARQTLLFSATMPD 186
Score = 90.9 bits (224), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+ K +EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 VRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ + IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRVIRDFKNDHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVSPNEM 348
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L H++V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHIETLI-LDEADEML-----NMGFLEDIEAIISRVPEARQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|384887274|ref|YP_005761785.1| DEAD/DEAH box helicase [Helicobacter pylori 52]
gi|261839104|gb|ACX98869.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 52]
Length = 492
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 205/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 TSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
LMD-9]
Length = 527
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEKRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGSRAEGIHGDLDQNKRLRIIRDFKNGQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLGIIENLTKK 360
Score = 123 bits (308), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEKRQTLLFSATMPD 186
Score = 91.3 bits (225), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGSRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRIIRDFKNGQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVSPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|420444889|ref|ZP_14943803.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-42]
gi|393063083|gb|EJB63930.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-42]
Length = 491
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 205/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 118 bits (295), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420495583|ref|ZP_14994147.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-23]
gi|393111894|gb|EJC12415.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-23]
Length = 492
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 205/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ ++L + P
Sbjct: 377 DSGIELFEIP 386
Score = 117 bits (292), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLI 648
+ L+
Sbjct: 358 ITLV 361
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|340728741|ref|XP_003402675.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Bombus
terrestris]
Length = 452
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 147/460 (31%), Positives = 224/460 (48%), Gaps = 78/460 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ +++ G K PT IQ +P +LA D +G A+TGSGKTLAF +PIL
Sbjct: 3 FAALNLSSWLVQQCNFMGLKCPTPIQKNCIPK-ILAGDDCIGCAKTGSGKTLAFALPIL- 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++L E+ ++ALIL PTRELA
Sbjct: 61 ---------------------------QKLSEDPYG-----------IFALILTPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ + GK +K +VGGM Q L+K PHI+VATPGRL + L +
Sbjct: 83 FQIADQFSAIGKSIGLKKCVIVGGMDMVVQGLELSKHPHIVVATPGRLAD--HLESCNTF 140
Query: 950 ELYKINYLVIDETDRMIESGHFP-ELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L +I +LV+DE DR++E GHF +LK I + + + +Q +FSAT+T +L
Sbjct: 141 SLKQIKFLVLDEADRLLE-GHFDDQLKTIFEAL-----PKRKQMLLFSATMTDTL----- 189
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
K K ++ I +D + K L + ILC D +DS+
Sbjct: 190 -----DKVKHIASSKAFIWESKD------------ESGVATVKELDQRYILCPSDVRDSF 232
Query: 1069 LYYFILQH-----PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
L I G ++F ++ + L+ L + + LHA + Q+ RL L +F
Sbjct: 233 LVEAIRTFRGSNKDGSIMIFTDTCKHCQVLSMTLNDVGFKNVALHAMIKQKDRLAALTQF 292
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ + IL+ATDVAARGLDIP +E VI++ +P ++ YIHR GRTARA G+ + LI
Sbjct: 293 KSNHAKILIATDVAARGLDIPTVELVINHIIPNVTKEYIHRVGRTARAGKNGMAITLITP 352
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
+I L + N++ K L ++ +++ + I +I +AK
Sbjct: 353 HDIKLLHAIENAIGTK--LTEYKVNDKEIVTILTQISVAK 390
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 144/503 (28%), Positives = 212/503 (42%), Gaps = 148/503 (29%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ +++ G K PT IQ +P +LA D +G A+TGSGKTLAF +PIL
Sbjct: 3 FAALNLSSWLVQQCNFMGLKCPTPIQKNCIPK-ILAGDDCIGCAKTGSGKTLAFALPIL- 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++L E+ ++ALIL PTRELA
Sbjct: 61 ---------------------------QKLSEDPYG-----------IFALILTPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ + GK +K +VGGM Q L+K PHI+VATPGRL + L +
Sbjct: 83 FQIADQFSAIGKSIGLKKCVIVGGMDMVVQGLELSKHPHIVVATPGRLAD--HLESCNTF 140
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L +I +LV+DE DR++E GHF + +LK I + +
Sbjct: 141 SLKQIKFLVLDEADRLLE-GHFDD---------------------------QLKTIFEAL 172
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
+ +Q +FSAT+T +L K K ++ I +D
Sbjct: 173 -----PKRKQMLLFSATMTDTL----------DKVKHIASSKAFIWESKD---------- 207
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
+ K L + ILC D +DS+L I RT
Sbjct: 208 --ESGVATVKELDQRYILCPSDVRDSFLVEAI-----RTF-------------------- 240
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
+ KD G ++F ++ + L+ L + +
Sbjct: 241 ---------------RGSNKD-----------GSIMIFTDTCKHCQVLSMTLNDVGFKNV 274
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
LHA + Q+ RL L +F+ + IL+ATDVAARGLDIP +E VI++ +P ++ YIHR
Sbjct: 275 ALHAMIKQKDRLAALTQFKSNHAKILIATDVAARGLDIPTVELVINHIIPNVTKEYIHRV 334
Query: 633 GRTARANNEGLTVVLIESDEIPL 655
GRTARA G+ + LI +I L
Sbjct: 335 GRTARAGKNGMAITLITPHDIKL 357
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 38/64 (59%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y ALIL PTRELA Q+ + GK +K +VGGM Q L+K PHI+VATP
Sbjct: 68 YGIFALILTPTRELAFQIADQFSAIGKSIGLKKCVIVGGMDMVVQGLELSKHPHIVVATP 127
Query: 1412 GALS 1415
G L+
Sbjct: 128 GRLA 131
>gi|417915918|ref|ZP_12559512.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis bv. 2
str. SK95]
gi|342831712|gb|EGU66023.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis bv. 2
str. SK95]
Length = 525
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 213/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+L+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 116 bits (291), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 124/262 (47%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|350415766|ref|XP_003490744.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Bombus
impatiens]
Length = 452
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 145/460 (31%), Positives = 226/460 (49%), Gaps = 78/460 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ +++ G K PT IQ +P +LA D +G A+TGSGKTLAF +PIL
Sbjct: 3 FAALNLSSWLVQQCNFMGLKCPTPIQKNCIPK-ILAGDDCIGCAKTGSGKTLAFALPIL- 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++L E+ ++AL+L PTRELA
Sbjct: 61 ---------------------------QKLSEDPYG-----------IFALVLTPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ + GK +K +VGGM Q L+K PHI+VATPGRL + L +
Sbjct: 83 FQIADQFSAIGKSIGLKKCVIVGGMDMVVQGLELSKHPHIVVATPGRLAD--HLESCNTF 140
Query: 950 ELYKINYLVIDETDRMIESGHFP-ELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
L +I +LV+DE DR++E GHF +LK I + + + +Q +FSAT+T +L
Sbjct: 141 SLKQIKFLVLDEADRLLE-GHFDDQLKTIFEAL-----PKRKQMLLFSATMTDTL----- 189
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
K K ++ I +D + + K L + +LC D +DS+
Sbjct: 190 -----DKVKHIASSKAFIWESKDEFGVAT------------VKELDQRYVLCPSDVRDSF 232
Query: 1069 LYYFILQH-----PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
L I G ++F ++ + L+ L + + + LHA + Q+ RL L +F
Sbjct: 233 LVEAIRTFRASNKDGSIMIFTDTCKHCQVLSMTLNDVGFNNVALHAMIKQKDRLAALTQF 292
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ + IL+ATDVAARGLDIP +E VI++ +P ++ YIHR GRTARA G+ + LI
Sbjct: 293 KSNHAKILIATDVAARGLDIPTVELVINHIIPNVTKEYIHRVGRTARAGKNGMAITLITP 352
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
+I L + N++ K L ++ +++ + I +I +AK
Sbjct: 353 HDIKLLHAIENAIGTK--LTEYKVNDKEIVTILTQISVAK 390
Score = 174 bits (441), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 142/503 (28%), Positives = 214/503 (42%), Gaps = 148/503 (29%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ +++ G K PT IQ +P +LA D +G A+TGSGKTLAF +PIL
Sbjct: 3 FAALNLSSWLVQQCNFMGLKCPTPIQKNCIPK-ILAGDDCIGCAKTGSGKTLAFALPIL- 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++L E+ ++AL+L PTRELA
Sbjct: 61 ---------------------------QKLSEDPYG-----------IFALVLTPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ + GK +K +VGGM Q L+K PHI+VATPGRL + L +
Sbjct: 83 FQIADQFSAIGKSIGLKKCVIVGGMDMVVQGLELSKHPHIVVATPGRLAD--HLESCNTF 140
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L +I +LV+DE DR++E GHF + +LK I + +
Sbjct: 141 SLKQIKFLVLDEADRLLE-GHFDD---------------------------QLKTIFEAL 172
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
+ +Q +FSAT+T +L K K ++ I +D + +
Sbjct: 173 -----PKRKQMLLFSATMTDTL----------DKVKHIASSKAFIWESKDEFGVAT---- 213
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
K L + +LC D +DS+L I RT
Sbjct: 214 --------VKELDQRYVLCPSDVRDSFLVEAI-----RTF-------------------- 240
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
+ KD G ++F ++ + L+ L + + +
Sbjct: 241 ---------------RASNKD-----------GSIMIFTDTCKHCQVLSMTLNDVGFNNV 274
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
LHA + Q+ RL L +F+ + IL+ATDVAARGLDIP +E VI++ +P ++ YIHR
Sbjct: 275 ALHAMIKQKDRLAALTQFKSNHAKILIATDVAARGLDIPTVELVINHIIPNVTKEYIHRV 334
Query: 633 GRTARANNEGLTVVLIESDEIPL 655
GRTARA G+ + LI +I L
Sbjct: 335 GRTARAGKNGMAITLITPHDIKL 357
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y AL+L PTRELA Q+ + GK +K +VGGM Q L+K PHI+VATP
Sbjct: 68 YGIFALVLTPTRELAFQIADQFSAIGKSIGLKKCVIVGGMDMVVQGLELSKHPHIVVATP 127
Query: 1412 GALS 1415
G L+
Sbjct: 128 GRLA 131
>gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD, partial [Streptococcus vestibularis
ATCC 49124]
gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
49124]
Length = 528
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLSIIENLTKK 360
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPD 186
Score = 91.3 bits (225), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRVIRDFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|255691171|ref|ZP_05414846.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
gi|260623074|gb|EEX45945.1| DEAD/DEAH box helicase [Bacteroides finegoldii DSM 17565]
Length = 374
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 139/436 (31%), Positives = 212/436 (48%), Gaps = 68/436 (15%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
NI E I++A+ +KG+ PT IQ +P+AL A++DI+G A+TG+GKT +F IPI +
Sbjct: 6 LNIIEPILKAIEEKGYIAPTSIQEKAIPAAL-AKRDILGCAQTGTGKTASFAIPI----I 60
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
L+ E D+ R + ALIL PTRELA+Q+
Sbjct: 61 QHLQANKETDK------------------------------RQGIKALILTPTRELAMQI 90
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
I D KYT V+ + GG++ Q+ +L K ILVATPGRL + I GH HLT
Sbjct: 91 SECIDDYSKYTRVRHGVIFGGVNQRPQVDMLRKGIDILVATPGRLLDLINQGHIHLTN-- 148
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
I Y V+DE DRM++ G ++K IL ++ + +QT FSAT+ S+
Sbjct: 149 -IEYFVLDEADRMLDMGFIHDIKRILPKL-----PKEKQTLFFSATMPDSI--------- 193
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
I + LL K+P + +T K ++ + + EK L
Sbjct: 194 -------------IALTKSLL--KNPVKIYITPKSSTVDSIKQIIYFVEKKEKSQLLISI 238
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + R+ L+F + + ++ ++L +H + +Q R L F+ ++
Sbjct: 239 LQKAEDRSVLIFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTKVM 298
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ATD+A+RG+DI + VI+Y +P E Y+HR GRT RA NEG L +E L
Sbjct: 299 VATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTALTFCSQEERKLVND 358
Query: 1192 MFNSLEKKVDLPDFPI 1207
+ KK++ DF I
Sbjct: 359 IQKLTGKKLNKADFAI 374
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 122/229 (53%), Gaps = 43/229 (18%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
NI E I++A+ +KG+ PT IQ +P+AL A++DI+G A+TG+GKT +F IPI +
Sbjct: 6 LNIIEPILKAIEEKGYIAPTSIQEKAIPAAL-AKRDILGCAQTGTGKTASFAIPI----I 60
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
L+ E D+ R + ALIL PTRELA+Q+
Sbjct: 61 QHLQANKETDK------------------------------RQGIKALILTPTRELAMQI 90
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
I D KYT V+ + GG++ Q+ +L K ILVATPGRL + I GH HLT
Sbjct: 91 SECIDDYSKYTRVRHGVIFGGVNQRPQVDMLRKGIDILVATPGRLLDLINQGHIHLTN-- 148
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I Y V+DE DRM++ G ++K IL ++ + +QT+ S P+
Sbjct: 149 -IEYFVLDEADRMLDMGFIHDIKRILPKL-----PKEKQTLFFSATMPD 191
Score = 73.6 bits (179), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRL 560
+K+P + +T K ++ + + EK L + + R+ L+F + + ++
Sbjct: 201 LKNPVKIYITPKSSTVDSIKQIIYFVEKKEKSQLLISILQKAEDRSVLIFSRTKHNADKI 260
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
++L +H + +Q R L F+ +++ATD+A+RG+DI + VI+Y
Sbjct: 261 VRILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTKVMVATDIASRGIDINELPLVINYD 320
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+P E Y+HR GRT RA NEG + +E
Sbjct: 321 LPDVPETYVHRIGRTGRAGNEGTALTFCSQEE 352
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R ALIL PTRELA+Q+ I D KYT V+ + GG++ Q+ +L K ILVAT
Sbjct: 72 RQGIKALILTPTRELAMQISECIDDYSKYTRVRHGVIFGGVNQRPQVDMLRKGIDILVAT 131
Query: 1411 PGAL 1414
PG L
Sbjct: 132 PGRL 135
>gi|409045997|gb|EKM55477.1| hypothetical protein PHACADRAFT_184272 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 141/456 (30%), Positives = 225/456 (49%), Gaps = 74/456 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+ ++ AL Q F +PT IQ+ +P AL R DI+G A TGSGKT AF +PIL + +
Sbjct: 30 DPLLEALQQLSFTSPTDIQTAALPHALEGR-DIIGVASTGSGKTAAFALPILQKL---WD 85
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
+P L+A ++APTRELA Q+ H
Sbjct: 86 DP------------------------------------RGLFACVIAPTRELAYQITEHF 109
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL-----TEL 951
G V+ A VVGG+ Q L K PH++VATPGRL +HL L
Sbjct: 110 EALGSAMGVRCATVVGGIDEMSQAVALAKKPHVVVATPGRL-------QYHLENTKGFSL 162
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+ +LV+DE DR+++ P L IL + Q R T++FSAT+T +
Sbjct: 163 RSLKFLVLDEADRLLDMDFGPILDKILKVI-----PQERTTYLFSATMTTKV-------- 209
Query: 1012 GQSKSKKVSKGDPS----IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
+K ++ S +P ++ LL I+ + ++ + TL + + +KD
Sbjct: 210 --AKLQRASLSNPVRVEVSEKYAPLLLIRLLMRLRVSRRYSTVSTLLQYYLFIPLVQKDV 267
Query: 1068 YLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
L Y +++ F ++ +RL ++ L +PLH ++Q RL L +F+
Sbjct: 268 NLMYLANSLASNSIIIFTRTVHDCQRLAIMMRTLGFPAVPLHGQLSQSARLGALGKFKSG 327
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+L+ATDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G ++ + ++
Sbjct: 328 GRKVLVATDVASRGLDIPHVDAVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDV 387
Query: 1187 PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLA 1222
L ++ + KK++L +P D+ ++L+++R+D A
Sbjct: 388 ELVQRIESVTGKKLEL--WPTDKEEIALLRERVDEA 421
Score = 107 bits (267), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 100/216 (46%), Gaps = 52/216 (24%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+ ++ AL Q F +PT IQ+ +P AL R DI+G A TGSGKT AF +PIL + +
Sbjct: 30 DPLLEALQQLSFTSPTDIQTAALPHALEGR-DIIGVASTGSGKTAAFALPILQKL---WD 85
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
+P L+A ++APTRELA Q+ H
Sbjct: 86 DP------------------------------------RGLFACVIAPTRELAYQITEHF 109
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL-----TEL 334
G V+ A VVGG+ Q L K PH++VATPGRL +HL L
Sbjct: 110 EALGSAMGVRCATVVGGIDEMSQAVALAKKPHVVVATPGRL-------QYHLENTKGFSL 162
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
+ +LV+DE DR+++ P L IL + T+
Sbjct: 163 RSLKFLVLDEADRLLDMDFGPILDKILKVIPQERTT 198
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 66/108 (61%)
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++F ++ +RL ++ L +PLH ++Q RL L +F+ +L+ATDVA+RG
Sbjct: 282 IIFTRTVHDCQRLAIMMRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKVLVATDVASRG 341
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDIP ++ VI+Y +P S+ YIHR GRTARA G ++ + ++ L
Sbjct: 342 LDIPHVDAVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVEL 389
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 1354 WD------ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 1407
WD A ++APTRELA Q+ H G V+ A VVGG+ Q L K PH++
Sbjct: 84 WDDPRGLFACVIAPTRELAYQITEHFEALGSAMGVRCATVVGGIDEMSQAVALAKKPHVV 143
Query: 1408 VATPGAL 1414
VATPG L
Sbjct: 144 VATPGRL 150
Score = 40.4 bits (93), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L ++ + KK++L +P D+ ++L+++R+
Sbjct: 361 DYIHRVGRTARAGRSGKSITFVTQYDVELVQRIESVTGKKLEL--WPTDKEEIALLRERV 418
Query: 1299 DLA 1301
D A
Sbjct: 419 DEA 421
>gi|406588887|ref|ZP_11063373.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|419814746|ref|ZP_14339501.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
gi|419817514|ref|ZP_14341672.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404465849|gb|EKA11235.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404466056|gb|EKA11416.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|404471161|gb|EKA15716.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
Length = 525
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIETLTKK 360
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|385229561|ref|YP_005789477.1| ATP-dependent RNA helicase [Helicobacter pylori Puno135]
gi|344335999|gb|AEN17960.1| ATP-dependent RNA helicase [Helicobacter pylori Puno135]
Length = 492
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 205/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+ K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHARTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 115 bits (289), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 117/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+ K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHARTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+ K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHARTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
DEAD-box family [Streptococcus mitis B6]
gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
DEAD-box family [Streptococcus mitis B6]
Length = 521
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ K N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNKLNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IGTLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 117 bits (292), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ K N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNKLNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IGTLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.4 bits (241), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
salivarius SK126]
gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
salivarius SK126]
Length = 528
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLGIIENLTKK 360
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPD 186
Score = 91.3 bits (225), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRVIRDFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|410594336|ref|YP_006951063.1| ATP-dependent RNA helicase exp9 [Streptococcus agalactiae SA20-06]
gi|410517975|gb|AFV72119.1| ATP-dependent RNA helicase exp9 [Streptococcus agalactiae SA20-06]
Length = 516
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 214/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ + I+ A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL- 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
NK+ ED N + ALI+APTRELA
Sbjct: 61 ---NKIHT---ED--------------------------------NTIQALIIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L H++V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +K
Sbjct: 143 H---IETLILDEADEMLNMGFLEDIEAIISRV-----PEARQTLLFSATMPDPIKRI--- 191
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
+K ++D ++K + TE + + + + K +EK D+
Sbjct: 192 ---------------GVKFMKDPEHVK----IKATELTNVN--VDQYYVRVKENEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++ +
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLTIIENLTKK 360
Score = 124 bits (311), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 116/232 (50%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ + I+ A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL- 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
NK+ ED N + ALI+APTRELA
Sbjct: 61 ---NKIHT---ED--------------------------------NTIQALIIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L H++V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 H---IETLILDEADEMLNMGFLEDIEAIISRV-----PEARQTLLFSATMPD 186
Score = 90.9 bits (224), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+ K +EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 VRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ + IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRVIRDFKNDHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVSPNEM 348
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L H++V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHIETLI-LDEADEML-----NMGFLEDIEAIISRVPEARQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|406577293|ref|ZP_11052907.1| ATP-dependent RNA helicase [Streptococcus sp. GMD6S]
gi|404460138|gb|EKA06419.1| ATP-dependent RNA helicase [Streptococcus sp. GMD6S]
Length = 525
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLK 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRTEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 116 bits (291), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLK 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRTEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|384156092|ref|YP_005538907.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
gi|345469646|dbj|BAK71097.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
Length = 435
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 136/437 (31%), Positives = 221/437 (50%), Gaps = 71/437 (16%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
I+RA+ ++G+ TPT IQS +P +L++KD++ AA+TG+GKT F +P+L +
Sbjct: 12 ILRAIKEEGYTTPTPIQSKSIP-VILSKKDVLAAAQTGTGKTAGFTLPLLQRL------- 63
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
DS L+++ +V ALIL PTRELA QV +
Sbjct: 64 -----KDSNLKDKKTQV----------------------RALILTPTRELAAQVAQSVET 96
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958
GKY P K A + GG+ Q +L K I++ATPGRL + I +L KI +LV
Sbjct: 97 YGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIATPGRLLDLISQDSL---DLSKIEFLV 153
Query: 959 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
+DE DRM++ G ++K IL + + RQ +FSAT ++
Sbjct: 154 LDEADRMLDMGFINDIKKILAIL-----PKQRQNLLFSATFSN----------------- 191
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
IK+L D L +KSP +V++++ + + + D K L + + ++
Sbjct: 192 ------EIKKLADGL-LKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNKNSW 244
Query: 1079 -RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
+ LVF + +L++ L K + +H + +Q R K LD F++ +L+ATD+A
Sbjct: 245 QQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIA 304
Query: 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI---KMFN 1194
ARG+DI + HV+++ +P +E Y+HR GRT RA N G+ + L+ DE K+
Sbjct: 305 ARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRARNNGIAISLVCVDEHEYLFGIEKLIK 364
Query: 1195 SLEKKVDLPDFPIDESV 1211
KKV++ F ++ ++
Sbjct: 365 QKIKKVEINGFKVNPNI 381
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 44/230 (19%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
I+RA+ ++G+ TPT IQS +P +L++KD++ AA+TG+GKT F +P+L +
Sbjct: 12 ILRAIKEEGYTTPTPIQSKSIP-VILSKKDVLAAAQTGTGKTAGFTLPLLQRL------- 63
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
DS L+++ +V ALIL PTRELA QV +
Sbjct: 64 -----KDSNLKDKKTQV----------------------RALILTPTRELAAQVAQSVET 96
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341
GKY P K A + GG+ Q +L K I++ATPGRL + I +L KI +LV
Sbjct: 97 YGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIATPGRLLDLISQDSL---DLSKIEFLV 153
Query: 342 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNILD 390
+DE DRM++ G ++K IL + + RQ ++ S F E+K + D
Sbjct: 154 LDEADRMLDMGFINDIKKILAIL-----PKQRQNLLFSATFSNEIKKLAD 198
Score = 91.7 bits (226), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-T 547
T EI+ L + +KSP +V++++ + + + D K L + + ++ +
Sbjct: 188 TFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNKNSWQQV 247
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + +L++ L K + +H + +Q R K LD F++ +L+ATD+AARG
Sbjct: 248 LVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIAARG 307
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+DI + HV+++ +P +E Y+HR GRT RA N G+ + L+ DE
Sbjct: 308 IDIEQLPHVVNFELPNVAEDYVHRIGRTGRARNNGIAISLVCVDE 352
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 70/139 (50%), Gaps = 18/139 (12%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
ALIL PTRELA QV + GKY P K A + GG+ Q +L K I++ATPG L
Sbjct: 77 ALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIATPGRLL 136
Query: 1415 ---SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAK--DMDIIIDDENLIQPKANSRENAL 1469
S +DL+K IE+L L++A + DM I D + ++ R+N L
Sbjct: 137 DLISQDSLDLSK-IEFL-----------VLDEADRMLDMGFINDIKKILAILPKQRQNLL 184
Query: 1470 MSKALVSKRKELQSLLGKS 1488
S ++ K+L L KS
Sbjct: 185 FSATFSNEIKKLADGLLKS 203
>gi|414158100|ref|ZP_11414394.1| hypothetical protein HMPREF9188_00668 [Streptococcus sp. F0441]
gi|410870645|gb|EKS18602.1| hypothetical protein HMPREF9188_00668 [Streptococcus sp. F0441]
Length = 525
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 213/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLE 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I ++E T + AL++APTRELA
Sbjct: 62 KI--RIEEAT-------------------------------------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+L+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 125/262 (47%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLE 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I ++E T + AL++APTRELA
Sbjct: 62 KI--RIEEAT-------------------------------------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|385259821|ref|ZP_10037981.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
gi|385193235|gb|EIF40614.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
Length = 525
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPEA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 124/262 (47%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S PE + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPE---AIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|418975118|ref|ZP_13523027.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
gi|383348489|gb|EID26448.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
Length = 515
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 97.4 bits (241), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
infantis SK1302]
gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
infantis SK1302]
Length = 525
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 117 bits (292), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 124/262 (47%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ + P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|420426456|ref|ZP_14925510.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-9]
gi|393044095|gb|EJB45090.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-9]
Length = 492
Score = 202 bits (513), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 205/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+ K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHNRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 115 bits (289), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 117/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+ K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHNRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+ K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHNRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|419782961|ref|ZP_14308757.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
gi|383182695|gb|EIC75245.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
Length = 520
Score = 202 bits (513), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 97.4 bits (241), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|419778066|ref|ZP_14303968.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
gi|383187819|gb|EIC80263.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
Length = 525
Score = 202 bits (513), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|145352866|ref|XP_001420755.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580990|gb|ABO99048.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 466
Score = 202 bits (513), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 221/440 (50%), Gaps = 74/440 (16%)
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G++ PT IQ +P AL R D++G A+TGSGKT AF +PIL +++ +
Sbjct: 37 GWRAPTPIQCAAVPEALRER-DVIGLAQTGSGKTGAFALPILQSLLDAPQG--------- 86
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
++LIL+PTRELA+Q+ I G +
Sbjct: 87 ------------------------------FHSLILSPTRELAMQIAEQIETLGAGVGAR 116
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966
A +VGG+ Q L K PH++V TPGR+ + ++ + L + LV+DE DR++
Sbjct: 117 TATLVGGVDMTTQAIKLGKRPHVIVGTPGRVVDHLE--NTKGFSLRALKVLVLDEADRLL 174
Query: 967 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026
E+ IL RV ++ R+T +FSAT+T+ KV+K
Sbjct: 175 NLDFEEEIDKIL-RVIPSD----RRTQLFSATMTN----------------KVAK----- 208
Query: 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCN 1085
LQ ++ P V+++ K ++L + + KD Y Y + TL VF
Sbjct: 209 --LQRAC-LRDPVKVEVSAKYSTVESLKQHYLFIPAKHKDCYATYLFNELSASTLIVFAR 265
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
+ + ++L + L +P+H M+Q +R+ L +F+ +IL+ATDVA+RGLDIP
Sbjct: 266 TCDATRKLALIARNLGFGAVPIHGQMSQPKRIAALQKFKSGERNILIATDVASRGLDIPS 325
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
++ VI+Y VP+ S+ Y+HR GRTARA GL + ++ ++ LY K+ + KK+D +
Sbjct: 326 VDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELYQKIERLINKKLD--KY 383
Query: 1206 PIDESVLSLIKKRIDLAKSI 1225
P++E + L+ R++ A+ I
Sbjct: 384 PLEEEAVMLLYDRVNEAQRI 403
Score = 154 bits (388), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 130/490 (26%), Positives = 201/490 (41%), Gaps = 154/490 (31%)
Query: 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229
G++ PT IQ +P AL R D++G A+TGSGKT AF +PIL +++ +
Sbjct: 37 GWRAPTPIQCAAVPEALRER-DVIGLAQTGSGKTGAFALPILQSLLDAPQG--------- 86
Query: 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 289
++LIL+PTRELA+Q+ I G +
Sbjct: 87 ------------------------------FHSLILSPTRELAMQIAEQIETLGAGVGAR 116
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349
A +VGG+ Q L K PH++V TPGR+ + ++ + L + LV+DE DR++
Sbjct: 117 TATLVGGVDMTTQAIKLGKRPHVIVGTPGRVVDHLE--NTKGFSLRALKVLVLDEADRLL 174
Query: 350 ESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
E+ IL RV ++ R+T +FSAT
Sbjct: 175 NLDFEEEIDKIL-RVIPSD--------------------------------RRTQLFSAT 201
Query: 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469
+T+ KV+K LQ ++ P V+++ K ++L + +
Sbjct: 202 MTN----------------KVAK-------LQRAC-LRDPVKVEVSAKYSTVESLKQHYL 237
Query: 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH 529
KD Y Y + TL I + D T K+ +
Sbjct: 238 FIPAKHKDCYATYLFNELSASTL---------IVFARTCDATRKLALI------------ 276
Query: 530 DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 589
R L F +P+H M+Q +R+ L +
Sbjct: 277 ---------------ARNLGF-------------------GAVPIHGQMSQPKRIAALQK 302
Query: 590 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIE 649
F+ +IL+ATDVA+RGLDIP ++ VI+Y VP+ S+ Y+HR GRTARA GL V ++
Sbjct: 303 FKSGERNILIATDVASRGLDIPSVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVT 362
Query: 650 SDEIPLKTKF 659
++ L K
Sbjct: 363 QYDVELYQKI 372
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+ +LIL+PTRELA+Q+ I G + A +VGG+ Q L K PH++V TPG
Sbjct: 86 GFHSLILSPTRELAMQIAEQIETLGAGVGARTATLVGGVDMTTQAIKLGKRPHVIVGTPG 145
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA GL + ++ ++ LY K+ + KK+D +P++E + L+ R+
Sbjct: 340 DYVHRVGRTARAGRSGLAVTMVTQYDVELYQKIERLINKKLD--KYPLEEEAVMLLYDRV 397
Query: 1299 DLAKSIEYLESKIKKNRPDNWLEKAAKDMD 1328
+ A+ I + + + R ++ KD D
Sbjct: 398 NEAQRIAIQQMRDQDERKGKGAKRGFKDDD 427
>gi|421452972|ref|ZP_15902328.1| ATP-dependent RNA helicase [Streptococcus salivarius K12]
gi|400181281|gb|EJO15548.1| ATP-dependent RNA helicase [Streptococcus salivarius K12]
Length = 525
Score = 202 bits (513), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLGIIENLTKK 360
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPD 186
Score = 91.3 bits (225), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRVIRDFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|420421649|ref|ZP_14920727.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4110]
gi|393038167|gb|EJB39201.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4110]
Length = 492
Score = 202 bits (513), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 215/450 (47%), Gaps = 73/450 (16%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
T ++D + +++ + + E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG
Sbjct: 10 TEIDDDAYHKLS-FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTG 67
Query: 817 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
+GKT AF +PI +N L+N +
Sbjct: 68 TGKTAAFALPI----INNLKN------------------------------------NHT 87
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
+ AL++ PTRELA+Q+ + I GK+ K CV GG S +KQ + K P +++ATPGR
Sbjct: 88 IEALVITPTRELAMQISDEIFKLGKHNRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGR 147
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ H + +V+DE+D M++ G +++ I D + Q +FS
Sbjct: 148 LLDHLKNERIHK---FVPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFS 199
Query: 997 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
AT+ IKRL D + KI I T
Sbjct: 200 ATMPEP-----------------------IKRLADKILENPIKIHIAPSNITNTDITQRF 236
Query: 1057 KILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 237 YVINEHERSEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDR 296
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 297 RSSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGM 356
Query: 1177 TLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206
+ L+ E ++M ++ +++L + P
Sbjct: 357 AITLVTPLEYKELLRMQKEIDSEIELFEIP 386
Score = 115 bits (289), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 51/254 (20%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
T ++D + +++ + + E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG
Sbjct: 10 TEIDDDAYHKLS-FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTG 67
Query: 200 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
+GKT AF +PI +N L+N +
Sbjct: 68 TGKTAAFALPI----INNLKN------------------------------------NHT 87
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
+ AL++ PTRELA+Q+ + I GK+ K CV GG S +KQ + K P +++ATPGR
Sbjct: 88 IEALVITPTRELAMQISDEIFKLGKHNRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGR 147
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ H + +V+DE+D M++ G +++ I D + Q ++ S
Sbjct: 148 LLDHLKNERIH---KFVPKVVVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFS 199
Query: 380 GHFPE-LKNILDRV 392
PE +K + D++
Sbjct: 200 ATMPEPIKRLADKI 213
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERSEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+ K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHNRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|417933911|ref|ZP_12577231.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. F0392]
gi|340770481|gb|EGR92996.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. F0392]
Length = 525
Score = 202 bits (513), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 214/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+L+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L K+
Sbjct: 350 YLQIIENLTKR 360
Score = 116 bits (291), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 124/262 (47%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 97.4 bits (241), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P ++VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|340399426|ref|YP_004728451.1| putative ATP-dependent RNA helicase [Streptococcus salivarius CCHSS3]
gi|387760754|ref|YP_006067731.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
salivarius 57.I]
gi|418018420|ref|ZP_12657976.1| putative ATP-dependent RNA helicase [Streptococcus salivarius M18]
gi|338743419|emb|CCB93927.1| putative ATP-dependent RNA helicase exp9 (Exported protein 9)
[Streptococcus salivarius CCHSS3]
gi|339291521|gb|AEJ52868.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
salivarius 57.I]
gi|345527269|gb|EGX30580.1| putative ATP-dependent RNA helicase [Streptococcus salivarius M18]
Length = 528
Score = 202 bits (513), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLGIIENLTKK 360
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPD 186
Score = 91.3 bits (225), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRVIRDFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
Length = 525
Score = 202 bits (513), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|419781258|ref|ZP_14307090.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
gi|383184650|gb|EIC77164.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
Length = 525
Score = 202 bits (513), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 116 bits (291), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 124/262 (47%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|150025027|ref|YP_001295853.1| DEAD/DEAH box helicase [Flavobacterium psychrophilum JIP02/86]
gi|149771568|emb|CAL43039.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium psychrophilum JIP02/86]
Length = 444
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 215/420 (51%), Gaps = 73/420 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ I E I++AL PT+IQ +P L ++ D +G A+TG+GKT AFG+P+L
Sbjct: 4 QFANLGIAEPILKALLDLKITVPTEIQQKSVPVLLSSQDDFIGLAKTGTGKTAAFGLPLL 63
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
+ + K+ A+IL PTREL
Sbjct: 64 ---------------------------------------QLINVNNAKIQAVILVPTREL 84
Query: 889 AIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
Q+ ++ KY P V +A V GG+ + Q+ L + HI+VATPGRL + I+ G +
Sbjct: 85 GNQIFTNLESFAKYLPEVSIASVCGGIPIKPQIERLQQTTHIVVATPGRLIDLIKRGAIN 144
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
+ E INYL++DE D M + LK LD + + + + R+T++FSAT+ ++K +
Sbjct: 145 IKE---INYLILDEADEMATA-----LKEGLDEIAI-DLPKNRKTWLFSATMPGTVKQLV 195
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
SKKV++ S+ E +G ++ I+ EK
Sbjct: 196 Q----NYMSKKVTQVSASM------------------EIVG-NSSINHEYIVVDPIEKLE 232
Query: 1068 YLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
L +F+ G R ++FC + ++V +L + L + + S +H S+ Q R + +D+FR
Sbjct: 233 VLMHFLTSKEGQRGIIFCKTKAAVNKLAKNLAINRFSSGAIHGSLTQPIRDRIMDQFRAG 292
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+ +IL+ATD+AARG+D+ I +V++YH+P E Y+HRSGRTARA G +L +++ +EI
Sbjct: 293 HINILVATDLAARGIDVKEISYVVNYHLPDVHETYVHRSGRTARAGANGFSLTILQQEEI 352
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 137/270 (50%), Gaps = 31/270 (11%)
Query: 435 PSIKRLQDLLNI--KSP-KIVDLTEKIGITKTLTESKILCKHDEKDSYL----------- 480
P I+RLQ +I +P +++DL ++ I IL + DE + L
Sbjct: 115 PQIERLQQTTHIVVATPGRLIDLIKRGAINIKEINYLILDEADEMATALKEGLDEIAIDL 174
Query: 481 ------YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 534
+ F PG T+ + +Q+ ++ K ++ E +G ++ I+ EK
Sbjct: 175 PKNRKTWLFSATMPG-TVKQLVQNYMSKKVTQVSASMEIVG-NSSINHEYIVVDPIEKLE 232
Query: 535 YLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 593
L +F+ G R ++FC + ++V +L + L + + S +H S+ Q R + +D+FR
Sbjct: 233 VLMHFLTSKEGQRGIIFCKTKAAVNKLAKNLAINRFSSGAIHGSLTQPIRDRIMDQFRAG 292
Query: 594 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+ +IL+ATD+AARG+D+ I +V++YH+P E Y+HRSGRTARA G ++ +++ +EI
Sbjct: 293 HINILVATDLAARGIDVKEISYVVNYHLPDVHETYVHRSGRTARAGANGFSLTILQQEEI 352
Query: 654 --------PLKTKFNLQEEENNEEEERAEA 675
L KF E+ N E E A
Sbjct: 353 AEIADFEKALGIKFEKFEKPNPESIEENNA 382
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 111/233 (47%), Gaps = 49/233 (21%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ I E I++AL PT+IQ +P L ++ D +G A+TG+GKT AFG+P+L
Sbjct: 4 QFANLGIAEPILKALLDLKITVPTEIQQKSVPVLLSSQDDFIGLAKTGTGKTAAFGLPLL 63
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
+ + K+ A+IL PTREL
Sbjct: 64 ---------------------------------------QLINVNNAKIQAVILVPTREL 84
Query: 272 AIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
Q+ ++ KY P V +A V GG+ + Q+ L + HI+VATPGRL + I+ G +
Sbjct: 85 GNQIFTNLESFAKYLPEVSIASVCGGIPIKPQIERLQQTTHIVVATPGRLIDLIKRGAIN 144
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
+ E INYL++DE D M + LK LD + + + + R+T + S P
Sbjct: 145 IKE---INYLILDEADEMATA-----LKEGLDEIAI-DLPKNRKTWLFSATMP 188
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A+IL PTREL Q+ ++ KY P V +A V GG+ + Q+ L + HI+VATPG L
Sbjct: 75 AVILVPTRELGNQIFTNLESFAKYLPEVSIASVCGGIPIKPQIERLQQTTHIVVATPGRL 134
Query: 1415 SLKRIDLAK 1423
IDL K
Sbjct: 135 ----IDLIK 139
>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430842364|ref|ZP_19460279.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|431081588|ref|ZP_19495678.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|431118220|ref|ZP_19498174.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|431592214|ref|ZP_19521450.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|431738949|ref|ZP_19527889.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|431740772|ref|ZP_19529683.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430493445|gb|ELA69748.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|430565520|gb|ELB04666.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|430568177|gb|ELB07234.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|430591839|gb|ELB29866.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|430596492|gb|ELB34316.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|430602855|gb|ELB40405.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
Length = 503
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 140/468 (29%), Positives = 229/468 (48%), Gaps = 79/468 (16%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE +++++ + GF+ T IQ+ +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQAETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DE D M+ G +++ I+ +V + RQT +FSAT+ ++KN + +K
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PEQRQTLLFSATMPPAIKN-IGVK----- 194
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFIL 1074
+KSP V + K + + + K EK D F +
Sbjct: 195 ------------------FMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDV 236
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q P T+VF + V L + L +H ++Q++R+ L F++ + IL+AT
Sbjct: 237 QTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILVAT 296
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G+++ + +E+ + N
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIEN 356
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
+K++ P ++ + L ++E +E+K+ +N D +L
Sbjct: 357 LTKKRMTTLRPPTEKEAF-----KGQLGAAVEQIETKLAENGLDKYLQ 399
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 50/231 (21%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE +++++ + GF+ T IQ+ +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQAETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKNI 388
LV+DE D M+ G +++ I+ +V + RQT++ S P +KNI
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PEQRQTLLFSATMPPAIKNI 191
Score = 94.0 bits (232), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+KSP V + K + + + K EK D F +Q P T+VF + V L
Sbjct: 196 MKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L +H ++Q++R+ L F++ + IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 ARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G++V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ L++APTRELAIQ Q + G+ V+V V GG +Q+R L PHI+V T
Sbjct: 67 RHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGT 126
Query: 1411 PGAL 1414
PG +
Sbjct: 127 PGRM 130
Score = 41.2 bits (95), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA G+++ + +E+ + N +K++ P ++
Sbjct: 320 PESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAF----- 374
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAK 1325
+ L ++E +E+K+ +N D +L+ A K
Sbjct: 375 KGQLGAAVEQIETKLAENGLDKYLQTADK 403
>gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
C150]
gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
C150]
Length = 528
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLGIIENLTKK 360
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPD 186
Score = 90.9 bits (224), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRVIRDFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVAPNEM 348
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
Length = 524
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 97.4 bits (241), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|339640657|ref|ZP_08662101.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339453926|gb|EGP66541.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 517
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 213/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF+ + IQ +P AL A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFEEASPIQEQTIPLAL-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I NPT + ALI+APTRE
Sbjct: 60 LEKI--DTTNPT-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQCQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + L++DE D M+ G ++++I+ RV + RQT +FSAT+ +
Sbjct: 141 LNH---VETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDA----- 187
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
IKR+ + +K P+ V + K T+ + + I K +EK D
Sbjct: 188 ------------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ + P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVDQPDLSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 116 bits (291), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF+ + IQ +P AL A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFEEASPIQEQTIPLAL-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I NPT + ALI+APTRE
Sbjct: 60 LEKI--DTTNPT-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQCQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNH---VETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ + P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVDQPDLSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.9 bits (159), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQCQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|49903707|gb|AAH75762.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
Length = 468
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 145/450 (32%), Positives = 221/450 (49%), Gaps = 79/450 (17%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
MA + + E +I+ Q G PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIP-AILDGRDCMGCAKTGSGKTAAFVLP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
VL++L E+ ++ L+L PTR
Sbjct: 60 ----------------------------VLQKLSEDPYG-----------VFCLVLTPTR 80
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA Q+ GK +K +VGGM Q L+K PH++VATPGRL + I+
Sbjct: 81 ELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPHVVVATPGRLADHIRSSD- 139
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
L +I +L++DE DR++E G K++ V ++ RQT +FSATLT +L+
Sbjct: 140 -TINLNRIQFLIMDEADRLLEQGCTDFTKDL--EVILSAVPAKRQTLLFSATLTDTLQ-- 194
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
+LQ + + P + + + L + IL KD
Sbjct: 195 ---------------------QLQSI-AMNRPFFWEHKSDVQTVEELDQRFILTPEKVKD 232
Query: 1067 SYLYYFIL----QHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
+YL + I +H +++ F N+ S + LT +L + LH+ M QRQR NL
Sbjct: 233 AYLVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLV 292
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
+F+ IL+ATDVAARGLDIP ++ VI+++ P +IYIHR GRTARA G+++ L+
Sbjct: 293 KFKSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLV 352
Query: 1182 ESDEIPLYIKMFNSLEK--KVDLPDFPIDE 1209
+I L N++E+ + L +FPI+E
Sbjct: 353 TQYDIHL----INAIEEQNQTKLKEFPIEE 378
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 100/183 (54%), Gaps = 10/183 (5%)
Query: 491 TLCEEIQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHP 544
TL + +Q L +I P + + + L + IL KD+YL + I +H
Sbjct: 188 TLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAYLVHLIQTFQDEHD 247
Query: 545 GRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++ F N+ S + LT +L + LH+ M QRQR NL +F+ IL+ATDV
Sbjct: 248 DWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLVKFKSNVFKILIATDV 307
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQE 663
AARGLDIP ++ VI+++ P +IYIHR GRTARA G+++ L+ +I L N E
Sbjct: 308 AARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL---INAIE 364
Query: 664 EEN 666
E+N
Sbjct: 365 EQN 367
Score = 102 bits (255), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 116/266 (43%), Gaps = 72/266 (27%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
MA + + E +I+ Q G PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIP-AILDGRDCMGCAKTGSGKTAAFVLP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
VL++L E+ ++ L+L PTR
Sbjct: 60 ----------------------------VLQKLSEDPYG-----------VFCLVLTPTR 80
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA Q+ GK +K +VGGM Q L+K PH++VATPGRL + I+
Sbjct: 81 ELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPHVVVATPGRLADHIRSS-- 138
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
L +I +L++DE DR++E G K++
Sbjct: 139 DTINLNRIQFLIMDEADRLLEQGCTDFTKDL----------------------------- 169
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLK 415
V ++ RQT +FSATLT +L+
Sbjct: 170 -EVILSAVPAKRQTLLFSATLTDTLQ 194
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y L+L PTRELA Q+ GK +K +VGGM Q L+K PH++VATP
Sbjct: 69 YGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPHVVVATP 128
Query: 1412 GAL-----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRE 1466
G L S I+L + I++L + D LE+ D D E ++ R+
Sbjct: 129 GRLADHIRSSDTINLNR-IQFL----IMDEADRLLEQGCTDF--TKDLEVILSAVPAKRQ 181
Query: 1467 NALMSKALVSKRKELQSL 1484
L S L ++LQS+
Sbjct: 182 TLLFSATLTDTLQQLQSI 199
>gi|420435575|ref|ZP_14934574.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-27]
gi|393051434|gb|EJB52385.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-27]
Length = 491
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 205/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
Length = 528
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLGIIENLTKK 360
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPD 186
Score = 90.5 bits (223), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRIIRDFKNGQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVSPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|387784682|ref|YP_006070765.1| ATP-dependent RNA helicase [Streptococcus salivarius JIM8777]
gi|338745564|emb|CCB95930.1| ATP-dependent RNA helicase [Streptococcus salivarius JIM8777]
Length = 528
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 N---IETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIKVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLGIIENLTKK 360
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPD 186
Score = 90.9 bits (224), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IKVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRVIRDFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|385218535|ref|YP_005780010.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
Length = 491
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 205/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|417940539|ref|ZP_12583827.1| DEAD/DEAH box helicase [Streptococcus oralis SK313]
gi|343389420|gb|EGV02005.1| DEAD/DEAH box helicase [Streptococcus oralis SK313]
Length = 518
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+L+ I L++DE D M+ G +++ I+ RV RQT +FSAT+ +
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PDSRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 116 bits (291), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 124/262 (47%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L+ I L++DE D M+ G +++ I+ RV RQT++ S P + + R+
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PDSRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 96.7 bits (239), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + +E+ I + D L +M + D E +I +SR+ L S
Sbjct: 131 ---LDLIKRKALKLHDIETLI-LDEADEML-----NMGFLEDIEAIISRVPDSRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
Length = 435
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/408 (32%), Positives = 209/408 (51%), Gaps = 68/408 (16%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
I+RA+ ++G+ TPT IQS +P +L++KD++ AA+TG+GKT F +P+L +
Sbjct: 12 ILRAIKEEGYTTPTPIQSKSIP-VILSKKDVLAAAQTGTGKTAGFTLPLLQRL------- 63
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
DS L+++ +V ALIL PTRELA QV +
Sbjct: 64 -----KDSNLKDKKTQV----------------------RALILTPTRELAAQVAQSVET 96
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958
GKY P K A + GG+ Q +L K I++ATPGRL + I +L KI +LV
Sbjct: 97 YGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIATPGRLLDLISQDSL---DLSKIEFLV 153
Query: 959 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
+DE DRM++ G ++K IL + + RQ +FSAT ++
Sbjct: 154 LDEADRMLDMGFINDIKKILAIL-----PKQRQNLLFSATFSN----------------- 191
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
IK+L D L +KSP +V++++ + + + D K L + + ++
Sbjct: 192 ------EIKKLADGL-LKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNKNSW 244
Query: 1079 -RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
+ LVF + +L++ L K + +H + +Q R K LD F++ +L+ATD+A
Sbjct: 245 QQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIA 304
Query: 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
ARG+DI + HV+++ +P +E Y+HR GRT RA N G+ + L+ DE
Sbjct: 305 ARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDE 352
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 44/230 (19%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
I+RA+ ++G+ TPT IQS +P +L++KD++ AA+TG+GKT F +P+L +
Sbjct: 12 ILRAIKEEGYTTPTPIQSKSIP-VILSKKDVLAAAQTGTGKTAGFTLPLLQRL------- 63
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
DS L+++ +V ALIL PTRELA QV +
Sbjct: 64 -----KDSNLKDKKTQV----------------------RALILTPTRELAAQVAQSVET 96
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341
GKY P K A + GG+ Q +L K I++ATPGRL + I +L KI +LV
Sbjct: 97 YGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIATPGRLLDLISQDSL---DLSKIEFLV 153
Query: 342 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNILD 390
+DE DRM++ G ++K IL + + RQ ++ S F E+K + D
Sbjct: 154 LDEADRMLDMGFINDIKKILAIL-----PKQRQNLLFSATFSNEIKKLAD 198
Score = 91.7 bits (226), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-T 547
T EI+ L + +KSP +V++++ + + + D K L + + ++ +
Sbjct: 188 TFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNKNSWQQV 247
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + +L++ L K + +H + +Q R K LD F++ +L+ATD+AARG
Sbjct: 248 LVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIAARG 307
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+DI + HV+++ +P +E Y+HR GRT RA N G+ + L+ DE
Sbjct: 308 IDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDE 352
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 70/139 (50%), Gaps = 18/139 (12%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
ALIL PTRELA QV + GKY P K A + GG+ Q +L K I++ATPG L
Sbjct: 77 ALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIATPGRLL 136
Query: 1415 ---SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAK--DMDIIIDDENLIQPKANSRENAL 1469
S +DL+K IE+L L++A + DM I D + ++ R+N L
Sbjct: 137 DLISQDSLDLSK-IEFL-----------VLDEADRMLDMGFINDIKKILAILPKQRQNLL 184
Query: 1470 MSKALVSKRKELQSLLGKS 1488
S ++ K+L L KS
Sbjct: 185 FSATFSNEIKKLADGLLKS 203
>gi|420398321|ref|ZP_14897534.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1962]
gi|393014995|gb|EJB16166.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1962]
Length = 492
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 206/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I T ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +Y++P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYYLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 97.4 bits (241), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +Y++P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYYLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|420424845|ref|ZP_14923909.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-5]
gi|393043432|gb|EJB44436.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-5]
Length = 491
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 205/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I ++ +H+ ++ + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQV 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ ++ + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEAIMRLLDTQVPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 SSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC 700779]
gi|419842756|ref|ZP_14366093.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|421277111|ref|ZP_15727931.1| ATP-dependent RNA helicase DeaD [Streptococcus mitis SPAR10]
gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC 700779]
gi|385703701|gb|EIG40814.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|395876392|gb|EJG87468.1| ATP-dependent RNA helicase DeaD [Streptococcus mitis SPAR10]
Length = 524
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 213/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEVEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+L+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 117 bits (292), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 125/262 (47%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEVEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKR---KAL 139
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 140 KLHDIETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 96.7 bits (239), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ + P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
Length = 435
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 220/437 (50%), Gaps = 71/437 (16%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
I+RA+ ++G+ TPT IQS +P +L++KD++ AA+TG+GKT F +P+L +
Sbjct: 12 ILRAIKEEGYTTPTPIQSKSIP-VILSKKDVLAAAQTGTGKTAGFTLPLLQRL------- 63
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
+D N K + ++ ALIL PTRELA QV +
Sbjct: 64 --KDSN-------------------------FKDKKTQVRALILTPTRELAAQVAQSVET 96
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958
GKY P K A + GG+ Q +L K I++ATPGRL + I +L KI +LV
Sbjct: 97 YGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIATPGRLLDLISQDSL---DLSKIEFLV 153
Query: 959 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
+DE DRM++ G ++K IL + + RQ +FSAT ++
Sbjct: 154 LDEADRMLDMGFINDIKKILAIL-----PKQRQNLLFSATFSNE---------------- 192
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
IK+L D L +KSP +V++++ + + + D K L + + ++
Sbjct: 193 -------IKKLADGL-LKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNKNSW 244
Query: 1079 R-TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
+ LVF + +L++ L K + +H + +Q R K LD F++ +L+ATD+A
Sbjct: 245 QQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIA 304
Query: 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI---KMFN 1194
ARG+DI + HV+++ +P +E Y+HR GRT RA N G+ + L+ DE K+
Sbjct: 305 ARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDEHEYLFGIEKLIK 364
Query: 1195 SLEKKVDLPDFPIDESV 1211
KKV++ F ++ ++
Sbjct: 365 QKIKKVEINGFKVNPNI 381
Score = 121 bits (304), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 119/230 (51%), Gaps = 44/230 (19%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
I+RA+ ++G+ TPT IQS +P +L++KD++ AA+TG+GKT F +P+L +
Sbjct: 12 ILRAIKEEGYTTPTPIQSKSIP-VILSKKDVLAAAQTGTGKTAGFTLPLLQRL------- 63
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
+D N K + ++ ALIL PTRELA QV +
Sbjct: 64 --KDSN-------------------------FKDKKTQVRALILTPTRELAAQVAQSVET 96
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341
GKY P K A + GG+ Q +L K I++ATPGRL + I +L KI +LV
Sbjct: 97 YGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIATPGRLLDLISQDSL---DLSKIEFLV 153
Query: 342 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNILD 390
+DE DRM++ G ++K IL + + RQ ++ S F E+K + D
Sbjct: 154 LDEADRMLDMGFINDIKKILAIL-----PKQRQNLLFSATFSNEIKKLAD 198
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-T 547
T EI+ L + +KSP +V++++ + + + D K L + + ++ +
Sbjct: 188 TFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNKNSWQQV 247
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + +L++ L K + +H + +Q R K LD F++ +L+ATD+AARG
Sbjct: 248 LVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIAARG 307
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+DI + HV+++ +P +E Y+HR GRT RA N G+ + L+ DE
Sbjct: 308 IDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDE 352
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 70/139 (50%), Gaps = 18/139 (12%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
ALIL PTRELA QV + GKY P K A + GG+ Q +L K I++ATPG L
Sbjct: 77 ALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIATPGRLL 136
Query: 1415 ---SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAK--DMDIIIDDENLIQPKANSRENAL 1469
S +DL+K IE+L L++A + DM I D + ++ R+N L
Sbjct: 137 DLISQDSLDLSK-IEFL-----------VLDEADRMLDMGFINDIKKILAILPKQRQNLL 184
Query: 1470 MSKALVSKRKELQSLLGKS 1488
S ++ K+L L KS
Sbjct: 185 FSATFSNEIKKLADGLLKS 203
>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
Length = 522
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 146/466 (31%), Positives = 227/466 (48%), Gaps = 77/466 (16%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE +++A+ + GF+ T IQS +P AL R D++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKAVERSGFEEATPIQSETIPLALSGR-DVIGQAQTGTGKTAAFGLPML------- 60
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E + + + L L+++PTRELAIQ Q
Sbjct: 61 --------------------------------EKIDTSSSHLQGLVISPTRELAIQTQEE 88
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ GK V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGKDKKVRVMAVYGGADIGRQIRQLKDRPHIVVGTPGRMLDHI---NRHTLKLETVE 145
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DE D M+ G ++++I+ +V T RQT +FSAT+ ++K S+ +K Q+
Sbjct: 146 TLVLDEADEMLNMGFLEDIESIISKVPST-----RQTLLFSATMPPAIK-SIGVKFMQNP 199
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 1075
K L D ++S EK I L + +Q
Sbjct: 200 EHVKIKAKEMTADLIDQYYVRSKDF----EKFDIMTRLLD------------------VQ 237
Query: 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
P T++F + V L + L +H ++Q++R+ L F++ N IL+ATD
Sbjct: 238 TPELTIIFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATD 297
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195
VAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G+++ + +E+ Y+ +
Sbjct: 298 VAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMS-YLHTIEN 356
Query: 1196 LEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWL 1241
L KK P P E K + L ++E +ESK+ +N D +L
Sbjct: 357 LTKKRMTPLRPPTEK--EAFKGQ--LGAALEEIESKMDENGLDRYL 398
Score = 116 bits (291), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 49/225 (21%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE +++A+ + GF+ T IQS +P AL R D++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKAVERSGFEEATPIQSETIPLALSGR-DVIGQAQTGTGKTAAFGLPML------- 60
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E + + + L L+++PTRELAIQ Q
Sbjct: 61 --------------------------------EKIDTSSSHLQGLVISPTRELAIQTQEE 88
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ GK V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGKDKKVRVMAVYGGADIGRQIRQLKDRPHIVVGTPGRMLDHI---NRHTLKLETVE 145
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
LV+DE D M+ G ++++I+ +V T RQT++ S P
Sbjct: 146 TLVLDEADEMLNMGFLEDIESIISKVPST-----RQTLLFSATMP 185
Score = 91.7 bits (226), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 67/113 (59%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+Q P T++F + V L + L +H ++Q++R+ L F++ N IL+A
Sbjct: 236 VQTPELTIIFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVA 295
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
TDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G++V + +E+
Sbjct: 296 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+++PTRELAIQ Q + GK V+V V GG +Q+R L PHI+V TPG +
Sbjct: 72 GLVISPTRELAIQTQEELYRLGKDKKVRVMAVYGGADIGRQIRQLKDRPHIVVGTPGRM 130
Score = 42.4 bits (98), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA G+++ + +E+ Y+ +L KK P P E K
Sbjct: 320 PESYVHRIGRTGRAGKGGMSVTFVTPNEMS-YLHTIENLTKKRMTPLRPPTEK--EAFKG 376
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAKDM 1327
+ L ++E +ESK+ +N D +L AA D+
Sbjct: 377 Q--LGAALEEIESKMDENGLDRYLS-AADDL 404
>gi|401684066|ref|ZP_10815949.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
gi|400186371|gb|EJO20583.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
Length = 520
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
T E ++ + + AL++APTRELA
Sbjct: 59 ------------------------------------TLEKIRTEESTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
T E ++ + + AL++APTRELA
Sbjct: 59 ------------------------------------TLEKIRTEESTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|326403205|ref|YP_004283286.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
gi|325050066|dbj|BAJ80404.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
Length = 510
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/413 (31%), Positives = 206/413 (49%), Gaps = 72/413 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E I++AL +KG+ PT IQ +P+ L+ R D++G A+TG+GKT +F +P+L
Sbjct: 28 FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGR-DVLGCAQTGTGKTASFTLPML- 85
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-YALILAPTREL 888
++L + R ++ +LIL PTREL
Sbjct: 86 ------------------------DILSG------------SRARARMPRSLILEPTREL 109
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+QV + + GK+ + A ++GG S +Q +L + +L+ATPGRL + + G L
Sbjct: 110 ALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVDVLIATPGRLIDIFERGGLLL 169
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
++ + LVIDE DRM++ G P+++ I V++ T RQT FSAT+
Sbjct: 170 SD---VRVLVIDEADRMLDMGFIPDIERI---VSLLPTM--RQTLFFSATMA-------- 213
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES-KILCKHDEKDS 1067
P I+RL D + +PK + ++ + T+TE ++ HD++++
Sbjct: 214 ---------------PEIRRLADAF-LSNPKQITVSRPATVATTITEGLSLVATHDKREA 257
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ LVFCN V L + LT K S LH M Q R L+RF+
Sbjct: 258 LRRLIRTEDVQNALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGE 317
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+L+ +DVAARG+DI G+ HV ++ VP +E Y+HR GRT RA +G L L
Sbjct: 318 IRLLVCSDVAARGIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTL 370
Score = 162 bits (411), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 135/497 (27%), Positives = 214/497 (43%), Gaps = 156/497 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E I++AL +KG+ PT IQ +P+ L+ R D++G A+TG+GKT +F +P+L
Sbjct: 28 FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGR-DVLGCAQTGTGKTASFTLPML- 85
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-YALILAPTREL 271
++L + R ++ +LIL PTREL
Sbjct: 86 ------------------------DILSG------------SRARARMPRSLILEPTREL 109
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+QV + + GK+ + A ++GG S +Q +L + +L+ATPGRL + + G L
Sbjct: 110 ALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVDVLIATPGRLIDIFERGGLLL 169
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
++ + LVIDE DRM++ G P+++ I V++ T
Sbjct: 170 SD---VRVLVIDEADRMLDMGFIPDIERI---VSLLPTM--------------------- 202
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
RQT FSAT+ P I+RL D + +PK
Sbjct: 203 ---------RQTLFFSATMA-----------------------PEIRRLADAF-LSNPKQ 229
Query: 452 VDLTEKIGITKTLTES-KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
+ ++ + T+TE ++ HD++++ L I RT E++Q+ L + K
Sbjct: 230 ITVSRPATVATTITEGLSLVATHDKREA-LRRLI-----RT--EDVQNALVFCNRK---- 277
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
+ ILCK LT K S
Sbjct: 278 ----------RDVDILCKS----------------------------------LTRHKFS 293
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
LH M Q R L+RF+ +L+ +DVAARG+DI G+ HV ++ VP +E Y+H
Sbjct: 294 AGMLHGDMPQSARFATLERFKAGEIRLLVCSDVAARGIDIGGLSHVFNFDVPHHAEDYVH 353
Query: 631 RSGRTARANNEGLTVVL 647
R GRT RA +G + L
Sbjct: 354 RIGRTGRAGMQGRALTL 370
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+LIL PTRELA+QV + + GK+ + A ++GG S +Q +L + +L+ATPG L
Sbjct: 100 SLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVDVLIATPGRL- 158
Query: 1416 LKRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSK 1472
ID+ + L S ++ + D L DM I D E ++ R+ S
Sbjct: 159 ---IDIFERGGLLLSDVRVLVIDEADRML-----DMGFIPDIERIVSLLPTMRQTLFFSA 210
Query: 1473 ALVSKRKEL 1481
+ + + L
Sbjct: 211 TMAPEIRRL 219
>gi|386087169|ref|YP_006003043.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus ND03]
gi|386345260|ref|YP_006041424.1| ATP-dependent RNA helicase [Streptococcus thermophilus JIM 8232]
gi|387910270|ref|YP_006340576.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus MN-ZLW-002]
gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus ND03]
gi|339278721|emb|CCC20469.1| ATP-dependent RNA helicase [Streptococcus thermophilus JIM 8232]
gi|387575205|gb|AFJ83911.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus MN-ZLW-002]
Length = 528
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 N---IETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
I++ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DIMVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLGIIENLTKK 360
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPD 186
Score = 90.1 bits (222), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ I++ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRIIRDFKNGQIDIMVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVSPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus suis
ST3]
gi|386584595|ref|YP_006080998.1| DEAD/DEAH box helicase [Streptococcus suis D9]
gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
gi|353736741|gb|AER17750.1| DEAD/DEAH box helicase domain protein [Streptococcus suis D9]
Length = 526
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 207/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E I+ A+ + GF+TP+ IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I D N+ ++ ALI+APTRELA
Sbjct: 62 KI----------DTNNQAIQ-----------------------------ALIIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLD 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN-SLN 1008
+ L++DE D M+ G +++ I++RV + RQT +FSAT+ +K +
Sbjct: 143 ---GVETLILDEADEMLNMGFLDDIEAIIERV-----PESRQTLLFSATMPEPIKRIGVK 194
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
K K +K ++ Q L +K +H++ D+
Sbjct: 195 FMKEPEHVKIAAKELTNVNVDQYYLRVK------------------------EHEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + L KK
Sbjct: 350 YLAIIEDLTKK 360
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E I+ A+ + GF+TP+ IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I D N+ ++ ALI+APTRELA
Sbjct: 62 KI----------DTNNQAIQ-----------------------------ALIIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLD 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ L++DE D M+ G +++ I++RV + RQT++ S PE
Sbjct: 143 ---GVETLILDEADEMLNMGFLDDIEAIIERV-----PESRQTLLFSATMPE 186
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 71/125 (56%)
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
H++ D+ + P ++VF + V LT+ L + +H ++Q +RL+ +
Sbjct: 224 HEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIR 283
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
F++ +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ +
Sbjct: 284 DFKNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFV 343
Query: 649 ESDEI 653
+E+
Sbjct: 344 SPNEM 348
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++ +E+ I + D L +M + D E +I+ SR+ L S
Sbjct: 131 ---LDLIKRKALKLDGVETLI-LDEADEML-----NMGFLDDIEAIIERVPESRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|417935461|ref|ZP_12578778.1| DEAD/DEAH box helicase [Streptococcus infantis X]
gi|343402370|gb|EGV14875.1| DEAD/DEAH box helicase [Streptococcus infantis X]
Length = 524
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEVEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 116 bits (291), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 124/262 (47%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEVEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 96.7 bits (239), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ + P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|168009544|ref|XP_001757465.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691159|gb|EDQ77522.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 452
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 144/465 (30%), Positives = 224/465 (48%), Gaps = 84/465 (18%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E + A G+K PT+IQ +P AL DI+G A+TGSGKT F +PIL +
Sbjct: 24 LGVCEQLAEACDALGWKAPTQIQVDAVPVALKGH-DIIGLAQTGSGKTATFALPILQAL- 81
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LENP L+A +L+PTRELAIQ+
Sbjct: 82 --LENP------------------------------------QPLFACVLSPTRELAIQI 103
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT--- 949
G +K A +VGG+ Q L K PH++V TPGRL + HLT
Sbjct: 104 AEQFEALGSGIGLKCAVLVGGIDMMAQSVALAKRPHVVVGTPGRLVD-------HLTNTK 156
Query: 950 --ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L I YLV+DE DR++ E+ IL + + R+T++FSAT+T
Sbjct: 157 GFSLRTIKYLVLDEADRLLNMDFEQEIDEILKVI-----PKERRTYLFSATMT------- 204
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
+K K+ + +K+P V+++ K +L + + KD
Sbjct: 205 ------TKVAKLQRA-----------CLKNPVKVEVSAKYSTVDSLKQEYLFIPAKYKDC 247
Query: 1068 YLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
YL Y + + G T +VF + + ++L+ +L L +P+ M+Q +RL L +F+
Sbjct: 248 YLVYILNELAGNTAMVFTRTCEATRKLSLVLRNLGFVAIPISGQMSQPKRLGALAKFKAG 307
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+ +IL+ TDVA+RGLDIP + VI+Y +P S+ YIHR GRTARA G + ++ ++
Sbjct: 308 DCNILICTDVASRGLDIPSVNLVINYDIPTNSKDYIHRVGRTARAGRSGRAISMVCQYDV 367
Query: 1187 PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
LY K+ + KK LP+F + + L+ +R+ A+ + + +
Sbjct: 368 ELYQKIEELIGKK--LPEFSHQQEEVLLMLERVSEAQRLATMHMR 410
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 149/556 (26%), Positives = 221/556 (39%), Gaps = 178/556 (32%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E + A G+K PT+IQ +P AL DI+G A+TGSGKT F +PIL +
Sbjct: 24 LGVCEQLAEACDALGWKAPTQIQVDAVPVALKGH-DIIGLAQTGSGKTATFALPILQAL- 81
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LENP L+A +L+PTRELAIQ+
Sbjct: 82 --LENP------------------------------------QPLFACVLSPTRELAIQI 103
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT--- 332
G +K A +VGG+ Q L K PH++V TPGRL + HLT
Sbjct: 104 AEQFEALGSGIGLKCAVLVGGIDMMAQSVALAKRPHVVVGTPGRLVD-------HLTNTK 156
Query: 333 --ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L I YLV+DE DR++ E+ IL + P++
Sbjct: 157 GFSLRTIKYLVLDEADRLLNMDFEQEIDEILKVI-------PKE---------------- 193
Query: 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450
R+T++FSAT+T +K K+ + +K+P
Sbjct: 194 ----------RRTYLFSATMT-------------TKVAKLQRA-----------CLKNPV 219
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
V+++ K +L + + KD YL Y + + G T
Sbjct: 220 KVEVSAKYSTVDSLKQEYLFIPAKYKDCYLVYILNELAGNT------------------- 260
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKC 569
+ T+T C+ K S +L++ G + +S KRL L
Sbjct: 261 --AMVFTRT-------CEATRKLS----LVLRNLGFVAIPISGQMSQPKRLGAL------ 301
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+F+ + +IL+ TDVA+RGLDIP + VI+Y +P S+ YI
Sbjct: 302 ------------------AKFKAGDCNILICTDVASRGLDIPSVNLVINYDIPTNSKDYI 343
Query: 630 HRSGRTARANNEGLTVVLIESDEIPLKTK-----------FNLQEEENNEEEER-AEADK 677
HR GRTARA G + ++ ++ L K F+ Q+EE ER +EA +
Sbjct: 344 HRVGRTARAGRSGRAISMVCQYDVELYQKIEELIGKKLPEFSHQQEEVLLMLERVSEAQR 403
Query: 678 EKTEDINVTVSSKKKK 693
T + +KK K
Sbjct: 404 LATMHMREKDGAKKGK 419
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A +L+PTRELAIQ+ G +K A +VGG+ Q L K PH++V TPG L
Sbjct: 90 ACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGIDMMAQSVALAKRPHVVVGTPGRL 148
>gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
Length = 528
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------HTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLGIIENLTKK 360
Score = 122 bits (306), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------HTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPD 186
Score = 90.5 bits (223), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRIIRDFKNGQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVSPNEM 348
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase [Acidaminococcus fermentans DSM 20731]
gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans DSM
20731]
Length = 544
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 141/476 (29%), Positives = 229/476 (48%), Gaps = 78/476 (16%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
++ + N+ I+ AL + GF+ P+ IQ +P AL +D++G A+TG+GKT AFGI
Sbjct: 17 EITSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEG-EDLIGQAQTGTGKTAAFGI 75
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
PI+ I +E D ++ AL+++PT
Sbjct: 76 PIIQKI----------NEKDRHIQ-----------------------------ALVMSPT 96
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
REL IQV + I GK ++V V GG E+Q+R L + +++ TPGRL + I+ G
Sbjct: 97 RELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIRSLKRGIQVVIGTPGRLLDHIRRGT 156
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+L +N+LV+DE D M++ G +++NI+ V RQT +FSAT+ +
Sbjct: 157 I---DLEYVNFLVLDEADEMLDMGFVDDMENIIKNV-----PPERQTMLFSATMPRPI-- 206
Query: 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 1065
S SKK +++PK+V + +++ +T + D+
Sbjct: 207 -------LSISKKY---------------MRAPKVVAIHKEV-VTAPTIDQYYYETRDKV 243
Query: 1066 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
D + ++FC + V L L LH ++Q QR + + +FR
Sbjct: 244 DGLCRILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRS 303
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
IL+ATDVAARGLDI I HV+++ VP SE Y+HR GRT RA N G+ L I E
Sbjct: 304 GQVDILVATDVAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPRE 363
Query: 1186 IPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWL 1241
+ S++ K+ P D SVL +++I + +++ ++++R ++L
Sbjct: 364 FRQLKLIERSIKTKIIRGTLPTDASVLERQREQI-----VSKMQTILEQDRYQDYL 414
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 137/505 (27%), Positives = 212/505 (41%), Gaps = 157/505 (31%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
++ + N+ I+ AL + GF+ P+ IQ +P AL +D++G A+TG+GKT AFGI
Sbjct: 17 EITSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEG-EDLIGQAQTGTGKTAAFGI 75
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
PI+ I +E D ++ AL+++PT
Sbjct: 76 PIIQKI----------NEKDRHIQ-----------------------------ALVMSPT 96
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
REL IQV + I GK ++V V GG E+Q+R L + +++ TPGRL + I+ G
Sbjct: 97 RELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIRSLKRGIQVVIGTPGRLLDHIRRGT 156
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
+L +N+LV+DE D M++ G +++NI
Sbjct: 157 I---DLEYVNFLVLDEADEMLDM----------------------------GFVDDMENI 185
Query: 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 448
+ V RQT +FSAT+ + S SKK +++
Sbjct: 186 IKNV-----PPERQTMLFSATMPRPI---------LSISKKY---------------MRA 216
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508
PK+V + +++ T+ + YY+ + LC +I+
Sbjct: 217 PKVVAIHKEVVTAPTIDQ--------------YYYETRDKVDGLC------------RIL 250
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 568
D T+ CK ++FC + V L L
Sbjct: 251 DTTDD-------------CK------------------MIIFCRTKKGVDELVIALATRG 279
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
LH ++Q QR + + +FR IL+ATDVAARGLDI I HV+++ VP SE Y
Sbjct: 280 YEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATDVAARGLDIDNITHVVNFDVPSDSESY 339
Query: 629 IHRSGRTARANNEGLTVVLIESDEI 653
+HR GRT RA N G+ + I E
Sbjct: 340 VHRIGRTGRAGNTGVALTFITPREF 364
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+++PTREL IQV + I GK ++V V GG E+Q+R L + +++ TPG L
Sbjct: 90 ALVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIRSLKRGIQVVIGTPGRLL 149
Query: 1415 -SLKR--IDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
++R IDL EY+ + + D L DM + D EN+I+ R+ L S
Sbjct: 150 DHIRRGTIDL----EYVNFLV-LDEADEML-----DMGFVDDMENIIKNVPPERQTMLFS 199
Query: 1472 KAL 1474
+
Sbjct: 200 ATM 202
>gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei F0415]
gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei F0415]
Length = 521
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + ++ E I++A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELHLAEDILQAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I ++N N + AL++APTRELA
Sbjct: 62 KIA--IDN-------------------------------------NVIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S +KQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ L++DE D M+ G +++ I+ V RQT +FSAT+ ++K + +
Sbjct: 143 H---VETLILDEADEMLNMGFLEDIEAIISHV-----PDERQTLLFSATMPDAIKR-IGV 193
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
K +K P+ V + K + + + I K EK D+
Sbjct: 194 K-----------------------FMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P ++VF + V LT+ L + +H ++Q +RL+ + F++ N
Sbjct: 231 TRLIDIEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLSIIENLTKK 360
Score = 119 bits (297), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 124/259 (47%), Gaps = 51/259 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + ++ E I++A+ + GF P+ IQ M +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELHLAEDILQAVEKAGFVEPSPIQEMTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I ++N N + AL++APTRELA
Sbjct: 62 KIA--IDN-------------------------------------NVIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S +KQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ L++DE D M+ G +++ I+ V RQT++ S P + + R+
Sbjct: 143 H---VETLILDEADEMLNMGFLEDIEAIISHV-----PDERQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLT 411
+ +P + + LT
Sbjct: 192 GVKFMKEPEHVKIAAKELT 210
Score = 95.1 bits (235), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K + + + I K EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLIDIEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ + F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G +V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEM 348
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S +KQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALRSGAHIVVGTPGRL 130
>gi|417793177|ref|ZP_12440462.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus oralis SK255]
gi|334274175|gb|EGL92503.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus oralis SK255]
Length = 520
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 96.7 bits (239), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|425772845|gb|EKV11231.1| hypothetical protein PDIP_56740 [Penicillium digitatum Pd1]
gi|425773582|gb|EKV11927.1| hypothetical protein PDIG_47360 [Penicillium digitatum PHI26]
Length = 1107
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 136/422 (32%), Positives = 214/422 (50%), Gaps = 63/422 (14%)
Query: 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN-KLENPTEEDEN 844
+ F PT IQS P L A +D++G AETGSGKTL FG+P L +++ K P +
Sbjct: 709 RSFSAPTPIQSSTWP-LLFAGRDVIGIAETGSGKTLGFGLPCLKKLIDSKSSKPCQPK-- 765
Query: 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 904
A+I++PTRELA+Q+ + ++ G
Sbjct: 766 ----------------------------------AVIISPTRELAMQIYDQLVKFGDTEK 791
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+V C+ GG+ ++Q R L K I+VATPGRL + + G +L K+ YLV+DE DR
Sbjct: 792 TRVTCIYGGVGKDEQRRALQKAA-IVVATPGRLKDLLNDGSI---DLAKVTYLVLDEADR 847
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP 1024
M++ G ++K+I+ + ++ RQT +F+AT S+++ L ++ GDP
Sbjct: 848 MLDKGFEQDIKDIVKPMPVSR----RQTVMFTATWPRSVRD-LAASFMKTPVTVTIGGDP 902
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIG-ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 1083
S + + +++D EK G + + LT+S+ + + Q P + LVF
Sbjct: 903 SADPRANTRIKQVVEVIDGREKEGRLVQLLTKSQ---RGN-----------QSPEKVLVF 948
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
C R+ L+ + +H +NQ R +NLD F+ N ++L+ATDVAARGLDI
Sbjct: 949 CLYKKEAMRIENLIRNKGFAVAGIHGDLNQSDRFRNLDAFKKGNATVLVATDVAARGLDI 1008
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE-KKVDL 1202
P ++ VI+ P T E Y+HR GRT RA +GL + + + L + N L+ K D+
Sbjct: 1009 PNVKLVINVTFPLTVEDYVHRIGRTGRAGADGLAITMFTETDKGLSGGLINVLKAAKQDV 1068
Query: 1203 PD 1204
P+
Sbjct: 1069 PE 1070
Score = 113 bits (283), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 111/216 (51%), Gaps = 46/216 (21%)
Query: 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN-KLENPTEEDEN 227
+ F PT IQS P L A +D++G AETGSGKTL FG+P L +++ K P +
Sbjct: 709 RSFSAPTPIQSSTWP-LLFAGRDVIGIAETGSGKTLGFGLPCLKKLIDSKSSKPCQPK-- 765
Query: 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 287
A+I++PTRELA+Q+ + ++ G
Sbjct: 766 ----------------------------------AVIISPTRELAMQIYDQLVKFGDTEK 791
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+V C+ GG+ ++Q R L K I+VATPGRL + + G +L K+ YLV+DE DR
Sbjct: 792 TRVTCIYGGVGKDEQRRALQKAA-IVVATPGRLKDLLNDGSI---DLAKVTYLVLDEADR 847
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
M++ G ++K+I+ + ++ RQT++ + +P
Sbjct: 848 MLDKGFEQDIKDIVKPMPVSR----RQTVMFTATWP 879
Score = 97.1 bits (240), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%)
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
Q P + LVFC R+ L+ + +H +NQ R +NLD F+ N ++L+AT
Sbjct: 940 QSPEKVLVFCLYKKEAMRIENLIRNKGFAVAGIHGDLNQSDRFRNLDAFKKGNATVLVAT 999
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
DVAARGLDIP ++ VI+ P T E Y+HR GRT RA +GL + +
Sbjct: 1000 DVAARGLDIPNVKLVINVTFPLTVEDYVHRIGRTGRAGADGLAITMF 1046
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 15/122 (12%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA-- 1413
A+I++PTRELA+Q+ + ++ G +V C+ GG+ ++Q R L K I+VATPG
Sbjct: 766 AVIISPTRELAMQIYDQLVKFGDTEKTRVTCIYGGVGKDEQRRALQKAA-IVVATPGRLK 824
Query: 1414 --LSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
L+ IDLAK + YL + D L+K + D +++++P SR +M
Sbjct: 825 DLLNDGSIDLAK-VTYL----VLDEADRMLDKGFEQ-----DIKDIVKPMPVSRRQTVMF 874
Query: 1472 KA 1473
A
Sbjct: 875 TA 876
>gi|422852083|ref|ZP_16898753.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
Length = 523
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|422879322|ref|ZP_16925788.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
gi|422929168|ref|ZP_16962110.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis ATCC 29667]
gi|422932139|ref|ZP_16965070.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK340]
gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
gi|339615357|gb|EGQ20036.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis ATCC 29667]
gi|339618923|gb|EGQ23513.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK340]
Length = 523
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M143]
gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M143]
Length = 520
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 96.7 bits (239), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|445381685|ref|ZP_21427119.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5460]
gi|445394588|ref|ZP_21428854.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5461]
gi|444748875|gb|ELW73823.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5461]
gi|444748978|gb|ELW73920.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5460]
Length = 522
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S +KQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLGIIENLTKK 360
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S +KQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPD 186
Score = 90.9 bits (224), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRIIRDFKNGQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVSPNEM 348
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S +KQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALRSGAHIVVGTPGRL 130
>gi|146163668|ref|XP_001012102.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|146145909|gb|EAR91857.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila SB210]
Length = 533
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 150/526 (28%), Positives = 247/526 (46%), Gaps = 89/526 (16%)
Query: 725 IQSDEPHSKKLKQKKKKKQTYTSANKELL---EVD-TSNNEDMFVQMAEWVKFNIPETII 780
+ D ++ KQ+ K + E L ++D T ED+ Q + E ++
Sbjct: 54 LNDDSAEKQQAKQENKNGDQENKSGSEYLKEIQIDETEEKEDVTFQ-----SLGVCEELV 108
Query: 781 RALYQKGFKTPTKIQ--SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
A + + PT IQ S+V L ++DI+ AETGSGKTLAF +P+ I N L+ P
Sbjct: 109 EACNRLKYVKPTAIQRESLVYT---LKQRDIIALAETGSGKTLAFALPV---IQNLLDAP 162
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
YAL+L+PTREL +Q+ H
Sbjct: 163 ------------------------------------QPFYALVLSPTRELCMQIAEHFEA 186
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYL 957
G +K +VGG+ Q L+K PHI++ TPGR+ +Q F+ L +L
Sbjct: 187 LGVGISLKTTVIVGGLDPMAQAIALSKKPHIIIGTPGRILYHMQNTKGFNFKAL---KFL 243
Query: 958 VIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSK 1017
V+DE D+++ ++ ILD + + R TF+FSAT+T+
Sbjct: 244 VLDEADKLLNMDFEKDINQILDII-----PKKRNTFLFSATMTNK--------------- 283
Query: 1018 KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 1077
+ +LQ ++K P ++++ K + TL KD YL Y + +
Sbjct: 284 --------VHKLQRA-SLKDPVKIEVSSKYQMVSTLVAQYAFIPAKYKDCYLVYSLNEFA 334
Query: 1078 GRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
G T ++F + + +LT +L L S + +H M+Q +RL +++F+ IL+ATDV
Sbjct: 335 GNTSIIFVQTCLNAIKLTLMLRNLGFSAVTIHGQMSQVKRLGAINKFKSGEKKILVATDV 394
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDIP ++ VI+Y +P ++ Y+HR GRTARA G + + ++ +Y+K+ +
Sbjct: 395 ASRGLDIPSVDLVINYDIPTNAKEYVHRVGRTARAGRAGKAISFVTQYDVEMYLKIEALI 454
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
KK+D + +E + + +R+ A+ I E K + +N LH
Sbjct: 455 GKKLD--QYKCEEYQVLVFNERVQEAQRIAAQEIKEIMEKKNNPLH 498
Score = 155 bits (391), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 148/586 (25%), Positives = 236/586 (40%), Gaps = 175/586 (29%)
Query: 133 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQ--SMVMPSALLARK 190
KE+ +T ED+ Q + E ++ A + + PT IQ S+V L ++
Sbjct: 83 KEIQIDETEEKEDVTFQ-----SLGVCEELVEACNRLKYVKPTAIQRESLVYT---LKQR 134
Query: 191 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250
DI+ AETGSGKTLAF +P+ I N L+ P
Sbjct: 135 DIIALAETGSGKTLAFALPV---IQNLLDAP----------------------------- 162
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
YAL+L+PTREL +Q+ H G +K +VGG+ Q L+K P
Sbjct: 163 -------QPFYALVLSPTRELCMQIAEHFEALGVGISLKTTVIVGGLDPMAQAIALSKKP 215
Query: 311 HILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
HI++ TPGR+ +Q F+ L +LV+DE D+++ ++ ILD +
Sbjct: 216 HIIIGTPGRILYHMQNTKGFNFKAL---KFLVLDEADKLLNMDFEKDINQILDII----- 267
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 429
P++ R TF+FSAT+T+
Sbjct: 268 --PKK--------------------------RNTFLFSATMTN----------------- 282
Query: 430 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489
+ +LQ ++K P ++++ K + TL KD YL Y + + G
Sbjct: 283 ------KVHKLQR-ASLKDPVKIEVSSKYQMVSTLVAQYAFIPAKYKDCYLVYSLNEFAG 335
Query: 490 RTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 549
T +Q LN I +T L R L
Sbjct: 336 NTSIIFVQTCLN-----------AIKLTLML-------------------------RNLG 359
Query: 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 609
F S + +H M+Q +RL +++F+ IL+ATDVA+RGLD
Sbjct: 360 F-------------------SAVTIHGQMSQVKRLGAINKFKSGEKKILVATDVASRGLD 400
Query: 610 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEE 669
IP ++ VI+Y +P ++ Y+HR GRTARA G + + ++ + K E
Sbjct: 401 IPSVDLVINYDIPTNAKEYVHRVGRTARAGRAGKAISFVTQYDVEMYLKI--------EA 452
Query: 670 EERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDP 715
+ D+ K E+ V V + ++++ Q + E+ E+ N+P
Sbjct: 453 LIGKKLDQYKCEEYQVLVFN--ERVQEAQRIAAQEIKEIMEKKNNP 496
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 1354 WDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+ AL+L+PTREL +Q+ H G +K +VGG+ Q L+K PHI++ TPG
Sbjct: 165 FYALVLSPTRELCMQIAEHFEALGVGISLKTTVIVGGLDPMAQAIALSKKPHIIIGTPG 223
>gi|148259867|ref|YP_001233994.1| DEAD/DEAH box helicase [Acidiphilium cryptum JF-5]
gi|146401548|gb|ABQ30075.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
Length = 503
Score = 201 bits (510), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 131/413 (31%), Positives = 206/413 (49%), Gaps = 72/413 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E I++AL +KG+ PT IQ +P+ L+ R D++G A+TG+GKT +F +P+L
Sbjct: 21 FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGR-DVLGCAQTGTGKTASFTLPML- 78
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-YALILAPTREL 888
++L + R ++ +LIL PTREL
Sbjct: 79 ------------------------DILSG------------SRARARMPRSLILEPTREL 102
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+QV + + GK+ + A ++GG S +Q +L + +L+ATPGRL + + G L
Sbjct: 103 ALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVDVLIATPGRLIDIFERGGLLL 162
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
++ + LVIDE DRM++ G P+++ I V++ T RQT FSAT+
Sbjct: 163 SD---VRVLVIDEADRMLDMGFIPDIERI---VSLLPTM--RQTLFFSATMA-------- 206
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES-KILCKHDEKDS 1067
P I+RL D + +PK + ++ + T+TE ++ HD++++
Sbjct: 207 ---------------PEIRRLADAF-LSNPKQITVSRPATVATTITEGLSLVATHDKREA 250
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
+ LVFCN V L + LT K S LH M Q R L+RF+
Sbjct: 251 LRRLIRTEDVQNALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGE 310
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+L+ +DVAARG+DI G+ HV ++ VP +E Y+HR GRT RA +G L L
Sbjct: 311 IRLLVCSDVAARGIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTL 363
Score = 162 bits (410), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 135/497 (27%), Positives = 214/497 (43%), Gaps = 156/497 (31%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E I++AL +KG+ PT IQ +P+ L+ R D++G A+TG+GKT +F +P+L
Sbjct: 21 FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGR-DVLGCAQTGTGKTASFTLPML- 78
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-YALILAPTREL 271
++L + R ++ +LIL PTREL
Sbjct: 79 ------------------------DILSG------------SRARARMPRSLILEPTREL 102
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+QV + + GK+ + A ++GG S +Q +L + +L+ATPGRL + + G L
Sbjct: 103 ALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVDVLIATPGRLIDIFERGGLLL 162
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
++ + LVIDE DRM++ G P+++ I V++ T
Sbjct: 163 SD---VRVLVIDEADRMLDMGFIPDIERI---VSLLPTM--------------------- 195
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
RQT FSAT+ P I+RL D + +PK
Sbjct: 196 ---------RQTLFFSATMA-----------------------PEIRRLADAF-LSNPKQ 222
Query: 452 VDLTEKIGITKTLTES-KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDL 510
+ ++ + T+TE ++ HD++++ L I RT E++Q+ L + K
Sbjct: 223 ITVSRPATVATTITEGLSLVATHDKREA-LRRLI-----RT--EDVQNALVFCNRK---- 270
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
+ ILCK LT K S
Sbjct: 271 ----------RDVDILCKS----------------------------------LTRHKFS 286
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
LH M Q R L+RF+ +L+ +DVAARG+DI G+ HV ++ VP +E Y+H
Sbjct: 287 AGMLHGDMPQSARFATLERFKAGEIRLLVCSDVAARGIDIGGLSHVFNFDVPHHAEDYVH 346
Query: 631 RSGRTARANNEGLTVVL 647
R GRT RA +G + L
Sbjct: 347 RIGRTGRAGMQGRALTL 363
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+LIL PTRELA+QV + + GK+ + A ++GG S +Q +L + +L+ATPG L
Sbjct: 93 SLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVDVLIATPGRL- 151
Query: 1416 LKRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMSK 1472
ID+ + L S ++ + D L DM I D E ++ R+ S
Sbjct: 152 ---IDIFERGGLLLSDVRVLVIDEADRML-----DMGFIPDIERIVSLLPTMRQTLFFSA 203
Query: 1473 ALVSKRKEL 1481
+ + + L
Sbjct: 204 TMAPEIRRL 212
>gi|425055862|ref|ZP_18459326.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
gi|403033019|gb|EJY44552.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
Length = 503
Score = 201 bits (510), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 140/468 (29%), Positives = 228/468 (48%), Gaps = 79/468 (16%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE +++++ + GF+ T IQ+ +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQAETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DE D M+ G +++ I+ +V RQT +FSAT+ ++KN + +K
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKN-IGVK----- 194
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFIL 1074
+KSP V + K + + + K EK D F +
Sbjct: 195 ------------------FMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDV 236
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q P T+VF + V L + L +H ++Q++R+ L F+ + IL+AT
Sbjct: 237 QTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVAT 296
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G+++ + +E+ + N
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIEN 356
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
+K++ P ++ + L ++E +E+K+++N D +L
Sbjct: 357 LTKKRMTTLRPPTEKEAF-----KGQLGAAVEQIETKLEENGLDKYLQ 399
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 117/231 (50%), Gaps = 50/231 (21%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE +++++ + GF+ T IQ+ +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQAETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKNI 388
LV+DE D M+ G +++ I+ +V RQT++ S P +KNI
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKNI 191
Score = 93.6 bits (231), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+KSP V + K + + + K EK D F +Q P T+VF + V L
Sbjct: 196 MKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L +H ++Q++R+ L F+ + IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 ARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G++V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ L++APTRELAIQ Q + G+ V+V V GG +Q+R L PHI+V T
Sbjct: 67 RHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGT 126
Query: 1411 PGAL 1414
PG +
Sbjct: 127 PGRM 130
Score = 41.6 bits (96), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA G+++ + +E+ + N +K++ P ++
Sbjct: 320 PESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAF----- 374
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAK 1325
+ L ++E +E+K+++N D +L+ A K
Sbjct: 375 KGQLGAAVEQIETKLEENGLDKYLQTADK 403
>gi|386586651|ref|YP_006083053.1| DEAD/DEAH box helicase [Streptococcus suis D12]
gi|353738797|gb|AER19805.1| DEAD/DEAH box helicase domain protein [Streptococcus suis D12]
Length = 526
Score = 201 bits (510), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 207/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E I+ A+ + GF+TP+ IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I D N+ ++ ALI+APTRELA
Sbjct: 62 KI----------DTNNQAIQ-----------------------------ALIIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLD 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN-SLN 1008
+ L++DE D M+ G +++ I++RV + RQT +FSAT+ +K +
Sbjct: 143 ---GVETLILDEADEMLNMGFLDDIETIIERV-----PESRQTLLFSATMPEPIKRIGVK 194
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
K K +K ++ Q L +K +H++ D+
Sbjct: 195 FMKEPEHVKIAAKELTNVNVDQYYLRVK------------------------EHEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + L KK
Sbjct: 350 YLAIIEELTKK 360
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E I+ A+ + GF+TP+ IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I D N+ ++ ALI+APTRELA
Sbjct: 62 KI----------DTNNQAIQ-----------------------------ALIIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLD 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ L++DE D M+ G +++ I++RV + RQT++ S PE
Sbjct: 143 ---GVETLILDEADEMLNMGFLDDIETIIERV-----PESRQTLLFSATMPE 186
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 71/125 (56%)
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
H++ D+ + P ++VF + V LT+ L + +H ++Q +RL+ +
Sbjct: 224 HEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIR 283
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
F++ +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ +
Sbjct: 284 DFKNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFV 343
Query: 649 ESDEI 653
+E+
Sbjct: 344 SPNEM 348
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++ +E+ I + D L +M + D E +I+ SR+ L S
Sbjct: 131 ---LDLIKRKALKLDGVETLI-LDEADEML-----NMGFLDDIETIIERVPESRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|420451587|ref|ZP_14950439.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-6]
gi|393070445|gb|EJB71235.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-6]
Length = 491
Score = 201 bits (510), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 204/430 (47%), Gaps = 72/430 (16%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 897 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHK---FVPKV 164
Query: 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+V+DE+D M++ G +++ I D + Q +FSAT+
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEP-------------- 205
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
IKRL D + KI I ++ +H+ + + Q
Sbjct: 206 ---------IKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEVIMRLLDTQA 256
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P +++VF + L Q L LH M+QR R ++ F+ + +L+ATDV
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+ + L+ E ++M +
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 1197 EKKVDLPDFP 1206
+ +++L + P
Sbjct: 377 DSEIELFEIP 386
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E++++++Y+ GF +P+ IQ +P+ L R D++ A+TG+GKT AF +PI +N L+
Sbjct: 29 ESVLKSVYEAGFTSPSPIQEKAIPAVLQGR-DVIAQAQTGTGKTAAFALPI----INNLK 83
Query: 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
N + + AL++ PTRELA+Q+ + I
Sbjct: 84 N------------------------------------NHTIEALVITPTRELAMQISDEI 107
Query: 280 LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+T K CV GG S +KQ + K P +++ATPGRL + ++ H +
Sbjct: 108 FKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIH---KFVPKV 164
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE-LKNILDRV 392
+V+DE+D M++ G +++ I D + Q ++ S PE +K + D++
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYL-----PSEAQILLFSATMPEPIKRLADKI 213
Score = 98.2 bits (243), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 6/148 (4%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
++ +H+ + + Q P +++VF + L Q L LH M+QR R
Sbjct: 238 VINEHERAEVIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRR 297
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
++ F+ + +L+ATDVA+RGLDI G+ HV +YH+P +E YIHR GRT RA +G+
Sbjct: 298 ASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 645 VVLIESDEIPLKTK--FNLQEEENNEEE 670
+ L+ PL+ K +Q+E ++E E
Sbjct: 358 ITLV----TPLEYKELLRMQKEIDSEIE 381
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++ +AL++ PTRELA+Q+ + I GK+T K CV GG S +KQ + K P +++ATP
Sbjct: 86 HTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145
Query: 1412 GAL 1414
G L
Sbjct: 146 GRL 148
>gi|422825892|ref|ZP_16874071.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
Length = 523
Score = 201 bits (510), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|422849128|ref|ZP_16895804.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
Length = 523
Score = 201 bits (510), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L +I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LN---RIETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L +I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LN---RIETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 67.0 bits (162), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWLEKAAKD---MDIIIDDENLIQPKANSRENALMSK 1472
+DL K +K NR + + A + M + D E++I R+ L S
Sbjct: 131 ---LDLIK-----RKALKLNRIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSA 182
Query: 1473 AL 1474
+
Sbjct: 183 TM 184
>gi|324503749|gb|ADY41623.1| ATP-dependent RNA helicase DDX54 [Ascaris suum]
Length = 799
Score = 201 bits (510), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 134/440 (30%), Positives = 216/440 (49%), Gaps = 76/440 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + + +A+ +KG++ PT IQ +P ++ KD+V + TGSGKT AF +P+L
Sbjct: 40 WQALGLDHAVFKAIEKKGYRQPTPIQRKAIP-LIIDGKDVVAMSRTGSGKTAAFVVPML- 97
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++L+ N T AL++APTRELA
Sbjct: 98 ---------------------------QKLKRREVNGTR----------ALLIAPTRELA 120
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q + G++T ++ A +VGG S E+Q +++ P I++ATPGRL I + LT
Sbjct: 121 LQTFKFTKELGRFTGLRCAALVGGDSIEEQFGAIHEKPDIIIATPGRLLHLIIEMNLRLT 180
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ YLV DE DR+ E G +L IL R+ RQT +FSATL L +
Sbjct: 181 T---VQYLVFDEADRLFEMGFSEQLHEILKRLP-----DNRQTLLFSATLPKMLVDF--- 229
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
K DP + RL D+ EKI + L+ + C+ +K S
Sbjct: 230 -------AKAGLTDPVLVRL------------DVDEKI--SDRLSMIFLTCRTADKISAF 268
Query: 1070 YYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
Y + + + T+VFC ++ V+ L + + L++ ++ R N++RFR +
Sbjct: 269 LYLVRLAIANNEMTIVFCATMKHVEYLAAVAQRAAIDCVVLYSQLDAAARKINIERFRSK 328
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+L+ TDVAARG+DIP +++ I++H P +++++HR GR ARA G + LI +DE+
Sbjct: 329 QCLLLIVTDVAARGVDIPLLDNAINFHFPPKAKLFVHRVGRVARAGKSGKSYSLISADEL 388
Query: 1187 PLYIKMFNSLEKKVDL--PD 1204
P +F L + ++ PD
Sbjct: 389 PYLADLFLFLGRPLNFAKPD 408
Score = 116 bits (291), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 47/233 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + + +A+ +KG++ PT IQ +P ++ KD+V + TGSGKT AF +P+L
Sbjct: 40 WQALGLDHAVFKAIEKKGYRQPTPIQRKAIP-LIIDGKDVVAMSRTGSGKTAAFVVPML- 97
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++L+ N T AL++APTRELA
Sbjct: 98 ---------------------------QKLKRREVNGTR----------ALLIAPTRELA 120
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q + G++T ++ A +VGG S E+Q +++ P I++ATPGRL I + LT
Sbjct: 121 LQTFKFTKELGRFTGLRCAALVGGDSIEEQFGAIHEKPDIIIATPGRLLHLIIEMNLRLT 180
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385
+ YLV DE DR+ E G +L IL R+ RQT++ S P++
Sbjct: 181 ---TVQYLVFDEADRLFEMGFSEQLHEILKRL-----PDNRQTLLFSATLPKM 225
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLL 564
+D+ EKI + L+ + C+ +K S Y + + + T+VFC ++ V+ L +
Sbjct: 242 LDVDEKI--SDRLSMIFLTCRTADKISAFLYLVRLAIANNEMTIVFCATMKHVEYLAAVA 299
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+ L++ ++ R N++RFR + +L+ TDVAARG+DIP +++ I++H P
Sbjct: 300 QRAAIDCVVLYSQLDAAARKINIERFRSKQCLLLIVTDVAARGVDIPLLDNAINFHFPPK 359
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEIP 654
+++++HR GR ARA G + LI +DE+P
Sbjct: 360 AKLFVHRVGRVARAGKSGKSYSLISADELP 389
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q + G++T ++ A +VGG S E+Q +++ P I++ATPG L
Sbjct: 110 ALLIAPTRELALQTFKFTKELGRFTGLRCAALVGGDSIEEQFGAIHEKPDIIIATPGRL 168
>gi|424762589|ref|ZP_18190093.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1337RF]
gi|431757804|ref|ZP_19546433.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
gi|402424479|gb|EJV56656.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
TX1337RF]
gi|430618309|gb|ELB55156.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
Length = 503
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 139/468 (29%), Positives = 228/468 (48%), Gaps = 79/468 (16%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE +++++ + GF+ T IQ+ +P AL+ KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQAETIPLALVG-KDVIGQAQTGTGKTAAFGLPML------- 60
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DE D M+ G +++ I+ +V + RQT +FSAT+ ++KN + +K
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PEQRQTLLFSATMPPAIKN-IGVK----- 194
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFIL 1074
+KSP V + K + + + K EK D F +
Sbjct: 195 ------------------FMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDV 236
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q P T+VF + V L + L +H ++Q++R+ L F+ + IL+AT
Sbjct: 237 QTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVAT 296
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G+++ + +E+ + N
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIEN 356
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
+K++ P ++ + L ++E +E+K+ +N D +L
Sbjct: 357 LTKKRMTTLRPPTEKEAF-----KGQLGAAVEQIETKLAENGLDKYLQ 399
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 50/231 (21%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE +++++ + GF+ T IQ+ +P AL+ KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQAETIPLALVG-KDVIGQAQTGTGKTAAFGLPML------- 60
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKNI 388
LV+DE D M+ G +++ I+ +V + RQT++ S P +KNI
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PEQRQTLLFSATMPPAIKNI 191
Score = 93.2 bits (230), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+KSP V + K + + + K EK D F +Q P T+VF + V L
Sbjct: 196 MKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L +H ++Q++R+ L F+ + IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 ARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G++V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ L++APTRELAIQ Q + G+ V+V V GG +Q+R L PHI+V T
Sbjct: 67 RHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGT 126
Query: 1411 PGAL 1414
PG +
Sbjct: 127 PGRM 130
Score = 41.2 bits (95), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA G+++ + +E+ + N +K++ P ++
Sbjct: 320 PESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAF----- 374
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAK 1325
+ L ++E +E+K+ +N D +L+ A K
Sbjct: 375 KGQLGAAVEQIETKLAENGLDKYLQTADK 403
>gi|343525265|ref|ZP_08762220.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|343395535|gb|EGV08073.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
Length = 514
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 137/433 (31%), Positives = 213/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIDKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I E+PT + ALI+APTRE
Sbjct: 60 LEKI--DTEDPT-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + L++DE D M+ G +++ I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNH---VETLILDEADEMLNMGFLEDIEAIISRV-----PEDRQTLLFSATMPDAIKQ-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ SL KK
Sbjct: 349 G-YLQIIESLTKK 360
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 112/234 (47%), Gaps = 51/234 (21%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIDKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I E+PT + ALI+APTRE
Sbjct: 60 LEKI--DTEDPT-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
L + L++DE D M+ G +++ I+ RV + RQT++ S P+
Sbjct: 141 LNH---VETLILDEADEMLNMGFLEDIEAIISRV-----PEDRQTLLFSATMPD 186
Score = 97.8 bits (242), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|422876910|ref|ZP_16923380.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
Length = 523
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|422855974|ref|ZP_16902632.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
Length = 523
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|422853805|ref|ZP_16900469.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
gi|422863055|ref|ZP_16909687.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
gi|422883664|ref|ZP_16930113.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
Length = 523
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|407475055|ref|YP_006789455.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407051563|gb|AFS79608.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 526
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 127/419 (30%), Positives = 206/419 (49%), Gaps = 75/419 (17%)
Query: 771 VKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
VKF + E I++A+ + GF+ P+KIQ +P +L D++G A+TG+GKTLAFG P+
Sbjct: 4 VKFKDLGLNEDILKAINELGFEEPSKIQKEAIP-VVLEGFDVIGQAQTGTGKTLAFGAPV 62
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
+NK +KK+ K+ ++++ PTRE
Sbjct: 63 ----INK-----------------------------------IKKSTGKISSIVITPTRE 83
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LAIQV + I GKYT V+ V GG ++Q+R + + +LV TPGR+ + I+
Sbjct: 84 LAIQVNDEISRIGKYTRVRTLPVYGGKPIDRQIRAIKQGVDVLVGTPGRVLDLIRR---R 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
+ +L ++N+LV+DE D M++ G +++ I+ + RQT +FSAT+
Sbjct: 141 VVDLSRVNFLVLDEADEMLDMGFIDDIEEII-----RNCPEDRQTMLFSATMP------- 188
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
P IKRL + K + + + T+++ K + + +
Sbjct: 189 ----------------PQIKRLAKSYMKEDMKHISIVKNTITVSTVSQYYFEIKQNNRFE 232
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
S P ++FC + V L + L + + +H M Q R+ L +F++
Sbjct: 233 SLCRILDYDEPSSAIIFCKTKKGVDELVEGLQVRGYNVEGMHGDMTQDHRMNTLRKFKEG 292
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
N L+ATDVAARG+DI I HV +Y +P+ S+ Y+HR GRT RAN +G L+ + E
Sbjct: 293 NLEFLVATDVAARGIDIESITHVFNYELPQDSDSYVHRIGRTGRANRQGTAYTLVTARE 351
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 139/504 (27%), Positives = 218/504 (43%), Gaps = 161/504 (31%)
Query: 154 VKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
VKF + E I++A+ + GF+ P+KIQ +P +L D++G A+TG+GKTLAFG P+
Sbjct: 4 VKFKDLGLNEDILKAINELGFEEPSKIQKEAIP-VVLEGFDVIGQAQTGTGKTLAFGAPV 62
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
+NK +KK+ K+ ++++ PTRE
Sbjct: 63 ----INK-----------------------------------IKKSTGKISSIVITPTRE 83
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LAIQV + I GKYT V+ V GG ++Q+R + + +LV TPGR+ + I+
Sbjct: 84 LAIQVNDEISRIGKYTRVRTLPVYGGKPIDRQIRAIKQGVDVLVGTPGRVLDLIRR---R 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
+ +L ++N+LV+DE D M++ G +++ I+
Sbjct: 141 VVDLSRVNFLVLDEADE----------------------------MLDMGFIDDIEEII- 171
Query: 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450
+ RQT +FSAT+ P IKRL KS
Sbjct: 172 ----RNCPEDRQTMLFSATMP-----------------------PQIKRLA-----KSYM 199
Query: 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR--TLCEEIQDLLNIKSPKIV 508
D+ + T+T S + YYF ++ R +LC +I+
Sbjct: 200 KEDMKHISIVKNTITVSTV---------SQYYFEIKQNNRFESLC------------RIL 238
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 568
D +DE P ++FC + V L + L +
Sbjct: 239 D-------------------YDE------------PSSAIIFCKTKKGVDELVEGLQVRG 267
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
+ +H M Q R+ L +F++ N L+ATDVAARG+DI I HV +Y +P+ S+ Y
Sbjct: 268 YNVEGMHGDMTQDHRMNTLRKFKEGNLEFLVATDVAARGIDIESITHVFNYELPQDSDSY 327
Query: 629 IHRSGRTARANNEGLTVVLIESDE 652
+HR GRT RAN +G L+ + E
Sbjct: 328 VHRIGRTGRANRQGTAYTLVTARE 351
Score = 60.1 bits (144), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG-AL 1414
++++ PTRELAIQV + I GKYT V+ V GG ++Q+R + + +LV TPG L
Sbjct: 75 SIVITPTRELAIQVNDEISRIGKYTRVRTLPVYGGKPIDRQIRAIKQGVDVLVGTPGRVL 134
Query: 1415 SLKR---IDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
L R +DL++ + +L + D L DM I D E +I+ R+ L S
Sbjct: 135 DLIRRRVVDLSR-VNFLVL----DEADEML-----DMGFIDDIEEIIRNCPEDRQTMLFS 184
Query: 1472 KALVSKRKEL 1481
+ + K L
Sbjct: 185 ATMPPQIKRL 194
>gi|375011758|ref|YP_004988746.1| DNA/RNA helicase [Owenweeksia hongkongensis DSM 17368]
gi|359347682|gb|AEV32101.1| DNA/RNA helicase, superfamily II [Owenweeksia hongkongensis DSM
17368]
Length = 422
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 214/414 (51%), Gaps = 67/414 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
NI E II+AL ++ ++ PT IQ+ +P LL R D++ +A+TG+GKT AF IPIL +
Sbjct: 6 LNIIEPIIKALKEENYEQPTPIQAKSIP-LLLDRNDMLASAQTGTGKTAAFAIPILQHLF 64
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N D +S + +++ ALIL PTRELAIQ+
Sbjct: 65 N--------DRKESNHQ-------------------------HRVNALILTPTRELAIQI 91
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
GK+T ++ + GG++ Q+ L K +LVATPGRL + + G+ +L +
Sbjct: 92 GESFTTYGKHTGLRNTVIFGGVNQRSQVDALRKGMDVLVATPGRLLDLMDQGYVNLKD-- 149
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
I Y V+DE DRM++ G +++ ++ ++ RQ+ FSAT+ KN + L
Sbjct: 150 -IKYFVLDEADRMLDMGFIHDIRKVIAKLPAK-----RQSLFFSATMP---KNIVEL--- 197
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
S+K+ + +PK V+++ +T+ + D K L++
Sbjct: 198 ---SRKI---------------LTNPKKVEVSPVSSTAETIQQYLYYTNKDLKKDLLFHI 239
Query: 1073 IL-QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ Q + L+F + R+ + L K +H + +Q QR K L++F+D+ +L
Sbjct: 240 LKDQSMDQVLIFAKTKHGADRVVRNLEKQKIKSAAIHGNKSQNQRQKALNQFKDKQIRVL 299
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+ATD+AARG+DI ++HVI+Y +P +E Y+HR GR+ RA EG+ + + E +E
Sbjct: 300 VATDIAARGIDIDKLQHVINYDIPNIAETYVHRIGRSGRAGEEGMAISMCEPEE 353
Score = 119 bits (299), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 123/235 (52%), Gaps = 44/235 (18%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
NI E II+AL ++ ++ PT IQ+ +P LL R D++ +A+TG+GKT AF IPIL +
Sbjct: 6 LNIIEPIIKALKEENYEQPTPIQAKSIP-LLLDRNDMLASAQTGTGKTAAFAIPILQHLF 64
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N D +S + +++ ALIL PTRELAIQ+
Sbjct: 65 N--------DRKESNHQ-------------------------HRVNALILTPTRELAIQI 91
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
GK+T ++ + GG++ Q+ L K +LVATPGRL + + G+ +L +
Sbjct: 92 GESFTTYGKHTGLRNTVIFGGVNQRSQVDALRKGMDVLVATPGRLLDLMDQGYVNLKD-- 149
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
I Y V+DE DRM++ G +++ ++ ++ RQ++ S P KNI++
Sbjct: 150 -IKYFVLDEADRMLDMGFIHDIRKVIAKLPAK-----RQSLFFSATMP--KNIVE 196
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPGRTLVFCNSISSVKRL 560
+ +PK V+++ +T+ + D K L++ + Q + L+F + R+
Sbjct: 202 LTNPKKVEVSPVSSTAETIQQYLYYTNKDLKKDLLFHILKDQSMDQVLIFAKTKHGADRV 261
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L K +H + +Q QR K L++F+D+ +L+ATD+AARG+DI ++HVI+Y
Sbjct: 262 VRNLEKQKIKSAAIHGNKSQNQRQKALNQFKDKQIRVLVATDIAARGIDIDKLQHVINYD 321
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+P +E Y+HR GR+ RA EG+ + + E +E
Sbjct: 322 IPNIAETYVHRIGRSGRAGEEGMAISMCEPEE 353
Score = 57.0 bits (136), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 1349 NLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 1408
N ++ +ALIL PTRELAIQ+ GK+T ++ + GG++ Q+ L K +LV
Sbjct: 71 NHQHRVNALILTPTRELAIQIGESFTTYGKHTGLRNTVIFGGVNQRSQVDALRKGMDVLV 130
Query: 1409 ATPGAL 1414
ATPG L
Sbjct: 131 ATPGRL 136
>gi|422821668|ref|ZP_16869861.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
gi|422846217|ref|ZP_16892900.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
Length = 523
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 137/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDA----- 187
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
IKR+ + +K P+ V + K T+ + + I K +EK D
Sbjct: 188 ------------------IKRI-GVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
Length = 523
Score = 200 bits (509), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEVDKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 H---VETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K PK V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPKHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 124/262 (47%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSADLLAEVDKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 H---VETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P+ + + LT L
Sbjct: 192 GVQFMKEPKHVKIAAKELTTEL 213
Score = 98.2 bits (243), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K PK V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPKHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLQHVETLI-LDEADEML-----NMGFLEDIEAIISRVPENRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
Length = 523
Score = 200 bits (509), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.4 bits (241), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|71999644|ref|NP_741348.2| Protein Y94H6A.5, isoform a [Caenorhabditis elegans]
gi|351051383|emb|CCD74205.1| Protein Y94H6A.5, isoform a [Caenorhabditis elegans]
Length = 825
Score = 200 bits (509), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 141/482 (29%), Positives = 231/482 (47%), Gaps = 99/482 (20%)
Query: 757 TSNNEDMFVQM-----------AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
S++E+ F Q+ W + + ++ +A+ +KGF PT IQ +P ++
Sbjct: 2 ASDDEEDFTQLQINQNRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIP-CIMD 60
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
KD+V + TGSGKT AF IP+L KL+
Sbjct: 61 GKDVVAMSRTGSGKTAAFVIPML----QKLK----------------------------- 87
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
++ + AL+++PTRELA+Q + + G++T ++ AC+VGG E+Q +++
Sbjct: 88 -----RRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHE 142
Query: 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
P IL+ATPGRL I L+ + Y+V DE DR+ E G +L L R+
Sbjct: 143 NPDILLATPGRLLHVIVEMDLRLS---YVQYVVFDEADRLFEMGFQDQLTETLKRI---- 195
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 1045
+ RQT +FSATL L + K DP + RL D+ E
Sbjct: 196 -PESRQTLLFSATLPKMLVDFA----------KAGLTDPMLVRL------------DVDE 232
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGR--------TLVFCNSISSVKRLTQLL 1097
K+ + L+ +C+ DEK F L H R T+VFC ++ V+ + +L
Sbjct: 233 KV--SDKLSMVFCMCRPDEK-----LFALLHLCRRMDRENKQTVVFCATMKHVEYVVGIL 285
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
+++ ++ R N+ +F ++ N+IL+ TDVAARG+DIP ++ VI+ H P
Sbjct: 286 HRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPK 345
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV----DLPDFPIDESVLS 1213
+++++HR GR ARA G + LI +DE+P +F L K + D ++ DE+++
Sbjct: 346 AKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLFMFLGKPINFASDKSEYKEDETLIG 405
Query: 1214 LI 1215
+
Sbjct: 406 RV 407
Score = 114 bits (285), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 58/257 (22%)
Query: 140 TSNNEDMFVQM-----------AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
S++E+ F Q+ W + + ++ +A+ +KGF PT IQ +P ++
Sbjct: 2 ASDDEEDFTQLQINQNRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIP-CIMD 60
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
KD+V + TGSGKT AF IP+L KL+
Sbjct: 61 GKDVVAMSRTGSGKTAAFVIPML----QKLK----------------------------- 87
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
++ + AL+++PTRELA+Q + + G++T ++ AC+VGG E+Q +++
Sbjct: 88 -----RRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHE 142
Query: 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
P IL+ATPGRL I L+ + Y+V DE DR+ E G +L L R+
Sbjct: 143 NPDILLATPGRLLHVIVEMDLRLS---YVQYVVFDEADRLFEMGFQDQLTETLKRI---- 195
Query: 369 TSQPRQTMIESGHFPEL 385
+ RQT++ S P++
Sbjct: 196 -PESRQTLLFSATLPKM 211
Score = 93.6 bits (231), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR--------TLVFCN 552
+ P +V L ++ L+ +C+ DEK F L H R T+VFC
Sbjct: 219 GLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEK-----LFALLHLCRRMDRENKQTVVFCA 273
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
++ V+ + +L +++ ++ R N+ +F ++ N+IL+ TDVAARG+DIP
Sbjct: 274 TMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPL 333
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKT 657
++ VI+ H P +++++HR GR ARA G + LI +DE+P T
Sbjct: 334 LDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLT 378
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+++PTRELA+Q + + G++T ++ AC+VGG E+Q +++ P IL+ATPG L
Sbjct: 96 ALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRL 154
>gi|424788171|ref|ZP_18214930.1| helicase conserved C-terminal domain protein [Streptococcus
intermedius BA1]
gi|422112935|gb|EKU16692.1| helicase conserved C-terminal domain protein [Streptococcus
intermedius BA1]
Length = 514
Score = 200 bits (509), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +F++ ++ + + GF + IQ +P A+ KD++G A+TG+GKT AFG P L
Sbjct: 3 FNEFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEG-KDVIGQAQTGTGKTAAFGFPTLE 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I ENP F++ AL++APTRELA
Sbjct: 62 KI--NTENP------------------------------FIQ-------ALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ L++DE D M+ G +++ I+ RV + RQT +FSAT+ ++K
Sbjct: 143 H---VEILILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDAIKRI--- 191
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
+K ++D P V + K T+ + + I K +EK D+
Sbjct: 192 ---------------GVKFMKD------PTHVKIAAKELTTELVDQYYIRVKENEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPDLSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ SL KK
Sbjct: 350 YLQIIESLTKK 360
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +F++ ++ + + GF + IQ +P A+ KD++G A+TG+GKT AFG P L
Sbjct: 3 FNEFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEG-KDVIGQAQTGTGKTAAFGFPTLE 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I ENP F++ AL++APTRELA
Sbjct: 62 KI--NTENP------------------------------FIQ-------ALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 H---VEILILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVKFMKDPTHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKDPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPDLSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|422865943|ref|ZP_16912568.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
Length = 523
Score = 200 bits (509), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEKTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GIK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEKTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGIKFMKEPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|242015175|ref|XP_002428249.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
corporis]
gi|212512810|gb|EEB15511.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
corporis]
Length = 723
Score = 200 bits (509), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 138/434 (31%), Positives = 216/434 (49%), Gaps = 72/434 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F+ P +++ + ++G+K PT IQ +P L R D+V A TGSGKT F +P+ ++
Sbjct: 34 FSFP--VLKGIQKRGYKIPTPIQRKSIPLILQGR-DVVAMARTGSGKTACFLLPMFEKLI 90
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
NK K+R + ALIL+PTRELA+Q
Sbjct: 91 NK-----------------------------------TPKSRLGVRALILSPTRELALQT 115
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
I + GK+T +K ++GG S ++Q +++ P I+VATPGR LT
Sbjct: 116 VKFIKELGKFTKLKALAILGGDSMDQQFGAIHENPDIIVATPGRFLHICVEMELKLTS-- 173
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ Y+V DE DR+ E G +LK ILDR+ ++ RQT +FSATL L +
Sbjct: 174 -VEYVVFDEADRLFEMGFGEQLKEILDRLGVS-----RQTVLFSATLPKLLVDF------ 221
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
K +P + RL + K P+++DL KHDEK + L
Sbjct: 222 ----AKAGLVNPVLLRLD--VETKIPEMLDLVY------------FSVKHDEKLAALLCL 263
Query: 1073 ILQHP--GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ P +TL+F + V+ + ++L S +++ ++ R N +F+++ S+
Sbjct: 264 LNLLPKNTQTLIFVATKHHVEYIHKILEKANISSSYIYSDLDPTARKINAAKFQNKVCSV 323
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L+ TDVAARG+DIP +++VI+YH P ++++HR GR ARA G L+ S+E P I
Sbjct: 324 LIVTDVAARGVDIPQLDYVINYHFPAKPKLFVHRVGRCARAGRTGTAFSLVCSEEFPYII 383
Query: 1191 KMFNSLEKKVDLPD 1204
+ L KK++L D
Sbjct: 384 DLHLFLGKKINLLD 397
Score = 120 bits (301), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 46/230 (20%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F+ P +++ + ++G+K PT IQ +P L R D+V A TGSGKT F +P+ ++
Sbjct: 34 FSFP--VLKGIQKRGYKIPTPIQRKSIPLILQGR-DVVAMARTGSGKTACFLLPMFEKLI 90
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
NK K+R + ALIL+PTRELA+Q
Sbjct: 91 NK-----------------------------------TPKSRLGVRALILSPTRELALQT 115
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
I + GK+T +K ++GG S ++Q +++ P I+VATPGR LT
Sbjct: 116 VKFIKELGKFTKLKALAILGGDSMDQQFGAIHENPDIIVATPGRFLHICVEMELKLTS-- 173
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385
+ Y+V DE DR+ E G +LK ILDR+ ++ RQT++ S P+L
Sbjct: 174 -VEYVVFDEADRLFEMGFGEQLKEILDRLGVS-----RQTVLFSATLPKL 217
Score = 85.9 bits (211), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 528 KHDEKDSYLYYFILQHP--GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
KHDEK + L + P +TL+F + V+ + ++L S +++ ++ R
Sbjct: 252 KHDEKLAALLCLLNLLPKNTQTLIFVATKHHVEYIHKILEKANISSSYIYSDLDPTARKI 311
Query: 586 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
N +F+++ S+L+ TDVAARG+DIP +++VI+YH P ++++HR GR ARA G
Sbjct: 312 NAAKFQNKVCSVLIVTDVAARGVDIPQLDYVINYHFPAKPKLFVHRVGRCARAGRTGTAF 371
Query: 646 VLIESDEIP 654
L+ S+E P
Sbjct: 372 SLVCSEEFP 380
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R ALIL+PTRELA+Q I + GK+T +K ++GG S ++Q +++ P I+VAT
Sbjct: 97 RLGVRALILSPTRELALQTVKFIKELGKFTKLKALAILGGDSMDQQFGAIHENPDIIVAT 156
Query: 1411 PG 1412
PG
Sbjct: 157 PG 158
>gi|422860597|ref|ZP_16907241.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
Length = 523
Score = 200 bits (509), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 528
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 141/461 (30%), Positives = 231/461 (50%), Gaps = 81/461 (17%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + +FNI ++++RA+ + GF+ P+ IQ V+P+ +L D++G A+TG+GKT AFGIP
Sbjct: 1 MMTFEEFNISKSLMRAIKEMGFEAPSPIQEKVIPT-ILEGNDLIGQAQTGTGKTAAFGIP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL E +K+T+N + A+IL PTR
Sbjct: 60 IL---------------------------------------EKLKRTKN-VQAIILTPTR 79
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELAIQV I K+ V+ V GG S +Q++ L + I+V TPGR+ + +
Sbjct: 80 ELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIKQLKRGVDIVVGTPGRVLDHVNRKTL 139
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
L+ KI+ V+DE D M++ G +++ I+ +S+ RQT +FSAT+ ++
Sbjct: 140 DLS---KIHTFVLDEADEMLDMGFIEDIEKIIQV-----SSEERQTLLFSATMPPPIRKL 191
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI--LCKH-D 1063
N + +SK + + +P I + K+ L ++K+ LC+ D
Sbjct: 192 SNKYMNSPEQVTISKSE-----------VTAPSINQVYYKV-----LEKNKLDSLCRLID 235
Query: 1064 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
+++ L ++FC + V L + L LH + Q QR + +F
Sbjct: 236 SENTDL----------GIIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKF 285
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
RD + L+ATDVAARG+D+ + HV++Y +P+ E Y+HR GRT RA EG+ L L+
Sbjct: 286 RDSSIDFLIATDVAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTP 345
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
E+ + N ++ K+ + P SV +I+K+ D+ KS
Sbjct: 346 REMKHLRSIENEIKMKIPSQNLP---SVEEVIEKQQDVWKS 383
Score = 117 bits (292), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 49/234 (20%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + +FNI ++++RA+ + GF+ P+ IQ V+P+ +L D++G A+TG+GKT AFGIP
Sbjct: 1 MMTFEEFNISKSLMRAIKEMGFEAPSPIQEKVIPT-ILEGNDLIGQAQTGTGKTAAFGIP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL E +K+T+N + A+IL PTR
Sbjct: 60 IL---------------------------------------EKLKRTKN-VQAIILTPTR 79
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELAIQV I K+ V+ V GG S +Q++ L + I+V TPGR+ + +
Sbjct: 80 ELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIKQLKRGVDIVVGTPGRVLDHVNRKTL 139
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
L+ KI+ V+DE D M++ G +++ I+ +S+ RQT++ S P
Sbjct: 140 DLS---KIHTFVLDEADEMLDMGFIEDIEKIIQV-----SSEERQTLLFSATMP 185
Score = 91.7 bits (226), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%)
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC + V L + L LH + Q QR + +FRD + L+ATDVAARG
Sbjct: 243 IIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFLIATDVAARG 302
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+D+ + HV++Y +P+ E Y+HR GRT RA EG+ + L+ E+
Sbjct: 303 IDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREM 348
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA-- 1413
A+IL PTRELAIQV I K+ V+ V GG S +Q++ L + I+V TPG
Sbjct: 72 AIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIKQLKRGVDIVVGTPGRVL 131
Query: 1414 --LSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
++ K +DL+K ++ + D L DM I D E +IQ + R+ L S
Sbjct: 132 DHVNRKTLDLSKIHTFV-----LDEADEML-----DMGFIEDIEKIIQVSSEERQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
Score = 41.2 bits (95), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA EG+ L L+ E+ + N ++ K+ + P SV +I+K
Sbjct: 320 PESYVHRIGRTGRAGREGIALTLVTPREMKHLRSIENEIKMKIPSQNLP---SVEEVIEK 376
Query: 1297 RIDLAKS 1303
+ D+ KS
Sbjct: 377 QQDVWKS 383
>gi|71999646|ref|NP_741347.2| Protein Y94H6A.5, isoform b [Caenorhabditis elegans]
gi|351051384|emb|CCD74206.1| Protein Y94H6A.5, isoform b [Caenorhabditis elegans]
Length = 871
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 138/465 (29%), Positives = 223/465 (47%), Gaps = 95/465 (20%)
Query: 757 TSNNEDMFVQM-----------AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
S++E+ F Q+ W + + ++ +A+ +KGF PT IQ +P ++
Sbjct: 2 ASDDEEDFTQLQINQNRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIP-CIMD 60
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
KD+V + TGSGKT AF IP+L KL+
Sbjct: 61 GKDVVAMSRTGSGKTAAFVIPML----QKLK----------------------------- 87
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
++ + AL+++PTRELA+Q + + G++T ++ AC+VGG E+Q +++
Sbjct: 88 -----RRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHE 142
Query: 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
P IL+ATPGRL I L+ + Y+V DE DR+ E G +L L R+
Sbjct: 143 NPDILLATPGRLLHVIVEMDLRLS---YVQYVVFDEADRLFEMGFQDQLTETLKRI---- 195
Query: 986 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 1045
+ RQT +FSATL L + K DP + RL D+ E
Sbjct: 196 -PESRQTLLFSATLPKMLVDF----------AKAGLTDPMLVRL------------DVDE 232
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGR--------TLVFCNSISSVKRLTQLL 1097
K+ + L+ +C+ DEK F L H R T+VFC ++ V+ + +L
Sbjct: 233 KV--SDKLSMVFCMCRPDEK-----LFALLHLCRRMDRENKQTVVFCATMKHVEYVVGIL 285
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
+++ ++ R N+ +F ++ N+IL+ TDVAARG+DIP ++ VI+ H P
Sbjct: 286 HRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPK 345
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
+++++HR GR ARA G + LI +DE+P +F L K ++
Sbjct: 346 AKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLFMFLGKPINF 390
Score = 113 bits (283), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 58/257 (22%)
Query: 140 TSNNEDMFVQM-----------AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
S++E+ F Q+ W + + ++ +A+ +KGF PT IQ +P ++
Sbjct: 2 ASDDEEDFTQLQINQNRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIP-CIMD 60
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
KD+V + TGSGKT AF IP+L KL+
Sbjct: 61 GKDVVAMSRTGSGKTAAFVIPML----QKLK----------------------------- 87
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
++ + AL+++PTRELA+Q + + G++T ++ AC+VGG E+Q +++
Sbjct: 88 -----RRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHE 142
Query: 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
P IL+ATPGRL I L+ + Y+V DE DR+ E G +L L R+
Sbjct: 143 NPDILLATPGRLLHVIVEMDLRLS---YVQYVVFDEADRLFEMGFQDQLTETLKRI---- 195
Query: 369 TSQPRQTMIESGHFPEL 385
+ RQT++ S P++
Sbjct: 196 -PESRQTLLFSATLPKM 211
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR--------TLVFCN 552
+ P +V L ++ L+ +C+ DEK F L H R T+VFC
Sbjct: 219 GLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEK-----LFALLHLCRRMDRENKQTVVFCA 273
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
++ V+ + +L +++ ++ R N+ +F ++ N+IL+ TDVAARG+DIP
Sbjct: 274 TMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPL 333
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKT 657
++ VI+ H P +++++HR GR ARA G + LI +DE+P T
Sbjct: 334 LDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLT 378
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 49/74 (66%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+++PTRELA+Q + + G++T ++ AC+VGG E+Q +++ P IL+ATPG L
Sbjct: 96 ALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRLL 155
Query: 1416 LKRIDLAKSIEYLE 1429
+++ + Y++
Sbjct: 156 HVIVEMDLRLSYVQ 169
>gi|321464143|gb|EFX75153.1| hypothetical protein DAPPUDRAFT_226459 [Daphnia pulex]
Length = 447
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 139/440 (31%), Positives = 216/440 (49%), Gaps = 89/440 (20%)
Query: 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 850
PT IQ +P AL R D++G AETGSGKT AF +P+L + L NP
Sbjct: 48 PTPIQREAIPLALQGR-DVIGLAETGSGKTGAFTLPMLHSL---LSNP------------ 91
Query: 851 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV 910
+L+ LIL PTRELA Q+ I G VK A +
Sbjct: 92 ------------------------QRLFGLILTPTRELAFQISEQIEALGSSIGVKCAVI 127
Query: 911 VGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGH 970
VGG+ Q +L K PHI++ATPGRL + H T+ + + L E D++++S
Sbjct: 128 VGGIDMISQSLMLAKKPHIVIATPGRLVD-----HLENTKGFNLKSLKYLEVDKILKS-- 180
Query: 971 FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030
+ R+T +FSAT+T SK +K+ +
Sbjct: 181 ---------------IPRERRTLLFSATMT-------------SKVQKLQRA-------- 204
Query: 1031 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISS 1089
++ +P V ++ K L + + KD YL + + + G + +VFC++ SS
Sbjct: 205 ---SLVNPVRVQISSKYQTVDKLLQYYVFIPLKMKDVYLVHLLNEAAGHSVMVFCSTCSS 261
Query: 1090 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 1149
R + LL L S +PLH M Q +RL L++F+ +N +LLATDVA+RGLDIP ++ V
Sbjct: 262 TLRTSLLLRALGISAVPLHGQMTQNKRLAALNKFKARNRGVLLATDVASRGLDIPHVDWV 321
Query: 1150 IHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE 1209
I+Y +P S+ YIHR GRTARA G + + ++ LY ++ + L K+ LP + ++E
Sbjct: 322 INYDIPTHSKDYIHRVGRTARAGRSGKAISFVTQYDVELYQRIEHLLGKQ--LPLYGLEE 379
Query: 1210 SVLSLIKKRIDLAKSIEYLE 1229
+ +++R+ A+ + ++
Sbjct: 380 GDVMSLQERVAEAQRVAKMD 399
Score = 117 bits (292), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 15/208 (7%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ ++Q L ++ +P V ++ K L + + KD YL + + + G +
Sbjct: 193 TMTSKVQKLQRASLVNPVRVQISSKYQTVDKLLQYYVFIPLKMKDVYLVHLLNEAAGHSV 252
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
+VFC++ SS R + LL L S +PLH M Q +RL L++F+ +N +LLATDVA+RG
Sbjct: 253 MVFCSTCSSTLRTSLLLRALGISAVPLHGQMTQNKRLAALNKFKARNRGVLLATDVASRG 312
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK--------- 658
LDIP ++ VI+Y +P S+ YIHR GRTARA G + + ++ L +
Sbjct: 313 LDIPHVDWVINYDIPTHSKDYIHRVGRTARAGRSGKAISFVTQYDVELYQRIEHLLGKQL 372
Query: 659 --FNLQEEENNEEEER-AEADKEKTEDI 683
+ L+E + +ER AEA + D+
Sbjct: 373 PLYGLEEGDVMSLQERVAEAQRVAKMDL 400
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 94/202 (46%), Gaps = 48/202 (23%)
Query: 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 233
PT IQ +P AL R D++G AETGSGKT AF +P+L + L NP
Sbjct: 48 PTPIQREAIPLALQGR-DVIGLAETGSGKTGAFTLPMLHSL---LSNP------------ 91
Query: 234 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV 293
+L+ LIL PTRELA Q+ I G VK A +
Sbjct: 92 ------------------------QRLFGLILTPTRELAFQISEQIEALGSSIGVKCAVI 127
Query: 294 VGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGH 353
VGG+ Q +L K PHI++ATPGRL + H T+ + + L E D++++S
Sbjct: 128 VGGIDMISQSLMLAKKPHIVIATPGRLVD-----HLENTKGFNLKSLKYLEVDKILKS-- 180
Query: 354 FP-ELKNILDRVTMTETSQPRQ 374
P E + +L TMT Q Q
Sbjct: 181 IPRERRTLLFSATMTSKVQKLQ 202
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
LIL PTRELA Q+ I G VK A +VGG+ Q +L K PHI++ATPG L
Sbjct: 96 GLILTPTRELAFQISEQIEALGSSIGVKCAVIVGGIDMISQSLMLAKKPHIVIATPGRLV 155
Query: 1415 ----SLKRIDLAKSIEYLE-SKIKKNRP 1437
+ K +L KS++YLE KI K+ P
Sbjct: 156 DHLENTKGFNL-KSLKYLEVDKILKSIP 182
>gi|419766821|ref|ZP_14292997.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
gi|383353731|gb|EID31335.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
Length = 524
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|418028611|ref|ZP_12667169.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNCM I-1630]
gi|354686831|gb|EHE86956.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNCM I-1630]
Length = 522
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 208/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ +V + RQT +FSAT+ +
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISQV-----PEERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLGIIENLTKK 360
Score = 120 bits (302), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 113/232 (48%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I A+ GF+ P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLD 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I TEE N + AL++APTRELA
Sbjct: 62 KI------RTEE---------------------------------NTIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
I L++DE D M+ G +++ I+ +V + RQT++ S P+
Sbjct: 143 ---NIETLILDEADEMLNMGFLEDIEAIISQV-----PEERQTLLFSATMPD 186
Score = 90.9 bits (224), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 525 ILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
I K EK D+ + P ++VF + V LT+ L + +H ++Q +R
Sbjct: 219 IRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKR 278
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L+ + F++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 279 LRIIRDFKNGQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQ 338
Query: 644 TVVLIESDEI 653
++ + +E+
Sbjct: 339 SITFVSPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 130
>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|406579294|ref|ZP_11054526.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|406581588|ref|ZP_11056725.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|406584027|ref|ZP_11059065.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|406589825|ref|ZP_11064245.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410938072|ref|ZP_11369930.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|424789110|ref|ZP_18215819.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium V689]
gi|424953765|ref|ZP_18368708.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium R494]
gi|424962400|ref|ZP_18376756.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium P1986]
gi|424963599|ref|ZP_18377803.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium P1190]
gi|424970725|ref|ZP_18384213.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium P1139]
gi|424978089|ref|ZP_18391038.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium P1123]
gi|425038208|ref|ZP_18442830.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|425058609|ref|ZP_18461987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|425060636|ref|ZP_18463922.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|427397059|ref|ZP_18889685.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430820898|ref|ZP_19439518.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430823396|ref|ZP_19441967.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430826317|ref|ZP_19444503.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430828899|ref|ZP_19447010.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430834757|ref|ZP_19452759.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430836494|ref|ZP_19454473.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430839412|ref|ZP_19457353.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430843175|ref|ZP_19461076.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430850821|ref|ZP_19468578.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430853175|ref|ZP_19470905.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430858894|ref|ZP_19476513.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430861435|ref|ZP_19478942.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430866428|ref|ZP_19481705.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430892938|ref|ZP_19484559.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430952632|ref|ZP_19486438.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|431000766|ref|ZP_19488247.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|431234137|ref|ZP_19502906.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|431256501|ref|ZP_19504856.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|431303424|ref|ZP_19508271.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|431380394|ref|ZP_19510775.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|431441111|ref|ZP_19513326.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|431506774|ref|ZP_19515600.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|431725207|ref|ZP_19525416.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|431744090|ref|ZP_19532962.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|431747114|ref|ZP_19535916.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|431760196|ref|ZP_19548798.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|431765027|ref|ZP_19553551.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|402922578|gb|EJX42943.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium V689]
gi|402938304|gb|EJX57320.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium R494]
gi|402940682|gb|EJX59477.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium P1986]
gi|402948694|gb|EJX66809.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium P1190]
gi|402960765|gb|EJX77866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium P1139]
gi|402963120|gb|EJX80012.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium P1123]
gi|403019904|gb|EJY32478.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|403038013|gb|EJY49253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|403042418|gb|EJY53373.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|404455599|gb|EKA02443.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|404459354|gb|EKA05720.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|404464924|gb|EKA10437.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|404470265|gb|EKA14916.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410733711|gb|EKQ75634.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|425722385|gb|EKU85280.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430439035|gb|ELA49418.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430442109|gb|ELA52157.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430445197|gb|ELA54971.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430482561|gb|ELA59676.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430484826|gb|ELA61773.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430488294|gb|ELA64976.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430490870|gb|ELA67366.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430497924|gb|ELA73941.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430535180|gb|ELA75603.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430540997|gb|ELA81174.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430544740|gb|ELA84762.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430549900|gb|ELA89710.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430551656|gb|ELA91407.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430555404|gb|ELA94942.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430557231|gb|ELA96699.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|430562425|gb|ELB01657.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|430573163|gb|ELB11993.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|430577603|gb|ELB16190.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|430580065|gb|ELB18545.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|430582262|gb|ELB20689.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|430586467|gb|ELB24719.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|430587161|gb|ELB25394.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|430595854|gb|ELB33732.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|430605718|gb|ELB43100.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|430607222|gb|ELB44549.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|430624005|gb|ELB60656.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|430629510|gb|ELB65910.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
Length = 503
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 140/468 (29%), Positives = 227/468 (48%), Gaps = 79/468 (16%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE +++++ + GF+ T IQS +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DE D M+ G +++ I+ +V RQT +FSAT+ ++KN + +K
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKN-IGVK----- 194
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFIL 1074
+K+P V + K + + + K EK D F +
Sbjct: 195 ------------------FMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDV 236
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q P T+VF + V L + L +H ++Q++R+ L F+ + IL+AT
Sbjct: 237 QTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVAT 296
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G+++ + +E+ + N
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIEN 356
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
+K++ P ++ + L ++E +E+K+ +N D +L
Sbjct: 357 LTKKRMTTLRPPTEKEAF-----KGQLGAAVEQIETKLAENGLDKYLQ 399
Score = 116 bits (290), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 117/231 (50%), Gaps = 50/231 (21%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE +++++ + GF+ T IQS +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKNI 388
LV+DE D M+ G +++ I+ +V RQT++ S P +KNI
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKNI 191
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K+P V + K + + + K EK D F +Q P T+VF + V L
Sbjct: 196 MKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L +H ++Q++R+ L F+ + IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 ARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G++V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ L++APTRELAIQ Q + G+ V+V V GG +Q+R L PHI+V T
Sbjct: 67 RHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGT 126
Query: 1411 PGAL 1414
PG +
Sbjct: 127 PGRM 130
Score = 41.2 bits (95), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA G+++ + +E+ + N +K++ P ++
Sbjct: 320 PESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAF----- 374
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAK 1325
+ L ++E +E+K+ +N D +L+ A K
Sbjct: 375 KGQLGAAVEQIETKLAENGLDKYLQTADK 403
>gi|335029349|ref|ZP_08522856.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
gi|334268646|gb|EGL87078.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
Length = 524
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL- 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
E ED+ + AL++APTRELA
Sbjct: 61 ------EKIHTEDQT--------------------------------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPEA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 122/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTL- 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
E ED+ + AL++APTRELA
Sbjct: 61 ------EKIHTEDQT--------------------------------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S PE + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPE---AIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|403222338|dbj|BAM40470.1| ATP-dependent RNA helicase [Theileria orientalis strain Shintoku]
Length = 470
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 138/427 (32%), Positives = 218/427 (51%), Gaps = 75/427 (17%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE + RA Q G+K PTKIQ +P AL KDI+G AETGSGKT AF IPIL + L
Sbjct: 64 PE-LCRACKQLGWKRPTKIQVEAIPVALQG-KDIIGLAETGSGKTAAFTIPILQKL---L 118
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E P +L++LIL PTREL++Q++
Sbjct: 119 EKP------------------------------------QRLFSLILTPTRELSLQIKEQ 142
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+L G + V ++GG+ Q L+K PHI+V +PGR+ + +Q + L I
Sbjct: 143 LLSLGSEIGLDVCLILGGLDMVTQALQLSKKPHIIVGSPGRVADHLQ--NTKGFSLETIK 200
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
+LV+DE DR++ L I+ + + R T+++SAT+T L SK
Sbjct: 201 FLVLDEADRILSIDFDDSLNKIIQSL-----PKERITYLYSATMTSKL----------SK 245
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 1075
+KV+ P +++ K + L + +L K +YL + +
Sbjct: 246 LQKVTLIKP----------------ININTKYHTNQLLIQKYLLIPLKFKFTYLACVLWK 289
Query: 1076 HPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
P T ++FCN+ + +++T L L+ + LH + Q QRL +L+ F+ ++L+ T
Sbjct: 290 FPQSTCMIFCNTCLTSQKVTIFLQNLEFKSICLHGKLTQTQRLNSLNSFKTGLKNVLVVT 349
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DV +RGLDIP ++ VI++ VP+TS+ YIHR GRTARA GL++ I ++ + ++
Sbjct: 350 DVGSRGLDIPLVDLVINFDVPQTSKDYIHRVGRTARAGKSGLSVTFITQYDVESFQRIEY 409
Query: 1195 SLEKKVD 1201
+L+KK++
Sbjct: 410 TLDKKLE 416
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 98/191 (51%), Gaps = 43/191 (22%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE + RA Q G+K PTKIQ +P AL KDI+G AETGSGKT AF IPIL + L
Sbjct: 64 PE-LCRACKQLGWKRPTKIQVEAIPVALQG-KDIIGLAETGSGKTAAFTIPILQKL---L 118
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E P +L++LIL PTREL++Q++
Sbjct: 119 EKP------------------------------------QRLFSLILTPTRELSLQIKEQ 142
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+L G + V ++GG+ Q L+K PHI+V +PGR+ + +Q + L I
Sbjct: 143 LLSLGSEIGLDVCLILGGLDMVTQALQLSKKPHIIVGSPGRVADHLQ--NTKGFSLETIK 200
Query: 339 YLVIDETDRMI 349
+LV+DE DR++
Sbjct: 201 FLVLDEADRIL 211
Score = 104 bits (260), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 8/175 (4%)
Query: 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 534
E+ +YLY T+ ++ L + K +++ K + L + +L K +
Sbjct: 229 ERITYLY-------SATMTSKLSKLQKVTLIKPININTKYHTNQLLIQKYLLIPLKFKFT 281
Query: 535 YLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 593
YL + + P T ++FCN+ + +++T L L+ + LH + Q QRL +L+ F+
Sbjct: 282 YLACVLWKFPQSTCMIFCNTCLTSQKVTIFLQNLEFKSICLHGKLTQTQRLNSLNSFKTG 341
Query: 594 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
++L+ TDV +RGLDIP ++ VI++ VP+TS+ YIHR GRTARA GL+V I
Sbjct: 342 LKNVLVVTDVGSRGLDIPLVDLVINFDVPQTSKDYIHRVGRTARAGKSGLSVTFI 396
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 19/134 (14%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+LIL PTREL++Q++ +L G + V ++GG+ Q L+K PHI+V +PG ++
Sbjct: 126 SLILTPTRELSLQIKEQLLSLGSEIGLDVCLILGGLDMVTQALQLSKKPHIIVGSPGRVA 185
Query: 1416 -----LKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE--NLIQPKANSRENA 1468
K L ++I++L L++A + + I DD +IQ R
Sbjct: 186 DHLQNTKGFSL-ETIKFL-----------VLDEADRILSIDFDDSLNKIIQSLPKERITY 233
Query: 1469 LMSKALVSKRKELQ 1482
L S + SK +LQ
Sbjct: 234 LYSATMTSKLSKLQ 247
>gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
Length = 522
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 151/470 (32%), Positives = 220/470 (46%), Gaps = 91/470 (19%)
Query: 763 MFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
M V M E K I + II AL GF+ PT IQ +P AL D++G A+TG+GKT
Sbjct: 1 MEVYMLEKFKNLQISDVIINALNDMGFEEPTPIQEGSIPVALEG-HDMIGQAQTGTGKTA 59
Query: 822 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881
A+GIP+L I+ +G +E L ++I
Sbjct: 60 AYGIPVLEKILA------------AGAPKE-------------------------LQSVI 82
Query: 882 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941
L+PTRELAIQV I +YTPV+ + GG E+QLR L K P I+VATPGRL + +
Sbjct: 83 LSPTRELAIQVAEEINHLAQYTPVQALPIYGGQDMERQLRRLRKSPQIIVATPGRLIDHM 142
Query: 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001
+ G L+ I+ +V+DE D M+ G ++ I M+ T + RQT +FSAT+
Sbjct: 143 KRGTVKLS---SISTIVLDEADEMLNMGFIDDINLI-----MSATPETRQTLLFSATMP- 193
Query: 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
I++L + +K P+I+ + K + +S I
Sbjct: 194 ----------------------APIQKLAETF-LKDPQIIRMKAKEVTIDLVEQSYIEVA 230
Query: 1062 HDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
+K L + LQ P ++F + V L++ L S +H + Q +R +
Sbjct: 231 DRQKFDVLCRLLDLQEPDLAIIFVRTKRRVDELSEGLKKRGYSAEGIHGDLTQAKRDSVI 290
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+FR++ IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G
Sbjct: 291 RQFREKTIDILVATDVAARGLDISGVTHVYNYDLPQDPESYVHRVGRTGRAGQSGEATTF 350
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLES 1230
+ IP I ++EK LIK RI K+ + E+
Sbjct: 351 V----IPREIDHLRTIEK---------------LIKHRISRRKAPSFSEA 381
Score = 125 bits (314), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 120/239 (50%), Gaps = 47/239 (19%)
Query: 146 MFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
M V M E K I + II AL GF+ PT IQ +P AL D++G A+TG+GKT
Sbjct: 1 MEVYMLEKFKNLQISDVIINALNDMGFEEPTPIQEGSIPVALEG-HDMIGQAQTGTGKTA 59
Query: 205 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264
A+GIP+L I+ +G +E L ++I
Sbjct: 60 AYGIPVLEKILA------------AGAPKE-------------------------LQSVI 82
Query: 265 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 324
L+PTRELAIQV I +YTPV+ + GG E+QLR L K P I+VATPGRL + +
Sbjct: 83 LSPTRELAIQVAEEINHLAQYTPVQALPIYGGQDMERQLRRLRKSPQIIVATPGRLIDHM 142
Query: 325 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
+ G L+ I+ +V+DE D M+ G ++ I M+ T + RQT++ S P
Sbjct: 143 KRGTVKLS---SISTIVLDEADEMLNMGFIDDINLI-----MSATPETRQTLLFSATMP 193
Score = 87.0 bits (214), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 3/166 (1%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRT 547
T+ IQ L +K P+I+ + K + +S I +K L + LQ P
Sbjct: 191 TMPAPIQKLAETFLKDPQIIRMKAKEVTIDLVEQSYIEVADRQKFDVLCRLLDLQEPDLA 250
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++F + V L++ L S +H + Q +R + +FR++ IL+ATDVAARG
Sbjct: 251 IIFVRTKRRVDELSEGLKKRGYSAEGIHGDLTQAKRDSVIRQFREKTIDILVATDVAARG 310
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LDI G+ HV +Y +P+ E Y+HR GRT RA G + EI
Sbjct: 311 LDISGVTHVYNYDLPQDPESYVHRVGRTGRAGQSGEATTFVIPREI 356
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
++IL+PTRELAIQV I +YTPV+ + GG E+QLR L K P I+VATPG L
Sbjct: 80 SVILSPTRELAIQVAEEINHLAQYTPVQALPIYGGQDMERQLRRLRKSPQIIVATPGRL 138
>gi|431208676|ref|ZP_19500889.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
gi|430570682|gb|ELB09622.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
Length = 503
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 140/468 (29%), Positives = 227/468 (48%), Gaps = 79/468 (16%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE +++++ + GF+ T IQS +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DE D M+ G +++ I+ +V RQT +FSAT+ ++KN + +K
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKN-IGVK----- 194
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFIL 1074
+K+P V + K + + + K EK D F +
Sbjct: 195 ------------------FMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDV 236
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q P T+VF + V L + L +H ++Q++R+ L F+ + IL+AT
Sbjct: 237 QTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVAT 296
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G+++ + +E+ + N
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIEN 356
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
+K++ P ++ + L ++E +E+K+ +N D +L
Sbjct: 357 LTKKRMTTLRPPTEKEAF-----KGQLGAAVEQIETKLAENGLDKYLQ 399
Score = 116 bits (290), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 117/231 (50%), Gaps = 50/231 (21%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE +++++ + GF+ T IQS +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKNI 388
LV+DE D M+ G +++ I+ +V RQT++ S P +KNI
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKNI 191
Score = 92.0 bits (227), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K+P V + K + + + K EK D F +Q P T+VF + V L
Sbjct: 196 MKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L +H ++Q++R+ L F+ + IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 ARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G++V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ L++APTRELAIQ Q + G+ V+V V GG +Q+R L PHI+V T
Sbjct: 67 RHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGT 126
Query: 1411 PGAL 1414
PG +
Sbjct: 127 PGRM 130
Score = 41.2 bits (95), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA G+++ + +E+ + N +K++ P ++
Sbjct: 320 PESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAF----- 374
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAK 1325
+ L ++E +E+K+ +N D +L+ A K
Sbjct: 375 KGQLGAAVEQIETKLAENGLDKYLQTADK 403
>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
Length = 523
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + AL++APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALVIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDA----- 187
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
IKR+ + +K P+ V + K T+ + + I K +EK D
Sbjct: 188 ------------------IKRI-GVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 114 bits (285), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + AL++APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALVIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|375145001|ref|YP_005007442.1| DEAD/DEAH box helicase [Niastella koreensis GR20-10]
gi|361059047|gb|AEV98038.1| DEAD/DEAH box helicase domain protein [Niastella koreensis GR20-10]
Length = 419
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 131/417 (31%), Positives = 205/417 (49%), Gaps = 66/417 (15%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ N+ E I+RAL +G+ TPT IQ +P +L RKD+ G A TG+GKT AF IP+L
Sbjct: 3 FQNLNVIEPILRALNNEGYTTPTPIQEQAIP-LVLQRKDLFGCARTGTGKTAAFAIPVL- 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
++L E ++ + K N + ALIL PTRELA
Sbjct: 61 ------------------------QILHEQKQAA-------KAPDNTIKALILTPTRELA 89
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
IQ++ + GK+T ++ A + GG+S + Q+ L + ILVATPGRL + I
Sbjct: 90 IQIKESLDAYGKFTGLRHAVIFGGVSQQAQVTTLRRGVDILVATPGRLLDLIDQ---RFV 146
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
L I L++DE DRM++ G ++K I M + + RQT FSAT+
Sbjct: 147 NLGSIRLLILDEADRMLDMGFVHDVKKI-----MAKVPKQRQTLFFSATMA--------- 192
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
P+I++L + L + +P +++T +T+ ++ K S L
Sbjct: 193 --------------PAIRQLANTL-LTNPVSIEVTPVSSTAETVRQAVYFVPKTSKQSLL 237
Query: 1070 YYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ + LVF + R+ + L S +H + +Q+ R L +FR +
Sbjct: 238 KHLLADTDIPMALVFTRTKHGADRVAKELNNFGISAAAIHGNKSQQARQTALLKFRSRQI 297
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+L+ATD+AARG+DI + HVI+Y +P +E Y+HR GRT RA G+ + + +E
Sbjct: 298 QVLVATDIAARGIDIDELSHVINYDLPEVAETYVHRIGRTGRAGANGMAVSFCDQEE 354
Score = 126 bits (316), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 127/267 (47%), Gaps = 69/267 (25%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ N+ E I+RAL +G+ TPT IQ +P +L RKD+ G A TG+GKT AF IP+L
Sbjct: 3 FQNLNVIEPILRALNNEGYTTPTPIQEQAIP-LVLQRKDLFGCARTGTGKTAAFAIPVL- 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
++L E ++ + K N + ALIL PTRELA
Sbjct: 61 ------------------------QILHEQKQAA-------KAPDNTIKALILTPTRELA 89
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
IQ++ + GK+T ++ A + GG+S + Q+ L + ILVATPGRL + I
Sbjct: 90 IQIKESLDAYGKFTGLRHAVIFGGVSQQAQVTTLRRGVDILVATPGRLLDLIDQ---RFV 146
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
L I L++DE DRM++ G ++K I+ +V P+Q
Sbjct: 147 NLGSIRLLILDEADRMLDMGFVHDVKKIMAKV-------PKQ------------------ 181
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLN 419
RQT FSAT+ +++ N
Sbjct: 182 --------RQTLFFSATMAPAIRQLAN 200
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
Query: 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKI 525
KI+ K ++ L++ T+ I+ L N + +P +++T +T+ ++
Sbjct: 173 KIMAKVPKQRQTLFF------SATMAPAIRQLANTLLTNPVSIEVTPVSSTAETVRQAVY 226
Query: 526 LCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
K S L + + LVF + R+ + L S +H + +Q+ R
Sbjct: 227 FVPKTSKQSLLKHLLADTDIPMALVFTRTKHGADRVAKELNNFGISAAAIHGNKSQQARQ 286
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
L +FR + +L+ATD+AARG+DI + HVI+Y +P +E Y+HR GRT RA G+
Sbjct: 287 TALLKFRSRQIQVLVATDIAARGIDIDELSHVINYDLPEVAETYVHRIGRTGRAGANGMA 346
Query: 645 VVLIESDE 652
V + +E
Sbjct: 347 VSFCDQEE 354
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELAIQ++ + GK+T ++ A + GG+S + Q+ L + ILVATPG L
Sbjct: 79 ALILTPTRELAIQIKESLDAYGKFTGLRHAVIFGGVSQQAQVTTLRRGVDILVATPGRL 137
>gi|392429044|ref|YP_006470055.1| ATP-dependent RNA helicase [Streptococcus intermedius JTH08]
gi|419776490|ref|ZP_14302412.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus intermedius SK54]
gi|383845901|gb|EID83301.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus intermedius SK54]
gi|391758190|dbj|BAM23807.1| ATP-dependent RNA helicase [Streptococcus intermedius JTH08]
Length = 514
Score = 200 bits (508), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ KF++ ++ + + GF + IQ +P A+ KD++G A+TG+GKT AFG P L
Sbjct: 3 FNKFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEG-KDVIGQAQTGTGKTAAFGFPTLE 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I ENP F++ AL++APTRELA
Sbjct: 62 KI--NTENP------------------------------FIQ-------ALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ L++DE D M+ G +++ I+ RV + RQT +FSAT+ ++K
Sbjct: 143 H---VEILILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDAIKRI--- 191
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
+K ++D P V + K T+ + + I K +EK D+
Sbjct: 192 ---------------GVKFMKD------PTHVKIAAKELTTELVDQYYIRVKENEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P ++VF + V LT+ + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELSIVFGRTKRRVDELTRGFKLRGFRAEGIHGDLDQGKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ SL KK
Sbjct: 350 YLQIIESLTKK 360
Score = 113 bits (282), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 122/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ KF++ ++ + + GF + IQ +P A+ KD++G A+TG+GKT AFG P L
Sbjct: 3 FNKFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEG-KDVIGQAQTGTGKTAAFGFPTLE 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I ENP F++ AL++APTRELA
Sbjct: 62 KI--NTENP------------------------------FIQ-------ALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 H---VEILILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVKFMKDPTHVKIAAKELTTEL 213
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKDPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGFKLRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|389857075|ref|YP_006359318.1| superfamily II DNA/RNA helicase [Streptococcus suis ST1]
gi|353740793|gb|AER21800.1| superfamily II DNA/RNA helicase [Streptococcus suis ST1]
Length = 514
Score = 200 bits (508), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 131/431 (30%), Positives = 207/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E I+ A+ + GF+TP+ IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I D N+ ++ +LI+APTRELA
Sbjct: 62 KI----------DTNNQAIQ-----------------------------SLIIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLD 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN-SLN 1008
+ L++DE D M+ G +++ I++RV + RQT +FSAT+ +K +
Sbjct: 143 ---GVETLILDEADEMLNMGFLDDIEAIIERV-----PESRQTLLFSATMPEPIKRIGVK 194
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
K K +K ++ Q L +K +H++ D+
Sbjct: 195 FMKEPEHVKIAAKELTNVNVDQYYLRVK------------------------EHEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + L KK
Sbjct: 350 YLAIIEDLTKK 360
Score = 123 bits (309), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 115/232 (49%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E I+ A+ + GF+TP+ IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I D N+ ++ +LI+APTRELA
Sbjct: 62 KI----------DTNNQAIQ-----------------------------SLIIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLD 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ L++DE D M+ G +++ I++RV + RQT++ S PE
Sbjct: 143 ---GVETLILDEADEMLNMGFLDDIEAIIERV-----PESRQTLLFSATMPE 186
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 71/125 (56%)
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
H++ D+ + P ++VF + V LT+ L + +H ++Q +RL+ +
Sbjct: 224 HEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIR 283
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
F++ +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ +
Sbjct: 284 DFKNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFV 343
Query: 649 ESDEI 653
+E+
Sbjct: 344 SPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+LI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 SLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++ +E+ I + D L +M + D E +I+ SR+ L S
Sbjct: 131 ---LDLIKRKALKLDGVETLI-LDEADEML-----NMGFLDDIEAIIERVPESRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|431036552|ref|ZP_19492322.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|431752972|ref|ZP_19541651.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|431763081|ref|ZP_19551634.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|430563092|gb|ELB02323.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|430612933|gb|ELB49957.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|430622775|gb|ELB59485.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
Length = 503
Score = 200 bits (508), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 139/468 (29%), Positives = 227/468 (48%), Gaps = 79/468 (16%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE +++++ + GF+ T IQ+ +P AL+ KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQAETIPLALVG-KDVIGQAQTGTGKTAAFGLPML------- 60
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DE D M+ G +++ I+ +V RQT +FSAT+ ++KN + +K
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKN-IGVK----- 194
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFIL 1074
+KSP V + K + + + K EK D F +
Sbjct: 195 ------------------FMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDV 236
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q P T+VF + V L + L +H ++Q++R+ L F+ + IL+AT
Sbjct: 237 QTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVAT 296
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G+++ + +E+ + N
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIEN 356
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
+K++ P ++ + L ++E +E+K+ +N D +L
Sbjct: 357 LTKKRMTTLRPPTEKEAF-----KGQLGAAVEQIETKLAENGLDKYLQ 399
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 50/231 (21%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE +++++ + GF+ T IQ+ +P AL+ KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQAETIPLALVG-KDVIGQAQTGTGKTAAFGLPML------- 60
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKNI 388
LV+DE D M+ G +++ I+ +V RQT++ S P +KNI
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKNI 191
Score = 93.2 bits (230), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+KSP V + K + + + K EK D F +Q P T+VF + V L
Sbjct: 196 MKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L +H ++Q++R+ L F+ + IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 ARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G++V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ L++APTRELAIQ Q + G+ V+V V GG +Q+R L PHI+V T
Sbjct: 67 RHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGT 126
Query: 1411 PGAL 1414
PG +
Sbjct: 127 PGRM 130
Score = 41.2 bits (95), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA G+++ + +E+ + N +K++ P ++
Sbjct: 320 PESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAF----- 374
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAK 1325
+ L ++E +E+K+ +N D +L+ A K
Sbjct: 375 KGQLGAAVEQIETKLAENGLDKYLQTADK 403
>gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84]
gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7]
gi|253756028|ref|YP_003029168.1| DEAD/DEAH box helicase [Streptococcus suis BM407]
gi|386580466|ref|YP_006076871.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
gi|386582541|ref|YP_006078945.1| superfamily II DNA/RNA helicase [Streptococcus suis SS12]
gi|386588666|ref|YP_006085067.1| superfamily II DNA/RNA helicase [Streptococcus suis A7]
gi|403062015|ref|YP_006650231.1| superfamily II DNA/RNA helicase [Streptococcus suis S735]
gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84]
gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407]
gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7]
gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
gi|353734687|gb|AER15697.1| superfamily II DNA/RNA helicase [Streptococcus suis SS12]
gi|354985827|gb|AER44725.1| superfamily II DNA/RNA helicase [Streptococcus suis A7]
gi|402809341|gb|AFR00833.1| superfamily II DNA/RNA helicase [Streptococcus suis S735]
Length = 514
Score = 200 bits (508), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 131/431 (30%), Positives = 207/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + E I+ A+ + GF+TP+ IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I D N+ ++ +LI+APTRELA
Sbjct: 62 KI----------DTNNQAIQ-----------------------------SLIIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLD 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN-SLN 1008
+ L++DE D M+ G +++ I++RV + RQT +FSAT+ +K +
Sbjct: 143 ---GVETLILDEADEMLNMGFLDDIEAIIERV-----PESRQTLLFSATMPEPIKRIGVK 194
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
K K +K ++ Q L +K +H++ D+
Sbjct: 195 FMKEPEHVKIAAKELTNVNVDQYYLRVK------------------------EHEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P ++VF + V LT+ L + +H ++Q +RL+ + F++
Sbjct: 231 TRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + L KK
Sbjct: 350 YLAIIEDLTKK 360
Score = 123 bits (309), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 115/232 (49%), Gaps = 48/232 (20%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + E I+ A+ + GF+TP+ IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I D N+ ++ +LI+APTRELA
Sbjct: 62 KI----------DTNNQAIQ-----------------------------SLIIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLD 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ L++DE D M+ G +++ I++RV + RQT++ S PE
Sbjct: 143 ---GVETLILDEADEMLNMGFLDDIEAIIERV-----PESRQTLLFSATMPE 186
Score = 92.4 bits (228), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 71/125 (56%)
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
H++ D+ + P ++VF + V LT+ L + +H ++Q +RL+ +
Sbjct: 224 HEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIR 283
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
F++ +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ +
Sbjct: 284 DFKNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFV 343
Query: 649 ESDEI 653
+E+
Sbjct: 344 SPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+LI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 SLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++ +E+ I + D L +M + D E +I+ SR+ L S
Sbjct: 131 ---LDLIKRKALKLDGVETLI-LDEADEML-----NMGFLDDIEAIIERVPESRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|417846630|ref|ZP_12492623.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis SK1073]
gi|339458263|gb|EGP70806.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis SK1073]
Length = 524
Score = 200 bits (508), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++ +E+ I + D L +M + D E +I SR+ L S
Sbjct: 131 ---LDLIKRKALKLQDIETLI-LDEADEML-----NMGFLEDIEAIISRVPESRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|373858358|ref|ZP_09601095.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372451825|gb|EHP25299.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 560
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 153/492 (31%), Positives = 234/492 (47%), Gaps = 85/492 (17%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M +++ I E ++ L + G TPT IQ +P + DI+ A+TG+GKT AF +P
Sbjct: 1 MPDFLSMGISEMLVEKLQESGVVTPTPIQEQAIPYVMKG-NDIIAQAQTGTGKTFAFILP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL E L+ E+++ + ALI+ PTR
Sbjct: 60 IL----------------------------EHLDPEASH-----------VQALIVTPTR 80
Query: 887 ELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
ELA+Q+ P + V V GG +KQL+ L K I+V+TPGRL + I+ G
Sbjct: 81 ELALQITGEFKKLINDLPGIDVLAVYGGQDVDKQLKKLKKNVQIVVSTPGRLLDHIRRGT 140
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+L+E I+ LV+DE D+M++ G E++ I+D +T RQT +FSAT+
Sbjct: 141 VNLSE---ISSLVLDEADQMLQIGFLNEVEEIID-----QTPASRQTMLFSATMP----- 187
Query: 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 1065
P I+ L +++ PK + + + G +T+ + I K
Sbjct: 188 ------------------PEIRTLA-RKHMREPKYIQVEKTQGPAQTVNQLAIHTVDRAK 228
Query: 1066 DSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTM--LKCSPLPLHASMNQRQRLKNLDR 1122
+ L I H P ++FC + V +L + L KC L H ++Q +R + + R
Sbjct: 229 QATLIGLIEAHRPFLAVIFCRTKRRVSKLYEALRSHGYKCDEL--HGDLSQAKREQVMKR 286
Query: 1123 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIE 1182
FRD +L+ATDVAARGLD+ G+ HV +Y +P SE YIHR GRT RA G+ + L
Sbjct: 287 FRDAEVQLLIATDVAARGLDVEGVTHVYNYDIPLDSESYIHRIGRTGRAGMTGMAITLYA 346
Query: 1183 SDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
S + PL + +EK+++L I++ L ++K D S + R N
Sbjct: 347 SKDRPL----LDLIEKELNL---SIEKQNLGNMEKTDDETVDRPNRSSSSQMERRGNRKG 399
Query: 1243 RSGRTARANNEG 1254
RSGRT +G
Sbjct: 400 RSGRTEGPRRQG 411
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 119/248 (47%), Gaps = 49/248 (19%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M +++ I E ++ L + G TPT IQ +P + DI+ A+TG+GKT AF +P
Sbjct: 1 MPDFLSMGISEMLVEKLQESGVVTPTPIQEQAIPYVMKG-NDIIAQAQTGTGKTFAFILP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
IL E L+ E+++ + ALI+ PTR
Sbjct: 60 IL----------------------------EHLDPEASH-----------VQALIVTPTR 80
Query: 270 ELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
ELA+Q+ P + V V GG +KQL+ L K I+V+TPGRL + I+ G
Sbjct: 81 ELALQITGEFKKLINDLPGIDVLAVYGGQDVDKQLKKLKKNVQIVVSTPGRLLDHIRRGT 140
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
+L+E I+ LV+DE D+M++ G E++ I+D +T RQTM+ S P
Sbjct: 141 VNLSE---ISSLVLDEADQMLQIGFLNEVEEIID-----QTPASRQTMLFSATMPPEIRT 192
Query: 389 LDRVTMTE 396
L R M E
Sbjct: 193 LARKHMRE 200
Score = 103 bits (258), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 13/217 (5%)
Query: 491 TLCEEIQDLL--NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 547
T+ EI+ L +++ PK + + + G +T+ + I K + L I H P
Sbjct: 185 TMPPEIRTLARKHMREPKYIQVEKTQGPAQTVNQLAIHTVDRAKQATLIGLIEAHRPFLA 244
Query: 548 LVFCNSISSVKRLTQLLTM--LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
++FC + V +L + L KC L H ++Q +R + + RFRD +L+ATDVAA
Sbjct: 245 VIFCRTKRRVSKLYEALRSHGYKCDEL--HGDLSQAKREQVMKRFRDAEVQLLIATDVAA 302
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEE 665
RGLD+ G+ HV +Y +P SE YIHR GRT RA G+ + L S + PL +L E+E
Sbjct: 303 RGLDVEGVTHVYNYDIPLDSESYIHRIGRTGRAGMTGMAITLYASKDRPL---LDLIEKE 359
Query: 666 NNEEEERAE-ADKEKTED--INVTVSSKKKKLKRKQN 699
N E+ + EKT+D ++ S +++R+ N
Sbjct: 360 LNLSIEKQNLGNMEKTDDETVDRPNRSSSSQMERRGN 396
Score = 45.4 bits (106), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+Q+ P + V V GG +KQL+ L K I+V+TPG L
Sbjct: 73 ALIVTPTRELALQITGEFKKLINDLPGIDVLAVYGGQDVDKQLKKLKKNVQIVVSTPGRL 132
>gi|447911698|ref|YP_007393110.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
gi|445187407|gb|AGE29049.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
Length = 503
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 140/468 (29%), Positives = 226/468 (48%), Gaps = 79/468 (16%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE +++++ + GF+ T IQS +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E + R +L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRQELQGLVIAPTRELAIQTQEE 88
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DE D M+ G +++ I+ +V RQT +FSAT+ ++KN + +K
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKN-IGVK----- 194
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFIL 1074
+K+P V + K + + + K EK D F +
Sbjct: 195 ------------------FMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDV 236
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q P T+VF + V L + L +H ++Q++R+ L F+ + IL+AT
Sbjct: 237 QTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVAT 296
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G+++ + +E+ + N
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIEN 356
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
+K++ P ++ + L ++E +E+K+ +N D +L
Sbjct: 357 LTKKRMTTLRPPTEKEAF-----KGQLGAAVEQIETKLAENGLDKYLQ 399
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 116/231 (50%), Gaps = 50/231 (21%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE +++++ + GF+ T IQS +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E + R +L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRQELQGLVIAPTRELAIQTQEE 88
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKNI 388
LV+DE D M+ G +++ I+ +V RQT++ S P +KNI
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKNI 191
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K+P V + K + + + K EK D F +Q P T+VF + V L
Sbjct: 196 MKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L +H ++Q++R+ L F+ + IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 ARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G++V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R L++APTRELAIQ Q + G+ V+V V GG +Q+R L PHI+V T
Sbjct: 67 RQELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGT 126
Query: 1411 PGAL 1414
PG +
Sbjct: 127 PGRM 130
Score = 41.2 bits (95), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA G+++ + +E+ + N +K++ P ++
Sbjct: 320 PESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAF----- 374
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAK 1325
+ L ++E +E+K+ +N D +L+ A K
Sbjct: 375 KGQLGAAVEQIETKLAENGLDKYLQTADK 403
>gi|423070020|ref|ZP_17058796.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0413]
gi|355366341|gb|EHG14059.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0413]
Length = 514
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +F++ ++ + + GF + IQ +P A+ KD++G A+TG+GKT AFG P L
Sbjct: 3 FNEFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEG-KDVIGQAQTGTGKTAAFGFPTLE 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I ENP F++ AL++APTRELA
Sbjct: 62 KI--NTENP------------------------------FIQ-------ALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ L++DE D M+ G +++ I+ RV + RQT +FSAT+ ++K
Sbjct: 143 H---VEILILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMPDAIKRI--- 191
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
+K ++D P V + K T+ + + I K +EK D+
Sbjct: 192 ---------------GVKFMKD------PTHVKIAAKELTTELVDQYYIRVKENEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P ++VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ SL KK
Sbjct: 350 YLQIIESLTKK 360
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +F++ ++ + + GF + IQ +P A+ KD++G A+TG+GKT AFG P L
Sbjct: 3 FNEFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEG-KDVIGQAQTGTGKTAAFGFPTLE 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I ENP F++ AL++APTRELA
Sbjct: 62 KI--NTENP------------------------------FIQ-------ALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 H---VEILILDEADEMLNMGFLEDIEAIISRV-----PEERQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVKFMKDPTHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKDPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|422881818|ref|ZP_16928274.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
Length = 523
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 213/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ + P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 96.7 bits (239), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ + P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|422824031|ref|ZP_16872219.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
gi|422858936|ref|ZP_16905586.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
Length = 523
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 213/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPNHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKISGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPNHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPNHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKISGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|157150549|ref|YP_001450886.1| DEAD/DEAH box helicase [Streptococcus gordonii str. Challis substr.
CH1]
gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
gordonii str. Challis substr. CH1]
Length = 523
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 135/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + AL++APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALVIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LDQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 114 bits (284), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + AL++APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALVIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LDQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|332016384|gb|EGI57297.1| Putative ATP-dependent RNA helicase DDX49 [Acromyrmex echinatior]
Length = 461
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 220/445 (49%), Gaps = 82/445 (18%)
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G K PT IQ +P L+ +D +G A+TGSGKTLAF +PIL + E+P
Sbjct: 30 GLKKPTPIQQNCIPRILMG-EDCIGCAKTGSGKTLAFVLPILQKLC---EDPY------- 78
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
++AL+L PTRELA Q+ + GK +K
Sbjct: 79 -----------------------------GIFALVLTPTRELAFQIADQFTAIGKAINLK 109
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966
+VGGM Q L+K PHI+VATPGRL + L L KI +LV+DE DR++
Sbjct: 110 KCVIVGGMDMMVQGLELSKRPHIVVATPGRLAD--HLDSCDTFSLQKIKFLVLDEADRLL 167
Query: 967 ESGHF-PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 1025
GHF +LK I + +Q FSAT+T +L K K+++ +
Sbjct: 168 -GGHFDGQLKTIF-----AALPKQKQVLFFSATMTDTL----------DKVKQIASAEVF 211
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-----LQHPGRT 1080
+ +D I + K L + +LC D DSYL I G
Sbjct: 212 TWQEEDDFGIAT------------VKELDQRYVLCPKDVLDSYLVEVIKTFRTTNENGSI 259
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F ++ + L+ +L + + + LHA + Q++RL L++F+ + IL+ATDVAARG
Sbjct: 260 MIFTDTCKYCQLLSMMLNNVGFTNVALHAMIKQKERLAALNKFKSNHVQILIATDVAARG 319
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-- 1198
LDIP ++ +I++ +P + YIHR GRTARA G+++ LI ++ IK+ +++E
Sbjct: 320 LDIPTVQLIINHVIPNVPKEYIHRVGRTARAGKNGMSISLITPND----IKLLHAIENVI 375
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAK 1223
+ L ++ ID+ + I ++ +AK
Sbjct: 376 GIKLTEYKIDDKKIITILTQVSVAK 400
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 140/487 (28%), Positives = 209/487 (42%), Gaps = 150/487 (30%)
Query: 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229
G K PT IQ +P L+ +D +G A+TGSGKTLAF +PIL + E+P
Sbjct: 30 GLKKPTPIQQNCIPRILMG-EDCIGCAKTGSGKTLAFVLPILQKLC---EDPY------- 78
Query: 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 289
++AL+L PTRELA Q+ + GK +K
Sbjct: 79 -----------------------------GIFALVLTPTRELAFQIADQFTAIGKAINLK 109
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349
+VGGM Q L+K PHI+VATPGRL + L L KI +LV+DE DR++
Sbjct: 110 KCVIVGGMDMMVQGLELSKRPHIVVATPGRLAD--HLDSCDTFSLQKIKFLVLDEADRLL 167
Query: 350 ESGHF-PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 408
GHF +LK I + P+Q +Q FSA
Sbjct: 168 -GGHFDGQLKTIF-------AALPKQ--------------------------KQVLFFSA 193
Query: 409 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468
T+T +L K K+++ + + +D I + K L +
Sbjct: 194 TMTDTL----------DKVKQIASAEVFTWQEEDDFGIAT------------VKELDQRY 231
Query: 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 528
+LC D DSY L E I +T E+
Sbjct: 232 VLCPKDVLDSY------------------------------LVEVIKTFRTTNEN----- 256
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
G ++F ++ + L+ +L + + + LHA + Q++RL L+
Sbjct: 257 ----------------GSIMIFTDTCKYCQLLSMMLNNVGFTNVALHAMIKQKERLAALN 300
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+F+ + IL+ATDVAARGLDIP ++ +I++ +P + YIHR GRTARA G+++ LI
Sbjct: 301 KFKSNHVQILIATDVAARGLDIPTVQLIINHVIPNVPKEYIHRVGRTARAGKNGMSISLI 360
Query: 649 ESDEIPL 655
++I L
Sbjct: 361 TPNDIKL 367
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y AL+L PTRELA Q+ + GK +K +VGGM Q L+K PHI+VATP
Sbjct: 78 YGIFALVLTPTRELAFQIADQFTAIGKAINLKKCVIVGGMDMMVQGLELSKRPHIVVATP 137
Query: 1412 GALS 1415
G L+
Sbjct: 138 GRLA 141
Score = 41.6 bits (96), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 1224 SIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK--KVDL 1281
+++ + + + N P ++HR GRTARA G+++ LI ++ IK+ +++E + L
Sbjct: 324 TVQLIINHVIPNVPKEYIHRVGRTARAGKNGMSISLITPND----IKLLHAIENVIGIKL 379
Query: 1282 PDFPIDESVLSLIKKRIDLAK 1302
++ ID+ + I ++ +AK
Sbjct: 380 TEYKIDDKKIITILTQVSVAK 400
>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
[Streptococcus sp. C300]
gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
[Streptococcus sp. C300]
Length = 449
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKDPEHVKIAAKELTTEL 213
Score = 95.9 bits (237), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
Length = 503
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 140/468 (29%), Positives = 227/468 (48%), Gaps = 79/468 (16%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE +++++ + GF+ T IQS +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DE D M+ G +++ I+ +V RQT +FSAT+ ++KN + +K
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKN-IGVK----- 194
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFIL 1074
+K+P V + K + + + K EK D F +
Sbjct: 195 ------------------FMKNPHHVKIKAKEVTADLIDQYYVRAKEYEKFDIMTRLFDV 236
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q P T+VF + V L + L +H ++Q++R+ L F+ + IL+AT
Sbjct: 237 QTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVAT 296
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G+++ + +E+ + N
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIEN 356
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
+K++ P ++ + L ++E +E+K+ +N D +L
Sbjct: 357 LTKKRMTTLRPPTEKEAF-----KGQLGAAVEQIETKLAENGLDKYLQ 399
Score = 116 bits (290), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 117/231 (50%), Gaps = 50/231 (21%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE +++++ + GF+ T IQS +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKNI 388
LV+DE D M+ G +++ I+ +V RQT++ S P +KNI
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKNI 191
Score = 91.7 bits (226), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K+P V + K + + + K EK D F +Q P T+VF + V L
Sbjct: 196 MKNPHHVKIKAKEVTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L +H ++Q++R+ L F+ + IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 ARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G++V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ L++APTRELAIQ Q + G+ V+V V GG +Q+R L PHI+V T
Sbjct: 67 RHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGT 126
Query: 1411 PGAL 1414
PG +
Sbjct: 127 PGRM 130
Score = 41.2 bits (95), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA G+++ + +E+ + N +K++ P ++
Sbjct: 320 PESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAF----- 374
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAK 1325
+ L ++E +E+K+ +N D +L+ A K
Sbjct: 375 KGQLGAAVEQIETKLAENGLDKYLQTADK 403
>gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus]
Length = 522
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + ++ E I++A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELHLAEDILQAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I ++N N + AL++APTRELA
Sbjct: 62 KI--DIDN-------------------------------------NVIQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S +KQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ V RQT +FSAT+ +
Sbjct: 143 H---IETLILDEADEMLNMGFLEDIEAIISHV-----PDERQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K + + + I K EK D+
Sbjct: 188 ----------------IKRI-GVKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P ++VF + V LT+ L + +H ++Q +RL+ + F++ N
Sbjct: 231 TRLIDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+ + +L KK
Sbjct: 350 YLSIIENLTKK 360
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 124/259 (47%), Gaps = 51/259 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + ++ E I++A+ + GF P+ IQ + +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FTELHLAEDILQAVEKAGFVEPSPIQELTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLN 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I ++N N + AL++APTRELA
Sbjct: 62 KI--DIDN-------------------------------------NVIQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S +KQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALRSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
I L++DE D M+ G +++ I+ V RQT++ S P + + R+
Sbjct: 143 H---IETLILDEADEMLNMGFLEDIEAIISHV-----PDERQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLT 411
+ +P + + LT
Sbjct: 192 GVKFMKEPEHVKIAAKELT 210
Score = 95.1 bits (235), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K + + + I K EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLIDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ + F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G +V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEM 348
Score = 63.5 bits (153), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S +KQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALRSGAHIVVGTPGRL 130
>gi|365926646|ref|ZP_09449409.1| ATP-dependent RNA helicase [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420264912|ref|ZP_14767511.1| ATP-dependent RNA helicase [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394429548|gb|EJF01976.1| ATP-dependent RNA helicase [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 503
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 130/432 (30%), Positives = 215/432 (49%), Gaps = 74/432 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + + E I++A+ + GF+ T IQ+ +P +L +D++G A+TG+GKT AFG+PIL
Sbjct: 2 KFTELGLSENILKAINRSGFEEATPIQAETIP-LVLKGEDVIGQAQTGTGKTAAFGLPIL 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
I K +N++ A+I++PTREL
Sbjct: 61 NKIDTK---------------------------------------KNEIQAVIVSPTREL 81
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
AIQ Q + G+ KV V GG +Q+ L K P ILV TPGRL + I+
Sbjct: 82 AIQTQEELYRLGRDEHAKVQVVYGGADIRRQINSLKKAPQILVGTPGRLLDHIRR---RT 138
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+L +N +V+DE D M++ G ++++I+ V + RQT +FSAT+
Sbjct: 139 VKLDSVNVMVLDEADEMLDMGFVEDIESIIKAV-----PEKRQTLLFSATMP-------- 185
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DS 1067
P+I ++ + + P +V + K T + + + + EK D
Sbjct: 186 ---------------PAILKIGEKF-MHKPSVVKIKAKELTTDLVDQYYVRARDFEKFDV 229
Query: 1068 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
F +Q P T+VF + V L++ L + +H ++Q++R+ L +F+
Sbjct: 230 MTRIFDVQAPELTIVFGRTKRRVDELSKGLEARGYNAKGIHGDLSQQRRMSILKQFKAGK 289
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
IL+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA + G+++ + +E+
Sbjct: 290 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGVSVTFVTPNEMD 349
Query: 1188 LYIKMFNSLEKK 1199
Y+++ L KK
Sbjct: 350 -YLRVIEKLTKK 360
Score = 116 bits (291), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 116/232 (50%), Gaps = 48/232 (20%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + + E I++A+ + GF+ T IQ+ +P +L +D++G A+TG+GKT AFG+PIL
Sbjct: 2 KFTELGLSENILKAINRSGFEEATPIQAETIP-LVLKGEDVIGQAQTGTGKTAAFGLPIL 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
I K +N++ A+I++PTREL
Sbjct: 61 NKIDTK---------------------------------------KNEIQAVIVSPTREL 81
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
AIQ Q + G+ KV V GG +Q+ L K P ILV TPGRL + I+
Sbjct: 82 AIQTQEELYRLGRDEHAKVQVVYGGADIRRQINSLKKAPQILVGTPGRLLDHIRR---RT 138
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
+L +N +V+DE D M++ G ++++I+ V + RQT++ S P
Sbjct: 139 VKLDSVNVMVLDEADEMLDMGFVEDIESIIKAV-----PEKRQTLLFSATMP 185
Score = 94.4 bits (233), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
P +V + K T + + + + EK D F +Q P T+VF + V L++
Sbjct: 199 PSVVKIKAKELTTDLVDQYYVRARDFEKFDVMTRIFDVQAPELTIVFGRTKRRVDELSKG 258
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
L + +H ++Q++R+ L +F+ IL+ATDVAARGLDI G+ HV +Y +P+
Sbjct: 259 LEARGYNAKGIHGDLSQQRRMSILKQFKAGKLDILVATDVAARGLDISGVTHVYNYDIPQ 318
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEI 653
E Y+HR GRT RA + G++V + +E+
Sbjct: 319 DPESYVHRIGRTGRAGHHGVSVTFVTPNEM 348
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A+I++PTRELAIQ Q + G+ KV V GG +Q+ L K P ILV TPG L
Sbjct: 72 AVIVSPTRELAIQTQEELYRLGRDEHAKVQVVYGGADIRRQINSLKKAPQILVGTPGRL 130
>gi|159465205|ref|XP_001690813.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279499|gb|EDP05259.1| predicted protein [Chlamydomonas reinhardtii]
Length = 446
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 133/422 (31%), Positives = 210/422 (49%), Gaps = 72/422 (17%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
K I + A G+K P+ IQ +P LLA +D++G A+TGSGKT AF +PIL +
Sbjct: 21 KLGICTQLAEAAAGLGWKAPSHIQEQAIPH-LLAGQDVIGLAQTGSGKTGAFSLPILQAL 79
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
++K P E +ALIL+PTRELAIQ
Sbjct: 80 MDK---PQEH------------------------------------FALILSPTRELAIQ 100
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
+ + G VK +VGG+ Q L K PH+LV TPGR+ + L + L
Sbjct: 101 IAEQVEALGSGIGVKSCVLVGGIDMMAQAIALAKRPHVLVGTPGRVVD--HLSNTKGFSL 158
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
++ +LV+DE D++++ E+ IL + + R+T +FSAT+T+
Sbjct: 159 KQLKHLVLDEADKLLDMDFEQEIDQILKVI-----PRERRTQLFSATMTNK--------- 204
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
+++LQ + P +++ K TL + + KD YL Y
Sbjct: 205 --------------VQKLQRAC-LDKPVKIEVAHKYSTVDTLRQQYVFIPAKYKDCYLAY 249
Query: 1072 FILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
I + G T ++F + S +R+ LL L +P+H M+Q +RL L++F+ +I
Sbjct: 250 VINELSGSTFMIFTRTCESTRRIALLLRNLGFGAVPIHGHMSQPKRLGALNKFKSGERNI 309
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
L+ATDVA+RGLDIP ++ VI++ VP+ S+ Y+HR GRTARA G ++ ++ ++ L+
Sbjct: 310 LVATDVASRGLDIPSVDVVINFDVPQNSKDYVHRVGRTARAGRSGRSVTIVTQYDVELFQ 369
Query: 1191 KM 1192
K+
Sbjct: 370 KI 371
Score = 159 bits (403), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 137/504 (27%), Positives = 211/504 (41%), Gaps = 154/504 (30%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
K I + A G+K P+ IQ +P LLA +D++G A+TGSGKT AF +PIL +
Sbjct: 21 KLGICTQLAEAAAGLGWKAPSHIQEQAIPH-LLAGQDVIGLAQTGSGKTGAFSLPILQAL 79
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
++K P E +ALIL+PTRELAIQ
Sbjct: 80 MDK---PQEH------------------------------------FALILSPTRELAIQ 100
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
+ + G VK +VGG+ Q L K PH+LV TPGR+ + L + L
Sbjct: 101 IAEQVEALGSGIGVKSCVLVGGIDMMAQAIALAKRPHVLVGTPGRVVD--HLSNTKGFSL 158
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
++ +LV+DE D++++ E+ IL + PR+
Sbjct: 159 KQLKHLVLDEADKLLDMDFEQEIDQILKVI-------PRE-------------------- 191
Query: 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 454
R+T +FSAT+T+ +++LQ + P +++
Sbjct: 192 ------RRTQLFSATMTN-----------------------KVQKLQRAC-LDKPVKIEV 221
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514
K TL + + KD YL Y I + G T +
Sbjct: 222 AHKYSTVDTLRQQYVFIPAKYKDCYLAYVINELSGSTF---------------------M 260
Query: 515 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL 574
T+T C+ + + L R L F +P+
Sbjct: 261 IFTRT-------CESTRRIALLL--------RNLGF-------------------GAVPI 286
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H M+Q +RL L++F+ +IL+ATDVA+RGLDIP ++ VI++ VP+ S+ Y+HR GR
Sbjct: 287 HGHMSQPKRLGALNKFKSGERNILVATDVASRGLDIPSVDVVINFDVPQNSKDYVHRVGR 346
Query: 635 TARANNEGLTVVLIESDEIPLKTK 658
TARA G +V ++ ++ L K
Sbjct: 347 TARAGRSGRSVTIVTQYDVELFQK 370
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELAIQ+ + G VK +VGG+ Q L K PH+LV TPG
Sbjct: 88 ALILSPTRELAIQIAEQVEALGSGIGVKSCVLVGGIDMMAQAIALAKRPHVLVGTPG 144
>gi|401682240|ref|ZP_10814134.1| DEAD/DEAH box helicase [Streptococcus sp. AS14]
gi|400184676|gb|EJO18914.1| DEAD/DEAH box helicase [Streptococcus sp. AS14]
Length = 523
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 214/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEVSPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + I L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMPDAIKR-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P+ V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 114 bits (285), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 54/264 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEVSPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I +NP + ALI+APTRE
Sbjct: 60 LEKI--DTDNPA-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
L + I L++DE D M+ G ++++I+ RV + RQT++ S P + +
Sbjct: 141 LNQ---IETLILDEADEMLNMGFLEDIESIISRV-----PEERQTLLFSATMP---DAIK 189
Query: 391 RVTMTETSQPRQTFVFSATLTHSL 414
R+ + +P + + LT L
Sbjct: 190 RIGVKFMKEPEHVKIAAKELTTEL 213
Score = 97.4 bits (241), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|440784133|ref|ZP_20961554.1| ATP-dependent RNA helicase [Clostridium pasteurianum DSM 525]
gi|440219169|gb|ELP58384.1| ATP-dependent RNA helicase [Clostridium pasteurianum DSM 525]
Length = 479
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 140/444 (31%), Positives = 225/444 (50%), Gaps = 72/444 (16%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + KFNI + I+ +L + G+K PT++Q V+P +L KDI+ +ETGSGKT +FGIP
Sbjct: 1 MENFCKFNISKRILLSLEKLGYKNPTEVQKEVIP-LVLKNKDIIVQSETGSGKTASFGIP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
I I ++EN N + +L++ PTR
Sbjct: 60 ICEKI--QIEN-------------------------------------NIIQSLVITPTR 80
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
EL +Q++ + + G++ V+ A + G + Q+R L + H++V TPGR+ + + G
Sbjct: 81 ELCVQIKEDMSNIGRFKKVRCAAIFGKQTFSSQVRELKQRVHVVVGTPGRILDHMDRGTI 140
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
+LTE I YLVIDE D M+ G ++ NI++++ + R T +FSAT++ + N
Sbjct: 141 NLTE---IKYLVIDEADEMMNMGFIEQVTNIINKL-----PEKRVTMLFSATMSEQV-NL 191
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
L KK K +I NI S K +TE+I + E K D+ D
Sbjct: 192 L--------CKKYMKEAITI-------NINSEK--PITERIEDYYYIVEGK-----DKFD 229
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ P +++FCN+ ++V L LL S + +H M Q +RL+ + RF
Sbjct: 230 LLQKVIYKELPKSSIIFCNTRNNVDTLFNLLKDRGFSCISIHGGMLQEERLEAIRRFSRG 289
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+ L+ATD+A+RG+DI I HVI+Y +P E Y+HR GRT RA + G + + +++
Sbjct: 290 EFTFLIATDIASRGIDIADITHVINYDMPFEKENYVHRIGRTGRAESNGKAISFLTPNQL 349
Query: 1187 PLYIKMFNSLEKKVDLPDFP-IDE 1209
++ + + V L + P IDE
Sbjct: 350 RFLNEIEVYINRSVKLGEIPTIDE 373
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 127/248 (51%), Gaps = 48/248 (19%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + KFNI + I+ +L + G+K PT++Q V+P +L KDI+ +ETGSGKT +FGIP
Sbjct: 1 MENFCKFNISKRILLSLEKLGYKNPTEVQKEVIP-LVLKNKDIIVQSETGSGKTASFGIP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
I I ++EN N + +L++ PTR
Sbjct: 60 ICEKI--QIEN-------------------------------------NIIQSLVITPTR 80
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
EL +Q++ + + G++ V+ A + G + Q+R L + H++V TPGR+ + + G
Sbjct: 81 ELCVQIKEDMSNIGRFKKVRCAAIFGKQTFSSQVRELKQRVHVVVGTPGRILDHMDRGTI 140
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+LTE I YLVIDE D M+ G ++ NI++++ + R TM+ S E N+L
Sbjct: 141 NLTE---IKYLVIDEADEMMNMGFIEQVTNIINKL-----PEKRVTMLFSATMSEQVNLL 192
Query: 390 DRVTMTET 397
+ M E
Sbjct: 193 CKKYMKEA 200
Score = 89.7 bits (221), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 66/110 (60%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
P +++FCN+ ++V L LL S + +H M Q +RL+ + RF + L+ATD+
Sbjct: 240 PKSSIIFCNTRNNVDTLFNLLKDRGFSCISIHGGMLQEERLEAIRRFSRGEFTFLIATDI 299
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
A+RG+DI I HVI+Y +P E Y+HR GRT RA + G + + +++
Sbjct: 300 ASRGIDIADITHVINYDMPFEKENYVHRIGRTGRAESNGKAISFLTPNQL 349
Score = 50.4 bits (119), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+L++ PTREL +Q++ + + G++ V+ A + G + Q+R L + H++V TPG +
Sbjct: 73 SLVITPTRELCVQIKEDMSNIGRFKKVRCAAIFGKQTFSSQVRELKQRVHVVVGTPGRI 131
>gi|424869804|ref|ZP_18293485.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium R497]
gi|402935190|gb|EJX54460.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium R497]
Length = 501
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 140/468 (29%), Positives = 227/468 (48%), Gaps = 79/468 (16%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE +++++ + GF+ T IQS +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DE D M+ G +++ I+ +V RQT +FSAT+ ++KN + +K
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKN-IGVK----- 194
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFIL 1074
+K+P V + K + + + K EK D F +
Sbjct: 195 ------------------FMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDV 236
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q P T+VF + V L + L +H ++Q++R+ L F+ + IL+AT
Sbjct: 237 QTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVAT 296
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G+++ + +E+ + N
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIEN 356
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
+K++ P ++ + L ++E +E+K+ +N D +L
Sbjct: 357 LTKKRMTTLRPPTEKEAF-----KGQLGAAVEQIETKLAENGLDKYLQ 399
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 117/231 (50%), Gaps = 50/231 (21%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE +++++ + GF+ T IQS +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQSETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKNI 388
LV+DE D M+ G +++ I+ +V RQT++ S P +KNI
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKNI 191
Score = 91.7 bits (226), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K+P V + K + + + K EK D F +Q P T+VF + V L
Sbjct: 196 MKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L +H ++Q++R+ L F+ + IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 ARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G++V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ L++APTRELAIQ Q + G+ V+V V GG +Q+R L PHI+V T
Sbjct: 67 RHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGT 126
Query: 1411 PGAL 1414
PG +
Sbjct: 127 PGRM 130
Score = 41.6 bits (96), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA G+++ + +E+ + N +K++ P ++
Sbjct: 320 PESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAF----- 374
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAK 1325
+ L ++E +E+K+ +N D +L+ A K
Sbjct: 375 KGQLGAAVEQIETKLAENGLDKYLQTADK 403
>gi|298207628|ref|YP_003715807.1| ATP-dependent RNA helicase [Croceibacter atlanticus HTCC2559]
gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
HTCC2559]
Length = 424
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 131/416 (31%), Positives = 208/416 (50%), Gaps = 69/416 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
NI I+++L ++G++ PT IQ+ +P +L +D++G+A+TG+GKT AF IPI+ +
Sbjct: 6 LNIISPILKSLDEQGYEKPTSIQARSIP-LILKGEDVLGSAQTGTGKTGAFAIPIIQHLA 64
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
N LEN K + K+ +LI+ PTRELAIQ+
Sbjct: 65 NDLENA---------------------------------KGKRKILSLIVTPTRELAIQI 91
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ GKYT +K + GG+ Q L +L+ATPGRL + + G+ L +
Sbjct: 92 GENFSAYGKYTSLKSTVIFGGVPQRAQTNKLKSGVDVLIATPGRLLDLMDQGYISLKD-- 149
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ Y V+DE DRM++ G ++K +L T+ + RQ+ FSAT+ KN L L
Sbjct: 150 -VKYFVLDEADRMLDMGFIHDIKKLL-----TKLPKNRQSLFFSATMP---KNILTL--- 197
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
S ++ +K+PK V++ +T+ + K L +
Sbjct: 198 ---SNQI---------------LKNPKKVEVNPVSSTAETIQQYLYTTNKTNKGDLLLH- 238
Query: 1073 ILQHP--GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
IL+ P + LVF + R + L K +H + +Q QR K L F+D N +
Sbjct: 239 ILEDPKIDQVLVFSKTKHGADRTVRKLLKKKIKSAAIHGNKSQNQRQKALKAFKDGNIRV 298
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
++ATD+AARG+DI +E+VI+Y +P E Y+HR GR RA +G+ + + E +EI
Sbjct: 299 MVATDIAARGIDIDKLEYVINYDIPNEPETYVHRIGRCGRAGEDGIAISIGEPEEI 354
Score = 125 bits (314), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 44/234 (18%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
NI I+++L ++G++ PT IQ+ +P +L +D++G+A+TG+GKT AF IPI+ +
Sbjct: 6 LNIISPILKSLDEQGYEKPTSIQARSIP-LILKGEDVLGSAQTGTGKTGAFAIPIIQHLA 64
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
N LEN K + K+ +LI+ PTRELAIQ+
Sbjct: 65 NDLENA---------------------------------KGKRKILSLIVTPTRELAIQI 91
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ GKYT +K + GG+ Q L +L+ATPGRL + + G+ L +
Sbjct: 92 GENFSAYGKYTSLKSTVIFGGVPQRAQTNKLKSGVDVLIATPGRLLDLMDQGYISLKD-- 149
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
+ Y V+DE DRM++ G ++K +L T+ + RQ++ S P KNIL
Sbjct: 150 -VKYFVLDEADRMLDMGFIHDIKKLL-----TKLPKNRQSLFFSATMP--KNIL 195
Score = 90.1 bits (222), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP--GRTLVFCNSISSVKR 559
+K+PK V++ +T+ + K L + IL+ P + LVF + R
Sbjct: 202 LKNPKKVEVNPVSSTAETIQQYLYTTNKTNKGDLLLH-ILEDPKIDQVLVFSKTKHGADR 260
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
+ L K +H + +Q QR K L F+D N +++ATD+AARG+DI +E+VI+Y
Sbjct: 261 TVRKLLKKKIKSAAIHGNKSQNQRQKALKAFKDGNIRVMVATDIAARGIDIDKLEYVINY 320
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P E Y+HR GR RA +G+ + + E +EI
Sbjct: 321 DIPNEPETYVHRIGRCGRAGEDGIAISIGEPEEI 354
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+LI+ PTRELAIQ+ + GKYT +K + GG+ Q L +L+ATPG L
Sbjct: 78 SLIVTPTRELAIQIGENFSAYGKYTSLKSTVIFGGVPQRAQTNKLKSGVDVLIATPGRL 136
>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
Length = 524
Score = 199 bits (507), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (285), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++ +E+ I + D L +M + D E +I SR+ L S
Sbjct: 131 ---LDLIKRKALKLQDIETLI-LDEADEML-----NMGFLEDIEAIISRVPESRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|170590083|ref|XP_001899802.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158592721|gb|EDP31318.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 782
Score = 199 bits (507), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 137/469 (29%), Positives = 224/469 (47%), Gaps = 86/469 (18%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + T+ + + +KGF+ PT IQ +P ++ KDIV + TGSGKT AF IPIL
Sbjct: 33 WQTIGLDHTLFKGIQKKGFRQPTPIQRKAIP-IIIDGKDIVAMSRTGSGKTAAFVIPILQ 91
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN--KLYALILAPTRE 887
+ K R+ + ALI+ PTRE
Sbjct: 92 KL----------------------------------------KVRDMKGIRALIIEPTRE 111
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q + + G++T ++ A +VGG E+Q + +++ P I++ATPGRL I F
Sbjct: 112 LAMQTFTVVKELGRFTGLRCAVLVGGDRIEEQFQTVHEKPDIVIATPGRLLHVIVEMDFR 171
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L+ + +V DE DR+ E G +L +L R+ + RQT +FSATL S+
Sbjct: 172 LSA---VQVIVFDEADRLFEMGFAEQLHEVLKRL-----PENRQTLLFSATLPKSI---- 219
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067
K DP + RL DL EKI + L+ + C+ D+K +
Sbjct: 220 ------IAFSKAGLSDPVLVRL------------DLAEKI--SDKLSMMFLYCRTDDKLA 259
Query: 1068 YLYYF---ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
+ ++ +T+VFC ++ V+ L + + L++ ++ R N+ +FR
Sbjct: 260 AFLHLAREVVAANEQTIVFCATMKHVEYLAAVAGKAGIDCVVLYSQLDSVARNINIQKFR 319
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+ S+L+ TD+AARG+DIP ++ I+YH P ++++HR GR ARA G + L +D
Sbjct: 320 KKECSLLIVTDIAARGVDIPLLDVAINYHFPSKPKLFVHRVGRVARAGRSGKAISLFGAD 379
Query: 1185 EIPLYIKMFNSLEKKVDLP---DFPIDESVL-----SLIKKRIDLAKSI 1225
E+P I +F L + + DE+++ +I + ID K++
Sbjct: 380 EVPYVIDLFLFLNRPLKFATTSSVSSDEALIGIFPDGIIDREIDFLKNV 428
Score = 110 bits (276), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 51/234 (21%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + T+ + + +KGF+ PT IQ +P ++ KDIV + TGSGKT AF IPIL
Sbjct: 33 WQTIGLDHTLFKGIQKKGFRQPTPIQRKAIP-IIIDGKDIVAMSRTGSGKTAAFVIPILQ 91
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN--KLYALILAPTRE 270
+ K R+ + ALI+ PTRE
Sbjct: 92 KL----------------------------------------KVRDMKGIRALIIEPTRE 111
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q + + G++T ++ A +VGG E+Q + +++ P I++ATPGRL I F
Sbjct: 112 LAMQTFTVVKELGRFTGLRCAVLVGGDRIEEQFQTVHEKPDIVIATPGRLLHVIVEMDFR 171
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
L+ + +V DE DR+ E G +L +L R+ + RQT++ S P+
Sbjct: 172 LSA---VQVIVFDEADRLFEMGFAEQLHEVLKRL-----PENRQTLLFSATLPK 217
Score = 93.6 bits (231), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGRTLVFCNSISSVKRLTQLL 564
+DL EKI + L+ + C+ D+K + + ++ +T+VFC ++ V+ L +
Sbjct: 235 LDLAEKI--SDKLSMMFLYCRTDDKLAAFLHLAREVVAANEQTIVFCATMKHVEYLAAVA 292
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+ L++ ++ R N+ +FR + S+L+ TD+AARG+DIP ++ I+YH P
Sbjct: 293 GKAGIDCVVLYSQLDSVARNINIQKFRKKECSLLIVTDIAARGVDIPLLDVAINYHFPSK 352
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEIP 654
++++HR GR ARA G + L +DE+P
Sbjct: 353 PKLFVHRVGRVARAGRSGKAISLFGADEVP 382
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+Q + + G++T ++ A +VGG E+Q + +++ P I++ATPG L
Sbjct: 103 ALIIEPTRELAMQTFTVVKELGRFTGLRCAVLVGGDRIEEQFQTVHEKPDIVIATPGRL 161
Score = 40.0 bits (92), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 1184 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNW 1240
D + LY ++ +S+ + +++ F E L ++ I L+ I + +P +
Sbjct: 298 DCVVLYSQL-DSVARNINIQKFRKKECSLLIVTDIAARGVDIPLLDVAINYHFPSKPKLF 356
Query: 1241 LHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP---DFPIDESVL-----S 1292
+HR GR ARA G + L +DE+P I +F L + + DE+++
Sbjct: 357 VHRVGRVARAGRSGKAISLFGADEVPYVIDLFLFLNRPLKFATTSSVSSDEALIGIFPDG 416
Query: 1293 LIKKRIDLAKSI 1304
+I + ID K++
Sbjct: 417 IIDREIDFLKNV 428
>gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
Length = 473
Score = 199 bits (507), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 130/456 (28%), Positives = 219/456 (48%), Gaps = 90/456 (19%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M ++ N+ +++A+ + G++TPT IQ+ +P AL A KD++G A+TG+GKT +F +P
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHAL-AGKDVLGIAQTGTGKTASFTLP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
++T + +L+L PTR
Sbjct: 60 MIT------------------------------------ALARGRARARMPRSLVLCPTR 83
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA QV + KY + A ++GG+S ++Q ++++K +L+ATPGRL + + G
Sbjct: 84 ELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKGVDVLIATPGRLLDHFERGKL 143
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
LT+ + +V+DE DRM++ G P+++ I T RQT FSAT+
Sbjct: 144 ILTD---VKVMVVDEADRMLDMGFIPDIERIFSLTPFT-----RQTLFFSATMA------ 189
Query: 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 1066
P I+R+ + + +P+ V++ + ++T+ + + K +D
Sbjct: 190 -----------------PEIERITNTF-LSNPERVEVARQATASETIEQGAVFFKGSRRD 231
Query: 1067 SY------LYYFILQHPGR----TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
+ I+ G +VFCN V + + L + P+H ++Q QR
Sbjct: 232 REATEKRDVLRQIIDREGEKCTNAIVFCNRKVDVDIVAKSLKKHGYNAEPIHGDLDQSQR 291
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
+ LD FRD + +L+A+DVAARGLD+P + HV ++ VP +E Y+HR GRT RA EG
Sbjct: 292 TRTLDGFRDGSIRLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGK 351
Query: 1177 TLVLIESDEIPLYIKMFNSLEK-------KVDLPDF 1205
++ P K F +EK +V+LP+
Sbjct: 352 AFTIVS----PRDEKNFEDVEKLLQKEIPRVELPNM 383
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 140/285 (49%), Gaps = 51/285 (17%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M ++ N+ +++A+ + G++TPT IQ+ +P AL A KD++G A+TG+GKT +F +P
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHAL-AGKDVLGIAQTGTGKTASFTLP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
++T + +L+L PTR
Sbjct: 60 MIT------------------------------------ALARGRARARMPRSLVLCPTR 83
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA QV + KY + A ++GG+S ++Q ++++K +L+ATPGRL + + G
Sbjct: 84 ELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKGVDVLIATPGRLLDHFERGKL 143
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKNI 388
LT+ + +V+DE DRM++ G P+++ I T RQT+ S PE
Sbjct: 144 ILTD---VKVMVVDEADRMLDMGFIPDIERIFSLTPFT-----RQTLFFSATMAPE---- 191
Query: 389 LDRVTMTETSQPRQTFVF-SATLTHSLKNSLNLKKGQSKSKKVSK 432
++R+T T S P + V AT + +++ KG + ++ ++
Sbjct: 192 IERITNTFLSNPERVEVARQATASETIEQGAVFFKGSRRDREATE 236
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 12/170 (7%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY------LYYFILQ 542
T+ EI+ + N + +P+ V++ + ++T+ + + K +D + I+
Sbjct: 187 TMAPEIERITNTFLSNPERVEVARQATASETIEQGAVFFKGSRRDREATEKRDVLRQIID 246
Query: 543 HPGR----TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598
G +VFCN V + + L + P+H ++Q QR + LD FRD + +L
Sbjct: 247 REGEKCTNAIVFCNRKVDVDIVAKSLKKHGYNAEPIHGDLDQSQRTRTLDGFRDGSIRLL 306
Query: 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
+A+DVAARGLD+P + HV ++ VP +E Y+HR GRT RA EG ++
Sbjct: 307 IASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIV 356
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+L+L PTRELA QV + KY + A ++GG+S ++Q ++++K +L+ATPG L
Sbjct: 76 SLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKGVDVLIATPGRL 134
>gi|170090862|ref|XP_001876653.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648146|gb|EDR12389.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 422
Score = 199 bits (506), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 133/426 (31%), Positives = 206/426 (48%), Gaps = 72/426 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ I +++ AL KTPT++Q+ +P LLA D +G A+TGSGKT+AF +PIL
Sbjct: 2 FASLGISDSLQSALTSMSIKTPTEVQAACIPP-LLAGTDCIGNAKTGSGKTIAFALPILQ 60
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ L +P +YAL+L PTRELA
Sbjct: 61 RL---LADP------------------------------------YGIYALVLTPTRELA 81
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
Q+ + G ++ A +VGGM Q L PHI++ATPGRL + ++
Sbjct: 82 FQISEQFVVLGASLNLRTAVIVGGMDMMAQALELGNRPHIVIATPGRLVDHLRSSSGEW- 140
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+L ++ +LV+DE DR++ PEL ++ + + Q RQT +F+ATLT S+++ +
Sbjct: 141 DLSRVRFLVLDEADRLLTRTFSPELSHLFNVL-----PQDRQTCLFTATLTPSIESLADA 195
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
K K P + R+ + +I TL + IL +++YL
Sbjct: 196 TARPGKQK------PFVHRMNE----------RQVRRIETVSTLKQHYILVPSHVRETYL 239
Query: 1070 YYFI---------LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
YY + L+ P T++FC + LT +L L LH+ + QR+RL +L
Sbjct: 240 YYLLRNPPDDDDELEQPPPTIIFCARPRTAAYLTLVLKSLSIRSTALHSRLTQRERLSSL 299
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
FR +L++TDV +RGLDI + VI++ +P +E Y HR GRTARA G+ +
Sbjct: 300 SLFRASVVPVLVSTDVGSRGLDIEDVAMVINWDMPEEAEEYTHRVGRTARAGRGGVAISF 359
Query: 1181 I-ESDE 1185
+ E DE
Sbjct: 360 VTERDE 365
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 138/501 (27%), Positives = 211/501 (42%), Gaps = 138/501 (27%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ I +++ AL KTPT++Q+ +P LLA D +G A+TGSGKT+AF +PIL
Sbjct: 2 FASLGISDSLQSALTSMSIKTPTEVQAACIPP-LLAGTDCIGNAKTGSGKTIAFALPILQ 60
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ L +P +YAL+L PTRELA
Sbjct: 61 RL---LADP------------------------------------YGIYALVLTPTRELA 81
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
Q+ + G ++ A +VGGM Q L PHI++ATPGRL + ++
Sbjct: 82 FQISEQFVVLGASLNLRTAVIVGGMDMMAQALELGNRPHIVIATPGRLVDHLRSSSGEW- 140
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+L ++ +LV+DE DR++ PEL ++ N+L
Sbjct: 141 DLSRVRFLVLDEADRLLTRTFSPELSHLF-------------------------NVL--- 172
Query: 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 452
Q RQT +F+ATLT S+++ + K K P + R+ +
Sbjct: 173 -----PQDRQTCLFTATLTPSIESLADATARPGKQK------PFVHRMNE---------- 211
Query: 453 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
+I TL + IL +++YLYY + P
Sbjct: 212 RQVRRIETVSTLKQHYILVPSHVRETYLYYLLRNPP------------------------ 247
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
D+ D L+ P T++FC + LT +L L
Sbjct: 248 -----------------DDDDE------LEQPPPTIIFCARPRTAAYLTLVLKSLSIRST 284
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
LH+ + QR+RL +L FR +L++TDV +RGLDI + VI++ +P +E Y HR
Sbjct: 285 ALHSRLTQRERLSSLSLFRASVVPVLVSTDVGSRGLDIEDVAMVINWDMPEEAEEYTHRV 344
Query: 633 GRTARANNEGLTVVLI-ESDE 652
GRTARA G+ + + E DE
Sbjct: 345 GRTARAGRGGVAISFVTERDE 365
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y AL+L PTRELA Q+ + G ++ A +VGGM Q L PHI++ATP
Sbjct: 67 YGIYALVLTPTRELAFQISEQFVVLGASLNLRTAVIVGGMDMMAQALELGNRPHIVIATP 126
Query: 1412 GAL 1414
G L
Sbjct: 127 GRL 129
>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M334]
gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M334]
Length = 524
Score = 199 bits (506), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIERAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (285), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIERAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++ +E+ I + D L +M + D E +I SR+ L S
Sbjct: 131 ---LDLIKRKALKLQDIETLI-LDEADEML-----NMGFLEDIEAIISRVPESRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|404370145|ref|ZP_10975472.1| hypothetical protein CSBG_02551 [Clostridium sp. 7_2_43FAA]
gi|226913724|gb|EEH98925.1| hypothetical protein CSBG_02551 [Clostridium sp. 7_2_43FAA]
Length = 481
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/427 (29%), Positives = 215/427 (50%), Gaps = 83/427 (19%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+++ ++ N+ E I++AL GF+ P+++Q V+P +L +KD+V ++TGSGKT +FG
Sbjct: 1 MKIDKFENMNLSEEILKALKNLGFEKPSEVQQEVIP-YILDKKDLVVKSQTGSGKTASFG 59
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IP+ E V NK+ ALIL P
Sbjct: 60 IPL---------------------------------------CELVNVEENKVKALILVP 80
Query: 885 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
TRELAIQV+ I + G+ V+ A + G +Q+R L + HI+ TPGR+ + I+ G
Sbjct: 81 TRELAIQVKEDISNIGRLKKVRCAAIFGKQPFNEQIRELKQRVHIVCGTPGRVIDHIERG 140
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004
+ + + I++++IDE D+M+ G ++ ++LD++ Q + T +FSAT+
Sbjct: 141 NLDIND---IDFVIIDEADKMLNMGFIDQITDVLDKL-----PQSKNTALFSATIP---- 188
Query: 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKH 1062
K ++ L + + +P ++++ K+ ++E
Sbjct: 189 ----------------------KEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDR 226
Query: 1063 DEKDSY----LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
+EK Y LY F + ++FCN+ SV+ L+ LL K S LH M+Q+ RL
Sbjct: 227 EEKFKYLLKSLYAFTDES---AIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLA 283
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
++ F+++ +L+ATDVAARG+ I I +V +Y VP E Y+HR GR+ R + +GL +
Sbjct: 284 TMENFKNKEFKVLVATDVAARGIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAI 343
Query: 1179 VLIESDE 1185
L+ E
Sbjct: 344 SLVSKGE 350
Score = 118 bits (295), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 48/236 (20%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+++ ++ N+ E I++AL GF+ P+++Q V+P +L +KD+V ++TGSGKT +FG
Sbjct: 1 MKIDKFENMNLSEEILKALKNLGFEKPSEVQQEVIP-YILDKKDLVVKSQTGSGKTASFG 59
Query: 208 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267
IP+ E V NK+ ALIL P
Sbjct: 60 IPL---------------------------------------CELVNVEENKVKALILVP 80
Query: 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
TRELAIQV+ I + G+ V+ A + G +Q+R L + HI+ TPGR+ + I+ G
Sbjct: 81 TRELAIQVKEDISNIGRLKKVRCAAIFGKQPFNEQIRELKQRVHIVCGTPGRVIDHIERG 140
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
+ + + I++++IDE D+M+ G ++ ++LD++ Q + T + S P
Sbjct: 141 NLDIND---IDFVIIDEADKMLNMGFIDQITDVLDKL-----PQSKNTALFSATIP 188
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 9/168 (5%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL----YYFILQHP 544
T+ +EI+ L + + +P ++++ K+ ++E +EK YL Y F +
Sbjct: 186 TIPKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLLKSLYAFTDES- 244
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
++FCN+ SV+ L+ LL K S LH M+Q+ RL ++ F+++ +L+ATDVA
Sbjct: 245 --AIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVATDVA 302
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
ARG+ I I +V +Y VP E Y+HR GR+ R + +GL + L+ E
Sbjct: 303 ARGIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAISLVSKGE 350
Score = 54.3 bits (129), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL PTRELAIQV+ I + G+ V+ A + G +Q+R L + HI+ TPG
Sbjct: 75 ALILVPTRELAIQVKEDISNIGRLKKVRCAAIFGKQPFNEQIRELKQRVHIVCGTPG 131
>gi|84999696|ref|XP_954569.1| ATP-dependent RNA helicase [Theileria annulata]
gi|65305567|emb|CAI73892.1| ATP-dependent RNA helicase, putative [Theileria annulata]
Length = 643
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 147/548 (26%), Positives = 263/548 (47%), Gaps = 115/548 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ IP+ I+ LY+ F +PT IQ + + +++ + ++ ++ETGSGKTL F +PI+ ++
Sbjct: 106 YTIPQQILVNLYKNNFNSPTPIQRLTLVPSIIKKTHVLISSETGSGKTLCFVLPIVISLL 165
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
++ K K+ +L++ PTRELA+QV
Sbjct: 166 SE-------------------------------------KIDKKIESLVILPTRELAVQV 188
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ + ++V ++GG+S +KQ R+L K P I+VATPGRL +F+ G L L+
Sbjct: 189 KKIFFMILEGIDIRVLSIIGGISVQKQERLLKKDPSIVVATPGRLHDFVNDG--KLRGLF 246
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
++ +LV+DE D+ E + E++ I+ V + Q F+ SAT+ + +N ++L K
Sbjct: 247 QLRHLVLDEVDKFFEDNSYKEVQLIVKYVKRAKI----QCFLSSATILNMKENLISLFKL 302
Query: 1013 QSKSKK---VSKGDPSI-------------KRL--QDLLNIKSP-----KIVDLTEKIGI 1049
+ S + D + K+L + L + P K++D +K +
Sbjct: 303 LNISNPTVCICSKDNQLSIPYDQLSNKLLYKKLFTKSLTQVSIPENLTFKLIDSEDKYKV 362
Query: 1050 TKTLTESKILCKHDEKDSYLY-YFILQHPGRTLVFCNSISSVKRLTQLLTML-------- 1100
T+ + +L YL Y + ++F N+I+ V RL LL+++
Sbjct: 363 TQITILNTVLFPEVRLIGYLVDYLCNVESKKCIIFVNTITYVYRLESLLSLIFWKDVHEH 422
Query: 1101 -----KCSPLP----------LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
C+ +H+ + Q+QRL L++F SIL+ TDVA+RGLDIP
Sbjct: 423 RLKRKYCTTFDVNTKLDFVSGIHSRLKQKQRLNRLEKFSSNKKSILICTDVASRGLDIPN 482
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD---- 1201
I+ VIH+H P+ +++HRSGRTAR ++G+++ + L+ K+F + K +D
Sbjct: 483 IDIVIHFHPPKDKSLFLHRSGRTARLKSDGVSVCFCSPNNRELWKKLFTEINKNIDKIDQ 542
Query: 1202 LPDFPIDE--------------SVLSLI------KKRIDLAKSIEYLESKIKKNRP-DNW 1240
+ + P D+ ++S++ K + LA++IE E ++ K + +W
Sbjct: 543 IEEIPRDKFLSMFQLVALKLTIQIISIVHDDTGLKDLLQLAETIEKSEFQMSKEKSVQSW 602
Query: 1241 LHRSGRTA 1248
+ R A
Sbjct: 603 FQNAARKA 610
Score = 184 bits (466), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 135/516 (26%), Positives = 238/516 (46%), Gaps = 128/516 (24%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ IP+ I+ LY+ F +PT IQ + + +++ + ++ ++ETGSGKTL F +PI+ ++
Sbjct: 106 YTIPQQILVNLYKNNFNSPTPIQRLTLVPSIIKKTHVLISSETGSGKTLCFVLPIVISLL 165
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
++ K K+ +L++ PTRELA+QV
Sbjct: 166 SE-------------------------------------KIDKKIESLVILPTRELAVQV 188
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ + ++V ++GG+S +KQ R+L K P I+VATPGRL +F+ G L L+
Sbjct: 189 KKIFFMILEGIDIRVLSIIGGISVQKQERLLKKDPSIVVATPGRLHDFVNDGK--LRGLF 246
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
++ +LV+DE D+ E + E++ I+ V +
Sbjct: 247 QLRHLVLDEVDKFFEDNSYKEVQLIVKYVKRAKI-------------------------- 280
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
Q F+ SAT+ + +N ++L K LLNI +P + +
Sbjct: 281 ------QCFLSSATILNMKENLISLFK--------------------LLNISNPTVCICS 314
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
+ ++++ +D+ + L Y L T ++L + K++D +K
Sbjct: 315 K---------DNQLSIPYDQLSNKLLYKKLFTKSLTQVSIPENL----TFKLIDSEDKYK 361
Query: 516 ITKTLTESKILCKHDEKDSYLY-YFILQHPGRTLVFCNSISSVKRLTQLLTML------- 567
+T+ + +L YL Y + ++F N+I+ V RL LL+++
Sbjct: 362 VTQITILNTVLFPEVRLIGYLVDYLCNVESKKCIIFVNTITYVYRLESLLSLIFWKDVHE 421
Query: 568 ------KCSPLP----------LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 611
C+ +H+ + Q+QRL L++F SIL+ TDVA+RGLDIP
Sbjct: 422 HRLKRKYCTTFDVNTKLDFVSGIHSRLKQKQRLNRLEKFSSNKKSILICTDVASRGLDIP 481
Query: 612 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
I+ VIH+H P+ +++HRSGRTAR ++G++V
Sbjct: 482 NIDIVIHFHPPKDKSLFLHRSGRTARLKSDGVSVCF 517
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 1355 DALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
++L++ PTRELA+QV+ + ++V ++GG+S +KQ R+L K P I+VATPG L
Sbjct: 174 ESLVILPTRELAVQVKKIFFMILEGIDIRVLSIIGGISVQKQERLLKKDPSIVVATPGRL 233
Score = 45.8 bits (107), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 25/120 (20%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD----LPDFPIDE------- 1288
+LHRSGRTAR ++G+++ + L+ K+F + K +D + + P D+
Sbjct: 498 FLHRSGRTARLKSDGVSVCFCSPNNRELWKKLFTEINKNIDKIDQIEEIPRDKFLSMFQL 557
Query: 1289 -------SVLSLI------KKRIDLAKSIEYLESKIKKNRP-DNWLEKAAKDMDIIIDDE 1334
++S++ K + LA++IE E ++ K + +W + AA+ DI++ D+
Sbjct: 558 VALKLTIQIISIVHDDTGLKDLLQLAETIEKSEFQMSKEKSVQSWFQNAARKADIMLSDD 617
>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
Length = 523
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (284), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.4 bits (241), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|385262989|ref|ZP_10041086.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
gi|385188964|gb|EIF36434.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
Length = 525
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIHTEDAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (285), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIHTEDAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 96.7 bits (239), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|347758173|ref|YP_004865735.1| DEAD/DEAH box helicase [Micavibrio aeruginosavorus ARL-13]
gi|347590691|gb|AEP09733.1| DEAD/DEAH box helicase family protein [Micavibrio aeruginosavorus
ARL-13]
Length = 649
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/413 (32%), Positives = 206/413 (49%), Gaps = 74/413 (17%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+P+ ++RAL F+TPT IQ+ +P AL A DI+G+A+TG+GKT AF IPI+ ++
Sbjct: 2 GLPDALVRALDYMKFETPTPIQAQAIPLAL-AGNDILGSAQTGTGKTGAFAIPIIAKLI- 59
Query: 834 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
EF ALI+ PTRELA+QV
Sbjct: 60 ----------------------------------EFPDSA-----ALIMTPTRELAVQVA 80
Query: 894 NHILDA-GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ + G + +A ++GG +KQLR L P I++ TPGR+ + + G +
Sbjct: 81 DIVRKMLGSQPSMTLAVLIGGEPMDKQLRQLRTHPRIIIGTPGRINDHMLRG---TVKFD 137
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
N+LV+DETDRM++ G +++ I+ TM + RQT +FSAT+
Sbjct: 138 NANFLVLDETDRMLDMGFGIQIEKII--RTMPKE---RQTMMFSATIP------------ 180
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
P I +L +K+P+ V + E+ + + + H EK + L
Sbjct: 181 -----------PYISKLSAQY-LKNPQRVSIGEESTAAPKIKQELVHTNHSEKYNALVGQ 228
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
+ Q G ++F + RL + LT LH + Q +R + + FRD+ IL+
Sbjct: 229 LDQREGSVIIFVKTKHGADRLARKLTQDDFRSEALHGDLRQNKRDRVIRSFRDKKYRILV 288
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
ATDVAARGLDIP IEHV++Y +P+ +E YIHR GRT RA EG + L+ S++
Sbjct: 289 ATDVAARGLDIPHIEHVVNYDLPQCAEDYIHRIGRTGRAGAEGNAVCLLTSED 341
Score = 109 bits (272), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 50/228 (21%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+P+ ++RAL F+TPT IQ+ +P AL A DI+G+A+TG+GKT AF IPI+ ++
Sbjct: 2 GLPDALVRALDYMKFETPTPIQAQAIPLAL-AGNDILGSAQTGTGKTGAFAIPIIAKLI- 59
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
EF ALI+ PTRELA+QV
Sbjct: 60 ----------------------------------EFPDSA-----ALIMTPTRELAVQVA 80
Query: 277 NHILDA-GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ + G + +A ++GG +KQLR L P I++ TPGR+ + + G +
Sbjct: 81 DIVRKMLGSQPSMTLAVLIGGEPMDKQLRQLRTHPRIIIGTPGRINDHMLRG---TVKFD 137
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
N+LV+DETDRM++ G +++ I+ TM + RQTM+ S P
Sbjct: 138 NANFLVLDETDRMLDMGFGIQIEKII--RTMPKE---RQTMMFSATIP 180
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 85/151 (56%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLT 561
+K+P+ V + E+ + + + H EK + L + Q G ++F + RL
Sbjct: 191 LKNPQRVSIGEESTAAPKIKQELVHTNHSEKYNALVGQLDQREGSVIIFVKTKHGADRLA 250
Query: 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621
+ LT LH + Q +R + + FRD+ IL+ATDVAARGLDIP IEHV++Y +
Sbjct: 251 RKLTQDDFRSEALHGDLRQNKRDRVIRSFRDKKYRILVATDVAARGLDIPHIEHVVNYDL 310
Query: 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
P+ +E YIHR GRT RA EG V L+ S++
Sbjct: 311 PQCAEDYIHRIGRTGRAGAEGNAVCLLTSED 341
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDA-GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV + + G + +A ++GG +KQLR L P I++ TPG +
Sbjct: 66 ALIMTPTRELAVQVADIVRKMLGSQPSMTLAVLIGGEPMDKQLRQLRTHPRIIIGTPGRI 125
Query: 1415 S 1415
+
Sbjct: 126 N 126
>gi|418966288|ref|ZP_13518034.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp.
constellatus SK53]
gi|383340413|gb|EID18712.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp.
constellatus SK53]
Length = 514
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 213/433 (49%), Gaps = 77/433 (17%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIDKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
L I E+PT + ALI+APTRE
Sbjct: 60 LEKI--DTEDPT-------------------------------------VQALIIAPTRE 80
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007
L + L++DE D M+ G ++++I+ RV + RQT +FSAT+ ++K +
Sbjct: 141 LNH---VETLILDEADEMLNMGFLEDIESIISRV-----PEDRQTLLFSATMPDAIKQ-I 191
Query: 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-D 1066
+K +K P V + K T+ + + I K +EK D
Sbjct: 192 GVK-----------------------FMKEPTHVKIAAKELTTELVDQYYIRVKENEKFD 228
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ ++ P ++VF + V LT+ L + +H ++Q +RL+ L F++
Sbjct: 229 TMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNG 288
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
N +L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Query: 1187 PLYIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 349 G-YLQIIENLTKK 360
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 113/234 (48%), Gaps = 51/234 (21%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+KFN + ++ + + GF + IQ +P A+ A KD++G A+TG+GKT AFG P
Sbjct: 1 MKFNELHLSAELLAEIDKAGFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPT 59
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
L I E+PT + ALI+APTRE
Sbjct: 60 LEKI--DTEDPT-------------------------------------VQALIIAPTRE 80
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+
Sbjct: 81 LAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALK 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
L + L++DE D M+ G ++++I+ RV + RQT++ S P+
Sbjct: 141 LNH---VETLILDEADEMLNMGFLEDIESIISRV-----PEDRQTLLFSATMPD 186
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 196 MKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|156064101|ref|XP_001597972.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980]
gi|160380631|sp|A7E436.1|DBP8_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp8
gi|154690920|gb|EDN90658.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 540
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 219/462 (47%), Gaps = 81/462 (17%)
Query: 752 LLEVDTSNNEDMFV---QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
LLE NN + + ++ ++ +L K PT IQ +P L R D
Sbjct: 92 LLEPKNFNNGAVLAPTDAQTTFAALDVKPWLVASLGAMAIKRPTGIQKGCIPEILKGR-D 150
Query: 809 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868
+G + TGSGKT+AF +PIL ++ AE+
Sbjct: 151 CIGGSRTGSGKTVAFAVPIL--------------------QKWAEDPF------------ 178
Query: 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928
++AL+L PTRELA+Q+ +K + GG Q L + PH
Sbjct: 179 -------GIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQRPH 231
Query: 929 ILVATPGRLWEFIQL-GHFHLTELYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTET 986
+++ATPGRL + I+ G + L ++ +V+DE DR++ SG L ++ + +++
Sbjct: 232 VVIATPGRLADHIRTSGEDTVCALRRVRMVVLDEADRLLASGSVGSMLPDVEECLSLLPP 291
Query: 987 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL-LNIKSPKI----V 1041
RQT +F+AT+T P ++ L+D+ + P + V
Sbjct: 292 PSERQTLLFTATVT-----------------------PEVRALKDMPRTLGKPPVFVCEV 328
Query: 1042 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLT 1098
D T+ + I +L + + ++ YL+ F+L P ++FCN ++ LT LL
Sbjct: 329 D-TQALAIPSSLNQMHLQVPVTHREHYLHMFLLTEKNLPKSIVIFCNRTATADYLTHLLR 387
Query: 1099 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158
+L+ LH+ + QRQR+ NL RFR IL+ATDVAARGLDIP + VI+Y VPR
Sbjct: 388 LLEHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDVPRDP 447
Query: 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
+ YIHR GRTARA +G + + ++ L + ++EK+V
Sbjct: 448 DDYIHRVGRTARAGRKGEAVTFVGQRDVQLIL----AIEKRV 485
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 140/530 (26%), Positives = 216/530 (40%), Gaps = 153/530 (28%)
Query: 135 LLEVDTSNNEDMFV---QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
LLE NN + + ++ ++ +L K PT IQ +P L R D
Sbjct: 92 LLEPKNFNNGAVLAPTDAQTTFAALDVKPWLVASLGAMAIKRPTGIQKGCIPEILKGR-D 150
Query: 192 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251
+G + TGSGKT+AF +PIL ++ AE+
Sbjct: 151 CIGGSRTGSGKTVAFAVPIL--------------------QKWAEDPF------------ 178
Query: 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311
++AL+L PTRELA+Q+ +K + GG Q L + PH
Sbjct: 179 -------GIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQRPH 231
Query: 312 ILVATPGRLWEFIQL-GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
+++ATPGRL + I+ G + L ++ +V+DE DR++ SG +
Sbjct: 232 VVIATPGRLADHIRTSGEDTVCALRRVRMVVLDEADRLLASGSVGSM------------- 278
Query: 371 QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 430
P+++ L ++ RQT +F+AT+T
Sbjct: 279 -----------LPDVEECL---SLLPPPSERQTLLFTATVT------------------- 305
Query: 431 SKGDPSIKRLQDL-LNIKSPKI----VDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 485
P ++ L+D+ + P + VD T+ + I +L + + ++ YL+ F+
Sbjct: 306 ----PEVRALKDMPRTLGKPPVFVCEVD-TQALAIPSSLNQMHLQVPVTHREHYLHMFL- 359
Query: 486 QHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 545
LTEK P
Sbjct: 360 ------------------------LTEK----------------------------NLPK 367
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
++FCN ++ LT LL +L+ LH+ + QRQR+ NL RFR IL+ATDVAA
Sbjct: 368 SIVIFCNRTATADYLTHLLRLLEHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAA 427
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
RGLDIP + VI+Y VPR + YIHR GRTARA +G V + ++ L
Sbjct: 428 RGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRKGEAVTFVGQRDVQL 477
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA+Q+ +K + GG Q L + PH+++ATPG L+
Sbjct: 182 ALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQRPHVVIATPGRLA 241
>gi|337281654|ref|YP_004621125.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
15912]
gi|419799506|ref|ZP_14324847.1| DEAD/DEAH box helicase [Streptococcus parasanguinis F0449]
gi|335369247|gb|AEH55197.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
15912]
gi|385697930|gb|EIG28331.1| DEAD/DEAH box helicase [Streptococcus parasanguinis F0449]
Length = 523
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 209/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLE 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I + NT + AL++APTRELA
Sbjct: 62 KI------------------------------DVDNTV---------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 143 H---IETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPEA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P ++F + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIIFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNV 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 116 bits (290), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 122/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLE 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I + NT + AL++APTRELA
Sbjct: 62 KI------------------------------DVDNTV---------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLN 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
I L++DE D M+ G +++ I+ RV T RQT++ S PE + R+
Sbjct: 143 H---IETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPE---AIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTDL 213
Score = 95.9 bits (237), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K EK D+ ++ P ++F + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIIFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNVDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKTGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K + ++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLNHIETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|163759551|ref|ZP_02166636.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
gi|162283148|gb|EDQ33434.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
Length = 509
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 202/420 (48%), Gaps = 75/420 (17%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + + + ++ A+ G+ TPT IQ+ +P AL R+DI+G A+TG+GKT +F +P
Sbjct: 1 MTTFADLGLSQKVLSAVTDAGYTTPTPIQAGAIPPAL-ERRDILGIAQTGTGKTASFVLP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-YALILAPT 885
+LT +LE + R ++ LIL PT
Sbjct: 60 MLT-------------------------MLER------------GRARARMPRTLILEPT 82
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
RELA QV + GK + + ++GG+S E+Q R L + +L+ATPGRL + + G
Sbjct: 83 RELAAQVHENFEKYGKNHRLNIVLLIGGVSFEEQYRKLERGADVLIATPGRLLDHTERGK 142
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+T + LVIDE DRM++ G P+++ I+ + T RQT FSAT+
Sbjct: 143 LLMT---GVELLVIDEADRMLDMGFIPDIERIVKLIPFT-----RQTLFFSATMP----- 189
Query: 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC--KHD 1063
P I++L D +++P +++ T+T+ + C K
Sbjct: 190 ------------------PEIQKLADKF-LQNPARIEVAPPSSTAATVTQKLVACSGKDF 230
Query: 1064 EKDSYLYYFILQHPGRT--LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
EK L I T ++FCN V L + L S LH M+QR R L
Sbjct: 231 EKRERLRDLIRSQTDLTNAIIFCNRKKDVADLYKSLEKHGFSVGALHGDMDQRSRTNMLQ 290
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
F+D ++L+A+DVAARGLDIP + HV ++ VP +E Y+HR GRT RA EG L+
Sbjct: 291 GFKDNEITLLVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLV 350
Score = 116 bits (290), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 81/344 (23%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + + + ++ A+ G+ TPT IQ+ +P AL R+DI+G A+TG+GKT +F +P
Sbjct: 1 MTTFADLGLSQKVLSAVTDAGYTTPTPIQAGAIPPAL-ERRDILGIAQTGTGKTASFVLP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL-YALILAPT 268
+LT +LE + R ++ LIL PT
Sbjct: 60 MLT-------------------------MLER------------GRARARMPRTLILEPT 82
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
RELA QV + GK + + ++GG+S E+Q R L + +L+ATPGRL + + G
Sbjct: 83 RELAAQVHENFEKYGKNHRLNIVLLIGGVSFEEQYRKLERGADVLIATPGRLLDHTERGK 142
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKN 387
+T + LVIDE DRM++ G P+++ I+ + T RQT+ S PE++
Sbjct: 143 LLMT---GVELLVIDEADRMLDMGFIPDIERIVKLIPFT-----RQTLFFSATMPPEIQK 194
Query: 388 ILDRV----TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL 443
+ D+ E + P T +AT+T L G+ K+ +RL+DL
Sbjct: 195 LADKFLQNPARIEVAPPSST---AATVTQKLVAC----SGKDFEKR--------ERLRDL 239
Query: 444 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 487
+ ++ DLT I I C + + LY + +H
Sbjct: 240 IRSQT----DLTNAI----------IFCNRKKDVADLYKSLEKH 269
Score = 98.2 bits (243), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILC--KHDEKDSYLYYFILQHPGR 546
T+ EIQ L + +++P +++ T+T+ + C K EK L I
Sbjct: 187 TMPPEIQKLADKFLQNPARIEVAPPSSTAATVTQKLVACSGKDFEKRERLRDLIRSQTDL 246
Query: 547 T--LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
T ++FCN V L + L S LH M+QR R L F+D ++L+A+DVA
Sbjct: 247 TNAIIFCNRKKDVADLYKSLEKHGFSVGALHGDMDQRSRTNMLQGFKDNEITLLVASDVA 306
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
ARGLDIP + HV ++ VP +E Y+HR GRT RA EG L+
Sbjct: 307 ARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLV 350
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL PTRELA QV + GK + + ++GG+S E+Q R L + +L+ATPG L
Sbjct: 77 LILEPTRELAAQVHENFEKYGKNHRLNIVLLIGGVSFEEQYRKLERGADVLIATPGRL 134
>gi|167384217|ref|XP_001736854.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
gi|165900561|gb|EDR26857.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar SAW760]
Length = 432
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/429 (31%), Positives = 214/429 (49%), Gaps = 68/429 (15%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
IPE +++ + G+K PTKIQ +P AL +KDI+G A+TGSGKT +F +P++ ++N
Sbjct: 17 IPE-VLKVVEYLGYKKPTKIQENSIPVAL-QKKDIIGIAQTGSGKTASFLLPMIQHLLN- 73
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
VK+ Y +I+ PTRELA QV
Sbjct: 74 -----------------------------------VKEKNRAFYCIIIEPTRELAAQVVE 98
Query: 895 HILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
+ + GK P ++C+ VGGM KQ L K PH++V TPGR+ I+ + K
Sbjct: 99 VLDEIGKALPGLMSCLLVGGMDVMKQSVQLAKRPHVIVGTPGRIVYHIKNTKGVEESIQK 158
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 1013
+ +LVIDE D+++E E+ +++++ SQ R T +FSAT++
Sbjct: 159 VKFLVIDEADKLLEMDFANEIDYLIEKLP----SQ-RTTMLFSATMS------------- 200
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073
+++LQ KI + +K TL + +D YL +
Sbjct: 201 ----------TKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIPFKYRDGYLLSIL 250
Query: 1074 LQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
+ G++++ F S +L +L L + +PLH M+Q++RL L++F+ IL+
Sbjct: 251 KETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGKRGILV 310
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDIP ++ VI+Y P + YIHR GRTARA G + L+ I LY ++
Sbjct: 311 ATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIELYQRI 370
Query: 1193 FNSLEKKVD 1201
+EKK++
Sbjct: 371 ETMIEKKLN 379
Score = 104 bits (259), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 44/239 (18%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
IPE +++ + G+K PTKIQ +P AL +KDI+G A+TGSGKT +F +P++ ++N
Sbjct: 17 IPE-VLKVVEYLGYKKPTKIQENSIPVAL-QKKDIIGIAQTGSGKTASFLLPMIQHLLN- 73
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
VK+ Y +I+ PTRELA QV
Sbjct: 74 -----------------------------------VKEKNRAFYCIIIEPTRELAAQVVE 98
Query: 278 HILDAGKYTPVKVAC-VVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
+ + GK P ++C +VGGM KQ L K PH++V TPGR+ I+ + K
Sbjct: 99 VLDEIGKALPGLMSCLLVGGMDVMKQSVQLAKRPHVIVGTPGRIVYHIKNTKGVEESIQK 158
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ +LVIDE D+++E E+ +++++ SQ R TM+ S L R ++T
Sbjct: 159 VKFLVIDEADKLLEMDFANEIDYLIEKL----PSQ-RTTMLFSATMSTKVEKLQRASLT 212
Score = 104 bits (259), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 7/166 (4%)
Query: 519 TLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHAS 577
TL + +D YL + + G++++ F S +L +L L + +PLH
Sbjct: 229 TLRQEYCFIPFKYRDGYLLSILKETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGK 288
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
M+Q++RL L++F+ IL+ATDVA+RGLDIP ++ VI+Y P + YIHR GRTAR
Sbjct: 289 MSQQKRLIALEKFKSGKRGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTAR 348
Query: 638 ANNEGLTVVLIESDEIPLKTKF------NLQEEENNEEEERAEADK 677
A G + L+ I L + L E + NE+E A + K
Sbjct: 349 AGKSGYAITLVTQYSIELYQRIETMIEKKLNEYKVNEKEAIAYSQK 394
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATP 1411
++ +I+ PTRELA QV + + GK P ++C+ VGGM KQ L K PH++V TP
Sbjct: 80 AFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSVQLAKRPHVIVGTP 139
Query: 1412 GALSLKRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
G + + I K +E K+K + D LE MD + + LI+ + R
Sbjct: 140 GRI-VYHIKNTKGVEESIQKVKFLVIDEADKLLE-----MDFANEIDYLIEKLPSQRTTM 193
Query: 1469 LMSKALVSKRKELQ 1482
L S + +K ++LQ
Sbjct: 194 LFSATMSTKVEKLQ 207
Score = 41.6 bits (96), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1280
P +++HR GRTARA G + L+ I LY ++ +EKK++
Sbjct: 336 PKDYIHRVGRTARAGKSGYAITLVTQYSIELYQRIETMIEKKLN 379
>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
Length = 521
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (284), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|418966957|ref|ZP_13518660.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
gi|383346061|gb|EID24135.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
Length = 523
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (284), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.4 bits (241), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|297744770|emb|CBI38032.3| unnamed protein product [Vitis vinifera]
Length = 797
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 138/435 (31%), Positives = 218/435 (50%), Gaps = 77/435 (17%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M WV+ + +++A+ + G+KTP+ IQ +P L R D++G AETGSGKT AF +P
Sbjct: 305 MRSWVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQR-DVIGIAETGSGKTAAFVLP 363
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
+LT +++L +EE+E + YA+++APTR
Sbjct: 364 MLT-YISRLPPMSEENEAEGP------------------------------YAVVMAPTR 392
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGRLWEFIQLGH 945
ELA Q+++ + Y +KV +VGG S E+Q RI C +++ATPGRL + ++ +
Sbjct: 393 ELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC-EVVIATPGRLIDCLERRY 451
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT------------MTETSQPRQTF 993
L + NY+V+DE DRMI+ G P++ +LD + + E R T+
Sbjct: 452 AVLNQ---CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKKIYRTTY 508
Query: 994 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 1053
+FSAT+ P+++RL +++P +V + T +
Sbjct: 509 MFSATMP-----------------------PAVERLARKY-LRNPVVVTIGTAGKATDLI 544
Query: 1054 TESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
T+ I+ K EK L + + +T +VF N+ S L + L LH +
Sbjct: 545 TQHVIMMKESEKMFKLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKS 604
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q QR +L+ FR + ++L+ATDVA RG+DIP + HVI+Y +P E+Y HR GRT RA
Sbjct: 605 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 664
Query: 1173 NEGLT---LVLIESD 1184
G+ L L +SD
Sbjct: 665 KTGVATTFLTLHDSD 679
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 144/500 (28%), Positives = 224/500 (44%), Gaps = 132/500 (26%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M WV+ + +++A+ + G+KTP+ IQ +P L R D++G AETGSGKT AF +P
Sbjct: 305 MRSWVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQR-DVIGIAETGSGKTAAFVLP 363
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
+LT +++L +EE+E + YA+++APTR
Sbjct: 364 MLT-YISRLPPMSEENEAEGP------------------------------YAVVMAPTR 392
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGRLWEFIQLGH 328
ELA Q+++ + Y +KV +VGG S E+Q RI C +++ATPGRL + ++ +
Sbjct: 393 ELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC-EVVIATPGRLIDCLERRY 451
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
L + NY+V+DE DRMI+ G P++ +LD M S PE ++
Sbjct: 452 AVLNQ---CNYVVLDEADRMIDMGFEPQVVGVLD------------AMPSSNLKPENED- 495
Query: 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 448
+ E R T++FSAT+ P+++RL +++
Sbjct: 496 ---EELDEKKIYRTTYMFSATMP-----------------------PAVERLARKY-LRN 528
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508
P +V + T +T+ I+ K EK F LQ L +E+ D
Sbjct: 529 PVVVTIGTAGKATDLITQHVIMMKESEK-----MFKLQK----LLDELGD---------- 569
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 568
KT +VF N+ S L + L
Sbjct: 570 ---------KT---------------------------AIVFINTKKSADNLAKGLDKAG 593
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
LH +Q QR +L+ FR + ++L+ATDVA RG+DIP + HVI+Y +P E+Y
Sbjct: 594 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMY 653
Query: 629 IHRSGRTARANNEGLTVVLI 648
HR GRT RA G+ +
Sbjct: 654 THRIGRTGRAGKTGVATTFL 673
Score = 54.3 bits (129), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGAL 1414
A+++APTRELA Q+++ + Y +KV +VGG S E+Q RI C +++ATPG L
Sbjct: 385 AVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC-EVVIATPGRL 443
>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
Length = 520
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 212/431 (49%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
IKR+ + +K P+ V + K T+ + + I K EK + +
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFATM 230
Query: 1070 YYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ ++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (286), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PESRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 96.7 bits (239), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK + + + ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFATMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++ +E+ I + D L +M + D E +I SR+ L S
Sbjct: 131 ---LDLIKRKALKLQDIETLI-LDEADEML-----NMGFLEDIEAIISRVPESRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|421241060|ref|ZP_15697605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
gi|395607438|gb|EJG67535.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
Length = 524
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K+P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKAPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K+P+ V + K T+ + + I K EK D+ + P +VF + V L
Sbjct: 196 MKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
903]
gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
903]
Length = 523
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 209/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLE 61
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
I + NT + AL++APTRELA
Sbjct: 62 KI------------------------------DVDNTV---------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLD 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I L++DE D M+ G +++ I+ RV T RQT +FSAT+ +
Sbjct: 143 H---IETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPEA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 122/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +FN+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P L
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLPTLE 61
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
I + NT + AL++APTRELA
Sbjct: 62 KI------------------------------DVDNTV---------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLD 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
I L++DE D M+ G +++ I+ RV T RQT++ S PE + R+
Sbjct: 143 H---IETLILDEADEMLNMGFLEDIEAIISRVPET-----RQTLLFSATMPE---AIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTDL 213
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKTGQSITFVSPNEM 348
Score = 65.9 bits (159), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++++E+ I + D L +M + D E +I +R+ L S
Sbjct: 131 ---LDLIKRKALKLDHIETLI-LDEADEML-----NMGFLEDIEAIISRVPETRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|387757824|ref|YP_006064803.1| DEAD/DEAH box helicase [Streptococcus pneumoniae OXC141]
gi|418133033|ref|ZP_12769904.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|418232585|ref|ZP_12859172.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|418237043|ref|ZP_12863610.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|419467196|ref|ZP_14007077.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|419480433|ref|ZP_14020238.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|419500133|ref|ZP_14039827.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|419512979|ref|ZP_14052611.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|419517184|ref|ZP_14056800.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|421283724|ref|ZP_15734510.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|421299049|ref|ZP_15749736.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|353804916|gb|EHD85194.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|353887312|gb|EHE67092.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|353892004|gb|EHE71754.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|379542943|gb|EHZ08095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|379570387|gb|EHZ35351.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|379599441|gb|EHZ64224.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|379634144|gb|EHZ98709.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|379639257|gb|EIA03801.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|395880410|gb|EJG91462.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|395900520|gb|EJH11458.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|429316448|emb|CCP36148.1| DEAD box helicase family protein [Streptococcus pneumoniae SPN034156]
gi|429321608|emb|CCP35074.1| DEAD box helicase family protein [Streptococcus pneumoniae SPN994039]
gi|429323428|emb|CCP31115.1| DEAD box helicase family protein [Streptococcus pneumoniae SPN994038]
Length = 524
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K+P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKAPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K+P+ V + K T+ + + I K EK D+ + P +VF + V L
Sbjct: 196 MKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|419495771|ref|ZP_14035488.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|421302943|ref|ZP_15753607.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
gi|379593857|gb|EHZ58668.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|395901565|gb|EJH12501.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
Length = 519
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K+P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKAPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K+P+ V + K T+ + + I K EK D+ + P +VF + V L
Sbjct: 196 MKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|383938412|ref|ZP_09991624.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
gi|418973302|ref|ZP_13521309.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC BAA-960]
gi|383349699|gb|EID27622.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC BAA-960]
gi|383714714|gb|EID70708.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
Length = 526
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (284), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|167375363|ref|XP_001733609.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
gi|165905196|gb|EDR30262.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar SAW760]
Length = 432
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 137/429 (31%), Positives = 216/429 (50%), Gaps = 68/429 (15%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
IPE +++ + G+K PTKIQ +P AL +KDI+G A+TGSGKT +F +P++ ++N
Sbjct: 17 IPE-VLKVVEYLGYKKPTKIQENSIPVAL-QKKDIIGIAQTGSGKTASFLLPMIQHLLN- 73
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
VK+ Y +I+ PTRELA QV
Sbjct: 74 -----------------------------------VKEKNRAFYCIIIEPTRELAAQVVE 98
Query: 895 HILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
+ + GK P ++C+ VGGM KQ L K PH++V TPGR+ I+ + K
Sbjct: 99 VLDEIGKALPGLMSCLLVGGMDVMKQSIQLAKRPHVIVGTPGRIVYHIKNTKGVEESIQK 158
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 1013
+ +LVIDE D+++E E+ +++++ SQ R T +FSAT++ ++
Sbjct: 159 VKFLVIDEADKLLEMDFANEIDYLIEKLP----SQ-RTTMLFSATMSTKVE--------- 204
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073
K ++ S P KI + +K TL + +D YL +
Sbjct: 205 -KLQRASLTHPV-------------KIKEEEQKYQTVDTLRQEYCFIPFKYRDGYLLSIL 250
Query: 1074 LQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
+ G++++ F S +L +L L + +PLH M+Q++RL L++F+ IL+
Sbjct: 251 KETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGKRGILV 310
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVA+RGLDIP ++ VI+Y P + YIHR GRTARA G + L+ I LY ++
Sbjct: 311 ATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIELYQRI 370
Query: 1193 FNSLEKKVD 1201
+EKK++
Sbjct: 371 ETMIEKKLN 379
Score = 104 bits (259), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 7/166 (4%)
Query: 519 TLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHAS 577
TL + +D YL + + G++++ F S +L +L L + +PLH
Sbjct: 229 TLRQEYCFIPFKYRDGYLLSILKETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGK 288
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
M+Q++RL L++F+ IL+ATDVA+RGLDIP ++ VI+Y P + YIHR GRTAR
Sbjct: 289 MSQQKRLIALEKFKSGKRGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTAR 348
Query: 638 ANNEGLTVVLIESDEIPLKTKF------NLQEEENNEEEERAEADK 677
A G + L+ I L + L E + NE+E A + K
Sbjct: 349 AGKSGYAITLVTQYSIELYQRIETMIEKKLNEYKVNEKEAIAYSQK 394
Score = 103 bits (258), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 44/239 (18%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
IPE +++ + G+K PTKIQ +P AL +KDI+G A+TGSGKT +F +P++ ++N
Sbjct: 17 IPE-VLKVVEYLGYKKPTKIQENSIPVAL-QKKDIIGIAQTGSGKTASFLLPMIQHLLN- 73
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
VK+ Y +I+ PTRELA QV
Sbjct: 74 -----------------------------------VKEKNRAFYCIIIEPTRELAAQVVE 98
Query: 278 HILDAGKYTPVKVAC-VVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
+ + GK P ++C +VGGM KQ L K PH++V TPGR+ I+ + K
Sbjct: 99 VLDEIGKALPGLMSCLLVGGMDVMKQSIQLAKRPHVIVGTPGRIVYHIKNTKGVEESIQK 158
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ +LVIDE D+++E E+ +++++ SQ R TM+ S L R ++T
Sbjct: 159 VKFLVIDEADKLLEMDFANEIDYLIEKL----PSQ-RTTMLFSATMSTKVEKLQRASLT 212
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATP 1411
++ +I+ PTRELA QV + + GK P ++C+ VGGM KQ L K PH++V TP
Sbjct: 80 AFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSIQLAKRPHVIVGTP 139
Query: 1412 GALSLKRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDMDIIIDDENLIQPKANSRENA 1468
G + + I K +E K+K + D LE MD + + LI+ + R
Sbjct: 140 GRI-VYHIKNTKGVEESIQKVKFLVIDEADKLLE-----MDFANEIDYLIEKLPSQRTTM 193
Query: 1469 LMSKALVSKRKELQ 1482
L S + +K ++LQ
Sbjct: 194 LFSATMSTKVEKLQ 207
Score = 41.6 bits (96), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1280
P +++HR GRTARA G + L+ I LY ++ +EKK++
Sbjct: 336 PKDYIHRVGRTARAGKSGYAITLVTQYSIELYQRIETMIEKKLN 379
>gi|418194167|ref|ZP_12830656.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
gi|353857745|gb|EHE37707.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
Length = 524
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K+P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
+ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ P + + LT L
Sbjct: 192 GVQFMKAPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K+P+ V + K T+ + + I K EK D+ + P +VF + V L
Sbjct: 196 MKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 518
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 210/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +F++ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFDLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PDSRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +F++ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNEFDLSAELLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PDSRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTDL 213
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTDLVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348
Score = 65.9 bits (159), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 14/123 (11%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL- 130
Query: 1416 LKRIDLAK----SIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
+DL K ++ +E+ I + D L +M + D E +I +SR+ L S
Sbjct: 131 ---LDLIKRKALKLQDIETLI-LDEADEML-----NMGFLEDIEAIISRVPDSRQTLLFS 181
Query: 1472 KAL 1474
+
Sbjct: 182 ATM 184
>gi|356520446|ref|XP_003528873.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
10-like [Glycine max]
Length = 438
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 143/460 (31%), Positives = 225/460 (48%), Gaps = 72/460 (15%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
E+++ A + G+K+P KI + +P AL KD+ G A+TG GKT AF +PIL +
Sbjct: 14 LGFSESLVEACEKLGWKSPLKIXTEAIPIALEG-KDVTGLAQTGYGKTGAFALPILHAL- 71
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P + + +L+PTRELAIQ+
Sbjct: 72 --LEAPRPKH----------------------------------FFDCVLSPTRELAIQI 95
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
G VK A +VGG+ +Q + K PHI+V TP R+ + L H L
Sbjct: 96 AEQFEALGSXIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPRRVLD--HLKHTKGFSLG 153
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
++ YLV+DE DR++ L IL + + R+TF+FSAT+T
Sbjct: 154 RLKYLVLDEADRLLNEDFEESLNEILQMI-----PRERKTFLFSATMT------------ 196
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
KKV K LQ + +++P ++ + K TL + + KD Y Y
Sbjct: 197 ----KKVQK-------LQRVC-LRNPVKIEASSKYSTVDTLKQQYLFLPAKHKDCYFVYI 244
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + G T +VF + + + L +L L +P++ M+Q +RL ++F+ +IL
Sbjct: 245 LTEMSGSTSMVFTCTCDATRLLALILRNLGLKAIPINGHMSQSKRLGASNKFKSGECNIL 304
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
L TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+ E+ YI+
Sbjct: 305 LCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRFGVAISLVNQYELGWYIQ 364
Query: 1192 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ + K LP++P E + L+++R+ AK + ++ K
Sbjct: 365 IEKLIGNK--LPEYPAQEEEVLLLEERVSEAKRLAVMKMK 402
Score = 153 bits (386), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 137/498 (27%), Positives = 205/498 (41%), Gaps = 152/498 (30%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
E+++ A + G+K+P KI + +P AL KD+ G A+TG GKT AF +PIL +
Sbjct: 14 LGFSESLVEACEKLGWKSPLKIXTEAIPIALEG-KDVTGLAQTGYGKTGAFALPILHAL- 71
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P + + +L+PTRELAIQ+
Sbjct: 72 --LEAPRPKH----------------------------------FFDCVLSPTRELAIQI 95
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
G VK A +VGG+ +Q + K PHI+V TP R+ + L H L
Sbjct: 96 AEQFEALGSXIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPRRVLD--HLKHTKGFSLG 153
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
++ YLV+DE DR++ L IL + PR+
Sbjct: 154 RLKYLVLDEADRLLNEDFEESLNEILQMI-------PRE--------------------- 185
Query: 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 455
R+TF+FSAT+T KKV K LQ + +++P ++ +
Sbjct: 186 -----RKTFLFSATMT----------------KKVQK-------LQRVC-LRNPVKIEAS 216
Query: 456 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515
K TL + + KD Y Y + + G T +
Sbjct: 217 SKYSTVDTLKQQYLFLPAKHKDCYFVYILTEMSGST---------------------SMV 255
Query: 516 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
T T +++L IL++ G LK P+ H
Sbjct: 256 FTCTCDATRLLA-----------LILRNLG---------------------LKAIPINGH 283
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M+Q +RL ++F+ +ILL TDVA+RGLDIP ++ VI+Y +P S+ YIHR GRT
Sbjct: 284 --MSQSKRLGASNKFKSGECNILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRT 341
Query: 636 ARANNEGLTVVLIESDEI 653
ARA G+ + L+ E+
Sbjct: 342 ARAGRFGVAISLVNQYEL 359
Score = 48.5 bits (114), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 1344 IFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
+ E+ ++ +D +L+PTRELAIQ+ G VK A +VGG+ +Q + K
Sbjct: 71 LLEAPRPKHFFDC-VLSPTRELAIQIAEQFEALGSXIGVKCAVLVGGIDMVQQSIKIAKQ 129
Query: 1404 PHILVATP 1411
PHI+V TP
Sbjct: 130 PHIIVGTP 137
Score = 40.4 bits (93), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G+ + L+ E+ YI++ + K LP++P E + L+++R+
Sbjct: 333 DYIHRVGRTARAGRFGVAISLVNQYELGWYIQIEKLIGNK--LPEYPAQEEEVLLLEERV 390
Query: 1299 DLAKSIEYLESK 1310
AK + ++ K
Sbjct: 391 SEAKRLAVMKMK 402
>gi|417850281|ref|ZP_12496192.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis SK1080]
gi|339452963|gb|EGP65581.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis SK1080]
Length = 524
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 211/431 (48%), Gaps = 74/431 (17%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ I L++DE D M+ G +++ I+ RV + RQT +FSAT+ +
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMPDA------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSY 1068
IKR+ + +K P+ V + K T+ + + I K EK D+
Sbjct: 188 ----------------IKRI-GVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTM 230
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
++ P +VF + V LT+ L + +H ++Q +RL+ L F++ N
Sbjct: 231 TRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNL 290
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 291 DVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG- 349
Query: 1189 YIKMFNSLEKK 1199
Y+++ +L KK
Sbjct: 350 YLQIIENLTKK 360
Score = 114 bits (284), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 51/262 (19%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ ++ + + GF + IQ +P AL KD++G A+TG+GKT AFG+P
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEG-KDVIGQAQTGTGKTAAFGLP--- 58
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
LE++ E A + AL++APTRELA
Sbjct: 59 -------------------------TLEKIRTEEAT-----------IQALVIAPTRELA 82
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
+Q Q + G+ VKV V GG S EKQ++ L HI+V TPGRL + I+ L
Sbjct: 83 VQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQ 142
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ I L++DE D M+ G +++ I+ RV + RQT++ S P + + R+
Sbjct: 143 D---IETLILDEADEMLNMGFLEDIEAIISRV-----PENRQTLLFSATMP---DAIKRI 191
Query: 393 TMTETSQPRQTFVFSATLTHSL 414
+ +P + + LT L
Sbjct: 192 GVQFMKEPEHVKIAAKELTTEL 213
Score = 97.1 bits (240), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P+ V + K T+ + + I K EK D+ ++ P +VF + V L
Sbjct: 196 MKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N +L+ATDVAARGLDI G+ HV +Y
Sbjct: 256 TRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 72 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRL 130
>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Enterococcus
faecium DO]
gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|383327538|ref|YP_005353422.1| DEAD/DEAH box helicase [Enterococcus faecium Aus0004]
gi|389867363|ref|YP_006374786.1| DEAD/DEAH box helicase [Enterococcus faecium DO]
gi|415892439|ref|ZP_11549927.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|416131873|ref|ZP_11597781.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|424795449|ref|ZP_18221304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium S447]
gi|424819380|ref|ZP_18244487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium R501]
gi|424856321|ref|ZP_18280560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium R499]
gi|424949231|ref|ZP_18364921.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium R496]
gi|424956289|ref|ZP_18371077.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium R446]
gi|424967919|ref|ZP_18381589.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium P1140]
gi|424976047|ref|ZP_18389165.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium P1137]
gi|424981969|ref|ZP_18394659.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium ERV99]
gi|424984734|ref|ZP_18397253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium ERV69]
gi|424987723|ref|ZP_18400084.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium ERV38]
gi|424990961|ref|ZP_18403147.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium ERV26]
gi|424995504|ref|ZP_18407380.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|424997413|ref|ZP_18409175.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|425000503|ref|ZP_18412062.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|425003235|ref|ZP_18414612.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|425006604|ref|ZP_18417774.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium ERV1]
gi|425011167|ref|ZP_18422079.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium E422]
gi|425013771|ref|ZP_18424487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium E417]
gi|425017560|ref|ZP_18428061.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium C621]
gi|425022464|ref|ZP_18432645.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium C497]
gi|425030171|ref|ZP_18435374.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium C1904]
gi|425033448|ref|ZP_18438416.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|425034930|ref|ZP_18439786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|425040930|ref|ZP_18445364.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|425044373|ref|ZP_18448536.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|425047569|ref|ZP_18451517.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|425053412|ref|ZP_18456957.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|430831942|ref|ZP_19449990.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430847435|ref|ZP_19465272.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430855628|ref|ZP_19473336.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|431544298|ref|ZP_19518594.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|431749300|ref|ZP_19538042.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|431755816|ref|ZP_19544461.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|431767952|ref|ZP_19556395.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|431769544|ref|ZP_19557952.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|431773402|ref|ZP_19561727.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|431776500|ref|ZP_19564761.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|431779582|ref|ZP_19567775.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|431782613|ref|ZP_19570746.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|431784440|ref|ZP_19572479.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Enterococcus
faecium DO]
gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|364093335|gb|EHM35615.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|364093511|gb|EHM35776.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|378937232|gb|AFC62304.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium Aus0004]
gi|388532612|gb|AFK57804.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium DO]
gi|402924387|gb|EJX44599.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium S447]
gi|402926241|gb|EJX46293.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium R501]
gi|402930201|gb|EJX49880.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium R499]
gi|402934931|gb|EJX54225.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium R496]
gi|402946393|gb|EJX64674.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium R446]
gi|402952005|gb|EJX69866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium P1137]
gi|402953338|gb|EJX71063.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium P1140]
gi|402962168|gb|EJX79137.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium ERV99]
gi|402967955|gb|EJX84466.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium ERV69]
gi|402973745|gb|EJX89845.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium ERV38]
gi|402977156|gb|EJX92995.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|402978215|gb|EJX93973.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium ERV26]
gi|402986313|gb|EJY01444.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|402988977|gb|EJY03941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|402992431|gb|EJY07139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|402996952|gb|EJY11308.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium ERV1]
gi|402997720|gb|EJY12029.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium E422]
gi|403000335|gb|EJY14462.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium E417]
gi|403002697|gb|EJY16644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium C497]
gi|403004081|gb|EJY17911.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium C621]
gi|403004113|gb|EJY17941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium C1904]
gi|403009946|gb|EJY23359.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|403018997|gb|EJY31633.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|403027273|gb|EJY39167.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|403029941|gb|EJY41662.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|403030418|gb|EJY42102.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|403033364|gb|EJY44870.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|430480583|gb|ELA57757.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430537055|gb|ELA77408.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430546683|gb|ELA86626.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|430592410|gb|ELB30425.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|430611728|gb|ELB48804.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|430616431|gb|ELB53345.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|430630040|gb|ELB66417.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|430636649|gb|ELB72713.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|430636858|gb|ELB72912.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|430640819|gb|ELB76647.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|430641683|gb|ELB77478.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|430647250|gb|ELB82698.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|430649535|gb|ELB84911.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
Length = 503
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 139/468 (29%), Positives = 227/468 (48%), Gaps = 79/468 (16%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE +++++ + GF+ T IQ+ +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQAETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015
LV+DE D M+ G +++ I+ +V RQT +FSAT+ ++KN + +K
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKN-IGVK----- 194
Query: 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFIL 1074
+K+P V + K + + + K EK D F +
Sbjct: 195 ------------------FMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDV 236
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q P T+VF + V L + L +H ++Q++R+ L F+ + IL+AT
Sbjct: 237 QTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVAT 296
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDI G+ HV +Y +P+ E Y+HR GRT RA G+++ + +E+ + N
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIEN 356
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLH 1242
+K++ P ++ + L ++E +E+K+ +N D +L
Sbjct: 357 LTKKRMTTLRPPTEKEAF-----KGQLGAAVEQIETKLAENGLDKYLQ 399
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 117/231 (50%), Gaps = 50/231 (21%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE +++++ + GF+ T IQ+ +P AL A KD++G A+TG+GKT AFG+P+L
Sbjct: 10 PE-LLKSVERAGFEEATPIQAETIPLAL-AGKDVIGQAQTGTGKTAAFGLPML------- 60
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E + R++L L++APTRELAIQ Q
Sbjct: 61 --------------------------------EKIDPDRHELQGLVIAPTRELAIQTQEE 88
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
+ G+ V+V V GG +Q+R L PHI+V TPGR+ + I + H +L +
Sbjct: 89 LYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRMLDHI---NRHTLKLGTVQ 145
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PELKNI 388
LV+DE D M+ G +++ I+ +V RQT++ S P +KNI
Sbjct: 146 TLVLDEADEMLNMGFLEDIEKIISQV-----PDQRQTLLFSATMPPAIKNI 191
Score = 92.0 bits (227), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K+P V + K + + + K EK D F +Q P T+VF + V L
Sbjct: 196 MKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRTKRRVDEL 255
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L +H ++Q++R+ L F+ + IL+ATDVAARGLDI G+ HV +Y
Sbjct: 256 ARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYD 315
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G++V + +E+
Sbjct: 316 IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R+ L++APTRELAIQ Q + G+ V+V V GG +Q+R L PHI+V T
Sbjct: 67 RHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKDRPHIVVGT 126
Query: 1411 PGAL 1414
PG +
Sbjct: 127 PGRM 130
Score = 41.2 bits (95), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P++++HR GRT RA G+++ + +E+ + N +K++ P ++
Sbjct: 320 PESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAF----- 374
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEKAAK 1325
+ L ++E +E+K+ +N D +L+ A K
Sbjct: 375 KGQLGAAVEQIETKLAENGLDKYLQTADK 403
>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
Length = 539
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 135/414 (32%), Positives = 202/414 (48%), Gaps = 74/414 (17%)
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
GF + IQ +P A+ A KD++G A+TG+GKT AFG P L I ENP
Sbjct: 41 GFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPTLEKI--NTENPV------- 90
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
+ AL++APTRELA+Q Q + G+ VK
Sbjct: 91 ------------------------------VQALVIAPTRELAVQSQEELFRFGRSKGVK 120
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966
V V GG S EKQ++ L HI+V TPGRL + I+ L + L++DE D M+
Sbjct: 121 VRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLNH---VETLILDEADEML 177
Query: 967 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026
G +++ I+ RV + RQT +FSAT+ + I
Sbjct: 178 NMGFLEDIEAIISRV-----PEERQTLLFSATMPDA-----------------------I 209
Query: 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCN 1085
KR+ + +K P V + K T+ + + I K +EK D+ ++ P ++VF
Sbjct: 210 KRI-GVKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 268
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
+ V LT+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G
Sbjct: 269 TKRRVDELTRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLDILVATDVAARGLDISG 328
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
+ HV +Y +P+ E Y+HR GRT RA G ++ + +E+ Y+++ SL KK
Sbjct: 329 VTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMG-YLQVIESLTKK 381
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 113/245 (46%), Gaps = 51/245 (20%)
Query: 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229
GF + IQ +P A+ A KD++G A+TG+GKT AFG P L I ENP
Sbjct: 41 GFVEASPIQEQTIPLAM-AGKDVIGQAQTGTGKTAAFGFPTLEKI--NTENPV------- 90
Query: 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 289
+ AL++APTRELA+Q Q + G+ VK
Sbjct: 91 ------------------------------VQALVIAPTRELAVQSQEELFRFGRSKGVK 120
Query: 290 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349
V V GG S EKQ++ L HI+V TPGRL + I+ L + L++DE D M+
Sbjct: 121 VRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLNH---VETLILDEADEML 177
Query: 350 ESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
G +++ I+ RV + RQT++ S P + + R+ + +P + +
Sbjct: 178 NMGFLEDIEAIISRV-----PEERQTLLFSATMP---DAIKRIGVKFMKEPTHVKIAAKE 229
Query: 410 LTHSL 414
LT L
Sbjct: 230 LTTEL 234
Score = 96.7 bits (239), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRL 560
+K P V + K T+ + + I K +EK D+ ++ P ++VF + V L
Sbjct: 217 MKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDEL 276
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L + +H ++Q +RL+ L F++ N IL+ATDVAARGLDI G+ HV +Y
Sbjct: 277 TRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLDILVATDVAARGLDISGVTHVYNYD 336
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P+ E Y+HR GRT RA G ++ + +E+
Sbjct: 337 IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 369
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA+Q Q + G+ VKV V GG S EKQ++ L HI+V TPG L
Sbjct: 93 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRL 151
>gi|254438460|ref|ZP_05051954.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
gi|198253906|gb|EDY78220.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
Length = 530
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 131/459 (28%), Positives = 219/459 (47%), Gaps = 94/459 (20%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M ++ + +++A+ + G+ TPT IQ+ +P AL R D++G A+TG+GKT F +P
Sbjct: 1 MIKFSDLKLDAKVLKAVEETGYTTPTPIQAGAIPPALEGR-DVLGIAQTGTGKTAGFTLP 59
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY---ALILA 883
++T +K+ R + +L+LA
Sbjct: 60 MIT---------------------------------------MLKRGRARARMPRSLVLA 80
Query: 884 PTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943
PTRELA QV + KYT + A ++GG+S ++Q ++++ +L+ATPGRL + +
Sbjct: 81 PTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKEQDNLIDRGVDVLIATPGRLLDHFER 140
Query: 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003
G L++ + +V+DE DRM++ G P+++ I T RQT FSAT+
Sbjct: 141 GKLILSD---VKIMVVDEADRMLDMGFIPDIERIFGLTPFT-----RQTLFFSATMA--- 189
Query: 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 1063
P I+R+ + + +P +++ ++T+T+ I+ K
Sbjct: 190 --------------------PEIERITNTF-LSNPAKIEVARAATTSETITQGVIMFKGS 228
Query: 1064 EKDS------YLYYFILQHPGRT----LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
+K S L I+ G ++FCN V + + +T P+H + Q
Sbjct: 229 KKTSEAIEKQKLLRDIIASEGANCRNGIIFCNRKIDVDAVAKSMTKAGLDASPIHGDLEQ 288
Query: 1114 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
R++ L +FRD L+A+DVAARGLDIP + HV +Y VP +E Y+HR GRT RA
Sbjct: 289 SHRMRTLAKFRDGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGK 348
Query: 1174 EGLTLVLIES------DEIPLYIKMFNSLEKKVDLPDFP 1206
G T+++ D+I ++M ++DLP P
Sbjct: 349 TGATIMICTPRDQKNLDDIERLVEM---AVPRMDLPGMP 384
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 149/300 (49%), Gaps = 60/300 (20%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M ++ + +++A+ + G+ TPT IQ+ +P AL R D++G A+TG+GKT F +P
Sbjct: 1 MIKFSDLKLDAKVLKAVEETGYTTPTPIQAGAIPPALEGR-DVLGIAQTGTGKTAGFTLP 59
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY---ALILA 266
++T +K+ R + +L+LA
Sbjct: 60 MIT---------------------------------------MLKRGRARARMPRSLVLA 80
Query: 267 PTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326
PTRELA QV + KYT + A ++GG+S ++Q ++++ +L+ATPGRL + +
Sbjct: 81 PTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKEQDNLIDRGVDVLIATPGRLLDHFER 140
Query: 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF-PEL 385
G L++ + +V+DE DRM++ G P+++ I T RQT+ S PE
Sbjct: 141 GKLILSD---VKIMVVDEADRMLDMGFIPDIERIFGLTPFT-----RQTLFFSATMAPE- 191
Query: 386 KNILDRVTMTETSQPRQTFVF-SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL 444
++R+T T S P + V +AT + ++ + + KG SKK S+ K L+D++
Sbjct: 192 ---IERITNTFLSNPAKIEVARAATTSETITQGVIMFKG---SKKTSEAIEKQKLLRDII 245
Score = 101 bits (252), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDS------YLYYFILQ 542
T+ EI+ + N + +P +++ ++T+T+ I+ K +K S L I+
Sbjct: 187 TMAPEIERITNTFLSNPAKIEVARAATTSETITQGVIMFKGSKKTSEAIEKQKLLRDIIA 246
Query: 543 HPGRT----LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598
G ++FCN V + + +T P+H + Q R++ L +FRD L
Sbjct: 247 SEGANCRNGIIFCNRKIDVDAVAKSMTKAGLDASPIHGDLEQSHRMRTLAKFRDGTLRFL 306
Query: 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
+A+DVAARGLDIP + HV +Y VP +E Y+HR GRT RA G T+++
Sbjct: 307 VASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKTGATIMI 355
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+L+LAPTRELA QV + KYT + A ++GG+S ++Q ++++ +L+ATPG L
Sbjct: 76 SLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKEQDNLIDRGVDVLIATPGRL 134
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.131 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,321,927,416
Number of Sequences: 23463169
Number of extensions: 964023669
Number of successful extensions: 6005602
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 31801
Number of HSP's successfully gapped in prelim test: 13924
Number of HSP's that attempted gapping in prelim test: 5202071
Number of HSP's gapped (non-prelim): 591910
length of query: 1493
length of database: 8,064,228,071
effective HSP length: 156
effective length of query: 1337
effective length of database: 8,698,941,003
effective search space: 11630484121011
effective search space used: 11630484121011
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 84 (37.0 bits)