BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16310
(1493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 205/449 (45%), Gaps = 71/449 (15%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V+M E + NI T + PT +Q +P + ++D++ A+TGSGKT AF
Sbjct: 20 VEMGEIIMGNIELT--------RYTRPTPVQKHAIP-IIKEKRDLMACAQTGSGKTAAFL 70
Query: 825 IPILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLY--ALIL 882
+PIL+ I + + P E + R K Y +L+L
Sbjct: 71 LPILSQIYS--DGPGEALRA---------------------MKENGRYGRRKQYPISLVL 107
Query: 883 APTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942
APTRELA+Q+ + V+ V GG +Q+R L + H+LVATPGRL + ++
Sbjct: 108 APTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME 167
Query: 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHX 1002
G L YLV+DE DRM++ G P+++ I+++ TM R T +FSAT
Sbjct: 168 RGKIGLD---FCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RHTMMFSATFP-- 221
Query: 1003 XXXXXXXXXXXXXXXXXXXXDPSIKRLQDLL-NIKSPKIVDLTEKIGIT-KTLTESKILC 1060
K +Q L + I ++G T + +T+ +
Sbjct: 222 ------------------------KEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWV 257
Query: 1061 KHDEKDSYLYYFILQHPGR---TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 1117
+ +K S+L +L G+ TLVF + L L + +H +QR R
Sbjct: 258 EESDKRSFLLD-LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 316
Query: 1118 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 1177
+ L +FR + IL+AT VAARGLDI ++HVI++ +P E Y+HR GRT R N GL
Sbjct: 317 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 376
Query: 1178 LVLIESDEIPLYIKMFNSL-EKKVDLPDF 1205
I + + + L E K ++P +
Sbjct: 377 TSFFNERNINITKDLLDLLVEAKQEVPSW 405
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 121/251 (48%), Gaps = 38/251 (15%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V+M E + NI T + PT +Q +P + ++D++ A+TGSGKT AF
Sbjct: 20 VEMGEIIMGNIELT--------RYTRPTPVQKHAIP-IIKEKRDLMACAQTGSGKTAAFL 70
Query: 208 IPILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLY--ALIL 265
+PIL+ I + + P E + R K Y +L+L
Sbjct: 71 LPILSQIYS--DGPGEALRA---------------------MKENGRYGRRKQYPISLVL 107
Query: 266 APTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 325
APTRELA+Q+ + V+ V GG +Q+R L + H+LVATPGRL + ++
Sbjct: 108 APTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME 167
Query: 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385
G L YLV+DE DRM++ G P+++ I+++ TM R TM+ S FP+
Sbjct: 168 RGKIGLD---FCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RHTMMFSATFPKE 223
Query: 386 KNILDRVTMTE 396
+L R + E
Sbjct: 224 IQMLARDFLDE 234
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Query: 513 KIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGR---TLVFCNSISSVKRLTQLLTMLK 568
++G T + +T+ + + +K S+L +L G+ TLVF + L L
Sbjct: 242 RVGSTSENITQKVVWVEESDKRSFLLD-LLNATGKDSLTLVFVETKKGADSLEDFLYHEG 300
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
+ +H +QR R + L +FR + IL+AT VAARGLDI ++HVI++ +P E Y
Sbjct: 301 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 360
Query: 629 IHRSGRTARANNEGLT 644
+HR GRT R N GL
Sbjct: 361 VHRIGRTGRVGNLGLA 376
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1339 PNQLLIFESRNLRYSWD-----ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST 1393
P + L N RY +L+LAPTRELA+Q+ + V+ V GG
Sbjct: 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADI 141
Query: 1394 EKQLRILNKCPHILVATPGAL 1414
+Q+R L + H+LVATPG L
Sbjct: 142 GQQIRDLERGCHLLVATPGRL 162
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 189/422 (44%), Gaps = 79/422 (18%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V+ + + N+ + I+ A+ KGF+ PT IQ V+P L +IV A TGSGKT +F
Sbjct: 3 VEYXNFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFA 62
Query: 825 IPILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAP 884
IP++ +VN EN N + A+IL P
Sbjct: 63 IPLIE-LVN--EN-------------------------------------NGIEAIILTP 82
Query: 885 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
TRELAIQV + I +K+A + GG + Q++ L K +I+V TPGR+ + I G
Sbjct: 83 TRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRG 141
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXX 1004
+L + Y ++DE D + G +++ IL+ ++ ++ +FSAT
Sbjct: 142 TLNLKN---VKYFILDEADEXLNXGFIKDVEKILN-----ACNKDKRILLFSATXP---- 189
Query: 1005 XXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHD 1063
+++LN+ D + K I + +S + +
Sbjct: 190 -------------------------REILNLAKKYXGDYSFIKAKINANIEQSYVEVNEN 224
Query: 1064 EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
E+ L + LVFC + K L L + +H ++Q QR K + F
Sbjct: 225 ERFEALCRLLKNKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLF 284
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+ + IL+ATDV +RG+D+ + VI+YH+P+ E Y HR GRT RA +G + +I
Sbjct: 285 KQKKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINR 344
Query: 1184 DE 1185
E
Sbjct: 345 RE 346
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 50/235 (21%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V+ + + N+ + I+ A+ KGF+ PT IQ V+P L +IV A TGSGKT +F
Sbjct: 3 VEYXNFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFA 62
Query: 208 IPILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAP 267
IP++ +VN EN N + A+IL P
Sbjct: 63 IPLIE-LVN--EN-------------------------------------NGIEAIILTP 82
Query: 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
TRELAIQV + I +K+A + GG + Q++ L K +I+V TPGR+ + I G
Sbjct: 83 TRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRG 141
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILD------RVTMTETSQPRQTM 376
+L + Y ++DE D + G +++ IL+ R+ + + PR+ +
Sbjct: 142 TLNLKN---VKYFILDEADEXLNXGFIKDVEKILNACNKDKRILLFSATXPREIL 193
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
K I + +S + +E+ L + LVFC + K L L +
Sbjct: 207 KAKINANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASXLRDIGFKAG 266
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
+H ++Q QR K + F+ + IL+ATDV +RG+D+ + VI+YH+P+ E Y HR
Sbjct: 267 AIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRI 326
Query: 633 GRTARANNEGLTVVLIESDE 652
GRT RA +G + +I E
Sbjct: 327 GRTGRAGKKGKAISIINRRE 346
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1355 DALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+A+IL PTRELAIQV + I +K+A + GG + Q++ L K +I+V TPG +
Sbjct: 76 EAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRI 134
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped
Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A Trapped
Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 183/414 (44%), Gaps = 70/414 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E ++R +Y GF+ P+ IQ + + R D++ +++G+GKT F I +L +
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLD 101
Query: 833 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ V++T+ ALILAPTRELA+Q+
Sbjct: 102 IQ-----------------------------------VRETQ----ALILAPTRELAVQI 122
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
Q +L G Y V+ +GG + + +R L+ H++ TPGR+++ I+
Sbjct: 123 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR--- 179
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXX 1012
I LV+DE D M+ G ++ ++ + Q + SATL H
Sbjct: 180 AIKMLVLDEADEMLNKGFKEQIYDVYRYL-----PPATQVVLISATLPHEILEMTNKFMT 234
Query: 1013 XXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
+ +++ ++ + + + + LC D Y
Sbjct: 235 DPIRILVKRDELTLEGIKQFF-------------VAVEREEWKFDTLC-----DLYDTLT 276
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I Q ++FCN+ V LT+ + + +H M Q++R + FR + +L+
Sbjct: 277 ITQ----AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+TDV ARGLD+P + +I+Y +P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 43/205 (20%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E ++R +Y GF+ P+ IQ + + R D++ +++G+GKT F I +L +
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLD 101
Query: 216 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ V++T+ ALILAPTRELA+Q+
Sbjct: 102 IQ-----------------------------------VRETQ----ALILAPTRELAVQI 122
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
Q +L G Y V+ +GG + + +R L+ H++ TPGR+++ I+
Sbjct: 123 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR--- 179
Query: 336 KINYLVIDETDRMIESGHFPELKNI 360
I LV+DE D M+ G ++ ++
Sbjct: 180 AIKMLVLDEADEMLNKGFKEQIYDV 204
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 65/108 (60%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ ++FCN+ V LT+ + + +H M Q++R + FR + +L++TDV A
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
RGLD+P + +I+Y +P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALILAPTRELA+Q+Q +L G Y V+ +GG + + +R L+ H++ TPG
Sbjct: 109 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPG 165
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase
From Sulfolobus Tokodaii
Length = 337
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 182/406 (44%), Gaps = 89/406 (21%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E I +A+ + GFK T++QS +P +L K++V A+TGSGKT A+ IPIL
Sbjct: 3 EKIEQAIREMGFKNFTEVQSKTIP-LMLQGKNVVVRAKTGSGKTAAYAIPIL-------- 53
Query: 837 NPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
E K+ L++ PTREL QV +HI
Sbjct: 54 -------------------------------ELGMKS------LVVTPTRELTRQVASHI 76
Query: 897 LDAGKYTPVKVACVVGGMSTEKQL-RILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
D G+Y KVA V GGM + Q+ R+ N I+VATPGRL + G + +L
Sbjct: 77 RDIGRYMDTKVAEVYGGMPYKAQINRVRN--ADIVVATPGRLLDLWSKG---VIDLSSFE 131
Query: 956 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXX 1015
++IDE D M E G ++K IL +TS + T +FSAT+
Sbjct: 132 IVIIDEADLMFEMGFIDDIKIIL-----AQTSNRKITGLFSATIPEEIR----------- 175
Query: 1016 XXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 1075
K ++D + ++ IG+ E K + D+ S +
Sbjct: 176 -----------KVVKDFIT----NYEEIEACIGLAN--VEHKFVHVKDDWRSKVQALREN 218
Query: 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
+VF + + V +L +L + + L + Q R +N+D FR+ +L+ TD
Sbjct: 219 KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD 274
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
VA+RGLDIP +E VI++ P+ YIHR GRT R +G + I
Sbjct: 275 VASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 106/226 (46%), Gaps = 57/226 (25%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E I +A+ + GFK T++QS +P +L K++V A+TGSGKT A+ IPIL
Sbjct: 3 EKIEQAIREMGFKNFTEVQSKTIP-LMLQGKNVVVRAKTGSGKTAAYAIPIL-------- 53
Query: 220 NPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
E K+ L++ PTREL QV +HI
Sbjct: 54 -------------------------------ELGMKS------LVVTPTRELTRQVASHI 76
Query: 280 LDAGKYTPVKVACVVGGMSTEKQL-RILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
D G+Y KVA V GGM + Q+ R+ N I+VATPGRL + G + +L
Sbjct: 77 RDIGRYMDTKVAEVYGGMPYKAQINRVRN--ADIVVATPGRLLDLWSKG---VIDLSSFE 131
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
++IDE D M E G ++K IL +TS + T + S PE
Sbjct: 132 IVIIDEADLMFEMGFIDDIKIIL-----AQTSNRKITGLFSATIPE 172
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
+VF + + V +L +L + + L + Q R +N+D FR+ +L+ TDVA+R
Sbjct: 223 VIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASR 278
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
GLDIP +E VI++ P+ YIHR GRT R +G + I
Sbjct: 279 GLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 1350 LRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL-RILNKCPHILV 1408
L +L++ PTREL QV +HI D G+Y KVA V GGM + Q+ R+ N I+V
Sbjct: 53 LELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN--ADIVV 110
Query: 1409 ATPGAL 1414
ATPG L
Sbjct: 111 ATPGRL 116
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A
Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2 A
Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2 A
Resolution
Length = 410
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/451 (24%), Positives = 196/451 (43%), Gaps = 81/451 (17%)
Query: 744 TYTSANKELL--------EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQ 795
T SA K LL E +TS D+ + + E ++R +Y GF+ P+ IQ
Sbjct: 8 TSGSARKRLLKEEDMTKVEFETSEEVDV---TPTFDTMGLREDLLRGIYAYGFEKPSAIQ 64
Query: 796 SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXXXXXXXX 855
+ + R D++ +++G+GKT F I +L + +
Sbjct: 65 QRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLDIQ--------------------- 102
Query: 856 XXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS 915
V++T+ ALILAPTRELA+Q+Q +L G Y V+ +GG +
Sbjct: 103 --------------VRETQ----ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTN 144
Query: 916 TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELK 975
+ +R L+ H++ TPGR+++ I+ I LV+DE D M+ G ++
Sbjct: 145 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR---AIKMLVLDEADEMLNKGFKEQIY 201
Query: 976 NILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNI 1035
++ + Q + SATL H + +++ ++
Sbjct: 202 DVYRYL-----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFF-- 254
Query: 1036 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 1095
+ + + + LC D Y I Q ++FCN+ V LT+
Sbjct: 255 -----------VAVEREEWKFDTLC-----DLYDTLTITQ----AVIFCNTKRKVDWLTE 294
Query: 1096 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 1155
+ + +H M Q++R + FR + +L++TDV ARGLD+P + +I+Y +P
Sbjct: 295 KMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP 354
Query: 1156 RTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
E+YIHR GR+ R +G+ + +++D+I
Sbjct: 355 NNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 54/242 (22%)
Query: 127 TYTSANKELL--------EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQ 178
T SA K LL E +TS D+ + + E ++R +Y GF+ P+ IQ
Sbjct: 8 TSGSARKRLLKEEDMTKVEFETSEEVDV---TPTFDTMGLREDLLRGIYAYGFEKPSAIQ 64
Query: 179 SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXXXXXXXX 238
+ + R D++ +++G+GKT F I +L + +
Sbjct: 65 QRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLDIQ--------------------- 102
Query: 239 XXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS 298
V++T+ ALILAPTRELA+Q+Q +L G Y V+ +GG +
Sbjct: 103 --------------VRETQ----ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTN 144
Query: 299 TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELK 358
+ +R L+ H++ TPGR+++ I+ I LV+DE D M+ G ++
Sbjct: 145 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR---AIKMLVLDEADEMLNKGFKEQIY 201
Query: 359 NI 360
++
Sbjct: 202 DV 203
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 65/108 (60%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ ++FCN+ V LT+ + + +H M Q++R + FR + +L++TDV A
Sbjct: 278 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 337
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
RGLD+P + +I+Y +P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALILAPTRELA+Q+Q +L G Y V+ +GG + + +R L+ H++ TPG
Sbjct: 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPG 164
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 183/414 (44%), Gaps = 70/414 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E ++R +Y GF+ P+ IQ + + R D++ +++G+GKT F I +L +
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLD 101
Query: 833 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ V++T+ ALILAPTRELA+Q+
Sbjct: 102 IQ-----------------------------------VRETQ----ALILAPTRELAVQI 122
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
Q +L G Y V+ +GG + + +R L+ H++ TPGR+++ I+
Sbjct: 123 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR--- 179
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXX 1012
I LV+DE D M+ G ++ ++ + Q + SATL H
Sbjct: 180 AIKMLVLDEADEMLNKGFKEQIYDVYRYL-----PPATQVVLISATLPHEILEMTNKFMT 234
Query: 1013 XXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
+ +++ ++ + + + + LC D Y
Sbjct: 235 DPIRILVKRDELTLEGIKQFF-------------VAVEREEWKFDTLC-----DLYDTLT 276
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I Q ++FCN+ V LT+ + + +H M Q++R + FR + +L+
Sbjct: 277 ITQ----AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+TDV ARGLD+P + +I+Y +P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 43/205 (20%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E ++R +Y GF+ P+ IQ + + R D++ +++G+GKT F I +L +
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLD 101
Query: 216 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ V++T+ ALILAPTRELA+Q+
Sbjct: 102 IQ-----------------------------------VRETQ----ALILAPTRELAVQI 122
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
Q +L G Y V+ +GG + + +R L+ H++ TPGR+++ I+
Sbjct: 123 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR--- 179
Query: 336 KINYLVIDETDRMIESGHFPELKNI 360
I LV+DE D M+ G ++ ++
Sbjct: 180 AIKMLVLDEADEMLNKGFKEQIYDV 204
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 65/108 (60%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ ++FCN+ V LT+ + + +H M Q++R + FR + +L++TDV A
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
RGLD+P + +I+Y +P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALILAPTRELA+Q+Q +L G Y V+ +GG + + +R L+ H++ TPG
Sbjct: 109 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPG 165
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 144 bits (363), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 183/414 (44%), Gaps = 70/414 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E ++R +Y GF+ P+ IQ + + R D++ +++G+GKT F I +L +
Sbjct: 21 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLD 79
Query: 833 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ V++T+ ALILAPTRELA+Q+
Sbjct: 80 IQ-----------------------------------VRETQ----ALILAPTRELAVQI 100
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
Q +L G Y V+ +GG + + +R L+ H++ TPGR+++ I+
Sbjct: 101 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR--- 157
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXX 1012
I LV+DE D M+ G ++ ++ + Q + SATL H
Sbjct: 158 AIKMLVLDEADEMLNKGFKEQIYDVYRYL-----PPATQVVLISATLPHEILEMTNKFMT 212
Query: 1013 XXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
+ +++ ++ + + + + LC D Y
Sbjct: 213 DPIRILVKRDELTLEGIKQFF-------------VAVEREEWKFDTLC-----DLYDTLT 254
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I Q ++FCN+ V LT+ + + +H M Q++R + FR + +L+
Sbjct: 255 ITQ----AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 310
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+TDV ARGLD+P + +I+Y +P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 311 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 364
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 43/205 (20%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E ++R +Y GF+ P+ IQ + + R D++ +++G+GKT F I +L +
Sbjct: 21 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLD 79
Query: 216 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ V++T+ ALILAPTRELA+Q+
Sbjct: 80 IQ-----------------------------------VRETQ----ALILAPTRELAVQI 100
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
Q +L G Y V+ +GG + + +R L+ H++ TPGR+++ I+
Sbjct: 101 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR--- 157
Query: 336 KINYLVIDETDRMIESGHFPELKNI 360
I LV+DE D M+ G ++ ++
Sbjct: 158 AIKMLVLDEADEMLNKGFKEQIYDV 182
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 65/108 (60%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ ++FCN+ V LT+ + + +H M Q++R + FR + +L++TDV A
Sbjct: 257 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 316
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
RGLD+P + +I+Y +P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 317 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 364
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALILAPTRELA+Q+Q +L G Y V+ +GG + + +R L+ H++ TPG
Sbjct: 87 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPG 143
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 189/419 (45%), Gaps = 75/419 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++ +++ GF+ P+ IQ +P A+ R DI+ A+ G+GKT AF IP
Sbjct: 26 FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIP------ 78
Query: 833 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 892
T E VK NK+ ALI+ PTRELA+Q
Sbjct: 79 ---------------------------------TLEKVKPKLNKIQALIMVPTRELALQT 105
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ GK+ + GG + + LN+ HILV TPGR+ + L + +L
Sbjct: 106 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRV---LDLASRKVADLS 162
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXX 1012
+ ++DE D+M+ + K I++++ ++ Q+ +FSAT
Sbjct: 163 DCSLFIMDEADKMLSR----DFKTIIEQI-LSFLPPTHQSLLFSATF------------- 204
Query: 1013 XXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL-YY 1071
P + + ++ P ++L E++ + K +T+ + +K L
Sbjct: 205 -----------PLTVKEFMVKHLHKPYEINLMEELTL-KGITQYYAFVEERQKLHCLNTL 252
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
F + ++FCNS + V+ L + +T L S HA M Q++R K FR L
Sbjct: 253 FSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTL 312
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIE-SDEIPLY 1189
+ +D+ RG+DI + VI++ P+T+E Y+HR GR+ R + GL + LI +D LY
Sbjct: 313 VCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLY 371
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 48/228 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++ +++ GF+ P+ IQ +P A+ R DI+ A+ G+GKT AF IP
Sbjct: 26 FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIP------ 78
Query: 216 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 275
T E VK NK+ ALI+ PTRELA+Q
Sbjct: 79 ---------------------------------TLEKVKPKLNKIQALIMVPTRELALQT 105
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ GK+ + GG + + LN+ HILV TPGR+ + L + +L
Sbjct: 106 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRV---LDLASRKVADLS 162
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
+ ++DE D+M+ + K I++++ ++ Q+++ S FP
Sbjct: 163 DCSLFIMDEADKMLSR----DFKTIIEQI-LSFLPPTHQSLLFSATFP 205
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ ++FCNS + V+ L + +T L S HA M Q++R K FR L+ +D+
Sbjct: 260 QAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 319
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661
RG+DI + VI++ P+T+E Y+HR GR+ R + GL + LI ++ +FNL
Sbjct: 320 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWND-----RFNL 370
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALI+ PTRELA+Q + GK+ + GG + + LN+ HILV TPG
Sbjct: 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPG--- 148
Query: 1416 LKRIDLA 1422
+ +DLA
Sbjct: 149 -RVLDLA 154
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A
Resolution
Length = 374
Score = 143 bits (361), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 183/414 (44%), Gaps = 70/414 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E ++R +Y GF+ P+ IQ + + R D++ +++G+GKT F + +L +
Sbjct: 6 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSVSVLQCLD 64
Query: 833 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ V++T+ ALILAPTRELA+QV
Sbjct: 65 IQ-----------------------------------VRETQ----ALILAPTRELAVQV 85
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
Q +L G Y V+ +GG + + +R L+ H++ TPGR+++ I+
Sbjct: 86 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR--- 142
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXX 1012
I LV+DE D M+ G ++ ++ + Q + SATL H
Sbjct: 143 AIKMLVLDEADEMLNKGFKEQIYDVYRYL-----PPATQVVLISATLPHEILEMTNKFMT 197
Query: 1013 XXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
+ +++ ++ + + + + LC D Y
Sbjct: 198 DPIRILVKRDELTLEGIKQFF-------------VAVEREEWKFDTLC-----DLYDTLT 239
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I Q ++FCN+ V LT+ + + +H M Q++R + FR + +L+
Sbjct: 240 ITQ----AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 295
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+TDV ARGLD+P + +I+Y +P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 296 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDI 349
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 43/205 (20%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E ++R +Y GF+ P+ IQ + + R D++ +++G+GKT F + +L +
Sbjct: 6 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSVSVLQCLD 64
Query: 216 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ V++T+ ALILAPTRELA+QV
Sbjct: 65 IQ-----------------------------------VRETQ----ALILAPTRELAVQV 85
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
Q +L G Y V+ +GG + + +R L+ H++ TPGR+++ I+
Sbjct: 86 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR--- 142
Query: 336 KINYLVIDETDRMIESGHFPELKNI 360
I LV+DE D M+ G ++ ++
Sbjct: 143 AIKMLVLDEADEMLNKGFKEQIYDV 167
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ ++FCN+ V LT+ + + +H M Q++R + FR + +L++TDV A
Sbjct: 242 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 301
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
RGLD+P + +I+Y +P E+YIHR GR+ R +G+ V +++D+I
Sbjct: 302 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDI 349
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALILAPTRELA+QVQ +L G Y V+ +GG + + +R L+ H++ TPG
Sbjct: 72 ALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPG 128
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A
Resolution
Length = 374
Score = 143 bits (361), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 183/414 (44%), Gaps = 70/414 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E ++R +Y GF+ P+ IQ + + R D++ +++G+GKT F + +L +
Sbjct: 6 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSVSVLQCLD 64
Query: 833 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ V++T+ ALILAPTRELA+QV
Sbjct: 65 IQ-----------------------------------VRETQ----ALILAPTRELAVQV 85
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
Q +L G Y V+ +GG + + +R L+ H++ TPGR+++ I+
Sbjct: 86 QKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR--- 142
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXX 1012
I LV+DE D M+ G ++ ++ + Q + SATL H
Sbjct: 143 AIKMLVLDEADEMLNKGFKEQIYDVYRYL-----PPATQVVLISATLPHEVLEMTNKFMT 197
Query: 1013 XXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
+ +++ ++ + + + + LC D Y
Sbjct: 198 DPIRILVKRDELTLEGIKQFF-------------VAVEREEWKFDTLC-----DLYDTLT 239
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I Q ++FCN+ V LT+ + + +H M Q++R + FR + +L+
Sbjct: 240 ITQ----AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 295
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+TDV ARGLD+P + +I+Y +P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 296 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDI 349
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 43/205 (20%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E ++R +Y GF+ P+ IQ + + R D++ +++G+GKT F + +L +
Sbjct: 6 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSVSVLQCLD 64
Query: 216 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ V++T+ ALILAPTRELA+QV
Sbjct: 65 IQ-----------------------------------VRETQ----ALILAPTRELAVQV 85
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
Q +L G Y V+ +GG + + +R L+ H++ TPGR+++ I+
Sbjct: 86 QKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR--- 142
Query: 336 KINYLVIDETDRMIESGHFPELKNI 360
I LV+DE D M+ G ++ ++
Sbjct: 143 AIKMLVLDEADEMLNKGFKEQIYDV 167
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ ++FCN+ V LT+ + + +H M Q++R + FR + +L++TDV A
Sbjct: 242 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 301
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
RGLD+P + +I+Y +P E+YIHR GR+ R +G+ V +++D+I
Sbjct: 302 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDI 349
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALILAPTRELA+QVQ +L G Y V+ +GG + + +R L+ H++ TPG
Sbjct: 72 ALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVAGTPG 128
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 181/406 (44%), Gaps = 65/406 (16%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ ++ + II + + G+K PT IQ +P + + +D++ A+TGSGKT AF +PIL+
Sbjct: 58 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIP-VISSGRDLMACAQTGSGKTAAFLLPILS 116
Query: 830 GIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELA 889
+ LE+P + +I++PTRELA
Sbjct: 117 KL---LEDPHELEL-------------------------------GRPQVVIVSPTRELA 142
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
IQ+ N + +K+ V GG S Q + + H+++ATPGRL +F+
Sbjct: 143 IQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXX 1009
+ ++V+DE DRM++ G +++ I+ VTM QT +FSAT
Sbjct: 203 D---TRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPE---HQTLMFSATFPE-------- 248
Query: 1010 XXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
I+R+ +K+ V + G + ++ K S L
Sbjct: 249 ---------------EIQRMAGEF-LKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKL 292
Query: 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129
+ + T+VF + L L+ + +H Q QR + L F++ +
Sbjct: 293 IEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK 352
Query: 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
+L+AT VA+RGLDI I+HVI+Y +P + Y+HR GRT R N G
Sbjct: 353 VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNG 398
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 41/232 (17%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ ++ + II + + G+K PT IQ +P + + +D++ A+TGSGKT AF +PIL+
Sbjct: 58 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIP-VISSGRDLMACAQTGSGKTAAFLLPILS 116
Query: 213 GIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELA 272
+ LE+P + +I++PTRELA
Sbjct: 117 KL---LEDPHELEL-------------------------------GRPQVVIVSPTRELA 142
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
IQ+ N + +K+ V GG S Q + + H+++ATPGRL +F+
Sbjct: 143 IQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ ++V+DE DRM++ G +++ I+ VTM QT++ S FPE
Sbjct: 203 D---TRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPE---HQTLMFSATFPE 248
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 53/96 (55%)
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
T+VF + L L+ + +H Q QR + L F++ + +L+AT VA+R
Sbjct: 303 TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASR 362
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
GLDI I+HVI+Y +P + Y+HR GRT R N G
Sbjct: 363 GLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNG 398
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+I++PTRELAIQ+ N + +K+ V GG S Q + + H+++ATPG L
Sbjct: 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRL 190
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 113/424 (26%), Positives = 188/424 (44%), Gaps = 76/424 (17%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
M+ + F + ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F +
Sbjct: 5 HMSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVL 63
Query: 826 PILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPT 885
L +LE T ++ L++ T
Sbjct: 64 ATL----QQLEPVT-----------------------------------GQVSVLVMCHT 84
Query: 886 RELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNK-CPHILVATPGRLWEFIQL 943
RELA Q+ KY P VKVA GG+S +K +L K CPHI+V TPGR+ + L
Sbjct: 85 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI---LAL 141
Query: 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXX 1003
L I + ++DE D+M+E +++ + MT +Q +FSATL+
Sbjct: 142 ARNKSLNLKHIKHFILDEADKMLE--QLDMRRDVQEIFRMT--PHEKQVMMFSATLSKEI 197
Query: 1004 XXXXXXXXXXXXXXXXXXXDPSIKR-LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH 1062
P ++ +QD + I VD K+ + L + + K
Sbjct: 198 R-------------------PVCRKFMQDPMEI----FVDDETKLTL-HGLQQYYVKLKD 233
Query: 1063 DEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
+EK+ L+ + + + ++F S+ L QLL + +H M Q +RL
Sbjct: 234 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 293
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
+F+D IL+AT++ RG+DI + +Y +P S+ Y+HR R R +GL + +
Sbjct: 294 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 353
Query: 1182 ESDE 1185
SDE
Sbjct: 354 -SDE 356
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 45/204 (22%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
M+ + F + ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F +
Sbjct: 5 HMSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVL 63
Query: 209 PILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPT 268
L +LE T ++ L++ T
Sbjct: 64 ATL----QQLEPVT-----------------------------------GQVSVLVMCHT 84
Query: 269 RELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNK-CPHILVATPGRLWEFIQL 326
RELA Q+ KY P VKVA GG+S +K +L K CPHI+V TPGR+ + L
Sbjct: 85 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI---LAL 141
Query: 327 GHFHLTELYKINYLVIDETDRMIE 350
L I + ++DE D+M+E
Sbjct: 142 ARNKSLNLKHIKHFILDEADKMLE 165
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 15/217 (6%)
Query: 444 LNIKSPK--IVD----LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE-I 496
LN+K K I+D + E++ + + + E + H EK ++ L R +C + +
Sbjct: 147 LNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPH-EKQVMMFSATLSKEIRPVCRKFM 205
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSIS 555
QD + I VD K+ + L + + K +EK+ L+ + + + ++F S+
Sbjct: 206 QDPMEI----FVDDETKLTL-HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQ 260
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615
L QLL + +H M Q +RL +F+D IL+AT++ RG+DI +
Sbjct: 261 RCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 320
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+Y +P S+ Y+HR R R +GL + + SDE
Sbjct: 321 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV-SDE 356
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNK-CPHILVATPG- 1412
L++ TRELA Q+ KY P VKVA GG+S +K +L K CPHI+V TPG
Sbjct: 78 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGR 137
Query: 1413 ALSLKR 1418
L+L R
Sbjct: 138 ILALAR 143
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 113/414 (27%), Positives = 185/414 (44%), Gaps = 77/414 (18%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L +L
Sbjct: 17 PE-LLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATL----QQL 70
Query: 836 ENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E T ++ L++ TRELA Q+
Sbjct: 71 EPVT-----------------------------------GQVSVLVMCHTRELAFQISKE 95
Query: 896 ILDAGKYTP-VKVACVVGGMSTEKQLRILNK-CPHILVATPGRLWEFIQLGHFHLTELYK 953
KY P VKVA GG+S +K +L K CPHI+V TPGR+ + L L
Sbjct: 96 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI---LALARNKSLNLKH 152
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXX 1013
I + ++DE D+M+E +++ + MT +Q +FSATL+
Sbjct: 153 IKHFILDECDKMLE--QLDMRRDVQEIFRMT--PHEKQVMMFSATLSKEIR--------- 199
Query: 1014 XXXXXXXXXDPSIKR-LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
P ++ +QD + I VD K+ + L + + K +EK+ L+
Sbjct: 200 ----------PVCRKFMQDPMEI----FVDDETKLTL-HGLQQYYVKLKDNEKNRKLFDL 244
Query: 1073 I-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + + ++F S+ L QLL + +H M Q +RL +F+D IL
Sbjct: 245 LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 304
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+AT++ RG+DI + +Y +P S+ Y+HR R R +GL + + SDE
Sbjct: 305 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV-SDE 357
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 46/194 (23%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L +L
Sbjct: 17 PE-LLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATL----QQL 70
Query: 219 ENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E T ++ L++ TRELA Q+
Sbjct: 71 EPVT-----------------------------------GQVSVLVMCHTRELAFQISKE 95
Query: 279 ILDAGKYTP-VKVACVVGGMSTEKQLRILNK-CPHILVATPGRLWEFIQLGHFHLTELYK 336
KY P VKVA GG+S +K +L K CPHI+V TPGR+ + L L
Sbjct: 96 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI---LALARNKSLNLKH 152
Query: 337 INYLVIDETDRMIE 350
I + ++DE D+M+E
Sbjct: 153 IKHFILDECDKMLE 166
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 15/217 (6%)
Query: 444 LNIKSPK--IVD----LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE-I 496
LN+K K I+D + E++ + + + E + H EK ++ L R +C + +
Sbjct: 148 LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH-EKQVMMFSATLSKEIRPVCRKFM 206
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSIS 555
QD + I VD K+ + L + + K +EK+ L+ + + + ++F S+
Sbjct: 207 QDPMEI----FVDDETKLTL-HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQ 261
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615
L QLL + +H M Q +RL +F+D IL+AT++ RG+DI +
Sbjct: 262 RCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+Y +P S+ Y+HR R R +GL + + SDE
Sbjct: 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV-SDE 357
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNK-CPHILVATPG- 1412
L++ TRELA Q+ KY P VKVA GG+S +K +L K CPHI+V TPG
Sbjct: 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGR 138
Query: 1413 ALSLKR 1418
L+L R
Sbjct: 139 ILALAR 144
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 113/414 (27%), Positives = 185/414 (44%), Gaps = 77/414 (18%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L +L
Sbjct: 17 PE-LLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATL----QQL 70
Query: 836 ENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
E T ++ L++ TRELA Q+
Sbjct: 71 EPVT-----------------------------------GQVSVLVMCHTRELAFQISKE 95
Query: 896 ILDAGKYTP-VKVACVVGGMSTEKQLRILNK-CPHILVATPGRLWEFIQLGHFHLTELYK 953
KY P VKVA GG+S +K +L K CPHI+V TPGR+ + L L
Sbjct: 96 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI---LALARNKSLNLKH 152
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXX 1013
I + ++DE D+M+E +++ + MT +Q +FSATL+
Sbjct: 153 IKHFILDECDKMLE--QLDMRRDVQEIFRMT--PHEKQVMMFSATLSKEIR--------- 199
Query: 1014 XXXXXXXXXDPSIKR-LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
P ++ +QD + I VD K+ + L + + K +EK+ L+
Sbjct: 200 ----------PVCRKFMQDPMEI----FVDDETKLTL-HGLQQYYVKLKDNEKNRKLFDL 244
Query: 1073 I-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ + + ++F S+ L QLL + +H M Q +RL +F+D IL
Sbjct: 245 LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 304
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
+AT++ RG+DI + +Y +P S+ Y+HR R R +GL + + SDE
Sbjct: 305 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV-SDE 357
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 46/194 (23%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L +L
Sbjct: 17 PE-LLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATL----QQL 70
Query: 219 ENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
E T ++ L++ TRELA Q+
Sbjct: 71 EPVT-----------------------------------GQVSVLVMCHTRELAFQISKE 95
Query: 279 ILDAGKYTP-VKVACVVGGMSTEKQLRILNK-CPHILVATPGRLWEFIQLGHFHLTELYK 336
KY P VKVA GG+S +K +L K CPHI+V TPGR+ + L L
Sbjct: 96 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI---LALARNKSLNLKH 152
Query: 337 INYLVIDETDRMIE 350
I + ++DE D+M+E
Sbjct: 153 IKHFILDECDKMLE 166
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 15/217 (6%)
Query: 444 LNIKSPK--IVD----LTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE-I 496
LN+K K I+D + E++ + + + E + H EK ++ L R +C + +
Sbjct: 148 LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH-EKQVMMFSATLSKEIRPVCRKFM 206
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSIS 555
QD + I VD K+ + L + + K +EK+ L+ + + + ++F S+
Sbjct: 207 QDPMEI----FVDDETKLTL-HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQ 261
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615
L QLL + +H M Q +RL +F+D IL+AT++ RG+DI +
Sbjct: 262 RCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+Y +P S+ Y+HR R R +GL + + SDE
Sbjct: 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV-SDE 357
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNK-CPHILVATPG- 1412
L++ TRELA Q+ KY P VKVA GG+S +K +L K CPHI+V TPG
Sbjct: 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGR 138
Query: 1413 ALSLKR 1418
L+L R
Sbjct: 139 ILALAR 144
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 185/410 (45%), Gaps = 63/410 (15%)
Query: 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXX 849
TP + Q + P D++ A+TG+GKT AF IPI ++N
Sbjct: 45 TPVQ-QKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---------------- 87
Query: 850 XXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKV 907
T+F ++ + A+I+APTR+LA+Q++ + + Y K
Sbjct: 88 -----------------TKF--DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKY 128
Query: 908 ACV--VGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHFHLTELYK-INYLVIDETD 963
ACV VGG + +NK P+I++ATPGRL + ++ + + ++ ++Y V+DE D
Sbjct: 129 ACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVLDEAD 185
Query: 964 RMIESGHFPELKNILDRVTM--TETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXX 1021
R++E G +L+ I + ++++ +T +FSATL
Sbjct: 186 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDT 245
Query: 1022 XDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 1081
D + + ++ + V ++EK + I + E+DS + +
Sbjct: 246 VDKNEPEAHERID----QSVVISEKFANSIFAAVEHIKKQIKERDSNY---------KAI 292
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPL---HASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+F ++ L +L LP+ H + Q +R + RF+ + IL+ TDV A
Sbjct: 293 IFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA 352
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
RG+D P + V+ VP YIHR GRTAR+ EG +++ I DE+P
Sbjct: 353 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF 402
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
L H + Q +R + RF+ + IL+ TDV ARG+D P + V+ VP YIHR
Sbjct: 319 LEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 378
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTAR+ EG +V+ I DE+P
Sbjct: 379 IGRTARSGKEGSSVLFICKDELPF 402
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 45/194 (23%)
Query: 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXX 232
TP + Q + P D++ A+TG+GKT AF IPI ++N
Sbjct: 45 TPVQ-QKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---------------- 87
Query: 233 XXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKV 290
T+F ++ + A+I+APTR+LA+Q++ + + Y K
Sbjct: 88 -----------------TKF--DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKY 128
Query: 291 ACV--VGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHFHLTELYK-INYLVIDETD 346
ACV VGG + +NK P+I++ATPGRL + ++ + + ++ ++Y V+DE D
Sbjct: 129 ACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVLDEAD 185
Query: 347 RMIESGHFPELKNI 360
R++E G +L+ I
Sbjct: 186 RLLEIGFRDDLETI 199
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 1336 LIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHI--LDAGKYTPVKVACV--VGGM 1391
LI Q LI + +Y A+I+APTR+LA+Q++ + + Y K ACV VGG
Sbjct: 78 LIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 137
Query: 1392 STEKQLRILNKC-PHILVATPGAL 1414
+ +NK P+I++ATPG L
Sbjct: 138 DFRAAMNKMNKLRPNIVIATPGRL 161
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPL 1267
N++HR GRTAR+ EG +++ I DE+P
Sbjct: 374 NYIHRIGRTARSGKEGSSVLFICKDELPF 402
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 127 bits (318), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 185/410 (45%), Gaps = 63/410 (15%)
Query: 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXX 849
TP + Q + P D++ A+TG+GKT AF IPI ++N
Sbjct: 96 TPVQ-QKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---------------- 138
Query: 850 XXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKV 907
T+F ++ + A+I+APTR+LA+Q++ + + Y K
Sbjct: 139 -----------------TKF--DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKY 179
Query: 908 ACV--VGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHFHLTELYK-INYLVIDETD 963
ACV VGG + +NK P+I++ATPGRL + ++ + + ++ ++Y V+DE D
Sbjct: 180 ACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVLDEAD 236
Query: 964 RMIESGHFPELKNILDRVTM--TETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXX 1021
R++E G +L+ I + ++++ +T +FSATL
Sbjct: 237 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDT 296
Query: 1022 XDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 1081
D + + ++ + V ++EK + I + E+DS + +
Sbjct: 297 VDKNEPEAHERID----QSVVISEKFANSIFAAVEHIKKQIKERDSNY---------KAI 343
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPL---HASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+F ++ L +L LP+ H + Q +R + RF+ + IL+ TDV A
Sbjct: 344 IFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA 403
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
RG+D P + V+ VP YIHR GRTAR+ EG +++ I DE+P
Sbjct: 404 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF 453
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
L H + Q +R + RF+ + IL+ TDV ARG+D P + V+ VP YIHR
Sbjct: 370 LEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 429
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTAR+ EG +V+ I DE+P
Sbjct: 430 IGRTARSGKEGSSVLFICKDELPF 453
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 45/194 (23%)
Query: 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXX 232
TP + Q + P D++ A+TG+GKT AF IPI ++N
Sbjct: 96 TPVQ-QKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---------------- 138
Query: 233 XXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKV 290
T+F ++ + A+I+APTR+LA+Q++ + + Y K
Sbjct: 139 -----------------TKF--DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKY 179
Query: 291 ACV--VGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHFHLTELYK-INYLVIDETD 346
ACV VGG + +NK P+I++ATPGRL + ++ + + ++ ++Y V+DE D
Sbjct: 180 ACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVLDEAD 236
Query: 347 RMIESGHFPELKNI 360
R++E G +L+ I
Sbjct: 237 RLLEIGFRDDLETI 250
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 1336 LIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHI--LDAGKYTPVKVACV--VGGM 1391
LI Q LI + +Y A+I+APTR+LA+Q++ + + Y K ACV VGG
Sbjct: 129 LIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 188
Query: 1392 STEKQLRILNKC-PHILVATPGAL 1414
+ +NK P+I++ATPG L
Sbjct: 189 DFRAAMNKMNKLRPNIVIATPGRL 212
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPL 1267
N++HR GRTAR+ EG +++ I DE+P
Sbjct: 425 NYIHRIGRTARSGKEGSSVLFICKDELPF 453
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound
To Ssrna And Amp-Pnp
Length = 512
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 185/410 (45%), Gaps = 63/410 (15%)
Query: 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXX 849
TP + Q + P D++ A+TG+GKT AF IPI ++N
Sbjct: 45 TPVQ-QKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---------------- 87
Query: 850 XXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKV 907
T+F ++ + A+I+APTR+LA+Q++ + + Y K
Sbjct: 88 -----------------TKF--DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKY 128
Query: 908 ACV--VGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHFHLTELYK-INYLVIDETD 963
ACV VGG + +NK P+I++ATPGRL + ++ + + ++ ++Y V+DE D
Sbjct: 129 ACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVLDEAD 185
Query: 964 RMIESGHFPELKNILDRVTM--TETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXX 1021
R++E G +L+ I + ++++ +T +FSATL
Sbjct: 186 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDT 245
Query: 1022 XDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 1081
D + + ++ + V ++EK + I + E+DS + +
Sbjct: 246 VDKNEPEAHERID----QSVVISEKFANSIFAAVEHIKKQIKERDSNY---------KAI 292
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPL---HASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+F ++ L +L LP+ H + Q +R + RF+ + IL+ TDV A
Sbjct: 293 IFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA 352
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
RG+D P + V+ VP YIHR GRTAR+ EG +++ I DE+P
Sbjct: 353 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF 402
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
L H + Q +R + RF+ + IL+ TDV ARG+D P + V+ VP YIHR
Sbjct: 319 LEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 378
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTAR+ EG +V+ I DE+P
Sbjct: 379 IGRTARSGKEGSSVLFICKDELPF 402
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 45/194 (23%)
Query: 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXX 232
TP + Q + P D++ A+TG+GKT AF IPI ++N
Sbjct: 45 TPVQ-QKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---------------- 87
Query: 233 XXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKV 290
T+F ++ + A+I+APTR+LA+Q++ + + Y K
Sbjct: 88 -----------------TKF--DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKY 128
Query: 291 ACV--VGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHFHLTELYK-INYLVIDETD 346
ACV VGG + +NK P+I++ATPGRL + ++ + + ++ ++Y V+DE D
Sbjct: 129 ACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVLDEAD 185
Query: 347 RMIESGHFPELKNI 360
R++E G +L+ I
Sbjct: 186 RLLEIGFRDDLETI 199
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 1336 LIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHI--LDAGKYTPVKVACV--VGGM 1391
LI Q LI + +Y A+I+APTR+LA+Q++ + + Y K ACV VGG
Sbjct: 78 LIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 137
Query: 1392 STEKQLRILNKC-PHILVATPGAL 1414
+ +NK P+I++ATPG L
Sbjct: 138 DFRAAMNKMNKLRPNIVIATPGRL 161
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPL 1267
N++HR GRTAR+ EG +++ I DE+P
Sbjct: 374 NYIHRIGRTARSGKEGSSVLFICKDELPF 402
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 116 bits (291), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 112/229 (48%), Gaps = 49/229 (21%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 48 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 105
Query: 833 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 892
LE P +L+AL+L PTRELA Q+
Sbjct: 106 --LETP------------------------------------QRLFALVLTPTRELAFQI 127
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 951
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 128 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 187
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000
YLV+DE DR++ E+ IL + + R+TF+FSAT+T
Sbjct: 188 ---KYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMT 228
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 113/257 (43%), Gaps = 77/257 (29%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 48 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL- 105
Query: 216 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 275
LE P +L+AL+L PTRELA Q+
Sbjct: 106 --LETP------------------------------------QRLFALVLTPTRELAFQI 127
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTEL 334
G V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L L
Sbjct: 128 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 187
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
YLV+DE DR++ E+ IL + PR
Sbjct: 188 ---KYLVMDEADRILNMDFETEVDKILKVI-------PRD-------------------- 217
Query: 395 TETSQPRQTFVFSATLT 411
R+TF+FSAT+T
Sbjct: 218 ------RKTFLFSATMT 228
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL 172
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 171/399 (42%), Gaps = 85/399 (21%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N+ E+++R +Y GF+ P+ IQ ++P + D++ A++G+GKT F I IL I
Sbjct: 19 MNLSESLLRGIYAYGFEKPSAIQQRAILPC--IKGYDVIAQAQSGTGKTATFAISILQQI 76
Query: 832 VNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQ 891
L K T+ AL+LAPTRELA Q
Sbjct: 77 ELDL-----------------------------------KATQ----ALVLAPTRELAQQ 97
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPGRLWEFIQLGHFHLTE 950
+Q ++ G Y +GG + +++ L + PHI+V TPGR+++ L +L+
Sbjct: 98 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDM--LNRRYLSP 155
Query: 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXX 1010
Y I V+DE D M+ G ++ +I ++ + Q + SAT+
Sbjct: 156 KY-IKMFVLDEADEMLSRGFKDQIYDIFQKL-----NSNTQVVLLSATMPSDVLEVTKKF 209
Query: 1011 XXXXXXXXXXXXDPSIKRL-QDLLNI-----KSPKIVDLTEKIGITKTLTESKILCKHDE 1064
+ +++ + Q +N+ K + DL E + IT+ +
Sbjct: 210 MRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAV----------- 258
Query: 1065 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
+F N+ V LT+ + + +H M+Q++R + FR
Sbjct: 259 -----------------IFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 301
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
++ +L+ TD+ ARG+D+ + VI+Y +P E YIH
Sbjct: 302 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 340
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 46/211 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N+ E+++R +Y GF+ P+ IQ ++P + D++ A++G+GKT F I IL I
Sbjct: 19 MNLSESLLRGIYAYGFEKPSAIQQRAILPC--IKGYDVIAQAQSGTGKTATFAISILQQI 76
Query: 215 VNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQ 274
L K T+ AL+LAPTRELA Q
Sbjct: 77 ELDL-----------------------------------KATQ----ALVLAPTRELAQQ 97
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPGRLWEFIQLGHFHLTE 333
+Q ++ G Y +GG + +++ L + PHI+V TPGR+++ L +L+
Sbjct: 98 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDM--LNRRYLSP 155
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRV 364
Y I V+DE D M+ G ++ +I ++
Sbjct: 156 KY-IKMFVLDEADEMLSRGFKDQIYDIFQKL 185
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ ++F N+ V LT+ + + +H M+Q++R + FR ++ +L+ TD+ A
Sbjct: 256 QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 315
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIH 630
RG+D+ + VI+Y +P E YIH
Sbjct: 316 RGIDVQQVSLVINYDLPTNRENYIH 340
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPG 1412
AL+LAPTRELA Q+Q ++ G Y +GG + +++ L + PHI+V TPG
Sbjct: 85 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPG 142
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 171/399 (42%), Gaps = 85/399 (21%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N+ E+++R +Y GF+ P+ IQ ++P + D++ A++G+GKT F I IL I
Sbjct: 45 MNLSESLLRGIYAYGFEKPSAIQQRAILPC--IKGYDVIAQAQSGTGKTATFAISILQQI 102
Query: 832 VNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQ 891
L K T+ AL+LAPTRELA Q
Sbjct: 103 ELDL-----------------------------------KATQ----ALVLAPTRELAQQ 123
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPGRLWEFIQLGHFHLTE 950
+Q ++ G Y +GG + +++ L + PHI+V TPGR+++ L +L+
Sbjct: 124 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDM--LNRRYLSP 181
Query: 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXX 1010
Y I V+DE D M+ G ++ +I ++ + Q + SAT+
Sbjct: 182 KY-IKMFVLDEADEMLSRGFKDQIYDIFQKL-----NSNTQVVLLSATMPSDVLEVTKKF 235
Query: 1011 XXXXXXXXXXXXDPSIKRL-QDLLNI-----KSPKIVDLTEKIGITKTLTESKILCKHDE 1064
+ +++ + Q +N+ K + DL E + IT+ +
Sbjct: 236 MRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAV----------- 284
Query: 1065 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
+F N+ V LT+ + + +H M+Q++R + FR
Sbjct: 285 -----------------IFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 327
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
++ +L+ TD+ ARG+D+ + VI+Y +P E YIH
Sbjct: 328 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 366
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 46/211 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N+ E+++R +Y GF+ P+ IQ ++P + D++ A++G+GKT F I IL I
Sbjct: 45 MNLSESLLRGIYAYGFEKPSAIQQRAILPC--IKGYDVIAQAQSGTGKTATFAISILQQI 102
Query: 215 VNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQ 274
L K T+ AL+LAPTRELA Q
Sbjct: 103 ELDL-----------------------------------KATQ----ALVLAPTRELAQQ 123
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPGRLWEFIQLGHFHLTE 333
+Q ++ G Y +GG + +++ L + PHI+V TPGR+++ L +L+
Sbjct: 124 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDM--LNRRYLSP 181
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRV 364
Y I V+DE D M+ G ++ +I ++
Sbjct: 182 KY-IKMFVLDEADEMLSRGFKDQIYDIFQKL 211
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ ++F N+ V LT+ + + +H M+Q++R + FR ++ +L+ TD+ A
Sbjct: 282 QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 341
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIH 630
RG+D+ + VI+Y +P E YIH
Sbjct: 342 RGIDVQQVSLVINYDLPTNRENYIH 366
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPG 1412
AL+LAPTRELA Q+Q ++ G Y +GG + +++ L + PHI+V TPG
Sbjct: 111 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPG 168
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 113/225 (50%), Gaps = 39/225 (17%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
I I+ A YQ+ PT IQ +P A+L +DI+ A+TGSGKT AF IPI+ +V +
Sbjct: 34 IRNNILLASYQR----PTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88
Query: 835 LENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
N + K K LILAPTRELAIQ+ +
Sbjct: 89 ----------------------------DLNQQRYSKTAYPK--CLILAPTRELAIQILS 118
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
TP++ V GG T Q+R + H+LVATPGRL +FI+ L E K
Sbjct: 119 ESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISL-EFCK- 176
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
Y+V+DE DRM++ G P+++ I++ M + RQT +FSAT
Sbjct: 177 -YIVLDEADRMLDMGFEPQIRKIIEESNM-PSGINRQTLMFSATF 219
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 114/227 (50%), Gaps = 39/227 (17%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
I I+ A YQ+ PT IQ +P A+L +DI+ A+TGSGKT AF IPI+ +V +
Sbjct: 34 IRNNILLASYQR----PTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88
Query: 218 LENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
N + K K LILAPTRELAIQ+ +
Sbjct: 89 ----------------------------DLNQQRYSKTAYPK--CLILAPTRELAIQILS 118
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
TP++ V GG T Q+R + H+LVATPGRL +FI+ L E K
Sbjct: 119 ESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISL-EFCK- 176
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
Y+V+DE DRM++ G P+++ I++ M + RQT++ S FP+
Sbjct: 177 -YIVLDEADRMLDMGFEPQIRKIIEESNM-PSGINRQTLMFSATFPK 221
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 1340 NQLLIFESRNLRYSWDA----LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK 1395
N L+ + RYS A LILAPTRELAIQ+ + TP++ V GG T
Sbjct: 83 NHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHS 142
Query: 1396 QLRILNKCPHILVATPGAL 1414
Q+R + H+LVATPG L
Sbjct: 143 QIREVQMGCHLLVATPGRL 161
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 43/225 (19%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
N P ++ + ++ F PT IQ+ P AL + D+VG A+TGSGKTL++ +P + I
Sbjct: 49 NFPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHI-- 105
Query: 834 KLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
N F+++ + L+LAPTRELA QVQ
Sbjct: 106 -------------------------------NHQPFLERGDGPI-CLVLAPTRELAQQVQ 133
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
+ + +K C+ GG Q+R L + I +ATPGRL +F++ G T L +
Sbjct: 134 QVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK---TNLRR 190
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 191 TTYLVLDEADRMLDMGFEPQIRKIVDQIRPD-----RQTLMWSAT 230
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 43/228 (18%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
N P ++ + ++ F PT IQ+ P AL + D+VG A+TGSGKTL++ +P + I
Sbjct: 49 NFPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHI-- 105
Query: 217 KLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
N F+++ + L+LAPTRELA QVQ
Sbjct: 106 -------------------------------NHQPFLERGDGPI-CLVLAPTRELAQQVQ 133
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
+ + +K C+ GG Q+R L + I +ATPGRL +F++ G T L +
Sbjct: 134 QVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK---TNLRR 190
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
YLV+DE DRM++ G P+++ I+D++ RQT++ S +P+
Sbjct: 191 TTYLVLDEADRMLDMGFEPQIRKIVDQIRPD-----RQTLMWSATWPK 233
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ + + +K C+ GG Q+R L + I +ATPG L
Sbjct: 119 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 177
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 43/225 (19%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
N P ++ + ++ F PT IQ+ P AL + D+VG A+TGSGKTL++ +P + I
Sbjct: 35 NFPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHI-- 91
Query: 834 KLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
N F+++ + L+LAPTRELA QVQ
Sbjct: 92 -------------------------------NHQPFLERGDGPI-CLVLAPTRELAQQVQ 119
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
+ + +K C+ GG Q+R L + I +ATPGRL +F++ G T L +
Sbjct: 120 QVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK---TNLRR 176
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 177 TTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDRQTLMWSAT 216
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 43/228 (18%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
N P ++ + ++ F PT IQ+ P AL + D+VG A+TGSGKTL++ +P + I
Sbjct: 35 NFPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHI-- 91
Query: 217 KLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
N F+++ + L+LAPTRELA QVQ
Sbjct: 92 -------------------------------NHQPFLERGDGPI-CLVLAPTRELAQQVQ 119
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
+ + +K C+ GG Q+R L + I +ATPGRL +F++ G T L +
Sbjct: 120 QVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK---TNLRR 176
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
YLV+DE DRM++ G P+++ I+D++ RQT++ S +P+
Sbjct: 177 TTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDRQTLMWSATWPK 219
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ + + +K C+ GG Q+R L + I +ATPG L
Sbjct: 105 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 163
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 168/390 (43%), Gaps = 73/390 (18%)
Query: 775 IPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+ E ++R ++ GF+ P+ IQ +MP ++ D++ A++G+GKT F I L I
Sbjct: 29 LDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTFSIAALQRIDT 86
Query: 834 KLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
++ P AL+LAPTRELA+Q+Q
Sbjct: 87 SVKAPQ---------------------------------------ALMLAPTRELALQIQ 107
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
++ + +KV +GG S + L I+V TPGR+++ IQ F K
Sbjct: 108 KVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTD---K 163
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXX 1013
I ++DE D M+ SG ++ I + T Q + SAT+ +
Sbjct: 164 IKMFILDEADEMLSSGFKEQIYQIFTLLPPT-----TQVVLLSATMPNDVLEVTTKFMRN 218
Query: 1014 XXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073
+ +++ ++ V++ E+ E K C D DS
Sbjct: 219 PVRILVKKDELTLEGIKQFY-------VNVEEE--------EYKYECLTDLYDSI----- 258
Query: 1074 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+ ++FCN+ V+ LT L K + +++ + Q++R + FR ++ IL++
Sbjct: 259 --SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 316
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
TD+ ARG+D+ + VI+Y +P E YIH
Sbjct: 317 TDLLARGIDVQQVSLVINYDLPANKENYIH 346
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 46/205 (22%)
Query: 158 IPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+ E ++R ++ GF+ P+ IQ +MP ++ D++ A++G+GKT F I L I
Sbjct: 29 LDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTFSIAALQRIDT 86
Query: 217 KLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
++ P AL+LAPTRELA+Q+Q
Sbjct: 87 SVKAPQ---------------------------------------ALMLAPTRELALQIQ 107
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
++ + +KV +GG S + L I+V TPGR+++ IQ F K
Sbjct: 108 KVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTD---K 163
Query: 337 INYLVIDETDRMIESGHFPELKNIL 361
I ++DE D M+ SG ++ I
Sbjct: 164 IKMFILDEADEMLSSGFKEQIYQIF 188
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ ++FCN+ V+ LT L K + +++ + Q++R + FR ++ IL++TD+ A
Sbjct: 262 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 321
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIH 630
RG+D+ + VI+Y +P E YIH
Sbjct: 322 RGIDVQQVSLVINYDLPANKENYIH 346
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L I+V TPG
Sbjct: 93 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPG 148
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With
The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex With
The Dead- Box Helicase Ddx19
Length = 479
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/421 (24%), Positives = 175/421 (41%), Gaps = 94/421 (22%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+++ +Y GF P+KIQ +P +LA ++++ +++G+GKT AF + +L+ + +
Sbjct: 103 LLQGVYAMGFNRPSKIQENALP-LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 161
Query: 837 NPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
P L L+PT ELA+Q I
Sbjct: 162 YPQ---------------------------------------CLCLSPTYELALQTGKVI 182
Query: 897 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
GK+ P +K+A V G E+ +I I++ TPG + ++ + KI
Sbjct: 183 EQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWC--SKLKFIDPKKIK 237
Query: 956 YLVIDETDRMIES-GHFPELKNILDRVTMTETSQPR--QTFVFSATLTHXXXXXXXXXXX 1012
V+DE D MI + GH D+ + PR Q +FSAT
Sbjct: 238 VFVLDEADVMIATQGH-------QDQSIRIQRMLPRNCQMLLFSATF------------- 277
Query: 1013 XXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYL-- 1069
D K Q + + P ++ L + T+ + +LC DEK L
Sbjct: 278 ---------EDSVWKFAQKV--VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 326
Query: 1070 -YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y I + ++FC++ + L L+ L M QR ++RFR+
Sbjct: 327 LYGAIT--IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 384
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPR------TSEIYIHRSGRTARANNEGLTLVLIE 1182
+L+ T+V ARG+D+ + VI++ +P +E Y+HR GRT R GL + +++
Sbjct: 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444
Query: 1183 S 1183
S
Sbjct: 445 S 445
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYL---YYFILQHPGRTLVFCNSISSV 557
+ P ++ L + T+ + +LC DEK L Y I + ++FC++ +
Sbjct: 289 VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAIT--IAQAMIFCHTRKTA 346
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617
L L+ L M QR ++RFR+ +L+ T+V ARG+D+ + VI
Sbjct: 347 SWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 406
Query: 618 HYHVPR------TSEIYIHRSGRTARANNEGLTVVLIES 650
++ +P +E Y+HR GRT R GL V +++S
Sbjct: 407 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 445
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 49/196 (25%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+++ +Y GF P+KIQ +P +LA ++++ +++G+GKT AF + +L+ + +
Sbjct: 103 LLQGVYAMGFNRPSKIQENALP-LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 161
Query: 220 NPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
P L L+PT ELA+Q I
Sbjct: 162 YPQ---------------------------------------CLCLSPTYELALQTGKVI 182
Query: 280 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
GK+ P +K+A V G E+ +I I++ TPG + ++ + KI
Sbjct: 183 EQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWC--SKLKFIDPKKIK 237
Query: 339 YLVIDETDRMIES-GH 353
V+DE D MI + GH
Sbjct: 238 VFVLDEADVMIATQGH 253
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L L+PT ELA+Q I GK+ P +K+A V G E+ +I I++ TPG +
Sbjct: 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTV 221
Query: 1415 SLKRIDLAKSIEYLESK 1431
+D +++++ K
Sbjct: 222 ----LDWCSKLKFIDPK 234
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 162/389 (41%), Gaps = 71/389 (18%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ E ++R ++ GF+ P+ IQ + ++ D++ A++G+GKT F I L I
Sbjct: 28 LDENLLRGVFGYGFEEPSAIQQRAI-XPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS 86
Query: 835 LENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
++ P AL LAPTRELA+Q+Q
Sbjct: 87 VKAPQ---------------------------------------ALXLAPTRELALQIQK 107
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
+ + +KV +GG S + L I+V TPGR+++ IQ F KI
Sbjct: 108 VVXALAFHXDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTD---KI 163
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXX 1014
++DE D + SG ++ I + T Q + SAT +
Sbjct: 164 KXFILDEADEXLSSGFKEQIYQIFTLLPPT-----TQVVLLSATXPNDVLEVTTKFXRNP 218
Query: 1015 XXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
+ +++ ++ V++ E+ E K C D DS
Sbjct: 219 VRILVKKDELTLEGIKQFY-------VNVEEE--------EYKYECLTDLYDSI------ 257
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
+ ++FCN+ V+ LT L K + +++ + Q++R FR ++ IL++T
Sbjct: 258 -SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILIST 316
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
D+ ARG+D+ + VI+Y +P E YIH
Sbjct: 317 DLLARGIDVQQVSLVINYDLPANKENYIH 345
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 44/204 (21%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ E ++R ++ GF+ P+ IQ + ++ D++ A++G+GKT F I L I
Sbjct: 28 LDENLLRGVFGYGFEEPSAIQQRAI-XPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS 86
Query: 218 LENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
++ P AL LAPTRELA+Q+Q
Sbjct: 87 VKAPQ---------------------------------------ALXLAPTRELALQIQK 107
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
+ + +KV +GG S + L I+V TPGR+++ IQ F KI
Sbjct: 108 VVXALAFHXDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTD---KI 163
Query: 338 NYLVIDETDRMIESGHFPELKNIL 361
++DE D + SG ++ I
Sbjct: 164 KXFILDEADEXLSSGFKEQIYQIF 187
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ ++FCN+ V+ LT L K + +++ + Q++R FR ++ IL++TD+ A
Sbjct: 261 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLA 320
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIH 630
RG+D+ + VI+Y +P E YIH
Sbjct: 321 RGIDVQQVSLVINYDLPANKENYIH 345
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL LAPTRELA+Q+Q + + +KV +GG S + L I+V TPG
Sbjct: 92 ALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPG 147
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/419 (24%), Positives = 174/419 (41%), Gaps = 90/419 (21%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+++ +Y GF P+KIQ +P +LA ++++ +++G+GKT AF + +L+ + +
Sbjct: 73 LLQGVYAMGFNRPSKIQENALP-LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 131
Query: 837 NPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
P L L+PT ELA+Q I
Sbjct: 132 YPQ---------------------------------------CLCLSPTYELALQTGKVI 152
Query: 897 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
GK+ P +K+A V G E+ +I I++ TPG + ++ + KI
Sbjct: 153 EQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWC--SKLKFIDPKKIK 207
Query: 956 YLVIDETDRMIES-GHFPELKNILDRVTMTETSQPR--QTFVFSATLTHXXXXXXXXXXX 1012
V+DE D MI + GH D+ + PR Q +FSAT
Sbjct: 208 VFVLDEADVMIATQGH-------QDQSIRIQRMLPRNCQMLLFSATF------------- 247
Query: 1013 XXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLY- 1070
D K Q + + P ++ L + T+ + +LC DEK L
Sbjct: 248 ---------EDSVWKFAQKV--VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 296
Query: 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + ++FC++ + L L+ L M QR ++RFR+ +
Sbjct: 297 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 356
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPR------TSEIYIHRSGRTARANNEGLTLVLIES 1183
L+ T+V ARG+D+ + VI++ +P +E Y+HR GRT R GL + +++S
Sbjct: 357 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 415
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 8/157 (5%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLY-YFILQHPGRTLVFCNSISSVKR 559
+ P ++ L + T+ + +LC DEK L + + ++FC++ +
Sbjct: 259 VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW 318
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L L+ L M QR ++RFR+ +L+ T+V ARG+D+ + VI++
Sbjct: 319 LAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINF 378
Query: 620 HVPR------TSEIYIHRSGRTARANNEGLTVVLIES 650
+P +E Y+HR GRT R GL V +++S
Sbjct: 379 DLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 415
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 49/196 (25%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+++ +Y GF P+KIQ +P +LA ++++ +++G+GKT AF + +L+ + +
Sbjct: 73 LLQGVYAMGFNRPSKIQENALP-LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 131
Query: 220 NPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
P L L+PT ELA+Q I
Sbjct: 132 YPQ---------------------------------------CLCLSPTYELALQTGKVI 152
Query: 280 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
GK+ P +K+A V G E+ +I I++ TPG + ++ + KI
Sbjct: 153 EQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWC--SKLKFIDPKKIK 207
Query: 339 YLVIDETDRMIES-GH 353
V+DE D MI + GH
Sbjct: 208 VFVLDEADVMIATQGH 223
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L L+PT ELA+Q I GK+ P +K+A V G E+ +I I++ TPG +
Sbjct: 135 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTV 191
Query: 1415 SLKRIDLAKSIEYLESK 1431
+D +++++ K
Sbjct: 192 ----LDWCSKLKFIDPK 204
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/419 (24%), Positives = 174/419 (41%), Gaps = 90/419 (21%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+++ +Y GF P+KIQ +P +LA ++++ +++G+GKT AF + +L+ + +
Sbjct: 52 LLQGVYAMGFNRPSKIQENALP-LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 110
Query: 837 NPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
P L L+PT ELA+Q I
Sbjct: 111 YPQ---------------------------------------CLCLSPTYELALQTGKVI 131
Query: 897 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
GK+ P +K+A V G E+ +I I++ TPG + ++ + KI
Sbjct: 132 EQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWC--SKLKFIDPKKIK 186
Query: 956 YLVIDETDRMIES-GHFPELKNILDRVTMTETSQPR--QTFVFSATLTHXXXXXXXXXXX 1012
V+DE D MI + GH D+ + PR Q +FSAT
Sbjct: 187 VFVLDEADVMIATQGH-------QDQSIRIQRMLPRNCQMLLFSATF------------- 226
Query: 1013 XXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLY- 1070
D K Q + + P ++ L + T+ + +LC DEK L
Sbjct: 227 ---------EDSVWKFAQKV--VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 275
Query: 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + ++FC++ + L L+ L M QR ++RFR+ +
Sbjct: 276 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 335
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPR------TSEIYIHRSGRTARANNEGLTLVLIES 1183
L+ T+V ARG+D+ + VI++ +P +E Y+HR GRT R GL + +++S
Sbjct: 336 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 394
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 8/157 (5%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLY-YFILQHPGRTLVFCNSISSVKR 559
+ P ++ L + T+ + +LC DEK L + + ++FC++ +
Sbjct: 238 VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW 297
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L L+ L M QR ++RFR+ +L+ T+V ARG+D+ + VI++
Sbjct: 298 LAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINF 357
Query: 620 HVPR------TSEIYIHRSGRTARANNEGLTVVLIES 650
+P +E Y+HR GRT R GL V +++S
Sbjct: 358 DLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 394
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 49/196 (25%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+++ +Y GF P+KIQ +P +LA ++++ +++G+GKT AF + +L+ + +
Sbjct: 52 LLQGVYAMGFNRPSKIQENALP-LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 110
Query: 220 NPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
P L L+PT ELA+Q I
Sbjct: 111 YPQ---------------------------------------CLCLSPTYELALQTGKVI 131
Query: 280 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
GK+ P +K+A V G E+ +I I++ TPG + ++ + KI
Sbjct: 132 EQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWC--SKLKFIDPKKIK 186
Query: 339 YLVIDETDRMIES-GH 353
V+DE D MI + GH
Sbjct: 187 VFVLDEADVMIATQGH 202
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L L+PT ELA+Q I GK+ P +K+A V G E+ +I I++ TPG +
Sbjct: 114 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTV 170
Query: 1415 SLKRIDLAKSIEYLESK 1431
+D +++++ K
Sbjct: 171 ----LDWCSKLKFIDPK 183
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/419 (24%), Positives = 174/419 (41%), Gaps = 90/419 (21%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+++ +Y GF P+KIQ +P +LA ++++ +++G+GKT AF + +L+ + +
Sbjct: 36 LLQGVYAMGFNRPSKIQENALP-LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 94
Query: 837 NPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
P L L+PT ELA+Q I
Sbjct: 95 YPQ---------------------------------------CLCLSPTYELALQTGKVI 115
Query: 897 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
GK+ P +K+A V G E+ +I I++ TPG + ++ + KI
Sbjct: 116 EQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWC--SKLKFIDPKKIK 170
Query: 956 YLVIDETDRMIES-GHFPELKNILDRVTMTETSQPR--QTFVFSATLTHXXXXXXXXXXX 1012
V+DE D MI + GH D+ + PR Q +FSAT
Sbjct: 171 VFVLDEADVMIATQGH-------QDQSIRIQRMLPRNCQMLLFSATF------------- 210
Query: 1013 XXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLY- 1070
D K Q + + P ++ L + T+ + +LC DEK L
Sbjct: 211 ---------EDSVWKFAQKV--VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 259
Query: 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ + ++FC++ + L L+ L M QR ++RFR+ +
Sbjct: 260 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 319
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPR------TSEIYIHRSGRTARANNEGLTLVLIES 1183
L+ T+V ARG+D+ + VI++ +P +E Y+HR GRT R GL + +++S
Sbjct: 320 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 378
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 8/157 (5%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLY-YFILQHPGRTLVFCNSISSVKR 559
+ P ++ L + T+ + +LC DEK L + + ++FC++ +
Sbjct: 222 VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW 281
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L L+ L M QR ++RFR+ +L+ T+V ARG+D+ + VI++
Sbjct: 282 LAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINF 341
Query: 620 HVPR------TSEIYIHRSGRTARANNEGLTVVLIES 650
+P +E Y+HR GRT R GL V +++S
Sbjct: 342 DLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 378
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 49/196 (25%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+++ +Y GF P+KIQ +P +LA ++++ +++G+GKT AF + +L+ + +
Sbjct: 36 LLQGVYAMGFNRPSKIQENALP-LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 94
Query: 220 NPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
P L L+PT ELA+Q I
Sbjct: 95 YPQ---------------------------------------CLCLSPTYELALQTGKVI 115
Query: 280 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
GK+ P +K+A V G E+ +I I++ TPG + ++ + KI
Sbjct: 116 EQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWC--SKLKFIDPKKIK 170
Query: 339 YLVIDETDRMIES-GH 353
V+DE D MI + GH
Sbjct: 171 VFVLDEADVMIATQGH 186
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L L+PT ELA+Q I GK+ P +K+A V G E+ +I I++ TPG +
Sbjct: 98 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTV 154
Query: 1415 SLKRIDLAKSIEYLESK 1431
+D +++++ K
Sbjct: 155 ----LDWCSKLKFIDPK 167
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 100 bits (248), Expect = 8e-21, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 113/231 (48%), Gaps = 47/231 (20%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
E+ F + I+ AL+ +G TPT IQ+ +P AL KD++G A TG+GKTLAF +PI
Sbjct: 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEG-KDLIGQARTGTGKTLAFALPIA 60
Query: 829 TGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTREL 888
+ A + E +K R AL+L PTREL
Sbjct: 61 ERL--------------------------------APSQERGRKPR----ALVLTPTREL 84
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+QV + + + +KV V GG KQ L + +VATPGR ++++ G +
Sbjct: 85 ALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---V 139
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+L ++ V+DE D M+ G E++ +L + T RQT +FSATL
Sbjct: 140 LDLSRVEVAVLDEADEMLSMGFEEEVEALL-----SATPPSRQTLLFSATL 185
Score = 94.7 bits (234), Expect = 3e-19, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 47/232 (20%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
E+ F + I+ AL+ +G TPT IQ+ +P AL KD++G A TG+GKTLAF +PI
Sbjct: 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEG-KDLIGQARTGTGKTLAFALPIA 60
Query: 212 TGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTREL 271
+ A + E +K R AL+L PTREL
Sbjct: 61 ERL--------------------------------APSQERGRKPR----ALVLTPTREL 84
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+QV + + + +KV V GG KQ L + +VATPGR ++++ G +
Sbjct: 85 ALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---V 139
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
+L ++ V+DE D M+ G E++ +L + T RQT++ S P
Sbjct: 140 LDLSRVEVAVLDEADEMLSMGFEEEVEALL-----SATPPSRQTLLFSATLP 186
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP---- 1411
AL+L PTRELA+QV + + + +KV V GG KQ L + +VATP
Sbjct: 75 ALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRAL 132
Query: 1412 -----GALSLKRIDLA 1422
G L L R+++A
Sbjct: 133 DYLRQGVLDLSRVEVA 148
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 113/231 (48%), Gaps = 47/231 (20%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
E+ F + I+ AL+ +G TPT I++ +P AL KD++G A TG+GKTLAF +PI
Sbjct: 2 EFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEG-KDLIGQARTGTGKTLAFALPIA 60
Query: 829 TGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTREL 888
+ A + E +K R AL+L PTREL
Sbjct: 61 ERL--------------------------------APSQERGRKPR----ALVLTPTREL 84
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A+QV + + + +KV V GG KQ L + +VATPGR ++++ G +
Sbjct: 85 ALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---V 139
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+L ++ V+DE D M+ G E++ +L + T RQT +FSATL
Sbjct: 140 LDLSRVEVAVLDEADEMLSMGFEEEVEALL-----SATPPSRQTLLFSATL 185
Score = 93.6 bits (231), Expect = 8e-19, Method: Composition-based stats.
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 47/232 (20%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
E+ F + I+ AL+ +G TPT I++ +P AL KD++G A TG+GKTLAF +PI
Sbjct: 2 EFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEG-KDLIGQARTGTGKTLAFALPIA 60
Query: 212 TGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTREL 271
+ A + E +K R AL+L PTREL
Sbjct: 61 ERL--------------------------------APSQERGRKPR----ALVLTPTREL 84
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A+QV + + + +KV V GG KQ L + +VATPGR ++++ G +
Sbjct: 85 ALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---V 139
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
+L ++ V+DE D M+ G E++ +L + T RQT++ S P
Sbjct: 140 LDLSRVEVAVLDEADEMLSMGFEEEVEALL-----SATPPSRQTLLFSATLP 186
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP---- 1411
AL+L PTRELA+QV + + + +KV V GG KQ L + +VATP
Sbjct: 75 ALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRAL 132
Query: 1412 -----GALSLKRIDLA 1422
G L L R+++A
Sbjct: 133 DYLRQGVLDLSRVEVA 148
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 52/235 (22%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ +F II A+ F PT+IQ ++P AL + VG ++TG+GKT A+ +PI
Sbjct: 5 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRG-ESXVGQSQTGTGKTHAYLLPI- 62
Query: 829 TGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTREL 888
E +K R ++ A+I APTREL
Sbjct: 63 --------------------------------------XEKIKPERAEVQAVITAPTREL 84
Query: 889 AIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944
A Q+ + L K+ P + C++GG +K L LN PHI++ TPGR+ +FI+
Sbjct: 85 ATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE- 143
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+++ + LV+DE D ++ G ++ I R + Q VFSAT+
Sbjct: 144 --QALDVHTAHILVVDEADLXLDXGFITDVDQIAAR-----XPKDLQXLVFSATI 191
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 47/216 (21%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ +F II A+ F PT+IQ ++P AL + VG ++TG+GKT A+ +PI
Sbjct: 5 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRG-ESXVGQSQTGTGKTHAYLLPI- 62
Query: 212 TGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTREL 271
E +K R ++ A+I APTREL
Sbjct: 63 --------------------------------------XEKIKPERAEVQAVITAPTREL 84
Query: 272 AIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327
A Q+ + L K+ P + C++GG +K L LN PHI++ TPGR+ +FI+
Sbjct: 85 ATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE- 143
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 363
+++ + LV+DE D ++ G ++ I R
Sbjct: 144 --QALDVHTAHILVVDEADLXLDXGFITDVDQIAAR 177
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKCPHI 1406
R A+I APTRELA Q+ + L K+ P + C++GG +K L LN PHI
Sbjct: 70 RAEVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPHI 129
Query: 1407 LVATPGALS 1415
++ TPG ++
Sbjct: 130 VIGTPGRIN 138
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/417 (22%), Positives = 171/417 (41%), Gaps = 88/417 (21%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
PE +++ +Y F+ P+KIQ +P L ++++ +++G+GKT AF + +LT + +
Sbjct: 14 PE-LLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE 72
Query: 835 LENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+P A+ LAP+RELA Q
Sbjct: 73 DASPQ---------------------------------------AICLAPSRELARQTLE 93
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
+ + GK+T + +V S EK +I ++V TPG + + ++ L +L KI
Sbjct: 94 VVQEMGKFTKITSQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLMRR---KLMQLQKI 146
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT--FVFSATLTHXXXXXXXXXXX 1012
V+DE D M++ + + D+ + P+ T +FSAT
Sbjct: 147 KIFVLDEADNMLDQ------QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVP 200
Query: 1013 XXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH--DEKDSYLY 1070
+ ++ ++ L + CK+ D+ D
Sbjct: 201 NANTLELQTNEVNVDAIKQLY------------------------MDCKNEADKFDVLTE 236
Query: 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
+ L G +++F + + L L LH + ++R + +D FR+ + +
Sbjct: 237 LYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKV 296
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSE------IYIHRSGRTARANNEGLTLVLI 1181
L+ T+V ARG+DIP + V++Y +P + YIHR GRT R +G+ + +
Sbjct: 297 LITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 353
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 527 CKH--DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
CK+ D+ D + L G +++F + + L L LH + ++R
Sbjct: 224 CKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 283
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE------IYIHRSGRTARA 638
+ +D FR+ + +L+ T+V ARG+DIP + V++Y +P + YIHR GRT R
Sbjct: 284 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 343
Query: 639 NNEGLTVVLIESDEIPLKTKFNL 661
+G+ + + K FN+
Sbjct: 344 GRKGVAISFVHD-----KNSFNI 361
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 48/193 (24%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
PE +++ +Y F+ P+KIQ +P L ++++ +++G+GKT AF + +LT + +
Sbjct: 14 PE-LLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE 72
Query: 218 LENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+P A+ LAP+RELA Q
Sbjct: 73 DASPQ---------------------------------------AICLAPSRELARQTLE 93
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
+ + GK+T + +V S EK +I ++V TPG + + ++ L +L KI
Sbjct: 94 VVQEMGKFTKITSQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLMRR---KLMQLQKI 146
Query: 338 NYLVIDETDRMIE 350
V+DE D M++
Sbjct: 147 KIFVLDEADNMLD 159
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S A+ LAP+RELA Q + + GK+T + +V S EK +I ++V TPG
Sbjct: 75 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD-SFEKNKQI---NAQVIVGTPG 130
Query: 1413 AL 1414
+
Sbjct: 131 TV 132
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/418 (22%), Positives = 175/418 (41%), Gaps = 90/418 (21%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
PE +++ +Y F+ P+KIQ +P L ++++ +++G+GKT AF + +LT + +
Sbjct: 14 PE-LLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE 72
Query: 835 LENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+P A+ LAP+RELA Q
Sbjct: 73 DASPQ---------------------------------------AICLAPSRELARQTLE 93
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
+ + GK+T + +V S EK +I ++V TPG + + ++ L +L KI
Sbjct: 94 VVQEMGKFTKITSQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLMRR---KLMQLQKI 146
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT--FVFSATLTHXXXXXXXXXXX 1012
V+DE D M++ + + D+ + P+ T +FSAT
Sbjct: 147 KIFVLDEADNMLDQ------QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVP 200
Query: 1013 XXXXXXXXXXDPSIKRLQDL-LNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
+ ++ ++ L ++ K + K LTE G+ S I+ +K + +
Sbjct: 201 NANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGVMTI--GSSIIFVATKKTANV 258
Query: 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129
Y L+ G + LH + ++R + +D FR+ +
Sbjct: 259 LYGKLKSEGHEVSI-----------------------LHGDLQTQERDRLIDDFREGRSK 295
Query: 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSE------IYIHRSGRTARANNEGLTLVLI 1181
+L+ T+V ARG+DIP + V++Y +P + YIHR GRT R +G+ + +
Sbjct: 296 VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 353
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 11/94 (11%)
Query: 574 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE------I 627
LH + ++R + +D FR+ + +L+ T+V ARG+DIP + V++Y +P +
Sbjct: 273 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPAT 332
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661
YIHR GRT R +G+ + + K FN+
Sbjct: 333 YIHRIGRTGRFGRKGVAISFVHD-----KNSFNI 361
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 48/193 (24%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
PE +++ +Y F+ P+KIQ +P L ++++ +++G+GKT AF + +LT + +
Sbjct: 14 PE-LLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE 72
Query: 218 LENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+P A+ LAP+RELA Q
Sbjct: 73 DASPQ---------------------------------------AICLAPSRELARQTLE 93
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
+ + GK+T + +V S EK +I ++V TPG + + ++ L +L KI
Sbjct: 94 VVQEMGKFTKITSQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLMRR---KLMQLQKI 146
Query: 338 NYLVIDETDRMIE 350
V+DE D M++
Sbjct: 147 KIFVLDEADNMLD 159
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S A+ LAP+RELA Q + + GK+T + +V S EK +I ++V TPG
Sbjct: 75 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD-SFEKNKQI---NAQVIVGTPG 130
Query: 1413 AL 1414
+
Sbjct: 131 TV 132
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%)
Query: 528 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 38 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 97
Query: 588 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT + N G+
Sbjct: 98 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTF 157
Query: 648 I 648
I
Sbjct: 158 I 158
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%)
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 38 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 97
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT + N G+
Sbjct: 98 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTF 157
Query: 1181 I 1181
I
Sbjct: 158 I 158
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 51/228 (22%)
Query: 774 NIPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
N+ E+++R +Y GF+ P+ IQ ++P + D++ A++G+GKT F I IL
Sbjct: 36 NLKESLLRGIYAYGFEKPSAIQQRAIIPC--IKGYDVIAQAQSGTGKTATFAISIL---- 89
Query: 833 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 892
+LE EF K+T+ AL+LAPTRELA Q+
Sbjct: 90 QQLE------------------------------IEF-KETQ----ALVLAPTRELAQQI 114
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPGRLWEFIQLGHFHLTEL 951
Q IL G Y +GG + +++ L + PHI+V TPGR+++ L +L+
Sbjct: 115 QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDM--LNRRYLSPK 172
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+ I V+DE D M+ G ++ I ++ + Q + SAT+
Sbjct: 173 W-IKMFVLDEADEMLSRGFKDQIYEIFQKLNTS-----IQVVLLSATM 214
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 46/210 (21%)
Query: 157 NIPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
N+ E+++R +Y GF+ P+ IQ ++P + D++ A++G+GKT F I IL
Sbjct: 36 NLKESLLRGIYAYGFEKPSAIQQRAIIPC--IKGYDVIAQAQSGTGKTATFAISIL---- 89
Query: 216 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 275
+LE EF K+T+ AL+LAPTRELA Q+
Sbjct: 90 QQLE------------------------------IEF-KETQ----ALVLAPTRELAQQI 114
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPGRLWEFIQLGHFHLTEL 334
Q IL G Y +GG + +++ L + PHI+V TPGR+++ L +L+
Sbjct: 115 QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDM--LNRRYLSPK 172
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRV 364
+ I V+DE D M+ G ++ I ++
Sbjct: 173 W-IKMFVLDEADEMLSRGFKDQIYEIFQKL 201
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPG 1412
AL+LAPTRELA Q+Q IL G Y +GG + +++ L + PHI+V TPG
Sbjct: 101 ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPG 158
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 115/255 (45%), Gaps = 52/255 (20%)
Query: 130 SANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR 189
S K L+ T +D F Q + +K +IIR G PT IQS P +L
Sbjct: 8 SGEKRLIPKPTCRFKDAFQQYPDLLK-----SIIRV----GILKPTPIQSQAWP-IILQG 57
Query: 190 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANT 249
D++ A+TG+GKTL++ +P G ++ P
Sbjct: 58 IDLIVVAQTGTGKTLSYLMP---GFIHLDSQPIS-------------------------- 88
Query: 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309
++ RN L+L PTRELA+ V+ Y +K C+ GG + Q+ ++K
Sbjct: 89 ----REQRNGPGMLVLTPTRELALHVEAE-CSKYSYKGLKSICIYGGRNRNGQIEDISKG 143
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
I++ATPGRL + L + L I YLVIDE D+M++ P+++ IL +
Sbjct: 144 VDIIIATPGRLND---LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL-----LDV 195
Query: 370 SQPRQTMIESGHFPE 384
RQT++ S +P+
Sbjct: 196 RPDRQTVMTSATWPD 210
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 113/252 (44%), Gaps = 52/252 (20%)
Query: 747 SANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR 806
S K L+ T +D F Q + +K +IIR G PT IQS P +L
Sbjct: 8 SGEKRLIPKPTCRFKDAFQQYPDLLK-----SIIRV----GILKPTPIQSQAWP-IILQG 57
Query: 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANT 866
D++ A+TG+GKTL++ +P G ++ P
Sbjct: 58 IDLIVVAQTGTGKTLSYLMP---GFIHLDSQPIS-------------------------- 88
Query: 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926
++ RN L+L PTRELA+ V+ Y +K C+ GG + Q+ ++K
Sbjct: 89 ----REQRNGPGMLVLTPTRELALHVEAE-CSKYSYKGLKSICIYGGRNRNGQIEDISKG 143
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 986
I++ATPGRL + L + L I YLVIDE D+M++ P+++ IL +
Sbjct: 144 VDIIIATPGRLND---LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL-----LDV 195
Query: 987 SQPRQTFVFSAT 998
RQT + SAT
Sbjct: 196 RPDRQTVMTSAT 207
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 1347 SRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 1406
SR R L+L PTRELA+ V+ Y +K C+ GG + Q+ ++K I
Sbjct: 88 SREQRNGPGMLVLTPTRELALHVEAE-CSKYSYKGLKSICIYGGRNRNGQIEDISKGVDI 146
Query: 1407 LVATPGALS 1415
++ATPG L+
Sbjct: 147 IIATPGRLN 155
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 46/236 (19%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
++ + F + + ++ L + ++ T+IQ + AL KD++GAA+TGSGKTLAF +
Sbjct: 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLAFLV 81
Query: 826 PILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPT 885
P+L + T + L LI++PT
Sbjct: 82 PVLEALYRLQWTST-----------------------------------DGLGVLIISPT 106
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI-QLG 944
RELA Q + GK ++GG + + +N +ILV TPGRL + + +
Sbjct: 107 RELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRLLQHMDETV 165
Query: 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000
FH T+L LV+DE DR+++ G + +++ + + RQT +FSAT T
Sbjct: 166 SFHATDL---QMLVLDEADRILDMGFADTMNAVIENL-----PKKRQTLLFSATQT 213
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 46/233 (19%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
++ + F + + ++ L + ++ T+IQ + AL KD++GAA+TGSGKTLAF +
Sbjct: 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLAFLV 81
Query: 209 PILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPT 268
P+L + T + L LI++PT
Sbjct: 82 PVLEALYRLQWTST-----------------------------------DGLGVLIISPT 106
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI-QLG 327
RELA Q + GK ++GG + + +N +ILV TPGRL + + +
Sbjct: 107 RELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRLLQHMDETV 165
Query: 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
FH T+L LV+DE DR+++ G + +++ + + RQT++ S
Sbjct: 166 SFHATDL---QMLVLDEADRILDMGFADTMNAVIENL-----PKKRQTLLFSA 210
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 1351 RYSWDA------LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 1404
R W + LI++PTRELA Q + GK ++GG + + +N
Sbjct: 89 RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI- 147
Query: 1405 HILVATPGALSLKRID 1420
+ILV TPG L L+ +D
Sbjct: 148 NILVCTPGRL-LQHMD 162
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 87/403 (21%), Positives = 173/403 (42%), Gaps = 93/403 (23%)
Query: 793 KIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXXX 850
KIQ +P LL+ ++++G +++G+GKT AF + +L+ + + P
Sbjct: 144 KIQEKALP-LLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQ----------- 191
Query: 851 XXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV 910
A+ LAP+RELA Q+ + + + GKYT VK A
Sbjct: 192 ----------------------------AICLAPSRELARQIMDVVTEMGKYTEVKTAFG 223
Query: 911 VGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGH 970
+ S K +I I++ TPG + + ++ + I V+DE D M++
Sbjct: 224 IKD-SVPKGAKI---DAQIVIGTPGTVMDLMKRRQLDARD---IKVFVLDEADNMLDQQG 276
Query: 971 FPE----LKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSI 1026
+ +K++L R T Q +FSAT + +
Sbjct: 277 LGDQSMRIKHLLPRNT--------QIVLFSATFSE-----------------------RV 305
Query: 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK--DSYLYYFILQHPGRTLVFC 1084
++ + + +I TE++ + + + + + C+ +E + + + L G++++FC
Sbjct: 306 EKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFC 364
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
+ + + + +T + L ++ QR +D FR + +L+ T+V ARG+D+
Sbjct: 365 KKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVS 424
Query: 1145 GIEHVIHYHVPRTS------EIYIHRSGRTARANNEGLTLVLI 1181
+ V++Y +P + Y+HR GRT R G+++ +
Sbjct: 425 QVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 467
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
G++++FC + + + + +T + L ++ QR +D FR + +L+ T+V
Sbjct: 358 GQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVI 417
Query: 605 ARGLDIPGIEHVIHYHVPRTS------EIYIHRSGRTARANNEGLTVVLI 648
ARG+D+ + V++Y +P + Y+HR GRT R G+++ +
Sbjct: 418 ARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 467
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 49/177 (27%)
Query: 176 KIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXXX 233
KIQ +P LL+ ++++G +++G+GKT AF + +L+ + + P
Sbjct: 144 KIQEKALP-LLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQ----------- 191
Query: 234 XXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV 293
A+ LAP+RELA Q+ + + + GKYT VK A
Sbjct: 192 ----------------------------AICLAPSRELARQIMDVVTEMGKYTEVKTAFG 223
Query: 294 VGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 350
+ S K +I I++ TPG + + ++ + I V+DE D M++
Sbjct: 224 IKD-SVPKGAKI---DAQIVIGTPGTVMDLMKRRQLDARD---IKVFVLDEADNMLD 273
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A+ LAP+RELA Q+ + + + GKYT VK A + S K +I I++ TPG +
Sbjct: 192 AICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKD-SVPKGAKI---DAQIVIGTPGTV- 246
Query: 1416 LKRIDLAKSIEYLESKIKK---NRPDNWLEK 1443
+DL K + IK + DN L++
Sbjct: 247 ---MDLMKRRQLDARDIKVFVLDEADNMLDQ 274
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 1/137 (0%)
Query: 517 TKTLTESKILCKHDEKDSYLYYFIL-QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
T+ + + I + + K S L ++ ++P ++FC + V +LT L L +H
Sbjct: 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIH 66
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
M Q R ++ F+ L+ATDVAARG+DI I VI+Y +P E Y+HR+GRT
Sbjct: 67 GGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRT 126
Query: 636 ARANNEGLTVVLIESDE 652
RA N+G + + + E
Sbjct: 127 GRAGNKGKAISFVTAFE 143
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 1/137 (0%)
Query: 1050 TKTLTESKILCKHDEKDSYLYYFIL-QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
T+ + + I + + K S L ++ ++P ++FC + V +LT L L +H
Sbjct: 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIH 66
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
M Q R ++ F+ L+ATDVAARG+DI I VI+Y +P E Y+HR+GRT
Sbjct: 67 GGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRT 126
Query: 1169 ARANNEGLTLVLIESDE 1185
RA N+G + + + E
Sbjct: 127 GRAGNKGKAISFVTAFE 143
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 107/228 (46%), Gaps = 47/228 (20%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ E ++A+ + GF T+IQ + LL +D++ AA+TGSGKTLAF IP + IV
Sbjct: 61 VNENTLKAIKEMGFTNMTEIQHKSI-RPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL 119
Query: 835 LENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
P RN LIL+PTRELA+Q
Sbjct: 120 RFMP-----------------------------------RNGTGVLILSPTRELAMQTFG 144
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYK 953
+ + + ++GG + + + L +I+VATPGRL + +Q F +YK
Sbjct: 145 VLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGF----MYK 200
Query: 954 -INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000
+ LVIDE DR+++ G ELK I+ + RQT +FSAT T
Sbjct: 201 NLQCLVIDEADRILDVGFEEELKQIIKLL-----PTRRQTMLFSATQT 243
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 47/224 (20%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ E ++A+ + GF T+IQ + LL +D++ AA+TGSGKTLAF IP + IV
Sbjct: 61 VNENTLKAIKEMGFTNMTEIQHKSI-RPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL 119
Query: 218 LENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
P RN LIL+PTRELA+Q
Sbjct: 120 RFMP-----------------------------------RNGTGVLILSPTRELAMQTFG 144
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYK 336
+ + + ++GG + + + L +I+VATPGRL + +Q F +YK
Sbjct: 145 VLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGF----MYK 200
Query: 337 -INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
+ LVIDE DR+++ G ELK I+ + RQTM+ S
Sbjct: 201 NLQCLVIDEADRILDVGFEEELKQIIKLL-----PTRRQTMLFS 239
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
R LIL+PTRELA+Q + + + ++GG + + + L +I+VAT
Sbjct: 124 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVAT 183
Query: 1411 PGAL 1414
PG L
Sbjct: 184 PGRL 187
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 82.0 bits (201), Expect = 2e-15, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 51/228 (22%)
Query: 774 NIPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
N+ E+++R +Y GF+ P+ IQ ++P + D++ A++G+G T F I IL I
Sbjct: 21 NLSESLLRGIYAYGFEXPSAIQQRAILPC--IXGYDVIAQAQSGTGXTATFAISILQQIE 78
Query: 833 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 892
L AL+LAPTRELA Q+
Sbjct: 79 LDLXATQ---------------------------------------ALVLAPTRELAQQI 99
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPGRLWEFIQLGHFHLTEL 951
Q ++ G Y +GG + +++ L + PHI+V TPGR+ F L +L+
Sbjct: 100 QXVVMALGDYMGASCHACIGGTNVRAEVQXLQMEAPHIIVGTPGRV--FDMLNRRYLSPX 157
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
Y I V+DE D M+ G ++ +I + Q + SAT+
Sbjct: 158 Y-IXMFVLDEADEMLSRGFXDQIYDIFQXLNSNT-----QVVLLSATM 199
Score = 81.3 bits (199), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 46/207 (22%)
Query: 157 NIPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
N+ E+++R +Y GF+ P+ IQ ++P + D++ A++G+G T F I IL I
Sbjct: 21 NLSESLLRGIYAYGFEXPSAIQQRAILPC--IXGYDVIAQAQSGTGXTATFAISILQQIE 78
Query: 216 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 275
L AL+LAPTRELA Q+
Sbjct: 79 LDLXATQ---------------------------------------ALVLAPTRELAQQI 99
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPGRLWEFIQLGHFHLTEL 334
Q ++ G Y +GG + +++ L + PHI+V TPGR+ F L +L+
Sbjct: 100 QXVVMALGDYMGASCHACIGGTNVRAEVQXLQMEAPHIIVGTPGRV--FDMLNRRYLSPX 157
Query: 335 YKINYLVIDETDRMIESGHFPELKNIL 361
Y I V+DE D M+ G ++ +I
Sbjct: 158 Y-IXMFVLDEADEMLSRGFXDQIYDIF 183
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPG 1412
AL+LAPTRELA Q+Q ++ G Y +GG + +++ L + PHI+V TPG
Sbjct: 86 ALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQXLQMEAPHIIVGTPG 143
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 81.3 bits (199), Expect = 4e-15, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 49/230 (21%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L
Sbjct: 19 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATL---- 73
Query: 833 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 892
+LE T ++ L++ TRELA Q+
Sbjct: 74 QQLEPVT-----------------------------------GQVSVLVMCHTRELAFQI 98
Query: 893 QNHILDAGKYTP-VKVACVVGGMSTEKQLRILNK-CPHILVATPGRLWEFIQLGHFHLTE 950
KY P VKVA GG+S +K +L K CPHI+V TPGR+ + L
Sbjct: 99 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI---LALARNKSLN 155
Query: 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000
L I + ++DE D+M+E +++ + M T +Q +FSATL+
Sbjct: 156 LKHIKHFILDECDKMLE--QLDMRRDVQEIFRM--TPHEKQVMMFSATLS 201
Score = 76.6 bits (187), Expect = 1e-13, Method: Composition-based stats.
Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 45/197 (22%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L
Sbjct: 19 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATL---- 73
Query: 216 NKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQV 275
+LE T ++ L++ TRELA Q+
Sbjct: 74 QQLEPVT-----------------------------------GQVSVLVMCHTRELAFQI 98
Query: 276 QNHILDAGKYTP-VKVACVVGGMSTEKQLRILNK-CPHILVATPGRLWEFIQLGHFHLTE 333
KY P VKVA GG+S +K +L K CPHI+V TPGR+ + L
Sbjct: 99 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI---LALARNKSLN 155
Query: 334 LYKINYLVIDETDRMIE 350
L I + ++DE D+M+E
Sbjct: 156 LKHIKHFILDECDKMLE 172
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNK-CPHILVATPG-A 1413
L++ TRELA Q+ KY P VKVA GG+S +K +L K CPHI+V TPG
Sbjct: 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 145
Query: 1414 LSLKR 1418
L+L R
Sbjct: 146 LALAR 150
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To
Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 80.5 bits (197), Expect = 6e-15, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 1064 EKDSYLYYFILQHP--GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
E + L +L+ P R++VF V L L + L M Q +R + +
Sbjct: 15 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 74
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
R + ++L+ATDVAARG+DIP + HV ++ +PR+ + Y+HR GRTARA +G + L+
Sbjct: 75 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134
Query: 1182 ESDEIPLYIKMFNSLEKKV 1200
E+ + L K+ +E+ +
Sbjct: 135 EAHDHLLLGKVGRYIEEPI 153
Score = 80.5 bits (197), Expect = 7e-15, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 531 EKDSYLYYFILQHP--GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
E + L +L+ P R++VF V L L + L M Q +R + +
Sbjct: 15 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 74
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
R + ++L+ATDVAARG+DIP + HV ++ +PR+ + Y+HR GRTARA +G + L+
Sbjct: 75 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134
Query: 649 ESDE 652
E+ +
Sbjct: 135 EAHD 138
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1279
D +LHR GRTARA +G + L+E+ + L K+ +E+ +
Sbjct: 112 DTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 153
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 1050 TKTLTESKILCKHDEKDSYLYYFILQHPGR---TLVFCNSISSVKRLTQLLTMLKCSPLP 1106
++ +T+ + + +K S+L +L G+ TLVF + L L +
Sbjct: 17 SENITQKVVWVEESDKRSFLLD-LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTS 75
Query: 1107 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166
+H +QR R + L +FR + IL+AT VAARGLDI ++HVI++ +P E Y+HR G
Sbjct: 76 IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 135
Query: 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDF 1205
RT R N GL I + + + L E K ++P +
Sbjct: 136 RTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSW 175
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 517 TKTLTESKILCKHDEKDSYLYYFILQHPGR---TLVFCNSISSVKRLTQLLTMLKCSPLP 573
++ +T+ + + +K S+L +L G+ TLVF + L L +
Sbjct: 17 SENITQKVVWVEESDKRSFLLD-LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTS 75
Query: 574 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 633
+H +QR R + L +FR + IL+AT VAARGLDI ++HVI++ +P E Y+HR G
Sbjct: 76 IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 135
Query: 634 RTARANNEGLT 644
RT R N GL
Sbjct: 136 RTGRVGNLGLA 146
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
L H + Q +R + RF+ + IL+ TDV ARG+D P + V+ VP YIHR
Sbjct: 64 LEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 123
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTAR+ EG +V+ I DE+P
Sbjct: 124 IGRTARSGKEGSSVLFICKDELPF 147
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%)
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
L H + Q +R + RF+ + IL+ TDV ARG+D P + V+ VP YIHR
Sbjct: 64 LEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 123
Query: 1165 SGRTARANNEGLTLVLIESDEIPL 1188
GRTAR+ EG +++ I DE+P
Sbjct: 124 IGRTARSGKEGSSVLFICKDELPF 147
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPL 1267
N++HR GRTAR+ EG +++ I DE+P
Sbjct: 119 NYIHRIGRTARSGKEGSSVLFICKDELPF 147
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
L H + Q +R + RF+ + IL+ TDV ARG+D P + V+ VP YIHR
Sbjct: 64 LEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 123
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTAR+ EG +V+ I DE+P
Sbjct: 124 IGRTARSGKEGSSVLFICKDELPF 147
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%)
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
L H + Q +R + RF+ + IL+ TDV ARG+D P + V+ VP YIHR
Sbjct: 64 LEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 123
Query: 1165 SGRTARANNEGLTLVLIESDEIPL 1188
GRTAR+ EG +++ I DE+P
Sbjct: 124 IGRTARSGKEGSSVLFICKDELPF 147
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPL 1267
N++HR GRTAR+ EG +++ I DE+P
Sbjct: 119 NYIHRIGRTARSGKEGSSVLFICKDELPF 147
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
L H + Q +R + RF+ + IL+ TDV ARG+D P + V+ VP YIHR
Sbjct: 64 LEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 123
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRTAR+ EG +V+ I DE+P
Sbjct: 124 IGRTARSGKEGSSVLFICKDELPF 147
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%)
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
L H + Q +R + RF+ + IL+ TDV ARG+D P + V+ VP YIHR
Sbjct: 64 LEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 123
Query: 1165 SGRTARANNEGLTLVLIESDEIPL 1188
GRTAR+ EG +++ I DE+P
Sbjct: 124 IGRTARSGKEGSSVLFICKDELPF 147
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPL 1267
N++HR GRTAR+ EG +++ I DE+P
Sbjct: 119 NYIHRIGRTARSGKEGSSVLFICKDELPF 147
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 46/203 (22%)
Query: 160 ETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
E ++R ++ GF+ P+ IQ +MP ++ D++ A++G+GKT F I L I +
Sbjct: 23 ENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV 80
Query: 219 ENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNH 278
+ P AL+LAPTRELA+Q+Q
Sbjct: 81 KAPQ---------------------------------------ALMLAPTRELALQIQKV 101
Query: 279 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
++ + +KV +GG S + L I+V TPGR+++ IQ F KI
Sbjct: 102 VMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTD---KIK 157
Query: 339 YLVIDETDRMIESGHFPELKNIL 361
++DE D M+ SG ++ I
Sbjct: 158 MFILDEADEMLSSGFKEQIYQIF 180
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 46/203 (22%)
Query: 777 ETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
E ++R ++ GF+ P+ IQ +MP ++ D++ A++G+GKT F I L I +
Sbjct: 23 ENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV 80
Query: 836 ENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNH 895
+ P AL+LAPTRELA+Q+Q
Sbjct: 81 KAPQ---------------------------------------ALMLAPTRELALQIQKV 101
Query: 896 ILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
++ + +KV +GG S + L I+V TPGR+++ IQ F KI
Sbjct: 102 VMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTD---KIK 157
Query: 956 YLVIDETDRMIESGHFPELKNIL 978
++DE D M+ SG ++ I
Sbjct: 158 MFILDEADEMLSSGFKEQIYQIF 180
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L I+V TPG
Sbjct: 85 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPG 140
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna
Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna
Helicase
Length = 175
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 17/162 (10%)
Query: 1058 ILCKHDEKDSY-----LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
+LC+H KD Y +Y I G+ ++FC + + K LT + L +
Sbjct: 13 VLCEH-RKDKYQALCNIYGSIT--IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELT 69
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS------EIYIHRSG 1166
QR + RFRD +L+ T+V ARG+D+ + V+++ +P E Y+HR G
Sbjct: 70 VEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIG 129
Query: 1167 RTARANNEGLTLVLIESDEIPLYIKM---FNSLEKKVDLPDF 1205
RT R +GL +IE DE+P +K+ FNS K+++ D
Sbjct: 130 RTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAEDM 171
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 525 ILCKHDEKDSY-----LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 579
+LC+H KD Y +Y I G+ ++FC + + K LT + L +
Sbjct: 13 VLCEH-RKDKYQALCNIYGSIT--IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELT 69
Query: 580 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS------EIYIHRSG 633
QR + RFRD +L+ T+V ARG+D+ + V+++ +P E Y+HR G
Sbjct: 70 VEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIG 129
Query: 634 RTARANNEGLTVVLIESDEIP 654
RT R +GL +IE DE+P
Sbjct: 130 RTGRFGKKGLAFNMIEVDELP 150
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 1237 PD--NWLHRSGRTARANNEGLTLVLIESDEIPLYIKM---FNSLEKKVDLPDF 1284
PD +LHR GRT R +GL +IE DE+P +K+ FNS K+++ D
Sbjct: 119 PDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAEDM 171
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
++++FCNS V+ L + ++ L S +HA M Q R + FR+ L+ TD+
Sbjct: 46 QSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFT 105
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662
RG+DI + VI++ P+ +E Y+HR GR+ R + GL + LI D+ +FNL+
Sbjct: 106 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDD-----RFNLK 157
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
++++FCNS V+ L + ++ L S +HA M Q R + FR+ L+ TD+
Sbjct: 46 QSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFT 105
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
RG+DI + VI++ P+ +E Y+HR GR+ R + GL + LI D+
Sbjct: 106 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDD 152
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 108/232 (46%), Gaps = 49/232 (21%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
E+ + + ++ +++ G++ P+ IQ +P AL R DI+ A+ G+GK+ A+ IP+L
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGR-DILARAKNGTGKSGAYLIPLL 62
Query: 829 TGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTREL 888
E + ++ + A+++ PTREL
Sbjct: 63 ---------------------------------------ERLDLKKDNIQAMVIVPTREL 83
Query: 889 AIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
A+QV + K+ KV GG + + L+ H+++ATPGR+ + I+ G
Sbjct: 84 ALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG--- 140
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+ ++ + +V+DE D+++ + I++ + +T + RQ ++SAT
Sbjct: 141 VAKVDHVQMIVLDEADKLLSQ----DFVQIMEDIILT-LPKNRQILLYSATF 187
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 108/233 (46%), Gaps = 49/233 (21%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
E+ + + ++ +++ G++ P+ IQ +P AL R DI+ A+ G+GK+ A+ IP+L
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGR-DILARAKNGTGKSGAYLIPLL 62
Query: 212 TGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTREL 271
E + ++ + A+++ PTREL
Sbjct: 63 ---------------------------------------ERLDLKKDNIQAMVIVPTREL 83
Query: 272 AIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
A+QV + K+ KV GG + + L+ H+++ATPGR+ + I+ G
Sbjct: 84 ALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG--- 140
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
+ ++ + +V+DE D+++ + I++ + +T + RQ ++ S FP
Sbjct: 141 VAKVDHVQMIVLDEADKLLSQ----DFVQIMEDIILT-LPKNRQILLYSATFP 188
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
A+++ PTRELA+QV + K+ KV GG + + L+ H+++ATPG
Sbjct: 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPG 131
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 73.6 bits (179), Expect = 8e-13, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 99/226 (43%), Gaps = 51/226 (22%)
Query: 775 IPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+ E ++R ++ GF+ P+ IQ +MP ++ D++ A++G+GKT F I L I
Sbjct: 28 LDEQLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTFSIAALQRIDT 85
Query: 834 KLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
++ P AL+LAPTRELA+Q+Q
Sbjct: 86 SVKAPQ---------------------------------------ALMLAPTRELALQIQ 106
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
++ + +KV +GG S + L I+V TPGR+++ IQ F K
Sbjct: 107 KVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTD---K 162
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
I ++DE D M+ SG ++ I + T Q + SAT+
Sbjct: 163 IKMFILDEADEMLSSGFKEQIYQIFTLLPPTT-----QVVLLSATM 203
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 46/205 (22%)
Query: 158 IPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+ E ++R ++ GF+ P+ IQ +MP ++ D++ A++G+GKT F I L I
Sbjct: 28 LDEQLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTFSIAALQRIDT 85
Query: 217 KLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
++ P AL+LAPTRELA+Q+Q
Sbjct: 86 SVKAPQ---------------------------------------ALMLAPTRELALQIQ 106
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
++ + +KV +GG S + L I+V TPGR+++ IQ F K
Sbjct: 107 KVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTD---K 162
Query: 337 INYLVIDETDRMIESGHFPELKNIL 361
I ++DE D M+ SG ++ I
Sbjct: 163 IKMFILDEADEMLSSGFKEQIYQIF 187
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L I+V TPG
Sbjct: 92 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPG 147
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 118/258 (45%), Gaps = 49/258 (18%)
Query: 749 NKELLEVDTSNNED---MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
NK + V ++ D F Q+ + K N +++ + GF+ PT IQ +P L
Sbjct: 9 NKHKIHVQGTDLPDPIATFQQLDQEYKIN--SRLLQNILDAGFQMPTPIQMQAIPVMLHG 66
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSAN 865
R +++ +A TGSGKTLAF IPIL +L+ P
Sbjct: 67 R-ELLASAPTGSGKTLAFSIPILM----QLKQPA-------------------------- 95
Query: 866 TTEFVKKTRNKLY-ALILAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRIL 923
NK + ALI++PTRELA Q+ ++ + T ++ + ++ +K
Sbjct: 96 ---------NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKS 146
Query: 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
+K ILV TP RL ++ + +L + +LV+DE+D++ E G ++ L + +
Sbjct: 147 SKKFDILVTTPNRLIYLLKQDPPGI-DLASVEWLVVDESDKLFEDGK-TGFRDQLASIFL 204
Query: 984 TETSQPRQTFVFSATLTH 1001
TS + +FSAT +
Sbjct: 205 ACTSHKVRRAMFSATFAY 222
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 48/226 (21%)
Query: 132 NKELLEVDTSNNED---MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
NK + V ++ D F Q+ + K N +++ + GF+ PT IQ +P L
Sbjct: 9 NKHKIHVQGTDLPDPIATFQQLDQEYKIN--SRLLQNILDAGFQMPTPIQMQAIPVMLHG 66
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSAN 248
R +++ +A TGSGKTLAF IPIL +L+ P
Sbjct: 67 R-ELLASAPTGSGKTLAFSIPILM----QLKQPA-------------------------- 95
Query: 249 TTEFVKKTRNKLY-ALILAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRIL 306
NK + ALI++PTRELA Q+ ++ + T ++ + ++ +K
Sbjct: 96 ---------NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKS 146
Query: 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESG 352
+K ILV TP RL ++ + +L + +LV+DE+D++ E G
Sbjct: 147 SKKFDILVTTPNRLIYLLKQDPPGI-DLASVEWLVVDESDKLFEDG 191
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 20/89 (22%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKV-----ACVVG---GMSTEKQLRILNKCP 1404
+ ALI++PTRELA Q+ ++ + T ++ A V G + K+ IL P
Sbjct: 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTP 157
Query: 1405 HILVAT-----PGALSLKRIDLAKSIEYL 1428
+ L+ PG IDLA S+E+L
Sbjct: 158 NRLIYLLKQDPPG------IDLA-SVEWL 179
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 1053 LTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
L + + K +EK+ L+ + + + ++F S+ L QLL + +H M
Sbjct: 6 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 65
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
Q +RL +F+D IL+AT++ RG+DI + +Y +P S+ Y+HR R R
Sbjct: 66 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 125
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKK--VDLPDFPIDESVLSLIKK 1217
+GL + + SDE K+ N ++ + V++ + P + + S I++
Sbjct: 126 GTKGLAITFV-SDEND--AKILNDVQDRFEVNISELPDEIDISSYIEQ 170
Score = 68.2 bits (165), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 520 LTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 578
L + + K +EK+ L+ + + + ++F S+ L QLL + +H M
Sbjct: 6 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 65
Query: 579 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638
Q +RL +F+D IL+AT++ RG+DI + +Y +P S+ Y+HR R R
Sbjct: 66 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 125
Query: 639 NNEGLTVVLIESDE 652
+GL + + SDE
Sbjct: 126 GTKGLAITFV-SDE 138
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
P R +VF + + + + Q L L LH M+Q +R + + FR +L+ATDV
Sbjct: 28 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV 87
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIH 630
AARGLDIP ++ V+HY +P +E Y H
Sbjct: 88 AARGLDIPQVDLVVHYRMPDRAEAYQH 114
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P R +VF + + + + Q L L LH M+Q +R + + FR +L+ATDV
Sbjct: 28 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV 87
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIH 1163
AARGLDIP ++ V+HY +P +E Y H
Sbjct: 88 AARGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 68.2 bits (165), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
P R +VF + + + + Q L L LH ++Q +R + L FR +L+ATDV
Sbjct: 31 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV 90
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIH 630
AARGLDIP ++ V+HY +P +E Y H
Sbjct: 91 AARGLDIPQVDLVVHYRLPDRAEAYQH 117
Score = 68.2 bits (165), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P R +VF + + + + Q L L LH ++Q +R + L FR +L+ATDV
Sbjct: 31 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV 90
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIH 1163
AARGLDIP ++ V+HY +P +E Y H
Sbjct: 91 AARGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 54/256 (21%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK--DIVGAAE 197
T + + + A++ + ++ L GF+ P+ +Q +P L R D++ A+
Sbjct: 13 TRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIP---LGRCGLDLIVQAK 69
Query: 198 TGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTR 257
+G+GKT F L +V LEN +
Sbjct: 70 SGTGKTCVFSTIALDSLV--LENLSTQI-------------------------------- 95
Query: 258 NKLYALILAPTRELAIQVQNHILDAG-KYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
LILAPTRE+A+Q+ + I G K ++ +GG + L KC HI V +
Sbjct: 96 -----LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKC-HIAVGS 149
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+ + I+L + + I ++DE D+++E G F E N + + +Q +
Sbjct: 150 PGRIKQLIELDYLNPG---SIRLFILDEADKLLEEGSFQEQINWI----YSSLPASKQML 202
Query: 377 IESGHFPE-LKNILDR 391
S +PE L N L +
Sbjct: 203 AVSATYPEFLANALTK 218
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 49/223 (21%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK--DIVGAAE 814
T + + + A++ + ++ L GF+ P+ +Q +P L R D++ A+
Sbjct: 13 TRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIP---LGRCGLDLIVQAK 69
Query: 815 TGSGKTLAFGIPILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTR 874
+G+GKT F L +V LEN +
Sbjct: 70 SGTGKTCVFSTIALDSLV--LENLSTQI-------------------------------- 95
Query: 875 NKLYALILAPTRELAIQVQNHILDAG-KYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
LILAPTRE+A+Q+ + I G K ++ +GG + L KC HI V +
Sbjct: 96 -----LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKC-HIAVGS 149
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 976
PGR+ + I+L + + I ++DE D+++E G F E N
Sbjct: 150 PGRIKQLIELDYLNPG---SIRLFILDEADKLLEEGSFQEQIN 189
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 1357 LILAPTRELAIQVQNHILDAG-KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
LILAPTRE+A+Q+ + I G K ++ +GG + L KC HI V +PG
Sbjct: 96 LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKC-HIAVGSPG 151
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 527 CKH--DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
CK+ D+ D + L G +++F + + L L LH + ++R
Sbjct: 16 CKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 75
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE------IYIHRSGRTARA 638
+ +D FR+ + +L+ T+V ARG+DIP + V++Y +P + YIHR GRT R
Sbjct: 76 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 135
Query: 639 NNEGLTVVLIESDEIPLKTKFNL 661
+G+ + + K FN+
Sbjct: 136 GRKGVAISFVHD-----KNSFNI 153
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 1060 CKH--DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 1117
CK+ D+ D + L G +++F + + L L LH + ++R
Sbjct: 16 CKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 75
Query: 1118 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE------IYIHRSGRTARA 1171
+ +D FR+ + +L+ T+V ARG+DIP + V++Y +P + YIHR GRT R
Sbjct: 76 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 135
Query: 1172 NNEGLTLVLI 1181
+G+ + +
Sbjct: 136 GRKGVAISFV 145
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 527 CKH--DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
CK+ D+ D + L G +++F + + L L LH + ++R
Sbjct: 18 CKNEADKFDVLTELYGLXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 77
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE------IYIHRSGRTARA 638
+ +D FR+ + +L+ T+V ARG+DIP + V++Y +P + YIHR GRT R
Sbjct: 78 RLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRF 137
Query: 639 NNEGLTVVLIESDEIPLKTKFNL 661
+G+ + + K FN+
Sbjct: 138 GRKGVAISFVHD-----KNSFNI 155
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 1060 CKH--DEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 1117
CK+ D+ D + L G +++F + + L L LH + ++R
Sbjct: 18 CKNEADKFDVLTELYGLXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 77
Query: 1118 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE------IYIHRSGRTARA 1171
+ +D FR+ + +L+ T+V ARG+DIP + V++Y +P + YIHR GRT R
Sbjct: 78 RLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRF 137
Query: 1172 NNEGLTLVLI 1181
+G+ + +
Sbjct: 138 GRKGVAISFV 147
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 11/94 (11%)
Query: 574 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE------I 627
LH + ++R + +D FR+ + +L+ T+V ARG+DIP + V++Y +P +
Sbjct: 66 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPAT 125
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661
YIHR GRT R +G+ + + K FN+
Sbjct: 126 YIHRIGRTGRFGRKGVAISFVHD-----KNSFNI 154
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 1107 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE------I 1160
LH + ++R + +D FR+ + +L+ T+V ARG+DIP + V++Y +P +
Sbjct: 66 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPAT 125
Query: 1161 YIHRSGRTARANNEGLTLVLI 1181
YIHR GRT R +G+ + +
Sbjct: 126 YIHRIGRTGRFGRKGVAISFV 146
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 58/227 (25%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+++ +Y GF P+KIQ +P +LA ++++ +++G+GKT AF + +L+ + +
Sbjct: 103 LLQGVYAMGFNRPSKIQENALP-LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 161
Query: 837 NPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
P L L+PT ELA+Q I
Sbjct: 162 YPQ---------------------------------------CLCLSPTYELALQTGKVI 182
Query: 897 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 955
GK+ P +K+A V G E+ +I I++ TPG + ++ + KI
Sbjct: 183 EQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWC--SKLKFIDPKKIK 237
Query: 956 YLVIDETDRMIES-GHFPELKNILDRVTMTETSQPR--QTFVFSATL 999
V+DE D MI + GH D+ + PR Q +FSAT
Sbjct: 238 VFVLDEADVMIATQGH-------QDQSIRIQRMLPRNCQMLLFSATF 277
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 49/196 (25%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+++ +Y GF P+KIQ +P +LA ++++ +++G+GKT AF + +L+ + +
Sbjct: 103 LLQGVYAMGFNRPSKIQENALP-LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 161
Query: 220 NPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279
P L L+PT ELA+Q I
Sbjct: 162 YPQ---------------------------------------CLCLSPTYELALQTGKVI 182
Query: 280 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKIN 338
GK+ P +K+A V G E+ +I I++ TPG + ++ + KI
Sbjct: 183 EQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWC--SKLKFIDPKKIK 237
Query: 339 YLVIDETDRMIES-GH 353
V+DE D MI + GH
Sbjct: 238 VFVLDEADVMIATQGH 253
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L L+PT ELA+Q I GK+ P +K+A V G E+ +I I++ TPG +
Sbjct: 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTV 221
Query: 1415 SLKRIDLAKSIEYLESK 1431
+D +++++ K
Sbjct: 222 ----LDWCSKLKFIDPK 234
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 94/226 (41%), Gaps = 56/226 (24%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 837
+++ +Y GF P+KIQ +P L ++++ +++G+GKT AF + +L+ + +
Sbjct: 36 LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY 95
Query: 838 PTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 897
P L L+PT ELA+Q I
Sbjct: 96 PQ---------------------------------------CLCLSPTYELALQTGKVIE 116
Query: 898 DAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 956
GK+ P +K+A V G E+ +I I++ TPG + ++ + KI
Sbjct: 117 QMGKFYPELKLAYAVRGNKLERGQKISE---QIVIGTPGTVLDWC--SKLKFIDPKKIKV 171
Query: 957 LVIDETDRMIES-GHFPELKNILDRVTMTETSQPR--QTFVFSATL 999
V+DE D MI + GH D+ + PR Q +FSAT
Sbjct: 172 FVLDEADVMIATQGH-------QDQSIRIQRMLPRNCQMLLFSATF 210
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 47/195 (24%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 220
+++ +Y GF P+KIQ +P L ++++ +++G+GKT AF + +L+ + +
Sbjct: 36 LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY 95
Query: 221 PTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQNHIL 280
P L L+PT ELA+Q I
Sbjct: 96 PQ---------------------------------------CLCLSPTYELALQTGKVIE 116
Query: 281 DAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339
GK+ P +K+A V G E+ +I I++ TPG + ++ + KI
Sbjct: 117 QMGKFYPELKLAYAVRGNKLERGQKISE---QIVIGTPGTVLDWC--SKLKFIDPKKIKV 171
Query: 340 LVIDETDRMIES-GH 353
V+DE D MI + GH
Sbjct: 172 FVLDEADVMIATQGH 186
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L L+PT ELA+Q I GK+ P +K+A V G E+ +I I++ TPG +
Sbjct: 98 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE---QIVIGTPGTV 154
Query: 1415 SLKRIDLAKSIEYLESK 1431
+D +++++ K
Sbjct: 155 ----LDWCSKLKFIDPK 167
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ ++FCN+ V+ LT L K + +++ + Q++R + FR ++ IL++TD+ A
Sbjct: 32 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 91
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIH 630
RG+D+ + VI+Y +P E YIH
Sbjct: 92 RGIDVQQVSLVINYDLPANKENYIH 116
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+ ++FCN+ V+ LT L K + +++ + Q++R + FR ++ IL++TD+ A
Sbjct: 32 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 91
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIH 1163
RG+D+ + VI+Y +P E YIH
Sbjct: 92 RGIDVQQVSLVINYDLPANKENYIH 116
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 56/228 (24%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
PE +++ +Y F+ P+KIQ +P L ++++ +++G+GKT AF + +LT + +
Sbjct: 31 PE-LLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE 89
Query: 835 LENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+P A+ LAP+RELA Q
Sbjct: 90 DASPQ---------------------------------------AICLAPSRELARQTLE 110
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
+ + GK+T + +V S EK +I ++V TPG + + ++ L +L KI
Sbjct: 111 VVQEMGKFTKITSQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLMRR---KLMQLQKI 163
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR--QTFVFSATLT 1000
V+DE D M++ + + D+ + P+ Q +FSAT
Sbjct: 164 KIFVLDEADNMLDQ------QGLGDQCIRVKRFLPKDTQLVLFSATFA 205
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 48/193 (24%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
PE +++ +Y F+ P+KIQ +P L ++++ +++G+GKT AF + +LT + +
Sbjct: 31 PE-LLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE 89
Query: 218 LENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+P A+ LAP+RELA Q
Sbjct: 90 DASPQ---------------------------------------AICLAPSRELARQTLE 110
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
+ + GK+T + +V S EK +I ++V TPG + + ++ L +L KI
Sbjct: 111 VVQEMGKFTKITSQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLMRR---KLMQLQKI 163
Query: 338 NYLVIDETDRMIE 350
V+DE D M++
Sbjct: 164 KIFVLDEADNMLD 176
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S A+ LAP+RELA Q + + GK+T + +V S EK +I ++V TPG
Sbjct: 92 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD-SFEKNKQI---NAQVIVGTPG 147
Query: 1413 AL 1414
+
Sbjct: 148 TV 149
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%)
Query: 533 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592
D + Y Q +++CNS + V+ L S HA + R ++F+
Sbjct: 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR 284
Query: 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+ I++AT G++ P + V+H+ +PR E Y +GR R
Sbjct: 285 DDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%)
Query: 1066 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
D + Y Q +++CNS + V+ L S HA + R ++F+
Sbjct: 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR 284
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
+ I++AT G++ P + V+H+ +PR E Y +GR R
Sbjct: 285 DDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 536 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 594
L ++ + G++ +++CNS + V+ L S HA + R ++F+ +
Sbjct: 227 LXRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD 286
Query: 595 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
I++AT G++ P + V+H+ +PR E Y +GR R
Sbjct: 287 LQIVVATVAFGXGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 1069 LYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L ++ + G++ +++CNS + V+ L S HA + R ++F+ +
Sbjct: 227 LXRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD 286
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
I++AT G++ P + V+H+ +PR E Y +GR R
Sbjct: 287 LQIVVATVAFGXGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 546 RTLVFCNSISSVKRLTQLLTM--LKCSPLPLHAS------MNQRQRLKNLDRFRDQNNSI 597
+ +VF N + K++ L +K AS ++QR++ LD F ++
Sbjct: 363 KIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 422
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
L+AT V GLD+P ++ V+ Y ++ I R GRT R + G ++L+
Sbjct: 423 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR-HMPGRVIILM 472
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 1079 RTLVFCNSISSVKRLTQLLTM--LKCSPLPLHAS------MNQRQRLKNLDRFRDQNNSI 1130
+ +VF N + K++ L +K AS ++QR++ LD F ++
Sbjct: 363 KIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 422
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
L+AT V GLD+P ++ V+ Y ++ I R GRT R
Sbjct: 423 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR 462
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 20/122 (16%)
Query: 536 LYYFILQHPGRT--------------------LVFCNSISSVKRLTQLLTMLKCSPLPLH 575
LYY + Q P T +++C S +++T L L H
Sbjct: 239 LYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYH 298
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
A++ + ++ +++AT G+D P + VIH+ + ++ E Y SGR
Sbjct: 299 ANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRA 358
Query: 636 AR 637
R
Sbjct: 359 GR 360
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 20/122 (16%)
Query: 1069 LYYFILQHPGRT--------------------LVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
LYY + Q P T +++C S +++T L L H
Sbjct: 239 LYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYH 298
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
A++ + ++ +++AT G+D P + VIH+ + ++ E Y SGR
Sbjct: 299 ANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRA 358
Query: 1169 AR 1170
R
Sbjct: 359 GR 360
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
M Q ++ + + +FR ++L+AT VA GLDI VI Y + T+EI + ++ AR
Sbjct: 448 MTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLV-TNEIAMVQARGRAR 506
Query: 1171 ANNEGLTLV 1179
A+ LV
Sbjct: 507 ADESTYVLV 515
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
M Q ++ + + +FR ++L+AT VA GLDI VI Y + T+EI + ++ AR
Sbjct: 448 MTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLV-TNEIAMVQARGRAR 506
Query: 638 ANNEGLTVV 646
A+ +V
Sbjct: 507 ADESTYVLV 515
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 1078 GRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
G+ N + ++++ + L L + H M +R+ + ++ F Q ++L+ T
Sbjct: 813 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 872
Query: 1136 VAARGLDIPG-----IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ G+DIP IE H+ + + ++ GR R++++ +L
Sbjct: 873 IIETGIDIPTANTIIIERADHFGLAQLHQL----RGRVGRSHHQAYAWLL 918
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 545 GRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 602
G+ N + ++++ + L L + H M +R+ + ++ F Q ++L+ T
Sbjct: 813 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 872
Query: 603 VAARGLDIPG-----IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
+ G+DIP IE H+ + + ++ GR R++++ +L
Sbjct: 873 IIETGIDIPTANTIIIERADHFGLAQLHQL----RGRVGRSHHQAYAWLL 918
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
+GFKT +IQS + +AL ++++ A TG+GKT
Sbjct: 75 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKT 109
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
+GFKT +IQS + +AL ++++ A TG+GKT
Sbjct: 75 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKT 109
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
+GFKT +IQS + +AL ++++ A TG+GKT
Sbjct: 75 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKT 109
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
+GFKT +IQS + +AL ++++ A TG+GKT
Sbjct: 75 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKT 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,385,256
Number of Sequences: 62578
Number of extensions: 1320976
Number of successful extensions: 3831
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3239
Number of HSP's gapped (non-prelim): 398
length of query: 1493
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1382
effective length of database: 8,027,179
effective search space: 11093561378
effective search space used: 11093561378
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)