Query psy16310
Match_columns 1493
No_of_seqs 1024 out of 5964
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 18:05:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0347|consensus 100.0 2.5E-77 5.4E-82 667.3 26.9 465 762-1254 175-641 (731)
2 KOG0330|consensus 100.0 4.7E-72 1E-76 603.3 35.8 392 765-1229 58-450 (476)
3 KOG0330|consensus 100.0 3.5E-67 7.5E-72 565.6 30.2 360 148-662 58-418 (476)
4 KOG0338|consensus 100.0 6.8E-67 1.5E-71 578.5 32.2 362 767-1196 180-545 (691)
5 KOG0347|consensus 100.0 1.8E-67 3.8E-72 588.4 22.4 403 147-660 177-579 (731)
6 KOG0331|consensus 100.0 1.9E-65 4.2E-70 595.3 34.4 364 769-1197 92-461 (519)
7 KOG0338|consensus 100.0 1.4E-65 3E-70 568.2 28.0 363 151-662 181-544 (691)
8 KOG0340|consensus 100.0 4.1E-64 8.8E-69 535.5 30.6 389 766-1223 5-398 (442)
9 KOG0342|consensus 100.0 7.7E-63 1.7E-67 549.0 34.8 383 764-1217 78-465 (543)
10 KOG0331|consensus 100.0 6.7E-63 1.4E-67 574.1 31.7 362 152-660 92-457 (519)
11 KOG0343|consensus 100.0 3.7E-62 8.1E-67 545.4 35.8 384 766-1219 67-455 (758)
12 KOG0333|consensus 100.0 3.8E-62 8.1E-67 543.6 32.8 379 762-1198 239-638 (673)
13 KOG0345|consensus 100.0 3.1E-61 6.7E-66 531.2 35.7 357 769-1190 5-370 (567)
14 COG0513 SrmB Superfamily II DN 100.0 2.4E-61 5.1E-66 593.0 38.6 363 768-1200 29-397 (513)
15 KOG0328|consensus 100.0 2.6E-61 5.6E-66 497.2 28.1 370 765-1208 24-395 (400)
16 KOG0340|consensus 100.0 2.7E-61 5.8E-66 513.9 26.5 360 150-660 6-370 (442)
17 KOG0342|consensus 100.0 3.7E-60 7.9E-65 527.6 31.5 362 151-660 82-446 (543)
18 KOG0326|consensus 100.0 2.7E-60 5.8E-65 497.4 22.2 360 768-1200 85-445 (459)
19 KOG0343|consensus 100.0 7.4E-60 1.6E-64 527.0 26.2 362 149-660 67-432 (758)
20 KOG0333|consensus 100.0 8E-59 1.7E-63 517.1 29.8 392 146-659 240-632 (673)
21 KOG0345|consensus 100.0 1.2E-58 2.6E-63 510.8 30.3 363 152-661 5-374 (567)
22 KOG0348|consensus 100.0 1.2E-58 2.5E-63 516.3 30.0 400 148-659 133-562 (708)
23 COG0513 SrmB Superfamily II DN 100.0 4.1E-58 8.9E-63 564.4 34.4 359 151-661 29-391 (513)
24 KOG0348|consensus 100.0 7.6E-58 1.6E-62 509.8 31.7 389 768-1195 136-565 (708)
25 PRK04837 ATP-dependent RNA hel 100.0 1.3E-56 2.8E-61 547.7 38.6 371 768-1201 8-379 (423)
26 PRK11634 ATP-dependent RNA hel 100.0 9.1E-56 2E-60 552.6 47.0 361 768-1200 6-368 (629)
27 KOG0335|consensus 100.0 3.7E-57 8E-62 515.9 31.1 368 765-1189 71-449 (482)
28 PTZ00110 helicase; Provisional 100.0 2.2E-56 4.7E-61 555.1 40.6 370 763-1198 125-498 (545)
29 KOG0336|consensus 100.0 2.3E-57 5.1E-62 489.0 25.7 364 768-1198 219-586 (629)
30 KOG0346|consensus 100.0 4.2E-56 9E-61 485.6 31.1 360 768-1192 19-418 (569)
31 PLN00206 DEAD-box ATP-dependen 100.0 2.2E-55 4.7E-60 545.4 40.4 369 764-1198 117-489 (518)
32 KOG0341|consensus 100.0 2.2E-57 4.8E-62 485.8 18.8 359 762-1184 164-528 (610)
33 KOG0328|consensus 100.0 1.8E-56 4E-61 461.3 24.7 358 149-662 25-384 (400)
34 PRK04537 ATP-dependent RNA hel 100.0 3E-55 6.4E-60 546.2 40.6 371 768-1200 9-380 (572)
35 PRK11776 ATP-dependent RNA hel 100.0 4E-55 8.6E-60 540.7 40.1 362 767-1201 3-366 (460)
36 PRK10590 ATP-dependent RNA hel 100.0 5E-55 1.1E-59 536.5 40.7 366 769-1200 2-368 (456)
37 KOG0326|consensus 100.0 3.9E-56 8.4E-61 466.2 19.3 355 149-660 83-438 (459)
38 KOG0339|consensus 100.0 7.7E-55 1.7E-59 481.7 30.2 369 763-1198 218-589 (731)
39 PTZ00110 helicase; Provisional 100.0 2.5E-54 5.4E-59 536.6 37.7 366 147-661 126-494 (545)
40 KOG0336|consensus 100.0 3.3E-55 7E-60 472.4 23.0 365 148-662 216-583 (629)
41 PRK04837 ATP-dependent RNA hel 100.0 3.3E-54 7.2E-59 526.6 34.7 362 151-659 8-370 (423)
42 PRK11192 ATP-dependent RNA hel 100.0 2.2E-53 4.9E-58 522.1 40.8 363 769-1199 2-367 (434)
43 KOG0335|consensus 100.0 3.2E-54 7E-59 491.9 28.6 370 149-659 72-452 (482)
44 KOG0332|consensus 100.0 8.7E-54 1.9E-58 458.8 27.9 369 759-1200 81-460 (477)
45 KOG0350|consensus 100.0 1.4E-53 3E-58 473.3 29.0 386 159-661 145-550 (620)
46 PLN00206 DEAD-box ATP-dependen 100.0 3.8E-53 8.3E-58 525.3 36.2 363 148-660 118-484 (518)
47 PRK10590 ATP-dependent RNA hel 100.0 5.2E-53 1.1E-57 518.6 36.5 360 152-661 2-362 (456)
48 PRK11776 ATP-dependent RNA hel 100.0 1.2E-52 2.6E-57 518.5 36.0 353 150-659 3-357 (460)
49 KOG0346|consensus 100.0 2.1E-53 4.5E-58 464.5 25.3 361 151-659 19-418 (569)
50 PRK04537 ATP-dependent RNA hel 100.0 2.2E-52 4.8E-57 520.4 36.2 364 151-660 9-373 (572)
51 PRK11634 ATP-dependent RNA hel 100.0 2.7E-52 5.9E-57 521.4 36.9 353 151-659 6-360 (629)
52 KOG0334|consensus 100.0 7.5E-53 1.6E-57 511.5 30.7 372 762-1197 359-733 (997)
53 PRK01297 ATP-dependent RNA hel 100.0 1.1E-51 2.4E-56 510.9 41.6 371 767-1200 86-458 (475)
54 KOG0341|consensus 100.0 7.1E-54 1.5E-58 458.9 17.9 358 147-652 166-529 (610)
55 KOG0350|consensus 100.0 9.5E-52 2E-56 458.7 34.4 386 778-1229 147-583 (620)
56 KOG0339|consensus 100.0 4.3E-52 9.4E-57 459.9 29.8 368 145-663 217-587 (731)
57 PRK11192 ATP-dependent RNA hel 100.0 2.1E-51 4.5E-56 504.7 37.5 357 152-660 2-361 (434)
58 KOG0337|consensus 100.0 1.1E-52 2.5E-57 457.0 21.1 362 768-1200 21-384 (529)
59 PRK01297 ATP-dependent RNA hel 100.0 1.1E-49 2.4E-54 493.0 37.8 363 150-659 86-450 (475)
60 PTZ00424 helicase 45; Provisio 100.0 1.8E-49 4E-54 484.7 38.2 360 767-1198 27-388 (401)
61 KOG0327|consensus 100.0 1.2E-50 2.7E-55 441.4 24.5 359 768-1199 26-385 (397)
62 KOG0332|consensus 100.0 1.9E-50 4.1E-55 433.2 25.3 354 143-653 82-445 (477)
63 KOG0334|consensus 100.0 1E-50 2.2E-55 493.0 25.6 366 147-660 361-729 (997)
64 KOG0337|consensus 100.0 7.4E-50 1.6E-54 435.0 19.7 356 151-661 21-378 (529)
65 KOG4284|consensus 100.0 3.1E-49 6.7E-54 447.9 24.1 359 765-1196 22-392 (980)
66 PTZ00424 helicase 45; Provisio 100.0 7.3E-48 1.6E-52 470.7 35.3 355 150-660 27-383 (401)
67 TIGR03817 DECH_helic helicase/ 100.0 3.1E-47 6.7E-52 485.4 37.9 372 774-1200 20-404 (742)
68 KOG0344|consensus 100.0 7.9E-48 1.7E-52 440.3 26.4 361 155-663 140-507 (593)
69 KOG0344|consensus 100.0 1.2E-47 2.7E-52 438.7 26.0 368 766-1197 130-508 (593)
70 KOG0951|consensus 100.0 6.7E-45 1.5E-49 439.2 49.1 388 156-681 294-732 (1674)
71 KOG0327|consensus 100.0 4.6E-47 1E-51 413.5 22.0 353 151-660 26-379 (397)
72 TIGR03817 DECH_helic helicase/ 100.0 6.9E-46 1.5E-50 473.1 34.7 361 157-654 20-389 (742)
73 PLN03137 ATP-dependent DNA hel 100.0 1.3E-45 2.8E-50 460.7 36.0 343 772-1194 441-797 (1195)
74 TIGR00580 mfd transcription-re 100.0 1.6E-45 3.5E-50 471.8 32.5 441 773-1330 434-900 (926)
75 KOG4284|consensus 100.0 1.5E-45 3.2E-50 418.1 20.2 357 148-653 22-381 (980)
76 PRK10689 transcription-repair 100.0 5.9E-44 1.3E-48 467.1 36.7 408 775-1298 585-1016(1147)
77 PLN03137 ATP-dependent DNA hel 100.0 6.2E-44 1.3E-48 445.7 34.0 347 152-661 436-797 (1195)
78 TIGR00614 recQ_fam ATP-depende 100.0 8E-44 1.7E-48 438.5 34.7 330 785-1195 6-344 (470)
79 KOG0952|consensus 100.0 3.2E-44 7E-49 429.9 22.7 384 168-684 105-524 (1230)
80 PRK11057 ATP-dependent DNA hel 100.0 2.6E-42 5.7E-47 435.3 36.0 338 775-1195 9-354 (607)
81 PRK02362 ski2-like helicase; P 100.0 3.7E-42 8E-47 445.7 34.7 347 769-1185 2-398 (737)
82 TIGR00614 recQ_fam ATP-depende 100.0 3.8E-42 8.1E-47 423.7 32.5 329 168-661 6-343 (470)
83 KOG0329|consensus 100.0 1.1E-43 2.5E-48 361.2 15.3 314 768-1187 42-358 (387)
84 PRK13767 ATP-dependent helicas 100.0 2E-41 4.3E-46 441.3 40.3 354 775-1183 18-397 (876)
85 TIGR01389 recQ ATP-dependent D 100.0 3.9E-41 8.4E-46 427.2 35.1 330 782-1194 4-341 (591)
86 PRK11057 ATP-dependent DNA hel 100.0 3.7E-41 8E-46 424.9 33.3 373 158-698 9-389 (607)
87 PRK02362 ski2-like helicase; P 100.0 4.5E-41 9.8E-46 435.6 34.1 348 152-651 2-397 (737)
88 TIGR02621 cas3_GSU0051 CRISPR- 100.0 6.5E-41 1.4E-45 415.1 33.5 320 786-1183 12-390 (844)
89 PRK00254 ski2-like helicase; P 100.0 1.4E-40 3E-45 429.9 36.1 338 769-1185 2-389 (720)
90 PRK13767 ATP-dependent helicas 100.0 3.4E-40 7.4E-45 429.8 35.3 360 158-649 18-396 (876)
91 TIGR01389 recQ ATP-dependent D 100.0 3.2E-40 6.8E-45 418.9 32.5 328 169-663 9-343 (591)
92 PRK10917 ATP-dependent DNA hel 100.0 1.1E-38 2.3E-43 406.5 36.9 315 778-1182 249-587 (681)
93 PRK00254 ski2-like helicase; P 100.0 4.2E-39 9E-44 416.2 33.5 345 152-652 2-389 (720)
94 COG1201 Lhr Lhr-like helicases 100.0 1.4E-38 3.1E-43 392.0 33.2 340 775-1183 8-361 (814)
95 PRK01172 ski2-like helicase; P 100.0 1.4E-38 3.1E-43 410.0 32.5 345 769-1193 2-388 (674)
96 KOG0329|consensus 100.0 7.8E-40 1.7E-44 333.2 15.8 312 151-652 42-356 (387)
97 TIGR00643 recG ATP-dependent D 100.0 3.7E-38 8E-43 399.4 34.2 317 779-1182 225-564 (630)
98 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.5E-38 7.6E-43 390.9 30.9 320 169-650 12-390 (844)
99 COG1111 MPH1 ERCC4-like helica 100.0 8.6E-38 1.9E-42 352.5 30.9 407 171-658 13-488 (542)
100 COG1201 Lhr Lhr-like helicases 100.0 2.9E-38 6.2E-43 389.2 29.4 351 157-650 7-361 (814)
101 COG0514 RecQ Superfamily II DN 100.0 8.3E-38 1.8E-42 371.8 29.2 333 782-1195 8-348 (590)
102 PRK01172 ski2-like helicase; P 100.0 2.1E-37 4.5E-42 399.2 32.1 342 152-652 2-379 (674)
103 PRK09751 putative ATP-dependen 100.0 4E-37 8.8E-42 402.8 34.6 329 811-1181 1-382 (1490)
104 TIGR00580 mfd transcription-re 100.0 4.2E-37 9.1E-42 394.4 33.8 322 157-652 435-771 (926)
105 COG1197 Mfd Transcription-repa 100.0 3.6E-37 7.8E-42 382.7 32.0 415 772-1301 576-1010(1139)
106 PRK09401 reverse gyrase; Revie 100.0 6.2E-37 1.3E-41 402.2 35.1 288 786-1156 77-410 (1176)
107 COG0514 RecQ Superfamily II DN 100.0 7.9E-37 1.7E-41 363.5 29.1 365 169-697 13-383 (590)
108 KOG0349|consensus 100.0 7.6E-38 1.6E-42 339.9 17.4 319 874-1199 284-630 (725)
109 PRK10917 ATP-dependent DNA hel 100.0 8.4E-36 1.8E-40 380.0 34.9 316 161-650 249-588 (681)
110 PRK10689 transcription-repair 100.0 5.4E-36 1.2E-40 392.5 33.6 319 160-651 588-919 (1147)
111 KOG0354|consensus 100.0 3.6E-36 7.7E-41 360.5 29.1 415 170-665 59-543 (746)
112 TIGR00643 recG ATP-dependent D 100.0 1.6E-35 3.4E-40 375.5 34.4 319 160-649 223-564 (630)
113 PRK09751 putative ATP-dependen 100.0 6.2E-36 1.3E-40 391.7 30.9 335 194-647 1-381 (1490)
114 KOG0349|consensus 100.0 9.5E-37 2.1E-41 331.4 18.9 332 256-659 283-623 (725)
115 PRK14701 reverse gyrase; Provi 100.0 6.3E-36 1.4E-40 399.6 28.2 334 778-1192 67-464 (1638)
116 PHA02653 RNA helicase NPH-II; 100.0 3.5E-35 7.6E-40 364.3 32.2 317 792-1192 166-522 (675)
117 TIGR01054 rgy reverse gyrase. 100.0 4E-35 8.7E-40 385.9 34.1 297 778-1156 66-409 (1171)
118 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.4E-34 5.1E-39 365.7 31.2 298 801-1186 12-338 (819)
119 PRK09401 reverse gyrase; Revie 100.0 1.7E-34 3.6E-39 379.4 30.4 327 164-638 71-431 (1176)
120 PHA02653 RNA helicase NPH-II; 100.0 1E-34 2.2E-39 360.2 25.9 321 175-653 166-516 (675)
121 COG1111 MPH1 ERCC4-like helica 100.0 5.4E-34 1.2E-38 321.9 29.1 347 787-1186 12-483 (542)
122 KOG0952|consensus 100.0 2.2E-34 4.7E-39 345.9 27.3 374 784-1227 104-526 (1230)
123 COG1202 Superfamily II helicas 100.0 1.6E-34 3.5E-39 325.6 24.4 340 770-1186 196-555 (830)
124 PRK12898 secA preprotein trans 100.0 3.6E-34 7.7E-39 348.4 29.4 347 786-1185 100-587 (656)
125 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.2E-34 9E-39 363.5 30.3 306 184-656 12-341 (819)
126 PRK09200 preprotein translocas 100.0 5.8E-33 1.3E-37 345.1 37.5 352 786-1186 75-543 (790)
127 PRK11664 ATP-dependent RNA hel 100.0 6.2E-34 1.3E-38 363.2 27.8 298 801-1186 15-341 (812)
128 COG1204 Superfamily II helicas 100.0 1.2E-33 2.6E-38 355.4 29.4 345 774-1185 15-409 (766)
129 COG1204 Superfamily II helicas 100.0 9E-34 1.9E-38 356.4 28.3 347 157-652 15-409 (766)
130 PHA02558 uvsW UvsW helicase; P 100.0 8.5E-34 1.8E-38 351.0 27.3 324 788-1181 112-449 (501)
131 COG1202 Superfamily II helicas 100.0 1.1E-33 2.3E-38 319.0 24.1 341 152-652 195-554 (830)
132 PRK11664 ATP-dependent RNA hel 100.0 1.2E-33 2.6E-38 360.5 27.7 305 184-655 15-343 (812)
133 PRK12898 secA preprotein trans 100.0 2E-33 4.4E-38 341.8 28.2 406 169-654 100-589 (656)
134 PRK14701 reverse gyrase; Provi 100.0 8E-34 1.7E-38 379.6 26.7 352 161-659 67-464 (1638)
135 PRK09200 preprotein translocas 100.0 2.2E-33 4.7E-38 348.9 28.1 406 169-654 75-544 (790)
136 KOG0352|consensus 100.0 2.8E-33 6E-38 304.9 24.8 336 779-1193 7-371 (641)
137 TIGR01587 cas3_core CRISPR-ass 100.0 2.4E-33 5.1E-38 336.8 25.8 300 808-1183 1-335 (358)
138 TIGR00963 secA preprotein tran 100.0 1.3E-31 2.9E-36 326.8 37.4 351 786-1186 53-519 (745)
139 TIGR03714 secA2 accessory Sec 100.0 1.7E-31 3.7E-36 328.4 37.5 350 786-1186 67-539 (762)
140 PHA02558 uvsW UvsW helicase; P 100.0 2.9E-32 6.3E-37 337.4 28.4 334 171-648 112-449 (501)
141 PRK13766 Hef nuclease; Provisi 100.0 1.2E-31 2.5E-36 353.2 34.5 405 170-655 12-483 (773)
142 TIGR00963 secA preprotein tran 100.0 2.6E-32 5.7E-37 332.9 25.4 418 170-655 54-521 (745)
143 TIGR03714 secA2 accessory Sec 100.0 8.3E-32 1.8E-36 331.1 28.3 417 170-655 68-541 (762)
144 TIGR01587 cas3_core CRISPR-ass 100.0 7.2E-32 1.6E-36 324.0 27.2 304 191-652 1-337 (358)
145 TIGR01054 rgy reverse gyrase. 100.0 8.4E-32 1.8E-36 354.6 30.0 315 161-624 66-410 (1171)
146 KOG0354|consensus 100.0 9.2E-32 2E-36 322.7 26.7 364 776-1192 48-537 (746)
147 KOG0351|consensus 100.0 1.5E-31 3.2E-36 337.2 27.8 337 780-1196 254-604 (941)
148 COG1205 Distinct helicase fami 100.0 2.7E-31 5.8E-36 339.2 30.3 354 775-1184 55-422 (851)
149 KOG0352|consensus 100.0 2.5E-31 5.4E-36 289.7 24.8 350 162-660 7-371 (641)
150 TIGR03158 cas3_cyano CRISPR-as 100.0 1.5E-30 3.3E-35 307.9 27.8 309 794-1169 1-357 (357)
151 COG1205 Distinct helicase fami 100.0 1.1E-30 2.3E-35 333.7 28.3 359 158-654 55-425 (851)
152 PRK13766 Hef nuclease; Provisi 100.0 1.1E-29 2.4E-34 334.4 35.3 347 787-1186 12-481 (773)
153 KOG0951|consensus 100.0 5.4E-30 1.2E-34 311.0 27.8 380 773-1223 294-733 (1674)
154 COG1200 RecG RecG-like helicas 100.0 1.5E-29 3.2E-34 299.2 27.7 363 774-1256 246-634 (677)
155 PRK05580 primosome assembly pr 100.0 1.9E-28 4.1E-33 310.9 39.6 321 789-1186 143-551 (679)
156 KOG0351|consensus 100.0 7.1E-30 1.5E-34 322.0 24.3 337 164-663 255-604 (941)
157 TIGR00603 rad25 DNA repair hel 100.0 1.9E-29 4.1E-34 310.7 27.0 329 789-1188 254-611 (732)
158 TIGR03158 cas3_cyano CRISPR-as 100.0 5.4E-29 1.2E-33 294.7 27.0 310 177-636 1-357 (357)
159 PRK11131 ATP-dependent RNA hel 100.0 5E-29 1.1E-33 321.1 25.8 297 797-1186 80-413 (1294)
160 PRK11131 ATP-dependent RNA hel 100.0 9.3E-29 2E-33 318.6 25.7 111 542-655 284-415 (1294)
161 TIGR00603 rad25 DNA repair hel 100.0 3.1E-28 6.8E-33 300.0 27.8 339 172-655 254-611 (732)
162 KOG0353|consensus 100.0 4.5E-28 9.8E-33 259.7 23.8 338 772-1191 75-474 (695)
163 PRK05580 primosome assembly pr 99.9 5.4E-26 1.2E-30 288.6 33.7 366 173-659 144-557 (679)
164 TIGR00595 priA primosomal prot 99.9 3.1E-26 6.8E-31 280.4 29.6 294 810-1189 1-386 (505)
165 TIGR01967 DEAH_box_HrpA ATP-de 99.9 2.1E-26 4.5E-31 298.5 28.6 311 786-1186 60-406 (1283)
166 PRK04914 ATP-dependent helicas 99.9 1.9E-25 4.2E-30 285.4 36.0 153 1063-1215 478-636 (956)
167 PRK09694 helicase Cas3; Provis 99.9 5.6E-26 1.2E-30 288.7 29.6 333 788-1173 284-664 (878)
168 TIGR01967 DEAH_box_HrpA ATP-de 99.9 3.1E-26 6.8E-31 296.8 27.8 322 169-655 60-408 (1283)
169 PRK13104 secA preprotein trans 99.9 3.8E-25 8.3E-30 273.8 36.0 347 790-1185 82-588 (896)
170 PRK13104 secA preprotein trans 99.9 6.1E-26 1.3E-30 280.8 25.0 416 170-654 80-590 (896)
171 KOG0353|consensus 99.9 5.8E-26 1.2E-30 243.6 21.5 344 154-659 74-475 (695)
172 PRK12899 secA preprotein trans 99.9 1.3E-25 2.7E-30 276.7 27.1 152 154-350 65-229 (970)
173 PRK12899 secA preprotein trans 99.9 3.1E-24 6.6E-29 264.6 38.9 152 771-967 65-229 (970)
174 COG1200 RecG RecG-like helicas 99.9 2.4E-25 5.2E-30 263.7 26.9 334 157-665 246-606 (677)
175 PRK12904 preprotein translocas 99.9 6.5E-24 1.4E-28 263.2 36.1 350 786-1185 78-574 (830)
176 COG1061 SSL2 DNA or RNA helica 99.9 3.3E-25 7.2E-30 268.6 24.0 315 788-1171 34-376 (442)
177 PRK12904 preprotein translocas 99.9 9.7E-25 2.1E-29 270.5 27.2 404 169-654 78-576 (830)
178 PRK12906 secA preprotein trans 99.9 5E-24 1.1E-28 263.2 33.1 348 789-1185 79-554 (796)
179 PRK04914 ATP-dependent helicas 99.9 9.7E-25 2.1E-29 279.0 27.5 121 528-648 476-600 (956)
180 KOG0947|consensus 99.9 4.2E-25 9.1E-30 262.9 21.3 383 169-659 294-730 (1248)
181 cd00268 DEADc DEAD-box helicas 99.9 1.3E-24 2.9E-29 239.1 23.4 192 770-1007 1-192 (203)
182 cd00268 DEADc DEAD-box helicas 99.9 2.1E-24 4.5E-29 237.5 23.1 192 153-418 1-192 (203)
183 TIGR00595 priA primosomal prot 99.9 4.6E-24 1E-28 261.3 28.3 102 557-658 271-388 (505)
184 PRK12906 secA preprotein trans 99.9 2.1E-24 4.6E-29 266.4 25.1 414 170-653 78-555 (796)
185 KOG2340|consensus 99.9 8.9E-25 1.9E-29 245.5 19.2 394 170-656 213-673 (698)
186 PRK09694 helicase Cas3; Provis 99.9 6.6E-24 1.4E-28 269.9 29.6 335 171-640 284-664 (878)
187 KOG0948|consensus 99.9 2.6E-25 5.5E-30 258.3 14.9 359 173-651 129-539 (1041)
188 COG4581 Superfamily II RNA hel 99.9 1.6E-24 3.5E-29 271.0 21.7 372 167-653 114-539 (1041)
189 COG1061 SSL2 DNA or RNA helica 99.9 6.4E-24 1.4E-28 257.4 24.0 111 532-643 269-382 (442)
190 KOG0947|consensus 99.9 8.8E-24 1.9E-28 251.7 23.0 340 790-1192 297-733 (1248)
191 COG4581 Superfamily II RNA hel 99.9 7.8E-24 1.7E-28 264.9 22.3 342 783-1184 113-537 (1041)
192 KOG0926|consensus 99.9 2.3E-24 5E-29 251.6 15.4 344 157-654 243-707 (1172)
193 KOG0950|consensus 99.9 9.3E-24 2E-28 254.7 19.6 364 775-1195 207-622 (1008)
194 PRK13107 preprotein translocas 99.9 2.4E-22 5.2E-27 248.0 32.3 350 787-1186 80-593 (908)
195 KOG0950|consensus 99.9 1.8E-23 3.9E-28 252.2 19.8 367 158-659 207-619 (1008)
196 PRK11448 hsdR type I restricti 99.9 6.9E-23 1.5E-27 268.5 26.7 324 789-1173 412-802 (1123)
197 KOG0948|consensus 99.9 3.3E-24 7.2E-29 249.1 12.7 341 790-1194 129-550 (1041)
198 COG1197 Mfd Transcription-repa 99.9 2.6E-22 5.5E-27 251.0 29.3 322 156-652 577-914 (1139)
199 PRK11448 hsdR type I restricti 99.9 1.5E-22 3.3E-27 265.2 27.8 94 544-639 698-801 (1123)
200 PRK13107 preprotein translocas 99.9 7.3E-23 1.6E-27 252.5 21.7 420 170-654 80-594 (908)
201 COG4098 comFA Superfamily II D 99.9 1.6E-21 3.5E-26 209.2 26.3 300 790-1184 97-415 (441)
202 PF06862 DUF1253: Protein of u 99.9 3.6E-21 7.8E-26 224.2 25.6 337 248-659 26-423 (442)
203 PF00270 DEAD: DEAD/DEAH box h 99.9 1.3E-21 2.7E-26 208.8 18.6 165 792-1003 1-166 (169)
204 PF00270 DEAD: DEAD/DEAH box h 99.9 1.4E-21 3E-26 208.5 18.3 166 175-415 1-167 (169)
205 KOG0922|consensus 99.9 3.4E-21 7.3E-26 225.9 21.1 308 180-655 58-394 (674)
206 COG1643 HrpA HrpA-like helicas 99.9 1.5E-20 3.3E-25 235.1 20.9 114 540-654 255-390 (845)
207 COG4098 comFA Superfamily II D 99.8 2E-19 4.3E-24 193.3 26.0 310 173-653 97-418 (441)
208 COG1203 CRISPR-associated heli 99.8 3.8E-20 8.2E-25 237.8 22.9 329 791-1185 196-551 (733)
209 KOG0923|consensus 99.8 3.3E-20 7.1E-25 213.8 18.3 311 174-651 266-606 (902)
210 PRK12900 secA preprotein trans 99.8 4.9E-20 1.1E-24 228.2 19.6 163 491-655 542-715 (1025)
211 TIGR01407 dinG_rel DnaQ family 99.8 2.4E-18 5.3E-23 226.2 32.2 126 1071-1197 668-829 (850)
212 TIGR00631 uvrb excinuclease AB 99.8 1.1E-18 2.4E-23 218.7 27.5 129 1063-1192 425-561 (655)
213 PRK12900 secA preprotein trans 99.8 1.7E-18 3.6E-23 214.7 27.6 127 1058-1186 576-713 (1025)
214 PLN03142 Probable chromatin-re 99.8 5.2E-18 1.1E-22 218.2 30.1 124 528-651 468-599 (1033)
215 COG1198 PriA Primosomal protei 99.8 1.5E-17 3.3E-22 205.4 32.8 320 789-1189 197-608 (730)
216 PLN03142 Probable chromatin-re 99.8 9.5E-18 2.1E-22 215.8 27.9 340 790-1184 169-599 (1033)
217 KOG0924|consensus 99.8 1.1E-18 2.3E-23 201.4 16.1 108 543-651 562-697 (1042)
218 COG1110 Reverse gyrase [DNA re 99.8 1.5E-17 3.3E-22 202.1 26.1 291 781-1155 73-416 (1187)
219 COG1110 Reverse gyrase [DNA re 99.8 1.5E-17 3.2E-22 202.2 25.4 318 164-622 73-416 (1187)
220 TIGR00631 uvrb excinuclease AB 99.8 2.6E-17 5.7E-22 206.4 28.5 116 543-659 441-561 (655)
221 COG1643 HrpA HrpA-like helicas 99.8 7E-18 1.5E-22 211.4 21.7 297 801-1184 60-387 (845)
222 TIGR01407 dinG_rel DnaQ family 99.8 6.1E-17 1.3E-21 213.1 31.2 115 535-650 665-813 (850)
223 KOG0949|consensus 99.8 1.7E-17 3.6E-22 199.0 20.8 164 173-414 511-675 (1330)
224 TIGR00348 hsdR type I site-spe 99.8 4.3E-17 9.2E-22 207.6 24.5 322 790-1171 238-634 (667)
225 COG1203 CRISPR-associated heli 99.7 5E-17 1.1E-21 209.2 24.0 333 174-654 196-553 (733)
226 PRK07246 bifunctional ATP-depe 99.7 3.1E-16 6.7E-21 202.8 30.0 120 1075-1198 645-799 (820)
227 KOG0922|consensus 99.7 1.3E-16 2.9E-21 187.7 20.8 299 802-1186 62-392 (674)
228 KOG0920|consensus 99.7 2.1E-16 4.5E-21 196.8 23.6 342 175-654 175-547 (924)
229 KOG0949|consensus 99.7 2.6E-16 5.7E-21 188.8 22.7 163 790-1002 511-674 (1330)
230 COG4096 HsdR Type I site-speci 99.7 1.2E-16 2.5E-21 192.2 19.7 315 789-1171 164-525 (875)
231 PRK05298 excinuclease ABC subu 99.7 2.1E-16 4.5E-21 200.5 23.1 136 1065-1201 431-583 (652)
232 COG1198 PriA Primosomal protei 99.7 4.2E-16 9.2E-21 192.7 22.5 369 172-660 197-612 (730)
233 COG0556 UvrB Helicase subunit 99.7 1E-14 2.3E-19 166.2 30.9 120 1063-1183 429-556 (663)
234 PRK13103 secA preprotein trans 99.7 1.5E-14 3.2E-19 179.8 34.0 348 786-1185 79-592 (913)
235 PRK12326 preprotein translocas 99.7 2E-15 4.3E-20 182.8 25.2 401 170-652 76-548 (764)
236 PRK13103 secA preprotein trans 99.7 1.8E-15 3.8E-20 187.9 23.6 418 170-654 80-594 (913)
237 TIGR00348 hsdR type I site-spe 99.7 2.1E-15 4.5E-20 192.3 24.5 94 544-638 514-634 (667)
238 KOG0923|consensus 99.7 4.3E-15 9.4E-20 172.1 24.2 303 794-1182 269-604 (902)
239 PRK12326 preprotein translocas 99.7 9.4E-15 2E-19 177.0 27.2 349 786-1185 75-548 (764)
240 KOG0920|consensus 99.7 3.6E-15 7.8E-20 185.9 23.6 331 793-1185 176-545 (924)
241 KOG1123|consensus 99.7 1.1E-15 2.3E-20 171.3 16.9 331 789-1188 301-657 (776)
242 PRK07246 bifunctional ATP-depe 99.7 1.7E-14 3.7E-19 186.8 29.0 106 542-651 645-783 (820)
243 KOG0924|consensus 99.6 5.2E-15 1.1E-19 171.4 20.0 304 793-1183 359-696 (1042)
244 COG0556 UvrB Helicase subunit 99.6 1.8E-14 4E-19 164.2 24.0 107 543-650 445-556 (663)
245 smart00487 DEXDc DEAD-like hel 99.6 5.7E-15 1.2E-19 161.9 19.5 174 785-1007 3-178 (201)
246 KOG4150|consensus 99.6 2.9E-15 6.3E-20 169.6 16.9 336 784-1186 280-642 (1034)
247 COG4096 HsdR Type I site-speci 99.6 3.7E-15 7.9E-20 179.6 18.5 341 172-638 164-525 (875)
248 TIGR03117 cas_csf4 CRISPR-asso 99.6 1.7E-13 3.7E-18 168.9 31.2 116 1067-1184 460-616 (636)
249 smart00487 DEXDc DEAD-like hel 99.6 1E-14 2.2E-19 159.9 18.7 174 168-418 3-178 (201)
250 PRK08074 bifunctional ATP-depe 99.6 1.8E-13 3.9E-18 180.9 32.7 124 1073-1196 748-907 (928)
251 PRK12903 secA preprotein trans 99.6 3.3E-14 7.2E-19 174.4 22.3 397 170-653 76-541 (925)
252 PF00271 Helicase_C: Helicase 99.6 1.4E-15 3.1E-20 138.5 8.1 78 1095-1172 1-78 (78)
253 KOG4150|consensus 99.6 5.7E-15 1.2E-19 167.3 14.3 353 164-655 277-644 (1034)
254 KOG0926|consensus 99.6 2.3E-14 5E-19 169.0 19.5 303 801-1183 266-703 (1172)
255 PF00271 Helicase_C: Helicase 99.6 1.7E-15 3.7E-20 138.0 8.1 78 562-639 1-78 (78)
256 cd00079 HELICc Helicase superf 99.6 5.8E-15 1.3E-19 149.9 12.9 117 1064-1180 12-131 (131)
257 cd00079 HELICc Helicase superf 99.6 7.3E-15 1.6E-19 149.2 11.9 117 531-647 12-131 (131)
258 PRK12903 secA preprotein trans 99.6 1.3E-12 2.7E-17 160.8 33.1 349 786-1185 75-540 (925)
259 KOG0925|consensus 99.6 3.8E-14 8.1E-19 158.9 18.0 330 150-651 24-387 (699)
260 CHL00122 secA preprotein trans 99.6 1.8E-12 3.8E-17 160.9 32.2 132 786-965 73-208 (870)
261 CHL00122 secA preprotein trans 99.6 2.2E-13 4.7E-18 168.8 22.9 132 169-349 73-209 (870)
262 KOG0953|consensus 99.6 8E-14 1.7E-18 159.3 17.6 254 878-1194 217-486 (700)
263 KOG0385|consensus 99.5 9.4E-13 2E-17 155.7 26.4 392 173-653 167-601 (971)
264 PRK05298 excinuclease ABC subu 99.5 2.6E-14 5.6E-19 181.6 14.1 125 532-657 431-563 (652)
265 KOG0387|consensus 99.5 4.1E-12 8.8E-17 151.4 28.5 126 528-653 527-660 (923)
266 PRK12902 secA preprotein trans 99.5 1.1E-11 2.3E-16 153.4 32.8 132 786-966 82-218 (939)
267 TIGR03117 cas_csf4 CRISPR-asso 99.5 3.7E-12 8.1E-17 157.2 28.1 115 534-651 460-616 (636)
268 KOG0385|consensus 99.5 2.6E-12 5.6E-17 152.1 24.7 338 790-1185 167-600 (971)
269 PRK08074 bifunctional ATP-depe 99.5 3.8E-12 8.3E-17 168.4 29.2 117 535-651 743-893 (928)
270 PRK12902 secA preprotein trans 99.5 2.4E-12 5.2E-17 159.0 24.4 131 170-349 83-218 (939)
271 cd00046 DEXDc DEAD-like helica 99.4 2.1E-12 4.6E-17 132.8 16.5 144 807-999 1-144 (144)
272 KOG1123|consensus 99.4 6.6E-13 1.4E-17 149.3 12.5 339 172-655 301-657 (776)
273 TIGR02562 cas3_yersinia CRISPR 99.4 3.5E-12 7.6E-17 159.9 19.8 91 1080-1173 759-881 (1110)
274 COG4889 Predicted helicase [Ge 99.4 4.4E-13 9.6E-18 159.1 11.1 93 1079-1171 462-572 (1518)
275 cd00046 DEXDc DEAD-like helica 99.4 4.2E-12 9.1E-17 130.6 17.0 121 190-354 1-121 (144)
276 KOG0925|consensus 99.4 1.2E-11 2.6E-16 139.2 20.5 327 767-1184 24-387 (699)
277 smart00490 HELICc helicase sup 99.4 6.9E-13 1.5E-17 122.2 8.1 81 1092-1172 2-82 (82)
278 KOG0390|consensus 99.4 3.5E-11 7.7E-16 148.3 25.3 121 530-650 577-706 (776)
279 smart00490 HELICc helicase sup 99.4 8.9E-13 1.9E-17 121.5 8.5 81 559-639 2-82 (82)
280 KOG0953|consensus 99.4 2.6E-12 5.7E-17 147.1 12.4 112 544-658 357-483 (700)
281 PRK11747 dinG ATP-dependent DN 99.4 2.6E-10 5.6E-15 146.4 31.4 117 1076-1196 533-688 (697)
282 KOG0387|consensus 99.4 1.4E-10 2.9E-15 138.7 26.1 131 1065-1195 531-672 (923)
283 PF04851 ResIII: Type III rest 99.3 6.1E-12 1.3E-16 136.1 12.9 157 790-1001 3-184 (184)
284 COG4889 Predicted helicase [Ge 99.3 4E-12 8.6E-17 151.2 11.7 102 546-647 462-584 (1518)
285 COG1199 DinG Rad3-related DNA 99.3 1.7E-10 3.7E-15 149.9 26.2 114 1066-1182 468-615 (654)
286 PF04851 ResIII: Type III rest 99.3 1.5E-11 3.1E-16 133.1 13.3 134 173-351 3-161 (184)
287 KOG0392|consensus 99.3 9.3E-11 2E-15 145.2 21.0 115 527-641 1306-1442(1549)
288 KOG0384|consensus 99.3 2.8E-11 6E-16 150.6 16.4 125 529-653 681-813 (1373)
289 PRK14873 primosome assembly pr 99.3 1.9E-10 4.2E-15 144.4 22.7 129 815-1003 169-307 (665)
290 KOG0390|consensus 99.3 5E-10 1.1E-14 138.3 25.3 115 1066-1180 580-701 (776)
291 COG1199 DinG Rad3-related DNA 99.3 3E-10 6.4E-15 147.7 23.9 107 532-641 467-607 (654)
292 PRK11747 dinG ATP-dependent DN 99.3 1.8E-09 4E-14 138.6 30.6 82 536-622 527-615 (697)
293 PRK12901 secA preprotein trans 99.2 3E-10 6.5E-15 142.1 21.5 159 493-653 574-743 (1112)
294 PF06862 DUF1253: Protein of u 99.2 2.5E-09 5.4E-14 125.8 27.3 306 870-1192 31-423 (442)
295 TIGR02562 cas3_yersinia CRISPR 99.2 2.6E-10 5.7E-15 143.4 19.7 91 547-640 759-881 (1110)
296 PRK12901 secA preprotein trans 99.2 4.5E-09 9.6E-14 131.8 28.8 123 1061-1185 609-742 (1112)
297 KOG2340|consensus 99.2 1.3E-09 2.9E-14 124.5 19.5 369 789-1192 215-676 (698)
298 KOG0384|consensus 99.1 5.1E-10 1.1E-14 139.6 16.8 110 1076-1185 698-812 (1373)
299 KOG1000|consensus 99.1 2.2E-09 4.7E-14 121.7 19.5 337 775-1178 191-595 (689)
300 KOG1000|consensus 99.1 1.9E-09 4E-14 122.2 17.9 124 531-654 472-606 (689)
301 TIGR00604 rad3 DNA repair heli 99.1 1.3E-08 2.8E-13 132.3 28.0 84 1073-1156 518-615 (705)
302 KOG0389|consensus 99.1 1.8E-09 3.9E-14 129.1 17.8 125 530-654 760-891 (941)
303 TIGR00604 rad3 DNA repair heli 99.1 2.7E-08 5.9E-13 129.3 28.3 115 535-649 513-672 (705)
304 KOG0392|consensus 99.0 1.4E-08 3E-13 126.5 21.6 107 1078-1184 1341-1454(1549)
305 KOG0389|consensus 99.0 4.4E-09 9.5E-14 125.9 16.5 124 1063-1186 760-890 (941)
306 PRK14873 primosome assembly pr 99.0 9.4E-09 2E-13 129.4 20.6 78 259-348 188-269 (665)
307 PF02399 Herpes_ori_bp: Origin 98.8 1E-07 2.2E-12 117.8 19.0 310 807-1184 50-388 (824)
308 PF07652 Flavi_DEAD: Flaviviru 98.7 4.4E-08 9.6E-13 96.1 9.9 138 805-1003 3-140 (148)
309 PF02399 Herpes_ori_bp: Origin 98.7 5.8E-07 1.3E-11 111.2 21.6 103 543-652 281-389 (824)
310 PF07652 Flavi_DEAD: Flaviviru 98.7 5.2E-08 1.1E-12 95.6 10.1 105 188-348 3-107 (148)
311 smart00489 DEXDc3 DEAD-like he 98.7 8.7E-08 1.9E-12 110.1 13.6 44 790-833 8-54 (289)
312 smart00488 DEXDc2 DEAD-like he 98.7 8.7E-08 1.9E-12 110.1 13.6 44 790-833 8-54 (289)
313 smart00488 DEXDc2 DEAD-like he 98.7 1E-07 2.3E-12 109.5 13.9 46 170-216 6-54 (289)
314 smart00489 DEXDc3 DEAD-like he 98.7 1E-07 2.3E-12 109.5 13.9 46 170-216 6-54 (289)
315 KOG0386|consensus 98.6 9.1E-07 2E-11 109.2 18.5 108 1074-1181 723-833 (1157)
316 PF00176 SNF2_N: SNF2 family N 98.6 7.2E-08 1.6E-12 113.3 8.9 151 806-1002 25-175 (299)
317 KOG0386|consensus 98.6 5.1E-07 1.1E-11 111.4 15.5 120 529-648 708-833 (1157)
318 COG0553 HepA Superfamily II DN 98.6 2.1E-06 4.5E-11 117.0 23.6 114 531-644 692-813 (866)
319 KOG0921|consensus 98.6 4.2E-07 9.1E-12 110.1 13.2 108 544-652 643-775 (1282)
320 KOG1002|consensus 98.6 3.1E-06 6.8E-11 96.3 19.3 107 545-651 639-749 (791)
321 COG0653 SecA Preprotein transl 98.5 1.6E-06 3.6E-11 108.1 18.2 157 494-652 376-546 (822)
322 KOG4439|consensus 98.5 1.8E-06 3.9E-11 102.7 17.1 103 544-646 746-851 (901)
323 COG0610 Type I site-specific r 98.5 2.3E-05 5.1E-10 103.8 27.8 140 807-1000 274-414 (962)
324 KOG4439|consensus 98.5 4.3E-06 9.2E-11 99.6 17.6 103 1077-1179 746-851 (901)
325 KOG1002|consensus 98.4 7.3E-06 1.6E-10 93.4 18.3 122 1063-1184 619-749 (791)
326 PF00176 SNF2_N: SNF2 family N 98.4 3.6E-07 7.8E-12 107.3 8.5 122 188-348 24-146 (299)
327 TIGR00596 rad1 DNA repair prot 98.4 3.9E-06 8.4E-11 107.7 17.2 52 310-364 8-59 (814)
328 COG0653 SecA Preprotein transl 98.4 2.2E-05 4.8E-10 98.3 21.8 121 1062-1184 411-545 (822)
329 PF07517 SecA_DEAD: SecA DEAD- 98.3 4E-06 8.7E-11 93.5 13.2 131 789-966 76-210 (266)
330 PF07517 SecA_DEAD: SecA DEAD- 98.3 4.2E-06 9.2E-11 93.3 12.7 133 169-349 74-210 (266)
331 KOG0388|consensus 98.3 1.7E-05 3.7E-10 94.1 17.4 108 1069-1176 1036-1144(1185)
332 COG0553 HepA Superfamily II DN 98.3 2.1E-05 4.6E-10 107.1 20.3 117 1064-1180 692-816 (866)
333 PRK15483 type III restriction- 98.2 7.6E-06 1.6E-10 104.7 12.8 73 1127-1199 501-583 (986)
334 KOG1015|consensus 98.2 0.00032 7E-09 86.2 25.5 121 526-646 1121-1270(1567)
335 KOG0921|consensus 98.2 5.2E-06 1.1E-10 101.0 10.3 105 1077-1182 643-772 (1282)
336 COG3587 Restriction endonuclea 98.0 0.00014 2.9E-09 89.5 18.1 75 1126-1200 482-569 (985)
337 PRK15483 type III restriction- 97.9 0.00014 3E-09 93.5 15.6 45 594-638 501-545 (986)
338 PF13307 Helicase_C_2: Helicas 97.9 3.1E-05 6.7E-10 81.6 7.5 113 537-652 2-150 (167)
339 COG0610 Type I site-specific r 97.8 0.00032 6.9E-09 93.3 18.0 114 190-348 274-388 (962)
340 PF13307 Helicase_C_2: Helicas 97.7 8.7E-05 1.9E-09 78.3 7.1 112 1070-1183 2-149 (167)
341 TIGR00596 rad1 DNA repair prot 97.6 0.0025 5.3E-08 82.5 21.0 67 927-1001 8-74 (814)
342 COG3587 Restriction endonuclea 97.4 0.00047 1E-08 85.0 9.4 45 593-637 482-526 (985)
343 PF13086 AAA_11: AAA domain; P 97.4 0.00077 1.7E-08 75.8 10.7 73 174-281 2-75 (236)
344 KOG0391|consensus 97.4 0.00058 1.3E-08 85.7 9.9 123 526-652 1258-1388(1958)
345 PF13086 AAA_11: AAA domain; P 97.3 0.001 2.2E-08 74.8 10.2 73 791-898 2-75 (236)
346 KOG0391|consensus 97.0 0.002 4.2E-08 81.2 8.8 125 1058-1186 1257-1389(1958)
347 PF02562 PhoH: PhoH-like prote 97.0 0.00098 2.1E-08 71.6 5.4 44 172-216 3-46 (205)
348 PF02562 PhoH: PhoH-like prote 96.9 0.0025 5.3E-08 68.5 8.2 43 790-833 4-46 (205)
349 KOG1802|consensus 96.9 0.0043 9.4E-08 74.3 10.6 84 782-911 402-485 (935)
350 PF13604 AAA_30: AAA domain; P 96.9 0.0026 5.7E-08 69.0 8.4 64 790-895 1-65 (196)
351 PF09848 DUF2075: Uncharacteri 96.9 0.0027 5.8E-08 76.0 9.2 96 808-968 3-98 (352)
352 PF13872 AAA_34: P-loop contai 96.9 0.006 1.3E-07 68.5 11.1 176 772-1005 25-226 (303)
353 KOG0388|consensus 96.9 0.0029 6.3E-08 75.9 9.0 123 529-651 1026-1154(1185)
354 KOG1803|consensus 96.9 0.0041 8.9E-08 74.6 10.3 65 173-279 185-249 (649)
355 PF13604 AAA_30: AAA domain; P 96.9 0.0046 9.9E-08 67.1 10.0 64 173-278 1-65 (196)
356 PF13245 AAA_19: Part of AAA d 96.9 0.0037 8E-08 55.9 7.3 61 798-896 2-62 (76)
357 TIGR00376 DNA helicase, putati 96.8 0.0076 1.6E-07 77.1 12.7 68 172-281 156-223 (637)
358 KOG1803|consensus 96.8 0.0058 1.3E-07 73.3 10.5 65 790-896 185-249 (649)
359 PF09848 DUF2075: Uncharacteri 96.8 0.0032 6.8E-08 75.4 8.6 96 191-351 3-98 (352)
360 PF13245 AAA_19: Part of AAA d 96.8 0.0047 1E-07 55.2 7.5 61 181-279 2-62 (76)
361 PF12340 DUF3638: Protein of u 96.7 0.017 3.7E-07 62.6 12.7 128 769-940 4-144 (229)
362 TIGR00376 DNA helicase, putati 96.7 0.009 1.9E-07 76.5 12.3 68 789-898 156-223 (637)
363 PF13872 AAA_34: P-loop contai 96.7 0.0089 1.9E-07 67.1 10.4 145 155-351 25-187 (303)
364 PRK10536 hypothetical protein; 96.7 0.022 4.7E-07 63.1 13.0 45 786-831 55-99 (262)
365 KOG1132|consensus 96.7 0.005 1.1E-07 76.7 8.9 39 789-827 20-61 (945)
366 KOG1132|consensus 96.5 0.012 2.6E-07 73.5 11.0 41 173-213 21-64 (945)
367 PRK10536 hypothetical protein; 96.5 0.022 4.7E-07 63.1 11.6 45 169-214 55-99 (262)
368 PF12340 DUF3638: Protein of u 96.5 0.029 6.3E-07 60.9 12.2 156 152-351 4-187 (229)
369 KOG1802|consensus 96.4 0.014 3.1E-07 70.1 10.1 84 165-294 402-485 (935)
370 smart00492 HELICc3 helicase su 95.9 0.036 7.9E-07 56.3 9.1 51 572-622 25-78 (141)
371 PRK10875 recD exonuclease V su 95.8 0.074 1.6E-06 67.4 13.2 143 792-996 154-299 (615)
372 PF14617 CMS1: U3-containing 9 95.7 0.021 4.5E-07 63.3 6.9 88 873-964 123-212 (252)
373 smart00491 HELICc2 helicase su 95.6 0.042 9E-07 56.0 8.2 43 580-622 30-79 (142)
374 TIGR01448 recD_rel helicase, p 95.6 0.08 1.7E-06 69.0 12.5 35 786-822 320-354 (720)
375 TIGR01447 recD exodeoxyribonuc 95.5 0.087 1.9E-06 66.7 12.4 143 793-996 148-293 (586)
376 KOG1015|consensus 95.5 0.03 6.5E-07 69.8 7.8 117 1064-1180 1126-1271(1567)
377 smart00492 HELICc3 helicase su 95.5 0.057 1.2E-06 54.9 8.7 50 1106-1155 26-78 (141)
378 TIGR01448 recD_rel helicase, p 95.5 0.12 2.6E-06 67.5 13.7 36 169-206 320-355 (720)
379 PF13401 AAA_22: AAA domain; P 95.5 0.038 8.3E-07 55.6 7.4 20 805-824 3-22 (131)
380 PF13401 AAA_22: AAA domain; P 95.3 0.068 1.5E-06 53.8 8.7 19 188-206 3-21 (131)
381 PF14617 CMS1: U3-containing 9 95.3 0.034 7.4E-07 61.6 6.6 87 257-347 124-212 (252)
382 smart00491 HELICc2 helicase su 95.1 0.079 1.7E-06 54.0 8.1 65 1091-1155 5-79 (142)
383 TIGR02768 TraA_Ti Ti-type conj 95.1 0.2 4.4E-06 65.6 13.9 33 790-822 352-384 (744)
384 COG3421 Uncharacterized protei 95.0 0.021 4.5E-07 68.2 4.2 43 307-349 79-125 (812)
385 KOG0701|consensus 95.0 0.016 3.5E-07 78.3 3.5 93 546-638 294-398 (1606)
386 TIGR02768 TraA_Ti Ti-type conj 94.9 0.28 6.1E-06 64.3 14.7 47 158-205 338-384 (744)
387 TIGR01447 recD exodeoxyribonuc 94.8 0.2 4.3E-06 63.5 12.5 70 175-282 147-216 (586)
388 PF00580 UvrD-helicase: UvrD/R 94.8 0.057 1.2E-06 63.7 7.5 69 791-900 1-69 (315)
389 PRK08181 transposase; Validate 94.8 0.19 4E-06 57.2 11.0 22 803-824 103-124 (269)
390 PF00580 UvrD-helicase: UvrD/R 94.8 0.064 1.4E-06 63.3 7.7 125 174-346 1-125 (315)
391 PRK10875 recD exonuclease V su 94.8 0.26 5.6E-06 62.6 13.3 69 175-282 154-222 (615)
392 PRK12723 flagellar biosynthesi 94.8 0.21 4.6E-06 59.6 11.8 48 952-1002 253-300 (388)
393 COG3421 Uncharacterized protei 94.6 0.032 6.9E-07 66.6 4.2 76 924-1001 79-167 (812)
394 PRK06526 transposase; Provisio 94.4 0.12 2.6E-06 58.4 8.3 23 803-825 95-117 (254)
395 COG1875 NYN ribonuclease and A 94.3 0.21 4.5E-06 57.0 9.6 48 786-833 224-272 (436)
396 PRK08181 transposase; Validate 94.3 0.27 5.9E-06 55.8 10.8 23 186-208 103-125 (269)
397 PRK13889 conjugal transfer rel 94.3 0.44 9.6E-06 63.5 14.2 36 169-205 343-378 (988)
398 PRK13889 conjugal transfer rel 94.3 0.22 4.8E-06 66.2 11.4 36 786-822 343-378 (988)
399 KOG1805|consensus 94.2 0.17 3.6E-06 64.3 9.6 138 773-967 656-810 (1100)
400 COG1875 NYN ribonuclease and A 94.1 0.15 3.3E-06 58.1 8.1 47 169-216 224-272 (436)
401 cd00009 AAA The AAA+ (ATPases 94.1 0.26 5.7E-06 50.2 9.5 17 806-822 19-35 (151)
402 PRK04296 thymidine kinase; Pro 94.0 0.074 1.6E-06 57.5 5.4 19 808-826 4-22 (190)
403 KOG1805|consensus 94.0 0.21 4.5E-06 63.5 9.7 137 156-349 656-809 (1100)
404 PRK13826 Dtr system oriT relax 93.9 0.57 1.2E-05 62.8 14.2 48 774-822 366-413 (1102)
405 PRK06526 transposase; Provisio 93.8 0.21 4.5E-06 56.5 8.6 23 186-208 95-117 (254)
406 PF05970 PIF1: PIF1-like helic 93.8 0.13 2.9E-06 61.6 7.5 32 791-822 2-38 (364)
407 PRK13826 Dtr system oriT relax 93.7 0.81 1.8E-05 61.4 14.9 49 156-205 365-413 (1102)
408 PRK13894 conjugal transfer ATP 93.3 0.16 3.5E-06 59.2 6.9 42 162-205 123-164 (319)
409 PRK12723 flagellar biosynthesi 93.3 0.8 1.7E-05 54.8 12.8 20 189-208 174-193 (388)
410 PRK13894 conjugal transfer ATP 93.1 0.18 3.9E-06 58.8 6.9 48 780-830 124-171 (319)
411 PRK07952 DNA replication prote 93.0 0.99 2.1E-05 50.5 12.3 19 190-208 100-118 (244)
412 PRK14974 cell division protein 93.0 0.83 1.8E-05 53.6 12.2 47 953-1004 222-269 (336)
413 PRK12377 putative replication 92.9 0.67 1.4E-05 52.0 10.8 18 806-823 101-118 (248)
414 KOG0701|consensus 92.9 0.06 1.3E-06 73.1 2.8 94 1079-1172 294-399 (1606)
415 PRK07952 DNA replication prote 92.8 0.92 2E-05 50.8 11.6 48 952-1003 161-209 (244)
416 PF05970 PIF1: PIF1-like helic 92.7 0.2 4.4E-06 60.1 6.7 33 174-206 2-39 (364)
417 PF13871 Helicase_C_4: Helicas 92.5 0.29 6.3E-06 55.1 7.1 64 1118-1181 52-124 (278)
418 PRK04296 thymidine kinase; Pro 92.5 0.13 2.9E-06 55.4 4.4 19 190-208 3-21 (190)
419 PRK06835 DNA replication prote 92.3 0.75 1.6E-05 54.0 10.5 19 805-823 182-200 (329)
420 cd00009 AAA The AAA+ (ATPases 92.3 0.45 9.8E-06 48.4 8.0 18 189-206 19-36 (151)
421 cd01120 RecA-like_NTPases RecA 92.2 1.1 2.5E-05 46.5 11.1 17 809-825 2-18 (165)
422 PRK06835 DNA replication prote 92.2 0.71 1.5E-05 54.2 10.1 20 188-207 182-201 (329)
423 PRK13833 conjugal transfer pro 92.1 0.35 7.5E-06 56.3 7.4 40 164-205 121-160 (323)
424 PRK12377 putative replication 92.0 1.1 2.4E-05 50.3 11.0 20 189-208 101-120 (248)
425 PRK14722 flhF flagellar biosyn 92.0 0.29 6.2E-06 58.0 6.6 23 805-827 136-158 (374)
426 COG1484 DnaC DNA replication p 91.9 0.56 1.2E-05 53.1 8.7 22 804-825 103-124 (254)
427 PRK08727 hypothetical protein; 91.9 0.57 1.2E-05 52.5 8.6 17 807-823 42-58 (233)
428 TIGR02782 TrbB_P P-type conjug 91.8 0.46 9.9E-06 55.2 8.0 43 162-206 107-149 (299)
429 PRK13833 conjugal transfer pro 91.8 0.4 8.6E-06 55.8 7.5 46 782-830 122-167 (323)
430 PRK00149 dnaA chromosomal repl 91.8 0.73 1.6E-05 57.2 10.3 46 953-1002 211-257 (450)
431 PRK14974 cell division protein 91.7 1.5 3.2E-05 51.5 12.0 18 190-207 141-158 (336)
432 PRK08727 hypothetical protein; 91.6 0.85 1.8E-05 51.1 9.6 18 190-207 42-59 (233)
433 PF03354 Terminase_1: Phage Te 91.6 0.3 6.4E-06 61.1 6.6 72 793-902 1-80 (477)
434 PRK11889 flhF flagellar biosyn 91.5 1.9 4.1E-05 51.0 12.4 22 189-210 241-262 (436)
435 cd01122 GP4d_helicase GP4d_hel 91.4 0.6 1.3E-05 53.8 8.5 47 778-825 3-49 (271)
436 smart00382 AAA ATPases associa 91.4 0.17 3.7E-06 51.1 3.6 19 806-824 2-20 (148)
437 COG1484 DnaC DNA replication p 91.1 0.88 1.9E-05 51.5 9.2 22 188-209 104-125 (254)
438 PRK08116 hypothetical protein; 91.1 1.9 4.2E-05 49.2 12.0 24 190-214 115-138 (268)
439 PRK06893 DNA replication initi 91.1 0.62 1.3E-05 52.0 7.9 45 953-1001 91-136 (229)
440 PF00308 Bac_DnaA: Bacterial d 91.1 0.8 1.7E-05 50.7 8.6 48 952-1003 96-144 (219)
441 TIGR01075 uvrD DNA helicase II 91.0 0.56 1.2E-05 61.9 8.7 113 172-348 3-115 (715)
442 TIGR02782 TrbB_P P-type conjug 91.0 0.65 1.4E-05 53.9 8.2 41 780-822 108-148 (299)
443 PRK06893 DNA replication initi 90.9 0.82 1.8E-05 51.1 8.7 18 190-207 40-57 (229)
444 PRK14087 dnaA chromosomal repl 90.9 1 2.2E-05 55.5 10.2 46 952-1001 205-251 (450)
445 PRK11054 helD DNA helicase IV; 90.9 0.77 1.7E-05 59.5 9.4 88 170-322 193-280 (684)
446 PRK11054 helD DNA helicase IV; 90.9 0.74 1.6E-05 59.6 9.2 71 789-900 195-265 (684)
447 PRK14722 flhF flagellar biosyn 90.8 0.5 1.1E-05 56.0 7.0 23 188-210 136-158 (374)
448 smart00382 AAA ATPases associa 90.7 0.27 5.8E-06 49.7 4.2 20 189-208 2-21 (148)
449 TIGR02881 spore_V_K stage V sp 90.6 1.1 2.4E-05 51.1 9.6 18 807-824 43-60 (261)
450 PRK08116 hypothetical protein; 90.6 2.2 4.7E-05 48.8 11.8 24 807-831 115-138 (268)
451 cd01120 RecA-like_NTPases RecA 90.6 2.9 6.4E-05 43.4 12.2 18 192-209 2-19 (165)
452 COG1419 FlhF Flagellar GTP-bin 90.6 0.78 1.7E-05 54.0 8.1 18 806-823 203-220 (407)
453 PTZ00112 origin recognition co 90.5 4.4 9.6E-05 52.3 14.9 27 953-980 869-895 (1164)
454 PF00004 AAA: ATPase family as 90.4 0.52 1.1E-05 47.2 5.9 16 954-969 59-74 (132)
455 TIGR00362 DnaA chromosomal rep 90.3 1.2 2.6E-05 54.5 10.1 17 807-823 137-153 (405)
456 PF00308 Bac_DnaA: Bacterial d 90.2 1.5 3.3E-05 48.4 9.8 15 191-205 36-50 (219)
457 PF03354 Terminase_1: Phage Te 90.2 0.43 9.4E-06 59.6 6.2 71 176-285 1-80 (477)
458 PRK00149 dnaA chromosomal repl 90.2 1.6 3.5E-05 54.2 11.2 17 190-206 149-165 (450)
459 COG2805 PilT Tfp pilus assembl 90.1 0.73 1.6E-05 51.5 7.0 48 765-832 103-150 (353)
460 PF13871 Helicase_C_4: Helicas 90.1 0.79 1.7E-05 51.7 7.5 66 585-650 52-126 (278)
461 COG3973 Superfamily I DNA and 90.1 1.2 2.7E-05 54.1 9.3 106 155-323 186-299 (747)
462 TIGR01075 uvrD DNA helicase II 90.0 0.76 1.6E-05 60.7 8.6 71 789-900 3-73 (715)
463 cd01124 KaiC KaiC is a circadi 90.0 1.8 3.9E-05 46.5 10.2 21 809-829 2-22 (187)
464 PRK11331 5-methylcytosine-spec 89.9 1.1 2.3E-05 54.2 8.7 33 174-207 180-212 (459)
465 PF05621 TniB: Bacterial TniB 89.9 0.61 1.3E-05 52.9 6.3 29 953-981 145-175 (302)
466 PRK06921 hypothetical protein; 89.8 1.4 2.9E-05 50.4 9.3 19 805-823 116-134 (266)
467 PRK11773 uvrD DNA-dependent he 89.6 0.76 1.6E-05 60.6 8.1 111 173-347 9-119 (721)
468 PRK10919 ATP-dependent DNA hel 89.3 0.65 1.4E-05 60.5 7.0 70 790-900 2-71 (672)
469 PF05621 TniB: Bacterial TniB 89.3 0.83 1.8E-05 51.9 6.8 16 190-205 62-77 (302)
470 COG1419 FlhF Flagellar GTP-bin 89.2 0.78 1.7E-05 54.0 6.8 17 189-205 203-219 (407)
471 PF05127 Helicase_RecD: Helica 89.2 0.12 2.6E-06 54.2 0.2 85 260-361 27-111 (177)
472 TIGR03420 DnaA_homol_Hda DnaA 89.2 1.4 3E-05 49.1 8.7 20 805-824 37-56 (226)
473 PRK14086 dnaA chromosomal repl 89.1 1.3 2.8E-05 55.6 9.0 47 953-1003 377-424 (617)
474 COG1444 Predicted P-loop ATPas 89.1 1.8 4E-05 55.2 10.3 142 163-363 204-346 (758)
475 PRK10919 ATP-dependent DNA hel 89.1 0.74 1.6E-05 60.0 7.3 112 173-347 2-113 (672)
476 PRK11889 flhF flagellar biosyn 89.1 2.9 6.3E-05 49.5 11.2 22 806-827 241-262 (436)
477 TIGR02881 spore_V_K stage V sp 89.0 1.8 3.8E-05 49.5 9.6 20 189-208 42-61 (261)
478 cd01130 VirB11-like_ATPase Typ 89.0 0.43 9.3E-06 51.4 4.3 39 166-206 4-42 (186)
479 PRK05642 DNA replication initi 88.9 1.4 3.1E-05 49.2 8.6 43 953-1000 97-140 (234)
480 PTZ00112 origin recognition co 88.9 3.4 7.4E-05 53.3 12.3 16 191-206 782-798 (1164)
481 TIGR00362 DnaA chromosomal rep 88.8 2.3 5.1E-05 52.0 11.1 17 190-206 137-153 (405)
482 COG2256 MGS1 ATPase related to 88.8 2.1 4.5E-05 50.0 9.6 19 807-825 49-67 (436)
483 PF00448 SRP54: SRP54-type pro 88.5 2.5 5.4E-05 45.8 9.7 17 191-207 3-19 (196)
484 PRK08084 DNA replication initi 88.2 1.8 3.9E-05 48.5 8.7 18 806-823 45-62 (235)
485 KOG1131|consensus 88.1 1.8 3.8E-05 51.5 8.5 99 170-273 13-117 (755)
486 COG1444 Predicted P-loop ATPas 88.1 2.4 5.3E-05 54.1 10.4 150 783-1000 207-357 (758)
487 PRK11331 5-methylcytosine-spec 88.0 1.4 3.1E-05 53.1 8.1 23 802-824 190-212 (459)
488 PF00448 SRP54: SRP54-type pro 88.0 3 6.5E-05 45.2 9.9 46 954-1004 84-130 (196)
489 PRK14088 dnaA chromosomal repl 87.9 2.9 6.2E-05 51.6 10.9 47 953-1003 194-241 (440)
490 PRK05642 DNA replication initi 87.9 2.6 5.6E-05 47.2 9.7 16 190-205 46-61 (234)
491 PHA02533 17 large terminase pr 87.9 2.5 5.4E-05 53.1 10.4 71 173-284 59-129 (534)
492 COG0466 Lon ATP-dependent Lon 87.7 1.1 2.5E-05 55.8 7.0 67 908-982 380-446 (782)
493 PRK14087 dnaA chromosomal repl 87.6 2.8 6.1E-05 51.7 10.6 16 190-205 142-157 (450)
494 COG4962 CpaF Flp pilus assembl 87.6 0.79 1.7E-05 52.6 5.3 72 157-271 141-212 (355)
495 PRK06995 flhF flagellar biosyn 87.5 2.8 6E-05 51.6 10.2 21 805-825 255-275 (484)
496 PRK08903 DnaA regulatory inact 87.3 2.1 4.6E-05 47.7 8.6 19 805-823 41-59 (227)
497 COG2256 MGS1 ATPase related to 87.2 3.2 7E-05 48.5 9.8 20 190-209 49-68 (436)
498 PRK06995 flhF flagellar biosyn 87.1 2.8 6E-05 51.6 10.0 22 189-210 256-277 (484)
499 KOG0742|consensus 87.1 0.69 1.5E-05 53.2 4.4 47 770-822 354-400 (630)
500 PHA02533 17 large terminase pr 87.0 3.5 7.7E-05 51.8 11.1 72 790-902 59-130 (534)
No 1
>KOG0347|consensus
Probab=100.00 E-value=2.5e-77 Score=667.26 Aligned_cols=465 Identities=47% Similarity=0.788 Sum_probs=411.7
Q ss_pred hhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 762 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
....+++.|.+|+++..++++|..+||..|||||..+||.++.+..|+++.|.|||||||||.+||++.++......
T Consensus 175 ~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s--- 251 (731)
T KOG0347|consen 175 SSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDS--- 251 (731)
T ss_pred ccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchH---
Confidence 34567888999999999999999999999999999999998877799999999999999999999999776532100
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~ 921 (1493)
.+++. .......+.+||++||||||.|+.+++..++...++++..++||.+...|.+
T Consensus 252 ---------------~e~~~--------~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqR 308 (731)
T KOG0347|consen 252 ---------------QELSN--------TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQR 308 (731)
T ss_pred ---------------hhhhh--------HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHH
Confidence 00100 1123344479999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 922 ~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
.|+..|+|||+||||||.++..+..++..|.++++||+||||+|++.|||..+..++..|........+|+++||||++-
T Consensus 309 lL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~ 388 (731)
T KOG0347|consen 309 LLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTL 388 (731)
T ss_pred HHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeeh
Confidence 99999999999999999999998888889999999999999999999999999999999986666778999999999985
Q ss_pred chHhHHhhhccCcCcccccCCCchhHHHHhHhccCC-CcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcE
Q psy16310 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 1080 (1493)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 1080 (1493)
.....+....... ..-......+..++..+++.. |.++++.....+...+.+..+.|+..+|..+|++|+.++||++
T Consensus 389 ~~~~~~~~~~k~~--~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrT 466 (731)
T KOG0347|consen 389 VLQQPLSSSRKKK--DKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRT 466 (731)
T ss_pred hhcChhHHhhhcc--chhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCce
Confidence 4443332111100 111223346777788888776 5899999999999999999999999999999999999999999
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhH
Q psy16310 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160 (1493)
Q Consensus 1081 IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~ 1160 (1493)
|||||++.++.+|+-+|..+++....+|+.|.|.+|.+.+++|++....|||||||+|||+|||+|.|||||.+|++.+.
T Consensus 467 lVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtsei 546 (731)
T KOG0347|consen 467 LVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEI 546 (731)
T ss_pred EEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh-hccCCch
Q psy16310 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKI-KKNRPDN 1239 (1493)
Q Consensus 1161 yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~ 1239 (1493)
|+||.|||+|++..|.+++||.|.++..|.++++.+.+..+++.||+..+++..++.|+.+|.+|+.++.+. .....++
T Consensus 547 YVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~~e~k~~~v~~~~s 626 (731)
T KOG0347|consen 547 YVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDKLEIKSKRVRKEES 626 (731)
T ss_pred eEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999554 3457889
Q ss_pred HHHHHhhhhhhcccc
Q psy16310 1240 WLHRSGRTARANNEG 1254 (1493)
Q Consensus 1240 ~l~~~~~~~~~~~~~ 1254 (1493)
|+..+|..++...++
T Consensus 627 WlkkaA~el~id~d~ 641 (731)
T KOG0347|consen 627 WLKKAADELGIDVDE 641 (731)
T ss_pred HHHHHHHHhCCcccc
Confidence 999999987755444
No 2
>KOG0330|consensus
Probab=100.00 E-value=4.7e-72 Score=603.26 Aligned_cols=392 Identities=37% Similarity=0.626 Sum_probs=357.6
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
....+|.+|++++.+++++...||..||+||.++||.++ +|+|+|+.|+||||||.+|++||+++++..
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~---------- 126 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQE---------- 126 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcC----------
Confidence 445689999999999999999999999999999999655 889999999999999999999999999863
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 924 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 924 (1493)
...+++|||+||||||.||.+.|..++...++++.++.||.....|...+.
T Consensus 127 -----------------------------p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~ 177 (476)
T KOG0330|consen 127 -----------------------------PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLS 177 (476)
T ss_pred -----------------------------CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhh
Confidence 233789999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
+.|+|+|||||+||+++..... ..+.++++||+||||+++++.|.+.+..|+..+ |..+|+++||||||..+.
T Consensus 178 kkPhilVaTPGrL~dhl~~Tkg--f~le~lk~LVlDEADrlLd~dF~~~ld~ILk~i-----p~erqt~LfsATMt~kv~ 250 (476)
T KOG0330|consen 178 KKPHILVATPGRLWDHLENTKG--FSLEQLKFLVLDEADRLLDMDFEEELDYILKVI-----PRERQTFLFSATMTKKVR 250 (476)
T ss_pred cCCCEEEeCcHHHHHHHHhccC--ccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhc-----CccceEEEEEeecchhhH
Confidence 9999999999999999984322 346789999999999999999999999999998 488999999999997776
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVF 1083 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF 1083 (1493)
... ...+..|..+.....+.+...+.+.|...+...|..+|++++... +..+|||
T Consensus 251 kL~------------------------rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF 306 (476)
T KOG0330|consen 251 KLQ------------------------RASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVF 306 (476)
T ss_pred HHH------------------------hhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEE
Confidence 543 235667888888888899999999999999999999999999876 5679999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHH
Q psy16310 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163 (1493)
Q Consensus 1084 ~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiq 1163 (1493)
|+|+..+++++-.|+.+|+.+..+||+|+|..|...++.|++|..+|||||||++||+|+|.|++|||||+|.+..+|||
T Consensus 307 ~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIH 386 (476)
T KOG0330|consen 307 CNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIH 386 (476)
T ss_pred EeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16310 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229 (1493)
Q Consensus 1164 r~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~ 1229 (1493)
|+||+||+|+.|.+|.|++..|+..+.+|+..++++ ++.++++......+.+|+..|.+....+
T Consensus 387 RvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkk--l~~~~~~~~~~~~l~erv~eA~~~a~m~ 450 (476)
T KOG0330|consen 387 RVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKK--LPEYKVDKNEVMSLNERVAEAQKEAGME 450 (476)
T ss_pred HcccccccCCCcceEEEEehhhhHHHHHHHHHHhcC--CCccCcchHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999886 4567778877888888887776544433
No 3
>KOG0330|consensus
Probab=100.00 E-value=3.5e-67 Score=565.59 Aligned_cols=360 Identities=38% Similarity=0.639 Sum_probs=311.5
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
....+|.++++.+.+++++...||+.||+||+++||.+ ++|+|+|+.|.||||||.+|+|||+++|+..
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~-L~g~dvIglAeTGSGKT~afaLPIl~~LL~~---------- 126 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVA-LGGRDVIGLAETGSGKTGAFALPILQRLLQE---------- 126 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchh-hCCCcEEEEeccCCCchhhhHHHHHHHHHcC----------
Confidence 34567999999999999999999999999999999954 5889999999999999999999999999752
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
+..+++|||+||||||.||...|..++...|++++++.||++...+...+.
T Consensus 127 -----------------------------p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~ 177 (476)
T KOG0330|consen 127 -----------------------------PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLS 177 (476)
T ss_pred -----------------------------CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhh
Confidence 234789999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
+.|+|||||||+|++++.+... ..|.++++||+||||+++++.|.+.+.+|++.+
T Consensus 178 kkPhilVaTPGrL~dhl~~Tkg--f~le~lk~LVlDEADrlLd~dF~~~ld~ILk~i----------------------- 232 (476)
T KOG0330|consen 178 KKPHILVATPGRLWDHLENTKG--FSLEQLKFLVLDEADRLLDMDFEEELDYILKVI----------------------- 232 (476)
T ss_pred cCCCEEEeCcHHHHHHHHhccC--ccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhc-----------------------
Confidence 9999999999999999985432 235589999999999999999999999999988
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
+..+|+++||||||..+.++.+.. ...+..+....++.....+.+.
T Consensus 233 ----------p~erqt~LfsATMt~kv~kL~ras------------------------l~~p~~v~~s~ky~tv~~lkQ~ 278 (476)
T KOG0330|consen 233 ----------PRERQTFLFSATMTKKVRKLQRAS------------------------LDNPVKVAVSSKYQTVDHLKQT 278 (476)
T ss_pred ----------CccceEEEEEeecchhhHHHHhhc------------------------cCCCeEEeccchhcchHHhhhh
Confidence 455899999999999887766422 2233333444444444444444
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCc
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGR 546 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~ 546 (1493)
+..++.. .|..+|.+++.+. +..
T Consensus 279 ylfv~~k--------------------------------------------------------~K~~yLV~ll~e~~g~s 302 (476)
T KOG0330|consen 279 YLFVPGK--------------------------------------------------------DKDTYLVYLLNELAGNS 302 (476)
T ss_pred eEecccc--------------------------------------------------------ccchhHHHHHHhhcCCc
Confidence 4444333 3444555555544 468
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChH
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~ 626 (1493)
+||||+++.++.+++-+|+.+|+.+..+||.|++..|...++.|+.|...|||||||++||+|||.|++|||||+|.+..
T Consensus 303 ~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~sk 382 (476)
T KOG0330|consen 303 VIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSK 382 (476)
T ss_pred EEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
+||||+|||||+|++|.++.|++.-|+..+.+++..
T Consensus 383 DYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~ 418 (476)
T KOG0330|consen 383 DYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHA 418 (476)
T ss_pred HHHHHcccccccCCCcceEEEEehhhhHHHHHHHHH
Confidence 999999999999999999999999999888887543
No 4
>KOG0338|consensus
Probab=100.00 E-value=6.8e-67 Score=578.55 Aligned_cols=362 Identities=36% Similarity=0.575 Sum_probs=320.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..+|.+++|+.+|++++..+||..|||||..+||.++ -|+|+++||-||||||.||++|+|++++...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPval-lgkDIca~A~TGsGKTAAF~lPiLERLlYrP----------- 247 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVAL-LGKDICACAATGSGKTAAFALPILERLLYRP----------- 247 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHh-hcchhhheecccCCchhhhHHHHHHHHhcCc-----------
Confidence 4579999999999999999999999999999999766 5789999999999999999999999998642
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
......++|||||||||+.|++.+.++++.+..+.+++++||.+...|...|+..
T Consensus 248 -------------------------k~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~ 302 (691)
T KOG0338|consen 248 -------------------------KKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSR 302 (691)
T ss_pred -------------------------ccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhC
Confidence 2345568999999999999999999999999999999999999999999999999
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
|||+|+|||||.|+|.+... ..+.++.+||+||||+|++.||..++..|+..+ +.++|++||||||+..+..+
T Consensus 303 PDIVIATPGRlIDHlrNs~s--f~ldsiEVLvlDEADRMLeegFademnEii~lc-----pk~RQTmLFSATMteeVkdL 375 (691)
T KOG0338|consen 303 PDIVIATPGRLIDHLRNSPS--FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLC-----PKNRQTMLFSATMTEEVKDL 375 (691)
T ss_pred CCEEEecchhHHHHhccCCC--ccccceeEEEechHHHHHHHHHHHHHHHHHHhc-----cccccceeehhhhHHHHHHH
Confidence 99999999999999986542 357789999999999999999999999999988 58899999999999888876
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec---ccchhhHHHHHHHhC-CCcEEE
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK---HDEKDSYLYYFILQH-PGRTLV 1082 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~k~~~l~~~l~~~-~~~~IV 1082 (1493)
+.+ .+..|..+-+.+.......+.+-++... ...+...+..++... ..++||
T Consensus 376 ~sl------------------------SL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~iv 431 (691)
T KOG0338|consen 376 ASL------------------------SLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIV 431 (691)
T ss_pred HHh------------------------hcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEE
Confidence 643 3445555555555555555655555333 234555555555543 678999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHH
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yi 1162 (1493)
|+.|++.|+++.-+|-.+|+.+.-+||.++|.+|...++.|+.++++||||||+++|||||++|.+||||++|.+++.|+
T Consensus 432 Fv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~ 511 (691)
T KOG0338|consen 432 FVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYL 511 (691)
T ss_pred EEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhc
Q psy16310 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196 (1493)
Q Consensus 1163 qr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~ 1196 (1493)
||+|||+|+|+.|.+++|+..+|...++.+.+..
T Consensus 512 HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 512 HRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred HHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999998874
No 5
>KOG0347|consensus
Probab=100.00 E-value=1.8e-67 Score=588.35 Aligned_cols=403 Identities=50% Similarity=0.796 Sum_probs=340.3
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 147 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
...++.|..|+|+..++++|..+||.+||+||+.+||.++.+..||+..|.|||||||||.+|+++.+........
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~---- 252 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ---- 252 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh----
Confidence 3457789999999999999999999999999999999999877999999999999999999999997754221110
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
.+++ .......+.+||++||||||.|+.+++..+...+++++..++||.....|.+.+
T Consensus 253 -----------e~~~-----------~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL 310 (731)
T KOG0347|consen 253 -----------ELSN-----------TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLL 310 (731)
T ss_pred -----------hhhh-----------HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHH
Confidence 0000 112233346999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
...++|+|+||||||.++..++..+..|.++.+||+||||+|++.|+++.+..+++.++...
T Consensus 311 ~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~------------------ 372 (731)
T KOG0347|consen 311 NQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQ------------------ 372 (731)
T ss_pred hcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhh------------------
Confidence 99999999999999999998888888899999999999999999999999999999987321
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
....+|+++||||++-....-+....... ..
T Consensus 373 ----------~~~qrQTlVFSATlt~~~~~~~~~~~k~~-----------------------~k---------------- 403 (731)
T KOG0347|consen 373 ----------KNRQRQTLVFSATLTLVLQQPLSSSRKKK-----------------------DK---------------- 403 (731)
T ss_pred ----------cccccceEEEEEEeehhhcChhHHhhhcc-----------------------ch----------------
Confidence 24567999999999854332221100000 00
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCc
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 546 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 546 (1493)
.+ .....+...+..+-....|+++++.........+.+..+.|...+|..+|++||..+||+
T Consensus 404 ---------~~---------~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGr 465 (731)
T KOG0347|consen 404 ---------ED---------ELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGR 465 (731)
T ss_pred ---------hh---------hhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCc
Confidence 00 000001111222223445688888888888888999999999999999999999999999
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChH
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~ 626 (1493)
+|||||+...+.+|+-+|+.+++..+.+|+.|.|.+|.+.+++|++....||||||||+||||||+|.|||||.+|.+..
T Consensus 466 TlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtse 545 (731)
T KOG0347|consen 466 TLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSE 545 (731)
T ss_pred eEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
-|+||.|||||++..|.+++|+.|.|+..+.++-
T Consensus 546 iYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ 579 (731)
T KOG0347|consen 546 IYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLC 579 (731)
T ss_pred eeEecccccccccCCCeEEEEeChHHhHHHHHHH
Confidence 9999999999999999999999999988777764
No 6
>KOG0331|consensus
Probab=100.00 E-value=1.9e-65 Score=595.31 Aligned_cols=364 Identities=33% Similarity=0.567 Sum_probs=322.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
.|.+++|++.+..+|+..||+.|||||.++||. +..|+|+++.|.|||||||+|++|++.++.....
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~-~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~------------ 158 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPI-ALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG------------ 158 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccce-eccCCceEEEeccCCcchhhhhhHHHHHHHhccc------------
Confidence 799999999999999999999999999999995 5588999999999999999999999999865211
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
......++++|||+||||||.|+.+.+..++..+.+++.|++||.+...|.+.+.++++
T Consensus 159 ---------------------~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvd 217 (519)
T KOG0331|consen 159 ---------------------KLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVD 217 (519)
T ss_pred ---------------------cccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCc
Confidence 12345688999999999999999999999999999999999999999999999999999
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+|||||||.+++..+.. .|+++.++|+||||+|+++||.++++.|+..++ ++.+|++++|||+|.++..+..
T Consensus 218 iviaTPGRl~d~le~g~~---~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~----~~~rQtlm~saTwp~~v~~lA~ 290 (519)
T KOG0331|consen 218 VVIATPGRLIDLLEEGSL---NLSRVTYLVLDEADRMLDMGFEPQIRKILSQIP----RPDRQTLMFSATWPKEVRQLAE 290 (519)
T ss_pred EEEeCChHHHHHHHcCCc---cccceeEEEeccHHhhhccccHHHHHHHHHhcC----CCcccEEEEeeeccHHHHHHHH
Confidence 999999999999998875 456899999999999999999999999999985 3456999999999998877653
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCCCcEEeccc--cccccccceeeEEEecccchhhHHHHHHHhC----CCcEEE
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE--KIGITKTLTESKILCKHDEKDSYLYYFILQH----PGRTLV 1082 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~----~~~~IV 1082 (1493)
.+.. ++..+.+.. .......+.+....|....|...+..+|... .+++||
T Consensus 291 ~fl~------------------------~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvII 346 (519)
T KOG0331|consen 291 DFLN------------------------NPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVII 346 (519)
T ss_pred HHhc------------------------CceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEE
Confidence 3221 333333332 2345566777777888888888888777654 679999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHH
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yi 1162 (1493)
||+|+..|+.|+..|...++++..+||+++|.+|..+++.|++|+..|||||||++||||||+|++|||||+|.+.++|+
T Consensus 347 Fc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYV 426 (519)
T KOG0331|consen 347 FCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYV 426 (519)
T ss_pred EecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcc
Q psy16310 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197 (1493)
Q Consensus 1163 qr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~ 1197 (1493)
||+|||||+|+.|.+++|++..+....+.+.+.+.
T Consensus 427 HRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~ 461 (519)
T KOG0331|consen 427 HRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLR 461 (519)
T ss_pred hhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887777766653
No 7
>KOG0338|consensus
Probab=100.00 E-value=1.4e-65 Score=568.22 Aligned_cols=363 Identities=36% Similarity=0.563 Sum_probs=305.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|.+++|+..+++++..+||..|||||..+||.++. |+|++.||.||||||.+|+||+|.+++...
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvall-gkDIca~A~TGsGKTAAF~lPiLERLlYrP------------ 247 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALL-GKDICACAATGSGKTAAFALPILERLLYRP------------ 247 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhh-cchhhheecccCCchhhhHHHHHHHHhcCc------------
Confidence 4788999999999999999999999999999997774 689999999999999999999999987532
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
......+||||+|||+|+.|++.+++.++++..+.+++.+||.+...|...|...|
T Consensus 248 ------------------------k~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~P 303 (691)
T KOG0338|consen 248 ------------------------KKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRP 303 (691)
T ss_pred ------------------------ccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCC
Confidence 22345689999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
||+|+|||||+++|.+... ..|.+|.+||+||||+||+.+|.+++..|+..+
T Consensus 304 DIVIATPGRlIDHlrNs~s--f~ldsiEVLvlDEADRMLeegFademnEii~lc-------------------------- 355 (691)
T KOG0338|consen 304 DIVIATPGRLIDHLRNSPS--FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLC-------------------------- 355 (691)
T ss_pred CEEEecchhHHHHhccCCC--ccccceeEEEechHHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 9999999999999986542 236799999999999999999999999999877
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
+..+|+++|||||+..+..++++....+....+... ....+.+.+.++-
T Consensus 356 -------pk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~------------------------~~~a~~LtQEFiR 404 (691)
T KOG0338|consen 356 -------PKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPN------------------------KDTAPKLTQEFIR 404 (691)
T ss_pred -------cccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCc------------------------cccchhhhHHHhe
Confidence 566899999999999999888765544332222211 1111111111111
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHh-hCCCcEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPGRTLV 549 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~II 549 (1493)
.+. . ....+..++..++. ....++||
T Consensus 405 IR~---------------~--------------------------------------re~dRea~l~~l~~rtf~~~~iv 431 (691)
T KOG0338|consen 405 IRP---------------K--------------------------------------REGDREAMLASLITRTFQDRTIV 431 (691)
T ss_pred ecc---------------c--------------------------------------cccccHHHHHHHHHHhcccceEE
Confidence 110 0 01112223333332 23568999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHH
Q psy16310 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yi 629 (1493)
|+.|.+.|+++.-+|..+|+.++-+||.++|.+|...++.|+++++.||||||||+|||||++|..||||++|.+...|+
T Consensus 432 Fv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~ 511 (691)
T KOG0338|consen 432 FVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYL 511 (691)
T ss_pred EEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 630 QR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
||+|||+|+|+.|++++|+..+|....+.+...
T Consensus 512 HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 512 HRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred HHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999998877766444
No 8
>KOG0340|consensus
Probab=100.00 E-value=4.1e-64 Score=535.50 Aligned_cols=389 Identities=33% Similarity=0.559 Sum_probs=339.2
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 766 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
.+..|+.|||++|+.+.|+.+|++.|||+|..|||. +..|+|+|.+|.||||||++|.+|+++++.
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpk-ILeGrdcig~AkTGsGKT~AFaLPil~rLs------------- 70 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPK-ILEGRDCIGCAKTGSGKTAAFALPILNRLS------------- 70 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHH-HhcccccccccccCCCcchhhhHHHHHhhc-------------
Confidence 356799999999999999999999999999999995 558899999999999999999999999883
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
....+..++|++||||||.|+.+.|..+++..++++.+++||++.-.|...|..
T Consensus 71 --------------------------edP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~ 124 (442)
T KOG0340|consen 71 --------------------------EDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD 124 (442)
T ss_pred --------------------------cCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc
Confidence 345677899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEECcHHHHHHHHhC-cCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 926 CPHILVATPGRLWEFIQLG-HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~-~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.|||+|+||||+.+++..+ ......+.+++++|+||||+|++..|...+..+.+.+ |.++|+++||||+++.+.
T Consensus 125 rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l-----P~~RQtLlfSATitd~i~ 199 (442)
T KOG0340|consen 125 RPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL-----PKPRQTLLFSATITDTIK 199 (442)
T ss_pred CCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC-----CCccceEEEEeehhhHHH
Confidence 9999999999999999765 3333457789999999999999999999999999887 467999999999997776
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC----CCcE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH----PGRT 1080 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~----~~~~ 1080 (1493)
....... ...............++..+.+.|+.|+...+..+++..+... .+.+
T Consensus 200 ql~~~~i----------------------~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~si 257 (442)
T KOG0340|consen 200 QLFGCPI----------------------TKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSI 257 (442)
T ss_pred HhhcCCc----------------------ccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceE
Confidence 5431100 0001223344455677889999999999999999999998754 5689
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhH
Q psy16310 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160 (1493)
Q Consensus 1081 IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~ 1160 (1493)
+||+|+...|+.|+..|+.+++.+..+||.|+|++|...+.+|+++..+|||||||++||+|||.|++|||||+|+++.+
T Consensus 258 mIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~ 337 (442)
T KOG0340|consen 258 MIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKD 337 (442)
T ss_pred EEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHH
Q psy16310 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223 (1493)
Q Consensus 1161 yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~ 1223 (1493)
|+||+||++|+|+.|.++.|+++.|+..+..++..++++. .+++........+-..+..++
T Consensus 338 yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl--~e~~~~~~~~~~~~t~V~~ak 398 (442)
T KOG0340|consen 338 YIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKL--TEYNKVQRTVELYVTQVTVAK 398 (442)
T ss_pred HHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccc--ccccccchhhheehhhHHHHH
Confidence 9999999999999999999999999999999999998864 345555443333333344444
No 9
>KOG0342|consensus
Probab=100.00 E-value=7.7e-63 Score=548.98 Aligned_cols=383 Identities=32% Similarity=0.469 Sum_probs=334.3
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 764 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
......|+++.|++..+++++++||+++|++|+.+||. +..|+|+++.|.||||||+||++|+++.+.....
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~p-ll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~------- 149 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPP-LLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKF------- 149 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCc-cCCCccceeeeccCCCceeeehhHHHHHHHhccc-------
Confidence 34445688999999999999999999999999999995 5578899999999999999999999999976542
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHH
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~ 922 (1493)
....+..+||||||||||.|++.+++.+.++. .+.+..+.||.........
T Consensus 150 ----------------------------~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~k 201 (543)
T KOG0342|consen 150 ----------------------------KPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADK 201 (543)
T ss_pred ----------------------------CCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHH
Confidence 23467889999999999999999999999998 8999999999998888888
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
+.++++|+|+|||||.|++++... ..+..++++|+||||+++++||..++..|+..+ +..+|+++||||++..
T Consensus 202 l~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~l-----pk~rqt~LFSAT~~~k 274 (543)
T KOG0342|consen 202 LVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKIL-----PKQRQTLLFSATQPSK 274 (543)
T ss_pred hhccccEEEeCCchHHhHhhcCCc--chhhccceeEeecchhhhhcccHHHHHHHHHhc-----cccceeeEeeCCCcHH
Confidence 888999999999999999987554 235567999999999999999999999999998 4789999999999988
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecc--ccccccccceeeEEEecccchhhHHHHHHHhCC--C
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT--EKIGITKTLTESKILCKHDEKDSYLYYFILQHP--G 1078 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~ 1078 (1493)
+.+....... ..+..++.. ....+...+.+.++.++...+...++.++.++. .
T Consensus 275 V~~l~~~~L~-----------------------~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~ 331 (543)
T KOG0342|consen 275 VKDLARGALK-----------------------RDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRY 331 (543)
T ss_pred HHHHHHHhhc-----------------------CCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCc
Confidence 8776533211 134444433 234567789999999999999999999998773 6
Q ss_pred cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCCh
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~ 1158 (1493)
++||||+|+..+..+++.|+...++|..+||+++|..|..+..+|++.+..|||||||+|||+|+|+|++||+||+|.++
T Consensus 332 KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~ 411 (543)
T KOG0342|consen 332 KIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDP 411 (543)
T ss_pred eEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHH
Q psy16310 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217 (1493)
Q Consensus 1159 ~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ 1217 (1493)
++||||+|||||.|+.|.+++|+.|.|..+++.+. ++.+..++..+.-...++.
T Consensus 412 ~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK-----~lpl~~~e~~~~~~~~v~~ 465 (543)
T KOG0342|consen 412 EQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK-----KLPLEEFEFPPLKPEDVQS 465 (543)
T ss_pred HHHHHHhccccccCCCceEEEEeChhHHHHHHHHh-----hCCCcccCCCCCCHHHHHH
Confidence 99999999999999999999999999999888775 4455555555544455543
No 10
>KOG0331|consensus
Probab=100.00 E-value=6.7e-63 Score=574.14 Aligned_cols=362 Identities=33% Similarity=0.568 Sum_probs=307.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
.|.+++|++.+..+|+..||+.|||||.++||. +..|+|+++.|.|||||||+|+||++.++.....
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~-~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~------------ 158 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPI-ALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG------------ 158 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccce-eccCCceEEEeccCCcchhhhhhHHHHHHHhccc------------
Confidence 688999999999999999999999999999994 5588999999999999999999999999975311
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
.....++|++|||+||||||.|+...+..++..++++..|++||.+...|...+..+++
T Consensus 159 ---------------------~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvd 217 (519)
T KOG0331|consen 159 ---------------------KLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVD 217 (519)
T ss_pred ---------------------cccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCc
Confidence 12235678999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+|||||.++|+.+... |+++.++|+||||+|++++|.++++.|+..++
T Consensus 218 iviaTPGRl~d~le~g~~~---l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~-------------------------- 268 (519)
T KOG0331|consen 218 VVIATPGRLIDLLEEGSLN---LSRVTYLVLDEADRMLDMGFEPQIRKILSQIP-------------------------- 268 (519)
T ss_pred EEEeCChHHHHHHHcCCcc---ccceeEEEeccHHhhhccccHHHHHHHHHhcC--------------------------
Confidence 9999999999999988775 45899999999999999999999999999884
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
++.+|++++|||+|..+..+..-... .+..+++....
T Consensus 269 ------~~~rQtlm~saTwp~~v~~lA~~fl~------------------------~~~~i~ig~~~------------- 305 (519)
T KOG0331|consen 269 ------RPDRQTLMFSATWPKEVRQLAEDFLN------------------------NPIQINVGNKK------------- 305 (519)
T ss_pred ------CCcccEEEEeeeccHHHHHHHHHHhc------------------------CceEEEecchh-------------
Confidence 23359999999999988776532111 11111100000
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC----CCcE
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH----PGRT 547 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~----~~~~ 547 (1493)
.......+.+....|+...|...|..+|... ++++
T Consensus 306 -----------------------------------------~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~Kv 344 (519)
T KOG0331|consen 306 -----------------------------------------ELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKV 344 (519)
T ss_pred -----------------------------------------hhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcE
Confidence 0001112233334555556666666666544 5799
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+|+..|..|+..|...++++..+||+.+|.+|..+++.|++|+..||||||||+||||||+|++|||||+|.++++
T Consensus 345 IIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEd 424 (519)
T KOG0331|consen 345 IIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVED 424 (519)
T ss_pred EEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|+||+|||||+|..|.+++|++..+......+.
T Consensus 425 YVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~ 457 (519)
T KOG0331|consen 425 YVHRIGRTGRAGKKGTAITFFTSDNAKLARELI 457 (519)
T ss_pred HHhhcCccccCCCCceEEEEEeHHHHHHHHHHH
Confidence 999999999999999999999999988766653
No 11
>KOG0343|consensus
Probab=100.00 E-value=3.7e-62 Score=545.42 Aligned_cols=384 Identities=33% Similarity=0.534 Sum_probs=335.8
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 766 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
.+..|++|+|+...+++|++.+|..||.+|..+||.+| .|+||++.|.|||||||||++|++++|+..++.+
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~------- 138 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP------- 138 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcCCCC-------
Confidence 34579999999999999999999999999999999777 7899999999999999999999999998876533
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
..|.-||||+||||||.|++.++.+.+++..+..+++.||.........+.
T Consensus 139 ----------------------------~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~- 189 (758)
T KOG0343|consen 139 ----------------------------TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS- 189 (758)
T ss_pred ----------------------------CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-
Confidence 456679999999999999999999999999999999999998776655554
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+.+|+|||||||+.+|..... ....++.+||+||||+|+++||...+..|+..+ |..+|+++||||.+..+..
T Consensus 190 ~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l-----P~~RQTLLFSATqt~svkd 262 (758)
T KOG0343|consen 190 QMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLDEADRMLDMGFKKTLNAIIENL-----PKKRQTLLFSATQTKSVKD 262 (758)
T ss_pred cCCeEEechHHHHHHhhhcCC--CCCCcceEEEeccHHHHHHHhHHHHHHHHHHhC-----ChhheeeeeecccchhHHH
Confidence 469999999999999986543 234578999999999999999999999999999 5889999999999988876
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccc--cccccccceeeEEEecccchhhHHHHHHHhC-CCcEEE
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE--KIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLV 1082 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IV 1082 (1493)
++. +.+.+|.++.+.. ...++.++.++|+.++..+|+.+|..|+..+ ..++||
T Consensus 263 LaR------------------------LsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iV 318 (758)
T KOG0343|consen 263 LAR------------------------LSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIV 318 (758)
T ss_pred HHH------------------------hhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEE
Confidence 653 4566777777663 3578889999999999999999999999988 568999
Q ss_pred EecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhH
Q psy16310 1083 FCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~ 1160 (1493)
|+.|++.+..+++.|..+ |+++..+||.|+|..|..++.+|-.....||+|||+++||+|+|.|+|||++|+|.++++
T Consensus 319 F~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~t 398 (758)
T KOG0343|consen 319 FLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDT 398 (758)
T ss_pred EEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHH
Confidence 999999999999999887 788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHH
Q psy16310 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1219 (1493)
Q Consensus 1161 yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~ 1219 (1493)
||||+||++|.+..|.++++++|+|...+...++.- .+++..+-+.+.-+..++..+
T Consensus 399 YIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k--~I~i~~i~i~~~k~~~i~~~l 455 (758)
T KOG0343|consen 399 YIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK--KIPIKEIKIDPEKLTSIRNKL 455 (758)
T ss_pred HHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc--CCCHHhhccCHHHhhhHHHHH
Confidence 999999999999999999999999955443333321 255555666665555555443
No 12
>KOG0333|consensus
Probab=100.00 E-value=3.8e-62 Score=543.64 Aligned_cols=379 Identities=31% Similarity=0.492 Sum_probs=337.6
Q ss_pred hhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 762 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
..+.++.+|++.++|.++++.+...||..|||||.++|| +..+.+|+|+.|.||||||++|++|++..+.....-.
T Consensus 239 ~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aip-l~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~--- 314 (673)
T KOG0333|consen 239 RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIP-LGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMA--- 314 (673)
T ss_pred CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhcc-chhccCCeeeEEeccCCccccchhhHHHHHHcCCCcc---
Confidence 345678999999999999999999999999999999999 5557789999999999999999999998875421100
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~ 921 (1493)
.......+++++||+|||+||+||...-.++++.+++++..++||.+.++|--
T Consensus 315 ---------------------------~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~f 367 (673)
T KOG0333|consen 315 ---------------------------RLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGF 367 (673)
T ss_pred ---------------------------hhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhh
Confidence 01134678899999999999999999999999999999999999999999988
Q ss_pred HhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCC-------------
Q psy16310 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ------------- 988 (1493)
Q Consensus 922 ~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~------------- 988 (1493)
.+..+|+|+|+|||+|.+.|.+..+ -+.++.++|+||||+|+++||.+++..++..++.....+
T Consensus 368 qls~gceiviatPgrLid~Lenr~l---vl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~ 444 (673)
T KOG0333|consen 368 QLSMGCEIVIATPGRLIDSLENRYL---VLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRK 444 (673)
T ss_pred hhhccceeeecCchHHHHHHHHHHH---HhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHh
Confidence 8899999999999999999987654 356889999999999999999999999999997643221
Q ss_pred -------CceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec
Q psy16310 989 -------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061 (1493)
Q Consensus 989 -------~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1493)
-+|+++||||+|+.+...+.. ++..|..+.+.........+.+..+.+.
T Consensus 445 ~~~~~k~yrqT~mftatm~p~verlar~------------------------ylr~pv~vtig~~gk~~~rveQ~v~m~~ 500 (673)
T KOG0333|consen 445 NFSSSKKYRQTVMFTATMPPAVERLARS------------------------YLRRPVVVTIGSAGKPTPRVEQKVEMVS 500 (673)
T ss_pred hcccccceeEEEEEecCCChHHHHHHHH------------------------HhhCCeEEEeccCCCCccchheEEEEec
Confidence 289999999999888766532 3556777777777777788899999999
Q ss_pred ccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhcc
Q psy16310 1062 HDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140 (1493)
Q Consensus 1062 ~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~G 1140 (1493)
.+++...|..++... ..++|||+|+++.|+.||..|...|+.+..|||+-+|.+|+.++..|+.|..+|||||||++||
T Consensus 501 ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRG 580 (673)
T KOG0333|consen 501 EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRG 580 (673)
T ss_pred chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccC
Confidence 999999999999877 7799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1141 iDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
||||+|.+|||||++.++++|+||||||||+|+.|.+++|+++.+...|+.+...+..
T Consensus 581 IDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~e 638 (673)
T KOG0333|consen 581 IDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRE 638 (673)
T ss_pred CCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888777666543
No 13
>KOG0345|consensus
Probab=100.00 E-value=3.1e-61 Score=531.24 Aligned_cols=357 Identities=34% Similarity=0.544 Sum_probs=313.4
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 769 EWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 769 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
.|++++ |++++++++..+||..+||+|..+|| .+..++|+++.|+||||||+||++|++..++.......
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIP-lll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~------- 76 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIP-LLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP------- 76 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhH-HHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-------
Confidence 466665 55999999999999999999999999 56688999999999999999999999999865432111
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC-CCcEEEEEEcCCCHHHHHHHhc-
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY-TPVKVACVVGGMSTEKQLRILN- 924 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~-~~~~v~~~~gg~~~~~~~~~l~- 924 (1493)
.....+|||+||||||.||.+++..+..+ .++++.+++||.+.......+.
T Consensus 77 ---------------------------~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fke 129 (567)
T KOG0345|consen 77 ---------------------------PGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKE 129 (567)
T ss_pred ---------------------------ccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHH
Confidence 11357999999999999999999998877 6799999999999888776554
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.++.|+|||||||.+++++....++ +.++.+||+||||+++++||...+..|+..| |..|.+-+||||....+.
T Consensus 130 e~~nIlVgTPGRL~di~~~~~~~l~-~rsLe~LVLDEADrLldmgFe~~~n~ILs~L-----PKQRRTGLFSATq~~~v~ 203 (567)
T KOG0345|consen 130 EGPNILVGTPGRLLDILQREAEKLS-FRSLEILVLDEADRLLDMGFEASVNTILSFL-----PKQRRTGLFSATQTQEVE 203 (567)
T ss_pred hCCcEEEeCchhHHHHHhchhhhcc-ccccceEEecchHhHhcccHHHHHHHHHHhc-----ccccccccccchhhHHHH
Confidence 5889999999999999987554333 6789999999999999999999999999999 578999999999998877
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccccc--ccccceeeEEEecccchhhHHHHHHHhC-CCcEE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG--ITKTLTESKILCKHDEKDSYLYYFILQH-PGRTL 1081 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~I 1081 (1493)
++.. .++.+|..+.+..... .+..+...|..|..+.|...++.++..+ .+++|
T Consensus 204 dL~r------------------------aGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~i 259 (567)
T KOG0345|consen 204 DLAR------------------------AGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCI 259 (567)
T ss_pred HHHH------------------------hhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEE
Confidence 6542 3566777776665544 6777888999999999999999999876 67999
Q ss_pred EEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChh
Q psy16310 1082 VFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159 (1493)
Q Consensus 1082 VF~~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~ 1159 (1493)
||++|+.+++..+..|..+ ...+..+||.|.+.+|..+++.|+.....||+||||++||||||+|++||+||+|.++.
T Consensus 260 VFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~ 339 (567)
T KOG0345|consen 260 VFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPS 339 (567)
T ss_pred EEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChh
Confidence 9999999999999999876 56788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCeEEEEecCCCHHHHH
Q psy16310 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~ 1190 (1493)
+|+||+|||||+|+.|.|++|+.|.|..+..
T Consensus 340 ~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 340 SFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred HHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 9999999999999999999999997665443
No 14
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-61 Score=593.02 Aligned_cols=363 Identities=35% Similarity=0.597 Sum_probs=322.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
..|+++++++.++++|.+.||..|||||.++||.++ .|+|++++|+||||||+||++|+++.+....
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l-~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------------ 95 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLIL-AGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------------ 95 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhccc------------
Confidence 569999999999999999999999999999999555 7799999999999999999999999974210
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
.....+ +|||+||||||.|+++.+..++.+. ++++.+++||.+...|...+..+
T Consensus 96 ------------------------~~~~~~-aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~ 150 (513)
T COG0513 96 ------------------------ERKYVS-ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRG 150 (513)
T ss_pred ------------------------ccCCCc-eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcC
Confidence 001111 9999999999999999999999998 79999999999999999999989
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
+||||||||||++++..+.+ .+.++.++|+||||+|+++||.+++..|+..++ ..+|+++||||+|..+..+
T Consensus 151 ~~ivVaTPGRllD~i~~~~l---~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p-----~~~qtllfSAT~~~~i~~l 222 (513)
T COG0513 151 VDIVVATPGRLLDLIKRGKL---DLSGVETLVLDEADRMLDMGFIDDIEKILKALP-----PDRQTLLFSATMPDDIREL 222 (513)
T ss_pred CCEEEECccHHHHHHHcCCc---chhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC-----cccEEEEEecCCCHHHHHH
Confidence 99999999999999998753 466899999999999999999999999999984 5899999999999866554
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccccc--ccccceeeEEEecccc-hhhHHHHHHHhC-CCcEEE
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG--ITKTLTESKILCKHDE-KDSYLYYFILQH-PGRTLV 1082 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IV 1082 (1493)
... .+.+|..+.+..... ....+.+.++.+.... |...|..++... ..++||
T Consensus 223 ~~~------------------------~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IV 278 (513)
T COG0513 223 ARR------------------------YLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIV 278 (513)
T ss_pred HHH------------------------HccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 422 123455555553333 6788999999998876 999988888765 456999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHH
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yi 1162 (1493)
||+|+..|+.|+..|...|+.+..+||+|+|.+|.++++.|++|+.+|||||||++||||||+|++|||||+|.+.+.|+
T Consensus 279 F~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yv 358 (513)
T COG0513 279 FVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYV 358 (513)
T ss_pred EeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEecCC-CHHHHHHHHHhccccC
Q psy16310 1163 HRSGRTARANNEGLTLVLIESD-EIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1163 qr~GR~gR~g~~G~~i~l~~~~-e~~~~~~~~~~~~~~~ 1200 (1493)
||+|||||+|+.|.+++|+++. |...+..+.+.+....
T Consensus 359 HRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~ 397 (513)
T COG0513 359 HRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKL 397 (513)
T ss_pred eccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999986 8899999988877653
No 15
>KOG0328|consensus
Probab=100.00 E-value=2.6e-61 Score=497.23 Aligned_cols=370 Identities=27% Similarity=0.498 Sum_probs=323.7
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
....+|+++||.+.+++++++.||++|+.+|+.|||.++ .|+|++++|..|+|||.+|.+.+++.+.
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d------------ 90 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLD------------ 90 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeecc------------
Confidence 345689999999999999999999999999999999655 7899999999999999999999887652
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 924 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 924 (1493)
...+..++|||+||||||.|+.+.+..++.++++.+..+.||.+..+..+.+.
T Consensus 91 ---------------------------~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld 143 (400)
T KOG0328|consen 91 ---------------------------ISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLD 143 (400)
T ss_pred ---------------------------cccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhc
Confidence 22445689999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.+.+++.|||||+.++++++.+. -..+++||+||||.|++.||..++..+...+ |+..|++++|||+|.++.
T Consensus 144 ~G~hvVsGtPGrv~dmikr~~L~---tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l-----p~~~Qvv~~SATlp~eil 215 (400)
T KOG0328|consen 144 YGQHVVSGTPGRVLDMIKRRSLR---TRAVKMLVLDEADEMLNKGFKEQIYDIYRYL-----PPGAQVVLVSATLPHEIL 215 (400)
T ss_pred ccceEeeCCCchHHHHHHhcccc---ccceeEEEeccHHHHHHhhHHHHHHHHHHhC-----CCCceEEEEeccCcHHHH
Confidence 99999999999999999988754 4478999999999999999999999999998 588999999999998877
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc-hhhHHHHHHHhC-CCcEEE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQH-PGRTLV 1082 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IV 1082 (1493)
+....+ ..+|..+-..........+.++++.+..++ |...|.++-... -.+++|
T Consensus 216 emt~kf------------------------mtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavI 271 (400)
T KOG0328|consen 216 EMTEKF------------------------MTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVI 271 (400)
T ss_pred HHHHHh------------------------cCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEE
Confidence 654322 234444444444455666778877776665 666666554322 468999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHH
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yi 1162 (1493)
||||+..+++|.+.|+..++.+..+||+|+|++|..++..|++|+.+||++|||.+||+|+|.|++|||||+|.+.+.|+
T Consensus 272 FcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YI 351 (400)
T KOG0328|consen 272 FCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYI 351 (400)
T ss_pred EecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCC
Q psy16310 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208 (1493)
Q Consensus 1163 qr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~ 1208 (1493)
||+||.||.|+.|.++-|+...|...++.+.+.+.-.+ ..+|+.
T Consensus 352 HRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i--~emp~n 395 (400)
T KOG0328|consen 352 HRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQI--DEMPMN 395 (400)
T ss_pred hhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhc--ccccch
Confidence 99999999999999999999999999999988876543 344443
No 16
>KOG0340|consensus
Probab=100.00 E-value=2.7e-61 Score=513.95 Aligned_cols=360 Identities=34% Similarity=0.578 Sum_probs=315.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
...|+.|||++|+.+.|..+|+..|||+|..||| .++.|+|+|.||.||||||.+|.||+++++..
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIp-kILeGrdcig~AkTGsGKT~AFaLPil~rLse------------- 71 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIP-KILEGRDCIGCAKTGSGKTAAFALPILNRLSE------------- 71 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhH-HHhcccccccccccCCCcchhhhHHHHHhhcc-------------
Confidence 4679999999999999999999999999999999 56689999999999999999999999998843
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
.+.+..++|++||||||.|+.+.|..+++..++++..++||++.-.+-..+...
T Consensus 72 --------------------------dP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~r 125 (442)
T KOG0340|consen 72 --------------------------DPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDR 125 (442)
T ss_pred --------------------------CCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccC
Confidence 245678999999999999999999999999999999999999999998999999
Q ss_pred CCEEEeCcHHHHHHHHcCCcc-ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFH-LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~-~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+||+|+|||+|.+++..+... ...+.++.++|+||||+|++..|.++++.+++.+
T Consensus 126 PHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l------------------------ 181 (442)
T KOG0340|consen 126 PHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL------------------------ 181 (442)
T ss_pred CCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC------------------------
Confidence 999999999999999866322 2236689999999999999999999999998765
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
+.++|+++||||++..+..+...-... +
T Consensus 182 ---------P~~RQtLlfSATitd~i~ql~~~~i~k------------------------~------------------- 209 (442)
T KOG0340|consen 182 ---------PKPRQTLLFSATITDTIKQLFGCPITK------------------------S------------------- 209 (442)
T ss_pred ---------CCccceEEEEeehhhHHHHhhcCCccc------------------------c-------------------
Confidence 556899999999998766543210000 0
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC----C
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH----P 544 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~----~ 544 (1493)
+ .+..+.....+....+...++.|+.+.+..+|++.|... .
T Consensus 210 -----------~------------------------a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~ 254 (442)
T KOG0340|consen 210 -----------I------------------------AFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKEN 254 (442)
T ss_pred -----------c------------------------ceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccC
Confidence 0 001111223345566777889999999999999999765 4
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s 624 (1493)
+.++||+++..+|+.|+..|+.+.+.+..+||.|+|.+|...+.+|+++..+||||||||+||+|||.|++|||||+|.+
T Consensus 255 ~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~ 334 (442)
T KOG0340|consen 255 GSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRD 334 (442)
T ss_pred ceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 625 SEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 625 ~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
+.+||||+|||+|+|+.|.++.|+++.|+.....++
T Consensus 335 P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE 370 (442)
T KOG0340|consen 335 PKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIE 370 (442)
T ss_pred HHHHHHhhcchhcccCCcceEEEechhhHHHHHHHH
Confidence 999999999999999999999999999998877764
No 17
>KOG0342|consensus
Probab=100.00 E-value=3.7e-60 Score=527.61 Aligned_cols=362 Identities=32% Similarity=0.493 Sum_probs=316.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
..|+++.|++..++++.++||..+|++|+.+|| .++.|+|+++.|.||||||++|+||+++.+++....
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~-pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~---------- 150 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIP-PLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK---------- 150 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcC-ccCCCccceeeeccCCCceeeehhHHHHHHHhcccC----------
Confidence 457889999999999999999999999999999 455788999999999999999999999999874322
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
..++..+||++||||||.|++.+++++..+. ++.+..+.||+........+.++
T Consensus 151 -------------------------~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~ 205 (543)
T KOG0342|consen 151 -------------------------PRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKG 205 (543)
T ss_pred -------------------------CCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhcc
Confidence 2366789999999999999999999999988 89999999999999999999999
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+|||||.++|++....+ +..+.++|+||||+++++||...+++|+..+
T Consensus 206 ~niliATPGRLlDHlqNt~~f~--~r~~k~lvlDEADrlLd~GF~~di~~Ii~~l------------------------- 258 (543)
T KOG0342|consen 206 CNILIATPGRLLDHLQNTSGFL--FRNLKCLVLDEADRLLDIGFEEDVEQIIKIL------------------------- 258 (543)
T ss_pred ccEEEeCCchHHhHhhcCCcch--hhccceeEeecchhhhhcccHHHHHHHHHhc-------------------------
Confidence 9999999999999999876533 3456899999999999999999999999887
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+..+|+++||||.|..+.++.+..... .+..++...
T Consensus 259 --------pk~rqt~LFSAT~~~kV~~l~~~~L~~-----------------------d~~~v~~~d------------- 294 (543)
T KOG0342|consen 259 --------PKQRQTLLFSATQPSKVKDLARGALKR-----------------------DPVFVNVDD------------- 294 (543)
T ss_pred --------cccceeeEeeCCCcHHHHHHHHHhhcC-----------------------CceEeecCC-------------
Confidence 445899999999999988877543321 011111000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCC--CcE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP--GRT 547 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~~~ 547 (1493)
.........+.+.++++..+.++.+++.+|.++- .++
T Consensus 295 -----------------------------------------~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~Ki 333 (543)
T KOG0342|consen 295 -----------------------------------------GGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKI 333 (543)
T ss_pred -----------------------------------------CCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceE
Confidence 0011122345667788888888899999998773 699
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+|+..+..++.+|+...++|..+||+++|..|+.++..|++.+.-|||||||+|||+|+|+|++||+||+|.++.+
T Consensus 334 iVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~ 413 (543)
T KOG0342|consen 334 IVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQ 413 (543)
T ss_pred EEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
||||+|||||.|..|.+++|+.|.|..+...+.
T Consensus 414 YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 414 YIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred HHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999888875
No 18
>KOG0326|consensus
Probab=100.00 E-value=2.7e-60 Score=497.41 Aligned_cols=360 Identities=30% Similarity=0.519 Sum_probs=326.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
..|+++.|...|+..+.+.||+.|+|+|.++||.++ .|+|+++.|..|+|||.+|++|+++.+..
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid~-------------- 149 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKIDP-------------- 149 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcCc--------------
Confidence 469999999999999999999999999999999655 88999999999999999999999988732
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
.....+++|++||||||.|+.+.++.+++++++.+...+||++.....-.+...+
T Consensus 150 -------------------------~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~V 204 (459)
T KOG0326|consen 150 -------------------------KKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTV 204 (459)
T ss_pred -------------------------cccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCce
Confidence 3455789999999999999999999999999999999999999998888888899
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+++|+||||+++++..+- ..++++.++|+||||.|++..|.+.+..++..+ |..+|++++|||+|-.+..+.
T Consensus 205 H~~vgTPGRIlDL~~KgV---a~ls~c~~lV~DEADKlLs~~F~~~~e~li~~l-----P~~rQillySATFP~tVk~Fm 276 (459)
T KOG0326|consen 205 HLVVGTPGRILDLAKKGV---ADLSDCVILVMDEADKLLSVDFQPIVEKLISFL-----PKERQILLYSATFPLTVKGFM 276 (459)
T ss_pred EEEEcCChhHHHHHhccc---ccchhceEEEechhhhhhchhhhhHHHHHHHhC-----CccceeeEEecccchhHHHHH
Confidence 999999999999998765 456789999999999999999999999999998 588999999999998887766
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh-CCCcEEEEecc
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNS 1086 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~IVF~~s 1086 (1493)
.. ++..|-.+.+.+.. ....+.++|..+....|...|..+... .-.+.||||||
T Consensus 277 ~~------------------------~l~kPy~INLM~eL-tl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS 331 (459)
T KOG0326|consen 277 DR------------------------HLKKPYEINLMEEL-TLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 331 (459)
T ss_pred HH------------------------hccCcceeehhhhh-hhcchhhheeeechhhhhhhHHHHHHHhcccceEEEecc
Confidence 32 24445555555443 456788899999999998888766544 35789999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHh
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~G 1166 (1493)
...++.||..+.++|+.++.+|+.|.|.+|.+++..|++|.++.|||||.+.||||+++|++|||||+|.+.++|+||+|
T Consensus 332 ~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIG 411 (459)
T KOG0326|consen 332 TNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIG 411 (459)
T ss_pred chHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1167 R~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
|.||.|..|.||.+++-.|...+.+++..++..+
T Consensus 412 RsGRFGhlGlAInLityedrf~L~~IE~eLGtEI 445 (459)
T KOG0326|consen 412 RSGRFGHLGLAINLITYEDRFNLYRIEQELGTEI 445 (459)
T ss_pred CCccCCCcceEEEEEehhhhhhHHHHHHHhcccc
Confidence 9999999999999999999999999999998754
No 19
>KOG0343|consensus
Probab=100.00 E-value=7.4e-60 Score=527.03 Aligned_cols=362 Identities=32% Similarity=0.517 Sum_probs=313.3
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
.+..|.+|+|+..++++|.+.+|..||.+|+.+||.+| .|+|||..|.|||||||+|++|+|++|+.....
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs-------- 137 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS-------- 137 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcCCC--------
Confidence 34579999999999999999999999999999999777 679999999999999999999999999875433
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
...|.-||||+||||||.|++.++.+.+++++++.+++.||.........+.
T Consensus 138 ---------------------------~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~- 189 (758)
T KOG0343|consen 138 ---------------------------PTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS- 189 (758)
T ss_pred ---------------------------CCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-
Confidence 3456779999999999999999999999999999999999998777766655
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
..+|+|||||||+.+|...... .-+++.+||+||||+|++|||...+..|+..+
T Consensus 190 ~mNILVCTPGRLLQHmde~~~f--~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l------------------------ 243 (758)
T KOG0343|consen 190 QMNILVCTPGRLLQHMDENPNF--STSNLQMLVLDEADRMLDMGFKKTLNAIIENL------------------------ 243 (758)
T ss_pred cCCeEEechHHHHHHhhhcCCC--CCCcceEEEeccHHHHHHHhHHHHHHHHHHhC------------------------
Confidence 4699999999999999765321 23478999999999999999999999999988
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
++.+|+++||||.+..+..++++... .|.++.+.
T Consensus 244 ---------P~~RQTLLFSATqt~svkdLaRLsL~------------------------dP~~vsvh------------- 277 (758)
T KOG0343|consen 244 ---------PKKRQTLLFSATQTKSVKDLARLSLK------------------------DPVYVSVH------------- 277 (758)
T ss_pred ---------ChhheeeeeecccchhHHHHHHhhcC------------------------CCcEEEEe-------------
Confidence 56689999999999998887764331 12111110
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcE
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 547 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~ 547 (1493)
.....+.+..+.++++.+....|..+|..|+..+ ..++
T Consensus 278 -----------------------------------------e~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~ 316 (758)
T KOG0343|consen 278 -----------------------------------------ENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKS 316 (758)
T ss_pred -----------------------------------------ccccccChhhhhheEEEEehhhHHHHHHHHHHhccccce
Confidence 0111234566778888899999999999999888 4699
Q ss_pred EEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCCh
Q psy16310 548 LVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~ 625 (1493)
|||+.|++.+..+++.|+.+ |+++..+||.|+|..|..++..|-..+.-||+|||+++||||+|.|++||+||+|.++
T Consensus 317 iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv 396 (758)
T KOG0343|consen 317 IVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDV 396 (758)
T ss_pred EEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhH
Confidence 99999999999999999987 7888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCeEEEEecCCcc-hhhhhhh
Q psy16310 626 EIYIHRSGRTARANNEGLTVVLIESDEI-PLKTKFN 660 (1493)
Q Consensus 626 ~~yiQR~GRagR~g~~G~~i~l~~~~e~-~~~~~l~ 660 (1493)
.+||||+|||||.+..|.|+++++|+|. .+...++
T Consensus 397 ~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 397 DTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred HHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 9999999999999999999999999984 4444443
No 20
>KOG0333|consensus
Probab=100.00 E-value=8e-59 Score=517.07 Aligned_cols=392 Identities=30% Similarity=0.461 Sum_probs=321.5
Q ss_pred cccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCcc
Q psy16310 146 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225 (1493)
Q Consensus 146 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~ 225 (1493)
.+.++.+|++.+++..+++.+.+.||..|+|||..+|| ....++|+|..|.||||||++|++|++..|........
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aip-l~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~--- 315 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIP-LGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMAR--- 315 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhcc-chhccCCeeeEEeccCCccccchhhHHHHHHcCCCcch---
Confidence 35678899999999999999999999999999999999 56678999999999999999999999988864321110
Q ss_pred CCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH
Q psy16310 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 305 (1493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~ 305 (1493)
.-...-+|+++||+|||+||+||...-..++.++++++..++||.+..++--.
T Consensus 316 ---------------------------~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fq 368 (673)
T KOG0333|consen 316 ---------------------------LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQ 368 (673)
T ss_pred ---------------------------hhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhh
Confidence 01223578999999999999999999999999999999999999999999888
Q ss_pred hcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 306 l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
+..+|+|+|+|||+|.+.|.+..+- |.++.++|+||||+|+++||.+++..||..++........ ......
T Consensus 369 ls~gceiviatPgrLid~Lenr~lv---l~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~t------de~~~~ 439 (673)
T KOG0333|consen 369 LSMGCEIVIATPGRLIDSLENRYLV---LNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDT------DEKEGE 439 (673)
T ss_pred hhccceeeecCchHHHHHHHHHHHH---hccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCc------cchhhH
Confidence 8999999999999999999876654 4589999999999999999999999999998755322100 011112
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccc
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1493)
.+++... .....-+|+++||||+|+.+..+++..... |.++
T Consensus 440 ~~~~~~~--~~~k~yrqT~mftatm~p~verlar~ylr~------------------------pv~v------------- 480 (673)
T KOG0333|consen 440 ERVRKNF--SSSKKYRQTVMFTATMPPAVERLARSYLRR------------------------PVVV------------- 480 (673)
T ss_pred HHHHhhc--ccccceeEEEEEecCCChHHHHHHHHHhhC------------------------CeEE-------------
Confidence 2222211 222355899999999999887766422211 1110
Q ss_pred hhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-C
Q psy16310 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-P 544 (1493)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~ 544 (1493)
...........+.+.......+.+...|..+|... .
T Consensus 481 -------------------------------------------tig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ 517 (673)
T KOG0333|consen 481 -------------------------------------------TIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFD 517 (673)
T ss_pred -------------------------------------------EeccCCCCccchheEEEEecchHHHHHHHHHHHhCCC
Confidence 00111111223344455566777888888888877 6
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s 624 (1493)
.++|||+|+.+.|+.|++.|...|+.+..|||+-+|.+|..++..|+.|...|||||||++||||||+|.+|||||++.+
T Consensus 518 ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaks 597 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKS 597 (673)
T ss_pred CCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 625 SEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 625 ~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
..+|+||+|||||+|+.|.+++|+++.|...+..|
T Consensus 598 ieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydL 632 (673)
T KOG0333|consen 598 IEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDL 632 (673)
T ss_pred HHHHHHHhccccccccCceeEEEeccchhHHHHHH
Confidence 99999999999999999999999999997766555
No 21
>KOG0345|consensus
Probab=100.00 E-value=1.2e-58 Score=510.80 Aligned_cols=363 Identities=33% Similarity=0.518 Sum_probs=305.8
Q ss_pred cccccC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 152 EWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 152 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
.|++++ |+++++.++...||...||+|..+|| .+.+++||++.|+||||||+||++|++..++.......
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIP-lll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~------- 76 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIP-LLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP------- 76 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhH-HHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-------
Confidence 466655 55999999999999999999999999 67789999999999999999999999999875322211
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCC-CCeEEEEEEcCCCHHHHHHHhc-
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY-TPVKVACVVGGMSTEKQLRILN- 307 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~-~~i~v~~~~G~~~~~~~~~~l~- 307 (1493)
.....+|||+||||||.||.+++..+..+ .++++.+++||.+.......+.
T Consensus 77 ---------------------------~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fke 129 (567)
T KOG0345|consen 77 ---------------------------PGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKE 129 (567)
T ss_pred ---------------------------ccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHH
Confidence 11357999999999999999999888776 6799999999998888877664
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
++++|+|||||||.+++++....++ +.++++||+||||+++++||..+++.|+..++
T Consensus 130 e~~nIlVgTPGRL~di~~~~~~~l~-~rsLe~LVLDEADrLldmgFe~~~n~ILs~LP---------------------- 186 (567)
T KOG0345|consen 130 EGPNILVGTPGRLLDILQREAEKLS-FRSLEILVLDEADRLLDMGFEASVNTILSFLP---------------------- 186 (567)
T ss_pred hCCcEEEeCchhHHHHHhchhhhcc-ccccceEEecchHhHhcccHHHHHHHHHHhcc----------------------
Confidence 5789999999999999987554443 66899999999999999999999999999884
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
..+++-+||||.+..+.++......++ ..+.+.
T Consensus 187 -----------KQRRTGLFSATq~~~v~dL~raGLRNp------------------------v~V~V~------------ 219 (567)
T KOG0345|consen 187 -----------KQRRTGLFSATQTQEVEDLARAGLRNP------------------------VRVSVK------------ 219 (567)
T ss_pred -----------cccccccccchhhHHHHHHHHhhccCc------------------------eeeeec------------
Confidence 447899999999998877654222111 111000
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCc
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGR 546 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~ 546 (1493)
.......++.+...+..|..+.|...+.++|... ..+
T Consensus 220 ------------------------------------------~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK 257 (567)
T KOG0345|consen 220 ------------------------------------------EKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKK 257 (567)
T ss_pred ------------------------------------------ccccccCchhhcceeeEecHHHHHHHHHHHHhcccccc
Confidence 0001113455667788999999999999999886 479
Q ss_pred EEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC
Q psy16310 547 TLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s 624 (1493)
+|||++|+.+++.....|... ...+..+||.|++.+|.++++.|++....+|+||||++||||||+|++||+||+|.+
T Consensus 258 ~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~ 337 (567)
T KOG0345|consen 258 CIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKD 337 (567)
T ss_pred EEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCC
Confidence 999999999999999888765 678899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 625 SEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 625 ~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
+..|+||+|||||+|+.|.+++|+.+.|..+.+.+..
T Consensus 338 ~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 338 PSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred hhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 9999999999999999999999999988777666543
No 22
>KOG0348|consensus
Probab=100.00 E-value=1.2e-58 Score=516.30 Aligned_cols=400 Identities=26% Similarity=0.413 Sum_probs=311.2
Q ss_pred cccccccccCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
..-..|.++||++.+.+.|.. +++..||.+|+++|| .+.+|+|++|.++||||||++|++|++++|.......
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP-~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki----- 206 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIP-VLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI----- 206 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchh-hhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc-----
Confidence 344679999999999999965 599999999999999 5667999999999999999999999999997643221
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCC-eEEEEEEcCCCHHHHHHH
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRI 305 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~-i~v~~~~G~~~~~~~~~~ 305 (1493)
+...|+.|||||||||||.|+++++..+..++. +-.+.+.||...+.+...
T Consensus 207 ----------------------------~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKAR 258 (708)
T KOG0348|consen 207 ----------------------------QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKAR 258 (708)
T ss_pred ----------------------------cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHH
Confidence 235678999999999999999999999987655 556778899999999999
Q ss_pred hcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 306 l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
+.+|++|+|+|||||+|+|.+... ..+++++||||||||++++.||...+..|++.+....... ..
T Consensus 259 LRKGiNILIgTPGRLvDHLknT~~--i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e--------~~---- 324 (708)
T KOG0348|consen 259 LRKGINILIGTPGRLVDHLKNTKS--IKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAE--------CK---- 324 (708)
T ss_pred HhcCceEEEcCchHHHHHHhccch--heeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchh--------cc----
Confidence 999999999999999999986542 2356899999999999999999999999999885421100 01
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhh-hcccccc
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK-IGITKTL 464 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 464 (1493)
....++..|.+++|||++..+..+..+....+ ..+.+... ....
T Consensus 325 --------~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDp------------------------v~I~ld~s~~~~~--- 369 (708)
T KOG0348|consen 325 --------DPKLPHQLQNMLLSATLTDGVNRLADLSLKDP------------------------VYISLDKSHSQLN--- 369 (708)
T ss_pred --------cccccHHHHhHhhhhhhHHHHHHHhhccccCc------------------------eeeeccchhhhcC---
Confidence 11124568999999999998877665433211 11110000 0000
Q ss_pred chhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-
Q psy16310 465 TESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH- 543 (1493)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~- 543 (1493)
+.. ..+.....+...+-.....++..+...+.+.....++-.|..+|...
T Consensus 370 -----------------------p~~------~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~ 420 (708)
T KOG0348|consen 370 -----------------------PKD------KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKV 420 (708)
T ss_pred -----------------------cch------hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHh
Confidence 000 00000000111111133455666666667777767776677766543
Q ss_pred ----CCcEEEEecchhhHHHHHHHHHhc----------------------CCCccccccCCCHHHHHHHHHHHhcCCCeE
Q psy16310 544 ----PGRTLVFCNSISSVKRLTQLLTML----------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597 (1493)
Q Consensus 544 ----~~~~IIF~~s~~~a~~L~~~L~~~----------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~V 597 (1493)
..++|||+.+++.++..+.+|... +..++.+||+|+|++|+.+++.|+.....|
T Consensus 421 k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~V 500 (708)
T KOG0348|consen 421 KFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAV 500 (708)
T ss_pred hhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceE
Confidence 458999999999999998888542 355778999999999999999999999999
Q ss_pred EEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 598 LVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
|+||||++||||+|+|++||+||+|.++.+|+||+|||+|+|..|.+++|..|.|..+...+
T Consensus 501 LLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l 562 (708)
T KOG0348|consen 501 LLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYL 562 (708)
T ss_pred EEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998866555
No 23
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-58 Score=564.38 Aligned_cols=359 Identities=35% Similarity=0.589 Sum_probs=303.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
..|+++++++.+++++.++||..|||||..+||. +..|+|++++|+||||||++|+||+++++....
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~-~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------------ 95 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPL-ILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------------ 95 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHHhccc------------
Confidence 5689999999999999999999999999999995 457799999999999999999999999974310
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
.....+ +|||+||||||.|+++.+..++.+. ++++.+++||.+...+...+..+
T Consensus 96 ------------------------~~~~~~-aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~ 150 (513)
T COG0513 96 ------------------------ERKYVS-ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRG 150 (513)
T ss_pred ------------------------ccCCCc-eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcC
Confidence 001111 9999999999999999999999988 79999999999999999999989
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
+||||||||||++++..+.++ ++++.++|+||||+|+++||.+.+..|+..++
T Consensus 151 ~~ivVaTPGRllD~i~~~~l~---l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p------------------------ 203 (513)
T COG0513 151 VDIVVATPGRLLDLIKRGKLD---LSGVETLVLDEADRMLDMGFIDDIEKILKALP------------------------ 203 (513)
T ss_pred CCEEEECccHHHHHHHcCCcc---hhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC------------------------
Confidence 999999999999999988554 55899999999999999999999999998873
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
..+|+++||||+|..+..+.+.... .+..+.+.
T Consensus 204 ---------~~~qtllfSAT~~~~i~~l~~~~l~------------------------~p~~i~v~-------------- 236 (513)
T COG0513 204 ---------PDRQTLLFSATMPDDIRELARRYLN------------------------DPVEIEVS-------------- 236 (513)
T ss_pred ---------cccEEEEEecCCCHHHHHHHHHHcc------------------------CCcEEEEc--------------
Confidence 3589999999999876655432111 11000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCc-hhhHHHHHHhhCC-CcE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQHP-GRT 547 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~-~~~ 547 (1493)
..........+.+.++.+.... |...|..++.... .++
T Consensus 237 ----------------------------------------~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~ 276 (513)
T COG0513 237 ----------------------------------------VEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRV 276 (513)
T ss_pred ----------------------------------------cccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeE
Confidence 0000012234455556666554 8899999888764 469
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+|+..|..|+..|...|+.+..+||+|+|.+|.++++.|++|+.+|||||||++||||||+|++|||||+|.++.+
T Consensus 277 IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~ 356 (513)
T COG0513 277 IVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPED 356 (513)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCC-cchhhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESD-EIPLKTKFNL 661 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~-e~~~~~~l~~ 661 (1493)
|+||+|||||+|+.|.+++|+++. |...+..++.
T Consensus 357 yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~ 391 (513)
T COG0513 357 YVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEK 391 (513)
T ss_pred heeccCccccCCCCCeEEEEeCcHHHHHHHHHHHH
Confidence 999999999999999999999985 6666666644
No 24
>KOG0348|consensus
Probab=100.00 E-value=7.6e-58 Score=509.78 Aligned_cols=389 Identities=28% Similarity=0.423 Sum_probs=316.3
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 768 AEWVKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..|..+||++.+...|.. ++|..||.+|.++||. +.+|+|++|.|+||||||++|++|+++.+.......
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~-lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki-------- 206 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPV-LLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI-------- 206 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhh-hhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc--------
Confidence 469999999999999975 7999999999999995 557999999999999999999999999987532211
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCC-cEEEEEEcCCCHHHHHHHhcC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~-~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
....|+.+||||||||||.|+|+.+.++.+.+- +-.+.+.||.........|++
T Consensus 207 -------------------------~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRK 261 (708)
T KOG0348|consen 207 -------------------------QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRK 261 (708)
T ss_pred -------------------------cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhc
Confidence 246788999999999999999999999988765 445677899998888999999
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcc--------cCCCCCceEEEEec
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM--------TETSQPRQTFVFSA 997 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~--------~~~~~~~q~ll~SA 997 (1493)
|++|+|+|||||.|+|.+... ..+.++++|||||||++++.||..++..|+..+.. ...+..+|.+++||
T Consensus 262 GiNILIgTPGRLvDHLknT~~--i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSA 339 (708)
T KOG0348|consen 262 GINILIGTPGRLVDHLKNTKS--IKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSA 339 (708)
T ss_pred CceEEEcCchHHHHHHhccch--heeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhh
Confidence 999999999999999986432 34678999999999999999999999999998832 12334589999999
Q ss_pred ccccchHhHHhhhccCcCcccccCC----CchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHH
Q psy16310 998 TLTHSLKNSLNLKKGQSKSKKVSKG----DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073 (1493)
Q Consensus 998 Tl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 1073 (1493)
|++..+..+.......+........ .+....+.. ...+..-+-.....++..+.+.+..++..-+.-.|..++
T Consensus 340 TLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~e---v~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L 416 (708)
T KOG0348|consen 340 TLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQE---VDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALL 416 (708)
T ss_pred hhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhh---cCCcccccccccccCcHHhhhceEecCCchhHHHHHHHH
Confidence 9998888776544443333221111 011111111 111111111134567888999999999998888888887
Q ss_pred HhC-----CCcEEEEecchhhHHHHHHHHHhc----------------------CCCccccccCCCHHHHHHHHHHHhcC
Q psy16310 1074 LQH-----PGRTLVFCNSISSVKRLTQLLTML----------------------KCSPLPLHASMNQRQRLKNLDRFRDQ 1126 (1493)
Q Consensus 1074 ~~~-----~~~~IVF~~s~~~~~~l~~~L~~~----------------------~~~~~~lhg~m~~~~R~~~~~~F~~g 1126 (1493)
... ..++|||+.+.+.++.-+.+|... +.+++-+||+|+|++|..+++.|...
T Consensus 417 ~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~ 496 (708)
T KOG0348|consen 417 LNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHS 496 (708)
T ss_pred HHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccc
Confidence 654 458999999999999999888643 34567799999999999999999999
Q ss_pred CCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHh
Q psy16310 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1127 ~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
.-.||+||||++||+|+|+|.+||+||+|.+..+|+||+|||+|+|..|.+++|+.|.|..++..+...
T Consensus 497 ~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 497 RRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred cceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999866555443
No 25
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-56 Score=547.74 Aligned_cols=371 Identities=30% Similarity=0.477 Sum_probs=315.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++++|++.++++|...||..|||+|.+|||. +..|+|++++||||||||++|++|+++.++......
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~-il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~--------- 77 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPL-TLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE--------- 77 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc---------
Confidence 4799999999999999999999999999999995 557899999999999999999999999886532100
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
.....++++|||+||||||.|+++.+..++...++++..++||.....+...+..++
T Consensus 78 -----------------------~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 134 (423)
T PRK04837 78 -----------------------DRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 134 (423)
T ss_pred -----------------------ccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCC
Confidence 011345789999999999999999999999999999999999999988888888899
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|+|+||++|++++..+.. .+.++++|||||||+|++++|...+..++..++. ...+++++||||++..+....
T Consensus 135 ~IlV~TP~~l~~~l~~~~~---~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~---~~~~~~~l~SAT~~~~~~~~~ 208 (423)
T PRK04837 135 DILIGTTGRLIDYAKQNHI---NLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPP---ANQRLNMLFSATLSYRVRELA 208 (423)
T ss_pred CEEEECHHHHHHHHHcCCc---ccccccEEEEecHHHHhhcccHHHHHHHHHhCCC---ccceeEEEEeccCCHHHHHHH
Confidence 9999999999999987654 3668999999999999999999999999888742 245789999999997765543
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecc
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNS 1086 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s 1086 (1493)
... +..+..+.+.........+.+....+....+...+..++... ..++||||++
T Consensus 209 ~~~------------------------~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t 264 (423)
T PRK04837 209 FEH------------------------MNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANT 264 (423)
T ss_pred HHH------------------------CCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 211 122333333333333344555555556666777777776654 6789999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHh
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~G 1166 (1493)
+..|+.++..|...|+.+..+||+|++.+|..+++.|++|+++||||||+++||||+|+|++|||||+|.+.++|+||+|
T Consensus 265 ~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~G 344 (423)
T PRK04837 265 KHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIG 344 (423)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCC
Q psy16310 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201 (1493)
Q Consensus 1167 R~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~ 1201 (1493)
||||+|+.|.|++|+++.+...+..+.+.+...+.
T Consensus 345 R~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~ 379 (423)
T PRK04837 345 RTGRAGASGHSISLACEEYALNLPAIETYIGHSIP 379 (423)
T ss_pred cccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999888888877766543
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.1e-56 Score=552.58 Aligned_cols=361 Identities=32% Similarity=0.534 Sum_probs=314.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|.+++|++.++++|.++||.+|||+|.++||. +..++|+|++||||||||++|++|+++.+..
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~-ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-------------- 70 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPH-LLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-------------- 70 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh--------------
Confidence 4699999999999999999999999999999995 5578999999999999999999999987632
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...++++|||+||++||.|+++.+..+...+ ++.+..++||.+...+...+..+
T Consensus 71 -------------------------~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~ 125 (629)
T PRK11634 71 -------------------------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 (629)
T ss_pred -------------------------ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCC
Confidence 1234689999999999999999999987765 79999999999999998888889
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|||+||++|++++.++.+ .++++++|||||||+|++++|...+..++..+ +..+|+++||||+|..+...
T Consensus 126 ~~IVVgTPgrl~d~l~r~~l---~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~l-----p~~~q~llfSAT~p~~i~~i 197 (629)
T PRK11634 126 PQIVVGTPGRLLDHLKRGTL---DLSKLSGLVLDEADEMLRMGFIEDVETIMAQI-----PEGHQTALFSATMPEAIRRI 197 (629)
T ss_pred CCEEEECHHHHHHHHHcCCc---chhhceEEEeccHHHHhhcccHHHHHHHHHhC-----CCCCeEEEEEccCChhHHHH
Confidence 99999999999999987654 36689999999999999999999999999887 46789999999999776554
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEec
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCN 1085 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~ 1085 (1493)
.... +..+..+.+.........+.+.++.+....+...+..++... ..++||||+
T Consensus 198 ~~~~------------------------l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~ 253 (629)
T PRK11634 198 TRRF------------------------MKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVR 253 (629)
T ss_pred HHHH------------------------cCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEec
Confidence 3211 223333433333334445667777777777888887777654 568999999
Q ss_pred chhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1086 s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
|+..+..++..|...|+.+..+||+|++.+|..++++|++|+++|||||+++++|||+|+|++|||||+|.+.++|+||+
T Consensus 254 tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRi 333 (629)
T PRK11634 254 TKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRI 333 (629)
T ss_pred cHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1166 GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
|||||+|+.|.|++|+.+.+...++.+.+.+...+
T Consensus 334 GRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i 368 (629)
T PRK11634 334 GRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 368 (629)
T ss_pred ccccCCCCcceEEEEechHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999888888887766554
No 27
>KOG0335|consensus
Probab=100.00 E-value=3.7e-57 Score=515.94 Aligned_cols=368 Identities=31% Similarity=0.483 Sum_probs=319.8
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
..+..|.+-.+.+.+...+...||..|||+|+.+|| ++.+|+|+++||+||||||.||++|++.+++.........
T Consensus 71 ~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip-~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~--- 146 (482)
T KOG0335|consen 71 PHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIP-IISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGE--- 146 (482)
T ss_pred CCcccccccchhHHHhhccccccccCCCcceeeccc-eeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcc---
Confidence 344578888899999999999999999999999999 7789999999999999999999999999997653211110
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 924 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 924 (1493)
......+++|||+||||||.|++++.+++.....+++..++||.+...|.+.+.
T Consensus 147 --------------------------~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~ 200 (482)
T KOG0335|consen 147 --------------------------SGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIK 200 (482)
T ss_pred --------------------------cCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhc
Confidence 111246899999999999999999999999888999999999999999999999
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
+++||+|+|||+|.+++..+.+.+ .++++|||||||+|++ ++|.+++++|+..+.+.. ...+|+++||||+|..+
T Consensus 201 ~gcdIlvaTpGrL~d~~e~g~i~l---~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~-~~~~qt~mFSAtfp~~i 276 (482)
T KOG0335|consen 201 RGCDILVATPGRLKDLIERGKISL---DNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP-KNNRQTLLFSATFPKEI 276 (482)
T ss_pred cCccEEEecCchhhhhhhcceeeh---hhCcEEEecchHHhhhhccccccHHHHhcccCCCC-ccceeEEEEeccCChhh
Confidence 999999999999999999888654 4678999999999999 999999999999886543 35799999999999877
Q ss_pred HhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-----CC
Q psy16310 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-----PG 1078 (1493)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-----~~ 1078 (1493)
...+..+. ......+.+.........+.+....+...+|...|+.++... .+
T Consensus 277 q~l~~~fl-----------------------~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~ 333 (482)
T KOG0335|consen 277 QRLAADFL-----------------------KDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDG 333 (482)
T ss_pred hhhHHHHh-----------------------hccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccC
Confidence 65432111 111334455555566788899999999999999999998743 22
Q ss_pred -----cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec
Q psy16310 1079 -----RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153 (1493)
Q Consensus 1079 -----~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d 1153 (1493)
+++|||.|++.|..|+..|...++++..+||+.+|.+|.+.++.|++|.+.|||||+|++||+|||+|+|||+||
T Consensus 334 ~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyD 413 (482)
T KOG0335|consen 334 EPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYD 413 (482)
T ss_pred CcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEee
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHH
Q psy16310 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLY 1189 (1493)
Q Consensus 1154 ~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~ 1189 (1493)
+|.+..+|+||||||||+|+.|.++.|++.......
T Consensus 414 mP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~ 449 (482)
T KOG0335|consen 414 MPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIA 449 (482)
T ss_pred cCcchhhHHHhccccccCCCCceeEEEeccccchhH
Confidence 999999999999999999999999999985544333
No 28
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.2e-56 Score=555.07 Aligned_cols=370 Identities=29% Similarity=0.486 Sum_probs=314.1
Q ss_pred hhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcc
Q psy16310 763 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842 (1493)
Q Consensus 763 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~ 842 (1493)
.+.++.+|+++++++.++++|.++||++|||+|.++||. +..|+|+|++||||||||++|++|++.++.....
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~-~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~------ 197 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPI-ALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL------ 197 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------
Confidence 345678899999999999999999999999999999995 5578999999999999999999999988754210
Q ss_pred cCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH
Q psy16310 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~ 922 (1493)
.....++++|||+||||||.|+.+.+..++...++++.+++||.....+...
T Consensus 198 ----------------------------~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~ 249 (545)
T PTZ00110 198 ----------------------------LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA 249 (545)
T ss_pred ----------------------------ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH
Confidence 0123467899999999999999999999998899999999999999988888
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
+..+++|+|+||++|.+++..+.. .+.++++|||||||+|++++|...+..|+..+ .+.+|+++||||+|..
T Consensus 250 l~~~~~IlVaTPgrL~d~l~~~~~---~l~~v~~lViDEAd~mld~gf~~~i~~il~~~-----~~~~q~l~~SAT~p~~ 321 (545)
T PTZ00110 250 LRRGVEILIACPGRLIDFLESNVT---NLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI-----RPDRQTLMWSATWPKE 321 (545)
T ss_pred HHcCCCEEEECHHHHHHHHHcCCC---ChhhCcEEEeehHHhhhhcchHHHHHHHHHhC-----CCCCeEEEEEeCCCHH
Confidence 889999999999999999987653 46789999999999999999999999999887 3678999999999977
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccc-ccccccceeeEEEecccchhhHHHHHHHh---CCC
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK-IGITKTLTESKILCKHDEKDSYLYYFILQ---HPG 1078 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~ 1078 (1493)
+..+..... ...+..+.+... ......+.+....+....+...+..++.. ..+
T Consensus 322 v~~l~~~l~-----------------------~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~ 378 (545)
T PTZ00110 322 VQSLARDLC-----------------------KEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGD 378 (545)
T ss_pred HHHHHHHHh-----------------------ccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCC
Confidence 665442111 011111211111 12234455556666666777777777654 467
Q ss_pred cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCCh
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~ 1158 (1493)
++||||+|+..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++|||||+|.+.
T Consensus 379 k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~ 458 (545)
T PTZ00110 379 KILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQI 458 (545)
T ss_pred eEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1159 ~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
++|+||+|||||+|+.|.|++|+++.+......+.+.+..
T Consensus 459 ~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 459 EDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred HHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877777766654
No 29
>KOG0336|consensus
Probab=100.00 E-value=2.3e-57 Score=488.98 Aligned_cols=364 Identities=32% Similarity=0.535 Sum_probs=310.5
Q ss_pred ccccc-CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 768 AEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 768 ~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
-+|++ |.-.+.+++.+.+.||.+|||||.+||| ++.+|.|++++|+||+|||++|++|-+-++.....
T Consensus 219 ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWP-I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~---------- 287 (629)
T KOG0336|consen 219 CTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWP-ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK---------- 287 (629)
T ss_pred CcHHHHHhhhHHHHHHHHhccCCCCCcchhcccc-eeecCcceEEEEecCCCcCHHHhccceeeeeccch----------
Confidence 34543 5678899999999999999999999999 66789999999999999999999998877754221
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
......++.+|+++||||||.|+.-.+..+. +.+.+..|++||.+...|...++++
T Consensus 288 -----------------------~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrg 343 (629)
T KOG0336|consen 288 -----------------------RREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRG 343 (629)
T ss_pred -----------------------hhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcC
Confidence 1124567889999999999999998888764 6789999999999999999999999
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+|||+|.++...+.. ++..+.+||+||||+|+++||.+++..|+-.+ .+.+|+++.|||+|+.+..+
T Consensus 344 veiiiatPgrlndL~~~n~i---~l~siTYlVlDEADrMLDMgFEpqIrkilldi-----RPDRqtvmTSATWP~~VrrL 415 (629)
T KOG0336|consen 344 VEIIIATPGRLNDLQMDNVI---NLASITYLVLDEADRMLDMGFEPQIRKILLDI-----RPDRQTVMTSATWPEGVRRL 415 (629)
T ss_pred ceEEeeCCchHhhhhhcCee---eeeeeEEEEecchhhhhcccccHHHHHHhhhc-----CCcceeeeecccCchHHHHH
Confidence 99999999999999877664 46689999999999999999999999998776 48899999999999888765
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccc-cccccccceeeEEEecccchhhHHHHHHHhC--CCcEEEE
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYYFILQH--PGRTLVF 1083 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~IVF 1083 (1493)
... +++.|..+.+.. .......+.+..+.....++......|+... ..++|||
T Consensus 416 a~s------------------------Y~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiF 471 (629)
T KOG0336|consen 416 AQS------------------------YLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIF 471 (629)
T ss_pred HHH------------------------hhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEE
Confidence 522 223333332221 1223455666666666677776666666654 5689999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHH
Q psy16310 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163 (1493)
Q Consensus 1084 ~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiq 1163 (1493)
|.++..|+.|...|...|+.+..+||+-.|.+|+..++.|++|+++||||||+++||+|+|+|+||+|||+|.+++.|+|
T Consensus 472 v~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVH 551 (629)
T KOG0336|consen 472 VSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVH 551 (629)
T ss_pred EechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1164 r~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
|+||+||+|+.|.++.|++..+......+.+-|++
T Consensus 552 RvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~ 586 (629)
T KOG0336|consen 552 RVGRTGRAGRTGTSISFLTRNDWSMAEELIQILER 586 (629)
T ss_pred HhcccccCCCCcceEEEEehhhHHHHHHHHHHHHH
Confidence 99999999999999999999998887777666654
No 30
>KOG0346|consensus
Probab=100.00 E-value=4.2e-56 Score=485.63 Aligned_cols=360 Identities=31% Similarity=0.476 Sum_probs=317.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++|+|++.|++++.+.||++||-||+.+||.+| .|+|+++.|.||||||+||++|+++.++......
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t~--------- 88 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--------- 88 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc---------
Confidence 679999999999999999999999999999999555 7899999999999999999999999998764321
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCC--cEEEEEEcCCCHHHHHHHhcC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP--VKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~--~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
....++.++||+||||||.|++..+.++..+++ +++.-+...++.......|..
T Consensus 89 ------------------------~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d 144 (569)
T KOG0346|consen 89 ------------------------DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD 144 (569)
T ss_pred ------------------------cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc
Confidence 235678899999999999999999999887764 666667777777777788889
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
.|+|+|+||+++..++..+.. ..+..+.+||+||||.|+.-||.+++..+...+ |+..|.+++|||+..++..
T Consensus 145 ~pdIvV~TP~~ll~~~~~~~~--~~~~~l~~LVvDEADLllsfGYeedlk~l~~~L-----Pr~~Q~~LmSATl~dDv~~ 217 (569)
T KOG0346|consen 145 LPDIVVATPAKLLRHLAAGVL--EYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHL-----PRIYQCFLMSATLSDDVQA 217 (569)
T ss_pred CCCeEEeChHHHHHHHhhccc--hhhhheeeEEechhhhhhhcccHHHHHHHHHhC-----CchhhheeehhhhhhHHHH
Confidence 999999999999999988764 346689999999999999999999999999999 4778999999999877654
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccc-cccccceeeEEEecccchhhHHHHHHHhC--CCcEEE
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI-GITKTLTESKILCKHDEKDSYLYYFILQH--PGRTLV 1082 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~IV 1082 (1493)
.- .+.+.+|.++.+.+.. .....+.++++.|...+|...++.++.-. .|++||
T Consensus 218 LK------------------------kL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsli 273 (569)
T KOG0346|consen 218 LK------------------------KLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLI 273 (569)
T ss_pred HH------------------------HHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEE
Confidence 32 2345677777766543 34578999999999999998888877654 899999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehh--------------------------
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV-------------------------- 1136 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv-------------------------- 1136 (1493)
|+||+..|.+|.-.|+..|++..+++|.|+...|..++++|..|-++|+||||.
T Consensus 274 FVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkks 353 (569)
T KOG0346|consen 274 FVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKS 353 (569)
T ss_pred EEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999992
Q ss_pred ---------hhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHH
Q psy16310 1137 ---------AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1137 ---------~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
++||||+.+|.+|||||+|.+..+||||+|||||++++|.++.|+.|.+......+
T Consensus 354 kkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 354 KKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred ccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHH
Confidence 78999999999999999999999999999999999999999999999988744333
No 31
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.2e-55 Score=545.37 Aligned_cols=369 Identities=26% Similarity=0.437 Sum_probs=313.0
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 764 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
+.++.+|++++|++.+++.|...||..|||+|.++||.+ ..|+|++++||||||||++|++|++.+++......
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~i-l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~----- 190 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAA-LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH----- 190 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc-----
Confidence 456788999999999999999999999999999999954 57899999999999999999999998876421100
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l 923 (1493)
.....++++|||+||||||.|+.+.++.+++..++++..++||.....+...+
T Consensus 191 ---------------------------~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l 243 (518)
T PLN00206 191 ---------------------------PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRI 243 (518)
T ss_pred ---------------------------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHh
Confidence 01235678999999999999999999999988999999999999988888888
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|+|||+|.+++..+.. .+.++++|||||||+|++++|...+..++..+ +.+|+++||||+++.+
T Consensus 244 ~~~~~IiV~TPgrL~~~l~~~~~---~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l------~~~q~l~~SATl~~~v 314 (518)
T PLN00206 244 QQGVELIVGTPGRLIDLLSKHDI---ELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL------SQPQVLLFSATVSPEV 314 (518)
T ss_pred cCCCCEEEECHHHHHHHHHcCCc---cchheeEEEeecHHHHhhcchHHHHHHHHHhC------CCCcEEEEEeeCCHHH
Confidence 88999999999999999987643 46789999999999999999999999998876 4579999999999876
Q ss_pred HhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC---CCcE
Q psy16310 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH---PGRT 1080 (1493)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~ 1080 (1493)
....... ...+..+...........+.+....+....+...+..++... .+++
T Consensus 315 ~~l~~~~------------------------~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 370 (518)
T PLN00206 315 EKFASSL------------------------AKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPA 370 (518)
T ss_pred HHHHHHh------------------------CCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCE
Confidence 6544221 112233333333333344556666666667777777777543 4689
Q ss_pred EEEecchhhHHHHHHHHHh-cCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChh
Q psy16310 1081 LVFCNSISSVKRLTQLLTM-LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159 (1493)
Q Consensus 1081 IVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~ 1159 (1493)
||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++|||||+|.+..
T Consensus 371 iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~ 450 (518)
T PLN00206 371 VVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIK 450 (518)
T ss_pred EEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHH
Confidence 9999999999999999975 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
+|+||+|||||+|..|.+++|+++.+...+..+.+.+..
T Consensus 451 ~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~ 489 (518)
T PLN00206 451 EYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKS 489 (518)
T ss_pred HHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888888777664
No 32
>KOG0341|consensus
Probab=100.00 E-value=2.2e-57 Score=485.79 Aligned_cols=359 Identities=30% Similarity=0.510 Sum_probs=307.3
Q ss_pred hhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 762 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
+.+.++.+|.++.++..+++.|++.|+.+|||||.+.+|. +..|+|+|+.|-||||||++|.+|++-..+.....
T Consensus 164 ~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPv-vLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~---- 238 (610)
T KOG0341|consen 164 DIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMM---- 238 (610)
T ss_pred CCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcce-EeecCceeeEEeecCCceEEEeHHHHHHHHHHHhc----
Confidence 3456678899999999999999999999999999999994 55889999999999999999999987655442110
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC------CCcEEEEEEcCCC
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY------TPVKVACVVGGMS 915 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~------~~~~v~~~~gg~~ 915 (1493)
..-....++..||+||+||||.|++..+..+... ..++..+..||.+
T Consensus 239 ---------------------------lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~ 291 (610)
T KOG0341|consen 239 ---------------------------LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVP 291 (610)
T ss_pred ---------------------------CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCcc
Confidence 1123467889999999999999999988876543 3478899999999
Q ss_pred HHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEE
Q psy16310 916 TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995 (1493)
Q Consensus 916 ~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~ 995 (1493)
..+|....+++++|+|+|||||.++|...... |.-+++|++||||+|+++||..+++.|+..+. ..+|+++|
T Consensus 292 v~eql~~v~~GvHivVATPGRL~DmL~KK~~s---Ld~CRyL~lDEADRmiDmGFEddir~iF~~FK-----~QRQTLLF 363 (610)
T KOG0341|consen 292 VREQLDVVRRGVHIVVATPGRLMDMLAKKIMS---LDACRYLTLDEADRMIDMGFEDDIRTIFSFFK-----GQRQTLLF 363 (610)
T ss_pred HHHHHHHHhcCeeEEEcCcchHHHHHHHhhcc---HHHHHHhhhhhHHHHhhccchhhHHHHHHHHh-----hhhheeee
Confidence 99999999999999999999999999876654 44678999999999999999999999999984 67999999
Q ss_pred ecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh
Q psy16310 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 1075 (1493)
Q Consensus 996 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 1075 (1493)
|||+|..+..+.... +-.|..+++.......-.+.+....+....|.-+++..+..
T Consensus 364 SATMP~KIQ~FAkSA------------------------LVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQK 419 (610)
T KOG0341|consen 364 SATMPKKIQNFAKSA------------------------LVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQK 419 (610)
T ss_pred eccccHHHHHHHHhh------------------------cccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhcc
Confidence 999998877665322 22344444444333333333333445667788888888888
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 1155 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p 1155 (1493)
...++||||..+..++.+.++|--.|..+..+||+-.|++|...++.|+.|+.+|||||||++.|+|+|++.||||||+|
T Consensus 420 T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP 499 (610)
T KOG0341|consen 420 TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMP 499 (610)
T ss_pred CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCCh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhccCCCCCCCeEEEEecCC
Q psy16310 1156 RTSEIYIHRSGRTARANNEGLTLVLIESD 1184 (1493)
Q Consensus 1156 ~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 1184 (1493)
..++.|+||+|||||.|+.|.+.+|++..
T Consensus 500 ~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 500 EEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred HHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 99999999999999999999999999764
No 33
>KOG0328|consensus
Probab=100.00 E-value=1.8e-56 Score=461.33 Aligned_cols=358 Identities=29% Similarity=0.516 Sum_probs=296.1
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
...+|++.||++.++++++..||++|+.+|+.|||. +..|+|+|++|..|+|||.+|.+.+++.+.
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~-IlkGrdViaQaqSGTGKTa~~si~vlq~~d------------- 90 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQ-ILKGRDVIAQAQSGTGKTATFSISVLQSLD------------- 90 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhh-hhcccceEEEecCCCCceEEEEeeeeeecc-------------
Confidence 456799999999999999999999999999999995 558899999999999999999999887652
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
-..+...+|||+||||||.|+.+++..++.++++.+..+.||.+..+....+..
T Consensus 91 --------------------------~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~ 144 (400)
T KOG0328|consen 91 --------------------------ISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDY 144 (400)
T ss_pred --------------------------cccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcc
Confidence 223456799999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
|.+++.+|||++.+++..+.+... .+.+||+||||.||+.+|..++-.|+..+
T Consensus 145 G~hvVsGtPGrv~dmikr~~L~tr---~vkmlVLDEaDemL~kgfk~Qiydiyr~l------------------------ 197 (400)
T KOG0328|consen 145 GQHVVSGTPGRVLDMIKRRSLRTR---AVKMLVLDEADEMLNKGFKEQIYDIYRYL------------------------ 197 (400)
T ss_pred cceEeeCCCchHHHHHHhcccccc---ceeEEEeccHHHHHHhhHHHHHHHHHHhC------------------------
Confidence 999999999999999998876554 78999999999999999999999999887
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
++..|++++|||+|.++.+...-....+..
T Consensus 198 ---------p~~~Qvv~~SATlp~eilemt~kfmtdpvr----------------------------------------- 227 (400)
T KOG0328|consen 198 ---------PPGAQVVLVSATLPHEILEMTEKFMTDPVR----------------------------------------- 227 (400)
T ss_pred ---------CCCceEEEEeccCcHHHHHHHHHhcCCcee-----------------------------------------
Confidence 566899999999998876544211110000
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCc-hhhHHHHHHhhC-CCc
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQH-PGR 546 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~ 546 (1493)
++...+... ...+..+++...... |+..|+.+-... -.+
T Consensus 228 ilvkrdelt---------------------------------------lEgIKqf~v~ve~EewKfdtLcdLYd~LtItQ 268 (400)
T KOG0328|consen 228 ILVKRDELT---------------------------------------LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQ 268 (400)
T ss_pred EEEecCCCc---------------------------------------hhhhhhheeeechhhhhHhHHHHHhhhhehhe
Confidence 000000000 000011111111111 233333322221 258
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChH
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~ 626 (1493)
++|||||+..+.+|.+.+...++.+..+||+|++++|..++..||+|+.+||++|||.+||+|+|.|++|||||+|.+.+
T Consensus 269 avIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre 348 (400)
T KOG0328|consen 269 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRE 348 (400)
T ss_pred EEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
.||||+||.||.|+.|.++.|+..+|+..+..++.+
T Consensus 349 ~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~ 384 (400)
T KOG0328|consen 349 LYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQY 384 (400)
T ss_pred HHhhhhccccccCCcceEEEEecHHHHHHHHHHHHH
Confidence 999999999999999999999999999887777543
No 34
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-55 Score=546.15 Aligned_cols=371 Identities=30% Similarity=0.473 Sum_probs=313.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++|+|++.++++|.+.||..|||+|.++||. +..|+|++++||||||||++|++|++++++.....
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~-~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~---------- 77 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPV-ALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL---------- 77 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc----------
Confidence 4699999999999999999999999999999995 55889999999999999999999999988642100
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
.......+++|||+||+|||.|+++.+..++...++++..++||.....+...+..++
T Consensus 78 ----------------------~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~ 135 (572)
T PRK04537 78 ----------------------ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGV 135 (572)
T ss_pred ----------------------cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCC
Confidence 0011234689999999999999999999999999999999999999999888888889
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|||+||++|++++..... ..+..+++|||||||+|++++|...+..++..++.. ..+|+++||||++..+....
T Consensus 136 dIiV~TP~rL~~~l~~~~~--~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~---~~~q~ll~SATl~~~v~~l~ 210 (572)
T PRK04537 136 DVIIATPGRLIDYVKQHKV--VSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER---GTRQTLLFSATLSHRVLELA 210 (572)
T ss_pred CEEEECHHHHHHHHHhccc--cchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc---cCceEEEEeCCccHHHHHHH
Confidence 9999999999999876432 246688999999999999999999999999887421 36899999999997765544
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecc
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNS 1086 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s 1086 (1493)
... +..+..+.+.........+.+.++.+....+...+..++... ..++||||+|
T Consensus 211 ~~~------------------------l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt 266 (572)
T PRK04537 211 YEH------------------------MNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNT 266 (572)
T ss_pred HHH------------------------hcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCC
Confidence 221 112222222222223344566666667777777777777654 5689999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHh
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~G 1166 (1493)
+..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|||||+|.+.++|+||+|
T Consensus 267 ~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiG 346 (572)
T PRK04537 267 KAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIG 346 (572)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1167 R~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
||||.|+.|.|++|+.+.+...+..+.+.+...+
T Consensus 347 RaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~ 380 (572)
T PRK04537 347 RTARLGEEGDAISFACERYAMSLPDIEAYIEQKI 380 (572)
T ss_pred ccccCCCCceEEEEecHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999888888888776554
No 35
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4e-55 Score=540.66 Aligned_cols=362 Identities=35% Similarity=0.559 Sum_probs=314.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
+.+|++++|++.++++|..+||.+|||+|.+|||. +..|+|++++||||||||++|++|+++++...
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~-~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------------ 69 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPA-ILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------------ 69 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------------
Confidence 45799999999999999999999999999999995 55789999999999999999999999887321
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhcC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
...+++|||+||+|||.|+++.++.++... ++++..++||.+...+...+..
T Consensus 70 ---------------------------~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~ 122 (460)
T PRK11776 70 ---------------------------RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEH 122 (460)
T ss_pred ---------------------------cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcC
Confidence 234579999999999999999999988765 7999999999999999999999
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+++|+|+|||+|.+++.++.. .+.++++|||||||+|++++|...+..++..+ +..+|+++||||++..+..
T Consensus 123 ~~~IvV~Tp~rl~~~l~~~~~---~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~-----~~~~q~ll~SAT~~~~~~~ 194 (460)
T PRK11776 123 GAHIIVGTPGRILDHLRKGTL---DLDALNTLVLDEADRMLDMGFQDAIDAIIRQA-----PARRQTLLFSATYPEGIAA 194 (460)
T ss_pred CCCEEEEChHHHHHHHHcCCc---cHHHCCEEEEECHHHHhCcCcHHHHHHHHHhC-----CcccEEEEEEecCcHHHHH
Confidence 999999999999999987654 36689999999999999999999999999887 4678999999999977655
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEe
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFC 1084 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~ 1084 (1493)
..... +..+..+.+.... ....+.+.++.+....+...+..++... ++++||||
T Consensus 195 l~~~~------------------------~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~ 249 (460)
T PRK11776 195 ISQRF------------------------QRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFC 249 (460)
T ss_pred HHHHh------------------------cCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEE
Confidence 44221 1223333332222 2334667777777777888888877654 56899999
Q ss_pred cchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHH
Q psy16310 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr 1164 (1493)
+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|++++|||||+|.+..+|+||
T Consensus 250 ~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR 329 (460)
T PRK11776 250 NTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHR 329 (460)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCC
Q psy16310 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201 (1493)
Q Consensus 1165 ~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~ 1201 (1493)
+|||||+|+.|.|++|+.+.|...+..+.+.++..+.
T Consensus 330 ~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~ 366 (460)
T PRK11776 330 IGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLN 366 (460)
T ss_pred cccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999888888887766543
No 36
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5e-55 Score=536.53 Aligned_cols=366 Identities=31% Similarity=0.534 Sum_probs=312.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
+|++|+|++.++++|.++||..|||+|.++||. +..++|++++||||||||++|++|+++.+......
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~-il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~----------- 69 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPA-VLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH----------- 69 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-----------
Confidence 589999999999999999999999999999995 55789999999999999999999999988543110
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
.......++|||+||++||.|+++.+..+..+.++++..++||.+...+...+...++
T Consensus 70 ----------------------~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 127 (456)
T PRK10590 70 ----------------------AKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127 (456)
T ss_pred ----------------------cccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCc
Confidence 0112346899999999999999999999999999999999999999988888888999
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+|+||++|++++..... .+.++++|||||||+|++++|...+..++..+ +..+|+++||||++..+.....
T Consensus 128 IiV~TP~rL~~~~~~~~~---~l~~v~~lViDEah~ll~~~~~~~i~~il~~l-----~~~~q~l~~SAT~~~~~~~l~~ 199 (456)
T PRK10590 128 VLVATPGRLLDLEHQNAV---KLDQVEILVLDEADRMLDMGFIHDIRRVLAKL-----PAKRQNLLFSATFSDDIKALAE 199 (456)
T ss_pred EEEEChHHHHHHHHcCCc---ccccceEEEeecHHHHhccccHHHHHHHHHhC-----CccCeEEEEeCCCcHHHHHHHH
Confidence 999999999999876553 46789999999999999999999999998877 4678999999999976655442
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecch
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSI 1087 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~ 1087 (1493)
.. +..+..+.+.........+.+.+..+....+...+..++... ..++||||+++
T Consensus 200 ~~------------------------~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~ 255 (456)
T PRK10590 200 KL------------------------LHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTK 255 (456)
T ss_pred HH------------------------cCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcH
Confidence 21 122223333322333444555556666666666666655543 46899999999
Q ss_pred hhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhc
Q psy16310 1088 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167 (1493)
Q Consensus 1088 ~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR 1167 (1493)
..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++||||++|.+..+|+||+||
T Consensus 256 ~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GR 335 (456)
T PRK10590 256 HGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGR 335 (456)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1168 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1168 ~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
|||+|..|.+++|+.+.|...+..+.+.+...+
T Consensus 336 aGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 336 TGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred cccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999988877654
No 37
>KOG0326|consensus
Probab=100.00 E-value=3.9e-56 Score=466.19 Aligned_cols=355 Identities=30% Similarity=0.508 Sum_probs=305.0
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
.-.+|+++.|.+.++..+.+.||++|+|+|.++||.+| .|+|+++.|..|+|||.+|++|+++.+.
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid------------- 148 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKID------------- 148 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcC-------------
Confidence 34579999999999999999999999999999999665 7899999999999999999999998873
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
.......++|++||||||.|+.+.+.++++++++++...+||++..+..-.+..
T Consensus 149 --------------------------~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~ 202 (459)
T KOG0326|consen 149 --------------------------PKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQ 202 (459)
T ss_pred --------------------------ccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecC
Confidence 224557899999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.++++|+||||+++++..+-.. ++++.++|+||||.|++..|.+.++.++..+
T Consensus 203 ~VH~~vgTPGRIlDL~~KgVa~---ls~c~~lV~DEADKlLs~~F~~~~e~li~~l------------------------ 255 (459)
T KOG0326|consen 203 TVHLVVGTPGRILDLAKKGVAD---LSDCVILVMDEADKLLSVDFQPIVEKLISFL------------------------ 255 (459)
T ss_pred ceEEEEcCChhHHHHHhccccc---chhceEEEechhhhhhchhhhhHHHHHHHhC------------------------
Confidence 9999999999999999877554 5589999999999999999999999999887
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
+..+|++++|||.|-.+..+...- ...|..+++.....
T Consensus 256 ---------P~~rQillySATFP~tVk~Fm~~~------------------------l~kPy~INLM~eLt--------- 293 (459)
T KOG0326|consen 256 ---------PKERQILLYSATFPLTVKGFMDRH------------------------LKKPYEINLMEELT--------- 293 (459)
T ss_pred ---------CccceeeEEecccchhHHHHHHHh------------------------ccCcceeehhhhhh---------
Confidence 556899999999998776655311 11222222221111
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcE
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 547 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~ 547 (1493)
...+.+++.+.....|...|..++... -.++
T Consensus 294 ------------------------------------------------l~GvtQyYafV~e~qKvhCLntLfskLqINQs 325 (459)
T KOG0326|consen 294 ------------------------------------------------LKGVTQYYAFVEERQKVHCLNTLFSKLQINQS 325 (459)
T ss_pred ------------------------------------------------hcchhhheeeechhhhhhhHHHHHHHhcccce
Confidence 122334444555566666666555443 3689
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||||...++.|++.+..+|+++..+|+.|.|..|.+++..|++|.++.|||||.+.||||+++|++|||||+|.+.++
T Consensus 326 IIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEt 405 (459)
T KOG0326|consen 326 IIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAET 405 (459)
T ss_pred EEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|+||+||+||.|..|.++.|++-+|......++
T Consensus 406 YLHRIGRsGRFGhlGlAInLityedrf~L~~IE 438 (459)
T KOG0326|consen 406 YLHRIGRSGRFGHLGLAINLITYEDRFNLYRIE 438 (459)
T ss_pred HHHHccCCccCCCcceEEEEEehhhhhhHHHHH
Confidence 999999999999999999999988876666553
No 38
>KOG0339|consensus
Probab=100.00 E-value=7.7e-55 Score=481.65 Aligned_cols=369 Identities=31% Similarity=0.513 Sum_probs=322.9
Q ss_pred hhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcc
Q psy16310 763 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842 (1493)
Q Consensus 763 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~ 842 (1493)
++.++..|+.++++..|+.++...-|++|||+|.+++|.++ .|+|++..|-||||||.||+.|++-+++....
T Consensus 218 ~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~e------ 290 (731)
T KOG0339|consen 218 PPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE------ 290 (731)
T ss_pred CCCCcchhhhcCchHHHHHHHhhhhcccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchhh------
Confidence 45677889999999999999999999999999999999665 67899999999999999999999999876421
Q ss_pred cCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH
Q psy16310 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~ 922 (1493)
-....++.+||||||||||.||+.++++|++..++++++++||.+..+|...
T Consensus 291 ----------------------------L~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~ 342 (731)
T KOG0339|consen 291 ----------------------------LKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKE 342 (731)
T ss_pred ----------------------------hcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHh
Confidence 1335788999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
|..++.|||||||||++++.-... ++.++.+|||||||+|.++||.++++.|...+ .+.+|+++||||++..
T Consensus 343 Lk~g~EivVaTPgRlid~VkmKat---n~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi-----rpdrQtllFsaTf~~k 414 (731)
T KOG0339|consen 343 LKEGAEIVVATPGRLIDMVKMKAT---NLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI-----RPDRQTLLFSATFKKK 414 (731)
T ss_pred hhcCCeEEEechHHHHHHHHhhcc---cceeeeEEEEechhhhhccccHHHHHHHHhhc-----CCcceEEEeeccchHH
Confidence 999999999999999999976553 56689999999999999999999999999988 4889999999999977
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEeccc-chhhHHHHHHHhC--CCc
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQH--PGR 1079 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~--~~~ 1079 (1493)
+..+..-. +..|..+...........+++....|+.. .|...|...|... .|+
T Consensus 415 Ie~lard~------------------------L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gk 470 (731)
T KOG0339|consen 415 IEKLARDI------------------------LSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGK 470 (731)
T ss_pred HHHHHHHH------------------------hcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCc
Confidence 76654322 22333332223334455677777777665 4555665555543 579
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChh
Q psy16310 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159 (1493)
Q Consensus 1080 ~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~ 1159 (1493)
+|||+.-+..++.++..|...++++..+||+|.|.+|.+++..|+.+...||||||+++||+|||++..|||||+-.+++
T Consensus 471 vlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardId 550 (731)
T KOG0339|consen 471 VLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDID 550 (731)
T ss_pred EEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
.|.||+||+||+|..|.+++++++.|....-.+.+.|+.
T Consensus 551 ththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~ 589 (731)
T KOG0339|consen 551 THTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEG 589 (731)
T ss_pred HHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhh
Confidence 999999999999999999999999999888878777754
No 39
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.5e-54 Score=536.65 Aligned_cols=366 Identities=30% Similarity=0.489 Sum_probs=297.9
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 147 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
+.++.+|+++++++.++++|.++||.+|||+|.++|| .++.|+|+|++||||||||++|+||++.++.....
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip-~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~------- 197 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWP-IALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL------- 197 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-------
Confidence 3456789999999999999999999999999999999 55578999999999999999999999988854210
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
.....++.+|||+|||+||.|+.+.+..++...++++.+++|+.....+...+
T Consensus 198 ---------------------------~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l 250 (545)
T PTZ00110 198 ---------------------------LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL 250 (545)
T ss_pred ---------------------------ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH
Confidence 01134678999999999999999999999988899999999999998888888
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
..+++|+|+||++|.+++..... .|.++++|||||||+|++++|..++..|+..+
T Consensus 251 ~~~~~IlVaTPgrL~d~l~~~~~---~l~~v~~lViDEAd~mld~gf~~~i~~il~~~---------------------- 305 (545)
T PTZ00110 251 RRGVEILIACPGRLIDFLESNVT---NLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI---------------------- 305 (545)
T ss_pred HcCCCEEEECHHHHHHHHHcCCC---ChhhCcEEEeehHHhhhhcchHHHHHHHHHhC----------------------
Confidence 89999999999999999987654 35689999999999999999999999998766
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
.+.+|+++||||+|..+..+...... ..+..+... ...
T Consensus 306 -----------~~~~q~l~~SAT~p~~v~~l~~~l~~-----------------------~~~v~i~vg-~~~------- 343 (545)
T PTZ00110 306 -----------RPDRQTLMWSATWPKEVQSLARDLCK-----------------------EEPVHVNVG-SLD------- 343 (545)
T ss_pred -----------CCCCeEEEEEeCCCHHHHHHHHHHhc-----------------------cCCEEEEEC-CCc-------
Confidence 34479999999999876554421100 000000000 000
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh---C
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---H 543 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~ 543 (1493)
......+......+....|...|..++.. .
T Consensus 344 -----------------------------------------------l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~ 376 (545)
T PTZ00110 344 -----------------------------------------------LTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRD 376 (545)
T ss_pred -----------------------------------------------cccCCCeeEEEEEEechhHHHHHHHHHHHhccc
Confidence 00000011111222233445555555544 4
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCC
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~ 623 (1493)
..++||||+++..|+.|+..|...++.+..+||+|++.+|..+++.|++|+.+|||||++++||||||+|++||+||+|.
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~ 456 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPN 456 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 624 s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
++.+|+||+|||||+|+.|.|++|+++++......+..
T Consensus 457 s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 457 QIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred CHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 99999999999999999999999999998776666543
No 40
>KOG0336|consensus
Probab=100.00 E-value=3.3e-55 Score=472.44 Aligned_cols=365 Identities=31% Similarity=0.516 Sum_probs=302.5
Q ss_pred ccccccc-ccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 148 VQMAEWV-KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 148 ~~~~~f~-~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
.+..+|+ .|+-.+.++..+.+.||.+|||||+++|| +++.|.|+|++|.||+|||++|++|.+-|+.....
T Consensus 216 nP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWP-I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~------- 287 (629)
T KOG0336|consen 216 NPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWP-ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK------- 287 (629)
T ss_pred CCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccc-eeecCcceEEEEecCCCcCHHHhccceeeeeccch-------
Confidence 3445565 46788999999999999999999999999 66789999999999999999999999888754221
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
......++.+|+++|||+||.|+.-.+..+. +.+++..|++||.+...+...+
T Consensus 288 --------------------------~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~l 340 (629)
T KOG0336|consen 288 --------------------------RREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDL 340 (629)
T ss_pred --------------------------hhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHH
Confidence 1124567889999999999999988887764 5689999999999999999999
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
.++.+|+|+|||+|.++...+.++ |.+|.+||+||||+||+|+|.++++.|+-.+
T Consensus 341 krgveiiiatPgrlndL~~~n~i~---l~siTYlVlDEADrMLDMgFEpqIrkilldi---------------------- 395 (629)
T KOG0336|consen 341 KRGVEIIIATPGRLNDLQMDNVIN---LASITYLVLDEADRMLDMGFEPQIRKILLDI---------------------- 395 (629)
T ss_pred hcCceEEeeCCchHhhhhhcCeee---eeeeEEEEecchhhhhcccccHHHHHHhhhc----------------------
Confidence 999999999999999998877665 4589999999999999999999999998665
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
.+.+|+++.|||+|+.+..+....... +-++ +.+.+.
T Consensus 396 -----------RPDRqtvmTSATWP~~VrrLa~sY~Ke------------------------p~~v-~vGsLd------- 432 (629)
T KOG0336|consen 396 -----------RPDRQTVMTSATWPEGVRRLAQSYLKE------------------------PMIV-YVGSLD------- 432 (629)
T ss_pred -----------CCcceeeeecccCchHHHHHHHHhhhC------------------------ceEE-Eecccc-------
Confidence 456899999999999887665321111 0000 000000
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC--C
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--P 544 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~ 544 (1493)
+.....+.+..++.....|...+..++..+ .
T Consensus 433 -----------------------------------------------L~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~n 465 (629)
T KOG0336|consen 433 -----------------------------------------------LVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSN 465 (629)
T ss_pred -----------------------------------------------eeeeeeeeeeEEecccHHHHHHHHHHHHhcCCC
Confidence 000112223334445556666666666655 4
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s 624 (1493)
.++||||.+...|..|+.-|...|+....+||+-.|.+|...++.|++|.++||||||+++||||+|+|+||+|||+|.+
T Consensus 466 dKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~n 545 (629)
T KOG0336|consen 466 DKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRN 545 (629)
T ss_pred ceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 625 SEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 625 ~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
++.|+||+|||||+|+.|.+++|++-.|......|...
T Consensus 546 IeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 546 IEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred HHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 99999999999999999999999999998887776543
No 41
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.3e-54 Score=526.56 Aligned_cols=362 Identities=31% Similarity=0.485 Sum_probs=295.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|++++|++.++++|...||..|||+|.++|| .+..|+|++++||||||||++|++|+++++.......
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip-~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~--------- 77 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALP-LTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE--------- 77 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc---------
Confidence 479999999999999999999999999999999 5568899999999999999999999999986532110
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
.....++++|||+|||+||.|+++.+..++...++++..++||.....+...+..++
T Consensus 78 -----------------------~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 134 (423)
T PRK04837 78 -----------------------DRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 134 (423)
T ss_pred -----------------------ccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCC
Confidence 011345789999999999999999999999999999999999999888888888889
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||++|++++..+... +.++.+|||||||+|++++|...+..++..+..
T Consensus 135 ~IlV~TP~~l~~~l~~~~~~---l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~------------------------ 187 (423)
T PRK04837 135 DILIGTTGRLIDYAKQNHIN---LGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPP------------------------ 187 (423)
T ss_pred CEEEECHHHHHHHHHcCCcc---cccccEEEEecHHHHhhcccHHHHHHHHHhCCC------------------------
Confidence 99999999999999876554 558999999999999999999999988876632
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
...++.++||||++..+..+...... .+..+.+....
T Consensus 188 -------~~~~~~~l~SAT~~~~~~~~~~~~~~------------------------~p~~i~v~~~~------------ 224 (423)
T PRK04837 188 -------ANQRLNMLFSATLSYRVRELAFEHMN------------------------NPEYVEVEPEQ------------ 224 (423)
T ss_pred -------ccceeEEEEeccCCHHHHHHHHHHCC------------------------CCEEEEEcCCC------------
Confidence 13467899999998766544321110 00000000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLV 549 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~II 549 (1493)
.....+......+....|...+..++... ..++||
T Consensus 225 --------------------------------------------~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lV 260 (423)
T PRK04837 225 --------------------------------------------KTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAII 260 (423)
T ss_pred --------------------------------------------cCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 00000011111222334556666666543 579999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHH
Q psy16310 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yi 629 (1493)
||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++||+||+|.++.+|+
T Consensus 261 F~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yi 340 (423)
T PRK04837 261 FANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYV 340 (423)
T ss_pred EECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 630 HRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 630 QR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
||+|||||+|+.|.|++|+++.|...+..+
T Consensus 341 qR~GR~gR~G~~G~ai~~~~~~~~~~~~~i 370 (423)
T PRK04837 341 HRIGRTGRAGASGHSISLACEEYALNLPAI 370 (423)
T ss_pred eccccccCCCCCeeEEEEeCHHHHHHHHHH
Confidence 999999999999999999999877666655
No 42
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.2e-53 Score=522.15 Aligned_cols=363 Identities=31% Similarity=0.520 Sum_probs=307.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
+|++++|++.++++|.+.||..||++|.++||.++ .|+|++++||||||||++|++|++++++....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~------------ 68 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPAL-DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR------------ 68 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhhccc------------
Confidence 59999999999999999999999999999999655 77899999999999999999999998864210
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
....+.++|||+||++||.|+++.+..++...++++..++||.....+...+..+++
T Consensus 69 -----------------------~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 125 (434)
T PRK11192 69 -----------------------RKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQD 125 (434)
T ss_pred -----------------------cCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCC
Confidence 112346899999999999999999999999999999999999999998888888999
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc-hHhHH
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS-LKNSL 1007 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~-~~~~~ 1007 (1493)
|+|+||++|++++..+.+ .+.++++|||||||+|++++|...+..+...+ +...|+++||||++.. +....
T Consensus 126 IlV~Tp~rl~~~~~~~~~---~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~-----~~~~q~~~~SAT~~~~~~~~~~ 197 (434)
T PRK11192 126 IVVATPGRLLQYIKEENF---DCRAVETLILDEADRMLDMGFAQDIETIAAET-----RWRKQTLLFSATLEGDAVQDFA 197 (434)
T ss_pred EEEEChHHHHHHHHcCCc---CcccCCEEEEECHHHHhCCCcHHHHHHHHHhC-----ccccEEEEEEeecCHHHHHHHH
Confidence 999999999999987654 35678999999999999999999999888766 3568999999999853 22222
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHHh-CCCcEEEEec
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQ-HPGRTLVFCN 1085 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~-~~~~~IVF~~ 1085 (1493)
. .+ +..+..+...........+.+.+..+.. ..+...+..++.. ..+++||||+
T Consensus 198 ~-----------------------~~-~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~ 253 (434)
T PRK11192 198 E-----------------------RL-LNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVR 253 (434)
T ss_pred H-----------------------HH-ccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 1 11 1223333333333333445555555543 4566666666655 4679999999
Q ss_pred chhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1086 s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|||||+|.+...|+||+
T Consensus 254 s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 333 (434)
T PRK11192 254 TRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRI 333 (434)
T ss_pred ChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1166 GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
|||||+|..|.+++|++..|...+.++.+.+...
T Consensus 334 GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 334 GRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred cccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988888887666543
No 43
>KOG0335|consensus
Probab=100.00 E-value=3.2e-54 Score=491.87 Aligned_cols=370 Identities=31% Similarity=0.498 Sum_probs=304.6
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
.+..|.+-.+.+.+..++...||..|||||+.+|| .+.+|+|+++||+||||||.+|++|++.+++.........
T Consensus 72 ~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip-~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~---- 146 (482)
T KOG0335|consen 72 HIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIP-IISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGE---- 146 (482)
T ss_pred CcccccccchhHHHhhccccccccCCCcceeeccc-eeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcc----
Confidence 34477778899999999999999999999999998 7889999999999999999999999999998643322111
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
......|++|||+||||||.|+++.++++....++++...+|+.+...+...+..
T Consensus 147 -------------------------~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~ 201 (482)
T KOG0335|consen 147 -------------------------SGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKR 201 (482)
T ss_pred -------------------------cCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhcc
Confidence 1112458999999999999999999999998899999999999999999999999
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
+|||+|||||+|.+++..+.+.+. ++.++|+||||+|++ ++|.++++.|+......+
T Consensus 202 gcdIlvaTpGrL~d~~e~g~i~l~---~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~------------------- 259 (482)
T KOG0335|consen 202 GCDILVATPGRLKDLIERGKISLD---NCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP------------------- 259 (482)
T ss_pred CccEEEecCchhhhhhhcceeehh---hCcEEEecchHHhhhhccccccHHHHhcccCCCC-------------------
Confidence 999999999999999998887665 788999999999999 999999999998765432
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
...+|+++||||.|..+..+...... + .
T Consensus 260 ----------~~~~qt~mFSAtfp~~iq~l~~~fl~------------------~------------------------~ 287 (482)
T KOG0335|consen 260 ----------KNNRQTLLFSATFPKEIQRLAADFLK------------------D------------------------N 287 (482)
T ss_pred ----------ccceeEEEEeccCChhhhhhHHHHhh------------------c------------------------c
Confidence 34589999999999876553321100 0 0
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCC---
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP--- 544 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--- 544 (1493)
++++ ......+....+.+....+....|...|+.+|....
T Consensus 288 yi~l-------------------------------------aV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~ 330 (482)
T KOG0335|consen 288 YIFL-------------------------------------AVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPP 330 (482)
T ss_pred ceEE-------------------------------------EEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCc
Confidence 0000 000001112223333444555566666666665321
Q ss_pred --C-----cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE
Q psy16310 545 --G-----RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617 (1493)
Q Consensus 545 --~-----~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI 617 (1493)
+ .++|||.+.+.|..|+.+|...++++..+||+.++.+|.++++.|+.|++.|||||+|++||||||+|+|||
T Consensus 331 ~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVI 410 (482)
T KOG0335|consen 331 SDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVI 410 (482)
T ss_pred ccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeE
Confidence 2 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 618 HYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 618 ~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
+||+|.+..+|+||+|||||+|+.|.++.|++..+....+.+
T Consensus 411 nyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 411 NYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred EeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 999999999999999999999999999999996665555444
No 44
>KOG0332|consensus
Probab=100.00 E-value=8.7e-54 Score=458.83 Aligned_cols=369 Identities=24% Similarity=0.440 Sum_probs=308.7
Q ss_pred CcchhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhhcCC
Q psy16310 759 NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 837 (1493)
Q Consensus 759 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~~~~ 837 (1493)
+++.+..+..+|++|+|.|+++++|+.++|..|+.||..|+|.++.. .+|+|+++..|+|||.||.|.+|.++..
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~---- 156 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP---- 156 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc----
Confidence 46677888999999999999999999999999999999999965543 4799999999999999999999988732
Q ss_pred CCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHH
Q psy16310 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE 917 (1493)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~ 917 (1493)
....|+++.|+||||||.|+.+.+.+++++.+++....+.|....
T Consensus 157 -----------------------------------~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~ 201 (477)
T KOG0332|consen 157 -----------------------------------DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK 201 (477)
T ss_pred -----------------------------------cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc
Confidence 244567999999999999999999999999999988888765221
Q ss_pred HHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEe
Q psy16310 918 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFS 996 (1493)
Q Consensus 918 ~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~S 996 (1493)
.-.. -..+|+|+|||.+.+++.. +....+..++++|+||||.|++. ||.++-..|...+ +.+.|+++||
T Consensus 202 rG~~---i~eqIviGTPGtv~Dlm~k--lk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l-----P~~~QllLFS 271 (477)
T KOG0332|consen 202 RGNK---LTEQIVIGTPGTVLDLMLK--LKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL-----PRNQQLLLFS 271 (477)
T ss_pred cCCc---chhheeeCCCccHHHHHHH--HHhhChhhceEEEecchhhhhhcccccccchhhhhhc-----CCcceEEeee
Confidence 1110 0137999999999999975 12234668999999999999865 7877777777776 4689999999
Q ss_pred cccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEeccc-chhhHHHHHHHh
Q psy16310 997 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQ 1075 (1493)
Q Consensus 997 ATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~ 1075 (1493)
||+...+..+... -+.++..+.+.........+.++++.|... +|...+..+...
T Consensus 272 ATf~e~V~~Fa~k------------------------ivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~ 327 (477)
T KOG0332|consen 272 ATFVEKVAAFALK------------------------IVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGL 327 (477)
T ss_pred chhHHHHHHHHHH------------------------hcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhh
Confidence 9998887766532 234555666666666778889999999764 566666553222
Q ss_pred -CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecC
Q psy16310 1076 -HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154 (1493)
Q Consensus 1076 -~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~ 1154 (1493)
.-++.||||.|+++|.+|+..|...|+.+..+||+|.-.+|..++++|+.|..+|||+|+|++||||++.|++|||||+
T Consensus 328 ~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydl 407 (477)
T KOG0332|consen 328 LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDL 407 (477)
T ss_pred hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCC
Confidence 2579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------ChhHHHHHHhccCCCCCCCeEEEEecCCCH-HHHHHHHHhccccC
Q psy16310 1155 PR------TSEIYIHRSGRTARANNEGLTLVLIESDEI-PLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1155 p~------s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~-~~~~~~~~~~~~~~ 1200 (1493)
|. +.+.|+||+|||||.|+.|.++.|++..+. ..+.+|.++++..+
T Consensus 408 P~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i 460 (477)
T KOG0332|consen 408 PVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKI 460 (477)
T ss_pred ccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcc
Confidence 94 689999999999999999999999988765 45557777776543
No 45
>KOG0350|consensus
Probab=100.00 E-value=1.4e-53 Score=473.35 Aligned_cols=386 Identities=30% Similarity=0.434 Sum_probs=297.4
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhhhhhc--------cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 159 PETIIRALYQKGFKTPTKIQSMVMPSALL--------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 159 ~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~--------~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
...+...+.++++++.+|+|..++|..+. .++|++|.||||||||++|+|||++.+..
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~-------------- 210 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSS-------------- 210 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHcc--------------
Confidence 34455668999999999999999985542 26799999999999999999999998843
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC-
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC- 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~- 309 (1493)
+..+..+||||+||++|+.|++++|..+....|+.|+.+.|..+...+...+.+.
T Consensus 211 ------------------------R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~ 266 (620)
T KOG0350|consen 211 ------------------------RPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDP 266 (620)
T ss_pred ------------------------CCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCC
Confidence 2345689999999999999999999999999999999999999988888777543
Q ss_pred ----CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCC--cc
Q psy16310 310 ----PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH--FP 383 (1493)
Q Consensus 310 ----~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~--~~ 383 (1493)
.||+|+|||||.++|.+.. ...|.++++|||||||+|++..|.+|+..++..+...........++.... .|
T Consensus 267 ~~~~~DIlVaTPGRLVDHl~~~k--~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~p 344 (620)
T KOG0350|consen 267 PECRIDILVATPGRLVDHLNNTK--SFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQP 344 (620)
T ss_pred CccccceEEcCchHHHHhccCCC--CcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCc
Confidence 3899999999999998532 234779999999999999999999999999987765422111111111111 11
Q ss_pred hhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccc
Q psy16310 384 ELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKT 463 (1493)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1493)
.+..-+... .....++.+.++||||++.....+..+....+....+...
T Consensus 345 t~~~e~~t~-~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~------------------------------ 393 (620)
T KOG0350|consen 345 TVLSELLTK-LGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP------------------------------ 393 (620)
T ss_pred hhhHHHHhh-cCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc------------------------------
Confidence 110000000 0223456678889999987655544333222111111000
Q ss_pred cchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC
Q psy16310 464 LTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 543 (1493)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 543 (1493)
+....+++..+.+..+.+...-+...++.++...
T Consensus 394 ----------------------------------------------~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~ 427 (620)
T KOG0350|consen 394 ----------------------------------------------LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN 427 (620)
T ss_pred ----------------------------------------------cceeeecChhhhhceeecccccchHhHHHHHHHh
Confidence 0112234445555666666667777788887766
Q ss_pred C-CcEEEEecchhhHHHHHHHHH----hcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 544 P-GRTLVFCNSISSVKRLTQLLT----MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 544 ~-~~~IIF~~s~~~a~~L~~~L~----~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
. .++|+|+++..++.+|+..|+ ..++.+..+.|+++...|.+.+++|..|.++||||||+++||||+.+|+.|||
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN 507 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN 507 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee
Confidence 4 699999999999999999997 23667777999999999999999999999999999999999999999999999
Q ss_pred ecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 619 yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
||+|.+...|+||+|||||||+.|+||++....+...+.++..
T Consensus 508 Yd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 508 YDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred cCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHH
Confidence 9999999999999999999999999999999999887777644
No 46
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.8e-53 Score=525.32 Aligned_cols=363 Identities=25% Similarity=0.428 Sum_probs=292.6
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
.++.+|+++++++.+++.|.+.||..|||+|.++||. +..|+|+|++||||||||++|++|++.++.......
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~-il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~------ 190 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPA-ALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH------ 190 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc------
Confidence 5567899999999999999999999999999999995 558899999999999999999999999886421110
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
.....++++|||+|||+||.|+.+.+..+....++++..++||.....+...+.
T Consensus 191 --------------------------~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~ 244 (518)
T PLN00206 191 --------------------------PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQ 244 (518)
T ss_pred --------------------------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhc
Confidence 011256789999999999999999999999888999999999999888888888
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.+++|+|+|||+|.+++...... +.++.+|||||||+|++++|.+++..++..+
T Consensus 245 ~~~~IiV~TPgrL~~~l~~~~~~---l~~v~~lViDEad~ml~~gf~~~i~~i~~~l----------------------- 298 (518)
T PLN00206 245 QGVELIVGTPGRLIDLLSKHDIE---LDNVSVLVLDEVDCMLERGFRDQVMQIFQAL----------------------- 298 (518)
T ss_pred CCCCEEEECHHHHHHHHHcCCcc---chheeEEEeecHHHHhhcchHHHHHHHHHhC-----------------------
Confidence 89999999999999999876443 5689999999999999999999998888654
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
+.+|+++||||+++.+..+....... +..+......
T Consensus 299 -----------~~~q~l~~SATl~~~v~~l~~~~~~~------------------------~~~i~~~~~~--------- 334 (518)
T PLN00206 299 -----------SQPQVLLFSATVSPEVEKFASSLAKD------------------------IILISIGNPN--------- 334 (518)
T ss_pred -----------CCCcEEEEEeeCCHHHHHHHHHhCCC------------------------CEEEEeCCCC---------
Confidence 13599999999998766544211100 0000000000
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC---C
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH---P 544 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~ 544 (1493)
............+....+...+..++... .
T Consensus 335 -----------------------------------------------~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~ 367 (518)
T PLN00206 335 -----------------------------------------------RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFK 367 (518)
T ss_pred -----------------------------------------------CCCcceeEEEEeccchhHHHHHHHHHHhhcccC
Confidence 00000011111222233444455555432 3
Q ss_pred CcEEEEecchhhHHHHHHHHHh-cCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTM-LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~-~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~ 623 (1493)
+++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||++++||||+|+|++||+||+|.
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~ 447 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPN 447 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCC
Confidence 6899999999999999999975 589999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 624 s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
++.+|+||+|||||+|..|.|++|+++++...+..+.
T Consensus 448 s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 448 TIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred CHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 9999999999999999999999999998876665553
No 47
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.2e-53 Score=518.63 Aligned_cols=360 Identities=31% Similarity=0.526 Sum_probs=293.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
+|++++|++.++++|.++||..|||+|.++|| .+..++|+|++||||||||++|++|+++.+......
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~-~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~----------- 69 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIP-AVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH----------- 69 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-----------
Confidence 58899999999999999999999999999999 566789999999999999999999999988542110
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
......+++|||+||++||.|+.+.+..+....++.+..++|+.+...++..+...++
T Consensus 70 ----------------------~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 127 (456)
T PRK10590 70 ----------------------AKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127 (456)
T ss_pred ----------------------cccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCc
Confidence 0122346899999999999999999999999899999999999999988888888999
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+||||++|++++...... ++++++|||||||+|++++|...+..++..+
T Consensus 128 IiV~TP~rL~~~~~~~~~~---l~~v~~lViDEah~ll~~~~~~~i~~il~~l--------------------------- 177 (456)
T PRK10590 128 VLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRMLDMGFIHDIRRVLAKL--------------------------- 177 (456)
T ss_pred EEEEChHHHHHHHHcCCcc---cccceEEEeecHHHHhccccHHHHHHHHHhC---------------------------
Confidence 9999999999998766543 5689999999999999999999999888765
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
+..+|+++||||++..+..+....... +..+.+....
T Consensus 178 ------~~~~q~l~~SAT~~~~~~~l~~~~~~~------------------------~~~i~~~~~~------------- 214 (456)
T PRK10590 178 ------PAKRQNLLFSATFSDDIKALAEKLLHN------------------------PLEIEVARRN------------- 214 (456)
T ss_pred ------CccCeEEEEeCCCcHHHHHHHHHHcCC------------------------CeEEEEeccc-------------
Confidence 344799999999997765543211100 0000000000
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcEEEE
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVF 550 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF 550 (1493)
.....+......+....+..++..++... ..++|||
T Consensus 215 -------------------------------------------~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF 251 (456)
T PRK10590 215 -------------------------------------------TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVF 251 (456)
T ss_pred -------------------------------------------ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 00000011111222223344455555433 3689999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 551 ~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
|+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++||+||+|.++.+|+|
T Consensus 252 ~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvq 331 (456)
T PRK10590 252 TRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVH 331 (456)
T ss_pred cCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 631 RSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 631 R~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
|+|||||+|..|.|++|+...|...+..++.
T Consensus 332 R~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~ 362 (456)
T PRK10590 332 RIGRTGRAAATGEALSLVCVDEHKLLRDIEK 362 (456)
T ss_pred hccccccCCCCeeEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999998887776644
No 48
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-52 Score=518.52 Aligned_cols=353 Identities=35% Similarity=0.562 Sum_probs=293.0
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
+.+|++++|++.++++|..+||..|||+|.++|| .+..|+|+|++||||||||++|++|+++++..
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~-~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~------------- 68 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLP-AILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV------------- 68 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh-------------
Confidence 3579999999999999999999999999999999 55688999999999999999999999988732
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
....+++|||+||++||.|+.+.++.++... ++++..++||.+...+...+..
T Consensus 69 --------------------------~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~ 122 (460)
T PRK11776 69 --------------------------KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEH 122 (460)
T ss_pred --------------------------ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcC
Confidence 1224579999999999999999999887654 7999999999999999999999
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+++|+|+||++|.+++..+... +.++++|||||||+|++++|...+..++..+
T Consensus 123 ~~~IvV~Tp~rl~~~l~~~~~~---l~~l~~lViDEad~~l~~g~~~~l~~i~~~~------------------------ 175 (460)
T PRK11776 123 GAHIIVGTPGRILDHLRKGTLD---LDALNTLVLDEADRMLDMGFQDAIDAIIRQA------------------------ 175 (460)
T ss_pred CCCEEEEChHHHHHHHHcCCcc---HHHCCEEEEECHHHHhCcCcHHHHHHHHHhC------------------------
Confidence 9999999999999999876554 4589999999999999999999999998776
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
+..+|+++||||+++.+..+....... +..+.....
T Consensus 176 ---------~~~~q~ll~SAT~~~~~~~l~~~~~~~------------------------~~~i~~~~~----------- 211 (460)
T PRK11776 176 ---------PARRQTLLFSATYPEGIAAISQRFQRD------------------------PVEVKVEST----------- 211 (460)
T ss_pred ---------CcccEEEEEEecCcHHHHHHHHHhcCC------------------------CEEEEECcC-----------
Confidence 345799999999998765544211100 000000000
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcE
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 547 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~ 547 (1493)
.....+....+.+....+...+..++... +.++
T Consensus 212 ----------------------------------------------~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 245 (460)
T PRK11776 212 ----------------------------------------------HDLPAIEQRFYEVSPDERLPALQRLLLHHQPESC 245 (460)
T ss_pred ----------------------------------------------CCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCce
Confidence 00001112222333344666666766554 5689
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++||+||+|.++..
T Consensus 246 lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~ 325 (460)
T PRK11776 246 VVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEV 325 (460)
T ss_pred EEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
|+||+|||||+|..|.|++|+++.|...+..+
T Consensus 326 yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i 357 (460)
T PRK11776 326 HVHRIGRTGRAGSKGLALSLVAPEEMQRANAI 357 (460)
T ss_pred hhhhcccccCCCCcceEEEEEchhHHHHHHHH
Confidence 99999999999999999999999876655544
No 49
>KOG0346|consensus
Probab=100.00 E-value=2.1e-53 Score=464.53 Aligned_cols=361 Identities=30% Similarity=0.480 Sum_probs=305.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|++++|++.+++++.+.||.+||-||+.+||.+| .|+|+++.|.||||||++|++|+++.|+......
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t~--------- 88 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--------- 88 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc---------
Confidence 579999999999999999999999999999999555 7899999999999999999999999998643221
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCC--eEEEEEEcCCCHHHHHHHhcC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP--VKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~--i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
....++.++||+||||||+|++.++..+..+.+ +++.-+..+++.......+..
T Consensus 89 ------------------------~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d 144 (569)
T KOG0346|consen 89 ------------------------DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD 144 (569)
T ss_pred ------------------------cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc
Confidence 234678899999999999999999998876654 666667777777777788888
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.++|+|+||++|+.++..+.. ..+..+++||+||||.++..||.+.+..+...+
T Consensus 145 ~pdIvV~TP~~ll~~~~~~~~--~~~~~l~~LVvDEADLllsfGYeedlk~l~~~L------------------------ 198 (569)
T KOG0346|consen 145 LPDIVVATPAKLLRHLAAGVL--EYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHL------------------------ 198 (569)
T ss_pred CCCeEEeChHHHHHHHhhccc--hhhhheeeEEechhhhhhhcccHHHHHHHHHhC------------------------
Confidence 999999999999999987764 235589999999999999999999999999887
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
++..|.++||||++.++..+-.+.. .+|.+..+.
T Consensus 199 ---------Pr~~Q~~LmSATl~dDv~~LKkL~l------------------------~nPviLkl~------------- 232 (569)
T KOG0346|consen 199 ---------PRIYQCFLMSATLSDDVQALKKLFL------------------------HNPVILKLT------------- 232 (569)
T ss_pred ---------CchhhheeehhhhhhHHHHHHHHhc------------------------cCCeEEEec-------------
Confidence 4558999999999987754432211 111111110
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC--CCc
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PGR 546 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~ 546 (1493)
......+..+.++.+.|...+|+.+++.++.-. .|+
T Consensus 233 ------------------------------------------e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gK 270 (569)
T KOG0346|consen 233 ------------------------------------------EGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGK 270 (569)
T ss_pred ------------------------------------------cccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCc
Confidence 011123456677888999889998888877543 799
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEech-----------------------
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV----------------------- 603 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv----------------------- 603 (1493)
+|||+|+.+.|.+|.-.|...|+..++++|.|+...|..+++.|..|-+.|+||||.
T Consensus 271 sliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~knd 350 (569)
T KOG0346|consen 271 SLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKND 350 (569)
T ss_pred eEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999992
Q ss_pred ------------hhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 604 ------------AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 604 ------------~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
++||||+.+|..|||||+|.++.+||||+|||||++++|.++.|+.|.+..-...+
T Consensus 351 kkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 351 KKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred cccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHH
Confidence 57999999999999999999999999999999999999999999999887755444
No 50
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.2e-52 Score=520.38 Aligned_cols=364 Identities=30% Similarity=0.474 Sum_probs=294.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|++++|++.++++|.+.||..|||+|.++|| .++.|+|+|++||||||||++|++|+++++......
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip-~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~---------- 77 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLP-VALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL---------- 77 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc----------
Confidence 369999999999999999999999999999999 566889999999999999999999999988642100
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
.......+++|||+||++||.|+++.+..++...++++..++|+.....+...+..++
T Consensus 78 ----------------------~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~ 135 (572)
T PRK04537 78 ----------------------ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGV 135 (572)
T ss_pred ----------------------cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCC
Confidence 0011234789999999999999999999999999999999999999998888888889
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|||+||++|++++..... ..+..+++|||||||+|++++|...+..++..+...
T Consensus 136 dIiV~TP~rL~~~l~~~~~--~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~----------------------- 190 (572)
T PRK04537 136 DVIIATPGRLIDYVKQHKV--VSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER----------------------- 190 (572)
T ss_pred CEEEECHHHHHHHHHhccc--cchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc-----------------------
Confidence 9999999999999875421 235588999999999999999999999998876321
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
..+|+++||||++..+..+....... +........
T Consensus 191 --------~~~q~ll~SATl~~~v~~l~~~~l~~------------------------p~~i~v~~~------------- 225 (572)
T PRK04537 191 --------GTRQTLLFSATLSHRVLELAYEHMNE------------------------PEKLVVETE------------- 225 (572)
T ss_pred --------cCceEEEEeCCccHHHHHHHHHHhcC------------------------CcEEEeccc-------------
Confidence 24699999999987665443211100 000000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLV 549 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~II 549 (1493)
......+....+.+....+...+..++... ..++||
T Consensus 226 -------------------------------------------~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LV 262 (572)
T PRK04537 226 -------------------------------------------TITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMV 262 (572)
T ss_pred -------------------------------------------cccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEE
Confidence 000000111122223344555666666544 568999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHH
Q psy16310 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yi 629 (1493)
||+++..|+.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++.+|+
T Consensus 263 F~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yv 342 (572)
T PRK04537 263 FVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYV 342 (572)
T ss_pred EeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 630 QR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
||+|||||+|..|.|++|+++.+...+..++
T Consensus 343 qRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~ 373 (572)
T PRK04537 343 HRIGRTARLGEEGDAISFACERYAMSLPDIE 373 (572)
T ss_pred hhhcccccCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999988776655553
No 51
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.7e-52 Score=521.36 Aligned_cols=353 Identities=33% Similarity=0.529 Sum_probs=290.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|.+++|++.++++|.++||..|||+|.++|| .+..++|+|++||||||||++|++|+++.+..
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~-~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-------------- 70 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIP-HLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-------------- 70 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh--------------
Confidence 458999999999999999999999999999999 45688999999999999999999999987742
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
...++++|||+||++||.|+++.+..+.... ++.+..++||.+...+...+..+
T Consensus 71 -------------------------~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~ 125 (629)
T PRK11634 71 -------------------------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 (629)
T ss_pred -------------------------ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCC
Confidence 1234689999999999999999999887664 79999999999999998888889
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|||+||++|.+++....+. ++++.+|||||||+|++++|...+..|+..+
T Consensus 126 ~~IVVgTPgrl~d~l~r~~l~---l~~l~~lVlDEAd~ml~~gf~~di~~Il~~l------------------------- 177 (629)
T PRK11634 126 PQIVVGTPGRLLDHLKRGTLD---LSKLSGLVLDEADEMLRMGFIEDVETIMAQI------------------------- 177 (629)
T ss_pred CCEEEECHHHHHHHHHcCCcc---hhhceEEEeccHHHHhhcccHHHHHHHHHhC-------------------------
Confidence 999999999999999876554 5589999999999999999999999998776
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+..+|+++||||+|..+..+...... .+..+.+..
T Consensus 178 --------p~~~q~llfSAT~p~~i~~i~~~~l~------------------------~~~~i~i~~------------- 212 (629)
T PRK11634 178 --------PEGHQTALFSATMPEAIRRITRRFMK------------------------EPQEVRIQS------------- 212 (629)
T ss_pred --------CCCCeEEEEEccCChhHHHHHHHHcC------------------------CCeEEEccC-------------
Confidence 34579999999999876544321110 000000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcEE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTL 548 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~I 548 (1493)
.......+...++......|...|..++... ..++|
T Consensus 213 -------------------------------------------~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~I 249 (629)
T PRK11634 213 -------------------------------------------SVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAI 249 (629)
T ss_pred -------------------------------------------ccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEE
Confidence 0000001111122222334555666666554 46899
Q ss_pred EEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHH
Q psy16310 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628 (1493)
Q Consensus 549 IF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~y 628 (1493)
|||+|+..+..|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++..|
T Consensus 250 VF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~y 329 (629)
T PRK11634 250 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESY 329 (629)
T ss_pred EEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 629 IHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 629 iQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
+||+|||||+|+.|.|++|+++.|...+..+
T Consensus 330 vqRiGRtGRaGr~G~ai~~v~~~e~~~l~~i 360 (629)
T PRK11634 330 VHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 (629)
T ss_pred HHHhccccCCCCcceEEEEechHHHHHHHHH
Confidence 9999999999999999999988776554444
No 52
>KOG0334|consensus
Probab=100.00 E-value=7.5e-53 Score=511.45 Aligned_cols=372 Identities=31% Similarity=0.532 Sum_probs=332.4
Q ss_pred hhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 762 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
..+.++.+|.+.|++..++..++++||..|||||.+||| ++..|+|+|++|.||||||++|+||++.++.....
T Consensus 359 ~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP-~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~----- 432 (997)
T KOG0334|consen 359 ECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIP-AIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP----- 432 (997)
T ss_pred CCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcc-hhccCcceEEeeccCCccchhhhcchhhhhhcCCC-----
Confidence 356778999999999999999999999999999999999 67789999999999999999999999977754321
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~ 921 (1493)
.....||.+||++|||+||.||++.++.|.+.+++++++++||.....|..
T Consensus 433 -----------------------------~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qia 483 (997)
T KOG0334|consen 433 -----------------------------LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIA 483 (997)
T ss_pred -----------------------------hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHH
Confidence 133558999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 922 ~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
.+++++.|+||||||+++++-.+...+..+.++.++|+||||+|++++|.+++..|+..+ .+.+|+++||||+|.
T Consensus 484 elkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nl-----rpdrQtvlfSatfpr 558 (997)
T KOG0334|consen 484 ELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNL-----RPDRQTVLFSATFPR 558 (997)
T ss_pred HHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhc-----chhhhhhhhhhhhhH
Confidence 999999999999999999998777777788888899999999999999999999999998 478999999999998
Q ss_pred chHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec-ccchhhHHHHHHHhC--CC
Q psy16310 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFILQH--PG 1078 (1493)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~--~~ 1078 (1493)
.+....... +..|..+.+.........+.+....|. ..+|+..|..+|..+ .+
T Consensus 559 ~m~~la~~v------------------------l~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~ 614 (997)
T KOG0334|consen 559 SMEALARKV------------------------LKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDG 614 (997)
T ss_pred HHHHHHHHh------------------------hcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcC
Confidence 865544211 113333444444555667788888888 788999998888654 78
Q ss_pred cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCCh
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~ 1158 (1493)
++||||.....|+.+...|...|+.+..+||+.+|.+|..+++.|++|.+.+||||++++||+|++++.+|||||+|...
T Consensus 615 ~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~ 694 (997)
T KOG0334|consen 615 KTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHY 694 (997)
T ss_pred CEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcc
Q psy16310 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197 (1493)
Q Consensus 1159 ~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~ 1197 (1493)
+.|+||+|||||+|+.|.|++|++|.+......|.+.+.
T Consensus 695 edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~ 733 (997)
T KOG0334|consen 695 EDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALE 733 (997)
T ss_pred HHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHH
Confidence 999999999999999999999999988888888888773
No 53
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-51 Score=510.91 Aligned_cols=371 Identities=34% Similarity=0.534 Sum_probs=309.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
...|.+++|++.++++|.+.||..|||+|.++|+ .+..|+|+|++||||||||++|++|+++.++......
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~-~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~-------- 156 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLG-YTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK-------- 156 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc--------
Confidence 3568899999999999999999999999999999 4668899999999999999999999999886532100
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc-C
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-K 925 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~ 925 (1493)
......+++|||+||++||.|+++.++.+.+..++++..++||.....+...+. .
T Consensus 157 ------------------------~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~ 212 (475)
T PRK01297 157 ------------------------ERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR 212 (475)
T ss_pred ------------------------ccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCC
Confidence 011234689999999999999999999999999999999999988877766664 5
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
.++|+|+||++|++++..+.. .+.++++|||||||++++++|...+..++..+.. ...+|+++||||++..+..
T Consensus 213 ~~~Iiv~TP~~Ll~~~~~~~~---~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~---~~~~q~i~~SAT~~~~~~~ 286 (475)
T PRK01297 213 FCDILVATPGRLLDFNQRGEV---HLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPR---KEERQTLLFSATFTDDVMN 286 (475)
T ss_pred CCCEEEECHHHHHHHHHcCCc---ccccCceEEechHHHHHhcccHHHHHHHHHhCCC---CCCceEEEEEeecCHHHHH
Confidence 689999999999998876553 4668899999999999999999999999887632 2357999999999876655
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEe
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFC 1084 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~ 1084 (1493)
..... ...+..+.+.........+.+....+...++...+..++... ..++||||
T Consensus 287 ~~~~~------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~ 342 (475)
T PRK01297 287 LAKQW------------------------TTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFA 342 (475)
T ss_pred HHHHh------------------------ccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEe
Confidence 43221 112233333322223334445555566666777777766654 46899999
Q ss_pred cchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHH
Q psy16310 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr 1164 (1493)
+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+|++|.+..+|+||
T Consensus 343 ~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr 422 (475)
T PRK01297 343 NRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHR 422 (475)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1165 ~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
+||+||.|+.|.+++|+.++|...+..+.+.++..+
T Consensus 423 ~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 423 IGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred hCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998888888888877654
No 54
>KOG0341|consensus
Probab=100.00 E-value=7.1e-54 Score=458.95 Aligned_cols=358 Identities=30% Similarity=0.510 Sum_probs=297.9
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 147 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
+.++.+|.+...+..+++.|++.|+.+|||||.+-+| .++.|+|+|..|-||||||++|+||++-..+....
T Consensus 166 pPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlP-vvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~------- 237 (610)
T KOG0341|consen 166 PPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLP-VVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM------- 237 (610)
T ss_pred CCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcc-eEeecCceeeEEeecCCceEEEeHHHHHHHHHHHh-------
Confidence 4567789999999999999999999999999999999 55689999999999999999999998755443211
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC------CCCeEEEEEEcCCCHH
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK------YTPVKVACVVGGMSTE 300 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~------~~~i~v~~~~G~~~~~ 300 (1493)
+......-+|..||+||+|+||.|.+..+..+.. ...++..+..||.+..
T Consensus 238 ------------------------~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~ 293 (610)
T KOG0341|consen 238 ------------------------MLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVR 293 (610)
T ss_pred ------------------------cCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHH
Confidence 1122345678999999999999999988877643 2347888999999999
Q ss_pred HHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccC
Q psy16310 301 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380 (1493)
Q Consensus 301 ~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~ 380 (1493)
.+......+++|+|+|||||.++|......++ -+++|++||||+|+++||.+.++.|+..+.
T Consensus 294 eql~~v~~GvHivVATPGRL~DmL~KK~~sLd---~CRyL~lDEADRmiDmGFEddir~iF~~FK--------------- 355 (610)
T KOG0341|consen 294 EQLDVVRRGVHIVVATPGRLMDMLAKKIMSLD---ACRYLTLDEADRMIDMGFEDDIRTIFSFFK--------------- 355 (610)
T ss_pred HHHHHHhcCeeEEEcCcchHHHHHHHhhccHH---HHHHhhhhhHHHHhhccchhhHHHHHHHHh---------------
Confidence 99999999999999999999999988766554 689999999999999999999999998874
Q ss_pred CcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcc
Q psy16310 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460 (1493)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1493)
..+|+++||||+|..+..+.+...-.+ ..+++...
T Consensus 356 ------------------~QRQTLLFSATMP~KIQ~FAkSALVKP------------------------vtvNVGRA--- 390 (610)
T KOG0341|consen 356 ------------------GQRQTLLFSATMPKKIQNFAKSALVKP------------------------VTVNVGRA--- 390 (610)
T ss_pred ------------------hhhheeeeeccccHHHHHHHHhhcccc------------------------eEEecccc---
Confidence 348999999999988877664322111 11111000
Q ss_pred ccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH
Q psy16310 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540 (1493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 540 (1493)
....-.+.+...+.....|.-+|+.+|
T Consensus 391 -----------------------------------------------------GAAsldViQevEyVkqEaKiVylLeCL 417 (610)
T KOG0341|consen 391 -----------------------------------------------------GAASLDVIQEVEYVKQEAKIVYLLECL 417 (610)
T ss_pred -----------------------------------------------------cccchhHHHHHHHHHhhhhhhhHHHHh
Confidence 000000001111223456777888999
Q ss_pred hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec
Q psy16310 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 541 ~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd 620 (1493)
.....++||||....++..+.++|-..|+.+..+||+-.|.+|...++.|+.|+..|||||||++.|+|+|++.||||||
T Consensus 418 QKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyD 497 (610)
T KOG0341|consen 418 QKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYD 497 (610)
T ss_pred ccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 621 ~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
+|..++.|+||+|||||.|+.|.+.+|++..-
T Consensus 498 MP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 498 MPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred ChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 99999999999999999999999999997753
No 55
>KOG0350|consensus
Probab=100.00 E-value=9.5e-52 Score=458.74 Aligned_cols=386 Identities=30% Similarity=0.463 Sum_probs=309.7
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHHHhhc--------cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchh
Q psy16310 778 TIIRALYQKGFKTPTKIQSMVMPSALL--------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 849 (1493)
Q Consensus 778 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~--------~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 849 (1493)
.+.+.+..++++...|+|..++|.++. .++|+++.||||||||++|.|||++.+...
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R--------------- 211 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR--------------- 211 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC---------------
Confidence 344559999999999999999997653 257999999999999999999999988432
Q ss_pred HHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC-CC-
Q psy16310 850 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK-CP- 927 (1493)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~-~~- 927 (1493)
..+..+||||+||++|+.|++.+|..+....++.|+.+.|..+.......|.. .+
T Consensus 212 -----------------------~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~ 268 (620)
T KOG0350|consen 212 -----------------------PVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPE 268 (620)
T ss_pred -----------------------CccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCc
Confidence 23447999999999999999999999999999999999998888777666653 33
Q ss_pred ---cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhccc--------------------
Q psy16310 928 ---HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT-------------------- 984 (1493)
Q Consensus 928 ---~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~-------------------- 984 (1493)
||+|+|||||.++|.... ...|.+++++||||||+|++..|..++..++..+...
T Consensus 269 ~~~DIlVaTPGRLVDHl~~~k--~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~ 346 (620)
T KOG0350|consen 269 CRIDILVATPGRLVDHLNNTK--SFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTV 346 (620)
T ss_pred cccceEEcCchHHHHhccCCC--CcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchh
Confidence 899999999999997522 2457899999999999999998888877776655321
Q ss_pred ---------CCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecc----ccccccc
Q psy16310 985 ---------ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT----EKIGITK 1051 (1493)
Q Consensus 985 ---------~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~ 1051 (1493)
...++.+.++||||++..-.... .+.+..|..+.+. .....+.
T Consensus 347 ~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~------------------------~l~l~~Prl~~v~~~~~~ryslp~ 402 (620)
T KOG0350|consen 347 LSELLTKLGKLYPPLWKLVFSATLSQDPSKLK------------------------DLTLHIPRLFHVSKPLIGRYSLPS 402 (620)
T ss_pred hHHHHhhcCCcCchhHhhhcchhhhcChHHHh------------------------hhhcCCCceEEeecccceeeecCh
Confidence 00122345566666654333222 1233344433333 3455677
Q ss_pred cceeeEEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHH----hcCCCccccccCCCHHHHHHHHHHHhcC
Q psy16310 1052 TLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLT----MLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126 (1493)
Q Consensus 1052 ~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~m~~~~R~~~~~~F~~g 1126 (1493)
.+.+..+.+....+...++.++... ..++|+|+++.+.+.+++..|+ ..+..+..+.|++....|.+.++.|..|
T Consensus 403 ~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g 482 (620)
T KOG0350|consen 403 SLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG 482 (620)
T ss_pred hhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC
Confidence 7888888888888888888888766 5689999999999999999987 3356777899999999999999999999
Q ss_pred CCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCC
Q psy16310 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206 (1493)
Q Consensus 1127 ~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p 1206 (1493)
.++||||||+++||||+.+|++|||||+|.+..+|+||+|||||+|+.|.||.++...+...|.++++........+..|
T Consensus 483 ~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~d~~~i~~ 562 (620)
T KOG0350|consen 483 DINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLWDGVEIQP 562 (620)
T ss_pred CceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcccCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876666667
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q psy16310 1207 IDESVLSLIKKRIDLAKSIEYLE 1229 (1493)
Q Consensus 1207 ~~~~~~~~i~~~~~~~~~~~~~~ 1229 (1493)
++......... .+...++.+.
T Consensus 563 ~e~~~~~~~~~--~Yt~ALEsLk 583 (620)
T KOG0350|consen 563 IEYIFIKDEDD--RYTKALESLK 583 (620)
T ss_pred cCchHHHHHHH--HHHHHHHHHH
Confidence 66655554443 3344444444
No 56
>KOG0339|consensus
Probab=100.00 E-value=4.3e-52 Score=459.89 Aligned_cols=368 Identities=30% Similarity=0.504 Sum_probs=309.4
Q ss_pred ccccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCc
Q psy16310 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 224 (1493)
Q Consensus 145 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~ 224 (1493)
.+..++..|+.++.+..|..++.+..|++|||+|.+++|.++ .|+|||..|.||||||.+|+.|++-|++...+-
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~eL---- 291 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL---- 291 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchhhh----
Confidence 345667889999999999999999999999999999999666 679999999999999999999999999753211
Q ss_pred cCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH
Q psy16310 225 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 304 (1493)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~ 304 (1493)
....+|.+||+||||+||.|++.+++++++..++++.+++||.+...|..
T Consensus 292 ------------------------------~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k 341 (731)
T KOG0339|consen 292 ------------------------------KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSK 341 (731)
T ss_pred ------------------------------cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHH
Confidence 22467899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcch
Q psy16310 305 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384 (1493)
Q Consensus 305 ~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~ 384 (1493)
.|..++.|||||||||++++.....+ ++++++|||||||+|+++||.+++..|...+
T Consensus 342 ~Lk~g~EivVaTPgRlid~VkmKatn---~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi-------------------- 398 (731)
T KOG0339|consen 342 ELKEGAEIVVATPGRLIDMVKMKATN---LSRVSYLVLDEADRMFDMGFEPQVRSIKQHI-------------------- 398 (731)
T ss_pred hhhcCCeEEEechHHHHHHHHhhccc---ceeeeEEEEechhhhhccccHHHHHHHHhhc--------------------
Confidence 99999999999999999999866554 5589999999999999999999999999887
Q ss_pred hhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcccccc
Q psy16310 385 LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 464 (1493)
Q Consensus 385 ~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1493)
.+.+|+++||||++..+..+++-...-+. ..+...++
T Consensus 399 -------------rpdrQtllFsaTf~~kIe~lard~L~dpV-------------------------rvVqg~vg----- 435 (731)
T KOG0339|consen 399 -------------RPDRQTLLFSATFKKKIEKLARDILSDPV-------------------------RVVQGEVG----- 435 (731)
T ss_pred -------------CCcceEEEeeccchHHHHHHHHHHhcCCe-------------------------eEEEeehh-----
Confidence 56689999999999887766542211000 00000000
Q ss_pred chhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHhhC
Q psy16310 465 TESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQH 543 (1493)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~ 543 (1493)
.-...+.+...+| ....|+..|..-|...
T Consensus 436 --------------------------------------------------ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f 465 (731)
T KOG0339|consen 436 --------------------------------------------------EANEDITQTVSVCPSEEKKLNWLLRHLVEF 465 (731)
T ss_pred --------------------------------------------------ccccchhheeeeccCcHHHHHHHHHHhhhh
Confidence 0000111122222 2344566666555544
Q ss_pred --CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC
Q psy16310 544 --PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621 (1493)
Q Consensus 544 --~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~ 621 (1493)
.+++|||+.-..+++.++..|...++.+..+||+|.|.+|.+++..|+.+...|||+|||++||+|||.+..||+||+
T Consensus 466 ~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ 545 (731)
T KOG0339|consen 466 SSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDF 545 (731)
T ss_pred ccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhhhh
Q psy16310 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQE 663 (1493)
Q Consensus 622 P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~~ 663 (1493)
-.++..|.||+|||||+|..|.+|+|+++.|..+.-.|-+..
T Consensus 546 ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnL 587 (731)
T KOG0339|consen 546 ARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNL 587 (731)
T ss_pred cchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHH
Confidence 999999999999999999999999999999988777764433
No 57
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.1e-51 Score=504.71 Aligned_cols=357 Identities=31% Similarity=0.510 Sum_probs=291.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
+|+++++++.+++.|..+||..|+++|.++||. +..|+|++++||||||||++|++|+++++.....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~-~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~------------ 68 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPP-ALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR------------ 68 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc------------
Confidence 589999999999999999999999999999995 4578999999999999999999999998864210
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
....++++|||+||++||.|+++.+..++...++++..++|+.....+...+..+++
T Consensus 69 -----------------------~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 125 (434)
T PRK11192 69 -----------------------RKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQD 125 (434)
T ss_pred -----------------------cCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCC
Confidence 112346899999999999999999999999999999999999999888888888899
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||++|++++....+. +.++++|||||||+|++++|...+..+...+
T Consensus 126 IlV~Tp~rl~~~~~~~~~~---~~~v~~lViDEah~~l~~~~~~~~~~i~~~~--------------------------- 175 (434)
T PRK11192 126 IVVATPGRLLQYIKEENFD---CRAVETLILDEADRMLDMGFAQDIETIAAET--------------------------- 175 (434)
T ss_pred EEEEChHHHHHHHHcCCcC---cccCCEEEEECHHHHhCCCcHHHHHHHHHhC---------------------------
Confidence 9999999999999876554 4578999999999999999999998887654
Q ss_pred ccccCCCCCceEEEEeeccchh-hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHS-LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
+...|+++||||++.. +..+..... ..+..+....
T Consensus 176 ------~~~~q~~~~SAT~~~~~~~~~~~~~~------------------------~~~~~i~~~~-------------- 211 (434)
T PRK11192 176 ------RWRKQTLLFSATLEGDAVQDFAERLL------------------------NDPVEVEAEP-------------- 211 (434)
T ss_pred ------ccccEEEEEEeecCHHHHHHHHHHHc------------------------cCCEEEEecC--------------
Confidence 2346999999999743 322221000 0000000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccc-cCchhhHHHHHHhh-CCCcEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFILQ-HPGRTL 548 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~-~~~~~I 548 (1493)
.......+......+. ...+...+..++.. ...++|
T Consensus 212 ------------------------------------------~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~l 249 (434)
T PRK11192 212 ------------------------------------------SRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSI 249 (434)
T ss_pred ------------------------------------------CcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEE
Confidence 0000000111111111 23466667777765 457999
Q ss_pred EEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHH
Q psy16310 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628 (1493)
Q Consensus 549 IF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~y 628 (1493)
|||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.+...|
T Consensus 250 VF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~y 329 (434)
T PRK11192 250 VFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTY 329 (434)
T ss_pred EEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 629 IHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 629 iQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
+||+|||||+|..|.|++|++..|...+.++.
T Consensus 330 iqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 330 LHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred hhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999988877766654
No 58
>KOG0337|consensus
Probab=100.00 E-value=1.1e-52 Score=456.96 Aligned_cols=362 Identities=36% Similarity=0.550 Sum_probs=329.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
..|..+||+..+++++.+-||..|||+|+++|| .+..++|++..|-||||||.||++|+++++...
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTip-liLe~~dvv~martgsgktaaf~ipm~e~Lk~~------------- 86 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIP-LILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH------------- 86 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhccccc-ceeeccccceeeecCCcchhhHHHHHHHHHhhc-------------
Confidence 458999999999999999999999999999999 566899999999999999999999999988432
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
...+.+++|++|||+||.|..+.++.++++.++++.+++||.+.++|+..+..++
T Consensus 87 -------------------------s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~np 141 (529)
T KOG0337|consen 87 -------------------------SQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENP 141 (529)
T ss_pred -------------------------cccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCC
Confidence 2456789999999999999999999999999999999999999999999999999
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
|||++|||++..+..... ..|+.+.|+||||||+++++||.+++..++.++ +..+|+++||||+|+.+..+.
T Consensus 142 Dii~ATpgr~~h~~vem~---l~l~sveyVVfdEadrlfemgfqeql~e~l~rl-----~~~~QTllfSatlp~~lv~fa 213 (529)
T KOG0337|consen 142 DIIIATPGRLLHLGVEMT---LTLSSVEYVVFDEADRLFEMGFQEQLHEILSRL-----PESRQTLLFSATLPRDLVDFA 213 (529)
T ss_pred CEEEecCceeeeeehhee---ccccceeeeeehhhhHHHhhhhHHHHHHHHHhC-----CCcceEEEEeccCchhhHHHH
Confidence 999999999987665433 346789999999999999999999999999998 467899999999998876654
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCC--cEEEEec
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG--RTLVFCN 1085 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~IVF~~ 1085 (1493)
. .++.+|..+.+.-...+...+...+..+...+|..+|..++....+ +++|||.
T Consensus 214 k------------------------aGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~ 269 (529)
T KOG0337|consen 214 K------------------------AGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVA 269 (529)
T ss_pred H------------------------ccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEec
Confidence 2 2455666666666666777788888899999999999999987755 8999999
Q ss_pred chhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1086 s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
|..+|+.+...|...|+.+..++|.|.+..|...+..|+.++..+||.||+++||+|||-.+.|||||+|.+...|+||+
T Consensus 270 tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRV 349 (529)
T KOG0337|consen 270 TKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRV 349 (529)
T ss_pred ccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1166 GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
||++|+|+.|.+|.||.+.+.+++..+...+++.+
T Consensus 350 gr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~ 384 (529)
T KOG0337|consen 350 GRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPL 384 (529)
T ss_pred cchhhccccceEEEEEecccchhhhhhhhhcCCce
Confidence 99999999999999999999999999998888864
No 59
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-49 Score=493.04 Aligned_cols=363 Identities=34% Similarity=0.538 Sum_probs=289.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
...|.+++|++.++++|.+.||..|+++|.++|+ .+..|+|+|+++|||||||++|++|+++.+.......
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~-~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~-------- 156 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLG-YTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK-------- 156 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc--------
Confidence 3568889999999999999999999999999998 5668899999999999999999999999886532110
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc-C
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-K 308 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~-~ 308 (1493)
......+++|||+||++||.|+++.+..+....++.+..++||.+...+...+. .
T Consensus 157 ------------------------~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~ 212 (475)
T PRK01297 157 ------------------------ERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR 212 (475)
T ss_pred ------------------------ccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCC
Confidence 001124689999999999999999999999888999999999988777766654 5
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.++|+|+||++|++++..... .|.++++|||||||++++++|...+..++..+..
T Consensus 213 ~~~Iiv~TP~~Ll~~~~~~~~---~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~---------------------- 267 (475)
T PRK01297 213 FCDILVATPGRLLDFNQRGEV---HLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPR---------------------- 267 (475)
T ss_pred CCCEEEECHHHHHHHHHcCCc---ccccCceEEechHHHHHhcccHHHHHHHHHhCCC----------------------
Confidence 689999999999998876544 3568999999999999999999999888876531
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
...+|++++|||++..+..+...... .+....+....
T Consensus 268 ---------~~~~q~i~~SAT~~~~~~~~~~~~~~------------------------~~~~v~~~~~~---------- 304 (475)
T PRK01297 268 ---------KEERQTLLFSATFTDDVMNLAKQWTT------------------------DPAIVEIEPEN---------- 304 (475)
T ss_pred ---------CCCceEEEEEeecCHHHHHHHHHhcc------------------------CCEEEEeccCc----------
Confidence 12369999999998766554321110 00000000000
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcE
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 547 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~ 547 (1493)
............+....+...+..++... ..++
T Consensus 305 ----------------------------------------------~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 338 (475)
T PRK01297 305 ----------------------------------------------VASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERV 338 (475)
T ss_pred ----------------------------------------------CCCCcccEEEEEecchhHHHHHHHHHHhcCCCeE
Confidence 00000011111222334555666666544 3689
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||+|++||+||+|.++.+
T Consensus 339 IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~ 418 (475)
T PRK01297 339 MVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDD 418 (475)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
|+||+|||||.|..|.+++|++++|...+..+
T Consensus 419 y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~ 450 (475)
T PRK01297 419 YVHRIGRTGRAGASGVSISFAGEDDAFQLPEI 450 (475)
T ss_pred HHHhhCccCCCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999999999999998876554444
No 60
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.8e-49 Score=484.75 Aligned_cols=360 Identities=27% Similarity=0.466 Sum_probs=299.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..+|+++++++.++++|...||..|+|+|.++|+. +..|+|++++||||||||++|++|+++.+..
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~-i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------------- 92 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKP-ILDGYDTIGQAQSGTGKTATFVIAALQLIDY------------- 92 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHhcC-------------
Confidence 46799999999999999999999999999999995 5578999999999999999999999987621
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...+.++|||+||++||.|+.+.+..++...++.+..++||.....+...+..+
T Consensus 93 --------------------------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 146 (401)
T PTZ00424 93 --------------------------DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAG 146 (401)
T ss_pred --------------------------CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCC
Confidence 123467999999999999999999999888889999999999888888888888
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+||++|.+++..+.. .+.++++||+||||++++++|...+..++..+ +...|++++|||+++.+...
T Consensus 147 ~~Ivv~Tp~~l~~~l~~~~~---~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~ 218 (401)
T PTZ00424 147 VHMVVGTPGRVYDMIDKRHL---RVDDLKLFILDEADEMLSRGFKGQIYDVFKKL-----PPDVQVALFSATMPNEILEL 218 (401)
T ss_pred CCEEEECcHHHHHHHHhCCc---ccccccEEEEecHHHHHhcchHHHHHHHHhhC-----CCCcEEEEEEecCCHHHHHH
Confidence 99999999999999986653 36689999999999999999988888888776 46789999999999765543
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHHh-CCCcEEEEe
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQ-HPGRTLVFC 1084 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~-~~~~~IVF~ 1084 (1493)
..... ..+..+...........+.+.+..+.. ..+...+..++.. ...++||||
T Consensus 219 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~ 274 (401)
T PTZ00424 219 TTKFM------------------------RDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYC 274 (401)
T ss_pred HHHHc------------------------CCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 32111 111111111111122334444444433 2233444444443 356899999
Q ss_pred cchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHH
Q psy16310 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr 1164 (1493)
+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+...|+||
T Consensus 275 ~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr 354 (401)
T PTZ00424 275 NTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHR 354 (401)
T ss_pred cCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1165 ~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
+||+||.|+.|.|++|+++.+...+.++.+.+..
T Consensus 355 ~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~ 388 (401)
T PTZ00424 355 IGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNT 388 (401)
T ss_pred ccccccCCCCceEEEEEcHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999988888777654
No 61
>KOG0327|consensus
Probab=100.00 E-value=1.2e-50 Score=441.36 Aligned_cols=359 Identities=27% Similarity=0.472 Sum_probs=315.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++++|.+.|++.++..||++|+.||+.||+.++ .|.|+++++++|+|||.+|.+++++.+.-
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~-------------- 90 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDM-------------- 90 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCc--------------
Confidence 479999999999999999999999999999998655 77999999999999999999999988732
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH-HhcCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR-ILNKC 926 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~-~l~~~ 926 (1493)
.....+|++++||||||.|+......++...+.++..++||.+...+.. .....
T Consensus 91 -------------------------~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~ 145 (397)
T KOG0327|consen 91 -------------------------SVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDK 145 (397)
T ss_pred -------------------------chHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccC
Confidence 1233469999999999999999999999999999999999988775444 44456
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+|||++.+.+..+.+. ...++++|+||||.|+..||.+++..|+..+ +...|++++|||+|.++...
T Consensus 146 ~hivvGTpgrV~dml~~~~l~---~~~iKmfvlDEaDEmLs~gfkdqI~~if~~l-----p~~vQv~l~SAT~p~~vl~v 217 (397)
T KOG0327|consen 146 PHIVVGTPGRVFDMLNRGSLS---TDGIKMFVLDEADEMLSRGFKDQIYDIFQEL-----PSDVQVVLLSATMPSDVLEV 217 (397)
T ss_pred ceeecCCchhHHHhhcccccc---ccceeEEeecchHhhhccchHHHHHHHHHHc-----CcchhheeecccCcHHHHHH
Confidence 899999999999999877432 4469999999999999999999999999998 47789999999999887665
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecc
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 1086 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s 1086 (1493)
...+ ...|..+.+.........+.+.++......|...|..+.. .-.+.+|||||
T Consensus 218 t~~f------------------------~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~-~~~q~~if~nt 272 (397)
T KOG0327|consen 218 TKKF------------------------MREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR-RVTQAVIFCNT 272 (397)
T ss_pred HHHh------------------------ccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH-hhhcceEEecc
Confidence 4322 2234444444444556777888888877788888888877 66789999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHh
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~G 1166 (1493)
++.+..+...|...+..+..+||+|.+.+|..++..|++|..+|||.|+.++||+|+.++..||||++|...++|+||+|
T Consensus 273 ~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~g 352 (397)
T KOG0327|consen 273 RRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIG 352 (397)
T ss_pred hhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1167 R~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
|+||.|++|.++.+++..+...++++.+.+.-.
T Consensus 353 r~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~ 385 (397)
T KOG0327|consen 353 RAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTP 385 (397)
T ss_pred cccccCCCceeeeeehHhhHHHHHhHHHhcCCc
Confidence 999999999999999999999999998876643
No 62
>KOG0332|consensus
Probab=100.00 E-value=1.9e-50 Score=433.23 Aligned_cols=354 Identities=25% Similarity=0.451 Sum_probs=282.2
Q ss_pred CcccccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcc-CCcEEEEccCCCchhHHHHHHHHHHHHhhccCC
Q psy16310 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221 (1493)
Q Consensus 143 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~ 221 (1493)
...+..+..+|++|+|+|+++++++.++|.+|+.||..++|.+|.. .+|+|.++..|+|||.+|+|.+|.++..
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~----- 156 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP----- 156 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-----
Confidence 4456777889999999999999999999999999999999955543 6899999999999999999999987732
Q ss_pred CCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHH
Q psy16310 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK 301 (1493)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~ 301 (1493)
....|.++.|+|||+||.|+.+++.+++++.++.+....-+.....
T Consensus 157 ----------------------------------~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r 202 (477)
T KOG0332|consen 157 ----------------------------------DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR 202 (477)
T ss_pred ----------------------------------cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc
Confidence 2345679999999999999999999999999888887776542111
Q ss_pred HHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhc-CChhhHHHHHHhhccccCCCccccccccC
Q psy16310 302 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTMIESG 380 (1493)
Q Consensus 302 ~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~-~~~~~l~~il~~l~~~~~~~~~~~~~~~~ 380 (1493)
- ..+ ..+|+|+|||.+.+++.. +....+..+..+|+||||.|++. ||.++-..|+..+
T Consensus 203 G-~~i--~eqIviGTPGtv~Dlm~k--lk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l---------------- 261 (477)
T KOG0332|consen 203 G-NKL--TEQIVIGTPGTVLDLMLK--LKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL---------------- 261 (477)
T ss_pred C-Ccc--hhheeeCCCccHHHHHHH--HHhhChhhceEEEecchhhhhhcccccccchhhhhhc----------------
Confidence 0 001 137999999999999874 23334668999999999999976 6888877777655
Q ss_pred CcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcc
Q psy16310 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460 (1493)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1493)
++..|+++||||....+..++...... +....+
T Consensus 262 -----------------P~~~QllLFSATf~e~V~~Fa~kivpn------------------------~n~i~L------ 294 (477)
T KOG0332|consen 262 -----------------PRNQQLLLFSATFVEKVAAFALKIVPN------------------------ANVIIL------ 294 (477)
T ss_pred -----------------CCcceEEeeechhHHHHHHHHHHhcCC------------------------Cceeee------
Confidence 456799999999988877665322111 111100
Q ss_pred ccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccccc-CchhhHHHHH
Q psy16310 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYF 539 (1493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~ 539 (1493)
.+..-....+.+.++.|.. +.|...|.++
T Consensus 295 --------------------------------------------------k~eel~L~~IkQlyv~C~~~~~K~~~l~~l 324 (477)
T KOG0332|consen 295 --------------------------------------------------KREELALDNIKQLYVLCACRDDKYQALVNL 324 (477)
T ss_pred --------------------------------------------------ehhhccccchhhheeeccchhhHHHHHHHH
Confidence 0000111223344445543 4566666664
Q ss_pred HhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 540 ILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 540 l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
.... -++.||||.|+.+|.+|+..|...|..+..+||+|+..+|..++++||.|..+|||+|+|++||||++.|++|||
T Consensus 325 yg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN 404 (477)
T KOG0332|consen 325 YGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN 404 (477)
T ss_pred HhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe
Confidence 3322 378999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC------CChHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 619 YHVP------RTSEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 619 yd~P------~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
||+| .+.+.|+||+|||||.|+.|.++.|+..++-
T Consensus 405 ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 405 YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDS 445 (477)
T ss_pred cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCc
Confidence 9999 5689999999999999999999999987653
No 63
>KOG0334|consensus
Probab=100.00 E-value=1e-50 Score=492.98 Aligned_cols=366 Identities=31% Similarity=0.526 Sum_probs=315.5
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 147 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
+.++.+|.+.|++..++..++++||.+|+|||.+||| ++..|+|||++|.||||||++|+||++.|+.-.+..
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP-~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~------ 433 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIP-AIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL------ 433 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcc-hhccCcceEEeeccCCccchhhhcchhhhhhcCCCh------
Confidence 5667899999999999999999999999999999999 777999999999999999999999999887542211
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
....||.+|||+|||+||.||++.+..+...+++.+.+++|++....+...+
T Consensus 434 ----------------------------~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiael 485 (997)
T KOG0334|consen 434 ----------------------------EEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAEL 485 (997)
T ss_pred ----------------------------hhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHH
Confidence 1234899999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
..++.|+|||||+.++++..++.....|.++.+||+||||+|++++|.+++..|++++
T Consensus 486 kRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nl---------------------- 543 (997)
T KOG0334|consen 486 KRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNL---------------------- 543 (997)
T ss_pred hcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhc----------------------
Confidence 9999999999999999998888888888888899999999999999999999999887
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
.+.+|+++||||+|..+..+.+-... .|..+.
T Consensus 544 -----------rpdrQtvlfSatfpr~m~~la~~vl~------------------------~Pveii------------- 575 (997)
T KOG0334|consen 544 -----------RPDRQTVLFSATFPRSMEALARKVLK------------------------KPVEII------------- 575 (997)
T ss_pred -----------chhhhhhhhhhhhhHHHHHHHHHhhc------------------------CCeeEE-------------
Confidence 45589999999999887665432111 000000
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccc-cCchhhHHHHHHhhC--
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFILQH-- 543 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~-- 543 (1493)
..........+.....+|. .+.|+..|..+|...
T Consensus 576 -------------------------------------------v~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e 612 (997)
T KOG0334|consen 576 -------------------------------------------VGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE 612 (997)
T ss_pred -------------------------------------------EccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh
Confidence 0001111223334445555 677888888887654
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCC
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~ 623 (1493)
.+++||||.....|..+.+-|...|+.+..+||+.++.+|..+++.|++|.+++||||++++||+|++++.+|||||+|.
T Consensus 613 ~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pn 692 (997)
T KOG0334|consen 613 DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPN 692 (997)
T ss_pred cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 624 s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
...+|+||+|||||+|+.|.|++|+++.+......|.
T Consensus 693 h~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~ 729 (997)
T KOG0334|consen 693 HYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLC 729 (997)
T ss_pred hHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHH
Confidence 9999999999999999999999999997776655553
No 64
>KOG0337|consensus
Probab=100.00 E-value=7.4e-50 Score=435.03 Aligned_cols=356 Identities=37% Similarity=0.556 Sum_probs=305.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
..|..+||+..+.+++.+.||..|||+|+.+|| .+++++|++..|.||||||.+|++|+++++...
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTip-liLe~~dvv~martgsgktaaf~ipm~e~Lk~~------------- 86 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIP-LILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH------------- 86 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhccccc-ceeeccccceeeecCCcchhhHHHHHHHHHhhc-------------
Confidence 468889999999999999999999999999999 666899999999999999999999999988542
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
...+.++++++|||+||.|..++.+.++++++++..+++||....+++..+..++
T Consensus 87 -------------------------s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~np 141 (529)
T KOG0337|consen 87 -------------------------SQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENP 141 (529)
T ss_pred -------------------------cccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCC
Confidence 1356789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
|||++|||++..+.-.-. + .|+.+.+|||||||+++++||.+++..++.+++
T Consensus 142 Dii~ATpgr~~h~~vem~--l-~l~sveyVVfdEadrlfemgfqeql~e~l~rl~------------------------- 193 (529)
T KOG0337|consen 142 DIIIATPGRLLHLGVEMT--L-TLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP------------------------- 193 (529)
T ss_pred CEEEecCceeeeeehhee--c-cccceeeeeehhhhHHHhhhhHHHHHHHHHhCC-------------------------
Confidence 999999999976544222 2 377899999999999999999999999999883
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
..+|+++||||+|..+..+.+... ..|..+
T Consensus 194 --------~~~QTllfSatlp~~lv~fakaGl------------------------~~p~lV------------------ 223 (529)
T KOG0337|consen 194 --------ESRQTLLFSATLPRDLVDFAKAGL------------------------VPPVLV------------------ 223 (529)
T ss_pred --------CcceEEEEeccCchhhHHHHHccC------------------------CCCceE------------------
Confidence 446999999999987766543111 001000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCC--cEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG--RTL 548 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~I 548 (1493)
.+--...+...+......+....|..+|+.++....+ +++
T Consensus 224 --------------------------------------Rldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~ 265 (529)
T KOG0337|consen 224 --------------------------------------RLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTI 265 (529)
T ss_pred --------------------------------------EeehhhhcchhhhhheeeeccHHHHHHHHHHHhcccccccee
Confidence 0000111112223334456677888888888887754 899
Q ss_pred EEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHH
Q psy16310 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628 (1493)
Q Consensus 549 IF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~y 628 (1493)
|||.|...++.+...|...|+.+..++|.|.+..|...+..|+.++..+||.||+++||+|||..+.|||||+|.+..-|
T Consensus 266 vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klF 345 (529)
T KOG0337|consen 266 VFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLF 345 (529)
T ss_pred EEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 629 IHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 629 iQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
+||+||++|+|+.|.+|.|+.+.|.++...+..
T Consensus 346 vhRVgr~aragrtg~aYs~V~~~~~~yl~DL~l 378 (529)
T KOG0337|consen 346 VHRVGRVARAGRTGRAYSLVASTDDPYLLDLQL 378 (529)
T ss_pred EEEecchhhccccceEEEEEecccchhhhhhhh
Confidence 999999999999999999999999988776643
No 65
>KOG4284|consensus
Probab=100.00 E-value=3.1e-49 Score=447.87 Aligned_cols=359 Identities=25% Similarity=0.439 Sum_probs=302.8
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
.....|+++.|...++..|+..||..||+||..|||. ...+.|+|++|..|+|||++|.+.+++.+..
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~-~~~kmDliVQaKSGTGKTlVfsv~av~sl~~----------- 89 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPA-IFSKMDLIVQAKSGTGKTLVFSVLAVESLDS----------- 89 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhh-hhcccceEEEecCCCCceEEEEeeeehhcCc-----------
Confidence 3446789999999999999999999999999999994 5577899999999999999999998876632
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC-CCcEEEEEEcCCCHHHHHHHh
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY-TPVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~-~~~~v~~~~gg~~~~~~~~~l 923 (1493)
....++++||+||||+|.||..++..++.. .++++.+++||+........+
T Consensus 90 ----------------------------~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl 141 (980)
T KOG4284|consen 90 ----------------------------RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL 141 (980)
T ss_pred ----------------------------ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh
Confidence 244568999999999999999999999865 589999999999888777666
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
+. ++|+||||||+..++..+.++ ..+++++||||||.|++ ..|..++..|+..| |..+|++.||||.|..
T Consensus 142 k~-~rIvIGtPGRi~qL~el~~~n---~s~vrlfVLDEADkL~~t~sfq~~In~ii~sl-----P~~rQv~a~SATYp~n 212 (980)
T KOG4284|consen 142 KQ-TRIVIGTPGRIAQLVELGAMN---MSHVRLFVLDEADKLMDTESFQDDINIIINSL-----PQIRQVAAFSATYPRN 212 (980)
T ss_pred hh-ceEEecCchHHHHHHHhcCCC---ccceeEEEeccHHhhhchhhHHHHHHHHHHhc-----chhheeeEEeccCchh
Confidence 54 589999999999999887754 55899999999999998 67889999999988 5789999999999988
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEeccc--------chhhHHHHHHH
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD--------EKDSYLYYFIL 1074 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~k~~~l~~~l~ 1074 (1493)
+.+.+... +.+|.++.+.......-.+.++++..... .|...|-.+..
T Consensus 213 Ldn~Lsk~------------------------mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~ 268 (980)
T KOG4284|consen 213 LDNLLSKF------------------------MRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFK 268 (980)
T ss_pred HHHHHHHH------------------------hcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHh
Confidence 88776432 34566666665555555666665544332 23334444444
Q ss_pred hCC-CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec
Q psy16310 1075 QHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153 (1493)
Q Consensus 1075 ~~~-~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d 1153 (1493)
.-+ .+.||||+....|+.++..|...|+.|.++.|.|+|.+|..+++.++.-.++|||+||..+||||-|+|++|||.|
T Consensus 269 ~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD 348 (980)
T KOG4284|consen 269 SIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNID 348 (980)
T ss_pred hCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecC
Confidence 333 4799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHhccCCCCCCCeEEEEecCCCH-HHHHHHHHhc
Q psy16310 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEI-PLYIKMFNSL 1196 (1493)
Q Consensus 1154 ~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~-~~~~~~~~~~ 1196 (1493)
+|.+.++|+||||||||.|..|.+++|+...+. ..|..+...+
T Consensus 349 ~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~~ri 392 (980)
T KOG4284|consen 349 APADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMAYRI 392 (980)
T ss_pred CCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHHHHHH
Confidence 999999999999999999999999999977643 5555553333
No 66
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.3e-48 Score=470.68 Aligned_cols=355 Identities=28% Similarity=0.484 Sum_probs=284.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
..+|+++++++.+.+++.+.||..|+|+|.++|+ .+..++|++++||||||||++|++|+++++..
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~-~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------------- 92 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIK-PILDGYDTIGQAQSGTGKTATFVIAALQLIDY------------- 92 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-------------
Confidence 4679999999999999999999999999999998 56688999999999999999999999987631
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
...+.++|||+||++||.|+.+.+..++...++.+..++|+.....++..+..+
T Consensus 93 --------------------------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 146 (401)
T PTZ00424 93 --------------------------DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAG 146 (401)
T ss_pred --------------------------CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCC
Confidence 123467999999999999999999999888888888999999888888888888
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|.+++...... +.++++|||||||++++.++...+..++..+
T Consensus 147 ~~Ivv~Tp~~l~~~l~~~~~~---l~~i~lvViDEah~~~~~~~~~~~~~i~~~~------------------------- 198 (401)
T PTZ00424 147 VHMVVGTPGRVYDMIDKRHLR---VDDLKLFILDEADEMLSRGFKGQIYDVFKKL------------------------- 198 (401)
T ss_pred CCEEEECcHHHHHHHHhCCcc---cccccEEEEecHHHHHhcchHHHHHHHHhhC-------------------------
Confidence 999999999999999866543 5589999999999999999888887777654
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+...|++++|||+++.+.......... +.......
T Consensus 199 --------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~~------------- 233 (401)
T PTZ00424 199 --------PPDVQVALFSATMPNEILELTTKFMRD------------------------PKRILVKK------------- 233 (401)
T ss_pred --------CCCcEEEEEEecCCHHHHHHHHHHcCC------------------------CEEEEeCC-------------
Confidence 345799999999987654432211000 00000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccc-cCchhhHHHHHHhh-CCCcE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFILQ-HPGRT 547 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~-~~~~~ 547 (1493)
... ...........+. ...+...+...+.. ...++
T Consensus 234 ----~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (401)
T PTZ00424 234 ----DEL---------------------------------------TLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQA 270 (401)
T ss_pred ----CCc---------------------------------------ccCCceEEEEecChHHHHHHHHHHHHHhcCCCeE
Confidence 000 0000000000000 01122233333332 24689
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.+...
T Consensus 271 ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~ 350 (401)
T PTZ00424 271 IIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPEN 350 (401)
T ss_pred EEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|+||+|||||.|+.|.|++|+++++...+..++
T Consensus 351 y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e 383 (401)
T PTZ00424 351 YIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIE 383 (401)
T ss_pred EeecccccccCCCCceEEEEEcHHHHHHHHHHH
Confidence 999999999999999999999998888776663
No 67
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.1e-47 Score=485.43 Aligned_cols=372 Identities=21% Similarity=0.232 Sum_probs=268.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHH
Q psy16310 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 853 (1493)
Q Consensus 774 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 853 (1493)
.+++.+.++|.+.||+.|||+|.++|| .+..|+|+++++|||||||+||++|+++.+..
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~-~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------------------- 78 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAE-LAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------------------- 78 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHH-HHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------------------
Confidence 388999999999999999999999999 45688999999999999999999999998743
Q ss_pred HHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEEC
Q psy16310 854 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933 (1493)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~T 933 (1493)
.++.++|||+||||||.|+.+.++.++ ..++++..+.|+.+.. +...+..+++|+|+|
T Consensus 79 --------------------~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtT 136 (742)
T TIGR03817 79 --------------------DPRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTN 136 (742)
T ss_pred --------------------CCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEC
Confidence 134589999999999999999999987 4578888888887754 445566678999999
Q ss_pred cHHHHHHHHhCcC-ccccccceeEEEecccchhccCCChhHHHHHHHHhccc--CCCCCceEEEEecccccchHhHHhhh
Q psy16310 934 PGRLWEFIQLGHF-HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT--ETSQPRQTFVFSATLTHSLKNSLNLK 1010 (1493)
Q Consensus 934 P~rl~~~l~~~~~-~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~--~~~~~~q~ll~SATl~~~~~~~~~~~ 1010 (1493)
|++|...+..... ....+.++++|||||||.|.+ .|...+..++.++... ..+..+|+++||||+++.... +...
T Consensus 137 Pd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~-~~~l 214 (742)
T TIGR03817 137 PDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAA-ASRL 214 (742)
T ss_pred hHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHH-HHHH
Confidence 9998754322111 112367899999999999876 4777777777766431 123568999999999976542 2211
Q ss_pred ccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhH
Q psy16310 1011 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 1090 (1493)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~ 1090 (1493)
.+... ..+ ..+........ ..+..+........ .... ........+...+..++ ....++||||+|++.|
T Consensus 215 ~g~~~-~~i-~~~~~~~~~~~-~~~~~p~~~~~~~~----~~~~--~r~~~~~~~~~~l~~l~-~~~~~~IVF~~sr~~a 284 (742)
T TIGR03817 215 IGAPV-VAV-TEDGSPRGART-VALWEPPLTELTGE----NGAP--VRRSASAEAADLLADLV-AEGARTLTFVRSRRGA 284 (742)
T ss_pred cCCCe-EEE-CCCCCCcCceE-EEEecCCccccccc----cccc--cccchHHHHHHHHHHHH-HCCCCEEEEcCCHHHH
Confidence 11110 000 00000000000 00000000000000 0000 00000112233333333 3568999999999999
Q ss_pred HHHHHHHHhc--------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHH
Q psy16310 1091 KRLTQLLTML--------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162 (1493)
Q Consensus 1091 ~~l~~~L~~~--------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yi 1162 (1493)
+.++..|... +..+..|||+|++.+|..++++|++|++++|||||++++|||||++++||||++|.+..+|+
T Consensus 285 e~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~ 364 (742)
T TIGR03817 285 ELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLW 364 (742)
T ss_pred HHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHH
Confidence 9999988764 56788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEecC--CCHHHHHHHHHhccccC
Q psy16310 1163 HRSGRTARANNEGLTLVLIES--DEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1163 qr~GR~gR~g~~G~~i~l~~~--~e~~~~~~~~~~~~~~~ 1200 (1493)
||+|||||+|+.|.+++++.. .|...+......++..+
T Consensus 365 qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~ 404 (742)
T TIGR03817 365 QQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPV 404 (742)
T ss_pred HhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCC
Confidence 999999999999999999874 45555555555555543
No 68
>KOG0344|consensus
Probab=100.00 E-value=7.9e-48 Score=440.30 Aligned_cols=361 Identities=29% Similarity=0.451 Sum_probs=285.2
Q ss_pred ccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHH
Q psy16310 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234 (1493)
Q Consensus 155 ~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 234 (1493)
++..++.++..+...+|..|+|+|.+++| .+..++|+++|||||||||++|++|++++|.....
T Consensus 140 ~~~~~~~ll~nl~~~~F~~Pt~iq~~aip-vfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~--------------- 203 (593)
T KOG0344|consen 140 DYSMNKRLLENLQELGFDEPTPIQKQAIP-VFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ--------------- 203 (593)
T ss_pred hhhhcHHHHHhHhhCCCCCCCcccchhhh-hhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc---------------
Confidence 47889999999999999999999999999 56688999999999999999999999999865321
Q ss_pred HHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhc--CCCCeEEEEEEcCCCHHHHHH-HhcCCCC
Q psy16310 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG--KYTPVKVACVVGGMSTEKQLR-ILNKCPH 311 (1493)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~--~~~~i~v~~~~G~~~~~~~~~-~l~~~~~ 311 (1493)
.+...+.+++|+.|||+||.|+++.+.++. ..++++++.+........... .....++
T Consensus 204 -------------------~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~d 264 (593)
T KOG0344|consen 204 -------------------EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYD 264 (593)
T ss_pred -------------------ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHH
Confidence 123567899999999999999999999998 666677766665533222211 2223468
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhc-CChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~-~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
|+|+||-++..++..+....+ ++.+.++|+||||.+++. .|..++..|+..+.
T Consensus 265 ili~TP~ri~~~~~~~~~~id-l~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~------------------------- 318 (593)
T KOG0344|consen 265 ILISTPMRIVGLLGLGKLNID-LSKVEWLVVDEADLLFEPEFFVEQLADIYSACQ------------------------- 318 (593)
T ss_pred HHhcCHHHHHHHhcCCCccch-hheeeeEeechHHhhhChhhHHHHHHHHHHHhc-------------------------
Confidence 999999999999987764443 779999999999999998 89999999988763
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
.+...+-+||||++..+.+++...........+...... .
T Consensus 319 -------s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa------------------------~--------- 358 (593)
T KOG0344|consen 319 -------SPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA------------------------N--------- 358 (593)
T ss_pred -------CcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH------------------------h---------
Confidence 344567799999999988877543311111111000000 0
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHhhC-CCcEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQH-PGRTL 548 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~-~~~~I 548 (1493)
..+.+...+| ....|...+.+++... +.++|
T Consensus 359 -----------------------------------------------~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~l 391 (593)
T KOG0344|consen 359 -----------------------------------------------ETVDQELVFCGSEKGKLLALRQLVASGFKPPVL 391 (593)
T ss_pred -----------------------------------------------hhhhhhheeeecchhHHHHHHHHHhccCCCCeE
Confidence 0011111112 1223444444444433 57999
Q ss_pred EEecchhhHHHHHHHH-HhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 549 VFCNSISSVKRLTQLL-TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 549 IF~~s~~~a~~L~~~L-~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||+.+.+.|..|...| ...++.+.++||..++.+|..++++||.|+++|||||++++||+|+.+|++|||||+|.+..+
T Consensus 392 IfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~s 471 (593)
T KOG0344|consen 392 IFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLS 471 (593)
T ss_pred EEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHH
Confidence 9999999999999999 677999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQE 663 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~~ 663 (1493)
|+||+||+||+|++|+||+||++.|++....+.+..
T Consensus 472 yihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 472 YIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred HHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 999999999999999999999999999887775443
No 69
>KOG0344|consensus
Probab=100.00 E-value=1.2e-47 Score=438.74 Aligned_cols=368 Identities=29% Similarity=0.453 Sum_probs=298.5
Q ss_pred hcccccc----CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 766 QMAEWVK----FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 766 ~~~~f~~----l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
++.+|.+ +..++.+++.+...||..|||+|.+||| .+..++|+++|||||||||++|.+|++.++.....
T Consensus 130 ~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aip-vfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~----- 203 (593)
T KOG0344|consen 130 PLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIP-VFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ----- 203 (593)
T ss_pred ccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhh-hhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-----
Confidence 3445554 6789999999999999999999999999 55578999999999999999999999998854321
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhh--CCCCcEEEEEEcCCCH-HH
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG--KYTPVKVACVVGGMST-EK 918 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~--~~~~~~v~~~~gg~~~-~~ 918 (1493)
.+...+.+++|+.|||+||.|++..+..+. ...++++..+...... ..
T Consensus 204 -----------------------------~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk 254 (593)
T KOG0344|consen 204 -----------------------------EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQK 254 (593)
T ss_pred -----------------------------ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhc
Confidence 134567899999999999999999999998 6666666655543222 22
Q ss_pred HHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEec
Q psy16310 919 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSA 997 (1493)
Q Consensus 919 ~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~SA 997 (1493)
........++|+|+||-++..++..+.... .+..+.++|+||||++++. .|..++..|+..+. .+...+-+|||
T Consensus 255 ~a~~~~~k~dili~TP~ri~~~~~~~~~~i-dl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~----s~~i~~a~FSa 329 (593)
T KOG0344|consen 255 PAFLSDEKYDILISTPMRIVGLLGLGKLNI-DLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQ----SPDIRVALFSA 329 (593)
T ss_pred cchhHHHHHHHHhcCHHHHHHHhcCCCccc-hhheeeeEeechHHhhhChhhHHHHHHHHHHHhc----Ccchhhhhhhc
Confidence 222233456999999999999998765433 4788999999999999998 88899999998875 36678889999
Q ss_pred ccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEeccc-chhhHHHHHHHhC
Q psy16310 998 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQH 1076 (1493)
Q Consensus 998 Tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~ 1076 (1493)
|++..+++++..... ....+.+.........+.+..+.|... .|...+..++...
T Consensus 330 t~~~~VEE~~~~i~~------------------------~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g 385 (593)
T KOG0344|consen 330 TISVYVEEWAELIKS------------------------DLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASG 385 (593)
T ss_pred cccHHHHHHHHHhhc------------------------cceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhcc
Confidence 999999888754322 222233333333344555555555543 4555555555443
Q ss_pred -CCcEEEEecchhhHHHHHHHH-HhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecC
Q psy16310 1077 -PGRTLVFCNSISSVKRLTQLL-TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154 (1493)
Q Consensus 1077 -~~~~IVF~~s~~~~~~l~~~L-~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~ 1154 (1493)
..+++||+.+.+.|..|+..| .--++.+.++||..++.+|..++++|+.|+++|||||++++||+|+.+|+.|||||+
T Consensus 386 ~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 386 FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDF 465 (593)
T ss_pred CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCC
Confidence 678999999999999999999 566899999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcc
Q psy16310 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197 (1493)
Q Consensus 1155 p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~ 1197 (1493)
|.+..+|+||+||+||+|+.|.||+|++..+...++.+..-+.
T Consensus 466 p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 466 PQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred CchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 9999999999999999999999999999999998888776654
No 70
>KOG0951|consensus
Probab=100.00 E-value=6.7e-45 Score=439.22 Aligned_cols=388 Identities=20% Similarity=0.231 Sum_probs=274.7
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHH
Q psy16310 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 235 (1493)
Q Consensus 156 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 235 (1493)
..+|.+-..++ .|+..+.++|..+.+.++....|+++|||||+|||.++++-+|+.+-.+....
T Consensus 294 selP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~d-------------- 357 (1674)
T KOG0951|consen 294 SELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRED-------------- 357 (1674)
T ss_pred cCCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccc--------------
Confidence 34666666665 46677999999999999988899999999999999999999999886543211
Q ss_pred HHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEe
Q psy16310 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 315 (1493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~ 315 (1493)
....-...++++++|+++||+.+...|.+....+|++|...+|+.....+.. .+.+|+||
T Consensus 358 -----------------gs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~ 417 (1674)
T KOG0951|consen 358 -----------------GSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVT 417 (1674)
T ss_pred -----------------cceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEe
Confidence 1112234689999999999999999999988999999999999976544322 34589999
Q ss_pred CcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhcccc
Q psy16310 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395 (1493)
Q Consensus 316 TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1493)
||+. +|.+.+...+....+-++++|+||.| |+...+++.++.|..+..... .
T Consensus 418 TPEK-~DiITRk~gdraY~qlvrLlIIDEIH-LLhDdRGpvLESIVaRt~r~s--------------------------e 469 (1674)
T KOG0951|consen 418 TPEK-WDIITRKSGDRAYEQLVRLLIIDEIH-LLHDDRGPVLESIVARTFRRS--------------------------E 469 (1674)
T ss_pred ccch-hhhhhcccCchhHHHHHHHHhhhhhh-hcccccchHHHHHHHHHHHHh--------------------------h
Confidence 9999 57777665555445558999999999 556789999999987765331 1
Q ss_pred CCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCC
Q psy16310 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 475 (1493)
Q Consensus 396 ~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1493)
.....++.+++|||+|+... +..++....+.+......++ +..+.+.++-.....
T Consensus 470 s~~e~~RlVGLSATLPNy~D------------------------V~~Fl~v~~~glf~fd~syR-pvPL~qq~Igi~ek~ 524 (1674)
T KOG0951|consen 470 STEEGSRLVGLSATLPNYED------------------------VASFLRVDPEGLFYFDSSYR-PVPLKQQYIGITEKK 524 (1674)
T ss_pred hcccCceeeeecccCCchhh------------------------hHHHhccCcccccccCcccC-cCCccceEeccccCC
Confidence 22456789999999997431 11122211111111111111 111111111110000
Q ss_pred cchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC--CCcEEEEecc
Q psy16310 476 KDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PGRTLVFCNS 553 (1493)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~IIF~~s 553 (1493)
.... ...-....++-+.++ .+++||||++
T Consensus 525 ~~~~-------------------------------------------------~qamNe~~yeKVm~~agk~qVLVFVHs 555 (1674)
T KOG0951|consen 525 PLKR-------------------------------------------------FQAMNEACYEKVLEHAGKNQVLVFVHS 555 (1674)
T ss_pred chHH-------------------------------------------------HHHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 0000 000001112222222 4699999999
Q ss_pred hhhHHHHHHHHHh-------------------------------------cCCCccccccCCCHHHHHHHHHHHhcCCCe
Q psy16310 554 ISSVKRLTQLLTM-------------------------------------LKCSPLPLHASMNQRQRLKNLDRFRDQNNS 596 (1493)
Q Consensus 554 ~~~a~~L~~~L~~-------------------------------------~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~ 596 (1493)
|+++...++.++. +..+++.||+||+..+|..+.+.|++|.++
T Consensus 556 RkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iq 635 (1674)
T KOG0951|consen 556 RKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQ 635 (1674)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCcee
Confidence 9998887777631 246788999999999999999999999999
Q ss_pred EEEEechhhccCCCCCCcEEE----EecC------CCChHHHHHHHhccccCCC--CCeEEEEecCCcchhhhhhhhhhc
Q psy16310 597 ILLATDVAARGLDIPGIEHVI----HYHV------PRTSEIYIHRSGRTARANN--EGLTVVLIESDEIPLKTKFNLQEE 664 (1493)
Q Consensus 597 VLVaTdv~~rGlDip~v~~VI----~yd~------P~s~~~yiQR~GRagR~g~--~G~~i~l~~~~e~~~~~~l~~~~~ 664 (1493)
|||+|..+++|+++|+-+++| -||+ +.++.+.+||.|||||.+. .|..+++...++..++..+.++.-
T Consensus 636 vlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qL 715 (1674)
T KOG0951|consen 636 VLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQL 715 (1674)
T ss_pred EEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcC
Confidence 999999999999999988888 3765 4679999999999999665 488899988899999888888777
Q ss_pred cchHHHHHHHhhhcccc
Q psy16310 665 ENNEEEERAEADKEKTE 681 (1493)
Q Consensus 665 ~~~e~~e~~~~~~~~~e 681 (1493)
+.++..-....+..+.+
T Consensus 716 piesq~~~rl~d~lnae 732 (1674)
T KOG0951|consen 716 PIESQFVSRLADCLNAE 732 (1674)
T ss_pred CChHHHHHHhhhhhhhh
Confidence 77666655554444433
No 71
>KOG0327|consensus
Probab=100.00 E-value=4.6e-47 Score=413.48 Aligned_cols=353 Identities=28% Similarity=0.475 Sum_probs=291.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|++++|++.|++.++..||++|+.||+.||++. ..|.|+++++++|+|||.+|++++++++.-.
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~-i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~------------- 91 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPC-IKGHDVIAQAQSGTGKTAAFLISILQQIDMS------------- 91 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhcccccc-ccCCceeEeeeccccchhhhHHHHHhhcCcc-------------
Confidence 47999999999999999999999999999999855 4789999999999999999999999887321
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh-cCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL-NKC 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l-~~~ 309 (1493)
.....|++++|||+||.|+..+...++...++++..+.||.....+...+ ...
T Consensus 92 --------------------------~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~ 145 (397)
T KOG0327|consen 92 --------------------------VKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDK 145 (397)
T ss_pred --------------------------hHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccC
Confidence 12235999999999999999999999999999999999998877554444 456
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+|||++.+++..+.+.. ..+.++|+||||.|+..+|.+++..|++.+
T Consensus 146 ~hivvGTpgrV~dml~~~~l~~---~~iKmfvlDEaDEmLs~gfkdqI~~if~~l------------------------- 197 (397)
T KOG0327|consen 146 PHIVVGTPGRVFDMLNRGSLST---DGIKMFVLDEADEMLSRGFKDQIYDIFQEL------------------------- 197 (397)
T ss_pred ceeecCCchhHHHhhccccccc---cceeEEeecchHhhhccchHHHHHHHHHHc-------------------------
Confidence 8999999999999998764433 368999999999999999999999999988
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+...|++++|||+|.++.....-....+....+.+..
T Consensus 198 --------p~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~----------------------------------- 234 (397)
T KOG0327|consen 198 --------PSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE----------------------------------- 234 (397)
T ss_pred --------CcchhheeecccCcHHHHHHHHHhccCceEEEecchh-----------------------------------
Confidence 4457999999999988765432111111100000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 549 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~II 549 (1493)
.......+.+.......|...|+.+.. .-.+.+|
T Consensus 235 ---------------------------------------------ltl~gikq~~i~v~k~~k~~~l~dl~~-~~~q~~i 268 (397)
T KOG0327|consen 235 ---------------------------------------------LTLEGIKQFYINVEKEEKLDTLCDLYR-RVTQAVI 268 (397)
T ss_pred ---------------------------------------------hhhhheeeeeeeccccccccHHHHHHH-hhhcceE
Confidence 000111122222223336666666666 5578999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHH
Q psy16310 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yi 629 (1493)
|||++..+..+...|...+..+..+||+|.+.+|..++..|+.|..+|||.|++++||+|+..|.+|||||+|.+...|+
T Consensus 269 f~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yi 348 (397)
T KOG0327|consen 269 FCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYI 348 (397)
T ss_pred EecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 630 QR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
||+||+||.|++|.++.+++..+...++.++
T Consensus 349 hR~gr~gr~grkg~~in~v~~~d~~~lk~ie 379 (397)
T KOG0327|consen 349 HRIGRAGRFGRKGVAINFVTEEDVRDLKDIE 379 (397)
T ss_pred hhcccccccCCCceeeeeehHhhHHHHHhHH
Confidence 9999999999999999999999888777765
No 72
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.9e-46 Score=473.10 Aligned_cols=361 Identities=22% Similarity=0.265 Sum_probs=262.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
.+++.+.++|.++||++||++|.++|| ++..|+|+++++|||||||++|++|+++.+..
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~-~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------------------- 78 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAE-LAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------------------- 78 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHH-HHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------------------
Confidence 488999999999999999999999998 56689999999999999999999999988853
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeC
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~T 316 (1493)
.++.++|||+|||+||.|+.+.+..++ ..++++..+.|+++.. +...+..+++|||+|
T Consensus 79 --------------------~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtT 136 (742)
T TIGR03817 79 --------------------DPRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTN 136 (742)
T ss_pred --------------------CCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEC
Confidence 124679999999999999999999987 4578998888888754 445566778999999
Q ss_pred cHHHHHHHHcCCcc-ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhcccc
Q psy16310 317 PGRLWEFIQLGHFH-LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395 (1493)
Q Consensus 317 P~~L~~~l~~~~~~-~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1493)
|++|...+...+.. ...|+++++|||||||.|.+ .|..++..++.++.... .
T Consensus 137 Pd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~--------------------------~ 189 (742)
T TIGR03817 137 PDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLC--------------------------A 189 (742)
T ss_pred hHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHH--------------------------H
Confidence 99997543322111 12367899999999999976 58888888887764221 0
Q ss_pred CCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCC
Q psy16310 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 475 (1493)
Q Consensus 396 ~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1493)
..+..+|+++||||+++.....-.+ .+.+. ..+. .. ...........+
T Consensus 190 ~~g~~~q~i~~SATi~n~~~~~~~l-~g~~~-----------------------~~i~--~~-~~~~~~~~~~~~----- 237 (742)
T TIGR03817 190 RYGASPVFVLASATTADPAAAASRL-IGAPV-----------------------VAVT--ED-GSPRGARTVALW----- 237 (742)
T ss_pred hcCCCCEEEEEecCCCCHHHHHHHH-cCCCe-----------------------EEEC--CC-CCCcCceEEEEe-----
Confidence 1134579999999998764321111 10000 0000 00 000000000000
Q ss_pred cchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchh
Q psy16310 476 KDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555 (1493)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~ 555 (1493)
.+........... .. .......+...+..++. ...++||||+|+.
T Consensus 238 ----------------------------~p~~~~~~~~~~~--~~----r~~~~~~~~~~l~~l~~-~~~~~IVF~~sr~ 282 (742)
T TIGR03817 238 ----------------------------EPPLTELTGENGA--PV----RRSASAEAADLLADLVA-EGARTLTFVRSRR 282 (742)
T ss_pred ----------------------------cCCcccccccccc--cc----ccchHHHHHHHHHHHHH-CCCCEEEEcCCHH
Confidence 0000000000000 00 00001123344444444 4679999999999
Q ss_pred hHHHHHHHHHhc--------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 556 SVKRLTQLLTML--------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 556 ~a~~L~~~L~~~--------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
.|+.++..|... +..+..+||++++.+|..+++.|++|++++||||+++++|||||++++||+||+|.++.+
T Consensus 283 ~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~ 362 (742)
T TIGR03817 283 GAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRAS 362 (742)
T ss_pred HHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHH
Confidence 999999988753 567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcch
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
|+||+|||||+|+.|.++++++.+..+
T Consensus 363 y~qRiGRaGR~G~~g~ai~v~~~~~~d 389 (742)
T TIGR03817 363 LWQQAGRAGRRGQGALVVLVARDDPLD 389 (742)
T ss_pred HHHhccccCCCCCCcEEEEEeCCChHH
Confidence 999999999999999999998754433
No 73
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.3e-45 Score=460.66 Aligned_cols=343 Identities=19% Similarity=0.233 Sum_probs=259.1
Q ss_pred cCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhH
Q psy16310 772 KFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 850 (1493)
Q Consensus 772 ~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~ 850 (1493)
.|+....+...++. +||..|+|+|.++|+. +..|+|+++++|||+|||+||++|++..
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~a-iL~GrDVLVimPTGSGKSLcYQLPAL~~-------------------- 499 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINA-TMSGYDVFVLMPTGGGKSLTYQLPALIC-------------------- 499 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCccHHHHHHHHHHHc--------------------
Confidence 35555666666554 7999999999999995 5588999999999999999999999842
Q ss_pred HHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc------
Q psy16310 851 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN------ 924 (1493)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~------ 924 (1493)
+..+|||+|+++|+.++...+... ++.+..+.|+.....+...+.
T Consensus 500 -------------------------~GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~ 550 (1195)
T PLN03137 500 -------------------------PGITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEY 550 (1195)
T ss_pred -------------------------CCcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcC
Confidence 135999999999998766666553 589999999998777655443
Q ss_pred CCCcEEEECcHHHHH--HHHhCcCccccccceeEEEecccchhccCC--ChhHHHHHHHHhcccCCCCCceEEEEecccc
Q psy16310 925 KCPHILVATPGRLWE--FIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~--~l~~~~~~~~~l~~l~~lVlDEah~ll~~~--~~~~l~~il~~l~~~~~~~~~q~ll~SATl~ 1000 (1493)
..++|||+||++|.. .+.+....+.....+.+|||||||++++|| |.+.+..+-. +.. ..+..++++||||++
T Consensus 551 g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~-Lr~--~fp~vPilALTATAT 627 (1195)
T PLN03137 551 SKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGI-LKQ--KFPNIPVLALTATAT 627 (1195)
T ss_pred CCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHH-HHH--hCCCCCeEEEEecCC
Confidence 467999999999852 222111111223358899999999999998 5566654311 111 124678999999999
Q ss_pred cchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc-hhhHHHHHHHhC--C
Q psy16310 1001 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQH--P 1077 (1493)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~--~ 1077 (1493)
..+...+... +.+..+.++.. .... .++ .+....... ....+..++... .
T Consensus 628 ~~V~eDI~~~----------------------L~l~~~~vfr~--Sf~R-pNL--~y~Vv~k~kk~le~L~~~I~~~~~~ 680 (1195)
T PLN03137 628 ASVKEDVVQA----------------------LGLVNCVVFRQ--SFNR-PNL--WYSVVPKTKKCLEDIDKFIKENHFD 680 (1195)
T ss_pred HHHHHHHHHH----------------------cCCCCcEEeec--ccCc-cce--EEEEeccchhHHHHHHHHHHhcccC
Confidence 8776544222 22222222111 0101 111 122222222 223445555433 5
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCC
Q psy16310 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157 (1493)
Q Consensus 1078 ~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s 1157 (1493)
..+||||+|+..|+.++..|...|+.+..|||+|++.+|..++++|+.|+++|||||++++||||+|+|++||||++|.+
T Consensus 681 esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkS 760 (1195)
T PLN03137 681 ECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKS 760 (1195)
T ss_pred CCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHH
Q psy16310 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194 (1493)
Q Consensus 1158 ~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~ 1194 (1493)
++.|+||+|||||.|..|.|++|+...|...++.+..
T Consensus 761 iEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 761 IEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred HHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 9999999999999999999999999888877777764
No 74
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.6e-45 Score=471.80 Aligned_cols=441 Identities=17% Similarity=0.168 Sum_probs=320.4
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhcc-----CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 773 FNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 773 l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~-----~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
+..+..+++.+.+ ++| .|||+|..||+.++.+ ++|++++||||||||++|++|++..+..
T Consensus 434 ~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------------- 499 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------------- 499 (926)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-------------
Confidence 3455666776665 577 5999999999976643 3799999999999999999999987632
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---Hh
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---IL 923 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l 923 (1493)
+.+++||+||++||.|+++.|+.++..+++++..++|+.+...+.. .+
T Consensus 500 -----------------------------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l 550 (926)
T TIGR00580 500 -----------------------------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKEL 550 (926)
T ss_pred -----------------------------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHH
Confidence 3579999999999999999999998888999999999887554433 33
Q ss_pred cC-CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 924 NK-CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 924 ~~-~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
.. .++||||||..+ .. . ..++++++|||||+|++ .......+..+ ..+.|+++||||+.+.
T Consensus 551 ~~g~~dIVIGTp~ll----~~-~---v~f~~L~llVIDEahrf-----gv~~~~~L~~~-----~~~~~vL~~SATpipr 612 (926)
T TIGR00580 551 ASGKIDILIGTHKLL----QK-D---VKFKDLGLLIIDEEQRF-----GVKQKEKLKEL-----RTSVDVLTLSATPIPR 612 (926)
T ss_pred HcCCceEEEchHHHh----hC-C---CCcccCCEEEeeccccc-----chhHHHHHHhc-----CCCCCEEEEecCCCHH
Confidence 33 589999999532 22 2 24678999999999995 22334444444 3568999999998654
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEE
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IV 1082 (1493)
...... .+...+..+...... ...+..... ..........+......+++++|
T Consensus 613 tl~~~l------------------------~g~~d~s~I~~~p~~--R~~V~t~v~-~~~~~~i~~~i~~el~~g~qv~i 665 (926)
T TIGR00580 613 TLHMSM------------------------SGIRDLSIIATPPED--RLPVRTFVM-EYDPELVREAIRRELLRGGQVFY 665 (926)
T ss_pred HHHHHH------------------------hcCCCcEEEecCCCC--ccceEEEEE-ecCHHHHHHHHHHHHHcCCeEEE
Confidence 322110 011122222211110 011222111 11111111111112235789999
Q ss_pred EecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC-Chh
Q psy16310 1083 FCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR-TSE 1159 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~-s~~ 1159 (1493)
|||++.+++.++..|+.. ++++..+||+|++.+|..++++|++|+++|||||+++++|||+|++++||++++|. +..
T Consensus 666 f~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls 745 (926)
T TIGR00580 666 VHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLA 745 (926)
T ss_pred EECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHH
Confidence 999999999999999985 77899999999999999999999999999999999999999999999999999986 678
Q ss_pred HHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCch
Q psy16310 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN 1239 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 1239 (1493)
+|+||+||+||.|+.|.|++++.+.+. +.....+|+.+..+...+++++..++.+.
T Consensus 746 ~l~Qr~GRvGR~g~~g~aill~~~~~~------------------------l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl 801 (926)
T TIGR00580 746 QLYQLRGRVGRSKKKAYAYLLYPHQKA------------------------LTEDAQKRLEAIQEFSELGAGFKIALHDL 801 (926)
T ss_pred HHHHHhcCCCCCCCCeEEEEEECCccc------------------------CCHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 999999999999999999999865431 11345677777888888889999999999
Q ss_pred HHHHHhhhhhhcccccchhccccCChhHHHHHHHHHHhhcC-C------CCCchhHHHHHHHHHhhhcc--hhhhhhhhh
Q psy16310 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-L------PDFPIDESVLSLIKKRIDLA--KSIEYLESK 1310 (1493)
Q Consensus 1240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 1310 (1493)
-+|++|+..+..|+| ++...+|++|.+|+++..++++ - ....++..+.++|+..+-.+ ..+.++. +
T Consensus 802 ~~Rg~G~~lG~~QsG----~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ip~~yi~~~~~r~~~y~-~ 876 (926)
T TIGR00580 802 EIRGAGNLLGEEQSG----HIESIGFDLYMELLEEAIEELKGGKPPKLEEETDIELPYSAFIPDDYIADDSLRLEFYK-R 876 (926)
T ss_pred HhcCCcCCCCCcccC----chhhccHHHHHHHHHHHHHHHhcCCCCCCCCceEEecCCCCcCChhhcCChHHHHHHHH-H
Confidence 999999999999999 8899999999999998887554 1 13345556778887765222 2333332 1
Q ss_pred hhcC----CCchhHHHhhhhcccc
Q psy16310 1311 IKKN----RPDNWLEKAAKDMDII 1330 (1493)
Q Consensus 1311 ~~~~----~~~~~~~~~a~~~~~~ 1330 (1493)
.... ..++-.+.+-+.||-+
T Consensus 877 ~~~~~~~~~~~~~~~e~~drfg~~ 900 (926)
T TIGR00580 877 IASAETEEELEKIRDELIDRFGPL 900 (926)
T ss_pred HhcCCCHHHHHHHHHHHHHhcCCC
Confidence 1111 1233444666666665
No 75
>KOG4284|consensus
Probab=100.00 E-value=1.5e-45 Score=418.08 Aligned_cols=357 Identities=25% Similarity=0.452 Sum_probs=290.7
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
.....|+++-|...++..|...+|..||++|..||| +.+.+.|+||+|..|+|||++|.+.+++.+..
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP-~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~----------- 89 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIP-AIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS----------- 89 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhh-hhhcccceEEEecCCCCceEEEEeeeehhcCc-----------
Confidence 345679999999999999999999999999999999 66688999999999999999999988876632
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC-CCCeEEEEEEcCCCHHHHHHHh
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~-~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
....+.++||+||||+|.|+..++..++. +.|+++..++||+........+
T Consensus 90 ----------------------------~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl 141 (980)
T KOG4284|consen 90 ----------------------------RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL 141 (980)
T ss_pred ----------------------------ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh
Confidence 23456799999999999999999999875 4689999999999988887777
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
.. ++|+|+||||+..++..+.+++. +++++|+||||.|++ .+|.+++.-|+..+
T Consensus 142 k~-~rIvIGtPGRi~qL~el~~~n~s---~vrlfVLDEADkL~~t~sfq~~In~ii~sl--------------------- 196 (980)
T KOG4284|consen 142 KQ-TRIVIGTPGRIAQLVELGAMNMS---HVRLFVLDEADKLMDTESFQDDINIIINSL--------------------- 196 (980)
T ss_pred hh-ceEEecCchHHHHHHHhcCCCcc---ceeEEEeccHHhhhchhhHHHHHHHHHHhc---------------------
Confidence 65 58999999999999998877655 899999999999998 57999999999887
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccc
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1493)
+..+|++.||||.|..+.+++.-....+........++..--+.
T Consensus 197 ------------P~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~Gik------------------------ 240 (980)
T KOG4284|consen 197 ------------PQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIK------------------------ 240 (980)
T ss_pred ------------chhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechh------------------------
Confidence 45589999999999988887754332222222222221111000
Q ss_pred hhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCC-
Q psy16310 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP- 544 (1493)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~- 544 (1493)
+...... .+. ........|...|.+++...+
T Consensus 241 Qyv~~~~--------------s~n----------------------------------nsveemrlklq~L~~vf~~ipy 272 (980)
T KOG4284|consen 241 QYVVAKC--------------SPN----------------------------------NSVEEMRLKLQKLTHVFKSIPY 272 (980)
T ss_pred heeeecc--------------CCc----------------------------------chHHHHHHHHHHHHHHHhhCch
Confidence 0000000 000 000001124455556665554
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s 624 (1493)
.++||||++...|+-++.+|...|+.+..+.|.|+|.+|..+++.+|.-.++|||+||+.+||||-|+|++|||.|+|.+
T Consensus 273 ~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d 352 (980)
T KOG4284|consen 273 VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPAD 352 (980)
T ss_pred HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 625 ~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
-.+|.||+|||||.|..|.+++|+.....
T Consensus 353 ~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 353 EETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999987665
No 76
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.9e-44 Score=467.15 Aligned_cols=408 Identities=17% Similarity=0.190 Sum_probs=305.4
Q ss_pred CCHHHHH-HHHHCCCCCCcHHHHhhHHHhhcc-----CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 775 IPETIIR-ALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 775 l~~~l~~-~l~~~g~~~pt~iQ~~~i~~~l~~-----~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
.+..+.+ ....++| .||++|.+||+.++.+ .+|+++|||||||||++|+++++..+.
T Consensus 585 ~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------------- 647 (1147)
T PRK10689 585 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------------- 647 (1147)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----------------
Confidence 3444444 4566777 7999999999966643 279999999999999999988876542
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc----
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN---- 924 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~---- 924 (1493)
.+.+++||+||++||.|+++.|+.++...++++.+++|+.+...+...+.
T Consensus 648 --------------------------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~ 701 (1147)
T PRK10689 648 --------------------------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAE 701 (1147)
T ss_pred --------------------------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 34579999999999999999999987778899999999988777655442
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
..++|+||||+.+ .. . ..+.++++|||||+|++ |+. ....+..+ +.++|+++||||+.+...
T Consensus 702 g~~dIVVgTp~lL----~~-~---v~~~~L~lLVIDEahrf---G~~--~~e~lk~l-----~~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 702 GKIDILIGTHKLL----QS-D---VKWKDLGLLIVDEEHRF---GVR--HKERIKAM-----RADVDILTLTATPIPRTL 763 (1147)
T ss_pred CCCCEEEECHHHH----hC-C---CCHhhCCEEEEechhhc---chh--HHHHHHhc-----CCCCcEEEEcCCCCHHHH
Confidence 4689999999754 21 1 23568999999999996 332 23444444 467899999999875543
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEe
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 1084 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~ 1084 (1493)
..... .+.++..+...... ...+......+........+... ...+++++|||
T Consensus 764 ~l~~~------------------------gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~e-l~r~gqv~vf~ 816 (1147)
T PRK10689 764 NMAMS------------------------GMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILRE-ILRGGQVYYLY 816 (1147)
T ss_pred HHHHh------------------------hCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHH-HhcCCeEEEEE
Confidence 32211 11222222221111 01122221111111111111111 22468999999
Q ss_pred cchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC-CChhHH
Q psy16310 1085 NSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP-RTSEIY 1161 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p-~s~~~y 1161 (1493)
|++..++.++..|... +.++..+||+|++.+|.+++.+|++|+++|||||+++++|||+|++++||..+.. .+..+|
T Consensus 817 n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~ 896 (1147)
T PRK10689 817 NDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 (1147)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHH
Confidence 9999999999999987 7789999999999999999999999999999999999999999999999965543 256689
Q ss_pred HHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCchHH
Q psy16310 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWL 1241 (1493)
Q Consensus 1162 iqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 1241 (1493)
+||+||+||.|+.|.|++++.+.. .+.....+|+.+..+...+++++..++.+..+
T Consensus 897 ~Qr~GRvGR~g~~g~a~ll~~~~~------------------------~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~ 952 (1147)
T PRK10689 897 HQLRGRVGRSHHQAYAWLLTPHPK------------------------AMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 (1147)
T ss_pred HHHhhccCCCCCceEEEEEeCCCc------------------------ccCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Confidence 999999999999999999874432 11234567888888999999999999999999
Q ss_pred HHHhhhhhhcccccchhccccCChhHHHHHHHHHHhhcC-C----------CCCchhHHHHHHHHHhh
Q psy16310 1242 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-L----------PDFPIDESVLSLIKKRI 1298 (1493)
Q Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~ 1298 (1493)
|++|+..+.+|+| ++...||++|.+|+++...++. . ....++..+.++|+..+
T Consensus 953 rg~g~~~g~~q~g----~~~~~g~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y 1016 (1147)
T PRK10689 953 RGAGELLGEEQSG----QMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 (1147)
T ss_pred cCCccCCCCccCC----CccccCHHHHHHHHHHHHHHHhcCCCcccccccCCceEEecCCCccCChhh
Confidence 9999999999999 8999999999999998887543 1 12345556778887665
No 77
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=6.2e-44 Score=445.72 Aligned_cols=347 Identities=20% Similarity=0.258 Sum_probs=253.4
Q ss_pred ccc--ccCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 152 EWV--KFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 152 ~f~--~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
.|. .++....+...+.. +||..++|+|.++|+ ++..|+|+|+++|||+|||++|+||++..
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~-aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------- 499 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIIN-ATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------- 499 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHH-HHHcCCCEEEEcCCCccHHHHHHHHHHHc---------------
Confidence 365 35666667666654 599999999999998 55688999999999999999999999731
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc-
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN- 307 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~- 307 (1493)
+..+|||+|+++|+.++...+... ++.+..++|+.....+...+.
T Consensus 500 ------------------------------~GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~ 545 (1195)
T PLN03137 500 ------------------------------PGITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQE 545 (1195)
T ss_pred ------------------------------CCcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHH
Confidence 135999999999999776666553 788999999988776655442
Q ss_pred -----CCCCEEEeCcHHHHH--HHHcCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccc
Q psy16310 308 -----KCPHILVATPGRLWE--FIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIE 378 (1493)
Q Consensus 308 -----~~~~IiV~TP~~L~~--~l~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~ 378 (1493)
..++|||+||++|.. .+......+.....+.+|||||||++++|| |.+.+..+-.....
T Consensus 546 l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~------------ 613 (1195)
T PLN03137 546 LSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK------------ 613 (1195)
T ss_pred HHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh------------
Confidence 467999999999852 222111111122358899999999999997 66666543211100
Q ss_pred cCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhh
Q psy16310 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458 (1493)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1493)
.+..++++||||++..+...+.. .+....+....
T Consensus 614 -------------------fp~vPilALTATAT~~V~eDI~~----------------------~L~l~~~~vfr----- 647 (1195)
T PLN03137 614 -------------------FPNIPVLALTATATASVKEDVVQ----------------------ALGLVNCVVFR----- 647 (1195)
T ss_pred -------------------CCCCCeEEEEecCCHHHHHHHHH----------------------HcCCCCcEEee-----
Confidence 12367899999999876543211 11100000000
Q ss_pred ccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHH
Q psy16310 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 538 (1493)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 538 (1493)
....+.. +++ .+..........+..
T Consensus 648 -------------~Sf~RpN-L~y-----------------------------------------~Vv~k~kk~le~L~~ 672 (1195)
T PLN03137 648 -------------QSFNRPN-LWY-----------------------------------------SVVPKTKKCLEDIDK 672 (1195)
T ss_pred -------------cccCccc-eEE-----------------------------------------EEeccchhHHHHHHH
Confidence 0000000 000 000000001123334
Q ss_pred HHhhC--CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEE
Q psy16310 539 FILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616 (1493)
Q Consensus 539 ~l~~~--~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~V 616 (1493)
++... ...+||||.|+..|+.++..|...|+.+..|||+|++.+|..+++.|+.|+++|||||+++++|||+|+|++|
T Consensus 673 ~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~V 752 (1195)
T PLN03137 673 FIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV 752 (1195)
T ss_pred HHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEE
Confidence 44322 4578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 617 I~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
||||+|.++..|+||+|||||.|.+|.|++||+..|......+..
T Consensus 753 IHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 753 IHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred EEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988877666643
No 78
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8e-44 Score=438.53 Aligned_cols=330 Identities=21% Similarity=0.289 Sum_probs=250.1
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
.+||..|+|+|.++|+. +..|+|+++++|||||||++|++|++..
T Consensus 6 ~~g~~~~r~~Q~~ai~~-~l~g~dvlv~apTGsGKTl~y~lp~l~~---------------------------------- 50 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINA-VLLGRDCFVVMPTGGGKSLCYQLPALCS---------------------------------- 50 (470)
T ss_pred hcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCCcHhHHHHHHHHHc----------------------------------
Confidence 36999999999999995 4577899999999999999999998731
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH----hcCCCcEEEECcHHHHHH
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCPHILVATPGRLWEF 940 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~IlV~TP~rl~~~ 940 (1493)
+..+|||+||++|+.|+...+..+ ++.+..+.|+.....+... ....++|+++||+++...
T Consensus 51 -----------~~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~ 115 (470)
T TIGR00614 51 -----------DGITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSAS 115 (470)
T ss_pred -----------CCcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCc
Confidence 125899999999999999998765 4788888888776544322 234579999999997532
Q ss_pred HH-hCcCccccccceeEEEecccchhccCCC--hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcc
Q psy16310 941 IQ-LGHFHLTELYKINYLVIDETDRMIESGH--FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSK 1017 (1493)
Q Consensus 941 l~-~~~~~~~~l~~l~~lVlDEah~ll~~~~--~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~ 1017 (1493)
.. ... +....++++|||||||++++||+ .+.+..+...... .+..+++++|||+++.+...+..
T Consensus 116 ~~~~~~--l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~---~~~~~~l~lTAT~~~~~~~di~~-------- 182 (470)
T TIGR00614 116 NRLLQT--LEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQK---FPNVPIMALTATASPSVREDILR-------- 182 (470)
T ss_pred hhHHHH--HHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHH---cCCCceEEEecCCCHHHHHHHHH--------
Confidence 20 001 11345789999999999999874 4554443221111 24678999999999776544322
Q ss_pred cccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH-hCC-CcEEEEecchhhHHHHHH
Q psy16310 1018 KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHP-GRTLVFCNSISSVKRLTQ 1095 (1493)
Q Consensus 1018 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~-~~~IVF~~s~~~~~~l~~ 1095 (1493)
.+.+..+..+..... ..++ ...+..........+..++. ... ..+||||+|++.|+.++.
T Consensus 183 --------------~l~l~~~~~~~~s~~---r~nl-~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~ 244 (470)
T TIGR00614 183 --------------QLNLKNPQIFCTSFD---RPNL-YYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTA 244 (470)
T ss_pred --------------HcCCCCCcEEeCCCC---CCCc-EEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHH
Confidence 122222222211100 0111 11111111233444555555 333 456999999999999999
Q ss_pred HHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCC
Q psy16310 1096 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175 (1493)
Q Consensus 1096 ~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G 1175 (1493)
.|...|+.+..|||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||||++|.+.+.|+||+|||||.|..|
T Consensus 245 ~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~ 324 (470)
T TIGR00614 245 SLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPS 324 (470)
T ss_pred HHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCHHHHHHHHHh
Q psy16310 1176 LTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1176 ~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
.|++|+++.|...++.+...
T Consensus 325 ~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 325 ECHLFYAPADINRLRRLLME 344 (470)
T ss_pred eEEEEechhHHHHHHHHHhc
Confidence 99999999999888887654
No 79
>KOG0952|consensus
Probab=100.00 E-value=3.2e-44 Score=429.92 Aligned_cols=384 Identities=20% Similarity=0.204 Sum_probs=272.2
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
-.+|..+..+|+.++|.+...+.|+|||||||||||.+|+|.||+.+.++...
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~--------------------------- 157 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQ--------------------------- 157 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccc---------------------------
Confidence 36788899999999999999999999999999999999999999988641110
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcC
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~ 327 (1493)
..-.....++++|+|+++||..+.+.+.+-...+|++|..++|++...... . ..++|||+||+.+ |.+.+.
T Consensus 158 -----~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i--~~tqiiVTTPEKw-DvvTRk 228 (1230)
T KOG0952|consen 158 -----GDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-I--ADTQIIVTTPEKW-DVVTRK 228 (1230)
T ss_pred -----cccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH-H--HhcCEEEecccce-eeeeee
Confidence 122346789999999999999999999888888899999999998766554 2 2369999999994 666544
Q ss_pred Cc-cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEE
Q psy16310 328 HF-HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406 (1493)
Q Consensus 328 ~~-~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~ 406 (1493)
.. +...++.+++|||||+| |+...+++.++.|+.+..... .......++|++
T Consensus 229 ~~~d~~l~~~V~LviIDEVH-lLhd~RGpvlEtiVaRtlr~v--------------------------essqs~IRivgL 281 (1230)
T KOG0952|consen 229 SVGDSALFSLVRLVIIDEVH-LLHDDRGPVLETIVARTLRLV--------------------------ESSQSMIRIVGL 281 (1230)
T ss_pred eccchhhhhheeeEEeeeeh-hhcCcccchHHHHHHHHHHHH--------------------------HhhhhheEEEEe
Confidence 32 23345679999999999 556789999999998875321 122455799999
Q ss_pred eeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhc
Q psy16310 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 486 (1493)
Q Consensus 407 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1493)
|||+|+. ..++.|+.......+........+..+.+..+.++.. .....
T Consensus 282 SATlPN~------------------------eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~-~~~~~------ 330 (1230)
T KOG0952|consen 282 SATLPNY------------------------EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGK-KNRQQ------ 330 (1230)
T ss_pred eccCCCH------------------------HHHHHHhcCCCccceeeecccccccceeeeEEeeecc-cchhh------
Confidence 9999863 2344444443222111111111111111111111110 00000
Q ss_pred CCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHh
Q psy16310 487 HPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 566 (1493)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~ 566 (1493)
...+ .......+.++ ...+.+++|||++|..+.+.++.|..
T Consensus 331 ------~~~~--------------------------------d~~~~~kv~e~-~~~g~qVlvFvhsR~~Ti~tA~~l~~ 371 (1230)
T KOG0952|consen 331 ------KKNI--------------------------------DEVCYDKVVEF-LQEGHQVLVFVHSRNETIRTAKKLRE 371 (1230)
T ss_pred ------hhhH--------------------------------HHHHHHHHHHH-HHcCCeEEEEEecChHHHHHHHHHHH
Confidence 0000 00001111111 23467999999999999999988843
Q ss_pred c-----------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE----Ee
Q psy16310 567 L-----------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI----HY 619 (1493)
Q Consensus 567 ~-----------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI----~y 619 (1493)
. ..+++.+|+||...+|..+.+.|..|.++||+||..+++|+++|+--++| .|
T Consensus 372 ~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~y 451 (1230)
T KOG0952|consen 372 RAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVY 451 (1230)
T ss_pred HHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCccc
Confidence 2 25567899999999999999999999999999999999999999766666 35
Q ss_pred cCC------CChHHHHHHHhccccC--CCCCeEEEEecCCcchhhhhhhhhhccchHHHHHHHhhhcccccch
Q psy16310 620 HVP------RTSEIYIHRSGRTARA--NNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDIN 684 (1493)
Q Consensus 620 d~P------~s~~~yiQR~GRagR~--g~~G~~i~l~~~~e~~~~~~l~~~~~~~~e~~e~~~~~~~~~e~~~ 684 (1493)
|.- .+..+.+|..|||||. +..|.++++.+.+-+.+|..+.....+.+...-....+....|...
T Consensus 452 dsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~L 524 (1230)
T KOG0952|consen 452 DSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISL 524 (1230)
T ss_pred ccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheee
Confidence 544 3567889999999994 5569999999999999998888777777666555555555544433
No 80
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.6e-42 Score=435.35 Aligned_cols=338 Identities=20% Similarity=0.330 Sum_probs=254.5
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHH
Q psy16310 775 IPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 853 (1493)
Q Consensus 775 l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 853 (1493)
++....+.|++ +||..|+|+|.++|+. +..|+|+++++|||+|||++|++|++..
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~-il~g~dvlv~apTGsGKTl~y~lpal~~----------------------- 64 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDA-VLSGRDCLVVMPTGGGKSLCYQIPALVL----------------------- 64 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHHHc-----------------------
Confidence 33444444544 6999999999999995 5578999999999999999999998732
Q ss_pred HHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH----hcCCCcE
Q psy16310 854 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCPHI 929 (1493)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~I 929 (1493)
...+|||+||++|+.|+.+.++.+ ++.+.++.++.....+... .....++
T Consensus 65 ----------------------~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~i 118 (607)
T PRK11057 65 ----------------------DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKL 118 (607)
T ss_pred ----------------------CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcE
Confidence 125899999999999999998875 4778888888776654332 2345789
Q ss_pred EEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCC--hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGH--FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 930 lV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~--~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+++||++|........+ ...++++|||||||++++||+ .+.+..+-. +... .+..+++++|||++......+
T Consensus 119 l~~tPe~l~~~~~~~~l---~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~-l~~~--~p~~~~v~lTAT~~~~~~~di 192 (607)
T PRK11057 119 LYIAPERLMMDNFLEHL---AHWNPALLAVDEAHCISQWGHDFRPEYAALGQ-LRQR--FPTLPFMALTATADDTTRQDI 192 (607)
T ss_pred EEEChHHhcChHHHHHH---hhCCCCEEEEeCccccccccCcccHHHHHHHH-HHHh--CCCCcEEEEecCCChhHHHHH
Confidence 99999998732111111 123689999999999999874 444443322 2111 246789999999997654433
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh-CCCcEEEEecc
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNS 1086 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~IVF~~s 1086 (1493)
. ..+.+..+...... .. ..++ .+...........+..++.. .++++||||+|
T Consensus 193 ~----------------------~~l~l~~~~~~~~~--~~-r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~t 245 (607)
T PRK11057 193 V----------------------RLLGLNDPLIQISS--FD-RPNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNS 245 (607)
T ss_pred H----------------------HHhCCCCeEEEECC--CC-CCcc--eeeeeeccchHHHHHHHHHhcCCCCEEEEECc
Confidence 1 11222222221100 00 0111 11222223344455555544 36789999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHh
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~G 1166 (1493)
++.|+.++..|...|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+|+|++|||||+|.+.++|+||+|
T Consensus 246 r~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~G 325 (607)
T PRK11057 246 RAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETG 325 (607)
T ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCCCHHHHHHHHHh
Q psy16310 1167 RTARANNEGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1167 R~gR~g~~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
||||.|..|.|++|+++.|...++++...
T Consensus 326 RaGR~G~~~~~ill~~~~d~~~~~~~~~~ 354 (607)
T PRK11057 326 RAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (607)
T ss_pred hccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999999998887777543
No 81
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.7e-42 Score=445.68 Aligned_cols=347 Identities=22% Similarity=0.283 Sum_probs=261.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
.|++++|++.+++++.+.||.+|+|+|.+||+..+..|+|++++||||||||++|.+|+++++.
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------------- 65 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------------- 65 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh----------------
Confidence 5889999999999999999999999999999976778999999999999999999999998773
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
.+.++|||+||++||.|+++.|+.++. .++++..++|+...... . ...++
T Consensus 66 --------------------------~~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~--~-l~~~~ 115 (737)
T PRK02362 66 --------------------------RGGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE--W-LGDND 115 (737)
T ss_pred --------------------------cCCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc--c-cCCCC
Confidence 234699999999999999999998753 58999999998764432 1 23579
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc--hHhH
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS--LKNS 1006 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~--~~~~ 1006 (1493)
|+|+||+++..+++.+. ..+.++++||+||+|.+.+.+++..++.++.++... ....|++++|||+++. +..+
T Consensus 116 IiV~Tpek~~~llr~~~---~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~--~~~~qii~lSATl~n~~~la~w 190 (737)
T PRK02362 116 IIVATSEKVDSLLRNGA---PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRL--NPDLQVVALSATIGNADELADW 190 (737)
T ss_pred EEEECHHHHHHHHhcCh---hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhc--CCCCcEEEEcccCCCHHHHHHH
Confidence 99999999988887543 246789999999999999989999999888877532 3568999999999853 3333
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHHhCCCcEEEEec
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTLVFCN 1085 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~IVF~~ 1085 (1493)
+..... .....+. .+.. .+.......... ....+.... ......+... ...++++||||+
T Consensus 191 l~~~~~------~~~~rpv--------~l~~--~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~LVF~~ 251 (737)
T PRK02362 191 LDAELV------DSEWRPI--------DLRE--GVFYGGAIHFDD--SQREVEVPSKDDTLNLVLDT-LEEGGQCLVFVS 251 (737)
T ss_pred hCCCcc------cCCCCCC--------CCee--eEecCCeecccc--ccccCCCccchHHHHHHHHH-HHcCCCeEEEEe
Confidence 211000 0000000 0000 000000000000 000011111 1111222222 235789999999
Q ss_pred chhhHHHHHHHHHhc------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCC
Q psy16310 1086 SISSVKRLTQLLTML------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129 (1493)
Q Consensus 1086 s~~~~~~l~~~L~~~------------------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~ 1129 (1493)
|+..|+.++..|... ..++..|||+|++.+|..+++.|++|.++
T Consensus 252 sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~ 331 (737)
T PRK02362 252 SRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK 331 (737)
T ss_pred CHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe
Confidence 999999988887543 13678899999999999999999999999
Q ss_pred eEEeehhhhccccCCCccEEEE----ec-----CCCChhHHHHHHhccCCCCCC--CeEEEEecCCC
Q psy16310 1130 ILLATDVAARGLDIPGIEHVIH----YH-----VPRTSEIYIHRSGRTARANNE--GLTLVLIESDE 1185 (1493)
Q Consensus 1130 VLVaTdv~~~GiDip~v~~VI~----~d-----~p~s~~~yiqr~GR~gR~g~~--G~~i~l~~~~e 1185 (1493)
|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.|.. |.+++++.+.+
T Consensus 332 VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 332 VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 9999999999999999999997 76 688999999999999999864 99999987653
No 82
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.8e-42 Score=423.71 Aligned_cols=329 Identities=21% Similarity=0.294 Sum_probs=241.9
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
.+||..|+|+|.++|+ ++..|+|+++++|||||||++|++|++.
T Consensus 6 ~~g~~~~r~~Q~~ai~-~~l~g~dvlv~apTGsGKTl~y~lp~l~----------------------------------- 49 (470)
T TIGR00614 6 VFGLSSFRPVQLEVIN-AVLLGRDCFVVMPTGGGKSLCYQLPALC----------------------------------- 49 (470)
T ss_pred hcCCCCCCHHHHHHHH-HHHcCCCEEEEcCCCCcHhHHHHHHHHH-----------------------------------
Confidence 3699999999999998 5557889999999999999999999873
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH----hcCCCCEEEeCcHHHHHH
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCPHILVATPGRLWEF 323 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~----l~~~~~IiV~TP~~L~~~ 323 (1493)
.+..+|||+||++|+.|+...+..+ ++.+..+.|+......... ....++|+++||+++...
T Consensus 50 ----------~~~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~ 115 (470)
T TIGR00614 50 ----------SDGITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSAS 115 (470)
T ss_pred ----------cCCcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCc
Confidence 1235899999999999999998764 6778888888766543222 234579999999997532
Q ss_pred HH-cCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCC
Q psy16310 324 IQ-LGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQP 400 (1493)
Q Consensus 324 l~-~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1493)
.. ... +..+.++++|||||||++++|+ |.+.+..+...... .+.
T Consensus 116 ~~~~~~--l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-------------------------------~~~ 162 (470)
T TIGR00614 116 NRLLQT--LEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQK-------------------------------FPN 162 (470)
T ss_pred hhHHHH--HHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHH-------------------------------cCC
Confidence 20 001 1024578999999999999886 45555443221110 133
Q ss_pred ceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhh
Q psy16310 401 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480 (1493)
Q Consensus 401 ~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1493)
.+++++|||+++.+...+. ..+....+..... ...
T Consensus 163 ~~~l~lTAT~~~~~~~di~----------------------~~l~l~~~~~~~~------------------s~~----- 197 (470)
T TIGR00614 163 VPIMALTATASPSVREDIL----------------------RQLNLKNPQIFCT------------------SFD----- 197 (470)
T ss_pred CceEEEecCCCHHHHHHHH----------------------HHcCCCCCcEEeC------------------CCC-----
Confidence 6799999999976543221 1111111100000 000
Q ss_pred HHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHh-hCC-CcEEEEecchhhHH
Q psy16310 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHP-GRTLVFCNSISSVK 558 (1493)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~-~~~IIF~~s~~~a~ 558 (1493)
.+.+ ...+..........+..++. ..+ ..+||||+|++.++
T Consensus 198 -----------------------r~nl--------------~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 198 -----------------------RPNL--------------YYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred -----------------------CCCc--------------EEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHH
Confidence 0000 00000000112223444444 333 45699999999999
Q ss_pred HHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccC
Q psy16310 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638 (1493)
Q Consensus 559 ~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~ 638 (1493)
.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.++..|+||+|||||.
T Consensus 241 ~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~ 320 (470)
T TIGR00614 241 QVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRD 320 (470)
T ss_pred HHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCcchhhhhhhh
Q psy16310 639 NNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 639 g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
|.+|.|++|+++.|...+..+..
T Consensus 321 G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 321 GLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999887777654
No 83
>KOG0329|consensus
Probab=100.00 E-value=1.1e-43 Score=361.16 Aligned_cols=314 Identities=28% Similarity=0.497 Sum_probs=258.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
+.|.+|-|.|++++++-+.||++|+.+|.+|||.++. |.|++.+|..|.|||.+|++.-++.+-
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqail-gmdvlcqaksgmgktavfvl~tlqqie--------------- 105 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQIE--------------- 105 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhh-cchhheecccCCCceeeeehhhhhhcC---------------
Confidence 4588999999999999999999999999999998885 579999999999999999999998762
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
.......+|++|+|||||.||.+...++.+++ ++++.+++||.+.......+.+.
T Consensus 106 ------------------------pv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~ 161 (387)
T KOG0329|consen 106 ------------------------PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNC 161 (387)
T ss_pred ------------------------CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCC
Confidence 22345679999999999999999999999997 58999999999999999999999
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
|+|+||||||++.+.+...+ .+.+++.+|+||||.|+++ ..+.++..|+.. +|...|+++||||++.++..
T Consensus 162 PhivVgTPGrilALvr~k~l---~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~-----tp~~KQvmmfsatlskeiRp 233 (387)
T KOG0329|consen 162 PHIVVGTPGRILALVRNRSL---NLKNVKHFVLDECDKMLEQLDMRRDVQEIFRM-----TPHEKQVMMFSATLSKEIRP 233 (387)
T ss_pred CeEEEcCcHHHHHHHHhccC---chhhcceeehhhHHHHHHHHHHHHHHHHHhhc-----CcccceeeeeeeecchhhHH
Confidence 99999999999999987765 4568899999999999875 445667777654 36889999999999988776
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEe
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFC 1084 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~ 1084 (1493)
.+..+...+-. ++--.+...+...+.++|+.....+|...+..++... -.+++||+
T Consensus 234 vC~kFmQdPmE-----------------------i~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFv 290 (387)
T KOG0329|consen 234 VCHKFMQDPME-----------------------IFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFV 290 (387)
T ss_pred HHHhhhcCchh-----------------------hhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEee
Confidence 55433221111 0111112234456777778788888888888877644 56899999
Q ss_pred cchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHH
Q psy16310 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr 1164 (1493)
.+... | + | ..+ ||||++++||+||..|+.|||||+|.+..+|+||
T Consensus 291 Ksv~R-------l--------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHr 335 (387)
T KOG0329|consen 291 KSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHR 335 (387)
T ss_pred ehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHH
Confidence 88665 0 0 3 123 8999999999999999999999999999999999
Q ss_pred HhccCCCCCCCeEEEEecCCCHH
Q psy16310 1165 SGRTARANNEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1165 ~GR~gR~g~~G~~i~l~~~~e~~ 1187 (1493)
+|||||.|..|.+|.|++..+..
T Consensus 336 v~rAgrfGtkglaitfvs~e~da 358 (387)
T KOG0329|consen 336 VARAGRFGTKGLAITFVSDENDA 358 (387)
T ss_pred hhhhhccccccceeehhcchhhH
Confidence 99999999999999999876543
No 84
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2e-41 Score=441.26 Aligned_cols=354 Identities=21% Similarity=0.298 Sum_probs=254.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHH
Q psy16310 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854 (1493)
Q Consensus 775 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 854 (1493)
+++.+.+.+.+ +|..|||+|.++||. +..|+|++++||||||||++|.+|+++.++.....
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~-il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~----------------- 78 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPL-IHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE----------------- 78 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHH-HHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc-----------------
Confidence 56777676655 899999999999995 56889999999999999999999999988642110
Q ss_pred HHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHH-------h----hCCC-CcEEEEEEcCCCHHHHHHH
Q psy16310 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD-------A----GKYT-PVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~-------~----~~~~-~~~v~~~~gg~~~~~~~~~ 922 (1493)
.....+.++|||+||++|+.|+++.+.. + +... ++++.+.+|+.+...+...
T Consensus 79 ----------------~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~ 142 (876)
T PRK13767 79 ----------------GELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKM 142 (876)
T ss_pred ----------------cCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHH
Confidence 0113467899999999999999886653 2 2233 6889999999998888888
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
+.+.++|+|+||++|..++..... ...+.++++|||||||.+.+..++..+...+.++.... ....|++++|||+++.
T Consensus 143 l~~~p~IlVtTPE~L~~ll~~~~~-~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-~~~~q~IglSATl~~~ 220 (876)
T PRK13767 143 LKKPPHILITTPESLAILLNSPKF-REKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA-GGEFVRIGLSATIEPL 220 (876)
T ss_pred HhCCCCEEEecHHHHHHHhcChhH-HHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc-CCCCeEEEEecccCCH
Confidence 888899999999999877754332 12467899999999999998888877777777665332 3568999999999852
Q ss_pred --hHhHHhhhcc--CcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHH---Hh
Q psy16310 1003 --LKNSLNLKKG--QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQ 1075 (1493)
Q Consensus 1003 --~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~ 1075 (1493)
+..++..... ......+... .......+.+.. . ...+ ...........++..+ ..
T Consensus 221 ~~va~~L~~~~~~~~~r~~~iv~~-----------~~~k~~~i~v~~--p-~~~l----~~~~~~~~~~~l~~~L~~~i~ 282 (876)
T PRK13767 221 EEVAKFLVGYEDDGEPRDCEIVDA-----------RFVKPFDIKVIS--P-VDDL----IHTPAEEISEALYETLHELIK 282 (876)
T ss_pred HHHHHHhcCccccCCCCceEEEcc-----------CCCccceEEEec--c-Cccc----cccccchhHHHHHHHHHHHHh
Confidence 2222210000 0000000000 000000000000 0 0000 0011111111222222 23
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhc------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEE
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTML------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 1149 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~V 1149 (1493)
..+++||||||+..|+.++..|... +..+..|||+|++.+|..++++|++|+++|||||+++++|||+|+|++|
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~V 362 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLV 362 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEE
Confidence 4678999999999999999999873 4678999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhHHHHHHhccCCC-CCCCeEEEEecC
Q psy16310 1150 IHYHVPRTSEIYIHRSGRTARA-NNEGLTLVLIES 1183 (1493)
Q Consensus 1150 I~~d~p~s~~~yiqr~GR~gR~-g~~G~~i~l~~~ 1183 (1493)
|+|+.|.+...|+||+||+||. |..+.+++++..
T Consensus 363 I~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 363 VLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred EEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999987 444555555443
No 85
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.9e-41 Score=427.25 Aligned_cols=330 Identities=22% Similarity=0.332 Sum_probs=255.5
Q ss_pred HHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHH
Q psy16310 782 ALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 860 (1493)
Q Consensus 782 ~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1493)
.|++ +||.+|+|+|.++|+. +..|+|+++++|||+|||++|++|++..
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~-il~g~dvlv~~PTG~GKTl~y~lpal~~------------------------------ 52 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISH-VLDGRDVLVVMPTGGGKSLCYQVPALLL------------------------------ 52 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCccHhHHHHHHHHHc------------------------------
Confidence 3443 7999999999999985 5578899999999999999999998731
Q ss_pred HhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH----hcCCCcEEEECcHH
Q psy16310 861 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCPHILVATPGR 936 (1493)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~IlV~TP~r 936 (1493)
+..++||+|+++|+.|+...++.+ ++.+..+.++.+....... .....+|+++||++
T Consensus 53 ---------------~g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~ 113 (591)
T TIGR01389 53 ---------------KGLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPER 113 (591)
T ss_pred ---------------CCcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhH
Confidence 124899999999999999999875 4788888888876654432 23567999999999
Q ss_pred HHHHHHhCcCccccccceeEEEecccchhccCC--ChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCc
Q psy16310 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014 (1493)
Q Consensus 937 l~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~--~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~ 1014 (1493)
|........ ....++++|||||||++.+|| |.+.+..+...... -+..++++||||++..+...+..
T Consensus 114 l~~~~~~~~---l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~---~~~~~vi~lTAT~~~~~~~~i~~----- 182 (591)
T TIGR01389 114 LEQDYFLNM---LQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER---FPQVPRIALTATADAETRQDIRE----- 182 (591)
T ss_pred hcChHHHHH---HhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh---CCCCCEEEEEeCCCHHHHHHHHH-----
Confidence 864322211 123478999999999999987 45555554433211 13455999999999776554322
Q ss_pred CcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHH
Q psy16310 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRL 1093 (1493)
Q Consensus 1015 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l 1093 (1493)
.+.+..+..+.. ... ..++ .+.......+...+..++... +.++||||+|+..|+.+
T Consensus 183 -----------------~l~~~~~~~~~~--~~~-r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~l 240 (591)
T TIGR01389 183 -----------------LLRLADANEFIT--SFD-RPNL--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEEL 240 (591)
T ss_pred -----------------HcCCCCCCeEec--CCC-CCCc--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 222222222110 000 0111 122233345566667777655 57899999999999999
Q ss_pred HHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1094 ~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
+..|...|+.+..|||+|+..+|..+++.|.+|+++|||||+++++|||+|+|++||||++|.+.+.|+||+|||||.|.
T Consensus 241 a~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~ 320 (591)
T TIGR01389 241 AERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGL 320 (591)
T ss_pred HHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCHHHHHHHHH
Q psy16310 1174 EGLTLVLIESDEIPLYIKMFN 1194 (1493)
Q Consensus 1174 ~G~~i~l~~~~e~~~~~~~~~ 1194 (1493)
.|.|++++++.+...++.+..
T Consensus 321 ~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 321 PAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred CceEEEecCHHHHHHHHHHHh
Confidence 999999999998887776654
No 86
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.7e-41 Score=424.92 Aligned_cols=373 Identities=19% Similarity=0.292 Sum_probs=259.2
Q ss_pred CCHHHHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 158 IPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 158 l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
+.......|++ .||..|+|+|.++|+ ++..|+|+++++|||||||++|++|++..
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~-~il~g~dvlv~apTGsGKTl~y~lpal~~----------------------- 64 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIID-AVLSGRDCLVVMPTGGGKSLCYQIPALVL----------------------- 64 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHH-HHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------------------
Confidence 33444444544 599999999999998 56688999999999999999999998731
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH----hcCCCCE
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCPHI 312 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~----l~~~~~I 312 (1493)
...+|||+||++|+.|+.+.+..+ ++.+..+.++......... .....+|
T Consensus 65 ----------------------~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~i 118 (607)
T PRK11057 65 ----------------------DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKL 118 (607)
T ss_pred ----------------------CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcE
Confidence 135899999999999999998775 5777778887766554332 2345789
Q ss_pred EEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 313 iV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+++||++|........+ ...++++|||||||++++|+ |.+.+..+-.....
T Consensus 119 l~~tPe~l~~~~~~~~l---~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~------------------------ 171 (607)
T PRK11057 119 LYIAPERLMMDNFLEHL---AHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR------------------------ 171 (607)
T ss_pred EEEChHHhcChHHHHHH---hhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh------------------------
Confidence 99999998632111111 12368999999999999876 55555443221100
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
.+..+++++|||++......+. ..+....+....
T Consensus 172 -------~p~~~~v~lTAT~~~~~~~di~----------------------~~l~l~~~~~~~----------------- 205 (607)
T PRK11057 172 -------FPTLPFMALTATADDTTRQDIV----------------------RLLGLNDPLIQI----------------- 205 (607)
T ss_pred -------CCCCcEEEEecCCChhHHHHHH----------------------HHhCCCCeEEEE-----------------
Confidence 1246899999999876543211 011100000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh-CCCcEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRTLV 549 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~II 549 (1493)
..... +.+ .+...........+..++.. .+.++||
T Consensus 206 -~~~~r----------------------------~nl---------------~~~v~~~~~~~~~l~~~l~~~~~~~~II 241 (607)
T PRK11057 206 -SSFDR----------------------------PNI---------------RYTLVEKFKPLDQLMRYVQEQRGKSGII 241 (607)
T ss_pred -CCCCC----------------------------Ccc---------------eeeeeeccchHHHHHHHHHhcCCCCEEE
Confidence 00000 000 00000011122233444433 3568999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHH
Q psy16310 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yi 629 (1493)
||+|+..|+.++..|...++.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+|+|++||+||+|.|..+|+
T Consensus 242 Fc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~ 321 (607)
T PRK11057 242 YCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYY 321 (607)
T ss_pred EECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCeEEEEecCCcchhhhhhhhhhccchHHHHHHHhhhcccccchhhhhhhhhhhhccC
Q psy16310 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQ 698 (1493)
Q Consensus 630 QR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~~~~~~e~~e~~~~~~~~~e~~~~~vss~k~k~kr~~ 698 (1493)
||+|||||.|.+|.|++|+++.|...+..+........ ...........+........|.++.+-+..
T Consensus 322 Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~Crr~~~l~yf 389 (607)
T PRK11057 322 QETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQ-QQDIERHKLNAMGAFAEAQTCRRLVLLNYF 389 (607)
T ss_pred HHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHhcccCHHHHHHHHh
Confidence 99999999999999999999999887776654332211 111111122233344445556665544443
No 87
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.5e-41 Score=435.55 Aligned_cols=348 Identities=22% Similarity=0.294 Sum_probs=258.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
.|++++|++.+++.+.+.||.+|+|+|.++++..+..|+|++++||||||||++|.+|+++++.
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------------- 65 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------------- 65 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh----------------
Confidence 4788999999999999999999999999999965778999999999999999999999998773
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
++.++|||+||++||.|+++.+..+.. .++++..++|+...... ....++
T Consensus 66 --------------------------~~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~ 115 (737)
T PRK02362 66 --------------------------RGGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDND 115 (737)
T ss_pred --------------------------cCCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCC
Confidence 234799999999999999999998754 48999999998765442 224579
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+||||+++..++.+... .+.++++||+||||.+.+.+++..++.++.++...
T Consensus 116 IiV~Tpek~~~llr~~~~---~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~------------------------ 168 (737)
T PRK02362 116 IIVATSEKVDSLLRNGAP---WLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRL------------------------ 168 (737)
T ss_pred EEEECHHHHHHHHhcChh---hhhhcCEEEEECccccCCCcchHHHHHHHHHHHhc------------------------
Confidence 999999999888875432 35689999999999998889999999998877432
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
....|++++|||+++.- . +..|+.... +..... +..+.. .+..
T Consensus 169 ------~~~~qii~lSATl~n~~-~-----------------------la~wl~~~~-----~~~~~r-pv~l~~-~v~~ 211 (737)
T PRK02362 169 ------NPDLQVVALSATIGNAD-E-----------------------LADWLDAEL-----VDSEWR-PIDLRE-GVFY 211 (737)
T ss_pred ------CCCCcEEEEcccCCCHH-H-----------------------HHHHhCCCc-----ccCCCC-CCCCee-eEec
Confidence 23479999999997521 1 112221100 000000 000000 0000
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHhhCCCcEEEE
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQHPGRTLVF 550 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~IIF 550 (1493)
. .. . .+ . . ....... ........+...+ ..++++|||
T Consensus 212 ~--~~---~-~~-------------------~--------------~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF 249 (737)
T PRK02362 212 G--GA---I-HF-------------------D--------------D--SQREVEVPSKDDTLNLVLDTL-EEGGQCLVF 249 (737)
T ss_pred C--Ce---e-cc-------------------c--------------c--ccccCCCccchHHHHHHHHHH-HcCCCeEEE
Confidence 0 00 0 00 0 0 0000000 0011222222222 356799999
Q ss_pred ecchhhHHHHHHHHHhc------------------------------------CCCccccccCCCHHHHHHHHHHHhcCC
Q psy16310 551 CNSISSVKRLTQLLTML------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQN 594 (1493)
Q Consensus 551 ~~s~~~a~~L~~~L~~~------------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~ 594 (1493)
|+|+..|+.++..|... ..+++.|||+|++.+|..+++.|++|.
T Consensus 250 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~ 329 (737)
T PRK02362 250 VSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRL 329 (737)
T ss_pred EeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCC
Confidence 99999999988877532 136788999999999999999999999
Q ss_pred CeEEEEechhhccCCCCCCcEEEE----ec-----CCCChHHHHHHHhccccCCCC--CeEEEEecCC
Q psy16310 595 NSILLATDVAARGLDIPGIEHVIH----YH-----VPRTSEIYIHRSGRTARANNE--GLTVVLIESD 651 (1493)
Q Consensus 595 ~~VLVaTdv~~rGlDip~v~~VI~----yd-----~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~ 651 (1493)
++|||||+++++|+|+|++++||+ || .|.++.+|+||+|||||.|.. |.|++++.+.
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 999999999999999999999997 77 689999999999999999875 9999998664
No 88
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=6.5e-41 Score=415.07 Aligned_cols=320 Identities=18% Similarity=0.218 Sum_probs=234.3
Q ss_pred CCCCCCcHHHHhhHHHhhccCC-cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 786 KGFKTPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
.||+ |||||.++||.++ .|+ ++++++|||||||.+|.++++...
T Consensus 12 ~G~~-PtpiQ~~~i~~il-~G~~~v~~~apTGSGKTaa~aafll~~~--------------------------------- 56 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFV-AGQPPESCSTPTGLGKTSIIAAWLLAVE--------------------------------- 56 (844)
T ss_pred hCCC-CCHHHHHHHHHHH-cCCCcceEecCCCCcccHHHHHhhcccc---------------------------------
Confidence 4998 9999999999665 555 688899999999998765555211
Q ss_pred cchhhhhccCCCeE-EEEEcccHHHHHHHHHHHHHhhCCC-----------------------CcEEEEEEcCCCHHHHH
Q psy16310 865 NTTEFVKKTRNKLY-ALILAPTRELAIQVQNHILDAGKYT-----------------------PVKVACVVGGMSTEKQL 920 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~-~lil~PTreLa~Q~~~~~~~~~~~~-----------------------~~~v~~~~gg~~~~~~~ 920 (1493)
.....++ .++++||||||.|+++.++++++.+ ++++.+++||.+...|+
T Consensus 57 -------~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~ 129 (844)
T TIGR02621 57 -------IGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW 129 (844)
T ss_pred -------ccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH
Confidence 0112234 4457799999999999999998755 48899999999999999
Q ss_pred HHhcCCCcEEEECcHHHHHHHHhCcC-------------ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCC
Q psy16310 921 RILNKCPHILVATPGRLWEFIQLGHF-------------HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987 (1493)
Q Consensus 921 ~~l~~~~~IlV~TP~rl~~~l~~~~~-------------~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~ 987 (1493)
..+..+++|||||+ |++.++.+ +...+.++.+||||||| ++++|...+..|+..+......
T Consensus 130 ~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~ 203 (844)
T TIGR02621 130 MLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDF 203 (844)
T ss_pred HhcCCCCcEEEECH----HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCccc
Confidence 99999999999995 44544432 11136789999999999 7899999999999875221112
Q ss_pred CCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhh
Q psy16310 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067 (1493)
Q Consensus 988 ~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 1067 (1493)
.++|+++||||++..+......... .+..+.+.........+.+. +.+....+..
T Consensus 204 rprQtLLFSAT~p~ei~~l~~~~~~------------------------~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~ 258 (844)
T TIGR02621 204 LPLRVVELTATSRTDGPDRTTLLSA------------------------EDYKHPVLKKRLAAKKIVKL-VPPSDEKFLS 258 (844)
T ss_pred ccceEEEEecCCCccHHHHHHHHcc------------------------CCceeecccccccccceEEE-EecChHHHHH
Confidence 2479999999999765543321110 11111111111112222332 2222333332
Q ss_pred HHH----HHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHH-----HHHHHHhc----CC-------
Q psy16310 1068 YLY----YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL-----KNLDRFRD----QN------- 1127 (1493)
Q Consensus 1068 ~l~----~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~-----~~~~~F~~----g~------- 1127 (1493)
.+. ..+...++++||||||+..|+.++..|...++ ..+||+|++.+|. .++++|++ |.
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g 336 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQG 336 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccccccc
Confidence 322 22334568899999999999999999998876 8899999999999 88999987 54
Q ss_pred CCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCC-CeEEEEecC
Q psy16310 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE-GLTLVLIES 1183 (1493)
Q Consensus 1128 ~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~-G~~i~l~~~ 1183 (1493)
..|||||+++++||||+. ++||++..| .++|+||+||+||+|+. |.++.++..
T Consensus 337 ~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 337 TVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred ceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 689999999999999986 899998877 68999999999999985 444666644
No 89
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-40 Score=429.91 Aligned_cols=338 Identities=20% Similarity=0.254 Sum_probs=256.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
.|+++++++.+++.|.+.||.+|+|+|.++|+..+..|+|++++||||||||++|.+|++++++.
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------------- 66 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------------- 66 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---------------
Confidence 57889999999999999999999999999998767789999999999999999999999987742
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
.+.++|||+||++||.|+++.+..+. ..++++..++|+......+ ...++
T Consensus 67 --------------------------~~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~ 116 (720)
T PRK00254 67 --------------------------EGGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYD 116 (720)
T ss_pred --------------------------cCCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCC
Confidence 23479999999999999999998864 4689999999987654332 24579
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+|+||+++..++..+. ..+.++++||+||+|.+.+.++...+..++..+. ...|++++|||+++. .....
T Consensus 117 IiV~Tpe~~~~ll~~~~---~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~-----~~~qiI~lSATl~n~-~~la~ 187 (720)
T PRK00254 117 IIIATAEKFDSLLRHGS---SWIKDVKLVVADEIHLIGSYDRGATLEMILTHML-----GRAQILGLSATVGNA-EELAE 187 (720)
T ss_pred EEEEcHHHHHHHHhCCc---hhhhcCCEEEEcCcCccCCccchHHHHHHHHhcC-----cCCcEEEEEccCCCH-HHHHH
Confidence 99999999988876543 2467899999999999999899999999988873 568999999999853 22111
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-------cchhhHHHHHHHhCCCcEE
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-------DEKDSYLYYFILQHPGRTL 1081 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~k~~~l~~~l~~~~~~~I 1081 (1493)
+. +... ..... .+... .. ....+....... ......+... ...++++|
T Consensus 188 wl-~~~~--~~~~~--------------rpv~l--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~vL 242 (720)
T PRK00254 188 WL-NAEL--VVSDW--------------RPVKL--RK-----GVFYQGFLFWEDGKIERFPNSWESLVYDA-VKKGKGAL 242 (720)
T ss_pred Hh-CCcc--ccCCC--------------CCCcc--ee-----eEecCCeeeccCcchhcchHHHHHHHHHH-HHhCCCEE
Confidence 11 1000 00000 00000 00 000000000000 0111122222 23578999
Q ss_pred EEecchhhHHHHHHHHHh---------------------------------cCCCccccccCCCHHHHHHHHHHHhcCCC
Q psy16310 1082 VFCNSISSVKRLTQLLTM---------------------------------LKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128 (1493)
Q Consensus 1082 VF~~s~~~~~~l~~~L~~---------------------------------~~~~~~~lhg~m~~~~R~~~~~~F~~g~~ 1128 (1493)
|||+|+..|+.++..|.. ...++..|||+|++.+|..+++.|++|.+
T Consensus 243 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i 322 (720)
T PRK00254 243 VFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLI 322 (720)
T ss_pred EEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 999999999888766632 12358899999999999999999999999
Q ss_pred CeEEeehhhhccccCCCccEEEE-------ecCCC-ChhHHHHHHhccCCCC--CCCeEEEEecCCC
Q psy16310 1129 SILLATDVAARGLDIPGIEHVIH-------YHVPR-TSEIYIHRSGRTARAN--NEGLTLVLIESDE 1185 (1493)
Q Consensus 1129 ~VLVaTdv~~~GiDip~v~~VI~-------~d~p~-s~~~yiqr~GR~gR~g--~~G~~i~l~~~~e 1185 (1493)
+|||||+++++|+|+|++++||. ++.|. +..+|+||+|||||.| ..|.+++++.+.+
T Consensus 323 ~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 323 KVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred eEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999999994 55544 5678999999999975 6799999998765
No 90
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.4e-40 Score=429.76 Aligned_cols=360 Identities=20% Similarity=0.269 Sum_probs=251.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHH
Q psy16310 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 237 (1493)
Q Consensus 158 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (1493)
+++.+.+.+.+ +|..|||+|.++|| .+..|+|++++||||||||++|++|+++++......
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~-~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~----------------- 78 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIP-LIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE----------------- 78 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHH-HHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc-----------------
Confidence 56777776554 89999999999999 566889999999999999999999999988642110
Q ss_pred HHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHH-------h----cCCC-CeEEEEEEcCCCHHHHHHH
Q psy16310 238 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD-------A----GKYT-PVKVACVVGGMSTEKQLRI 305 (1493)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~-------l----~~~~-~i~v~~~~G~~~~~~~~~~ 305 (1493)
....++.++|||+|||+||.|+++.+.. + +... ++++...+|+++.......
T Consensus 79 ----------------~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~ 142 (876)
T PRK13767 79 ----------------GELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKM 142 (876)
T ss_pred ----------------cCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHH
Confidence 0113457899999999999999876542 2 2233 7899999999998888778
Q ss_pred hcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 306 l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
+.++++|+|+||++|..++...... ..|.++++|||||||.+++..++.++...+.++....
T Consensus 143 l~~~p~IlVtTPE~L~~ll~~~~~~-~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~----------------- 204 (876)
T PRK13767 143 LKKPPHILITTPESLAILLNSPKFR-EKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA----------------- 204 (876)
T ss_pred HhCCCCEEEecHHHHHHHhcChhHH-HHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc-----------------
Confidence 8888999999999998777543321 2467899999999999998888888888887764321
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccc
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1493)
....|++++|||+++. .... .++...... ....
T Consensus 205 ------------~~~~q~IglSATl~~~-~~va-----------------------~~L~~~~~~--------~~~r--- 237 (876)
T PRK13767 205 ------------GGEFVRIGLSATIEPL-EEVA-----------------------KFLVGYEDD--------GEPR--- 237 (876)
T ss_pred ------------CCCCeEEEEecccCCH-HHHH-----------------------HHhcCcccc--------CCCC---
Confidence 2457999999999752 1111 111000000 0000
Q ss_pred hhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCC
Q psy16310 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 545 (1493)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 545 (1493)
.. ..........+ ......+.. .+...............+...+. ..+
T Consensus 238 ~~-~iv~~~~~k~~--~i~v~~p~~----------------------------~l~~~~~~~~~~~l~~~L~~~i~-~~~ 285 (876)
T PRK13767 238 DC-EIVDARFVKPF--DIKVISPVD----------------------------DLIHTPAEEISEALYETLHELIK-EHR 285 (876)
T ss_pred ce-EEEccCCCccc--eEEEeccCc----------------------------cccccccchhHHHHHHHHHHHHh-cCC
Confidence 00 00000000000 000000000 00000000000111222333332 357
Q ss_pred cEEEEecchhhHHHHHHHHHhc------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEe
Q psy16310 546 RTLVFCNSISSVKRLTQLLTML------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619 (1493)
Q Consensus 546 ~~IIF~~s~~~a~~L~~~L~~~------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~y 619 (1493)
++||||+|+..|+.++..|... +..+..|||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|
T Consensus 286 ~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~ 365 (876)
T PRK13767 286 TTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLL 365 (876)
T ss_pred CEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEe
Confidence 8999999999999999999763 4678999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHhccccCC-CCCeEEEEec
Q psy16310 620 HVPRTSEIYIHRSGRTARAN-NEGLTVVLIE 649 (1493)
Q Consensus 620 d~P~s~~~yiQR~GRagR~g-~~G~~i~l~~ 649 (1493)
+.|.++..|+||+|||||.+ ..+.++++..
T Consensus 366 ~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 366 GSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999864 3345555543
No 91
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.2e-40 Score=418.93 Aligned_cols=328 Identities=22% Similarity=0.331 Sum_probs=247.5
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
+||..|+|+|.++|+ ++..|+|+++++|||+|||++|++|++..
T Consensus 9 fg~~~fr~~Q~~~i~-~il~g~dvlv~~PTG~GKTl~y~lpal~~----------------------------------- 52 (591)
T TIGR01389 9 FGYDDFRPGQEEIIS-HVLDGRDVLVVMPTGGGKSLCYQVPALLL----------------------------------- 52 (591)
T ss_pred cCCCCCCHHHHHHHH-HHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------------------------------
Confidence 799999999999998 56678999999999999999999998721
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH----hcCCCCEEEeCcHHHHHHH
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCPHILVATPGRLWEFI 324 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~----l~~~~~IiV~TP~~L~~~l 324 (1493)
+..++||+|+++|+.|+...+..+ ++.+..+.++.+....... ..+..+|+++||++|....
T Consensus 53 ----------~g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~ 118 (591)
T TIGR01389 53 ----------KGLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDY 118 (591)
T ss_pred ----------CCcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChH
Confidence 134899999999999999999875 5778888888776654332 2356799999999986432
Q ss_pred HcCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCce
Q psy16310 325 QLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402 (1493)
Q Consensus 325 ~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 402 (1493)
..... ...++++|||||||++.+|| |.+.+..+....... +..+
T Consensus 119 ~~~~l---~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~-------------------------------~~~~ 164 (591)
T TIGR01389 119 FLNML---QRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERF-------------------------------PQVP 164 (591)
T ss_pred HHHHH---hcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhC-------------------------------CCCC
Confidence 22122 23478999999999998876 556555554332111 1235
Q ss_pred EEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHH
Q psy16310 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482 (1493)
Q Consensus 403 ~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1493)
++++|||++..+...+. .++....+.... ...
T Consensus 165 vi~lTAT~~~~~~~~i~----------------------~~l~~~~~~~~~------------------~~~-------- 196 (591)
T TIGR01389 165 RIALTATADAETRQDIR----------------------ELLRLADANEFI------------------TSF-------- 196 (591)
T ss_pred EEEEEeCCCHHHHHHHH----------------------HHcCCCCCCeEe------------------cCC--------
Confidence 99999999876543221 111110000000 000
Q ss_pred HHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHH
Q psy16310 483 FILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLT 561 (1493)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~ 561 (1493)
..+. ..+.......+...+..++... +.++||||+|+..++.++
T Consensus 197 --------------------~r~n---------------l~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la 241 (591)
T TIGR01389 197 --------------------DRPN---------------LRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELA 241 (591)
T ss_pred --------------------CCCC---------------cEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHH
Confidence 0000 0000011122344455555554 468999999999999999
Q ss_pred HHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCC
Q psy16310 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641 (1493)
Q Consensus 562 ~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~ 641 (1493)
..|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.|+..|+||+|||||.|.+
T Consensus 242 ~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~ 321 (591)
T TIGR01389 242 ERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLP 321 (591)
T ss_pred HHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCcchhhhhhhhhh
Q psy16310 642 GLTVVLIESDEIPLKTKFNLQE 663 (1493)
Q Consensus 642 G~~i~l~~~~e~~~~~~l~~~~ 663 (1493)
|.|++++++.|......+....
T Consensus 322 ~~~il~~~~~d~~~~~~~i~~~ 343 (591)
T TIGR01389 322 AEAILLYSPADIALLKRRIEQS 343 (591)
T ss_pred ceEEEecCHHHHHHHHHHHhcc
Confidence 9999999999988777765443
No 92
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.1e-38 Score=406.51 Aligned_cols=315 Identities=20% Similarity=0.233 Sum_probs=230.1
Q ss_pred HHHHHH-HHCCCCCCcHHHHhhHHHhhccC-----CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHH
Q psy16310 778 TIIRAL-YQKGFKTPTKIQSMVMPSALLAR-----KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851 (1493)
Q Consensus 778 ~l~~~l-~~~g~~~pt~iQ~~~i~~~l~~~-----~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 851 (1493)
.+.+.+ ..++| +||++|.++|+.++.+. .+++++||||||||++|++|++..+.
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------------------- 308 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------------------- 308 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-------------------
Confidence 344444 45677 69999999999765432 48999999999999999999997662
Q ss_pred HHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHH---HHHhcC-CC
Q psy16310 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ---LRILNK-CP 927 (1493)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~---~~~l~~-~~ 927 (1493)
.+.+++||+||++||.|+++.+++++..+++++.+++|+.+.... ...+.. .+
T Consensus 309 -----------------------~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~ 365 (681)
T PRK10917 309 -----------------------AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEA 365 (681)
T ss_pred -----------------------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCC
Confidence 345799999999999999999999998889999999999986443 333433 58
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|+||||+++.+. ..+.+++++|+||+|++.. .....+... ....++++||||+.+......
T Consensus 366 ~IvVgT~~ll~~~--------v~~~~l~lvVIDE~Hrfg~-----~qr~~l~~~-----~~~~~iL~~SATp~prtl~~~ 427 (681)
T PRK10917 366 DIVIGTHALIQDD--------VEFHNLGLVIIDEQHRFGV-----EQRLALREK-----GENPHVLVMTATPIPRTLAMT 427 (681)
T ss_pred CEEEchHHHhccc--------chhcccceEEEechhhhhH-----HHHHHHHhc-----CCCCCEEEEeCCCCHHHHHHH
Confidence 9999999987432 2366899999999998632 222222222 245789999999864322211
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH---hCCCcEEEEe
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFC 1084 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IVF~ 1084 (1493)
. .+ ......+.... .....+.... .... ....++..+. ..+.+++|||
T Consensus 428 ~--~g----------------------~~~~s~i~~~p--~~r~~i~~~~--~~~~-~~~~~~~~i~~~~~~g~q~~v~~ 478 (681)
T PRK10917 428 A--YG----------------------DLDVSVIDELP--PGRKPITTVV--IPDS-RRDEVYERIREEIAKGRQAYVVC 478 (681)
T ss_pred H--cC----------------------CCceEEEecCC--CCCCCcEEEE--eCcc-cHHHHHHHHHHHHHcCCcEEEEE
Confidence 0 00 00011111000 0011122211 1222 2222333332 4567999999
Q ss_pred cch--------hhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecC
Q psy16310 1085 NSI--------SSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154 (1493)
Q Consensus 1085 ~s~--------~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~ 1154 (1493)
+++ ..+..+++.|... ++.+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||++++
T Consensus 479 ~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~ 558 (681)
T PRK10917 479 PLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENA 558 (681)
T ss_pred cccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCC
Confidence 964 3566777787765 468999999999999999999999999999999999999999999999999999
Q ss_pred CC-ChhHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1155 PR-TSEIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1155 p~-s~~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
|. +...|.||+||+||.|..|.|++++.
T Consensus 559 ~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 559 ERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 98 46788889999999999999999995
No 93
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.2e-39 Score=416.19 Aligned_cols=345 Identities=21% Similarity=0.274 Sum_probs=253.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
+|.++++++.+.+.+.+.||..|+|+|.++++..+..|+|++++||||||||++|.+|+++++..
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------------- 66 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------------- 66 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---------------
Confidence 47789999999999999999999999999998667789999999999999999999999988742
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
.+.++|||+||++||.|+++.+..+. ..++++..++|+......+ ...++
T Consensus 67 --------------------------~~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~ 116 (720)
T PRK00254 67 --------------------------EGGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYD 116 (720)
T ss_pred --------------------------cCCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCC
Confidence 23579999999999999999998764 4689999999998754432 34579
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||+++..++.+... ++.++++|||||+|.+.+.+++..++.++.++.
T Consensus 117 IiV~Tpe~~~~ll~~~~~---~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~-------------------------- 167 (720)
T PRK00254 117 IIIATAEKFDSLLRHGSS---WIKDVKLVVADEIHLIGSYDRGATLEMILTHML-------------------------- 167 (720)
T ss_pred EEEEcHHHHHHHHhCCch---hhhcCCEEEEcCcCccCCccchHHHHHHHHhcC--------------------------
Confidence 999999999888765432 366899999999999988889999998887652
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
...|++++|||+++. ..+ ..|+.... ... ... +..+.. .+..
T Consensus 168 -------~~~qiI~lSATl~n~-~~l-----------------------a~wl~~~~--~~~---~~r-pv~l~~-~~~~ 209 (720)
T PRK00254 168 -------GRAQILGLSATVGNA-EEL-----------------------AEWLNAEL--VVS---DWR-PVKLRK-GVFY 209 (720)
T ss_pred -------cCCcEEEEEccCCCH-HHH-----------------------HHHhCCcc--ccC---CCC-CCccee-eEec
Confidence 236999999999752 211 12221100 000 000 000000 0000
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEe
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 551 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~ 551 (1493)
. .+.++ .. .. .. .........+...+. .++++||||
T Consensus 210 ~-----~~~~~-----~~---------------~~-------------~~-----~~~~~~~~~~~~~i~-~~~~vLVF~ 245 (720)
T PRK00254 210 Q-----GFLFW-----ED---------------GK-------------IE-----RFPNSWESLVYDAVK-KGKGALVFV 245 (720)
T ss_pred C-----Ceeec-----cC---------------cc-------------hh-----cchHHHHHHHHHHHH-hCCCEEEEE
Confidence 0 00000 00 00 00 000011122333332 467999999
Q ss_pred cchhhHHHHHHHHHh---------------------------------cCCCccccccCCCHHHHHHHHHHHhcCCCeEE
Q psy16310 552 NSISSVKRLTQLLTM---------------------------------LKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598 (1493)
Q Consensus 552 ~s~~~a~~L~~~L~~---------------------------------~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VL 598 (1493)
+|+..|+.++..|.. ...+++.|||+|++.+|..+++.|++|.++||
T Consensus 246 ~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VL 325 (720)
T PRK00254 246 NTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVI 325 (720)
T ss_pred cChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEE
Confidence 999999887766632 13468899999999999999999999999999
Q ss_pred EEechhhccCCCCCCcEEEE-------ecCCC-ChHHHHHHHhccccCC--CCCeEEEEecCCc
Q psy16310 599 LATDVAARGLDIPGIEHVIH-------YHVPR-TSEIYIHRSGRTARAN--NEGLTVVLIESDE 652 (1493)
Q Consensus 599 VaTdv~~rGlDip~v~~VI~-------yd~P~-s~~~yiQR~GRagR~g--~~G~~i~l~~~~e 652 (1493)
|||+++++|+|+|++++||+ |+.|. .+.+|+||+|||||.| ..|.|++++.+.+
T Consensus 326 vaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 326 TATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred EeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999994 55554 5679999999999965 5699999987654
No 94
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=391.97 Aligned_cols=340 Identities=23% Similarity=0.319 Sum_probs=272.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHH
Q psy16310 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854 (1493)
Q Consensus 775 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 854 (1493)
|++.+.+.++.. |..|||.|.+|||. +.+|+|++++||||||||+|+.+|++..++....
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~-i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~------------------ 67 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPE-IHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK------------------ 67 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHH-HhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC------------------
Confidence 789999999888 99999999999995 5599999999999999999999999999976420
Q ss_pred HHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECc
Q psy16310 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 934 (1493)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP 934 (1493)
.....+..||||+|.|+|...+...+...+..+|+.+..-+|+++..+..+.+.+.|||+|+||
T Consensus 68 ----------------~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTP 131 (814)
T COG1201 68 ----------------GKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTP 131 (814)
T ss_pred ----------------CCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeCh
Confidence 1234578999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCc
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~ 1014 (1493)
+.|.-++.... ....|.+++++|+||.|.+.+...+.++.--+++|..... ..|.+++|||..+...- .
T Consensus 132 EsL~lll~~~~-~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~--~~qRIGLSATV~~~~~v-a------- 200 (814)
T COG1201 132 ESLAILLNSPK-FRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG--DFQRIGLSATVGPPEEV-A------- 200 (814)
T ss_pred hHHHHHhcCHH-HHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc--ccEEEeehhccCCHHHH-H-------
Confidence 99877765432 2345889999999999999988888888888888865433 78999999999743221 1
Q ss_pred CcccccCCCchhHHHHhHhccCC--CcEEeccccccccccceeeEEEec----------ccchhhHHHHHHHhCCCcEEE
Q psy16310 1015 KSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCK----------HDEKDSYLYYFILQHPGRTLV 1082 (1493)
Q Consensus 1015 ~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~~~~~~IV 1082 (1493)
.++.-.+ -.++...... .... .+..+ .......+..++.++ ..+||
T Consensus 201 ----------------rfL~g~~~~~~Iv~~~~~k----~~~i-~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~-~ttLI 258 (814)
T COG1201 201 ----------------KFLVGFGDPCEIVDVSAAK----KLEI-KVISPVEDLIYDEELWAALYERIAELVKKH-RTTLI 258 (814)
T ss_pred ----------------HHhcCCCCceEEEEcccCC----cceE-EEEecCCccccccchhHHHHHHHHHHHhhc-CcEEE
Confidence 1111111 1111111110 0000 01111 111223333334444 58999
Q ss_pred EecchhhHHHHHHHHHhcC-CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHH
Q psy16310 1083 FCNSISSVKRLTQLLTMLK-CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~-~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~y 1161 (1493)
|+||+..++.++..|...+ ..+..|||.++..+|..+.++|++|+.+++|||+.++-|||+.+|+.||||+.|.+...+
T Consensus 259 F~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~ 338 (814)
T COG1201 259 FTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRF 338 (814)
T ss_pred EEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHH
Confidence 9999999999999999987 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCC-CCCCeEEEEecC
Q psy16310 1162 IHRSGRTARA-NNEGLTLVLIES 1183 (1493)
Q Consensus 1162 iqr~GR~gR~-g~~G~~i~l~~~ 1183 (1493)
+||+||+|+. |....++++...
T Consensus 339 lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 339 LQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred hHhccccccccCCcccEEEEecC
Confidence 9999999976 667888888766
No 95
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-38 Score=409.98 Aligned_cols=345 Identities=17% Similarity=0.221 Sum_probs=253.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
.|++++|++.+++.+...||+ ++|+|.++++. +..++|++++||||||||++|.+++++.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~-l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------------- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQ-LRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------------- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHH-HhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------------
Confidence 478899999999999999997 99999999985 6788999999999999999999999887632
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
+.++||++||++||.|+++.+.++. ..++++...+|+....... .+.++
T Consensus 65 ---------------------------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~d 113 (674)
T PRK01172 65 ---------------------------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPDF---IKRYD 113 (674)
T ss_pred ---------------------------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChhh---hccCC
Confidence 2369999999999999999998864 4678898899887543321 24579
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+|+||+++..++.++. ..+.++++||+||||++.+.+++..+..++..+... ..+.|++++|||+++.. ....
T Consensus 114 Iiv~Tpek~~~l~~~~~---~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~--~~~~riI~lSATl~n~~-~la~ 187 (674)
T PRK01172 114 VVILTSEKADSLIHHDP---YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV--NPDARILALSATVSNAN-ELAQ 187 (674)
T ss_pred EEEECHHHHHHHHhCCh---hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc--CcCCcEEEEeCccCCHH-HHHH
Confidence 99999999888876543 346789999999999999888888888888766432 35689999999997532 1111
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCC-CcEEeccccccccccceeeEEEecccc----hhhHHHHHHHhCCCcEEEE
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDE----KDSYLYYFILQHPGRTLVF 1083 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~~l~~~~~~~IVF 1083 (1493)
+. +... +.. .... +....+... .. ..+.... ....++......++++|||
T Consensus 188 wl-~~~~---~~~------------~~r~vpl~~~i~~~-------~~--~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF 242 (674)
T PRK01172 188 WL-NASL---IKS------------NFRPVPLKLGILYR-------KR--LILDGYERSQVDINSLIKETVNDGGQVLVF 242 (674)
T ss_pred Hh-CCCc---cCC------------CCCCCCeEEEEEec-------Ce--eeecccccccccHHHHHHHHHhCCCcEEEE
Confidence 11 0000 000 0000 000000000 00 0000000 1111222223457899999
Q ss_pred ecchhhHHHHHHHHHhc-------------------------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhh
Q psy16310 1084 CNSISSVKRLTQLLTML-------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138 (1493)
Q Consensus 1084 ~~s~~~~~~l~~~L~~~-------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~ 1138 (1493)
|++++.|+.++..|... ..++..|||+|++.+|..+++.|++|.++|||||++++
T Consensus 243 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la 322 (674)
T PRK01172 243 VSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLA 322 (674)
T ss_pred eccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhh
Confidence 99999999999888643 12467899999999999999999999999999999999
Q ss_pred ccccCCCccEEEEecC---------CCChhHHHHHHhccCCCCC--CCeEEEEecCCC-HHHHHHHH
Q psy16310 1139 RGLDIPGIEHVIHYHV---------PRTSEIYIHRSGRTARANN--EGLTLVLIESDE-IPLYIKMF 1193 (1493)
Q Consensus 1139 ~GiDip~v~~VI~~d~---------p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e-~~~~~~~~ 1193 (1493)
+|+|+|+..+|| ++. |.+..+|.||+|||||.|. .|.+++++...+ ...+.+++
T Consensus 323 ~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 323 AGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred ccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHH
Confidence 999999965554 443 4578899999999999984 678888876654 44555544
No 96
>KOG0329|consensus
Probab=100.00 E-value=7.8e-40 Score=333.23 Aligned_cols=312 Identities=29% Similarity=0.530 Sum_probs=238.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
+.|.++-|.|++++++...||.+|+++|.+|||.+++ |.|++++|..|-|||.+|+|..++.+.
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqail-gmdvlcqaksgmgktavfvl~tlqqie--------------- 105 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQIE--------------- 105 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhh-cchhheecccCCCceeeeehhhhhhcC---------------
Confidence 4588889999999999999999999999999999986 589999999999999999999998772
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
+......+|++|.|||||.|+.+...++++++ ++++..++||...+.....+.+.
T Consensus 106 ------------------------pv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~ 161 (387)
T KOG0329|consen 106 ------------------------PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNC 161 (387)
T ss_pred ------------------------CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCC
Confidence 11234679999999999999999999998875 49999999999999999999999
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhc-CChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~-~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
|+|+|+|||+++.+..+..+++ .++.+.|+||||.|+++ ..+..+..|++.
T Consensus 162 PhivVgTPGrilALvr~k~l~l---k~vkhFvlDEcdkmle~lDMrRDvQEifr~------------------------- 213 (387)
T KOG0329|consen 162 PHIVVGTPGRILALVRNRSLNL---KNVKHFVLDECDKMLEQLDMRRDVQEIFRM------------------------- 213 (387)
T ss_pred CeEEEcCcHHHHHHHHhccCch---hhcceeehhhHHHHHHHHHHHHHHHHHhhc-------------------------
Confidence 9999999999999998877654 48999999999999875 334445555532
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
++...|+++||||++.+++..+.-..-. |. .
T Consensus 214 --------tp~~KQvmmfsatlskeiRpvC~kFmQd------------------------Pm-----------------E 244 (387)
T KOG0329|consen 214 --------TPHEKQVMMFSATLSKEIRPVCHKFMQD------------------------PM-----------------E 244 (387)
T ss_pred --------CcccceeeeeeeecchhhHHHHHhhhcC------------------------ch-----------------h
Confidence 2566899999999998876554311100 00 0
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcE
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 547 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~ 547 (1493)
+.+....+. ....+.+.++......|...+..+|... -.++
T Consensus 245 i~vDdE~KL--------------------------------------tLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQV 286 (387)
T KOG0329|consen 245 IFVDDEAKL--------------------------------------TLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQV 286 (387)
T ss_pred hhccchhhh--------------------------------------hhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcce
Confidence 000000000 0001111222222233344444444333 2589
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
+||+.|... ++ | ..+ ||||++++||+||..|+.|||||+|.+..+
T Consensus 287 vIFvKsv~R---l~----------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~Dt 331 (387)
T KOG0329|consen 287 VIFVKSVQR---LS----------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDT 331 (387)
T ss_pred eEeeehhhh---hh----------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchH
Confidence 999998653 00 3 223 899999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCc
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
|+||+|||||.|..|.+++|++..+
T Consensus 332 YlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 332 YLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred HHHHhhhhhccccccceeehhcchh
Confidence 9999999999999999999997754
No 97
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.7e-38 Score=399.44 Aligned_cols=317 Identities=24% Similarity=0.297 Sum_probs=230.5
Q ss_pred HHHHHHHCCCCCCcHHHHhhHHHhhccC-----CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHH
Q psy16310 779 IIRALYQKGFKTPTKIQSMVMPSALLAR-----KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 853 (1493)
Q Consensus 779 l~~~l~~~g~~~pt~iQ~~~i~~~l~~~-----~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 853 (1493)
+.+.+..++| +||++|.+||+.++.+. .+.+++||||||||++|++|++..+.
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------------------- 282 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------------------- 282 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---------------------
Confidence 4456677899 79999999999766431 36899999999999999999997662
Q ss_pred HHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHH---HHHhc-CCCcE
Q psy16310 854 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ---LRILN-KCPHI 929 (1493)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~---~~~l~-~~~~I 929 (1493)
.+.+++|++||++||.|+++.+++++..+++++.+++|+...... ...+. ..++|
T Consensus 283 ---------------------~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~I 341 (630)
T TIGR00643 283 ---------------------AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHL 341 (630)
T ss_pred ---------------------cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCE
Confidence 245799999999999999999999998889999999999886653 33333 45799
Q ss_pred EEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhh
Q psy16310 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009 (1493)
Q Consensus 930 lV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~ 1009 (1493)
+||||+++.+. ..+.+++++||||+|++... +...+...... ....++++||||+.+.......
T Consensus 342 iVgT~~ll~~~--------~~~~~l~lvVIDEaH~fg~~----qr~~l~~~~~~---~~~~~~l~~SATp~prtl~l~~- 405 (630)
T TIGR00643 342 VVGTHALIQEK--------VEFKRLALVIIDEQHRFGVE----QRKKLREKGQG---GFTPHVLVMSATPIPRTLALTV- 405 (630)
T ss_pred EEecHHHHhcc--------ccccccceEEEechhhccHH----HHHHHHHhccc---CCCCCEEEEeCCCCcHHHHHHh-
Confidence 99999987532 23668999999999985321 22222222210 1257899999997543221110
Q ss_pred hccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH---hCCCcEEEEecc
Q psy16310 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFCNS 1086 (1493)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IVF~~s 1086 (1493)
.+. + ....+.... .....+... ......+ ..++..+. ..+.+++|||++
T Consensus 406 -~~~---------------------l-~~~~i~~~p--~~r~~i~~~--~~~~~~~-~~~~~~i~~~l~~g~q~~v~~~~ 457 (630)
T TIGR00643 406 -YGD---------------------L-DTSIIDELP--PGRKPITTV--LIKHDEK-DIVYEFIEEEIAKGRQAYVVYPL 457 (630)
T ss_pred -cCC---------------------c-ceeeeccCC--CCCCceEEE--EeCcchH-HHHHHHHHHHHHhCCcEEEEEcc
Confidence 000 0 000000000 000111111 1122222 33333333 346789999997
Q ss_pred h--------hhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC
Q psy16310 1087 I--------SSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156 (1493)
Q Consensus 1087 ~--------~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~ 1156 (1493)
+ ..+..++..|... ++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||++++|.
T Consensus 458 i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r 537 (630)
T TIGR00643 458 IEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAER 537 (630)
T ss_pred ccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCc
Confidence 6 4566777777653 67899999999999999999999999999999999999999999999999999997
Q ss_pred -ChhHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1157 -TSEIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1157 -s~~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
+...|.||+||+||.|+.|.|++++.
T Consensus 538 ~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 538 FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 57788889999999999999999983
No 98
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.5e-38 Score=390.85 Aligned_cols=320 Identities=19% Similarity=0.228 Sum_probs=227.5
Q ss_pred CCCCCChHHHHhhhhhhhccCC-cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 169 KGFKTPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~-dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
.||+ |||||.++||.++ .|+ ++++++|||||||.+|+++++...
T Consensus 12 ~G~~-PtpiQ~~~i~~il-~G~~~v~~~apTGSGKTaa~aafll~~~--------------------------------- 56 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFV-AGQPPESCSTPTGLGKTSIIAAWLLAVE--------------------------------- 56 (844)
T ss_pred hCCC-CCHHHHHHHHHHH-cCCCcceEecCCCCcccHHHHHhhcccc---------------------------------
Confidence 4998 9999999999655 666 688889999999997765555210
Q ss_pred cchhhhhcccCceEEE-EEcccHHHHHHHHHHHHHhcCCC-----------------------CeEEEEEEcCCCHHHHH
Q psy16310 248 NTTEFVKKTRNKLYAL-ILAPTRELAIQVQNHILDAGKYT-----------------------PVKVACVVGGMSTEKQL 303 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aL-iL~PTreLa~Qi~~~~~~l~~~~-----------------------~i~v~~~~G~~~~~~~~ 303 (1493)
.....++.| +++|||+||.|+++.+..+++.+ ++++..++||.+...++
T Consensus 57 -------~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~ 129 (844)
T TIGR02621 57 -------IGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW 129 (844)
T ss_pred -------ccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH
Confidence 011223445 57799999999999999988754 48899999999999999
Q ss_pred HHhcCCCCEEEeCcHHHHHHHHcCCc-------------cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCC
Q psy16310 304 RILNKCPHILVATPGRLWEFIQLGHF-------------HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370 (1493)
Q Consensus 304 ~~l~~~~~IiV~TP~~L~~~l~~~~~-------------~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~ 370 (1493)
..+..+++|||+|+ +++.++.+ +...|.++++||||||| ++++|.+.+..|+..+....
T Consensus 130 ~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~-- 201 (844)
T TIGR02621 130 MLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPP-- 201 (844)
T ss_pred HhcCCCCcEEEECH----HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCc--
Confidence 99999999999995 55544433 11136689999999999 67999999999998642110
Q ss_pred CccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCc
Q psy16310 371 QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450 (1493)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (1493)
...++|+++||||++..+..+...... .+.
T Consensus 202 --------------------------~~rprQtLLFSAT~p~ei~~l~~~~~~------------------------~p~ 231 (844)
T TIGR02621 202 --------------------------DFLPLRVVELTATSRTDGPDRTTLLSA------------------------EDY 231 (844)
T ss_pred --------------------------ccccceEEEEecCCCccHHHHHHHHcc------------------------CCc
Confidence 012479999999998765443211000 000
Q ss_pred ccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccC
Q psy16310 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 530 (1493)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1493)
........ .. ... ... .+.....
T Consensus 232 ~i~V~~~~-l~------------------------------------------a~k-------------i~q-~v~v~~e 254 (844)
T TIGR02621 232 KHPVLKKR-LA------------------------------------------AKK-------------IVK-LVPPSDE 254 (844)
T ss_pred eeeccccc-cc------------------------------------------ccc-------------eEE-EEecChH
Confidence 00000000 00 000 000 0000001
Q ss_pred chh----hHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHH-----HHHHHHhc----CC---
Q psy16310 531 EKD----SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL-----KNLDRFRD----QN--- 594 (1493)
Q Consensus 531 ~k~----~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~-----~vl~~Fr~----g~--- 594 (1493)
.+. ..+...+...++++||||||+..|+.+++.|...++ ..+||+|++.+|. .+++.|++ |+
T Consensus 255 ~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~ 332 (844)
T TIGR02621 255 KFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRAR 332 (844)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccc
Confidence 111 112223334567899999999999999999998776 8899999999999 88999987 54
Q ss_pred ----CeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCC-CeEEEEecC
Q psy16310 595 ----NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE-GLTVVLIES 650 (1493)
Q Consensus 595 ----~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~-G~~i~l~~~ 650 (1493)
..|||||+++++||||+. ++||++..| ..+|+||+||+||+|+. |..+.++..
T Consensus 333 ~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 333 PQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred ccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 689999999999999986 899998877 68999999999999986 444666644
No 99
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.6e-38 Score=352.51 Aligned_cols=407 Identities=21% Similarity=0.286 Sum_probs=256.1
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
.-.|+.||......++. +|++++.|||-|||+++++.+.+++..
T Consensus 13 ~ie~R~YQ~~i~a~al~--~NtLvvlPTGLGKT~IA~~V~~~~l~~---------------------------------- 56 (542)
T COG1111 13 TIEPRLYQLNIAAKALF--KNTLVVLPTGLGKTFIAAMVIANRLRW---------------------------------- 56 (542)
T ss_pred cccHHHHHHHHHHHHhh--cCeEEEecCCccHHHHHHHHHHHHHHh----------------------------------
Confidence 34689999999887774 499999999999999999998877732
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcc
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~ 330 (1493)
..+ ++|||+||+.|+.|+++.|.+......-.++.++|..........+..+ +|+|+||+.+.+-|..+.++
T Consensus 57 ------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~-kVfvaTPQvveNDl~~Grid 128 (542)
T COG1111 57 ------FGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKK-KVFVATPQVVENDLKAGRID 128 (542)
T ss_pred ------cCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhC-CEEEeccHHHHhHHhcCccC
Confidence 334 8999999999999999999999877777889999998888776666554 99999999999999988887
Q ss_pred ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeecc
Q psy16310 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410 (1493)
Q Consensus 331 ~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl 410 (1493)
+. ++.+|||||||+..+..-+-.+..-+-+. ...+.++++|||+
T Consensus 129 ~~---dv~~lifDEAHRAvGnyAYv~Va~~y~~~---------------------------------~k~~~ilgLTASP 172 (542)
T COG1111 129 LD---DVSLLIFDEAHRAVGNYAYVFVAKEYLRS---------------------------------AKNPLILGLTASP 172 (542)
T ss_pred hH---HceEEEechhhhccCcchHHHHHHHHHHh---------------------------------ccCceEEEEecCC
Confidence 66 78999999999997665554444433222 3345678888887
Q ss_pred chhhhhhhhhhc--cccccccccCCCchh--------------------hhHHhhhhccCCcccchhhhhccccccc---
Q psy16310 411 THSLKNSLNLKK--GQSKSKKVSKGDPSI--------------------KRLQDLLNIKSPKIVDLTEKIGITKTLT--- 465 (1493)
Q Consensus 411 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 465 (1493)
..+......+.. +..........++.+ ..+.+.+...-..........++.....
T Consensus 173 Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~ 252 (542)
T COG1111 173 GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVS 252 (542)
T ss_pred CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCccc
Confidence 665443322211 111111111112111 1111111000000000000000000000
Q ss_pred ---------hhhhhhccCCcchh--------------hHHHHhcCCCcchhhHHHhhhhccCCc----cccccccccccc
Q psy16310 466 ---------ESKILCKHDEKDSY--------------LYYFILQHPGRTLCEEIQDLLNIKSPK----IVDLTEKIGITK 518 (1493)
Q Consensus 466 ---------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 518 (1493)
.............+ ...++....-..+..-+..+....... ...+........
T Consensus 253 ~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~ 332 (542)
T COG1111 253 KKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKR 332 (542)
T ss_pred HhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHH
Confidence 00000000000000 000000000000000000000000000 000000000000
Q ss_pred ccc---ccccccccCchhhHHHHHHhhC-----CCcEEEEecchhhHHHHHHHHHhcCCCcc-cc--------ccCCCHH
Q psy16310 519 TLT---ESKILCKHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTMLKCSPL-PL--------HASMNQR 581 (1493)
Q Consensus 519 ~~~---~~~~~~~~~~k~~~l~~~l~~~-----~~~~IIF~~s~~~a~~L~~~L~~~~~~~~-~l--------hg~~~~~ 581 (1493)
.+. ........+.|...+..++.+. ..++|||++.|.+|+.+..+|...++.+. .+ ..||+|.
T Consensus 333 al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQk 412 (542)
T COG1111 333 ALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQK 412 (542)
T ss_pred HHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHH
Confidence 000 0112223456777776666443 46999999999999999999999887774 33 3479999
Q ss_pred HHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhh
Q psy16310 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK 658 (1493)
Q Consensus 582 ~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~ 658 (1493)
+|..+++.|+.|.++|||||+++++|||||.|++||+|++.+|.+.+|||.|||||. +.|.+++|++.+..+....
T Consensus 413 eQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrdeayy 488 (542)
T COG1111 413 EQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDEAYY 488 (542)
T ss_pred HHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 7999999999985544333
No 100
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.9e-38 Score=389.24 Aligned_cols=351 Identities=23% Similarity=0.300 Sum_probs=272.8
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
-|++.+.+.+... |..|||.|.++|| .+.+|+|++++||||||||+++.||+++.+.+..
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~-~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~------------------ 66 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIP-EIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG------------------ 66 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHH-HHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc------------------
Confidence 3789999999888 9999999999999 5669999999999999999999999999997632
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeC
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~T 316 (1493)
......+..||+++|.|+|..++.+.+...+..+|+.+...+|+++.........+.|||+|+|
T Consensus 67 ----------------~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTT 130 (814)
T COG1201 67 ----------------KGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITT 130 (814)
T ss_pred ----------------CCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeC
Confidence 0122456889999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccC
Q psy16310 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396 (1493)
Q Consensus 317 P~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1493)
|+.|.-+|.... ....|.+++++||||.|.+.+...+.++.--+.++....
T Consensus 131 PEsL~lll~~~~-~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~---------------------------- 181 (814)
T COG1201 131 PESLAILLNSPK-FRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELA---------------------------- 181 (814)
T ss_pred hhHHHHHhcCHH-HHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC----------------------------
Confidence 999977776543 233577999999999999999999999998888885431
Q ss_pred CCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccC--CcccchhhhhccccccchhhhhhccC
Q psy16310 397 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHD 474 (1493)
Q Consensus 397 ~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1493)
+ ..|.+++|||+.+.. .+..|+.-.. ..++.........- .+
T Consensus 182 -~-~~qRIGLSATV~~~~------------------------~varfL~g~~~~~~Iv~~~~~k~~~i-----~v----- 225 (814)
T COG1201 182 -G-DFQRIGLSATVGPPE------------------------EVAKFLVGFGDPCEIVDVSAAKKLEI-----KV----- 225 (814)
T ss_pred -c-ccEEEeehhccCCHH------------------------HHHHHhcCCCCceEEEEcccCCcceE-----EE-----
Confidence 2 579999999997432 1122221111 01111100000000 00
Q ss_pred CcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecch
Q psy16310 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554 (1493)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~ 554 (1493)
..+... ... .-.........+.+++.++. .+|||+|||
T Consensus 226 -----------~~p~~~----------------------------~~~--~~~~~~~~~~~i~~~v~~~~-ttLIF~NTR 263 (814)
T COG1201 226 -----------ISPVED----------------------------LIY--DEELWAALYERIAELVKKHR-TTLIFTNTR 263 (814)
T ss_pred -----------EecCCc----------------------------ccc--ccchhHHHHHHHHHHHhhcC-cEEEEEeCh
Confidence 000000 000 00011123334445555555 899999999
Q ss_pred hhHHHHHHHHHhcC-CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHh
Q psy16310 555 SSVKRLTQLLTMLK-CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 633 (1493)
Q Consensus 555 ~~a~~L~~~L~~~~-~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~G 633 (1493)
..++.++..|...+ ..+..|||.++..+|..+.++|++|+.+++|||+.++-|||+.+|++||+|..|.++..++||+|
T Consensus 264 ~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiG 343 (814)
T COG1201 264 SGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIG 343 (814)
T ss_pred HHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhcc
Confidence 99999999999886 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cCCCCCeEEEEecC
Q psy16310 634 RTA-RANNEGLTVVLIES 650 (1493)
Q Consensus 634 Rag-R~g~~G~~i~l~~~ 650 (1493)
|+| |.|....++++...
T Consensus 344 RsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 344 RAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccccccCCcccEEEEecC
Confidence 999 45665777777654
No 101
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.3e-38 Score=371.84 Aligned_cols=333 Identities=21% Similarity=0.327 Sum_probs=255.4
Q ss_pred HHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHH
Q psy16310 782 ALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 860 (1493)
Q Consensus 782 ~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1493)
.|++ +||..++|-|.++|. .+..|+|+++..|||+||++||.+|++-.
T Consensus 8 ~L~~~fGy~~FR~gQ~evI~-~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------------------------ 56 (590)
T COG0514 8 VLKQVFGYASFRPGQQEIID-ALLSGKDTLVVMPTGGGKSLCYQIPALLL------------------------------ 56 (590)
T ss_pred HHHHHhCccccCCCHHHHHH-HHHcCCcEEEEccCCCCcchHhhhHHHhc------------------------------
Confidence 3443 599999999999997 55578999999999999999999998731
Q ss_pred HhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEECcHH
Q psy16310 861 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL----NKCPHILVATPGR 936 (1493)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~r 936 (1493)
..-+|||+|..+|...+.+.++..+ +.+.++.+..+..+....+ ....+++.-+|++
T Consensus 57 ---------------~G~TLVVSPLiSLM~DQV~~l~~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPEr 117 (590)
T COG0514 57 ---------------EGLTLVVSPLISLMKDQVDQLEAAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPER 117 (590)
T ss_pred ---------------CCCEEEECchHHHHHHHHHHHHHcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchh
Confidence 1259999999999999999998875 8999999887766654433 2347999999999
Q ss_pred HHHHHHhCcCccccccceeEEEecccchhccCC--ChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCc
Q psy16310 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014 (1493)
Q Consensus 937 l~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~--~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~ 1014 (1493)
|..--....+ .-..+.++||||||++++|| |.+++..+-...... ++.+++.+|||.++.+...+.
T Consensus 118 l~~~~f~~~L---~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~---~~~p~~AlTATA~~~v~~DI~------ 185 (590)
T COG0514 118 LMSPRFLELL---KRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL---PNPPVLALTATATPRVRDDIR------ 185 (590)
T ss_pred hcChHHHHHH---HhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhC---CCCCEEEEeCCCChHHHHHHH------
Confidence 8642211111 12357899999999999998 778777766554322 367899999999988766553
Q ss_pred CcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEe-cccchhhHHHHHHHhCCCcEEEEecchhhHHHH
Q psy16310 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 1093 (1493)
Q Consensus 1015 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l 1093 (1493)
..+.+..+..+...-. .+ ++....... ....+...+........+..||||.|++.|+.+
T Consensus 186 ----------------~~L~l~~~~~~~~sfd--Rp-Ni~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~i 246 (590)
T COG0514 186 ----------------EQLGLQDANIFRGSFD--RP-NLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEEL 246 (590)
T ss_pred ----------------HHhcCCCcceEEecCC--Cc-hhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHH
Confidence 3334444322211100 00 000000000 111222211111123466799999999999999
Q ss_pred HHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1094 ~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
++.|...|+.+..|||+|+..+|..+.++|..+++.|+|||.++++|||.|||++|||||+|.|+++|+|.+|||||.|.
T Consensus 247 a~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 247 AEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGL 326 (590)
T ss_pred HHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCHHHHHHHHHh
Q psy16310 1174 EGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1174 ~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
...|++|+.+.|....+.+...
T Consensus 327 ~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 327 PAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred cceEEEeeccccHHHHHHHHHh
Confidence 9999999999998877777655
No 102
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.1e-37 Score=399.21 Aligned_cols=342 Identities=18% Similarity=0.237 Sum_probs=246.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
.|++++|++.+++.+...+|. |+++|.++++ .+..++|++++||||||||++|.+++++.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~-~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------------- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIE-QLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------------- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHH-HHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------------
Confidence 467889999999999999997 9999999998 56788999999999999999999999877632
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
+.++||++||++||.|+++.+..+. ..++++...+|+....... .+.++
T Consensus 65 ---------------------------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~d 113 (674)
T PRK01172 65 ---------------------------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPDF---IKRYD 113 (674)
T ss_pred ---------------------------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChhh---hccCC
Confidence 2469999999999999999998764 4688999999987654322 24579
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||+++..++.+.. ..+.++++||+||||++.+.+++..++.++.++...
T Consensus 114 Iiv~Tpek~~~l~~~~~---~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~------------------------ 166 (674)
T PRK01172 114 VVILTSEKADSLIHHDP---YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV------------------------ 166 (674)
T ss_pred EEEECHHHHHHHHhCCh---hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc------------------------
Confidence 99999999988876543 236689999999999998888988898888765322
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
.+..|++++|||+++. .. +.+|+.... + ..... +..+... +..
T Consensus 167 ------~~~~riI~lSATl~n~-~~-----------------------la~wl~~~~--~---~~~~r-~vpl~~~-i~~ 209 (674)
T PRK01172 167 ------NPDARILALSATVSNA-NE-----------------------LAQWLNASL--I---KSNFR-PVPLKLG-ILY 209 (674)
T ss_pred ------CcCCcEEEEeCccCCH-HH-----------------------HHHHhCCCc--c---CCCCC-CCCeEEE-EEe
Confidence 3357999999999752 11 112221100 0 00000 0000000 000
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEe
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 551 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~ 551 (1493)
. ...+ .+ .. .........+.......++++||||
T Consensus 210 ~---~~~~----------------------------~~-------------~~--~~~~~~~~~~i~~~~~~~~~vLVF~ 243 (674)
T PRK01172 210 R---KRLI----------------------------LD-------------GY--ERSQVDINSLIKETVNDGGQVLVFV 243 (674)
T ss_pred c---Ceee----------------------------ec-------------cc--ccccccHHHHHHHHHhCCCcEEEEe
Confidence 0 0000 00 00 0000000111111123467999999
Q ss_pred cchhhHHHHHHHHHhc-------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhc
Q psy16310 552 NSISSVKRLTQLLTML-------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606 (1493)
Q Consensus 552 ~s~~~a~~L~~~L~~~-------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~r 606 (1493)
+++..|+.++..|... ..+++.|||+|++.+|..+++.|++|.++|||||+++++
T Consensus 244 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~ 323 (674)
T PRK01172 244 SSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAA 323 (674)
T ss_pred ccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhc
Confidence 9999999999888543 135778999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEecC---------CCChHHHHHHHhccccCCC--CCeEEEEecCCc
Q psy16310 607 GLDIPGIEHVIHYHV---------PRTSEIYIHRSGRTARANN--EGLTVVLIESDE 652 (1493)
Q Consensus 607 GlDip~v~~VI~yd~---------P~s~~~yiQR~GRagR~g~--~G~~i~l~~~~e 652 (1493)
|+|+|+..+|| +|. |.++.+|.||+|||||.|. .|.+++++...+
T Consensus 324 Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 324 GVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred cCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 99999875554 433 5688999999999999985 577888876543
No 103
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=4e-37 Score=402.80 Aligned_cols=329 Identities=20% Similarity=0.244 Sum_probs=222.2
Q ss_pred EEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHH
Q psy16310 811 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAI 890 (1493)
Q Consensus 811 v~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~ 890 (1493)
|+||||||||++|.+|++..++....... .......+.++|||+||++|+.
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~-----------------------------~~~~~~~~~raLYISPLKALa~ 51 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDT-----------------------------REAHKRKTSRILYISPIKALGT 51 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccc-----------------------------cccccCCCCEEEEEeChHHHHH
Confidence 57999999999999999999865311000 0001124578999999999999
Q ss_pred HHHHHHHHhh------------CCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEE
Q psy16310 891 QVQNHILDAG------------KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958 (1493)
Q Consensus 891 Q~~~~~~~~~------------~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lV 958 (1493)
|+++.++... ...++++...+|+++...+...+.+.+||||+||++|..++.+.. ...++++++||
T Consensus 52 Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VI 129 (1490)
T PRK09751 52 DVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA--RETLRGVETVI 129 (1490)
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhh--hhhhccCCEEE
Confidence 9999987521 125789999999999998888888889999999999988876432 23578999999
Q ss_pred ecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCC
Q psy16310 959 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 1038 (1493)
Q Consensus 959 lDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1038 (1493)
|||+|.|++..++..+...+.++... .+.+.|+|+||||+++. ........+ .....+... +....+ .+.
T Consensus 130 VDE~H~L~g~kRG~~Lel~LeRL~~l-~~~~~QrIgLSATI~n~-eevA~~L~g-~~pv~Iv~~-~~~r~~----~l~-- 199 (1490)
T PRK09751 130 IDEVHAVAGSKRGAHLALSLERLDAL-LHTSAQRIGLSATVRSA-SDVAAFLGG-DRPVTVVNP-PAMRHP----QIR-- 199 (1490)
T ss_pred EecHHHhcccccccHHHHHHHHHHHh-CCCCCeEEEEEeeCCCH-HHHHHHhcC-CCCEEEECC-CCCccc----ceE--
Confidence 99999999876666666666666432 23568999999999863 222211111 100011000 000000 000
Q ss_pred cEEeccccccccccceeeE--EEec-ccc-h---hhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcC----------
Q psy16310 1039 KIVDLTEKIGITKTLTESK--ILCK-HDE-K---DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK---------- 1101 (1493)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~-k---~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~---------- 1101 (1493)
..+................ .... ... . ...++..+ ....++||||||+..|+.++..|+...
T Consensus 200 v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i-~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~ 278 (1490)
T PRK09751 200 IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEV-LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSI 278 (1490)
T ss_pred EEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHH-hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccc
Confidence 0000000000000000000 0000 000 0 01111111 235789999999999999999997642
Q ss_pred -----------------------CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCCh
Q psy16310 1102 -----------------------CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158 (1493)
Q Consensus 1102 -----------------------~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~ 1158 (1493)
..+..|||+|++.+|..+++.|++|++++||||+++++|||+++|++||||+.|.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sV 358 (1490)
T PRK09751 279 AVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSV 358 (1490)
T ss_pred cchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCH
Confidence 115679999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCC-CCCCeEEEEe
Q psy16310 1159 EIYIHRSGRTARA-NNEGLTLVLI 1181 (1493)
Q Consensus 1159 ~~yiqr~GR~gR~-g~~G~~i~l~ 1181 (1493)
.+|+||+||+||. |..+.++++.
T Consensus 359 as~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 359 ASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHHHHHhCCCCCCCCCccEEEEEe
Confidence 9999999999997 3345555443
No 104
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.2e-37 Score=394.43 Aligned_cols=322 Identities=18% Similarity=0.177 Sum_probs=232.5
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHhhhhhhhcc-----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 157 NIPETIIRALYQ-KGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 157 ~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~-----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
..+..+.+.+.+ .+| .||++|.++|+.++.+ ++|+++|||||||||.+|++|++..+.
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~--------------- 498 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL--------------- 498 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH---------------
Confidence 445566666655 588 5999999999965542 379999999999999999999987663
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH---Hhc
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---ILN 307 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~---~l~ 307 (1493)
.+.+++||+||++||.|+++.|..+....++++..++|+.+...... .+.
T Consensus 499 ---------------------------~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~ 551 (926)
T TIGR00580 499 ---------------------------DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELA 551 (926)
T ss_pred ---------------------------hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHH
Confidence 23579999999999999999999988888899999999877544332 333
Q ss_pred -CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 308 -KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 308 -~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
+.++|||+||..+ . ... .+.++++|||||+|++. ......+..+
T Consensus 552 ~g~~dIVIGTp~ll----~-~~v---~f~~L~llVIDEahrfg-----v~~~~~L~~~---------------------- 596 (926)
T TIGR00580 552 SGKIDILIGTHKLL----Q-KDV---KFKDLGLLIIDEEQRFG-----VKQKEKLKEL---------------------- 596 (926)
T ss_pred cCCceEEEchHHHh----h-CCC---CcccCCEEEeecccccc-----hhHHHHHHhc----------------------
Confidence 3589999999533 2 222 35689999999999852 1222333222
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
....|+++||||+.+........ .......+........
T Consensus 597 -----------~~~~~vL~~SATpiprtl~~~l~------------------------g~~d~s~I~~~p~~R~------ 635 (926)
T TIGR00580 597 -----------RTSVDVLTLSATPIPRTLHMSMS------------------------GIRDLSIIATPPEDRL------ 635 (926)
T ss_pred -----------CCCCCEEEEecCCCHHHHHHHHh------------------------cCCCcEEEecCCCCcc------
Confidence 23479999999976543221100 0000000000000000
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCch--hhHHHHHHhhCC
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK--DSYLYYFILQHP 544 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--~~~l~~~l~~~~ 544 (1493)
.+... ....+.. ...+...+ ..+
T Consensus 636 ----------------------------------------------------~V~t~--v~~~~~~~i~~~i~~el-~~g 660 (926)
T TIGR00580 636 ----------------------------------------------------PVRTF--VMEYDPELVREAIRREL-LRG 660 (926)
T ss_pred ----------------------------------------------------ceEEE--EEecCHHHHHHHHHHHH-HcC
Confidence 00000 0000000 00111111 246
Q ss_pred CcEEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 622 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P 622 (1493)
++++|||+++.+++.++..|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||++++|
T Consensus 661 ~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~ 740 (926)
T TIGR00580 661 GQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERAD 740 (926)
T ss_pred CeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCC
Confidence 79999999999999999999875 6789999999999999999999999999999999999999999999999999997
Q ss_pred C-ChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 623 R-TSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 623 ~-s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
. +...|+||+||+||.|+.|+|++++.+.+
T Consensus 741 ~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 741 KFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred CCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 5 67899999999999999999999997654
No 105
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.6e-37 Score=382.73 Aligned_cols=415 Identities=19% Similarity=0.169 Sum_probs=330.3
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-----CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 772 ~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-----~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
.++.+......+.+..-...||-|..||..+... -.|-++||..|.|||.+++.+++..++
T Consensus 576 af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-------------- 641 (1139)
T COG1197 576 AFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-------------- 641 (1139)
T ss_pred CCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc--------------
Confidence 3567778888887766567799999999866532 258999999999999999999997764
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc--
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-- 924 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-- 924 (1493)
.|.+|.|||||.-||+|+++.|+...++++++|..++.-.+..++...+.
T Consensus 642 ----------------------------~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~l 693 (1139)
T COG1197 642 ----------------------------DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGL 693 (1139)
T ss_pred ----------------------------CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHH
Confidence 44689999999999999999999999999999999999888887766553
Q ss_pred --CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 925 --KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 925 --~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
...||||||+--|..- ..|+++++|||||-|++ +-.-..-++.+. .+..++-+|||+-+.
T Consensus 694 a~G~vDIvIGTHrLL~kd--------v~FkdLGLlIIDEEqRF-----GVk~KEkLK~Lr-----~~VDvLTLSATPIPR 755 (1139)
T COG1197 694 AEGKVDIVIGTHRLLSKD--------VKFKDLGLLIIDEEQRF-----GVKHKEKLKELR-----ANVDVLTLSATPIPR 755 (1139)
T ss_pred hcCCccEEEechHhhCCC--------cEEecCCeEEEechhhc-----CccHHHHHHHHh-----ccCcEEEeeCCCCcc
Confidence 4689999998655221 24778999999999994 334445555553 567899999997543
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEE
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IV 1082 (1493)
..... ..++++ +++.......+...+.++...++.-+...+..-..++|++..
T Consensus 756 TL~Ms------------------------m~GiRd---lSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfY 808 (1139)
T COG1197 756 TLNMS------------------------LSGIRD---LSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFY 808 (1139)
T ss_pred hHHHH------------------------Hhcchh---hhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEE
Confidence 22211 112222 222223333333444555545544444444445567999999
Q ss_pred EecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC-Chh
Q psy16310 1083 FCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR-TSE 1159 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~-s~~ 1159 (1493)
.+|.+++.+.++..|+.+ ..++.+.||.|+..+-+.+|..|.+|+.+|||||.+++.|||||++|++|..+.-. ..+
T Consensus 809 v~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLs 888 (1139)
T COG1197 809 VHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLA 888 (1139)
T ss_pred EecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHH
Confidence 999999999999999987 45788899999999999999999999999999999999999999999999877654 678
Q ss_pred HHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCch
Q psy16310 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN 1239 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 1239 (1493)
+..|..||+||..+.|+||+++.+.. .+.....+|+.+..++..++++++.++.+.
T Consensus 889 QLyQLRGRVGRS~~~AYAYfl~p~~k------------------------~lT~~A~kRL~aI~~~~~LGaGf~lA~~DL 944 (1139)
T COG1197 889 QLYQLRGRVGRSNKQAYAYFLYPPQK------------------------ALTEDAEKRLEAIASFTELGAGFKLAMHDL 944 (1139)
T ss_pred HHHHhccccCCccceEEEEEeecCcc------------------------ccCHHHHHHHHHHHhhhhcCchHHHHhcch
Confidence 89999999999999999999985543 333567789999999999999999999999
Q ss_pred HHHHHhhhhhhcccccchhccccCChhHHHHHHHHHHhhcCC--------CCCchhHHHHHHHHHhhhcc
Q psy16310 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL--------PDFPIDESVLSLIKKRIDLA 1301 (1493)
Q Consensus 1240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 1301 (1493)
.+|++|+..+.+|+| +|.+.||++|.+|+++++.++.- ....|+..+.++|+..+-.+
T Consensus 945 eIRGaGNlLG~eQSG----~I~~VGf~LY~~mLeeAI~~lk~~~e~~~~~~~~eIdL~~~a~iPe~YI~d 1010 (1139)
T COG1197 945 EIRGAGNLLGEEQSG----HIESVGFDLYMEMLEEAIAALKGSLEVLEEEKEVEIDLPVPAFIPEDYIPD 1010 (1139)
T ss_pred hccccccccCccccC----chheecHHHHHHHHHHHHHHHhcCCcccccCCCeeEecCCCCcCChhhccC
Confidence 999999999999999 99999999999999998875542 25567777889998876443
No 106
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.2e-37 Score=402.16 Aligned_cols=288 Identities=21% Similarity=0.266 Sum_probs=220.1
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.|+ .|||+|..++|. +..|+|++++||||||||+ |++|++..+.
T Consensus 77 ~G~-~pt~iQ~~~i~~-il~g~dv~i~ApTGsGKT~-f~l~~~~~l~--------------------------------- 120 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKR-LLLGESFAIIAPTGVGKTT-FGLVMSLYLA--------------------------------- 120 (1176)
T ss_pred cCC-CCcHHHHHHHHH-HHCCCcEEEEcCCCCCHHH-HHHHHHHHHH---------------------------------
Confidence 477 899999999995 4578999999999999996 6666554331
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCH-----HHHHHHhc-CCCcEEEECcHHHHH
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST-----EKQLRILN-KCPHILVATPGRLWE 939 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~-----~~~~~~l~-~~~~IlV~TP~rl~~ 939 (1493)
..+.++|||+|||+||.|+++.++.++...++.+..++|+... ..+...+. ..++|+|+||++|.+
T Consensus 121 --------~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~ 192 (1176)
T PRK09401 121 --------KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSK 192 (1176)
T ss_pred --------hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHH
Confidence 1256899999999999999999999998888888888877542 22333444 458999999999998
Q ss_pred HHHhCcCccccccceeEEEecccchhcc-----------CCCh-hHHHHHHHHhcccC-------------------CCC
Q psy16310 940 FIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHF-PELKNILDRVTMTE-------------------TSQ 988 (1493)
Q Consensus 940 ~l~~~~~~~~~l~~l~~lVlDEah~ll~-----------~~~~-~~l~~il~~l~~~~-------------------~~~ 988 (1493)
++. .+ ...++++||+||||+|++ .||. .++..++..++... .+.
T Consensus 193 ~~~--~l---~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~ 267 (1176)
T PRK09401 193 NFD--EL---PKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDK 267 (1176)
T ss_pred HHH--hc---cccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccC
Confidence 876 11 234589999999999996 5774 57777777764300 112
Q ss_pred CceEEEEecccccc-hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhh
Q psy16310 989 PRQTFVFSATLTHS-LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067 (1493)
Q Consensus 989 ~~q~ll~SATl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 1067 (1493)
.+|+++||||+++. +...+. .....+.+........++.+.++.+. ++..
T Consensus 268 ~~q~ilfSAT~~~~~~~~~l~---------------------------~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~ 318 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRVKLF---------------------------RELLGFEVGSPVFYLRNIVDSYIVDE--DSVE 318 (1176)
T ss_pred CceEEEEeCCCCccchHHHHh---------------------------hccceEEecCcccccCCceEEEEEcc--cHHH
Confidence 68999999999853 322110 00011222222233455666666554 5666
Q ss_pred HHHHHHHhCCCcEEEEecchhh---HHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEe----ehhhhcc
Q psy16310 1068 YLYYFILQHPGRTLVFCNSISS---VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARG 1140 (1493)
Q Consensus 1068 ~l~~~l~~~~~~~IVF~~s~~~---~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVa----Tdv~~~G 1140 (1493)
.+..++...+.++||||+++.. |+.++..|...|+++..+||+| .+.+++|++|+++|||| ||+++||
T Consensus 319 ~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRG 393 (1176)
T PRK09401 319 KLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRG 393 (1176)
T ss_pred HHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeec
Confidence 7777777777899999999888 9999999999999999999999 23459999999999999 6999999
Q ss_pred ccCCC-ccEEEEecCCC
Q psy16310 1141 LDIPG-IEHVIHYHVPR 1156 (1493)
Q Consensus 1141 iDip~-v~~VI~~d~p~ 1156 (1493)
||+|+ |++|||||+|.
T Consensus 394 IDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 394 IDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CCCCcceeEEEEeCCCC
Confidence 99999 89999999997
No 107
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.9e-37 Score=363.51 Aligned_cols=365 Identities=20% Similarity=0.300 Sum_probs=268.8
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.||..+++-|.++|. .+.+++|+++.+|||+||+++|.+|++-.
T Consensus 13 fGy~~FR~gQ~evI~-~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------------------------------- 56 (590)
T COG0514 13 FGYASFRPGQQEIID-ALLSGKDTLVVMPTGGGKSLCYQIPALLL----------------------------------- 56 (590)
T ss_pred hCccccCCCHHHHHH-HHHcCCcEEEEccCCCCcchHhhhHHHhc-----------------------------------
Confidence 599999999999997 66688999999999999999999998721
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh----cCCCCEEEeCcHHHHHHH
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL----NKCPHILVATPGRLWEFI 324 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l----~~~~~IiV~TP~~L~~~l 324 (1493)
..-+|||+|..+|+..+.+.++.. |+.+..+.+..+..+....+ ....+++.-+|++|..--
T Consensus 57 ----------~G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~ 122 (590)
T COG0514 57 ----------EGLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPR 122 (590)
T ss_pred ----------CCCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChH
Confidence 124999999999999999999886 68888888887766654333 234789999999986432
Q ss_pred HcCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCce
Q psy16310 325 QLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402 (1493)
Q Consensus 325 ~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 402 (1493)
....+. -..+.++||||||++.+|| |.+.+..+-...... +...
T Consensus 123 f~~~L~---~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~-------------------------------~~~p 168 (590)
T COG0514 123 FLELLK---RLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL-------------------------------PNPP 168 (590)
T ss_pred HHHHHH---hCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhC-------------------------------CCCC
Confidence 111111 2268999999999999997 888888776654322 2467
Q ss_pred EEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHH
Q psy16310 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482 (1493)
Q Consensus 403 ~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1493)
++.++||.++.+..-+.. .+....+... .....+.. +++
T Consensus 169 ~~AlTATA~~~v~~DI~~----------------------~L~l~~~~~~------------------~~sfdRpN-i~~ 207 (590)
T COG0514 169 VLALTATATPRVRDDIRE----------------------QLGLQDANIF------------------RGSFDRPN-LAL 207 (590)
T ss_pred EEEEeCCCChHHHHHHHH----------------------HhcCCCcceE------------------EecCCCch-hhh
Confidence 999999999876543321 1111111000 00000000 111
Q ss_pred HHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHH
Q psy16310 483 FILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 562 (1493)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~ 562 (1493)
.+.... ....+..++...+....+++||||.|++.++.+++
T Consensus 208 ~v~~~~---------------------------------------~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~ 248 (590)
T COG0514 208 KVVEKG---------------------------------------EPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAE 248 (590)
T ss_pred hhhhcc---------------------------------------cHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHH
Confidence 110000 00011111111112335678999999999999999
Q ss_pred HHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC
Q psy16310 563 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642 (1493)
Q Consensus 563 ~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G 642 (1493)
.|...|+.+..|||+|+..+|..+.++|..+++.|+|||..+++|||.|+|++|||||+|.|+++|+|-+|||||.|.+.
T Consensus 249 ~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a 328 (590)
T COG0514 249 WLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPA 328 (590)
T ss_pred HHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCcchhhhhhhhhhccchHHHHHHHhhhcccccchhhhhhhhhhhhcc
Q psy16310 643 LTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRK 697 (1493)
Q Consensus 643 ~~i~l~~~~e~~~~~~l~~~~~~~~e~~e~~~~~~~~~e~~~~~vss~k~k~kr~ 697 (1493)
.|++|+++.|......+.....+..+...........+...+....|.+...-..
T Consensus 329 ~aill~~~~D~~~~~~~i~~~~~~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~y 383 (590)
T COG0514 329 EAILLYSPEDIRWQRYLIEQSKPDEEQKQIELAKLRQMIAYCETQTCRRLVLLKY 383 (590)
T ss_pred eEEEeeccccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcccccchHHHHHHh
Confidence 9999999999998888877766655544444444444555555555555554433
No 108
>KOG0349|consensus
Probab=100.00 E-value=7.6e-38 Score=339.95 Aligned_cols=319 Identities=26% Similarity=0.352 Sum_probs=226.9
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHhhCC---CCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcccc
Q psy16310 874 RNKLYALILAPTRELAIQVQNHILDAGKY---TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950 (1493)
Q Consensus 874 ~~~~~~lil~PTreLa~Q~~~~~~~~~~~---~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~ 950 (1493)
...+.++|+-|+|||++|.++.++++-.+ ..++..++.||.....|...+..+.+|+|+||||+.+.+..+.. .
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~---~ 360 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLV---T 360 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccce---e
Confidence 55688999999999999999977666544 35677789999999999999999999999999999999987764 4
Q ss_pred ccceeEEEecccchhccCCChhHHHHHHHHhcccC-CCCCceEEEEecccccc-hHhHHhhhccCcCccccc--------
Q psy16310 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTE-TSQPRQTFVFSATLTHS-LKNSLNLKKGQSKSKKVS-------- 1020 (1493)
Q Consensus 951 l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~-~~~~~q~ll~SATl~~~-~~~~~~~~~~~~~~~~~~-------- 1020 (1493)
+.+++++|+||||.++..++-+.+..+...++.-. .....|.+++|||+..- +.......+..+.-....
T Consensus 361 lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpet 440 (725)
T KOG0349|consen 361 LTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPET 440 (725)
T ss_pred eeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchh
Confidence 56899999999999999999888888887776422 22567999999998621 111110000000000000
Q ss_pred ----------CCCchhHHHHhHhccCCCcEEe-ccccccccccceeeEEEecccchhhHHHHHHHh-CCCcEEEEecchh
Q psy16310 1021 ----------KGDPSIKRLQDLLNIKSPKIVD-LTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNSIS 1088 (1493)
Q Consensus 1021 ----------~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~IVF~~s~~ 1088 (1493)
..+.....+.+.+........+ +......+.+..+.... -+..+.+..+.+ ...++||||.|+.
T Consensus 441 vHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~ki----lkgEy~v~ai~~h~mdkaiifcrtk~ 516 (725)
T KOG0349|consen 441 VHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKI----LKGEYGVVAIRRHAMDKAIIFCRTKQ 516 (725)
T ss_pred hccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHH----hcCchhhhhhhhhccCceEEEEeccc
Confidence 0111222222222111100000 00000000000000000 011111222222 2568999999999
Q ss_pred hHHHHHHHHHhcC---CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1089 SVKRLTQLLTMLK---CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1089 ~~~~l~~~L~~~~---~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
.|+.|..+|.+.| +.+..+||+..+.+|...++.|+.+..+.||||||++||+||.++-++||.-+|.+...|+|||
T Consensus 517 dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhri 596 (725)
T KOG0349|consen 517 DCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRI 596 (725)
T ss_pred cchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhh
Confidence 9999999998875 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1166 GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
||+||+.+-|.+|.++.......|...+++.++.
T Consensus 597 grvgraermglaislvat~~ekvwyh~c~srgr~ 630 (725)
T KOG0349|consen 597 GRVGRAERMGLAISLVATVPEKVWYHWCKSRGRS 630 (725)
T ss_pred hccchhhhcceeEEEeeccchheeehhhhccCCc
Confidence 9999999999999999776656666666666553
No 109
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=8.4e-36 Score=379.98 Aligned_cols=316 Identities=21% Similarity=0.265 Sum_probs=223.9
Q ss_pred HHHH-HHHHCCCCCChHHHHhhhhhhhcc-----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHH
Q psy16310 161 TIIR-ALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234 (1493)
Q Consensus 161 ~l~~-~l~~~g~~~pt~iQ~~~i~~~l~~-----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 234 (1493)
.+.+ ....++| .||++|.++++.++.+ ..|++++||||||||++|++|++..+.
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------------------- 308 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------------------- 308 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-------------------
Confidence 4444 4455688 5999999999965533 248999999999999999999987662
Q ss_pred HHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHH---HHHhcC-CC
Q psy16310 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ---LRILNK-CP 310 (1493)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~---~~~l~~-~~ 310 (1493)
.+.+++||+||++||.|+++.+..++..+++++..++|+.+.... +..+.. .+
T Consensus 309 -----------------------~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~ 365 (681)
T PRK10917 309 -----------------------AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEA 365 (681)
T ss_pred -----------------------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCC
Confidence 346799999999999999999999998889999999999886443 333333 58
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||+.+.+. . .+.+++++||||+|++... ....+...
T Consensus 366 ~IvVgT~~ll~~~-----v---~~~~l~lvVIDE~Hrfg~~-----qr~~l~~~-------------------------- 406 (681)
T PRK10917 366 DIVIGTHALIQDD-----V---EFHNLGLVIIDEQHRFGVE-----QRLALREK-------------------------- 406 (681)
T ss_pred CEEEchHHHhccc-----c---hhcccceEEEechhhhhHH-----HHHHHHhc--------------------------
Confidence 9999999987432 1 2558899999999986321 11111111
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
....++++||||+.+....+... ++. ....+..
T Consensus 407 -------~~~~~iL~~SATp~prtl~~~~~------------g~~------------~~s~i~~---------------- 439 (681)
T PRK10917 407 -------GENPHVLVMTATPIPRTLAMTAY------------GDL------------DVSVIDE---------------- 439 (681)
T ss_pred -------CCCCCEEEEeCCCCHHHHHHHHc------------CCC------------ceEEEec----------------
Confidence 22368999999976432211100 000 0000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchh---hHHHHHHhhCCCcE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD---SYLYYFILQHPGRT 547 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~---~~l~~~l~~~~~~~ 547 (1493)
.+.. . ..+.. .......+. ..+...+ ..+.++
T Consensus 440 ----------------~p~~------------r--------------~~i~~--~~~~~~~~~~~~~~i~~~~-~~g~q~ 474 (681)
T PRK10917 440 ----------------LPPG------------R--------------KPITT--VVIPDSRRDEVYERIREEI-AKGRQA 474 (681)
T ss_pred ----------------CCCC------------C--------------CCcEE--EEeCcccHHHHHHHHHHHH-HcCCcE
Confidence 0000 0 00000 000001111 1111222 345799
Q ss_pred EEEecch--------hhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE
Q psy16310 548 LVFCNSI--------SSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617 (1493)
Q Consensus 548 IIF~~s~--------~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI 617 (1493)
+|||+.. ..+..+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||
T Consensus 475 ~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VI 554 (681)
T PRK10917 475 YVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMV 554 (681)
T ss_pred EEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEE
Confidence 9999954 4556677777655 46899999999999999999999999999999999999999999999999
Q ss_pred EecCCC-ChHHHHHHHhccccCCCCCeEEEEecC
Q psy16310 618 HYHVPR-TSEIYIHRSGRTARANNEGLTVVLIES 650 (1493)
Q Consensus 618 ~yd~P~-s~~~yiQR~GRagR~g~~G~~i~l~~~ 650 (1493)
+|++|. +...|.||+||+||.|..|+|+++++.
T Consensus 555 i~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 555 IENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred EeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 999997 477788899999999999999999963
No 110
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.4e-36 Score=392.52 Aligned_cols=319 Identities=19% Similarity=0.201 Sum_probs=228.7
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhcc-----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHH
Q psy16310 160 ETIIRALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234 (1493)
Q Consensus 160 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 234 (1493)
.+..+.....+| .||++|.++|+.++.+ .+|+++||+||||||.+|+++++..+.
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------------------- 647 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------------------- 647 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-------------------
Confidence 344555677788 6999999999965543 379999999999999999988875442
Q ss_pred HHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc----CCC
Q psy16310 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN----KCP 310 (1493)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~----~~~ 310 (1493)
.+.+++||+||++||.|+++.|.......++++.+++|+.+...+...+. +.+
T Consensus 648 -----------------------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~ 704 (1147)
T PRK10689 648 -----------------------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKI 704 (1147)
T ss_pred -----------------------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 34679999999999999999999877777899999999888776655432 468
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|||+||+.| . ... .+.++++|||||+|++ ++. + ...+..+
T Consensus 705 dIVVgTp~lL----~-~~v---~~~~L~lLVIDEahrf---G~~-~-~e~lk~l-------------------------- 745 (1147)
T PRK10689 705 DILIGTHKLL----Q-SDV---KWKDLGLLIVDEEHRF---GVR-H-KERIKAM-------------------------- 745 (1147)
T ss_pred CEEEECHHHH----h-CCC---CHhhCCEEEEechhhc---chh-H-HHHHHhc--------------------------
Confidence 9999999754 2 222 2458999999999987 221 1 2222222
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
+..+|+++||||+.+....+..... ..+..+........
T Consensus 746 -------~~~~qvLl~SATpiprtl~l~~~gl------------------------~d~~~I~~~p~~r~---------- 784 (1147)
T PRK10689 746 -------RADVDILTLTATPIPRTLNMAMSGM------------------------RDLSIIATPPARRL---------- 784 (1147)
T ss_pred -------CCCCcEEEEcCCCCHHHHHHHHhhC------------------------CCcEEEecCCCCCC----------
Confidence 3457999999998765433221000 00000000000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccccc-CchhhHHHHHHhhCCCcEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTLV 549 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~II 549 (1493)
. +......... ..+...+..+. .+++++|
T Consensus 785 --------------------------------------------~----v~~~~~~~~~~~~k~~il~el~--r~gqv~v 814 (1147)
T PRK10689 785 --------------------------------------------A----VKTFVREYDSLVVREAILREIL--RGGQVYY 814 (1147)
T ss_pred --------------------------------------------C----ceEEEEecCcHHHHHHHHHHHh--cCCeEEE
Confidence 0 0000000000 00111122221 3578999
Q ss_pred EecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCC-CChH
Q psy16310 550 FCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP-RTSE 626 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P-~s~~ 626 (1493)
||+++..++.+++.|... +..+..+||+|++.+|.+++.+|++|+++|||||+++++|||+|+|++||.++.. .+..
T Consensus 815 f~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgla 894 (1147)
T PRK10689 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 (1147)
T ss_pred EECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHH
Confidence 999999999999999887 7789999999999999999999999999999999999999999999999955443 2456
Q ss_pred HHHHHHhccccCCCCCeEEEEecCC
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
.|+||+|||||.|+.|+|++++...
T Consensus 895 q~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 895 QLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred HHHHHhhccCCCCCceEEEEEeCCC
Confidence 7999999999999999999998654
No 111
>KOG0354|consensus
Probab=100.00 E-value=3.6e-36 Score=360.50 Aligned_cols=415 Identities=21% Similarity=0.213 Sum_probs=255.8
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
..-.++.||.+....|| ++|+||++|||+|||++++..+++|+-.
T Consensus 59 ~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw--------------------------------- 103 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEW--------------------------------- 103 (746)
T ss_pred CcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhc---------------------------------
Confidence 34468999999999888 7999999999999999999999998832
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
.+..++||++||+.|+.|+...+..++.+ ..+....||+........+....+|+|+||+.|.+.|.++..
T Consensus 104 -------~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~ 174 (746)
T KOG0354|consen 104 -------RPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH 174 (746)
T ss_pred -------CCcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc
Confidence 34478999999999999999777776643 677777788666655556667789999999999999987654
Q ss_pred cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
.. |+.+.++||||||+....+.+..+..-+-.+. ....|++++|||
T Consensus 175 ~~--ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k--------------------------------~~~~qILgLTAS 220 (746)
T KOG0354|consen 175 DE--LSDFSLIVFDECHRTSKNHPYNNIMREYLDLK--------------------------------NQGNQILGLTAS 220 (746)
T ss_pred cc--cceEEEEEEcccccccccccHHHHHHHHHHhh--------------------------------hccccEEEEecC
Confidence 43 77899999999999988887776664443332 122399999999
Q ss_pred cchhhhhhhhhh-----------------------ccccccccccCC-----CchhhhHHhhhhcc-CCcccchhh---h
Q psy16310 410 LTHSLKNSLNLK-----------------------KGQSKSKKVSKG-----DPSIKRLQDLLNIK-SPKIVDLTE---K 457 (1493)
Q Consensus 410 l~~~~~~~~~~~-----------------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~---~ 457 (1493)
+........... ........+... ++....+..++... ...+..... .
T Consensus 221 pG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~ 300 (746)
T KOG0354|consen 221 PGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTS 300 (746)
T ss_pred CCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccccccccc
Confidence 975433221110 000000001000 00000011111000 000000000 0
Q ss_pred hccccccchhhhhhccCCcch--h-----hHH---HHhcCCCcchhhHHHhhhhccCCcccc-----ccccccccc---c
Q psy16310 458 IGITKTLTESKILCKHDEKDS--Y-----LYY---FILQHPGRTLCEEIQDLLNIKSPKIVD-----LTEKIGITK---T 519 (1493)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~--~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~ 519 (1493)
+.......+............ + ..+ ++....-+ ....+............. ..+...+.. .
T Consensus 301 ~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir-~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~ 379 (746)
T KOG0354|consen 301 YEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIR-FVDALDYLEDFYEEVALKKYLKLELEARLIRNFTEN 379 (746)
T ss_pred ccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchh-hHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHH
Confidence 000000000000000000000 0 000 00000000 000111111111000000 000000000 0
Q ss_pred ---ccccc-cccccCchhhHHHHHHhhC-----CCcEEEEecchhhHHHHHHHHHh-c--CCCcccccc--------CCC
Q psy16310 520 ---LTESK-ILCKHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTM-L--KCSPLPLHA--------SMN 579 (1493)
Q Consensus 520 ---~~~~~-~~~~~~~k~~~l~~~l~~~-----~~~~IIF~~s~~~a~~L~~~L~~-~--~~~~~~lhg--------~~~ 579 (1493)
+.... .......|...+..++..+ ..++||||.+|.+|..|..+|.. . ++....+.| +|+
T Consensus 380 m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmt 459 (746)
T KOG0354|consen 380 MNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMT 459 (746)
T ss_pred HHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccC
Confidence 00000 0112356666666666543 57999999999999999999973 2 334443333 899
Q ss_pred HHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 580 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 580 ~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
+.+|..+++.|+.|+++|||||+|+++||||+.|++||.||..+|++..|||+|| ||+. .|.|++|++..+...++..
T Consensus 460 qk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~~~~~E~~ 537 (746)
T KOG0354|consen 460 QKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSEVIEFERN 537 (746)
T ss_pred HHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 9985 8999999997777776666
Q ss_pred hhhhcc
Q psy16310 660 NLQEEE 665 (1493)
Q Consensus 660 ~~~~~~ 665 (1493)
+...+.
T Consensus 538 ~~~~e~ 543 (746)
T KOG0354|consen 538 NLAKEK 543 (746)
T ss_pred HHhHHH
Confidence 554443
No 112
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.6e-35 Score=375.51 Aligned_cols=319 Identities=24% Similarity=0.326 Sum_probs=225.2
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhcc-----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHH
Q psy16310 160 ETIIRALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234 (1493)
Q Consensus 160 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 234 (1493)
..+.+.+..++| .||++|.++|+.++.+ ..+.+++||||||||++|++|++..+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------------- 282 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------------- 282 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-------------------
Confidence 344566678899 6999999999965533 136899999999999999999987662
Q ss_pred HHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHH---HHHhc-CCC
Q psy16310 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ---LRILN-KCP 310 (1493)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~---~~~l~-~~~ 310 (1493)
.+.+++||+||++||.|+++.+.+++..+++++.+++|+...... +..+. +.+
T Consensus 283 -----------------------~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~ 339 (630)
T TIGR00643 283 -----------------------AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQI 339 (630)
T ss_pred -----------------------cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCC
Confidence 245799999999999999999999998889999999999876653 33333 457
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||+.+.+. . .+.++++|||||+|++... +...+.....
T Consensus 340 ~IiVgT~~ll~~~-----~---~~~~l~lvVIDEaH~fg~~----qr~~l~~~~~------------------------- 382 (630)
T TIGR00643 340 HLVVGTHALIQEK-----V---EFKRLALVIIDEQHRFGVE----QRKKLREKGQ------------------------- 382 (630)
T ss_pred CEEEecHHHHhcc-----c---cccccceEEEechhhccHH----HHHHHHHhcc-------------------------
Confidence 9999999987532 1 2557899999999986321 1111221110
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
....+++++||||+.+....+.. . ++.. .....
T Consensus 383 ------~~~~~~~l~~SATp~prtl~l~~--~----------~~l~------------~~~i~----------------- 415 (630)
T TIGR00643 383 ------GGFTPHVLVMSATPIPRTLALTV--Y----------GDLD------------TSIID----------------- 415 (630)
T ss_pred ------cCCCCCEEEEeCCCCcHHHHHHh--c----------CCcc------------eeeec-----------------
Confidence 00246899999997543211100 0 0000 00000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHh---hCCCcE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHPGRT 547 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~ 547 (1493)
..+.. ..+ ... .......+ ..++..+. ..+.++
T Consensus 416 ---------------~~p~~------------r~~--------------i~~--~~~~~~~~-~~~~~~i~~~l~~g~q~ 451 (630)
T TIGR00643 416 ---------------ELPPG------------RKP--------------ITT--VLIKHDEK-DIVYEFIEEEIAKGRQA 451 (630)
T ss_pred ---------------cCCCC------------CCc--------------eEE--EEeCcchH-HHHHHHHHHHHHhCCcE
Confidence 00000 000 000 00000111 12222222 235689
Q ss_pred EEEecch--------hhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE
Q psy16310 548 LVFCNSI--------SSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617 (1493)
Q Consensus 548 IIF~~s~--------~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI 617 (1493)
+|||+.. ..+..+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||
T Consensus 452 ~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VI 531 (630)
T TIGR00643 452 YVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMV 531 (630)
T ss_pred EEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEE
Confidence 9999876 4566777777653 67899999999999999999999999999999999999999999999999
Q ss_pred EecCCC-ChHHHHHHHhccccCCCCCeEEEEec
Q psy16310 618 HYHVPR-TSEIYIHRSGRTARANNEGLTVVLIE 649 (1493)
Q Consensus 618 ~yd~P~-s~~~yiQR~GRagR~g~~G~~i~l~~ 649 (1493)
+|+.|. +...|.||+||+||.|..|+|++++.
T Consensus 532 i~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 532 IEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999997 67788899999999999999999993
No 113
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.2e-36 Score=391.74 Aligned_cols=335 Identities=20% Similarity=0.224 Sum_probs=221.9
Q ss_pred EEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHH
Q psy16310 194 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAI 273 (1493)
Q Consensus 194 v~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~ 273 (1493)
|+||||||||++|.||++..++........ ......+.++|||+||++|+.
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~-----------------------------~~~~~~~~raLYISPLKALa~ 51 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTR-----------------------------EAHKRKTSRILYISPIKALGT 51 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhccccccc-----------------------------ccccCCCCEEEEEeChHHHHH
Confidence 589999999999999999988742100000 000123578999999999999
Q ss_pred HHHHHHHHhc------------CCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEE
Q psy16310 274 QVQNHILDAG------------KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341 (1493)
Q Consensus 274 Qi~~~~~~l~------------~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lV 341 (1493)
|+.+.++... ...++++...+|+++...+...+.+.++|||+||++|..+|.+.. ...|+++++||
T Consensus 52 Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VI 129 (1490)
T PRK09751 52 DVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA--RETLRGVETVI 129 (1490)
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhh--hhhhccCCEEE
Confidence 9999886421 135799999999999998888888889999999999988876532 23477999999
Q ss_pred EecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhh
Q psy16310 342 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLK 421 (1493)
Q Consensus 342 iDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~ 421 (1493)
|||+|.|++..++.++...+.++... .+.+.|+|+||||+++. ....
T Consensus 130 VDE~H~L~g~kRG~~Lel~LeRL~~l-----------------------------~~~~~QrIgLSATI~n~-eevA--- 176 (1490)
T PRK09751 130 IDEVHAVAGSKRGAHLALSLERLDAL-----------------------------LHTSAQRIGLSATVRSA-SDVA--- 176 (1490)
T ss_pred EecHHHhcccccccHHHHHHHHHHHh-----------------------------CCCCCeEEEEEeeCCCH-HHHH---
Confidence 99999999877888888888877432 13457999999999862 2221
Q ss_pred ccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhh
Q psy16310 422 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLN 501 (1493)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1493)
.++....+..+.... . .... ...+.+. .... ..+..
T Consensus 177 --------------------~~L~g~~pv~Iv~~~-~--~r~~-~l~v~vp----------------~~d~----~~~~~ 212 (1490)
T PRK09751 177 --------------------AFLGGDRPVTVVNPP-A--MRHP-QIRIVVP----------------VANM----DDVSS 212 (1490)
T ss_pred --------------------HHhcCCCCEEEECCC-C--Cccc-ceEEEEe----------------cCch----hhccc
Confidence 122110000000000 0 0000 0000000 0000 00000
Q ss_pred ccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcC-------------
Q psy16310 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK------------- 568 (1493)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~------------- 568 (1493)
.. .... ..................+...+ ....++||||||+..|+.++..|+...
T Consensus 213 -~~-------~~~~--~~~~~~r~~~i~~~v~~~il~~i-~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~ 281 (1490)
T PRK09751 213 -VA-------SGTG--EDSHAGREGSIWPYIETGILDEV-LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVD 281 (1490)
T ss_pred -cc-------cccc--cccchhhhhhhhHHHHHHHHHHH-hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccch
Confidence 00 0000 00000000000000001112212 235689999999999999999887541
Q ss_pred --------------------CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHH
Q psy16310 569 --------------------CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628 (1493)
Q Consensus 569 --------------------~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~y 628 (1493)
..+..|||+|++.+|..+++.|++|+++|||||+++++||||++|++||+|+.|.++.+|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~ 361 (1490)
T PRK09751 282 AAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASG 361 (1490)
T ss_pred hhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHH
Confidence 125679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccC-CCCCeEEEE
Q psy16310 629 IHRSGRTARA-NNEGLTVVL 647 (1493)
Q Consensus 629 iQR~GRagR~-g~~G~~i~l 647 (1493)
+||+|||||. |..+.++++
T Consensus 362 LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 362 LQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred HHHhCCCCCCCCCccEEEEE
Confidence 9999999996 223455543
No 114
>KOG0349|consensus
Probab=100.00 E-value=9.5e-37 Score=331.44 Aligned_cols=332 Identities=26% Similarity=0.353 Sum_probs=221.5
Q ss_pred ccCceEEEEEcccHHHHHHHHHHHHHhc---CCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 256 TRNKLYALILAPTRELAIQVQNHILDAG---KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 256 ~~~~~~aLiL~PTreLa~Qi~~~~~~l~---~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
..+.+.++|+-|.|+|+.|.++.++++- ....++..++.||.....|...+..+.+|+|+||+||.+.+..+...
T Consensus 283 ~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~-- 360 (725)
T KOG0349|consen 283 APNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVT-- 360 (725)
T ss_pred CCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcccee--
Confidence 3567899999999999999999665553 34457777889999999999999999999999999999999887664
Q ss_pred ccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccch
Q psy16310 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~ 412 (1493)
|++++++|+||||.+|..++.+.+.++...++... ......|.+++|||+..
T Consensus 361 -lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~t---------------------------sdg~rlq~~vCsatlh~ 412 (725)
T KOG0349|consen 361 -LTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMT---------------------------SDGFRLQSPVCSATLHI 412 (725)
T ss_pred -eeeeEEEEecchhhhhhcccHHHHHHHhccchhhh---------------------------cCCcccccceeeeEEeE
Confidence 44899999999999999999998888887765431 12355799999999863
Q ss_pred h-hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcc
Q psy16310 413 S-LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491 (1493)
Q Consensus 413 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1493)
- +........ .-|..+++...-..+.+..+...++.... +.
T Consensus 413 feVkk~~ervm------------------------hfptwVdLkgeD~vpetvHhvv~lv~p~~-d~------------- 454 (725)
T KOG0349|consen 413 FEVKKVGERVM------------------------HFPTWVDLKGEDLVPETVHHVVKLVCPSV-DG------------- 454 (725)
T ss_pred EEeeehhhhhc------------------------cCceeEecccccccchhhccceeecCCcc-Cc-------------
Confidence 1 111110000 01111111111111111111111100000 00
Q ss_pred hhhHHHhhhhccCCcccccccccc-ccccccccccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcC-
Q psy16310 492 LCEEIQDLLNIKSPKIVDLTEKIG-ITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLK- 568 (1493)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~- 568 (1493)
....++..+.....-..+-..... .+...++...+ -|-.+-...+..+ ..++||||.|..+|..|.+++...|
T Consensus 455 sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~ki----lkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg 530 (725)
T KOG0349|consen 455 SWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKI----LKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGG 530 (725)
T ss_pred cHHHHhhhhccCCcccccccccccCCCCChhhhhHH----hcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCC
Confidence 000111111100000000000000 00000000000 0001111122222 4699999999999999999998874
Q ss_pred --CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEE
Q psy16310 569 --CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646 (1493)
Q Consensus 569 --~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~ 646 (1493)
+++..+||+..+.+|...++.|+.+..+.||||||++|||||.++-++||..+|.+...|+||+||+||+.+-|.+|.
T Consensus 531 ~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglais 610 (725)
T KOG0349|consen 531 KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAIS 610 (725)
T ss_pred ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEE
Confidence 578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcchhhhhh
Q psy16310 647 LIESDEIPLKTKF 659 (1493)
Q Consensus 647 l~~~~e~~~~~~l 659 (1493)
|+...-...+..+
T Consensus 611 lvat~~ekvwyh~ 623 (725)
T KOG0349|consen 611 LVATVPEKVWYHW 623 (725)
T ss_pred Eeeccchheeehh
Confidence 9876555555444
No 115
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6.3e-36 Score=399.64 Aligned_cols=334 Identities=16% Similarity=0.143 Sum_probs=246.7
Q ss_pred HHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHH
Q psy16310 778 TIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 856 (1493)
Q Consensus 778 ~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (1493)
++.+.+++ .|| .||++|..+||.++ .|+|++++||||||||++++++++...
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il-~G~d~li~APTGsGKTl~~~~~al~~~------------------------- 119 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRIL-RGKSFSIVAPTGMGKSTFGAFIALFLA------------------------- 119 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHH-cCCCEEEEEcCCCCHHHHHHHHHHHHH-------------------------
Confidence 44556665 799 69999999999654 788999999999999996665544321
Q ss_pred HHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC--CcEEEEEEcCCCHHHHHH---HhcC-CCcEE
Q psy16310 857 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT--PVKVACVVGGMSTEKQLR---ILNK-CPHIL 930 (1493)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~--~~~v~~~~gg~~~~~~~~---~l~~-~~~Il 930 (1493)
..+.++|||+||++|+.|+++.++.++..+ ++++..++||.+...+.. .+.. .++|+
T Consensus 120 -----------------~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dIL 182 (1638)
T PRK14701 120 -----------------LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDIL 182 (1638)
T ss_pred -----------------hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEE
Confidence 134579999999999999999999988765 467788899998776643 3333 58999
Q ss_pred EECcHHHHHHHHhCcCccccccceeEEEecccchhcc-----------CCChhHHHH-HHHHhcc---------------
Q psy16310 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHFPELKN-ILDRVTM--------------- 983 (1493)
Q Consensus 931 V~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-----------~~~~~~l~~-il~~l~~--------------- 983 (1493)
|+||++|.+.+... . ..++++||+||||+|++ .||.+++.. ++..+..
T Consensus 183 V~TPgrL~~~~~~l----~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~ 257 (1638)
T PRK14701 183 VTTAQFLARNFPEM----K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREI 257 (1638)
T ss_pred EECCchhHHhHHHH----h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhh
Confidence 99999998876531 1 14689999999999987 478777764 2221110
Q ss_pred -----cCCCCCce-EEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeE
Q psy16310 984 -----TETSQPRQ-TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 1057 (1493)
Q Consensus 984 -----~~~~~~~q-~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1493)
...+..+| ++++|||++..... ... +..+..+.+........++.+.+
T Consensus 258 l~~~~~~~~~~~~~ll~~SAT~~~r~~~-~~l-------------------------~~~~l~f~v~~~~~~lr~i~~~y 311 (1638)
T PRK14701 258 LNKEIEKIGNKIGCLIVASATGKAKGDR-VKL-------------------------YRELLGFEVGSGRSALRNIVDVY 311 (1638)
T ss_pred hhhhhhhcCCCccEEEEEecCCCchhHH-HHH-------------------------hhcCeEEEecCCCCCCCCcEEEE
Confidence 01123445 67799999853110 000 01122233333333455667776
Q ss_pred EEecccchhhHHHHHHHhCCCcEEEEecchhh---HHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEee
Q psy16310 1058 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISS---VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134 (1493)
Q Consensus 1058 ~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~---~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaT 1134 (1493)
+.+....+ ..+..++...+..+||||+|+.. |+.++..|...|+++..+||+ |..++++|++|+++|||||
T Consensus 312 i~~~~~~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT 385 (1638)
T PRK14701 312 LNPEKIIK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGV 385 (1638)
T ss_pred EECCHHHH-HHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEe
Confidence 66554444 45667777767789999999876 589999999999999999995 8899999999999999999
Q ss_pred ----hhhhccccCCC-ccEEEEecCCC---ChhHHHHHH-------------hccCCCCCCCeEEEEecCCCHHHHHHH
Q psy16310 1135 ----DVAARGLDIPG-IEHVIHYHVPR---TSEIYIHRS-------------GRTARANNEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1135 ----dv~~~GiDip~-v~~VI~~d~p~---s~~~yiqr~-------------GR~gR~g~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
++++||||+|+ |++|||||+|. +++.|.|.. ||+||.|..+.+++.+...+...++++
T Consensus 386 ~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 386 ATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred cCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHH
Confidence 59999999999 99999999999 888777765 999999988888755544444444444
No 116
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.5e-35 Score=364.28 Aligned_cols=317 Identities=17% Similarity=0.214 Sum_probs=223.3
Q ss_pred cHHHHhhHHHhhccCCcEEEEccCCCcchhH---------hhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHh
Q psy16310 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLA---------FGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEE 862 (1493)
Q Consensus 792 t~iQ~~~i~~~l~~~~dvlv~apTGsGKTla---------~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1493)
..+|.++++ .+..+++++++|+||||||.+ |++|.+..+..-
T Consensus 166 ~~iQ~qil~-~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~---------------------------- 216 (675)
T PHA02653 166 PDVQLKIFE-AWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI---------------------------- 216 (675)
T ss_pred HHHHHHHHH-HHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc----------------------------
Confidence 468999998 566889999999999999987 444444433110
Q ss_pred hhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC---CCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHH
Q psy16310 863 SANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY---TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939 (1493)
Q Consensus 863 ~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~---~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~ 939 (1493)
.....+.+++|++||||||.|+...+.....+ .+..+.+.+||... .+.....+..+|+|+|++..
T Consensus 217 --------~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-- 285 (675)
T PHA02653 217 --------DPNFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-- 285 (675)
T ss_pred --------ccccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--
Confidence 00123458999999999999999999876544 36778889999873 22222334679999998631
Q ss_pred HHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccc
Q psy16310 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 1019 (1493)
Q Consensus 940 ~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~ 1019 (1493)
...+.++++|||||||.+...+ +.+..++..+. +..+|+++||||++.++..+. ...
T Consensus 286 --------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~----~~~rq~ILmSATl~~dv~~l~-~~~-------- 342 (675)
T PHA02653 286 --------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHI----DKIRSLFLMTATLEDDRDRIK-EFF-------- 342 (675)
T ss_pred --------ccccccCCEEEccccccCccch--hHHHHHHHHhh----hhcCEEEEEccCCcHhHHHHH-HHh--------
Confidence 1246689999999999987765 34445554332 233699999999987654432 111
Q ss_pred cCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec----------ccchhhHHHHHHH---hCCCcEEEEecc
Q psy16310 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK----------HDEKDSYLYYFIL---QHPGRTLVFCNS 1086 (1493)
Q Consensus 1020 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~---~~~~~~IVF~~s 1086 (1493)
.++..+.+... ....+.+.++... ...+...+..+.. ..++.+||||++
T Consensus 343 ----------------~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg 404 (675)
T PHA02653 343 ----------------PNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVAS 404 (675)
T ss_pred ----------------cCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECc
Confidence 12222222211 1122222222111 1112122222211 235789999999
Q ss_pred hhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHH-hcCCCCeEEeehhhhccccCCCccEEEEec---CCC----
Q psy16310 1087 ISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRF-RDQNNSILLATDVAARGLDIPGIEHVIHYH---VPR---- 1156 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F-~~g~~~VLVaTdv~~~GiDip~v~~VI~~d---~p~---- 1156 (1493)
+..++.++..|... ++.+..+||+|++. ++++++| ++|+.+||||||+++||||||+|++||+++ .|.
T Consensus 405 ~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g 482 (675)
T PHA02653 405 VSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGG 482 (675)
T ss_pred HHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccC
Confidence 99999999999887 68999999999985 5677787 689999999999999999999999999998 665
Q ss_pred -----ChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHH
Q psy16310 1157 -----TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1157 -----s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
|.++|+||+|||||. ++|.|+.|+++.+...+.++
T Consensus 483 ~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 483 KEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred cccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 888999999999999 79999999988765444444
No 117
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=4e-35 Score=385.89 Aligned_cols=297 Identities=17% Similarity=0.229 Sum_probs=218.1
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHH
Q psy16310 778 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 857 (1493)
Q Consensus 778 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (1493)
.+.+.+.+.....|||+|..++|. +..|+|++++||||||||+ |++|+...+.
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~-il~G~d~vi~ApTGsGKT~-f~l~~~~~l~------------------------- 118 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKR-VLRGDSFAIIAPTGVGKTT-FGLAMSLFLA------------------------- 118 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHH-HhCCCeEEEECCCCCCHHH-HHHHHHHHHH-------------------------
Confidence 344555554555899999999995 5578999999999999997 7777765442
Q ss_pred HHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEE---EEEcCCCHHHHHH---Hhc-CCCcEE
Q psy16310 858 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA---CVVGGMSTEKQLR---ILN-KCPHIL 930 (1493)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~---~~~gg~~~~~~~~---~l~-~~~~Il 930 (1493)
..++++|||+|||+||.|+++.++.++...++.+. .++||.+...+.. .+. .+++|+
T Consensus 119 ----------------~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIl 182 (1171)
T TIGR01054 119 ----------------KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDIL 182 (1171)
T ss_pred ----------------hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 12467999999999999999999999887776543 4679888765433 333 358999
Q ss_pred EECcHHHHHHHHhCcCccccccceeEEEecccchhcc-----------CCChhH-HHHHHHHhcc---------------
Q psy16310 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHFPE-LKNILDRVTM--------------- 983 (1493)
Q Consensus 931 V~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-----------~~~~~~-l~~il~~l~~--------------- 983 (1493)
|+||++|.+.+..- . . +++++|+||||+|++ +||.++ +..++..+..
T Consensus 183 V~Tp~rL~~~~~~l----~-~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~ 256 (1171)
T TIGR01054 183 ITTTMFLSKNYDEL----G-P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLE 256 (1171)
T ss_pred EECHHHHHHHHHHh----c-C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 99999999887631 1 1 689999999999998 678764 5555443210
Q ss_pred --cCCCCCce--EEEEecc-cccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEE
Q psy16310 984 --TETSQPRQ--TFVFSAT-LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 1058 (1493)
Q Consensus 984 --~~~~~~~q--~ll~SAT-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1493)
...+..+| +++|||| .|..+...+. .....+.+........++.+.++
T Consensus 257 ~~~~~~~~~q~~li~~SAT~~p~~~~~~l~---------------------------r~ll~~~v~~~~~~~r~I~~~~~ 309 (1171)
T TIGR01054 257 LLEAIPGKKRGCLIVSSATGRPRGKRAKLF---------------------------RELLGFEVGGGSDTLRNVVDVYV 309 (1171)
T ss_pred HHHhhhhccCcEEEEEeCCCCccccHHHHc---------------------------ccccceEecCccccccceEEEEE
Confidence 01123344 6779999 5654432110 01111222222233455666655
Q ss_pred EecccchhhHHHHHHHhCCCcEEEEecch---hhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEe--
Q psy16310 1059 LCKHDEKDSYLYYFILQHPGRTLVFCNSI---SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA-- 1133 (1493)
Q Consensus 1059 ~~~~~~k~~~l~~~l~~~~~~~IVF~~s~---~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVa-- 1133 (1493)
.+.. +...+..++...+.++||||+|+ +.|+.++..|...|+++..+||+|++ .++++|++|+++||||
T Consensus 310 ~~~~--~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata 383 (1171)
T TIGR01054 310 EDED--LKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVA 383 (1171)
T ss_pred eccc--HHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEec
Confidence 4432 23456666666678899999999 99999999999999999999999973 6899999999999999
Q ss_pred --ehhhhccccCCC-ccEEEEecCCC
Q psy16310 1134 --TDVAARGLDIPG-IEHVIHYHVPR 1156 (1493)
Q Consensus 1134 --Tdv~~~GiDip~-v~~VI~~d~p~ 1156 (1493)
||+++||||+|+ |++|||||+|.
T Consensus 384 ~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 384 SYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred cccCcccccCCCCccccEEEEECCCC
Confidence 499999999999 89999999884
No 118
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.4e-34 Score=365.70 Aligned_cols=298 Identities=21% Similarity=0.250 Sum_probs=222.8
Q ss_pred HhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEE
Q psy16310 801 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880 (1493)
Q Consensus 801 ~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 880 (1493)
.++..+.++|++|+||||||.+|.+|+++... .+.+++
T Consensus 12 ~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------------------------------------------~~~~il 49 (819)
T TIGR01970 12 DALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------------------------------------------IGGKII 49 (819)
T ss_pred HHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------------------------------------------cCCeEE
Confidence 46667889999999999999999999986541 124799
Q ss_pred EEcccHHHHHHHHHHHH-HhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEe
Q psy16310 881 ILAPTRELAIQVQNHIL-DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 959 (1493)
Q Consensus 881 il~PTreLa~Q~~~~~~-~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVl 959 (1493)
|+.|||++|.|+++.+. .++...+..|+..+++.. ......+|+|+|||+|++.+... ..+.++++|||
T Consensus 50 vlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIi 119 (819)
T TIGR01970 50 MLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIF 119 (819)
T ss_pred EEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEE
Confidence 99999999999999885 455556677777666532 22345789999999999988753 24778999999
Q ss_pred cccc-hhccCCChhH-HHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCC
Q psy16310 960 DETD-RMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037 (1493)
Q Consensus 960 DEah-~ll~~~~~~~-l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1037 (1493)
||+| ++++.++.-. +..+...+ ..+.|+++||||++...... .. .+
T Consensus 120 DEaHER~L~~Dl~L~ll~~i~~~l-----r~dlqlIlmSATl~~~~l~~---~l------------------------~~ 167 (819)
T TIGR01970 120 DEFHERSLDADLGLALALDVQSSL-----REDLKILAMSATLDGERLSS---LL------------------------PD 167 (819)
T ss_pred eccchhhhccchHHHHHHHHHHhc-----CCCceEEEEeCCCCHHHHHH---Hc------------------------CC
Confidence 9999 5777665432 23344433 35789999999998543211 10 11
Q ss_pred CcEEeccccccccccceeeEEEecccchh-----hHHHHHHHhCCCcEEEEecchhhHHHHHHHHHh---cCCCcccccc
Q psy16310 1038 PKIVDLTEKIGITKTLTESKILCKHDEKD-----SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM---LKCSPLPLHA 1109 (1493)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~---~~~~~~~lhg 1109 (1493)
...+..... ...+...+..+...++. ..+...+....+.+||||+++..++.++..|.. .++.+..+||
T Consensus 168 ~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg 244 (819)
T TIGR01970 168 APVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYG 244 (819)
T ss_pred CcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 111221111 11123333333322221 223334445578999999999999999999987 3788999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC------------------ChhHHHHHHhccCCC
Q psy16310 1110 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR------------------TSEIYIHRSGRTARA 1171 (1493)
Q Consensus 1110 ~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~------------------s~~~yiqr~GR~gR~ 1171 (1493)
+|++.+|..+++.|++|..+||||||++++|||||+|++||++++|. |..+|+||+|||||.
T Consensus 245 ~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~ 324 (819)
T TIGR01970 245 ELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL 324 (819)
T ss_pred CCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999875 235699999999999
Q ss_pred CCCCeEEEEecCCCH
Q psy16310 1172 NNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1172 g~~G~~i~l~~~~e~ 1186 (1493)
++|.||.|++..+.
T Consensus 325 -~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 325 -EPGVCYRLWSEEQH 338 (819)
T ss_pred -CCCEEEEeCCHHHH
Confidence 79999999987654
No 119
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.7e-34 Score=379.36 Aligned_cols=327 Identities=20% Similarity=0.251 Sum_probs=228.7
Q ss_pred HHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHH
Q psy16310 164 RALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 242 (1493)
Q Consensus 164 ~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1493)
+.+.+ .|+ .|+++|..++|. +..|+|++++||||||||. |++|++..+.
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~-il~g~dv~i~ApTGsGKT~-f~l~~~~~l~--------------------------- 120 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKR-LLLGESFAIIAPTGVGKTT-FGLVMSLYLA--------------------------- 120 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHH-HHCCCcEEEEcCCCCCHHH-HHHHHHHHHH---------------------------
Confidence 34434 377 799999999995 5578999999999999996 5566554331
Q ss_pred HHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCH-----HHHHHHhc-CCCCEEEeC
Q psy16310 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST-----EKQLRILN-KCPHILVAT 316 (1493)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~-----~~~~~~l~-~~~~IiV~T 316 (1493)
..+.++|||+|||+||.|+++.+..++...++.+..++|+... ......+. +.++|+|+|
T Consensus 121 --------------~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~T 186 (1176)
T PRK09401 121 --------------KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTT 186 (1176)
T ss_pred --------------hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEEC
Confidence 1246799999999999999999999998888888888876542 22333344 458999999
Q ss_pred cHHHHHHHHcCCccccccccccEEEEecCchhhh-----------cCCh-hhHHHHHHhhccccCCCccccccccCCcch
Q psy16310 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHF-PELKNILDRVTMTETSQPRQTMIESGHFPE 384 (1493)
Q Consensus 317 P~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-----------~~~~-~~l~~il~~l~~~~~~~~~~~~~~~~~~~~ 384 (1493)
|++|.+++. .+ ...++++|||||||+|++ +||. +.+..++..++..... ......
T Consensus 187 p~rL~~~~~--~l---~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~--------~~~~~~ 253 (1176)
T PRK09401 187 SQFLSKNFD--EL---PKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY--------EEIYEK 253 (1176)
T ss_pred HHHHHHHHH--hc---cccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc--------chhhhH
Confidence 999998876 22 233689999999999996 5675 6788888777531100 000011
Q ss_pred hhhhhhhccccCCCCCceEEEEeeccchh-hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccc
Q psy16310 385 LKNILDRVTMTETSQPRQTFVFSATLTHS-LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKT 463 (1493)
Q Consensus 385 ~~~~~~~~~~~~~~~~~q~il~SATl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1493)
+..+.... ........|+++||||+++. +...+. .+++. +...
T Consensus 254 i~~l~~~i-~~~~~~~~q~ilfSAT~~~~~~~~~l~---------------------~~ll~------~~v~-------- 297 (1176)
T PRK09401 254 IRELEEKI-AELKDKKGVLVVSSATGRPRGNRVKLF---------------------RELLG------FEVG-------- 297 (1176)
T ss_pred HHHHHHhh-hhcccCCceEEEEeCCCCccchHHHHh---------------------hccce------EEec--------
Confidence 11111111 11112368999999999853 221100 00000 0000
Q ss_pred cchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC
Q psy16310 464 LTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 543 (1493)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 543 (1493)
.......++.+.++.+. .+...+..++...
T Consensus 298 ------------------------------------------------~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l 327 (1176)
T PRK09401 298 ------------------------------------------------SPVFYLRNIVDSYIVDE--DSVEKLVELVKRL 327 (1176)
T ss_pred ------------------------------------------------CcccccCCceEEEEEcc--cHHHHHHHHHHhc
Confidence 00000011112222222 4555667777666
Q ss_pred CCcEEEEecchhh---HHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEE----echhhccCCCCC-CcE
Q psy16310 544 PGRTLVFCNSISS---VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPG-IEH 615 (1493)
Q Consensus 544 ~~~~IIF~~s~~~---a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVa----Tdv~~rGlDip~-v~~ 615 (1493)
+.++||||+++.. |+.++..|...|+.+..+||+| .+.+++|++|+++|||| |++++||||+|+ |++
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~Iry 402 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRY 402 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeE
Confidence 7799999999888 9999999999999999999999 23469999999999999 699999999999 899
Q ss_pred EEEecCCC------ChHHHHHHHhccccC
Q psy16310 616 VIHYHVPR------TSEIYIHRSGRTARA 638 (1493)
Q Consensus 616 VI~yd~P~------s~~~yiQR~GRagR~ 638 (1493)
|||||+|. ....|.||.||+...
T Consensus 403 VI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 403 AIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 99999998 678899999998743
No 120
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1e-34 Score=360.16 Aligned_cols=321 Identities=18% Similarity=0.235 Sum_probs=214.7
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchhHH---------HHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHh
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLA---------FGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEE 245 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~---------~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1493)
..+|.++++ .+..++++|++|+||||||.+ |++|.+..+..-
T Consensus 166 ~~iQ~qil~-~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~---------------------------- 216 (675)
T PHA02653 166 PDVQLKIFE-AWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI---------------------------- 216 (675)
T ss_pred HHHHHHHHH-HHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc----------------------------
Confidence 467999998 566889999999999999997 444554433110
Q ss_pred hhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCC---CCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHH
Q psy16310 246 SANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY---TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322 (1493)
Q Consensus 246 ~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~---~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~ 322 (1493)
.......+++|++|||+||.|+...+....++ .++.+...+|+... .......++.+|+|+|++..
T Consensus 217 --------~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-- 285 (675)
T PHA02653 217 --------DPNFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-- 285 (675)
T ss_pred --------ccccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--
Confidence 00123457999999999999999998775544 46778899999873 22222233679999998631
Q ss_pred HHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCce
Q psy16310 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402 (1493)
Q Consensus 323 ~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 402 (1493)
...|.++++|||||||.+..++ +.+..++..+. ...+|
T Consensus 286 --------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~--------------------------------~~~rq 323 (675)
T PHA02653 286 --------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHI--------------------------------DKIRS 323 (675)
T ss_pred --------ccccccCCEEEccccccCccch--hHHHHHHHHhh--------------------------------hhcCE
Confidence 1236689999999999987654 34444443221 12258
Q ss_pred EEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHH
Q psy16310 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482 (1493)
Q Consensus 403 ~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1493)
+++||||++.++..+... +. .+..+.+.+. ....+.+.++....
T Consensus 324 ~ILmSATl~~dv~~l~~~-----------------------~~--~p~~I~I~gr--t~~pV~~~yi~~~~--------- 367 (675)
T PHA02653 324 LFLMTATLEDDRDRIKEF-----------------------FP--NPAFVHIPGG--TLFPISEVYVKNKY--------- 367 (675)
T ss_pred EEEEccCCcHhHHHHHHH-----------------------hc--CCcEEEeCCC--cCCCeEEEEeecCc---------
Confidence 999999998765443211 10 1111111000 00000000000000
Q ss_pred HHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH---hhCCCcEEEEecchhhHHH
Q psy16310 483 FILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSVKR 559 (1493)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~ 559 (1493)
. + .....+. ...+...+..+. ...++++||||+++.+++.
T Consensus 368 ----~-----------------~-------------~~~~~y~---~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~ 410 (675)
T PHA02653 368 ----N-----------------P-------------KNKRAYI---EEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEE 410 (675)
T ss_pred ----c-----------------c-------------ccchhhh---HHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHH
Confidence 0 0 0000000 001111111111 1235689999999999999
Q ss_pred HHHHHHhc--CCCccccccCCCHHHHHHHHHHH-hcCCCeEEEEechhhccCCCCCCcEEEEec---CCC---------C
Q psy16310 560 LTQLLTML--KCSPLPLHASMNQRQRLKNLDRF-RDQNNSILLATDVAARGLDIPGIEHVIHYH---VPR---------T 624 (1493)
Q Consensus 560 L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~F-r~g~~~VLVaTdv~~rGlDip~v~~VI~yd---~P~---------s 624 (1493)
+++.|... ++.+..+||+|++. .++++.| ++|+.+||||||+|+||||||+|++||++| .|. |
T Consensus 411 l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iS 488 (675)
T PHA02653 411 YKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFIS 488 (675)
T ss_pred HHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccC
Confidence 99999877 68999999999985 4667777 789999999999999999999999999999 665 8
Q ss_pred hHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 625 ~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
..+|+||+|||||. .+|.|+.|+++++.
T Consensus 489 kasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 489 KSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred HHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 88999999999999 69999999988764
No 121
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.4e-34 Score=321.89 Aligned_cols=347 Identities=22% Similarity=0.275 Sum_probs=239.6
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
+.-+|+.||......++. +|++++.|||-|||+++++-+...+..
T Consensus 12 ~~ie~R~YQ~~i~a~al~--~NtLvvlPTGLGKT~IA~~V~~~~l~~--------------------------------- 56 (542)
T COG1111 12 NTIEPRLYQLNIAAKALF--KNTLVVLPTGLGKTFIAAMVIANRLRW--------------------------------- 56 (542)
T ss_pred ccccHHHHHHHHHHHHhh--cCeEEEecCCccHHHHHHHHHHHHHHh---------------------------------
Confidence 445789999999877763 499999999999999999888876622
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
.++ ++|+|+||+.|+.|+++.|+++....+-.++.++|.....+....+.++ .|+|+||+.+.+.|..|..
T Consensus 57 -------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~-kVfvaTPQvveNDl~~Gri 127 (542)
T COG1111 57 -------FGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKK-KVFVATPQVVENDLKAGRI 127 (542)
T ss_pred -------cCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhC-CEEEeccHHHHhHHhcCcc
Confidence 233 7999999999999999999999877778899999998888766555543 8999999999999988876
Q ss_pred ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCccc--ccCCC-
Q psy16310 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK--VSKGD- 1023 (1493)
Q Consensus 947 ~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~--~~~~~- 1023 (1493)
+ +.++.++||||||+-....-+..+....... ..+..++++|||+..+.........+...... ....+
T Consensus 128 d---~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-----~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~ 199 (542)
T COG1111 128 D---LDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-----AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDP 199 (542)
T ss_pred C---hHHceEEEechhhhccCcchHHHHHHHHHHh-----ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCc
Confidence 5 4578999999999976543333333322111 35567999999988654332211100000000 00000
Q ss_pred -------------------chhHHH-----------------------------------H-hHhccCCC---cEEe---
Q psy16310 1024 -------------------PSIKRL-----------------------------------Q-DLLNIKSP---KIVD--- 1042 (1493)
Q Consensus 1024 -------------------~~~~~l-----------------------------------~-~~~~~~~~---~~~~--- 1042 (1493)
+.+..+ . ..+..... ....
T Consensus 200 DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~ 279 (542)
T COG1111 200 DVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLS 279 (542)
T ss_pred cHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHH
Confidence 000000 0 00000000 0000
Q ss_pred -------------ccccc---------------ccccc-------------------ceeeEEEecccchhhHHHHHHHh
Q psy16310 1043 -------------LTEKI---------------GITKT-------------------LTESKILCKHDEKDSYLYYFILQ 1075 (1493)
Q Consensus 1043 -------------~~~~~---------------~~~~~-------------------~~~~~~~~~~~~k~~~l~~~l~~ 1075 (1493)
+.+.. ..... +...........|...+..++..
T Consensus 280 ~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke 359 (542)
T COG1111 280 VLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKE 359 (542)
T ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHH
Confidence 00000 00000 00000011122334444444432
Q ss_pred C-----CCcEEEEecchhhHHHHHHHHHhcCCCcc-c--------cccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccc
Q psy16310 1076 H-----PGRTLVFCNSISSVKRLTQLLTMLKCSPL-P--------LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141 (1493)
Q Consensus 1076 ~-----~~~~IVF~~s~~~~~~l~~~L~~~~~~~~-~--------lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~Gi 1141 (1493)
. ..++|||++.+.+|+.++..|...+..+. . ...||+|.++..++++|+.|+++|||||+++++|+
T Consensus 360 ~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGL 439 (542)
T COG1111 360 QLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGL 439 (542)
T ss_pred HHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccC
Confidence 2 45899999999999999999999887774 2 23579999999999999999999999999999999
Q ss_pred cCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1142 Dip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
|||+|+.||.|++-.|..-++||.|||||. +.|..++|++.+..
T Consensus 440 DIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 440 DIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred CCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 999999999999999999999999999996 89999999998743
No 122
>KOG0952|consensus
Probab=100.00 E-value=2.2e-34 Score=345.93 Aligned_cols=374 Identities=21% Similarity=0.289 Sum_probs=277.5
Q ss_pred HHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 784 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 784 ~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
.-.+|+++..+|..++|.++..+.|+|+|||||||||.+|+|.|++.+-....
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~--------------------------- 156 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEE--------------------------- 156 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcc---------------------------
Confidence 34688999999999999999999999999999999999999999988854110
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHh
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~ 943 (1493)
.........+++||+|+++||..+++.|.+.+..+|+.|..++|++...+.. . ..++|||+||++ ||.+.+
T Consensus 157 -----~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i--~~tqiiVTTPEK-wDvvTR 227 (1230)
T KOG0952|consen 157 -----QGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-I--ADTQIIVTTPEK-WDVVTR 227 (1230)
T ss_pred -----ccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH-H--HhcCEEEecccc-eeeeee
Confidence 0113355678999999999999999999998888999999999998765544 2 246999999999 677754
Q ss_pred CcC-ccccccceeEEEecccchhccCCChhHHHHHHHHhccc--CCCCCceEEEEecccccchHhHHhhhccCcCccccc
Q psy16310 944 GHF-HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT--ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 1020 (1493)
Q Consensus 944 ~~~-~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~--~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~ 1020 (1493)
... ....+..+++|||||+| |+....++.++.|+.+.... .+-...+++++|||+|+-
T Consensus 228 k~~~d~~l~~~V~LviIDEVH-lLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~------------------ 288 (1230)
T KOG0952|consen 228 KSVGDSALFSLVRLVIIDEVH-LLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY------------------ 288 (1230)
T ss_pred eeccchhhhhheeeEEeeeeh-hhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH------------------
Confidence 432 23446689999999999 56667889999999887521 223467899999999953
Q ss_pred CCCchhHHHHhHhccCCCc-EEeccccccccccceeeEEEeccc---ch----hhHHHHHH---HhCCCcEEEEecchhh
Q psy16310 1021 KGDPSIKRLQDLLNIKSPK-IVDLTEKIGITKTLTESKILCKHD---EK----DSYLYYFI---LQHPGRTLVFCNSISS 1089 (1493)
Q Consensus 1021 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~k----~~~l~~~l---~~~~~~~IVF~~s~~~ 1089 (1493)
.++..++....+. ++.+... ..+-.+.+..+-+... .. ....+.-+ ...+.+++|||.++..
T Consensus 289 ------eDvA~fL~vn~~~glfsFd~~-yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~ 361 (1230)
T KOG0952|consen 289 ------EDVARFLRVNPYAGLFSFDQR-YRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNE 361 (1230)
T ss_pred ------HHHHHHhcCCCccceeeeccc-ccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChH
Confidence 2233333333211 1122111 1222333333333222 11 11111111 2347899999999999
Q ss_pred HHHHHHHHHhc-----------------------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCc
Q psy16310 1090 VKRLTQLLTML-----------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 1146 (1493)
Q Consensus 1090 ~~~l~~~L~~~-----------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v 1146 (1493)
+.+.|+.|.+. ......+|++|...+|..+.+.|..|.++||+||..+++|+++|+-
T Consensus 362 Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~ 441 (1230)
T KOG0952|consen 362 TIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAY 441 (1230)
T ss_pred HHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcce
Confidence 99999888543 1346679999999999999999999999999999999999999987
Q ss_pred cEEEE----ecCCC------ChhHHHHHHhccCCC--CCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHH
Q psy16310 1147 EHVIH----YHVPR------TSEIYIHRSGRTARA--NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSL 1214 (1493)
Q Consensus 1147 ~~VI~----~d~p~------s~~~yiqr~GR~gR~--g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 1214 (1493)
.++|- ||.-. ++.+-+|..|||||. +..|.++++.+.+.+..|..++.. ..|+++.+..-
T Consensus 442 aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~--------~~piES~~~~~ 513 (1230)
T KOG0952|consen 442 AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTG--------QNPIESQLLPC 513 (1230)
T ss_pred EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcC--------CChhHHHHHHH
Confidence 66662 55443 466789999999997 678999999999988999888765 45888888888
Q ss_pred HHHHHHHHHHHHH
Q psy16310 1215 IKKRIDLAKSIEY 1227 (1493)
Q Consensus 1215 i~~~~~~~~~~~~ 1227 (1493)
+.+.+++.-.+..
T Consensus 514 L~dnLnAEi~LgT 526 (1230)
T KOG0952|consen 514 LIDNLNAEISLGT 526 (1230)
T ss_pred HHHhhhhheeece
Confidence 7777766544433
No 123
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=325.60 Aligned_cols=340 Identities=22% Similarity=0.257 Sum_probs=266.9
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchh
Q psy16310 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 849 (1493)
Q Consensus 770 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 849 (1493)
..++.+++.+.+.|+..||+.+.|+|..|+..-|..|.|.+++++|+||||++.-++-+..++.
T Consensus 196 vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~---------------- 259 (830)
T COG1202 196 VDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS---------------- 259 (830)
T ss_pred ccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----------------
Confidence 5678999999999999999999999999999889999999999999999999998887777654
Q ss_pred HHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH----HhcC
Q psy16310 850 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR----ILNK 925 (1493)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~----~l~~ 925 (1493)
.+.+.|||+|..+||+|-++.|+.....+++.+.+-+|-........ ....
T Consensus 260 -------------------------~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~ 314 (830)
T COG1202 260 -------------------------GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSP 314 (830)
T ss_pred -------------------------CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCC
Confidence 34579999999999999999999988888999988887543333211 1123
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
.+||||||.+-+-.+|+.+ ..+.+++.+||||+|.+-+...++.+..++.++... -+..|++.+|||+.+...-
T Consensus 315 dADIIVGTYEGiD~lLRtg----~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l--~~~AQ~i~LSATVgNp~el 388 (830)
T COG1202 315 DADIIVGTYEGIDYLLRTG----KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYL--FPGAQFIYLSATVGNPEEL 388 (830)
T ss_pred CCcEEEeechhHHHHHHcC----CcccccceEEeeeeeeccchhcccchhhHHHHHHHh--CCCCeEEEEEeecCChHHH
Confidence 4699999999988888776 346789999999999887777777888888777543 3579999999999755321
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec-ccchhhHHHHHHH---------h
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFIL---------Q 1075 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~---------~ 1075 (1493)
. ..++. ..+.. ...+-.+....+.|. ..+|...+..+.. .
T Consensus 389 A------------------------~~l~a---~lV~y---~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg 438 (830)
T COG1202 389 A------------------------KKLGA---KLVLY---DERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKG 438 (830)
T ss_pred H------------------------HHhCC---eeEee---cCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccC
Confidence 1 11111 11111 112223333344555 3445444444432 2
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE---e
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH---Y 1152 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~---~ 1152 (1493)
+.|+||||++|+..|..|+..|...|+++.+||++|+..+|..+...|.++++.++|+|.+++.|+|+|.-.+|+- +
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaM 518 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAM 518 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHc
Confidence 3689999999999999999999999999999999999999999999999999999999999999999998665542 1
Q ss_pred cC-CCChhHHHHHHhccCCCCC--CCeEEEEecCCCH
Q psy16310 1153 HV-PRTSEIYIHRSGRTARANN--EGLTLVLIESDEI 1186 (1493)
Q Consensus 1153 d~-p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e~ 1186 (1493)
+. --++..|.||+|||||.+- .|.+++++.|...
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCChh
Confidence 11 2478999999999999964 7999999987643
No 124
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.6e-34 Score=348.38 Aligned_cols=347 Identities=18% Similarity=0.209 Sum_probs=235.5
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+|+|..++| ++..|+ |+.+.||+|||++|.+|++...+
T Consensus 100 lg~-~p~~VQ~~~~~-~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------------------------------- 142 (656)
T PRK12898 100 LGQ-RHFDVQLMGGL-ALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------------------------------- 142 (656)
T ss_pred hCC-CCChHHHHHHH-HHhCCC--eeeeeCCCCcHHHHHHHHHHHhh---------------------------------
Confidence 354 78999999999 455776 99999999999999999997653
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~ 944 (1493)
.+..++||+||++||.|.++.+..++.++++++++++||.+.. .+.+..++||+|||...| .|.|+.+
T Consensus 143 ---------~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~ 211 (656)
T PRK12898 143 ---------AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDR 211 (656)
T ss_pred ---------cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhcccc
Confidence 2457999999999999999999999999999999999998754 344456789999999988 4555433
Q ss_pred cCc----------------------cccccceeEEEecccchhccC-C-----------------ChhHHHHHHHHhccc
Q psy16310 945 HFH----------------------LTELYKINYLVIDETDRMIES-G-----------------HFPELKNILDRVTMT 984 (1493)
Q Consensus 945 ~~~----------------------~~~l~~l~~lVlDEah~ll~~-~-----------------~~~~l~~il~~l~~~ 984 (1493)
... -.....+.+.||||+|.++=+ . ++.....+...+...
T Consensus 212 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~ 291 (656)
T PRK12898 212 LALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEG 291 (656)
T ss_pred ccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCC
Confidence 211 011345789999999985211 1 111112222211100
Q ss_pred --------------------------------C-C------------------CC-------CceEEEE---------ec
Q psy16310 985 --------------------------------E-T------------------SQ-------PRQTFVF---------SA 997 (1493)
Q Consensus 985 --------------------------------~-~------------------~~-------~~q~ll~---------SA 997 (1493)
. . .. +-.+++. .-
T Consensus 292 ~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr 371 (656)
T PRK12898 292 EDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDR 371 (656)
T ss_pred CceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCC
Confidence 0 0 00 0011111 11
Q ss_pred ccccchHhHHhhhccCcCccc---------------------ccCCC-chhHHHHhHhccCCCcEEecccccccccccee
Q psy16310 998 TLTHSLKNSLNLKKGQSKSKK---------------------VSKGD-PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055 (1493)
Q Consensus 998 Tl~~~~~~~~~~~~~~~~~~~---------------------~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1055 (1493)
+++..+.+.+..+.+...... +.... .....+...+.+. .+.+...........+
T Consensus 372 ~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~---vv~IPt~kp~~r~~~~ 448 (656)
T PRK12898 372 SWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLP---VVRIPTNRPSQRRHLP 448 (656)
T ss_pred CcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCC---eEEeCCCCCccceecC
Confidence 223334444433222111000 00000 1111222222221 2222222222222344
Q ss_pred eEEEecccchhhHHHHHHHhC---CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEE
Q psy16310 1056 SKILCKHDEKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132 (1493)
Q Consensus 1056 ~~~~~~~~~k~~~l~~~l~~~---~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLV 1132 (1493)
.++.+...+|...+...+... +.++||||+|+..++.++..|...|+++..+||++. +|+..+..|+.+...|+|
T Consensus 449 ~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlV 526 (656)
T PRK12898 449 DEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITV 526 (656)
T ss_pred CEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEE
Confidence 456677778888888887653 678999999999999999999999999999999865 455555666666778999
Q ss_pred eehhhhccccCC---Ccc-----EEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1133 ATDVAARGLDIP---GIE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1133 aTdv~~~GiDip---~v~-----~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
|||+++||+||+ +|. |||+|++|.+...|+||+|||||.|.+|.+++|++..|
T Consensus 527 ATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 527 ATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 999999999999 776 99999999999999999999999999999999998755
No 125
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.2e-34 Score=363.47 Aligned_cols=306 Identities=21% Similarity=0.241 Sum_probs=216.1
Q ss_pred hhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEE
Q psy16310 184 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263 (1493)
Q Consensus 184 ~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL 263 (1493)
.++..++++|++|+||||||.+|.+++++... .+.+++
T Consensus 12 ~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------------------------------------------~~~~il 49 (819)
T TIGR01970 12 DALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------------------------------------------IGGKII 49 (819)
T ss_pred HHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------------------------------------------cCCeEE
Confidence 36677889999999999999999999986541 124799
Q ss_pred EEcccHHHHHHHHHHHH-HhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEE
Q psy16310 264 ILAPTRELAIQVQNHIL-DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 342 (1493)
Q Consensus 264 iL~PTreLa~Qi~~~~~-~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lVi 342 (1493)
|+.|||++|.|+++.+. .++...+..|+..+++.. ......+|+|+|||+|++++..+. .|+++++|||
T Consensus 50 vlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d~----~L~~v~~VIi 119 (819)
T TIGR01970 50 MLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDDP----ELDGVGALIF 119 (819)
T ss_pred EEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhCc----ccccCCEEEE
Confidence 99999999999999874 555555666666655432 223456999999999999987632 3678999999
Q ss_pred ecCch-hhhcCChhh-HHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 343 DETDR-MIESGHFPE-LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 343 DEAh~-ll~~~~~~~-l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
||||. +++..+.-. +..+...+ ....|+++||||++......
T Consensus 120 DEaHER~L~~Dl~L~ll~~i~~~l---------------------------------r~dlqlIlmSATl~~~~l~~--- 163 (819)
T TIGR01970 120 DEFHERSLDADLGLALALDVQSSL---------------------------------REDLKILAMSATLDGERLSS--- 163 (819)
T ss_pred eccchhhhccchHHHHHHHHHHhc---------------------------------CCCceEEEEeCCCCHHHHHH---
Confidence 99994 666554322 22222222 34579999999998543110
Q ss_pred hccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhh
Q psy16310 421 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500 (1493)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1493)
++. ....+...+.. ..+...+... ......
T Consensus 164 ----------------------~l~--~~~vI~~~gr~---~pVe~~y~~~---------------~~~~~~-------- 193 (819)
T TIGR01970 164 ----------------------LLP--DAPVVESEGRS---FPVEIRYLPL---------------RGDQRL-------- 193 (819)
T ss_pred ----------------------HcC--CCcEEEecCcc---eeeeeEEeec---------------chhhhH--------
Confidence 000 00000000000 0000000000 000000
Q ss_pred hccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHh---cCCCccccccC
Q psy16310 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM---LKCSPLPLHAS 577 (1493)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~---~~~~~~~lhg~ 577 (1493)
.......+...+....+.+||||+++.+++.++..|.. .++.+..+||+
T Consensus 194 ----------------------------~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~ 245 (819)
T TIGR01970 194 ----------------------------EDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGE 245 (819)
T ss_pred ----------------------------HHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCC
Confidence 00001233344445578999999999999999999986 37888999999
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC------------------hHHHHHHHhccccCC
Q psy16310 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT------------------SEIYIHRSGRTARAN 639 (1493)
Q Consensus 578 ~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s------------------~~~yiQR~GRagR~g 639 (1493)
|++.+|..+++.|++|..+||||||++++|||||+|++||++++|.. -.+|+||+|||||.
T Consensus 246 L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~- 324 (819)
T TIGR01970 246 LSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL- 324 (819)
T ss_pred CCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-
Confidence 99999999999999999999999999999999999999999999853 34699999999999
Q ss_pred CCCeEEEEecCCcchhh
Q psy16310 640 NEGLTVVLIESDEIPLK 656 (1493)
Q Consensus 640 ~~G~~i~l~~~~e~~~~ 656 (1493)
.+|.||.|+++.+...+
T Consensus 325 ~~G~cyrL~t~~~~~~l 341 (819)
T TIGR01970 325 EPGVCYRLWSEEQHQRL 341 (819)
T ss_pred CCCEEEEeCCHHHHHhh
Confidence 69999999998765443
No 126
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.8e-33 Score=345.09 Aligned_cols=352 Identities=16% Similarity=0.221 Sum_probs=241.0
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+++|..+++ ++..|+ |+.+.||+|||++|++|++...+.
T Consensus 75 ~g~-~p~~vQl~~~~-~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-------------------------------- 118 (790)
T PRK09200 75 LGM-RPYDVQLIGAL-VLHEGN--IAEMQTGEGKTLTATMPLYLNALE-------------------------------- 118 (790)
T ss_pred hCC-CCchHHHHhHH-HHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------------------------------
Confidence 476 89999999998 565664 999999999999999999855432
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~ 944 (1493)
+..++|++||++||.|.++.+..+..++++++++++||.+...+.+. ...+||++|||++| .|+|...
T Consensus 119 ----------G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~ 187 (790)
T PRK09200 119 ----------GKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDN 187 (790)
T ss_pred ----------CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhc
Confidence 34699999999999999999999999999999999999984333333 34689999999999 5666543
Q ss_pred cC---ccccccceeEEEecccchhccC-C---------------ChhHHHHHHHHhccc---------------------
Q psy16310 945 HF---HLTELYKINYLVIDETDRMIES-G---------------HFPELKNILDRVTMT--------------------- 984 (1493)
Q Consensus 945 ~~---~~~~l~~l~~lVlDEah~ll~~-~---------------~~~~l~~il~~l~~~--------------------- 984 (1493)
.. ....+..+.++|+||||.|+=+ . .+.....++..+...
T Consensus 188 ~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~ 267 (790)
T PRK09200 188 LADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEK 267 (790)
T ss_pred cccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHH
Confidence 21 1123567899999999986321 1 111122222221100
Q ss_pred --------C---C-------------------C-------CCceEEEEec---------ccccchHhHHhhhccCcCccc
Q psy16310 985 --------E---T-------------------S-------QPRQTFVFSA---------TLTHSLKNSLNLKKGQSKSKK 1018 (1493)
Q Consensus 985 --------~---~-------------------~-------~~~q~ll~SA---------Tl~~~~~~~~~~~~~~~~~~~ 1018 (1493)
. . . .+-.++++-. +++..+.+.+..+-+......
T Consensus 268 ~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e 347 (790)
T PRK09200 268 AESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEE 347 (790)
T ss_pred HHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCC
Confidence 0 0 0 0011222211 133334444433322111100
Q ss_pred -ccCCCch---hH-HH--------------HhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh---C
Q psy16310 1019 -VSKGDPS---IK-RL--------------QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---H 1076 (1493)
Q Consensus 1019 -~~~~~~~---~~-~l--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~ 1076 (1493)
.....-. +- .. .......+-.++.+.........-....+.+...+|...+...+.. .
T Consensus 348 ~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~ 427 (790)
T PRK09200 348 NRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHET 427 (790)
T ss_pred ceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhc
Confidence 0000000 00 00 0111222222333322221111112234556667788888877754 4
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccC---CCcc-----E
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI---PGIE-----H 1148 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDi---p~v~-----~ 1148 (1493)
+.++||||+|+..++.++..|...|+++..+||++.+.++..+...++.| .|+|||++++||+|| |+|. |
T Consensus 428 ~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~ 505 (790)
T PRK09200 428 GRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLA 505 (790)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcE
Confidence 77999999999999999999999999999999999999988888887766 799999999999999 7998 9
Q ss_pred EEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1149 VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
||+|++|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 506 VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 506 VIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred EEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 99999999999999999999999999999999987653
No 127
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=6.2e-34 Score=363.20 Aligned_cols=298 Identities=19% Similarity=0.252 Sum_probs=220.8
Q ss_pred HhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEE
Q psy16310 801 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880 (1493)
Q Consensus 801 ~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 880 (1493)
.++..+++++++||||||||++|.+|+++... ...+++
T Consensus 15 ~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------------------------------------------~~~~il 52 (812)
T PRK11664 15 TALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------------------------------------------INGKII 52 (812)
T ss_pred HHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------------------------------------------cCCeEE
Confidence 46667889999999999999999999886421 123799
Q ss_pred EEcccHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEe
Q psy16310 881 ILAPTRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 959 (1493)
Q Consensus 881 il~PTreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVl 959 (1493)
|++|||++|.|+++.+.. ++...+..++..+++.... ....+|+|+|||+|.+++.... .+.++++|||
T Consensus 53 vlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d~----~L~~v~~IIl 122 (812)
T PRK11664 53 MLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQRDP----ELSGVGLVIL 122 (812)
T ss_pred EECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc------CCCCcEEEEChhHHHHHHhhCC----CcCcCcEEEE
Confidence 999999999999999854 5666778888887765322 2345899999999999887532 4778999999
Q ss_pred cccch-hccCCC-hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCC
Q psy16310 960 DETDR-MIESGH-FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037 (1493)
Q Consensus 960 DEah~-ll~~~~-~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1037 (1493)
||+|. .++..+ ...+..++..+ +.+.|+++||||++...... . +.+
T Consensus 123 DEaHER~l~~Dl~L~ll~~i~~~l-----r~~lqlilmSATl~~~~l~~---~------------------------~~~ 170 (812)
T PRK11664 123 DEFHERSLQADLALALLLDVQQGL-----RDDLKLLIMSATLDNDRLQQ---L------------------------LPD 170 (812)
T ss_pred cCCCccccccchHHHHHHHHHHhC-----CccceEEEEecCCCHHHHHH---h------------------------cCC
Confidence 99996 444333 12233344433 36789999999998542111 1 011
Q ss_pred CcEEeccccccccccceeeEEEecccchhh-----HHHHHHHhCCCcEEEEecchhhHHHHHHHHHh---cCCCcccccc
Q psy16310 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDS-----YLYYFILQHPGRTLVFCNSISSVKRLTQLLTM---LKCSPLPLHA 1109 (1493)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~---~~~~~~~lhg 1109 (1493)
...+..... ...+.+.+.......+.. .+...+....+.+||||+++..++.++..|.. .++.+..+||
T Consensus 171 ~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg 247 (812)
T PRK11664 171 APVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYG 247 (812)
T ss_pred CCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeC
Confidence 111211111 112333333333333322 23344445578999999999999999999987 4778899999
Q ss_pred CCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC------------------ChhHHHHHHhccCCC
Q psy16310 1110 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR------------------TSEIYIHRSGRTARA 1171 (1493)
Q Consensus 1110 ~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~------------------s~~~yiqr~GR~gR~ 1171 (1493)
+|++.+|..++..|++|+.+|||||+++++|||||+|++||++++|+ |..+|+||+|||||.
T Consensus 248 ~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~ 327 (812)
T PRK11664 248 ALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL 327 (812)
T ss_pred CCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC
Confidence 99999999999999999999999999999999999999999987764 335899999999998
Q ss_pred CCCCeEEEEecCCCH
Q psy16310 1172 NNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1172 g~~G~~i~l~~~~e~ 1186 (1493)
..|.||.|+++.+.
T Consensus 328 -~~G~cyrL~t~~~~ 341 (812)
T PRK11664 328 -EPGICLHLYSKEQA 341 (812)
T ss_pred -CCcEEEEecCHHHH
Confidence 69999999986543
No 128
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=355.35 Aligned_cols=345 Identities=21% Similarity=0.247 Sum_probs=253.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHH
Q psy16310 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 853 (1493)
Q Consensus 774 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 853 (1493)
.+++.+.+.+...|+.+..|-|+.++...+.+++|+++|+|||||||+++++.|+..+...
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------------------- 75 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG------------------- 75 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------------------
Confidence 4778888888889998888888888877777789999999999999999999999887542
Q ss_pred HHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEEC
Q psy16310 854 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933 (1493)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~T 933 (1493)
+.+++||||+++||.|.++.|+ ....+|++|...+|+....... + .+++|+|+|
T Consensus 76 ----------------------~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~--l-~~~~ViVtT 129 (766)
T COG1204 76 ----------------------GGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDER--L-ARYDVIVTT 129 (766)
T ss_pred ----------------------CCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchhh--h-ccCCEEEEc
Confidence 3469999999999999999999 4457889999999998755522 1 357999999
Q ss_pred cHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch--HhHHhhhc
Q psy16310 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL--KNSLNLKK 1011 (1493)
Q Consensus 934 P~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~--~~~~~~~~ 1011 (1493)
|+++-.++++... .+..+++||+||+|.+.+...++.++.|+.++... ....|++++|||+|+.. ..++....
T Consensus 130 ~EK~Dsl~R~~~~---~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~--~~~~rivgLSATlpN~~evA~wL~a~~ 204 (766)
T COG1204 130 PEKLDSLTRKRPS---WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRL--NELIRIVGLSATLPNAEEVADWLNAKL 204 (766)
T ss_pred hHHhhHhhhcCcc---hhhcccEEEEeeeeecCCcccCceehhHHHHHHhh--CcceEEEEEeeecCCHHHHHHHhCCcc
Confidence 9998777765543 46689999999999887777889999999887543 23479999999999643 22321110
Q ss_pred cCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHH
Q psy16310 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 1091 (1493)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~ 1091 (1493)
. .......+ + .-..+....+........ .......+....+.......++++||||+|++.+.
T Consensus 205 ~----~~~~rp~~----l----~~~v~~~~~~~~~~~~~k-----~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~ 267 (766)
T COG1204 205 V----ESDWRPVP----L----RRGVPYVGAFLGADGKKK-----TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAE 267 (766)
T ss_pred c----ccCCCCcc----c----ccCCccceEEEEecCccc-----cccccchHHHHHHHHHHHhcCCeEEEEEecCchHH
Confidence 0 00000000 0 000000000000000000 00011122333334444566899999999999999
Q ss_pred HHHHHHHhc-------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEee
Q psy16310 1092 RLTQLLTML-------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134 (1493)
Q Consensus 1092 ~l~~~L~~~-------------------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaT 1134 (1493)
..+..|... -.++..||++|+..+|..+.+.|+.|.++|||||
T Consensus 268 ~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~T 347 (766)
T COG1204 268 KTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVST 347 (766)
T ss_pred HHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEec
Confidence 998888621 1346779999999999999999999999999999
Q ss_pred hhhhccccCCCccEEE----Eec-----CCCChhHHHHHHhccCCCCC--CCeEEEEecCCC
Q psy16310 1135 DVAARGLDIPGIEHVI----HYH-----VPRTSEIYIHRSGRTARANN--EGLTLVLIESDE 1185 (1493)
Q Consensus 1135 dv~~~GiDip~v~~VI----~~d-----~p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e 1185 (1493)
+++++|+|+|.-.+|| .|+ .+-+.-+|+|++|||||.|- .|.++++.+..+
T Consensus 348 pTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~ 409 (766)
T COG1204 348 PTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHD 409 (766)
T ss_pred hHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCcc
Confidence 9999999999988888 367 56678899999999999974 688888884443
No 129
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=9e-34 Score=356.41 Aligned_cols=347 Identities=21% Similarity=0.241 Sum_probs=254.1
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
.+++.+...+...|+..+++-|+.++...+.+++|+|+|+|||||||+++.+.+++.+.+
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~-------------------- 74 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE-------------------- 74 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------------------
Confidence 477888888888999999999999998888888999999999999999999999988853
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeC
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~T 316 (1493)
.+.++|++||+++||.|.++.|.. ...+|++|...+|+......+ ..+++|||+|
T Consensus 75 ---------------------~~~k~vYivPlkALa~Ek~~~~~~-~~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT 129 (766)
T COG1204 75 ---------------------GGGKVVYIVPLKALAEEKYEEFSR-LEELGIRVGISTGDYDLDDER---LARYDVIVTT 129 (766)
T ss_pred ---------------------cCCcEEEEeChHHHHHHHHHHhhh-HHhcCCEEEEecCCcccchhh---hccCCEEEEc
Confidence 145799999999999999999994 345799999999998765532 2457999999
Q ss_pred cHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccC
Q psy16310 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396 (1493)
Q Consensus 317 P~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1493)
|+++-.++.+... .+..+++|||||+|.+.+..+++.++.|+.++...
T Consensus 130 ~EK~Dsl~R~~~~---~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~----------------------------- 177 (766)
T COG1204 130 PEKLDSLTRKRPS---WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRL----------------------------- 177 (766)
T ss_pred hHHhhHhhhcCcc---hhhcccEEEEeeeeecCCcccCceehhHHHHHHhh-----------------------------
Confidence 9998777765544 45589999999999887777999999999877543
Q ss_pred CCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCc
Q psy16310 397 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 476 (1493)
Q Consensus 397 ~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1493)
....|++++|||+|+.. .+.+|++...... .+...-..........+...
T Consensus 178 -~~~~rivgLSATlpN~~------------------------evA~wL~a~~~~~-~~rp~~l~~~v~~~~~~~~~---- 227 (766)
T COG1204 178 -NELIRIVGLSATLPNAE------------------------EVADWLNAKLVES-DWRPVPLRRGVPYVGAFLGA---- 227 (766)
T ss_pred -CcceEEEEEeeecCCHH------------------------HHHHHhCCccccc-CCCCcccccCCccceEEEEe----
Confidence 33479999999998642 3334443221100 00000000000000000000
Q ss_pred chhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhh
Q psy16310 477 DSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556 (1493)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~ 556 (1493)
.. .........+.....+.......++++||||+||..
T Consensus 228 -------------------------------------~~-----~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~ 265 (766)
T COG1204 228 -------------------------------------DG-----KKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKE 265 (766)
T ss_pred -------------------------------------cC-----ccccccccchHHHHHHHHHHHhcCCeEEEEEecCch
Confidence 00 000000011112222223334457899999999999
Q ss_pred HHHHHHHHHh-------------------------------------cCCCccccccCCCHHHHHHHHHHHhcCCCeEEE
Q psy16310 557 VKRLTQLLTM-------------------------------------LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599 (1493)
Q Consensus 557 a~~L~~~L~~-------------------------------------~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLV 599 (1493)
+...++.|.. ...+++.||++|+..+|.-+.+.|+.|.++|||
T Consensus 266 a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv 345 (766)
T COG1204 266 AEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLV 345 (766)
T ss_pred HHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEE
Confidence 9998888852 024567799999999999999999999999999
Q ss_pred EechhhccCCCCCCcEEE----Eec-----CCCChHHHHHHHhccccCCCC--CeEEEEecCCc
Q psy16310 600 ATDVAARGLDIPGIEHVI----HYH-----VPRTSEIYIHRSGRTARANNE--GLTVVLIESDE 652 (1493)
Q Consensus 600 aTdv~~rGlDip~v~~VI----~yd-----~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~e 652 (1493)
||+++++|+|+|.-.+|| .|| .+.++.+|+|+.|||||.|-. |.++++.+..+
T Consensus 346 ~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~ 409 (766)
T COG1204 346 STPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHD 409 (766)
T ss_pred echHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCcc
Confidence 999999999999877777 588 678899999999999998765 78888874433
No 130
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=8.5e-34 Score=351.03 Aligned_cols=324 Identities=17% Similarity=0.188 Sum_probs=221.6
Q ss_pred CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 788 ~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
...|+++|.++++.++ .+.+.++++|||+|||+++...+ ..+..
T Consensus 112 ~~~~r~~Q~~av~~~l-~~~~~il~apTGsGKT~i~~~l~-~~~~~---------------------------------- 155 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL-KNNRRLLNLPTSAGKSLIQYLLS-RYYLE---------------------------------- 155 (501)
T ss_pred cCCCCHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHH-HHHHh----------------------------------
Confidence 4689999999998666 56789999999999999865432 22111
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCc
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~ 947 (1493)
....++||||||++|+.|+.+.+..++......+..+.||.... ...+|+|+||+++.+...
T Consensus 156 ------~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----- 217 (501)
T PHA02558 156 ------NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----- 217 (501)
T ss_pred ------cCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh-----
Confidence 12237999999999999999999998755555666677765432 346899999999875432
Q ss_pred cccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhh--hccCcCcccccCCCch
Q psy16310 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL--KKGQSKSKKVSKGDPS 1025 (1493)
Q Consensus 948 ~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~--~~~~~~~~~~~~~~~~ 1025 (1493)
..+.++++||+||||++... .+..++..+ +..+++++||||+.+........ ..+... .. ..
T Consensus 218 -~~~~~~~~iIvDEaH~~~~~----~~~~il~~~-----~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~-~~-----v~ 281 (501)
T PHA02558 218 -EWFDQFGMVIVDECHLFTGK----SLTSIITKL-----DNCKFKFGLTGSLRDGKANILQYVGLFGDIF-KP-----VT 281 (501)
T ss_pred -hhccccCEEEEEchhcccch----hHHHHHHhh-----hccceEEEEeccCCCccccHHHHHHhhCCce-EE-----ec
Confidence 13567899999999998763 456666655 24578999999997543221110 111000 00 01
Q ss_pred hHHHHhHhccCCCcEEeccccccc--cccc-----ee-eEEEecccchhhHHHHHH---HhCCCcEEEEecchhhHHHHH
Q psy16310 1026 IKRLQDLLNIKSPKIVDLTEKIGI--TKTL-----TE-SKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLT 1094 (1493)
Q Consensus 1026 ~~~l~~~~~~~~~~~~~~~~~~~~--~~~~-----~~-~~~~~~~~~k~~~l~~~l---~~~~~~~IVF~~s~~~~~~l~ 1094 (1493)
...+...-.+..+.+..+...... .... .. ....+....+...+...+ ...+.+++|||+++++++.|+
T Consensus 282 ~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~ 361 (501)
T PHA02558 282 TSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLY 361 (501)
T ss_pred HHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHH
Confidence 111111111111111110000000 0000 00 001122223333333322 334678999999999999999
Q ss_pred HHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEee-hhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1095 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT-DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1095 ~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaT-dv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
+.|...|.++..+||+|++.+|..+++.|+.|+..||||| +++++|+|+|++++||++++|.+...|+||+||++|.+.
T Consensus 362 ~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 362 EMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHG 441 (501)
T ss_pred HHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCC
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999999976
Q ss_pred CCeEEEEe
Q psy16310 1174 EGLTLVLI 1181 (1493)
Q Consensus 1174 ~G~~i~l~ 1181 (1493)
.+...+++
T Consensus 442 ~K~~~~i~ 449 (501)
T PHA02558 442 SKSIATVW 449 (501)
T ss_pred CCceEEEE
Confidence 55444443
No 131
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=319.02 Aligned_cols=341 Identities=22% Similarity=0.254 Sum_probs=260.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
...++.|++.+.+.|+..|++.+.|+|..++..-|..|.|++|+++|+||||++.-|.-+..++.
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------------- 259 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------------- 259 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh---------------
Confidence 45689999999999999999999999999999999999999999999999999988887766643
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHH----HHhc
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL----RILN 307 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~----~~l~ 307 (1493)
.+.+.|||+|..+||+|-++.|.+-...+++.+.+-+|........ ....
T Consensus 260 --------------------------~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~ 313 (830)
T COG1202 260 --------------------------GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTS 313 (830)
T ss_pred --------------------------CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCC
Confidence 4567999999999999999999988888999999998875443332 1122
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
..+||||+|.+.+-.+|..+ ..+.++..+||||.|.+-+..+++.+..++.++...
T Consensus 314 ~dADIIVGTYEGiD~lLRtg----~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l-------------------- 369 (830)
T COG1202 314 PDADIIVGTYEGIDYLLRTG----KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYL-------------------- 369 (830)
T ss_pred CCCcEEEeechhHHHHHHcC----CcccccceEEeeeeeeccchhcccchhhHHHHHHHh--------------------
Confidence 34799999999987777765 235689999999999887778888888888887543
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
.+..|+|.+|||+.+...- ...++. ..+.+ -..+..+..+
T Consensus 370 ----------~~~AQ~i~LSATVgNp~el------------------------A~~l~a---~lV~y---~~RPVplErH 409 (830)
T COG1202 370 ----------FPGAQFIYLSATVGNPEEL------------------------AKKLGA---KLVLY---DERPVPLERH 409 (830)
T ss_pred ----------CCCCeEEEEEeecCChHHH------------------------HHHhCC---eeEee---cCCCCChhHe
Confidence 3457999999999654221 111100 00000 0000111111
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH-------
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI------- 540 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l------- 540 (1493)
.+++.. ...|...+..+.
T Consensus 410 lvf~~~-------------------------------------------------------e~eK~~ii~~L~k~E~~~~ 434 (830)
T COG1202 410 LVFARN-------------------------------------------------------ESEKWDIIARLVKREFSTE 434 (830)
T ss_pred eeeecC-------------------------------------------------------chHHHHHHHHHHHHHHhhh
Confidence 111111 122222222222
Q ss_pred --hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 541 --LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 541 --~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
..+.|++|||++||..|+.|+..|...|+.+.++|++|+..+|..+...|..+++.++|+|..++-|+|+|.-.+|+-
T Consensus 435 sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFE 514 (830)
T COG1202 435 SSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFE 514 (830)
T ss_pred hccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHH
Confidence 123589999999999999999999999999999999999999999999999999999999999999999997554431
Q ss_pred ---ecC-CCChHHHHHHHhccccCCC--CCeEEEEecCCc
Q psy16310 619 ---YHV-PRTSEIYIHRSGRTARANN--EGLTVVLIESDE 652 (1493)
Q Consensus 619 ---yd~-P~s~~~yiQR~GRagR~g~--~G~~i~l~~~~e 652 (1493)
.+. =.|+.+|.|+.|||||.+- .|.+|+++.+.-
T Consensus 515 sLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 515 SLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred HHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 111 1579999999999999765 499999998754
No 132
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.2e-33 Score=360.54 Aligned_cols=305 Identities=19% Similarity=0.243 Sum_probs=213.7
Q ss_pred hhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEE
Q psy16310 184 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263 (1493)
Q Consensus 184 ~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL 263 (1493)
.++.+++++|++||||||||.+|.+++++.. ....+++
T Consensus 15 ~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~------------------------------------------~~~~~il 52 (812)
T PRK11664 15 TALKTAPQVLLKAPTGAGKSTWLPLQLLQHG------------------------------------------GINGKII 52 (812)
T ss_pred HHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC------------------------------------------CcCCeEE
Confidence 4667788999999999999999999988532 1123799
Q ss_pred EEcccHHHHHHHHHHHH-HhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEE
Q psy16310 264 ILAPTRELAIQVQNHIL-DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 342 (1493)
Q Consensus 264 iL~PTreLa~Qi~~~~~-~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lVi 342 (1493)
|++|||++|.|+++.+. .++...+..++..+++.... ....+|+|+|||+|++++..+. .|+++++|||
T Consensus 53 vlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d~----~L~~v~~IIl 122 (812)
T PRK11664 53 MLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQRDP----ELSGVGLVIL 122 (812)
T ss_pred EECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc------CCCCcEEEEChhHHHHHHhhCC----CcCcCcEEEE
Confidence 99999999999999884 45566677888777764321 2345899999999999987532 3678999999
Q ss_pred ecCch-hhhcCCh-hhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 343 DETDR-MIESGHF-PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 343 DEAh~-ll~~~~~-~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
||||. .++..+. ..+..++..+ ....|+++||||++..... .
T Consensus 123 DEaHER~l~~Dl~L~ll~~i~~~l---------------------------------r~~lqlilmSATl~~~~l~--~- 166 (812)
T PRK11664 123 DEFHERSLQADLALALLLDVQQGL---------------------------------RDDLKLLIMSATLDNDRLQ--Q- 166 (812)
T ss_pred cCCCccccccchHHHHHHHHHHhC---------------------------------CccceEEEEecCCCHHHHH--H-
Confidence 99997 3332221 1122222222 3457999999999754211 0
Q ss_pred hccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhh
Q psy16310 421 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500 (1493)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1493)
++. ....+...+. ...+...+.... ......
T Consensus 167 ----------------------~~~--~~~~I~~~gr---~~pV~~~y~~~~---------------~~~~~~------- 197 (812)
T PRK11664 167 ----------------------LLP--DAPVIVSEGR---SFPVERRYQPLP---------------AHQRFD------- 197 (812)
T ss_pred ----------------------hcC--CCCEEEecCc---cccceEEeccCc---------------hhhhHH-------
Confidence 000 0000000000 000000000000 000000
Q ss_pred hccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHh---cCCCccccccC
Q psy16310 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM---LKCSPLPLHAS 577 (1493)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~---~~~~~~~lhg~ 577 (1493)
..-...+...+....+.+||||+++.+++.+++.|.. .++.+..+||+
T Consensus 198 -----------------------------~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~ 248 (812)
T PRK11664 198 -----------------------------EAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGA 248 (812)
T ss_pred -----------------------------HHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCC
Confidence 0001123344445578999999999999999999986 47788999999
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC------------------hHHHHHHHhccccCC
Q psy16310 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT------------------SEIYIHRSGRTARAN 639 (1493)
Q Consensus 578 ~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s------------------~~~yiQR~GRagR~g 639 (1493)
|++.+|..++..|++|+.+||||||++++|||||+|++||++++|.. -.+|+||+|||||.
T Consensus 249 l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~- 327 (812)
T PRK11664 249 LSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL- 327 (812)
T ss_pred CCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-
Confidence 99999999999999999999999999999999999999999887643 35799999999998
Q ss_pred CCCeEEEEecCCcchh
Q psy16310 640 NEGLTVVLIESDEIPL 655 (1493)
Q Consensus 640 ~~G~~i~l~~~~e~~~ 655 (1493)
.+|.||.||++.+...
T Consensus 328 ~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 328 EPGICLHLYSKEQAER 343 (812)
T ss_pred CCcEEEEecCHHHHhh
Confidence 5999999999876543
No 133
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2e-33 Score=341.81 Aligned_cols=406 Identities=18% Similarity=0.173 Sum_probs=242.6
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.|. .|+++|..++| +++.|+ |+.+.||+|||++|++|++....
T Consensus 100 lg~-~p~~VQ~~~~~-~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------------------------------- 142 (656)
T PRK12898 100 LGQ-RHFDVQLMGGL-ALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------------------------------- 142 (656)
T ss_pred hCC-CCChHHHHHHH-HHhCCC--eeeeeCCCCcHHHHHHHHHHHhh---------------------------------
Confidence 355 69999999998 566776 99999999999999999986542
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
.++.|+||+||++||.|.+.++..+..++++++++++|+++.. ......++||+|+|..-| .|.|...
T Consensus 143 ---------~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~ 211 (656)
T PRK12898 143 ---------AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDR 211 (656)
T ss_pred ---------cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhcccc
Confidence 3457999999999999999999999999999999999998754 334445789999999887 4555432
Q ss_pred Ccc----------------------ccccccccEEEEecCchhhhc-CChh-----------------hHHHHHHhhccc
Q psy16310 328 HFH----------------------LTELYKINYLVIDETDRMIES-GHFP-----------------ELKNILDRVTMT 367 (1493)
Q Consensus 328 ~~~----------------------~~~l~~i~~lViDEAh~ll~~-~~~~-----------------~l~~il~~l~~~ 367 (1493)
... ......+.+.||||||.+|=+ ...+ +...+...+...
T Consensus 212 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~ 291 (656)
T PRK12898 212 LALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEG 291 (656)
T ss_pred ccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCC
Confidence 110 011345789999999997622 1111 111111111100
Q ss_pred cCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhh---
Q psy16310 368 ETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL--- 444 (1493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 444 (1493)
.+ +. .....+.+.++..-...+..++.... . ...........+...+
T Consensus 292 ------------~~----------y~---~d~~~~~v~lt~~g~~~~e~~~~~l~---~--~~~~~~~~~~~i~~Al~A~ 341 (656)
T PRK12898 292 ------------ED----------YT---IDAAEKRIELTEAGRARIAELAESLP---P--AWRGAVRREELVRQALSAL 341 (656)
T ss_pred ------------Cc----------eE---EECCCCeEEEcHHHHHHHHHHhCcch---h--hcccchHHHHHHHHHHHHH
Confidence 00 00 01122333333222122222211100 0 0000000000000000
Q ss_pred ---hccCCcc------cc---hhhhhccccccc----hh------hhhhccCC---cchhh----HHHHhcCCCcchhhH
Q psy16310 445 ---NIKSPKI------VD---LTEKIGITKTLT----ES------KILCKHDE---KDSYL----YYFILQHPGRTLCEE 495 (1493)
Q Consensus 445 ---~~~~~~~------~~---~~~~~~~~~~~~----~~------~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~ 495 (1493)
.....++ .- .++.......+. +. ..+..... .-.+. .|.-...-..+....
T Consensus 342 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~ 421 (656)
T PRK12898 342 HLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREV 421 (656)
T ss_pred HHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHH
Confidence 0000000 00 000000000000 00 00000000 00011 111111112222222
Q ss_pred HHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC---CCcEEEEecchhhHHHHHHHHHhcCCCcc
Q psy16310 496 IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPL 572 (1493)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~IIF~~s~~~a~~L~~~L~~~~~~~~ 572 (1493)
...+...+.-.+..+..............+.+....|...+...+... +.++||||+|+..++.++..|...|+.+.
T Consensus 422 ~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~ 501 (656)
T PRK12898 422 AGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQ 501 (656)
T ss_pred HHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEE
Confidence 233333333223222222222222333456666677888888888653 57899999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCC---CCc-----EEEEecCCCChHHHHHHHhccccCCCCCeE
Q psy16310 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP---GIE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLT 644 (1493)
Q Consensus 573 ~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip---~v~-----~VI~yd~P~s~~~yiQR~GRagR~g~~G~~ 644 (1493)
.+||.+. +|...+..|+.+...|+||||+++||+||+ +|. +||+||+|.|...|+||+|||||.|.+|.|
T Consensus 502 ~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s 579 (656)
T PRK12898 502 VLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY 579 (656)
T ss_pred EeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE
Confidence 9999865 555566667777778999999999999999 776 999999999999999999999999999999
Q ss_pred EEEecCCcch
Q psy16310 645 VVLIESDEIP 654 (1493)
Q Consensus 645 i~l~~~~e~~ 654 (1493)
++|++.+|.-
T Consensus 580 ~~~is~eD~l 589 (656)
T PRK12898 580 EAILSLEDDL 589 (656)
T ss_pred EEEechhHHH
Confidence 9999986633
No 134
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=8e-34 Score=379.57 Aligned_cols=352 Identities=15% Similarity=0.134 Sum_probs=238.3
Q ss_pred HHHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHH
Q psy16310 161 TIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 239 (1493)
Q Consensus 161 ~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1493)
.+.+.+.+ .|| .|+++|.+++|. +..|+|++++||||||||++++++++...
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~-il~G~d~li~APTGsGKTl~~~~~al~~~------------------------- 119 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKR-ILRGKSFSIVAPTGMGKSTFGAFIALFLA------------------------- 119 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHH-HHcCCCEEEEEcCCCCHHHHHHHHHHHHH-------------------------
Confidence 34555655 799 699999999995 55789999999999999996666554321
Q ss_pred HHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC--CeEEEEEEcCCCHHHHHH---HhcC-CCCEE
Q psy16310 240 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT--PVKVACVVGGMSTEKQLR---ILNK-CPHIL 313 (1493)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~--~i~v~~~~G~~~~~~~~~---~l~~-~~~Ii 313 (1493)
..+.++|||+||++||.|+++.+..++... ++.+..++|+.+...+.. .+.. .++|+
T Consensus 120 -----------------~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dIL 182 (1638)
T PRK14701 120 -----------------LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDIL 182 (1638)
T ss_pred -----------------hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEE
Confidence 134579999999999999999999987764 467788899988776533 3433 48999
Q ss_pred EeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-----------cCChhhHHH-HHHhhccccCCCccccccccCC
Q psy16310 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHFPELKN-ILDRVTMTETSQPRQTMIESGH 381 (1493)
Q Consensus 314 V~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-----------~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~ 381 (1493)
|+||++|.+.+... . ..++++|||||||+|++ ++|.+.+.. +++.+......... ..
T Consensus 183 V~TPgrL~~~~~~l----~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~------~~ 251 (1638)
T PRK14701 183 VTTAQFLARNFPEM----K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIE------DA 251 (1638)
T ss_pred EECCchhHHhHHHH----h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccc------hh
Confidence 99999998876531 1 14689999999999987 477777654 22222110000000 00
Q ss_pred cchhhhhhhhccccCCCCCce-EEEEeeccchh--hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhh
Q psy16310 382 FPELKNILDRVTMTETSQPRQ-TFVFSATLTHS--LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458 (1493)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~q-~il~SATl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1493)
...+..+.... ...+...| ++++|||+++. ...+++ + +..+..
T Consensus 252 ~~~~~~l~~~~--~~~~~~~~~ll~~SAT~~~r~~~~~l~~----------------------~------~l~f~v---- 297 (1638)
T PRK14701 252 MEKREILNKEI--EKIGNKIGCLIVASATGKAKGDRVKLYR----------------------E------LLGFEV---- 297 (1638)
T ss_pred hhhhhhhhhhh--hhcCCCccEEEEEecCCCchhHHHHHhh----------------------c------CeEEEe----
Confidence 00011111111 11133344 67899999852 111110 0 000000
Q ss_pred ccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHH
Q psy16310 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 538 (1493)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 538 (1493)
.........+.+.++.+....+ ..+..
T Consensus 298 ----------------------------------------------------~~~~~~lr~i~~~yi~~~~~~k-~~L~~ 324 (1638)
T PRK14701 298 ----------------------------------------------------GSGRSALRNIVDVYLNPEKIIK-EHVRE 324 (1638)
T ss_pred ----------------------------------------------------cCCCCCCCCcEEEEEECCHHHH-HHHHH
Confidence 0000000111112222222222 34556
Q ss_pred HHhhCCCcEEEEecchhh---HHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEe----chhhccCCCC
Q psy16310 539 FILQHPGRTLVFCNSISS---VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT----DVAARGLDIP 611 (1493)
Q Consensus 539 ~l~~~~~~~IIF~~s~~~---a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaT----dv~~rGlDip 611 (1493)
++...+.++||||+++.. |+.++..|...|+.+..+||+ |..+++.|++|+++||||| ++++||||+|
T Consensus 325 ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP 399 (1638)
T PRK14701 325 LLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLP 399 (1638)
T ss_pred HHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccC
Confidence 666667789999999886 489999999999999999995 8899999999999999999 5999999999
Q ss_pred C-CcEEEEecCCC---ChHHHHHHH-------------hccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 612 G-IEHVIHYHVPR---TSEIYIHRS-------------GRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 612 ~-v~~VI~yd~P~---s~~~yiQR~-------------GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
+ |++|||||+|. ++..|.|.. ||+||.|.++.+++.+...++.....+
T Consensus 400 ~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 400 ERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred CccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHH
Confidence 9 99999999999 888777765 999999998888866665555554444
No 135
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.2e-33 Score=348.88 Aligned_cols=406 Identities=15% Similarity=0.193 Sum_probs=246.9
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.|. .|+++|..+++ ++..|+ |+.+.||+|||++|++|++...+
T Consensus 75 ~g~-~p~~vQl~~~~-~l~~G~--Iaem~TGeGKTL~a~lp~~l~al--------------------------------- 117 (790)
T PRK09200 75 LGM-RPYDVQLIGAL-VLHEGN--IAEMQTGEGKTLTATMPLYLNAL--------------------------------- 117 (790)
T ss_pred hCC-CCchHHHHhHH-HHcCCc--eeeecCCCcchHHHHHHHHHHHH---------------------------------
Confidence 366 79999999998 665654 99999999999999999984442
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
.+..|+|++||++||.|.+.++..+...+|+++++++|+.+...+.... ..+||+++||++| .++|...
T Consensus 118 ---------~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~ 187 (790)
T PRK09200 118 ---------EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDN 187 (790)
T ss_pred ---------cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhc
Confidence 3456999999999999999999999999999999999998843333333 4589999999999 5655432
Q ss_pred Cc---cccccccccEEEEecCchhhhcC-Chh---------------hHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 328 HF---HLTELYKINYLVIDETDRMIESG-HFP---------------ELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 328 ~~---~~~~l~~i~~lViDEAh~ll~~~-~~~---------------~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.. ....+..+.++||||||.|+=.. ..+ .+..+...+....
T Consensus 188 ~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~-------------------- 247 (790)
T PRK09200 188 LADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDV-------------------- 247 (790)
T ss_pred cccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCC--------------------
Confidence 11 11235678999999999987321 111 1111111110000
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchh-hhHHhhh------hccC------Ccccch-
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI-KRLQDLL------NIKS------PKIVDL- 454 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~------~~~~~~- 454 (1493)
.+.. ... .+.+.++..--..+..++.+. . ......... ..+...+ .... ..+.-+
T Consensus 248 --dy~~--d~~-~~~~~lt~~g~~~~e~~~~i~----~--l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD 316 (790)
T PRK09200 248 --DYEF--DEE-KKEVWLTDQGIEKAESYFGID----N--LYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVD 316 (790)
T ss_pred --CeEE--ecC-CCeEEecHhHHHHHHHhcCCc----c--ccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEE
Confidence 0000 011 122222211111111111000 0 000000000 0000000 0000 000000
Q ss_pred --hhhhccccccc----h------hhhhhccCCc---ch----hhHHHHhcCCCcchhhHHHhhhhccCCcccccccccc
Q psy16310 455 --TEKIGITKTLT----E------SKILCKHDEK---DS----YLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515 (1493)
Q Consensus 455 --~~~~~~~~~~~----~------~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1493)
++.......+. + ...+...... -. +..|.-...-..+.......+...+.-.+........
T Consensus 317 ~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp 396 (790)
T PRK09200 317 RFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRP 396 (790)
T ss_pred CCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCCCC
Confidence 00000000000 0 0000000000 00 0011111111122222223444444444444333333
Q ss_pred ccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc
Q psy16310 516 ITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592 (1493)
Q Consensus 516 ~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~ 592 (1493)
.........+.+....|...+...+.. .+.++||||+|+..++.++..|...|+++..+||.+.+.++..+...++.
T Consensus 397 ~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~ 476 (790)
T PRK09200 397 IIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK 476 (790)
T ss_pred cccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC
Confidence 222223344556667788888887754 46799999999999999999999999999999999999888888888776
Q ss_pred CCCeEEEEechhhccCCC---CCCc-----EEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcch
Q psy16310 593 QNNSILLATDVAARGLDI---PGIE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 593 g~~~VLVaTdv~~rGlDi---p~v~-----~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
| .|+|||++|+||+|| |+|. +||+|++|.+...|+||+|||||.|.+|.|++|++.+|.-
T Consensus 477 g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l 544 (790)
T PRK09200 477 G--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDL 544 (790)
T ss_pred C--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHH
Confidence 6 799999999999999 7999 9999999999999999999999999999999999886643
No 136
>KOG0352|consensus
Probab=100.00 E-value=2.8e-33 Score=304.90 Aligned_cols=336 Identities=18% Similarity=0.268 Sum_probs=248.4
Q ss_pred HHHHHHH-CCCCCC-cHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHH
Q psy16310 779 IIRALYQ-KGFKTP-TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 856 (1493)
Q Consensus 779 l~~~l~~-~g~~~p-t~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (1493)
+.++|++ +|+..+ ++.|++|+..++...+||.+++|||+||+|||.||.|-+
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------------------------- 60 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------------------------- 60 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------------------
Confidence 4455554 577665 899999999888888999999999999999999998731
Q ss_pred HHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh------cCCCcEE
Q psy16310 857 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL------NKCPHIL 930 (1493)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l------~~~~~Il 930 (1493)
+..+||+.|..+|+..+.+++..+- +++..+.+-++..+..+.+ +....++
T Consensus 61 -------------------~gITIV~SPLiALIkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~L 117 (641)
T KOG0352|consen 61 -------------------GGITIVISPLIALIKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKML 117 (641)
T ss_pred -------------------CCeEEEehHHHHHHHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEE
Confidence 2279999999999999999998764 6666677766665554433 2245799
Q ss_pred EECcHHHH-----HHHHhCcCccccccceeEEEecccchhccCCC--hhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 931 VATPGRLW-----EFIQLGHFHLTELYKINYLVIDETDRMIESGH--FPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 931 V~TP~rl~-----~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~--~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
.-||+... ++|+. +..-+.+.++|+||||++.+||+ .+++..+-. |. ..-.....+.++||.++.+
T Consensus 118 YITPE~AAt~~FQ~lLn~----L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~-LR--S~~~~vpwvALTATA~~~V 190 (641)
T KOG0352|consen 118 YITPEGAATDGFQKLLNG----LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGS-LR--SVCPGVPWVALTATANAKV 190 (641)
T ss_pred EEchhhhhhhhHHHHHHH----HhhhceeeeEEechhhhHhhhccccCcchhhhhh-HH--hhCCCCceEEeecccChhH
Confidence 99999753 22221 11223589999999999999985 555544322 21 1125678999999999888
Q ss_pred HhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh--------
Q psy16310 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-------- 1075 (1493)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-------- 1075 (1493)
.+.+...........+........++..-..+++ . -.+-...|.+|...
T Consensus 191 qEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~----------~-------------I~D~~~~LaDF~~~~LG~~~~~ 247 (641)
T KOG0352|consen 191 QEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKS----------F-------------ITDCLTVLADFSSSNLGKHEKA 247 (641)
T ss_pred HHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHH----------H-------------hhhHhHhHHHHHHHhcCChhhh
Confidence 8766433322222222222111111111000000 0 00111222222211
Q ss_pred ------CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEE
Q psy16310 1076 ------HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 1149 (1493)
Q Consensus 1076 ------~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~V 1149 (1493)
..|-.||||.|+..|+.++-.|...|+++..||+++...+|..+.+.|.++++.|++||..+++|+|-|+|+.|
T Consensus 248 ~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFV 327 (641)
T KOG0352|consen 248 SQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFV 327 (641)
T ss_pred hcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEE
Confidence 14678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHH
Q psy16310 1150 IHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193 (1493)
Q Consensus 1150 I~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~ 1193 (1493)
||+++|.+..-|.|..||+||.|...+|-+++...|...++-+.
T Consensus 328 iHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 328 IHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred EecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 99999999999999999999999999999999999987776554
No 137
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.4e-33 Score=336.81 Aligned_cols=300 Identities=20% Similarity=0.166 Sum_probs=202.6
Q ss_pred cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHH
Q psy16310 808 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTre 887 (1493)
+++++||||||||++|++|++..+.. ..+.+++|++||++
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----------------------------------------~~~~~ii~v~P~~~ 40 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----------------------------------------QKADRVIIALPTRA 40 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----------------------------------------CCCCeEEEEeehHH
Confidence 58999999999999999999976532 23457999999999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEcCCCHH------------HHHHHhc------CCCcEEEECcHHHHHHHHhCcCcc-
Q psy16310 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTE------------KQLRILN------KCPHILVATPGRLWEFIQLGHFHL- 948 (1493)
Q Consensus 888 La~Q~~~~~~~~~~~~~~~v~~~~gg~~~~------------~~~~~l~------~~~~IlV~TP~rl~~~l~~~~~~~- 948 (1493)
|+.|+++.+..++. ..+..++|+.... ....... ...+|+|+||+++...+..+....
T Consensus 41 L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~ 117 (358)
T TIGR01587 41 TINAMYRRAKELFG---SNLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYE 117 (358)
T ss_pred HHHHHHHHHHHHhC---cccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHH
Confidence 99999999999742 2344444433211 1111111 135799999999988776521110
Q ss_pred cccc--ceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchh
Q psy16310 949 TELY--KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026 (1493)
Q Consensus 949 ~~l~--~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1493)
..+. ..++|||||||.+.++++.. +..++..+. ..+.|+++||||+|..+...+........
T Consensus 118 ~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~----~~~~~~i~~SATlp~~l~~~~~~~~~~~~----------- 181 (358)
T TIGR01587 118 FTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK----DNDVPILLMSATLPKFLKEYAEKIGYVEF----------- 181 (358)
T ss_pred HHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH----HcCCCEEEEecCchHHHHHHHhcCCCccc-----------
Confidence 1111 23789999999998765533 666666553 24689999999999665544321110000
Q ss_pred HHHHhHhccCCCcEEeccccccccccceeeEEEe--cccchhhHHHHHHH--hCCCcEEEEecchhhHHHHHHHHHhcCC
Q psy16310 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC--KHDEKDSYLYYFIL--QHPGRTLVFCNSISSVKRLTQLLTMLKC 1102 (1493)
Q Consensus 1027 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~ 1102 (1493)
......... .....+....+ ....+...+..++. ..++++||||+|+++|+.++..|...+.
T Consensus 182 -----------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~ 247 (358)
T TIGR01587 182 -----------NEPLDLKEE---RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAP 247 (358)
T ss_pred -----------ccCCCCccc---cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcC
Confidence 000000000 00000111111 11223333433333 3468999999999999999999988766
Q ss_pred --CccccccCCCHHHHHH----HHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCC-
Q psy16310 1103 --SPLPLHASMNQRQRLK----NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG- 1175 (1493)
Q Consensus 1103 --~~~~lhg~m~~~~R~~----~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G- 1175 (1493)
.+..+||+|++.+|.+ +++.|++|...|||||+++++|+|++ +++||++..| .++|+||+||+||.|+.+
T Consensus 248 ~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~ 324 (358)
T TIGR01587 248 EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNG 324 (358)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCC
Confidence 4889999999999976 48999999999999999999999995 8999998776 789999999999998643
Q ss_pred ---eEEEEecC
Q psy16310 1176 ---LTLVLIES 1183 (1493)
Q Consensus 1176 ---~~i~l~~~ 1183 (1493)
..+++...
T Consensus 325 ~~~~~~v~~~~ 335 (358)
T TIGR01587 325 ENFEVYIITIA 335 (358)
T ss_pred CCCeEEEEeec
Confidence 55665543
No 138
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.3e-31 Score=326.80 Aligned_cols=351 Identities=17% Similarity=0.204 Sum_probs=237.8
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+++|..+.+ ++..|+ |+.++||+|||++|.+|++-..+.
T Consensus 53 lg~-~p~~vQlig~~-~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-------------------------------- 96 (745)
T TIGR00963 53 LGM-RPFDVQLIGGI-ALHKGK--IAEMKTGEGKTLTATLPAYLNALT-------------------------------- 96 (745)
T ss_pred hCC-CccchHHhhhh-hhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------------------------------
Confidence 354 78999999997 565654 999999999999999999643322
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~ 944 (1493)
+..+.|++||++||.|.++.+..+..++++++++++||.+...+.... .++|+||||++| .++++.+
T Consensus 97 ----------G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~ 164 (745)
T TIGR00963 97 ----------GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDN 164 (745)
T ss_pred ----------CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcc
Confidence 225999999999999999999999999999999999999876554443 479999999999 8888765
Q ss_pred cCc---cccccceeEEEecccchhccCC-C---------------hhHHHHHHHHhccc---------------------
Q psy16310 945 HFH---LTELYKINYLVIDETDRMIESG-H---------------FPELKNILDRVTMT--------------------- 984 (1493)
Q Consensus 945 ~~~---~~~l~~l~~lVlDEah~ll~~~-~---------------~~~l~~il~~l~~~--------------------- 984 (1493)
... ...++.+.++|+||+|+|+-+. . +.....+...|...
T Consensus 165 ~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~ 244 (745)
T TIGR00963 165 MAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKK 244 (745)
T ss_pred cccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHH
Confidence 211 1246789999999999974311 0 00111111111100
Q ss_pred ----------CCC---------------------------CCceEEEEe---------cccccchHhHHhhhccCcCccc
Q psy16310 985 ----------ETS---------------------------QPRQTFVFS---------ATLTHSLKNSLNLKKGQSKSKK 1018 (1493)
Q Consensus 985 ----------~~~---------------------------~~~q~ll~S---------ATl~~~~~~~~~~~~~~~~~~~ 1018 (1493)
... .+-.+++.- -+++..+.+.+..+-+......
T Consensus 245 ~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e 324 (745)
T TIGR00963 245 AEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNE 324 (745)
T ss_pred HHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCC
Confidence 000 001122221 1122334444433222111100
Q ss_pred c-cCCCchhHHH------------------HhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHH---HhC
Q psy16310 1019 V-SKGDPSIKRL------------------QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQH 1076 (1493)
Q Consensus 1019 ~-~~~~~~~~~l------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~~ 1076 (1493)
. ....-....+ .....+.+-.++.+.........-....+.....+|...++..+ ...
T Consensus 325 ~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~ 404 (745)
T TIGR00963 325 NQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAK 404 (745)
T ss_pred ceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhc
Confidence 0 0000000000 11111222222222222111111111223344455666665554 345
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCC-------ccEE
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG-------IEHV 1149 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~-------v~~V 1149 (1493)
+.++||||+|+..++.++..|...|++...+||. +.+|+..+..|+.+...|+|||++++||+||+. ..||
T Consensus 405 grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~V 482 (745)
T TIGR00963 405 GQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYV 482 (745)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEE
Confidence 7899999999999999999999999999999998 889999999999999999999999999999998 5599
Q ss_pred EEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1150 IHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1150 I~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
|+++.|.|...|.||+|||||.|.+|.+..|++..|.
T Consensus 483 I~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 483 IGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred EecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999999999999999999987754
No 139
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.7e-31 Score=328.39 Aligned_cols=350 Identities=16% Similarity=0.175 Sum_probs=232.0
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.|. .|+++|...+. ++..| .+++++||+|||++|++|++...+.
T Consensus 67 lgl-rpydVQlig~l-~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~-------------------------------- 110 (762)
T TIGR03714 67 LGM-FPYDVQVLGAI-VLHQG--NIAEMKTGEGKTLTATMPLYLNALT-------------------------------- 110 (762)
T ss_pred cCC-CccHHHHHHHH-HhcCC--ceeEecCCcchHHHHHHHHHHHhhc--------------------------------
Confidence 465 66667766665 34444 6999999999999999998755432
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCC---HHHHHHHhcCCCcEEEECcHHH-HHHH
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS---TEKQLRILNKCPHILVATPGRL-WEFI 941 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~---~~~~~~~l~~~~~IlV~TP~rl-~~~l 941 (1493)
+..++|++||++||.|+++.+..+..++++++.+++++.. ...+.+....+++|++|||++| .+.|
T Consensus 111 ----------g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyL 180 (762)
T TIGR03714 111 ----------GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYL 180 (762)
T ss_pred ----------CCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHH
Confidence 2359999999999999999999999999999999887632 2222333346789999999999 5655
Q ss_pred HhCcC---ccccccceeEEEecccchhccCC----------------ChhHHHHHHHHhcccC-------------C---
Q psy16310 942 QLGHF---HLTELYKINYLVIDETDRMIESG----------------HFPELKNILDRVTMTE-------------T--- 986 (1493)
Q Consensus 942 ~~~~~---~~~~l~~l~~lVlDEah~ll~~~----------------~~~~l~~il~~l~~~~-------------~--- 986 (1493)
..... .-..+..+.++|+||||.|+-+. .+.....++..|.... +
T Consensus 181 rD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G 260 (762)
T TIGR03714 181 IDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKG 260 (762)
T ss_pred HHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhH
Confidence 43211 11235678999999999974321 1112222222221100 0
Q ss_pred ---------------C---------------------------CCceEEEEec-c--------cccchHhHHhhhccCcC
Q psy16310 987 ---------------S---------------------------QPRQTFVFSA-T--------LTHSLKNSLNLKKGQSK 1015 (1493)
Q Consensus 987 ---------------~---------------------------~~~q~ll~SA-T--------l~~~~~~~~~~~~~~~~ 1015 (1493)
+ .+-.++++-. | ++..+.+.+..+-+...
T Consensus 261 ~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i 340 (762)
T TIGR03714 261 IEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVEL 340 (762)
T ss_pred HHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCC
Confidence 0 0011222211 1 22223333322222111
Q ss_pred cc---------------------cccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH
Q psy16310 1016 SK---------------------KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074 (1493)
Q Consensus 1016 ~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 1074 (1493)
.. ....... ..-.....+.+-.++.+.........-....+.+...+|...++..+.
T Consensus 341 ~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~--~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~ 418 (762)
T TIGR03714 341 SKETRAMASITYQNLFKMFNKLSGMTGTGK--VAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVK 418 (762)
T ss_pred CCCceeeeeeeHHHHHhhCchhcccCCCCh--hHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHH
Confidence 00 0000000 000111222233333333322222222223456666778888877765
Q ss_pred h---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCC-------
Q psy16310 1075 Q---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP------- 1144 (1493)
Q Consensus 1075 ~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip------- 1144 (1493)
. .+.++||||+|+..++.++..|...|+++..+||++.+.+|..+..+|+.| .|+|||++++||+|||
T Consensus 419 ~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~ 496 (762)
T TIGR03714 419 EYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAE 496 (762)
T ss_pred HHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccc
Confidence 4 367999999999999999999999999999999999999988888777766 7999999999999999
Q ss_pred --CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1145 --GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1145 --~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
++.+|++|++|..... +||+|||||.|.+|.+++|++..|.
T Consensus 497 ~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 497 LGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred cCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 9999999999998777 9999999999999999999988664
No 140
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.9e-32 Score=337.35 Aligned_cols=334 Identities=17% Similarity=0.199 Sum_probs=217.0
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
...|+++|.++++.++ .+++.++++|||||||+++++.+. .+..
T Consensus 112 ~~~~r~~Q~~av~~~l-~~~~~il~apTGsGKT~i~~~l~~-~~~~---------------------------------- 155 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL-KNNRRLLNLPTSAGKSLIQYLLSR-YYLE---------------------------------- 155 (501)
T ss_pred cCCCCHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHH-HHHh----------------------------------
Confidence 3579999999998655 567899999999999998754322 2211
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcc
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~ 330 (1493)
....++|||+||++|+.|+.+.+..++......+..+.||.... ...+|+|+||++|.+....
T Consensus 156 ------~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~---- 218 (501)
T PHA02558 156 ------NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE---- 218 (501)
T ss_pred ------cCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchhh----
Confidence 12237999999999999999999988755455566666665432 3469999999999764321
Q ss_pred ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeecc
Q psy16310 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410 (1493)
Q Consensus 331 ~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl 410 (1493)
.+.++++||+||||++... .+..++..+ +..+++++||||+
T Consensus 219 --~~~~~~~iIvDEaH~~~~~----~~~~il~~~---------------------------------~~~~~~lGLTATp 259 (501)
T PHA02558 219 --WFDQFGMVIVDECHLFTGK----SLTSIITKL---------------------------------DNCKFKFGLTGSL 259 (501)
T ss_pred --hccccCEEEEEchhcccch----hHHHHHHhh---------------------------------hccceEEEEeccC
Confidence 2457899999999999653 345555544 2235899999999
Q ss_pred chhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCc
Q psy16310 411 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490 (1493)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1493)
+........+. .+++ +........ ...... .+........ ....+
T Consensus 260 ~~~~~~~~~~~--------------------~~fG---~i~~~v~~~----~li~~g-~l~~~~~~~v-----~~~~~-- 304 (501)
T PHA02558 260 RDGKANILQYV--------------------GLFG---DIFKPVTTS----QLMEEG-QVTDLKINSI-----FLRYP-- 304 (501)
T ss_pred CCccccHHHHH--------------------HhhC---CceEEecHH----HHHhCC-CcCCceEEEE-----eccCC--
Confidence 64322111000 0000 000000000 000000 0000000000 00000
Q ss_pred chhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH---hhCCCcEEEEecchhhHHHHHHHHHhc
Q psy16310 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTML 567 (1493)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~ 567 (1493)
....... ... .. ............+...+.... ...+.++||||++.++++.|++.|...
T Consensus 305 --~~~~~~~---~~~---------~~---~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~ 367 (501)
T PHA02558 305 --DEDRVKL---KGE---------DY---QEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV 367 (501)
T ss_pred --HHHhhhh---ccc---------ch---HHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc
Confidence 0000000 000 00 000011122233444433333 234578999999999999999999999
Q ss_pred CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEe-chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEE
Q psy16310 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT-DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646 (1493)
Q Consensus 568 ~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaT-dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~ 646 (1493)
+..+..+||+|++.+|..+++.|++|+..||||| +++++|+|+|++++||++++|.+...|+||+||++|.+..+...+
T Consensus 368 g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~ 447 (501)
T PHA02558 368 YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIAT 447 (501)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEE
Confidence 9999999999999999999999999999999999 899999999999999999999999999999999999886654444
Q ss_pred Ee
Q psy16310 647 LI 648 (1493)
Q Consensus 647 l~ 648 (1493)
++
T Consensus 448 i~ 449 (501)
T PHA02558 448 VW 449 (501)
T ss_pred EE
Confidence 43
No 141
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.2e-31 Score=353.16 Aligned_cols=405 Identities=21% Similarity=0.262 Sum_probs=243.8
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
+.-.|++||.+++..++. + |+|+++|||+|||++|++++.+.+.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~-~-n~lv~~ptG~GKT~~a~~~i~~~l~---------------------------------- 55 (773)
T PRK13766 12 NTIEARLYQQLLAATALK-K-NTLVVLPTGLGKTAIALLVIAERLH---------------------------------- 55 (773)
T ss_pred CcCCccHHHHHHHHHHhc-C-CeEEEcCCCccHHHHHHHHHHHHHH----------------------------------
Confidence 334799999999976653 3 9999999999999999999887662
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
..+.++|||+||++|+.|+.+.+..+....+..+..++|+....... .+...++|+|+||+.+.+.+..+..
T Consensus 56 -------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~-~~~~~~~iiv~T~~~l~~~l~~~~~ 127 (773)
T PRK13766 56 -------KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRA-ELWEKAKVIVATPQVIENDLIAGRI 127 (773)
T ss_pred -------hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHH-HHHhCCCEEEECHHHHHHHHHcCCC
Confidence 12357999999999999999999988655556888899988766543 3344569999999999887766554
Q ss_pred cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
. +.++++|||||||++.....+..+...+... .....+++||||
T Consensus 128 ~---~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~---------------------------------~~~~~il~lTaT 171 (773)
T PRK13766 128 S---LEDVSLLIFDEAHRAVGNYAYVYIAERYHED---------------------------------AKNPLVLGLTAS 171 (773)
T ss_pred C---hhhCcEEEEECCccccccccHHHHHHHHHhc---------------------------------CCCCEEEEEEcC
Confidence 3 4478999999999997554443333322211 223568899999
Q ss_pred cchhhhhhhhhhccc--cccccccC--------------------CCchhhhHHhhhhccCCcccchhhhhcccccc---
Q psy16310 410 LTHSLKNSLNLKKGQ--SKSKKVSK--------------------GDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL--- 464 (1493)
Q Consensus 410 l~~~~~~~~~~~~~~--~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 464 (1493)
+......+....... ........ ..+....+...+..............+.....
T Consensus 172 P~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~ 251 (773)
T PRK13766 172 PGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPD 251 (773)
T ss_pred CCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCC
Confidence 743322111110000 00000000 00111111111000000000000000000000
Q ss_pred -c--h-------hhhhhccCCcchhhH--------------HHHhcCCCcchhhHHHhhhhccC-Cccccccccc----c
Q psy16310 465 -T--E-------SKILCKHDEKDSYLY--------------YFILQHPGRTLCEEIQDLLNIKS-PKIVDLTEKI----G 515 (1493)
Q Consensus 465 -~--~-------~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~ 515 (1493)
. . ............+.. ..+.......+..-+..+..... .........+ .
T Consensus 252 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~ 331 (773)
T PRK13766 252 VSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPR 331 (773)
T ss_pred cCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHH
Confidence 0 0 000000000000000 00000000000000000000000 0000000000 0
Q ss_pred ccccccccccccccCchhhHHHHHHhh-----CCCcEEEEecchhhHHHHHHHHHhcCCCccccccC--------CCHHH
Q psy16310 516 ITKTLTESKILCKHDEKDSYLYYFILQ-----HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS--------MNQRQ 582 (1493)
Q Consensus 516 ~~~~~~~~~~~~~~~~k~~~l~~~l~~-----~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~--------~~~~~ 582 (1493)
................|...|..++.. .++++||||+++.+|..|+..|...++.+..+||. |++.+
T Consensus 332 ~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~ 411 (773)
T PRK13766 332 FRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKE 411 (773)
T ss_pred HHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHH
Confidence 000000111122345677777777754 35799999999999999999999989998888885 99999
Q ss_pred HHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 583 R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
|..+++.|++|+.+|||||+++++|+|+|+|++||+||+|.+...|+||+||+||.| +|.+++++..+....
T Consensus 412 r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ee 483 (773)
T PRK13766 412 QIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTRDE 483 (773)
T ss_pred HHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCChHH
Confidence 999999999999999999999999999999999999999999999999999999987 599999988766543
No 142
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.6e-32 Score=332.94 Aligned_cols=418 Identities=18% Similarity=0.215 Sum_probs=249.7
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHH-HHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL-TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
|. .|+++|..+.+ ++..|+ |+.++||+|||++|++|++ +.+.
T Consensus 54 g~-~p~~vQlig~~-~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------------------------------- 96 (745)
T TIGR00963 54 GM-RPFDVQLIGGI-ALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------------------------------- 96 (745)
T ss_pred CC-CccchHHhhhh-hhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------------------------------
Confidence 55 69999999997 565554 9999999999999999985 4431
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
+..|.||+||++||.|.++++..+..++|+++++++|+.+........ .++|+|+||++| .++|..+
T Consensus 97 ----------G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~ 164 (745)
T TIGR00963 97 ----------GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDN 164 (745)
T ss_pred ----------CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcc
Confidence 234999999999999999999999999999999999998876654444 479999999999 8888755
Q ss_pred Cc---cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhc-cccCCCCCceE
Q psy16310 328 HF---HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV-TMTETSQPRQT 403 (1493)
Q Consensus 328 ~~---~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~ 403 (1493)
.. ....++.+.++||||||.++-+.....+ ++. .+...+...+... ..+.+.+..- ....... .+.
T Consensus 165 ~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpL--iis----g~~~~~~~ly~~a---~~i~r~L~~~~dy~~de~-~k~ 234 (745)
T TIGR00963 165 MAHSKEEKVQRPFHFAIIDEVDSILIDEARTPL--IIS----GPAEKSTELYLQA---NRFAKALEKEVHYEVDEK-NRA 234 (745)
T ss_pred cccchhhhhccccceeEeecHHHHhHHhhhhHH--hhc----CCCCCchHHHHHH---HHHHHhhccCCCeEEecC-CCc
Confidence 21 1123568999999999998742211110 110 0000000000000 0111111100 0000011 222
Q ss_pred EEEeeccchhhhhhhhhhccccccccccC-CCchhhhHHhhhh-----ccC-Ccccchhhhhccccccchh---------
Q psy16310 404 FVFSATLTHSLKNSLNLKKGQSKSKKVSK-GDPSIKRLQDLLN-----IKS-PKIVDLTEKIGITKTLTES--------- 467 (1493)
Q Consensus 404 il~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~--------- 467 (1493)
+.++.-=-..+..++.+. ..... .......+...+. ... .+++. .+...+....+..
T Consensus 235 v~Lt~~G~~~~e~~~~~~------~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~-d~~V~ivD~~TGR~~~gr~ws~ 307 (745)
T TIGR00963 235 VLLTEKGIKKAEDLLGVD------NLYDLENSPLIHYINNALKAKELFEKDVDYIVR-DGEVVIVDEFTGRIMEGRRWSD 307 (745)
T ss_pred eeECHHHHHHHHHHcCCc------cccChhhhHHHHHHHHHHHHHHHHhcCCcEEEE-CCEEEEEECCCCcCCCCCccch
Confidence 322211001122222110 00000 0001111111110 000 11100 0000000000000
Q ss_pred ----hhhhcc-------CC---cchhhHHH----HhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccccc
Q psy16310 468 ----KILCKH-------DE---KDSYLYYF----ILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH 529 (1493)
Q Consensus 468 ----~~~~~~-------~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1493)
.+-.+. .. .-.+..+| -...-..+.......+...+.-.+.................++...
T Consensus 308 GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~ 387 (745)
T TIGR00963 308 GLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTE 387 (745)
T ss_pred HHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCH
Confidence 000000 00 00111111 1111112223333344444444444433333332222333344445
Q ss_pred CchhhHHHHHH---hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhc
Q psy16310 530 DEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606 (1493)
Q Consensus 530 ~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~r 606 (1493)
..|...+...+ ...+.++||||+|...++.++..|...|++...+||. +.+|...+..|+.+...|+|||++|+|
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgR 465 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGR 465 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccC
Confidence 56666666554 3346799999999999999999999999999999998 889999999999999999999999999
Q ss_pred cCCCCC-------CcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 607 GLDIPG-------IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 607 GlDip~-------v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
|+||+. .-+||+|+.|.|...|.||+|||||.|.+|.+.+|++.+|.-.
T Consensus 466 GtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 466 GTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred CcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 999998 5599999999999999999999999999999999998876443
No 143
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=8.3e-32 Score=331.11 Aligned_cols=417 Identities=15% Similarity=0.140 Sum_probs=242.5
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|..... ++.. ..|+.++||+|||++|++|++.+.+
T Consensus 68 gl-rpydVQlig~l-~l~~--G~Iaem~TGeGKTLta~Lpa~l~aL---------------------------------- 109 (762)
T TIGR03714 68 GM-FPYDVQVLGAI-VLHQ--GNIAEMKTGEGKTLTATMPLYLNAL---------------------------------- 109 (762)
T ss_pred CC-CccHHHHHHHH-HhcC--CceeEecCCcchHHHHHHHHHHHhh----------------------------------
Confidence 55 67777776665 4444 3699999999999999999865442
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCC---HHHHHHHhcCCCCEEEeCcHHH-HHHHH
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS---TEKQLRILNKCPHILVATPGRL-WEFIQ 325 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~---~~~~~~~l~~~~~IiV~TP~~L-~~~l~ 325 (1493)
.+..++|++||++||.|..+++..+...+|+++++++++.. ..........+++|+++||++| .+.|.
T Consensus 110 --------~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLr 181 (762)
T TIGR03714 110 --------TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLI 181 (762)
T ss_pred --------cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHH
Confidence 22359999999999999999999999999999999887622 2222333345789999999999 45553
Q ss_pred cCC---ccccccccccEEEEecCchhhhcC-ChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhc-cccCCCCC
Q psy16310 326 LGH---FHLTELYKINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV-TMTETSQP 400 (1493)
Q Consensus 326 ~~~---~~~~~l~~i~~lViDEAh~ll~~~-~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 400 (1493)
... ..-..+..+.++|+||||.||-+. ..+.+ +..- ...... . ......+.+.+... ...- ...
T Consensus 182 D~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli---isg~----~~~~~~-~--y~~~~~~v~~l~~~~dy~~-d~~ 250 (762)
T TIGR03714 182 DNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV---ISGA----PRVQSN-L--YHIADTFVRTLKEDVDYIF-KKD 250 (762)
T ss_pred HHhhcchhhcccccCcEEEEecHhhHhhccCcCCee---eeCC----CccchH-H--HHHHHHHHHhcCCCCCeEE-EcC
Confidence 221 111125578999999999997443 11100 0000 000000 0 00000000000000 0000 011
Q ss_pred ceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhh----------hccCCccc------ch---hhhhccc
Q psy16310 401 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL----------NIKSPKIV------DL---TEKIGIT 461 (1493)
Q Consensus 401 ~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~------~~---~~~~~~~ 461 (1493)
.+.+.++..--..+..++.+. ...++....+..++ .....+++ -+ ++.....
T Consensus 251 ~~~v~lt~~G~~~~e~~~~~~---------~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~g 321 (762)
T TIGR03714 251 KKEVWLTDKGIEKAEQYFKID---------NLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEG 321 (762)
T ss_pred CCeeeecHhHHHHHHHHcCCC---------ccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCC
Confidence 223333322112222222110 00111111111110 00001110 00 0000000
Q ss_pred cccchh---hhhhcc-------CC---cchhhHHHH----hcCCCcchhhHHHhhhhccCCccccccccccccccccccc
Q psy16310 462 KTLTES---KILCKH-------DE---KDSYLYYFI----LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESK 524 (1493)
Q Consensus 462 ~~~~~~---~~~~~~-------~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1493)
..+... .+-... .. .-.+..+|- ...-..+.......+...+.-.+.................
T Consensus 322 r~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~ 401 (762)
T TIGR03714 322 TKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDK 401 (762)
T ss_pred CCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCe
Confidence 000000 000000 00 011111111 1111122233334444555544444444433333333445
Q ss_pred cccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEe
Q psy16310 525 ILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601 (1493)
Q Consensus 525 ~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaT 601 (1493)
+++....|...+...+.. .+.++||||+|+..++.++..|...|+++..+||.+.+.++..+..+|+.| .|+|||
T Consensus 402 i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIAT 479 (762)
T TIGR03714 402 IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVAT 479 (762)
T ss_pred EEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEc
Confidence 666777788888877754 367999999999999999999999999999999999999988887777777 799999
Q ss_pred chhhccCCCC---------CCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 602 DVAARGLDIP---------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 602 dv~~rGlDip---------~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
|+++||+||| ++.+|++|++|....+ +||+|||||.|.+|.+++|++.+|.-.
T Consensus 480 dmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~ 541 (762)
T TIGR03714 480 SMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLI 541 (762)
T ss_pred cccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhhh
Confidence 9999999999 9999999999988777 999999999999999999998866443
No 144
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.2e-32 Score=323.97 Aligned_cols=304 Identities=20% Similarity=0.177 Sum_probs=200.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHH
Q psy16310 191 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTre 270 (1493)
+++++||||||||++|++|++..+.. ..+.+++|++||++
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----------------------------------------~~~~~ii~v~P~~~ 40 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----------------------------------------QKADRVIIALPTRA 40 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----------------------------------------CCCCeEEEEeehHH
Confidence 68999999999999999999976532 23357999999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEcCCCHH------------HHHHHhc------CCCCEEEeCcHHHHHHHHcCCccc-
Q psy16310 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTE------------KQLRILN------KCPHILVATPGRLWEFIQLGHFHL- 331 (1493)
Q Consensus 271 La~Qi~~~~~~l~~~~~i~v~~~~G~~~~~------------~~~~~l~------~~~~IiV~TP~~L~~~l~~~~~~~- 331 (1493)
|+.|+++.+..+... .+..++|+.... ..+.... ...+|+|+||+.++..+..+....
T Consensus 41 L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~ 117 (358)
T TIGR01587 41 TINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYE 117 (358)
T ss_pred HHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHH
Confidence 999999999887432 344444443211 1111111 125799999999988876522111
Q ss_pred cccc--cccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 332 TELY--KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 332 ~~l~--~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
..+. ..++|||||||.+.+.++.. +..++..+. ....|+++||||
T Consensus 118 ~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~--------------------------------~~~~~~i~~SAT 164 (358)
T TIGR01587 118 FTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK--------------------------------DNDVPILLMSAT 164 (358)
T ss_pred HHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH--------------------------------HcCCCEEEEecC
Confidence 0011 24789999999998764433 555554442 124689999999
Q ss_pred cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCC
Q psy16310 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489 (1493)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1493)
+|..+..++....... ......... ..... .
T Consensus 165 lp~~l~~~~~~~~~~~----------------------~~~~~~~~~----~~~~~----------~------------- 195 (358)
T TIGR01587 165 LPKFLKEYAEKIGYVE----------------------FNEPLDLKE----ERRFE----------R------------- 195 (358)
T ss_pred chHHHHHHHhcCCCcc----------------------cccCCCCcc----ccccc----------c-------------
Confidence 9966544432100000 000000000 00000 0
Q ss_pred cchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHh--hCCCcEEEEecchhhHHHHHHHHHhc
Q psy16310 490 RTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL--QHPGRTLVFCNSISSVKRLTQLLTML 567 (1493)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~IIF~~s~~~a~~L~~~L~~~ 567 (1493)
... .........+...+..++. ..++++||||++++.|+.++..|...
T Consensus 196 ---------------~~~---------------~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~ 245 (358)
T TIGR01587 196 ---------------HRF---------------IKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKEN 245 (358)
T ss_pred ---------------ccc---------------eeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhh
Confidence 000 0000000112222333332 24679999999999999999999877
Q ss_pred CC--CccccccCCCHHHHHH----HHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCC
Q psy16310 568 KC--SPLPLHASMNQRQRLK----NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641 (1493)
Q Consensus 568 ~~--~~~~lhg~~~~~~R~~----vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~ 641 (1493)
+. .+..+||+|++.+|.+ +++.|++|...|||||+++++|+||+ +++||+|..| +.+|+||+||+||.|+.
T Consensus 246 ~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~ 322 (358)
T TIGR01587 246 APEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRK 322 (358)
T ss_pred cCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCC
Confidence 65 4889999999999976 48999999999999999999999995 8999999877 78999999999998865
Q ss_pred ----CeEEEEecCCc
Q psy16310 642 ----GLTVVLIESDE 652 (1493)
Q Consensus 642 ----G~~i~l~~~~e 652 (1493)
|.++++....+
T Consensus 323 ~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 323 NGENFEVYIITIAPE 337 (358)
T ss_pred CCCCCeEEEEeecCC
Confidence 36676665544
No 145
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=8.4e-32 Score=354.63 Aligned_cols=315 Identities=17% Similarity=0.230 Sum_probs=210.9
Q ss_pred HHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHH
Q psy16310 161 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 240 (1493)
Q Consensus 161 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1493)
...+.+.+.....|+++|+.++|. +..|+|++++||||||||+ |++|+...+..
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~-il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~------------------------ 119 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKR-VLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK------------------------ 119 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHH-HhCCCeEEEECCCCCCHHH-HHHHHHHHHHh------------------------
Confidence 344555554455799999999994 5578999999999999997 77777655421
Q ss_pred HHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEE---EEEEcCCCHHHHH---HHhc-CCCCEE
Q psy16310 241 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV---ACVVGGMSTEKQL---RILN-KCPHIL 313 (1493)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v---~~~~G~~~~~~~~---~~l~-~~~~Ii 313 (1493)
.++++|||+|||+||.|+++.+..++...++.+ ..++|+.+...+. ..+. ++++||
T Consensus 120 -----------------~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIl 182 (1171)
T TIGR01054 120 -----------------KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDIL 182 (1171)
T ss_pred -----------------cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 246799999999999999999999987766554 3567988876543 2333 358999
Q ss_pred EeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-----------cCChhh-HHHHHHhhccccCCCccccccccCC
Q psy16310 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHFPE-LKNILDRVTMTETSQPRQTMIESGH 381 (1493)
Q Consensus 314 V~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-----------~~~~~~-l~~il~~l~~~~~~~~~~~~~~~~~ 381 (1493)
|+||++|.+.+..- . . +++++||||||+|++ +||.++ +..+++.+....... .
T Consensus 183 V~Tp~rL~~~~~~l----~-~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~---------~ 247 (1171)
T TIGR01054 183 ITTTMFLSKNYDEL----G-P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLY---------R 247 (1171)
T ss_pred EECHHHHHHHHHHh----c-C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccc---------h
Confidence 99999998877531 1 1 689999999999998 567653 566655432210000 0
Q ss_pred cchhhhhhhhccccCCCCCce--EEEEeec-cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhh
Q psy16310 382 FPELKNILDRVTMTETSQPRQ--TFVFSAT-LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458 (1493)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~q--~il~SAT-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1493)
...+....... ...+..+| +++|||| .|..+...+. .+++. +.+.
T Consensus 248 ~~~~~~~~~~~--~~~~~~~q~~li~~SAT~~p~~~~~~l~---------------------r~ll~------~~v~--- 295 (1171)
T TIGR01054 248 ALHAKKRLELL--EAIPGKKRGCLIVSSATGRPRGKRAKLF---------------------RELLG------FEVG--- 295 (1171)
T ss_pred HHHHHHHHHHH--HhhhhccCcEEEEEeCCCCccccHHHHc---------------------ccccc------eEec---
Confidence 00000000000 01123334 6779999 4543321110 00000 0000
Q ss_pred ccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHH
Q psy16310 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 538 (1493)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 538 (1493)
........+.+.+..+. .+...+..
T Consensus 296 -----------------------------------------------------~~~~~~r~I~~~~~~~~--~~~~~L~~ 320 (1171)
T TIGR01054 296 -----------------------------------------------------GGSDTLRNVVDVYVEDE--DLKETLLE 320 (1171)
T ss_pred -----------------------------------------------------CccccccceEEEEEecc--cHHHHHHH
Confidence 00000001111111111 11334556
Q ss_pred HHhhCCCcEEEEecch---hhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEE----echhhccCCCC
Q psy16310 539 FILQHPGRTLVFCNSI---SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIP 611 (1493)
Q Consensus 539 ~l~~~~~~~IIF~~s~---~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVa----Tdv~~rGlDip 611 (1493)
++...+.++||||+++ +.|+.|+..|...|+.+..+||+|++ .+++.|++|+++|||| |++++||||+|
T Consensus 321 ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip 396 (1171)
T TIGR01054 321 IVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLP 396 (1171)
T ss_pred HHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCC
Confidence 6666677899999999 99999999999999999999999973 6899999999999999 49999999999
Q ss_pred C-CcEEEEecCCCC
Q psy16310 612 G-IEHVIHYHVPRT 624 (1493)
Q Consensus 612 ~-v~~VI~yd~P~s 624 (1493)
+ |++|||||+|..
T Consensus 397 ~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 397 ERVRYAVFLGVPKF 410 (1171)
T ss_pred ccccEEEEECCCCE
Confidence 9 899999999976
No 146
>KOG0354|consensus
Probab=100.00 E-value=9.2e-32 Score=322.72 Aligned_cols=364 Identities=23% Similarity=0.263 Sum_probs=239.8
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHH
Q psy16310 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 855 (1493)
Q Consensus 776 ~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1493)
++.......--+...++.||.+....+| |+|+|+++|||+|||++++..++.++
T Consensus 48 ~~s~~~~~~~p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~------------------------ 101 (746)
T KOG0354|consen 48 DESAAQRWIYPTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHF------------------------ 101 (746)
T ss_pred ChhhhccccccCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHH------------------------
Confidence 3333333333455678999999998888 89999999999999999999998887
Q ss_pred HHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcH
Q psy16310 856 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935 (1493)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 935 (1493)
...++.++|+++||+-|+.|+...+..++.. ..+....||.........+-...+|+|+||+
T Consensus 102 ----------------rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQ 163 (746)
T KOG0354|consen 102 ----------------EWRPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQ 163 (746)
T ss_pred ----------------hcCCcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChH
Confidence 2234478999999999999999777777644 5666666775443333344456799999999
Q ss_pred HHHHHHHhCcCccccccceeEEEecccchhccCCChhHHH-HHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCc
Q psy16310 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELK-NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014 (1493)
Q Consensus 936 rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~-~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~ 1014 (1493)
.|.+.|.++.... |+.+.++||||||+-....-+..+. ..+..- ....|++++|||+............+..
T Consensus 164 il~ndL~~~~~~~--ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k-----~~~~qILgLTASpG~~~~~v~~~I~~L~ 236 (746)
T KOG0354|consen 164 ILENDLKSGLHDE--LSDFSLIVFDECHRTSKNHPYNNIMREYLDLK-----NQGNQILGLTASPGSKLEQVQNVIDNLC 236 (746)
T ss_pred hhhhhcccccccc--cceEEEEEEcccccccccccHHHHHHHHHHhh-----hccccEEEEecCCCccHHHHHHHHHhhh
Confidence 9999998766543 7789999999999976654444443 333322 2334999999999854333220000000
Q ss_pred --------------------------------------------------------C---cccccC-------------C
Q psy16310 1015 --------------------------------------------------------K---SKKVSK-------------G 1022 (1493)
Q Consensus 1015 --------------------------------------------------------~---~~~~~~-------------~ 1022 (1493)
. ...... .
T Consensus 237 asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (746)
T KOG0354|consen 237 ASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNG 316 (746)
T ss_pred eecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCC
Confidence 0 000000 0
Q ss_pred C--ch--hHHHH--h----HhccCCCcEE-------eccccccccc-------------------cceeeEEE-ecccch
Q psy16310 1023 D--PS--IKRLQ--D----LLNIKSPKIV-------DLTEKIGITK-------------------TLTESKIL-CKHDEK 1065 (1493)
Q Consensus 1023 ~--~~--~~~l~--~----~~~~~~~~~~-------~~~~~~~~~~-------------------~~~~~~~~-~~~~~k 1065 (1493)
. .. +..+. . .+....-..+ +......... .+...... .....|
T Consensus 317 ~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npk 396 (746)
T KOG0354|consen 317 PENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPK 396 (746)
T ss_pred CccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChh
Confidence 0 00 00000 0 0000000000 0000000000 00000000 012345
Q ss_pred hhHHHHHHHhC-----CCcEEEEecchhhHHHHHHHHHhc---CCCcccc--------ccCCCHHHHHHHHHHHhcCCCC
Q psy16310 1066 DSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTML---KCSPLPL--------HASMNQRQRLKNLDRFRDQNNS 1129 (1493)
Q Consensus 1066 ~~~l~~~l~~~-----~~~~IVF~~s~~~~~~l~~~L~~~---~~~~~~l--------hg~m~~~~R~~~~~~F~~g~~~ 1129 (1493)
...+..++..+ ..++||||.++..|..|..+|... |++...+ ..+|+|.++..+++.|+.|+++
T Consensus 397 le~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N 476 (746)
T KOG0354|consen 397 LEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN 476 (746)
T ss_pred HHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc
Confidence 55555555432 568999999999999999999832 3333332 3489999999999999999999
Q ss_pred eEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHH
Q psy16310 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1130 VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
|||||+|+++||||+.|+.||.||.-.++...+||.|| ||+ +.|.++++++..+...+...
T Consensus 477 vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~~E~~ 537 (746)
T KOG0354|consen 477 VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIEFERN 537 (746)
T ss_pred EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHHHHHH
Confidence 99999999999999999999999999999999999999 998 57899999886666555443
No 147
>KOG0351|consensus
Probab=100.00 E-value=1.5e-31 Score=337.21 Aligned_cols=337 Identities=20% Similarity=0.247 Sum_probs=257.6
Q ss_pred HHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHH
Q psy16310 780 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 859 (1493)
Q Consensus 780 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (1493)
.-....+|...++|-|.++|. ++..|+|+++.+|||+||++||.||++-
T Consensus 254 ~~l~~~Fg~~~FR~~Q~eaI~-~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------------------------------ 302 (941)
T KOG0351|consen 254 LLLKEVFGHKGFRPNQLEAIN-ATLSGKDCFVLMPTGGGKSLCYQLPALL------------------------------ 302 (941)
T ss_pred HHHHHHhccccCChhHHHHHH-HHHcCCceEEEeecCCceeeEeeccccc------------------------------
Confidence 334455799999999999998 7779999999999999999999999872
Q ss_pred HHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---Hhc-C--CCcEEEEC
Q psy16310 860 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---ILN-K--CPHILVAT 933 (1493)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l~-~--~~~IlV~T 933 (1493)
.++.+|||.|...|+..+...+.. .++....+.++.....+.. .+. . ..+|+..|
T Consensus 303 ---------------~~gitvVISPL~SLm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvt 363 (941)
T KOG0351|consen 303 ---------------LGGVTVVISPLISLMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVT 363 (941)
T ss_pred ---------------cCCceEEeccHHHHHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 223699999999999988887744 3589999999988765433 232 2 46899999
Q ss_pred cHHHHHHHHhCcCccccccc---eeEEEecccchhccCCC--hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 934 PGRLWEFIQLGHFHLTELYK---INYLVIDETDRMIESGH--FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 934 P~rl~~~l~~~~~~~~~l~~---l~~lVlDEah~ll~~~~--~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+++...-.... .+..+.. +.++|+||||++.+||| ++.+..+-..... .+...++.+|||.+..+...+
T Consensus 364 PE~v~~~~~l~~-~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~---~~~vP~iALTATAT~~v~~DI- 438 (941)
T KOG0351|consen 364 PEKVVASEGLLE-SLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR---FPGVPFIALTATATERVREDV- 438 (941)
T ss_pred HHHhhcccchhh-HHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh---CCCCCeEEeehhccHHHHHHH-
Confidence 999864321100 1122334 88999999999999975 5555554433321 244789999999987766544
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHHhC--CCcEEEEec
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQH--PGRTLVFCN 1085 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~--~~~~IVF~~ 1085 (1493)
...+++..+.++.-. ....++.. .+.... ......+...+..+ ...+||||.
T Consensus 439 ---------------------i~~L~l~~~~~~~~s---fnR~NL~y-eV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~ 493 (941)
T KOG0351|consen 439 ---------------------IRSLGLRNPELFKSS---FNRPNLKY-EVSPKTDKDALLDILEESKLRHPDQSGIIYCL 493 (941)
T ss_pred ---------------------HHHhCCCCcceeccc---CCCCCceE-EEEeccCccchHHHHHHhhhcCCCCCeEEEeC
Confidence 344555555533211 01112211 122222 12222223333332 568999999
Q ss_pred chhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1086 s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
++..|+.++..|...|+.+..||++|+..+|..+...|..++++|+|||=++++|||.|+|+.||||.+|.+.+.|.|.+
T Consensus 494 sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~ 573 (941)
T KOG0351|consen 494 SRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEA 573 (941)
T ss_pred CcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecCCCHHHHHHHHHhc
Q psy16310 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196 (1493)
Q Consensus 1166 GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~ 1196 (1493)
|||||.|....|++|+...+...++.+...-
T Consensus 574 GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 574 GRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred cccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 9999999999999999999888888777654
No 148
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.7e-31 Score=339.18 Aligned_cols=354 Identities=25% Similarity=0.289 Sum_probs=261.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHH
Q psy16310 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854 (1493)
Q Consensus 775 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 854 (1493)
.+..+..++.+.|+..|.++|.+|+. .+..|+|+||+.+||||||++|++||+++++...
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~-~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------------------- 114 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALR-LIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------------------- 114 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHH-HHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-------------------
Confidence 45556888999999999999999996 7788999999999999999999999999997632
Q ss_pred HHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCC--cEEEEEEcCCCHHHHHHHhcCCCcEEEE
Q psy16310 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP--VKVACVVGGMSTEKQLRILNKCPHILVA 932 (1493)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~--~~v~~~~gg~~~~~~~~~l~~~~~IlV~ 932 (1493)
..++|||.||++||+.+.+.|+++...++ +.+....|+....+........|+||++
T Consensus 115 ---------------------~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllT 173 (851)
T COG1205 115 ---------------------SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLT 173 (851)
T ss_pred ---------------------CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEe
Confidence 23799999999999999999999988877 8888888988888777788889999999
Q ss_pred CcHHHHHHHHhCc-CccccccceeEEEecccchhccCCChhHHHHHHHHhccc--CCCCCceEEEEecccccchHhHHhh
Q psy16310 933 TPGRLWEFIQLGH-FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT--ETSQPRQTFVFSATLTHSLKNSLNL 1009 (1493)
Q Consensus 933 TP~rl~~~l~~~~-~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~--~~~~~~q~ll~SATl~~~~~~~~~~ 1009 (1493)
||.+|..++-+.. .....+.++++||+||+|.+ ...|+..+..++++|... .-+.+.|+++.|||+.+........
T Consensus 174 NpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l 252 (851)
T COG1205 174 NPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEEL 252 (851)
T ss_pred CHHHHHHHhccCcchHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHh
Confidence 9999988554333 33344678999999999964 445666666666665431 2235789999999998654332211
Q ss_pred hccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhh
Q psy16310 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 1089 (1493)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~ 1089 (1493)
. +......+... ........+........ ..... +.-........+...+...+-++|+|+.++..
T Consensus 253 ~-~~~f~~~v~~~----------g~~~~~~~~~~~~p~~~--~~~~~-~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~ 318 (851)
T COG1205 253 F-GRDFEVPVDED----------GSPRGLRYFVRREPPIR--ELAES-IRRSALAELATLAALLVRNGIQTLVFFRSRKQ 318 (851)
T ss_pred c-CCcceeeccCC----------CCCCCceEEEEeCCcch--hhhhh-cccchHHHHHHHHHHHHHcCceEEEEEehhhh
Confidence 1 10000000000 00000111100000000 00000 00111222334445555677899999999999
Q ss_pred HHHHH----HHHHhcC----CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC-ChhH
Q psy16310 1090 VKRLT----QLLTMLK----CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR-TSEI 1160 (1493)
Q Consensus 1090 ~~~l~----~~L~~~~----~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~-s~~~ 1160 (1493)
++.++ ..+...+ ..+..++|+|...+|.+++..|+.|++.++++|.+++-|+||-+++.||.+..|. +..+
T Consensus 319 ~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~ 398 (851)
T COG1205 319 VELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLS 398 (851)
T ss_pred hhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHH
Confidence 99997 4444445 5678899999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHHHhccCCCCCCCeEEEEecCC
Q psy16310 1161 YIHRSGRTARANNEGLTLVLIESD 1184 (1493)
Q Consensus 1161 yiqr~GR~gR~g~~G~~i~l~~~~ 1184 (1493)
|+||+||+||.++.+..+++...+
T Consensus 399 ~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 399 FRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred HHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999777777776643
No 149
>KOG0352|consensus
Probab=99.98 E-value=2.5e-31 Score=289.70 Aligned_cols=350 Identities=17% Similarity=0.282 Sum_probs=239.7
Q ss_pred HHHHHHHC-CCCC-ChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHH
Q psy16310 162 IIRALYQK-GFKT-PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 239 (1493)
Q Consensus 162 l~~~l~~~-g~~~-pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1493)
+.++|++. |+.+ -++.|..++..++.+.+||.|++|||+||+|+|.||.|-+
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------------------------- 60 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------------------------- 60 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------------------
Confidence 44555543 6655 3789999999888889999999999999999999998721
Q ss_pred HHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh------cCCCCEE
Q psy16310 240 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL------NKCPHIL 313 (1493)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l------~~~~~Ii 313 (1493)
+...||+.|..+|...+.+.+..+ .+.+..+...++..+..+.+ .....++
T Consensus 61 -------------------~gITIV~SPLiALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~L 117 (641)
T KOG0352|consen 61 -------------------GGITIVISPLIALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKML 117 (641)
T ss_pred -------------------CCeEEEehHHHHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEE
Confidence 236999999999999999999776 46666666666655543333 2345699
Q ss_pred EeCcHHHH-----HHHHcCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 314 VATPGRLW-----EFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 314 V~TP~~L~-----~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
..||+.-. .+|+. -.. -..++++|+||||++..|| |.+.+..+-....
T Consensus 118 YITPE~AAt~~FQ~lLn~-L~~---r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS--------------------- 172 (641)
T KOG0352|consen 118 YITPEGAATDGFQKLLNG-LAN---RDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS--------------------- 172 (641)
T ss_pred EEchhhhhhhhHHHHHHH-Hhh---hceeeeEEechhhhHhhhccccCcchhhhhhHHh---------------------
Confidence 99998642 22221 111 1147899999999999886 5555443332111
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
..+....+.++||.++.+.+-+. ..+....|..+.-+..+.
T Consensus 173 ----------~~~~vpwvALTATA~~~VqEDi~----------------------~qL~L~~PVAiFkTP~FR------- 213 (641)
T KOG0352|consen 173 ----------VCPGVPWVALTATANAKVQEDIA----------------------FQLKLRNPVAIFKTPTFR------- 213 (641)
T ss_pred ----------hCCCCceEEeecccChhHHHHHH----------------------HHHhhcCcHHhccCcchh-------
Confidence 12345789999999987765331 112222222111111110
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCc
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 546 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 546 (1493)
. .++|-+.... .+.+.+..+..+.. ..++-...+. +.-....|-
T Consensus 214 ----------~-NLFYD~~~K~--~I~D~~~~LaDF~~-------~~LG~~~~~~----------------~~~K~~~GC 257 (641)
T KOG0352|consen 214 ----------D-NLFYDNHMKS--FITDCLTVLADFSS-------SNLGKHEKAS----------------QNKKTFTGC 257 (641)
T ss_pred ----------h-hhhHHHHHHH--HhhhHhHhHHHHHH-------HhcCChhhhh----------------cCCCCcCcc
Confidence 0 0111110000 00000000000000 0000000000 000112367
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChH
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~ 626 (1493)
.||||.||+.|++++-.|...|+++..+|+|+...+|+.+.+.|.+|++.|++||..+++|+|-|+|+.|||+++|.|+.
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~A 337 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLA 337 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
.|.|..|||||.|.+.+|-++|+..|......+.
T Consensus 338 gYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 338 GYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred HHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999988776663
No 150
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=1.5e-30 Score=307.86 Aligned_cols=309 Identities=19% Similarity=0.180 Sum_probs=194.5
Q ss_pred HHHhhHHHhhccCC-cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhc
Q psy16310 794 IQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872 (1493)
Q Consensus 794 iQ~~~i~~~l~~~~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1493)
+|.++++.+..++. +++++||||||||++|++|++..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------------------------------------ 38 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------------------------------------ 38 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------------------------------------
Confidence 49999985554432 47889999999999999998741
Q ss_pred cCCCeEEEEEcccHHHHHHHHHHHHHhhCC----CCcEEEEEEcCCCHH--HH------------------HHHhcCCCc
Q psy16310 873 TRNKLYALILAPTRELAIQVQNHILDAGKY----TPVKVACVVGGMSTE--KQ------------------LRILNKCPH 928 (1493)
Q Consensus 873 ~~~~~~~lil~PTreLa~Q~~~~~~~~~~~----~~~~v~~~~gg~~~~--~~------------------~~~l~~~~~ 928 (1493)
..+++|++||++|+.|+++.++.+... .+..+..+.|....+ .. .......++
T Consensus 39 ---~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~ 115 (357)
T TIGR03158 39 ---ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPI 115 (357)
T ss_pred ---CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCC
Confidence 124899999999999999999987643 256666666653221 00 011134678
Q ss_pred EEEECcHHHHHHHHhCcCcc-----ccccceeEEEecccchhccCCChh-----HHHHHHHHhcccCCCCCceEEEEecc
Q psy16310 929 ILVATPGRLWEFIQLGHFHL-----TELYKINYLVIDETDRMIESGHFP-----ELKNILDRVTMTETSQPRQTFVFSAT 998 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~-----~~l~~l~~lVlDEah~ll~~~~~~-----~l~~il~~l~~~~~~~~~q~ll~SAT 998 (1493)
|+++||+.|..++....... ..+..+++|||||+|.+..++... ....++... ....+++++|||
T Consensus 116 illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~i~lSAT 190 (357)
T TIGR03158 116 ILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF-----ECRRKFVFLSAT 190 (357)
T ss_pred EEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhh-----hcCCcEEEEecC
Confidence 99999999876665322111 124689999999999976543211 222222222 134699999999
Q ss_pred cccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccc---ccccccceeeEEEecccchhhHH---HHH
Q psy16310 999 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK---IGITKTLTESKILCKHDEKDSYL---YYF 1072 (1493)
Q Consensus 999 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l---~~~ 1072 (1493)
++..+...+..............+. .+ .....+....-... ..+...+...+.. ....+...+ ...
T Consensus 191 ~~~~~~~~l~~~~~~~~~~~~v~g~-~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~ 262 (357)
T TIGR03158 191 PDPALILRLQNAKQAGVKIAPIDGE-KY------QFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEE 262 (357)
T ss_pred CCHHHHHHHHhccccCceeeeecCc-cc------ccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHH
Confidence 9987666554221000000000000 00 00000000000000 0001122222222 222222222 222
Q ss_pred HH-----hCCCcEEEEecchhhHHHHHHHHHhcC--CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCC
Q psy16310 1073 IL-----QHPGRTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145 (1493)
Q Consensus 1073 l~-----~~~~~~IVF~~s~~~~~~l~~~L~~~~--~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~ 1145 (1493)
+. ..++++||||||+..++.++..|+..+ +.+..+||.|++.+|.++ ++..|||||++++||||+|.
T Consensus 263 i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~ 336 (357)
T TIGR03158 263 VIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKR 336 (357)
T ss_pred HHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCC
Confidence 21 235789999999999999999999865 567889999999998754 47899999999999999998
Q ss_pred ccEEEEecCCCChhHHHHHHhccC
Q psy16310 1146 IEHVIHYHVPRTSEIYIHRSGRTA 1169 (1493)
Q Consensus 1146 v~~VI~~d~p~s~~~yiqr~GR~g 1169 (1493)
+ +|| ++ |.+.++|+||+||+|
T Consensus 337 ~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 337 D-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred c-eEE-EC-CCCHHHHhhhcccCC
Confidence 7 666 55 899999999999997
No 151
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=333.73 Aligned_cols=359 Identities=25% Similarity=0.297 Sum_probs=264.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHH
Q psy16310 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 237 (1493)
Q Consensus 158 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (1493)
....+..++.+.|+..|+++|.+|+. .+.+|+|+||+.+||||||.+|++||++++++.
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~-~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~-------------------- 113 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALR-LIREGRNVVVTTGTGSGKTESFLLPILDHLLRD-------------------- 113 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHH-HHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC--------------------
Confidence 44456888899999999999999997 778899999999999999999999999999752
Q ss_pred HHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCC--eEEEEEEcCCCHHHHHHHhcCCCCEEEe
Q psy16310 238 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP--VKVACVVGGMSTEKQLRILNKCPHILVA 315 (1493)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~--i~v~~~~G~~~~~~~~~~l~~~~~IiV~ 315 (1493)
...++|+|.||++||+.|.+.|.++....+ +.+..++|++..........+.++||++
T Consensus 114 --------------------~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllT 173 (851)
T COG1205 114 --------------------PSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLT 173 (851)
T ss_pred --------------------cCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEe
Confidence 122699999999999999999999887777 8899999999988887888899999999
Q ss_pred CcHHHHHHHHcCCcc-ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccc
Q psy16310 316 TPGRLWEFIQLGHFH-LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394 (1493)
Q Consensus 316 TP~~L~~~l~~~~~~-~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1493)
+|.+|..++...+.. ...++++++||+||+|.. ...|+.++..+++++.....
T Consensus 174 NpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~------------------------- 227 (851)
T COG1205 174 NPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRLR------------------------- 227 (851)
T ss_pred CHHHHHHHhccCcchHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHHh-------------------------
Confidence 999998866544333 334667999999999965 56688888888887743311
Q ss_pred cCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccC
Q psy16310 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 474 (1493)
Q Consensus 395 ~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1493)
..+.+.|+|+.|||+.+.......+.. ......+ . ..
T Consensus 228 -~~~~~~q~i~~SAT~~np~e~~~~l~~-----------------------~~f~~~v--~-----------------~~ 264 (851)
T COG1205 228 -RYGSPLQIICTSATLANPGEFAEELFG-----------------------RDFEVPV--D-----------------ED 264 (851)
T ss_pred -ccCCCceEEEEeccccChHHHHHHhcC-----------------------Ccceeec--c-----------------CC
Confidence 114568999999999754332211100 0000000 0 00
Q ss_pred CcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecch
Q psy16310 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554 (1493)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~ 554 (1493)
....-..++....+.... ... .+......-...+...+...+-++|+|+.++
T Consensus 265 g~~~~~~~~~~~~p~~~~---------------------------~~~-~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr 316 (851)
T COG1205 265 GSPRGLRYFVRREPPIRE---------------------------LAE-SIRRSALAELATLAALLVRNGIQTLVFFRSR 316 (851)
T ss_pred CCCCCceEEEEeCCcchh---------------------------hhh-hcccchHHHHHHHHHHHHHcCceEEEEEehh
Confidence 000000000000000000 000 0001111223334445556678999999999
Q ss_pred hhHHHHH----HHHHhcC----CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCC-Ch
Q psy16310 555 SSVKRLT----QLLTMLK----CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR-TS 625 (1493)
Q Consensus 555 ~~a~~L~----~~L~~~~----~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~-s~ 625 (1493)
..++.+. ..+...+ ..+..++|+|...+|.++...|+.|+..++++|+.++-|+||.+++.||.++.|. +.
T Consensus 317 ~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~ 396 (851)
T COG1205 317 KQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSV 396 (851)
T ss_pred hhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchH
Confidence 9999986 4444444 5677899999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHHHhccccCCCCCeEEEEecCCcch
Q psy16310 626 EIYIHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 626 ~~yiQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
.+|+||+||+||.++.+..+.++..+...
T Consensus 397 ~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d 425 (851)
T COG1205 397 LSFRQRAGRAGRRGQESLVLVVLRSDPLD 425 (851)
T ss_pred HHHHHhhhhccCCCCCceEEEEeCCCccc
Confidence 99999999999999888888777744443
No 152
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=1.1e-29 Score=334.41 Aligned_cols=347 Identities=22% Similarity=0.277 Sum_probs=236.0
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
+.-+|+++|..++..++. + |+++++|||+|||++|++++...+.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~-~-n~lv~~ptG~GKT~~a~~~i~~~l~---------------------------------- 55 (773)
T PRK13766 12 NTIEARLYQQLLAATALK-K-NTLVVLPTGLGKTAIALLVIAERLH---------------------------------- 55 (773)
T ss_pred CcCCccHHHHHHHHHHhc-C-CeEEEcCCCccHHHHHHHHHHHHHH----------------------------------
Confidence 445889999999976653 3 9999999999999999998887651
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
..+.++|||+||++|+.|+.+.++.++...+..+..++|+.+....... ....+|+|+||+.+...+..+..
T Consensus 56 -------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~-~~~~~iiv~T~~~l~~~l~~~~~ 127 (773)
T PRK13766 56 -------KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAEL-WEKAKVIVATPQVIENDLIAGRI 127 (773)
T ss_pred -------hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHH-HhCCCEEEECHHHHHHHHHcCCC
Confidence 1234799999999999999999999765555688888888876654333 34569999999999887765543
Q ss_pred ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCc--Ccccc-----
Q psy16310 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS--KSKKV----- 1019 (1493)
Q Consensus 947 ~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~--~~~~~----- 1019 (1493)
.+.++++|||||||++........+...+... .....+++||||+............... .....
T Consensus 128 ---~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~-----~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~ 199 (773)
T PRK13766 128 ---SLEDVSLLIFDEAHRAVGNYAYVYIAERYHED-----AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDP 199 (773)
T ss_pred ---ChhhCcEEEEECCccccccccHHHHHHHHHhc-----CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCCh
Confidence 35578999999999987654333333222211 2456799999998543221111000000 00000
Q ss_pred ---------------cCCCchhHHHHhH--------------hccCCCcE--Eecc--------------cccc------
Q psy16310 1020 ---------------SKGDPSIKRLQDL--------------LNIKSPKI--VDLT--------------EKIG------ 1048 (1493)
Q Consensus 1020 ---------------~~~~~~~~~l~~~--------------~~~~~~~~--~~~~--------------~~~~------ 1048 (1493)
......+..+... .+...+.. +... ....
T Consensus 200 ~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 279 (773)
T PRK13766 200 DVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAI 279 (773)
T ss_pred hHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 0000000000000 00000000 0000 0000
Q ss_pred ---------------------------------cc-------------------ccceeeEEEecccchhhHHHHHHHh-
Q psy16310 1049 ---------------------------------IT-------------------KTLTESKILCKHDEKDSYLYYFILQ- 1075 (1493)
Q Consensus 1049 ---------------------------------~~-------------------~~~~~~~~~~~~~~k~~~l~~~l~~- 1075 (1493)
.. ..+...........|...|..++..
T Consensus 280 ~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~ 359 (773)
T PRK13766 280 SILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQ 359 (773)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Confidence 00 0000000001123455555555543
Q ss_pred ----CCCcEEEEecchhhHHHHHHHHHhcCCCccccccC--------CCHHHHHHHHHHHhcCCCCeEEeehhhhccccC
Q psy16310 1076 ----HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS--------MNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143 (1493)
Q Consensus 1076 ----~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~--------m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDi 1143 (1493)
.++++||||+++.+|+.|+..|...|+.+..+||. |++.+|..++++|++|+.+|||||+++++|+|+
T Consensus 360 ~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi 439 (773)
T PRK13766 360 LGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDI 439 (773)
T ss_pred HhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCc
Confidence 36799999999999999999999999998888886 999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1144 p~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
|++++||+||+|.+...|+||+||+||.| .|.+++++..+..
T Consensus 440 ~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 440 PSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 99999999999999999999999999986 4888988876654
No 153
>KOG0951|consensus
Probab=99.97 E-value=5.4e-30 Score=310.97 Aligned_cols=380 Identities=20% Similarity=0.282 Sum_probs=281.7
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHH
Q psy16310 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 852 (1493)
Q Consensus 773 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 852 (1493)
..+|.+-..++. |...+.++|....+.++....++++|||||+|||.++++-|++.+-......
T Consensus 294 selP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~d-------------- 357 (1674)
T KOG0951|consen 294 SELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRED-------------- 357 (1674)
T ss_pred cCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccc--------------
Confidence 345666666664 7777999999999999988899999999999999999999999885433210
Q ss_pred HHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEE
Q psy16310 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 932 (1493)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~ 932 (1493)
.+......+++|++|+.+||..+...|.+....++++|.-.+|+.....+.- .+..|+||
T Consensus 358 -----------------gs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~ 417 (1674)
T KOG0951|consen 358 -----------------GSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVT 417 (1674)
T ss_pred -----------------cceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEe
Confidence 0122345689999999999999999999999999999999999876443322 24589999
Q ss_pred CcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhccc--CCCCCceEEEEecccccchHhHHhhh
Q psy16310 933 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT--ETSQPRQTFVFSATLTHSLKNSLNLK 1010 (1493)
Q Consensus 933 TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~--~~~~~~q~ll~SATl~~~~~~~~~~~ 1010 (1493)
||+. ||.+.+........+-++++|+||.| |+.+..++.++.|+.+.... .+......+++|||+|+-..-
T Consensus 418 TPEK-~DiITRk~gdraY~qlvrLlIIDEIH-LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV----- 490 (1674)
T KOG0951|consen 418 TPEK-WDIITRKSGDRAYEQLVRLLIIDEIH-LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDV----- 490 (1674)
T ss_pred ccch-hhhhhcccCchhHHHHHHHHhhhhhh-hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhh-----
Confidence 9999 78887765555555568899999999 56667888998888876542 344578899999999954221
Q ss_pred ccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc-------hhhHHHHHHHhC--CCcEE
Q psy16310 1011 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-------KDSYLYYFILQH--PGRTL 1081 (1493)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------k~~~l~~~l~~~--~~~~I 1081 (1493)
...+....+.++..... ..+-.+.+.++-+...+ -....+.-+..+ .+++|
T Consensus 491 -------------------~~Fl~v~~~glf~fd~s-yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVL 550 (1674)
T KOG0951|consen 491 -------------------ASFLRVDPEGLFYFDSS-YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVL 550 (1674)
T ss_pred -------------------HHHhccCcccccccCcc-cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 11112222222222111 12223333333322211 122344444444 46899
Q ss_pred EEecchhhHHHHHHHHHhc-------------------------------------CCCccccccCCCHHHHHHHHHHHh
Q psy16310 1082 VFCNSISSVKRLTQLLTML-------------------------------------KCSPLPLHASMNQRQRLKNLDRFR 1124 (1493)
Q Consensus 1082 VF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~m~~~~R~~~~~~F~ 1124 (1493)
|||.+++.+-..|..++.. .+++++||+||+..+|..+.+.|+
T Consensus 551 VFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~ 630 (1674)
T KOG0951|consen 551 VFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFA 630 (1674)
T ss_pred EEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHh
Confidence 9999999988888777521 357788999999999999999999
Q ss_pred cCCCCeEEeehhhhccccCCCccEEEE----ecC------CCChhHHHHHHhccCCCC--CCCeEEEEecCCCHHHHHHH
Q psy16310 1125 DQNNSILLATDVAARGLDIPGIEHVIH----YHV------PRTSEIYIHRSGRTARAN--NEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1125 ~g~~~VLVaTdv~~~GiDip~v~~VI~----~d~------p~s~~~yiqr~GR~gR~g--~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
.|.++|||+|-.+++|+++|+.+++|- ||+ +.++.+-+||.||+||.+ ..|.++++-...|...+..+
T Consensus 631 ~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~ 710 (1674)
T KOG0951|consen 631 DGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSL 710 (1674)
T ss_pred cCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHh
Confidence 999999999999999999999888883 665 357889999999999984 56888888888898888887
Q ss_pred HHhccccCCCCCCCCChHHHHHHHHHHHHHH
Q psy16310 1193 FNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223 (1493)
Q Consensus 1193 ~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~ 1223 (1493)
++. .+|+++..+..+-.-+++..
T Consensus 711 mn~--------qLpiesq~~~rl~d~lnaei 733 (1674)
T KOG0951|consen 711 MNQ--------QLPIESQFVSRLADCLNAEI 733 (1674)
T ss_pred hhh--------cCCChHHHHHHhhhhhhhhh
Confidence 765 67899887776666555443
No 154
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=1.5e-29 Score=299.18 Aligned_cols=363 Identities=19% Similarity=0.227 Sum_probs=256.8
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHhhHHHhhcc-----CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 774 NIPETIIRAL-YQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 774 ~l~~~l~~~l-~~~g~~~pt~iQ~~~i~~~l~~-----~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.....+++.+ ..+.| ++|..|..++..+..+ ..+-+++|..|||||+++++.++..+
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai---------------- 308 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI---------------- 308 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH----------------
Confidence 3444555554 55566 7999999999876532 24679999999999999999999876
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---Hhc
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---ILN 924 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l~ 924 (1493)
..|.++..++||--||.|+++.+.+++..++++|..++|......... .+.
T Consensus 309 --------------------------~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~ 362 (677)
T COG1200 309 --------------------------EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLA 362 (677)
T ss_pred --------------------------HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHh
Confidence 345689999999999999999999999999999999999876554333 333
Q ss_pred -CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCC-CceEEEEecccccc
Q psy16310 925 -KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ-PRQTFVFSATLTHS 1002 (1493)
Q Consensus 925 -~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~-~~q~ll~SATl~~~ 1002 (1493)
...+|+|||+.-+.+- -.|+++.++|+||-|| |+-.-+..+..- .. ...+++||||+-+.
T Consensus 363 ~G~~~ivVGTHALiQd~--------V~F~~LgLVIiDEQHR-----FGV~QR~~L~~K-----G~~~Ph~LvMTATPIPR 424 (677)
T COG1200 363 SGEIDIVVGTHALIQDK--------VEFHNLGLVIIDEQHR-----FGVHQRLALREK-----GEQNPHVLVMTATPIPR 424 (677)
T ss_pred CCCCCEEEEcchhhhcc--------eeecceeEEEEecccc-----ccHHHHHHHHHh-----CCCCCcEEEEeCCCchH
Confidence 3489999998765433 2478899999999999 443444444332 12 46799999997533
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccccccc-ccceeeEEEecccchhhHHHHHHHh---CCC
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT-KTLTESKILCKHDEKDSYLYYFILQ---HPG 1078 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~l~~~l~~---~~~ 1078 (1493)
..... ..+ .-.++........ ..+.. .+-..++...++.++.. .+.
T Consensus 425 TLAlt--~fg-------------------------DldvS~IdElP~GRkpI~T---~~i~~~~~~~v~e~i~~ei~~Gr 474 (677)
T COG1200 425 TLALT--AFG-------------------------DLDVSIIDELPPGRKPITT---VVIPHERRPEVYERIREEIAKGR 474 (677)
T ss_pred HHHHH--Hhc-------------------------cccchhhccCCCCCCceEE---EEeccccHHHHHHHHHHHHHcCC
Confidence 22111 000 0001111111111 11211 12222444444555443 478
Q ss_pred cEEEEecchh--------hHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccE
Q psy16310 1079 RTLVFCNSIS--------SVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148 (1493)
Q Consensus 1079 ~~IVF~~s~~--------~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~ 1148 (1493)
++.|.|+-++ .|..++..|+.. ++.+..+||.|+..++..+|.+|++|+++|||||.|++.|||+|+.++
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATv 554 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATV 554 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeE
Confidence 9999999765 455667777744 556899999999999999999999999999999999999999999999
Q ss_pred EEEecCCC-ChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy16310 1149 VIHYHVPR-TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEY 1227 (1493)
Q Consensus 1149 VI~~d~p~-s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~ 1227 (1493)
.|.+++-+ ...+.-|-.||+||.+.+++|++++.+.....- ++|+.. +..
T Consensus 555 MVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a--------------------------~~RL~i---m~~ 605 (677)
T COG1200 555 MVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVA--------------------------KQRLKI---MRE 605 (677)
T ss_pred EEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhH--------------------------HHHHHH---HHh
Confidence 99999876 456666677999999999999999977652211 111111 112
Q ss_pred HHHhhhccCCchHHHHHhhhhhhcccccc
Q psy16310 1228 LESKIKKNRPDNWLHRSGRTARANNEGLT 1256 (1493)
Q Consensus 1228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1256 (1493)
-..++..+..|.-+|+-|...+..|+|.+
T Consensus 606 t~DGF~IAE~DLklRGpGe~lG~rQSG~~ 634 (677)
T COG1200 606 TTDGFVIAEEDLKLRGPGELLGTRQSGLP 634 (677)
T ss_pred cCCcceehhhhHhccCCccccCCcccCCc
Confidence 22345555677888999999999999943
No 155
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.9e-28 Score=310.95 Aligned_cols=321 Identities=18% Similarity=0.187 Sum_probs=211.4
Q ss_pred CCCcHHHHhhHHHhhcc--CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 789 KTPTKIQSMVMPSALLA--RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~--~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
..+|+.|.++++.++.+ ++++++.|+||||||.+|+.++...+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~---------------------------------- 188 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA---------------------------------- 188 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH----------------------------------
Confidence 36899999999866542 578999999999999999988776552
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH----HhcCCCcEEEECcHHHHHHHH
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR----ILNKCPHILVATPGRLWEFIQ 942 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~----~l~~~~~IlV~TP~rl~~~l~ 942 (1493)
.+.++|||+||++|+.|+++.+++.+ +.++..++|+.+...... .....++|+||||+.+.
T Consensus 189 --------~g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---- 253 (679)
T PRK05580 189 --------QGKQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---- 253 (679)
T ss_pred --------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----
Confidence 23479999999999999999998753 578999999988755433 23346799999998863
Q ss_pred hCcCccccccceeEEEecccchhccCCC---hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccc
Q psy16310 943 LGHFHLTELYKINYLVIDETDRMIESGH---FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 1019 (1493)
Q Consensus 943 ~~~~~~~~l~~l~~lVlDEah~ll~~~~---~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~ 1019 (1493)
..+.++++||+||+|....++. .-....+.... ....+.+++++|||++......+. .+.......
T Consensus 254 ------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r---a~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l 322 (679)
T PRK05580 254 ------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR---AKLENIPVVLGSATPSLESLANAQ--QGRYRLLRL 322 (679)
T ss_pred ------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHH---hhccCCCEEEEcCCCCHHHHHHHh--ccceeEEEe
Confidence 2366889999999998654322 11122221111 113578999999998744332221 110000000
Q ss_pred cCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH---hCCCcEEEEecch---------
Q psy16310 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFCNSI--------- 1087 (1493)
Q Consensus 1020 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IVF~~s~--------- 1087 (1493)
.... ....+....+++..... .. .....-...++..+. ..+.++|||+|++
T Consensus 323 ~~r~-------~~~~~p~v~~id~~~~~------~~----~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~ 385 (679)
T PRK05580 323 TKRA-------GGARLPEVEIIDMRELL------RG----ENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCR 385 (679)
T ss_pred cccc-------ccCCCCeEEEEechhhh------hh----cccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhh
Confidence 0000 00000000111110000 00 000000112222222 3355777777652
Q ss_pred ---------------------------------------------------hhHHHHHHHHHhc--CCCccccccCCCH-
Q psy16310 1088 ---------------------------------------------------SSVKRLTQLLTML--KCSPLPLHASMNQ- 1113 (1493)
Q Consensus 1088 ---------------------------------------------------~~~~~l~~~L~~~--~~~~~~lhg~m~~- 1113 (1493)
..++.+++.|... +.++..+|+++.+
T Consensus 386 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~ 465 (679)
T PRK05580 386 DCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRR 465 (679)
T ss_pred hCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEecccccc
Confidence 2456778888776 7788999999974
Q ss_pred -HHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec--CCCC----------hhHHHHHHhccCCCCCCCeEEEE
Q psy16310 1114 -RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH--VPRT----------SEIYIHRSGRTARANNEGLTLVL 1180 (1493)
Q Consensus 1114 -~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d--~p~s----------~~~yiqr~GR~gR~g~~G~~i~l 1180 (1493)
.+++.+++.|++|+.+|||+|+++++|+|+|+|++|+.+| .+-+ ...|+|++||+||++..|.+++.
T Consensus 466 ~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 466 KGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred chhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 5789999999999999999999999999999999996554 4432 36799999999999999999987
Q ss_pred ecCCCH
Q psy16310 1181 IESDEI 1186 (1493)
Q Consensus 1181 ~~~~e~ 1186 (1493)
....+.
T Consensus 546 T~~p~~ 551 (679)
T PRK05580 546 TYHPEH 551 (679)
T ss_pred eCCCCC
Confidence 654443
No 156
>KOG0351|consensus
Probab=99.97 E-value=7.1e-30 Score=322.05 Aligned_cols=337 Identities=20% Similarity=0.239 Sum_probs=246.5
Q ss_pred HHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHH
Q psy16310 164 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 243 (1493)
Q Consensus 164 ~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1493)
-.....|+..+++-|.++|. +++.|+|+++.+|||.||+++|.||++-
T Consensus 255 ~l~~~Fg~~~FR~~Q~eaI~-~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------------------------------- 302 (941)
T KOG0351|consen 255 LLKEVFGHKGFRPNQLEAIN-ATLSGKDCFVLMPTGGGKSLCYQLPALL------------------------------- 302 (941)
T ss_pred HHHHHhccccCChhHHHHHH-HHHcCCceEEEeecCCceeeEeeccccc-------------------------------
Confidence 33455699999999999998 7779999999999999999999999861
Q ss_pred HhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHH---HHHhcC---CCCEEEeCc
Q psy16310 244 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ---LRILNK---CPHILVATP 317 (1493)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~---~~~l~~---~~~IiV~TP 317 (1493)
.++..|||.|.+.|+..|...+.. .+|....+.++.....+ ++.+.. ..+|+..||
T Consensus 303 --------------~~gitvVISPL~SLm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 303 --------------LGGVTVVISPLISLMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred --------------cCCceEEeccHHHHHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 223699999999999988887733 37889999999887644 333333 468999999
Q ss_pred HHHHHHHHcCCcccccccc---ccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhc
Q psy16310 318 GRLWEFIQLGHFHLTELYK---INYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392 (1493)
Q Consensus 318 ~~L~~~l~~~~~~~~~l~~---i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (1493)
+.+...-... ..+..|.. +.++||||||+...|+ |.+.+..+......
T Consensus 365 E~v~~~~~l~-~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~-------------------------- 417 (941)
T KOG0351|consen 365 EKVVASEGLL-ESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR-------------------------- 417 (941)
T ss_pred HHhhcccchh-hHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh--------------------------
Confidence 9886422110 01112333 8999999999999986 56655554433221
Q ss_pred cccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhc
Q psy16310 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472 (1493)
Q Consensus 393 ~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1493)
.+...++.++||.+..+..-+ .+.+++..+.+.. .
T Consensus 418 -----~~~vP~iALTATAT~~v~~DI----------------------i~~L~l~~~~~~~------------------~ 452 (941)
T KOG0351|consen 418 -----FPGVPFIALTATATERVREDV----------------------IRSLGLRNPELFK------------------S 452 (941)
T ss_pred -----CCCCCeEEeehhccHHHHHHH----------------------HHHhCCCCcceec------------------c
Confidence 122689999999997765432 1222222222100 0
Q ss_pred cCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh--CCCcEEEE
Q psy16310 473 HDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ--HPGRTLVF 550 (1493)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~IIF 550 (1493)
...+.. ++|-+ ...........+...... ....+|||
T Consensus 453 sfnR~N-L~yeV----------------------------------------~~k~~~~~~~~~~~~~~~~~~~~s~IIY 491 (941)
T KOG0351|consen 453 SFNRPN-LKYEV----------------------------------------SPKTDKDALLDILEESKLRHPDQSGIIY 491 (941)
T ss_pred cCCCCC-ceEEE----------------------------------------EeccCccchHHHHHHhhhcCCCCCeEEE
Confidence 000000 00000 000000111111122222 24689999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 551 ~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
|.++.+|+.++..|...++++..||+||+..+|..+...|..++++|+|||=.++.|||.|+|+.||||.+|.+.+.|+|
T Consensus 492 C~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQ 571 (941)
T KOG0351|consen 492 CLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQ 571 (941)
T ss_pred eCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCeEEEEecCCcchhhhhhhhhh
Q psy16310 631 RSGRTARANNEGLTVVLIESDEIPLKTKFNLQE 663 (1493)
Q Consensus 631 R~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~~ 663 (1493)
-+|||||.|...+|++||...|......+....
T Consensus 572 E~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 572 EAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred hccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 999999999999999999999888777764433
No 157
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.9e-29 Score=310.75 Aligned_cols=329 Identities=15% Similarity=0.147 Sum_probs=218.4
Q ss_pred CCCcHHHHhhHHHhhccC--CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 789 KTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~--~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
..++|+|.+++..++..| +..++++|||+|||++.+..+. .+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l----------------------------------- 297 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV----------------------------------- 297 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----------------------------------
Confidence 468999999998766555 3789999999999999765433 22
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
+..+|||||+.+|+.||.+.|.++....+..+..++|+.... .....+|+|+|...+.....+...
T Consensus 298 ---------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~ 363 (732)
T TIGR00603 298 ---------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYE 363 (732)
T ss_pred ---------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchh
Confidence 124999999999999999999998655556677777753221 112358999999877533221100
Q ss_pred ---ccccc--cceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH--HhhhccCcCcccc
Q psy16310 947 ---HLTEL--YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS--LNLKKGQSKSKKV 1019 (1493)
Q Consensus 947 ---~~~~l--~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~--~~~~~~~~~~~~~ 1019 (1493)
.+..+ ..+++||+||||++.. ..+..++..+. ....+++|||+.+..... +....+. .+
T Consensus 364 ~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~------a~~RLGLTATP~ReD~~~~~L~~LiGP----~v 429 (732)
T TIGR00603 364 SEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQ------AHCKLGLTATLVREDDKITDLNFLIGP----KL 429 (732)
T ss_pred hhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcC------cCcEEEEeecCcccCCchhhhhhhcCC----ee
Confidence 01112 3578999999999854 34555665552 245799999997543221 1100110 00
Q ss_pred cCCCchhHHHHhHhccCCCcEEec----cccc----cccccceeeEEEecccchhhHHHHHHHh---CCCcEEEEecchh
Q psy16310 1020 SKGDPSIKRLQDLLNIKSPKIVDL----TEKI----GITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSIS 1088 (1493)
Q Consensus 1020 ~~~~~~~~~l~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IVF~~s~~ 1088 (1493)
....+..+...-.+.......+ .... .....-...........|...+..++.. .+.++||||+++.
T Consensus 430 --ye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~ 507 (732)
T TIGR00603 430 --YEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVF 507 (732)
T ss_pred --eecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHH
Confidence 0112222322222222222111 0000 0000000001112334555555445543 4679999999999
Q ss_pred hHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCCeEEeehhhhccccCCCccEEEEecCC-CChhHHHHHHh
Q psy16310 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSILLATDVAARGLDIPGIEHVIHYHVP-RTSEIYIHRSG 1166 (1493)
Q Consensus 1089 ~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g-~~~VLVaTdv~~~GiDip~v~~VI~~d~p-~s~~~yiqr~G 1166 (1493)
.+..++..| .+..+||++++.+|.+++++|+.| .+++||+|+++.+|||+|++++||+++.| .|...|+||+|
T Consensus 508 ~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlG 582 (732)
T TIGR00603 508 ALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLG 582 (732)
T ss_pred HHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhc
Confidence 999998887 245689999999999999999975 78999999999999999999999999998 59999999999
Q ss_pred ccCCCCCCCeE-------EEEecCCCHHH
Q psy16310 1167 RTARANNEGLT-------LVLIESDEIPL 1188 (1493)
Q Consensus 1167 R~gR~g~~G~~-------i~l~~~~e~~~ 1188 (1493)
|++|.+..|.+ |.|++++..+.
T Consensus 583 RilR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 583 RILRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred ccccCCCCCccccccceEEEEecCCchHH
Confidence 99999876665 88888876543
No 158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=5.4e-29 Score=294.66 Aligned_cols=310 Identities=21% Similarity=0.207 Sum_probs=188.4
Q ss_pred HHHhhhhhhhccCC--cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhh
Q psy16310 177 IQSMVMPSALLARK--DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254 (1493)
Q Consensus 177 iQ~~~i~~~l~~~~--dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1493)
+|.++++ ++.++. +++++||||||||.+|++|++..
T Consensus 1 hQ~~~~~-~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----------------------------------------- 38 (357)
T TIGR03158 1 HQVATFE-ALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----------------------------------------- 38 (357)
T ss_pred CHHHHHH-HHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------------------------------------
Confidence 5999998 454544 37889999999999999998731
Q ss_pred cccCceEEEEEcccHHHHHHHHHHHHHhcCC----CCeEEEEEEcCCCHHHH-H-------------------HHhcCCC
Q psy16310 255 KTRNKLYALILAPTRELAIQVQNHILDAGKY----TPVKVACVVGGMSTEKQ-L-------------------RILNKCP 310 (1493)
Q Consensus 255 ~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~----~~i~v~~~~G~~~~~~~-~-------------------~~l~~~~ 310 (1493)
..+++|++||++|+.|+++.+..+... .++.+..+.|.+..... + ......+
T Consensus 39 ----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p 114 (357)
T TIGR03158 39 ----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTP 114 (357)
T ss_pred ----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCC
Confidence 124899999999999999998887632 35677777776332200 0 1112467
Q ss_pred CEEEeCcHHHHHHHHcCCccc-----cccccccEEEEecCchhhhcCChh-----hHHHHHHhhccccCCCccccccccC
Q psy16310 311 HILVATPGRLWEFIQLGHFHL-----TELYKINYLVIDETDRMIESGHFP-----ELKNILDRVTMTETSQPRQTMIESG 380 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~-----~~l~~i~~lViDEAh~ll~~~~~~-----~l~~il~~l~~~~~~~~~~~~~~~~ 380 (1493)
+|+++||+.|..++....... ..+.++++|||||+|.+-.++... ....++...
T Consensus 115 ~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~---------------- 178 (357)
T TIGR03158 115 IILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF---------------- 178 (357)
T ss_pred CEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhh----------------
Confidence 899999999976664322111 125689999999999875332211 111111111
Q ss_pred CcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcc
Q psy16310 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460 (1493)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1493)
....+++++|||+++.+...+..............+... ..
T Consensus 179 -----------------~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~----------------------~~ 219 (357)
T TIGR03158 179 -----------------ECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKY----------------------QF 219 (357)
T ss_pred -----------------hcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCccc----------------------cc
Confidence 112589999999998766554311000000000000000 00
Q ss_pred ccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhh-ccCCccccccccccccccccccccccccCchhh---HH
Q psy16310 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLN-IKSPKIVDLTEKIGITKTLTESKILCKHDEKDS---YL 536 (1493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~---~l 536 (1493)
. ..+ +....... ...+ +.......... ....+.. .+
T Consensus 220 ~------------------------~~~-----~~~~~~~~~~~~~----------~~~~i~~~~~~-~~~~~~~~l~~l 259 (357)
T TIGR03158 220 P------------------------DNP-----ELEADNKTQSFRP----------VLPPVELELIP-APDFKEEELSEL 259 (357)
T ss_pred C------------------------CCh-----hhhccccccccce----------eccceEEEEEe-CCchhHHHHHHH
Confidence 0 000 00000000 0000 00000000000 0011111 11
Q ss_pred H----HHHhh-CCCcEEEEecchhhHHHHHHHHHhcC--CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCC
Q psy16310 537 Y----YFILQ-HPGRTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 609 (1493)
Q Consensus 537 ~----~~l~~-~~~~~IIF~~s~~~a~~L~~~L~~~~--~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlD 609 (1493)
. ..+.. .++++||||+|+..++.++..|+..+ +.+..+||.+++.+|.++ ++..|||||++++||||
T Consensus 260 ~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiD 333 (357)
T TIGR03158 260 AEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVD 333 (357)
T ss_pred HHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccC
Confidence 1 22222 35689999999999999999999764 567889999999998654 47899999999999999
Q ss_pred CCCCcEEEEecCCCChHHHHHHHhccc
Q psy16310 610 IPGIEHVIHYHVPRTSEIYIHRSGRTA 636 (1493)
Q Consensus 610 ip~v~~VI~yd~P~s~~~yiQR~GRag 636 (1493)
||.+ +|| ++ |.+..+|+||+||||
T Consensus 334 i~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 334 FKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9987 666 56 899999999999987
No 159
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=5e-29 Score=321.06 Aligned_cols=297 Identities=22% Similarity=0.290 Sum_probs=199.0
Q ss_pred hhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCC
Q psy16310 797 MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876 (1493)
Q Consensus 797 ~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1493)
..|..++.+++.++++|+||||||. .+|.+...... ...
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~---------------------------------------g~~ 118 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR---------------------------------------GVK 118 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC---------------------------------------CCC
Confidence 3444577777788999999999999 57844321110 011
Q ss_pred eEEEEEcc----cHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccc
Q psy16310 877 LYALILAP----TRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951 (1493)
Q Consensus 877 ~~~lil~P----TreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l 951 (1493)
..+++.-| +++||.|+++.+.. ++...|..+ .. ..+ ...+++|+|+|||+|++.+.... .+
T Consensus 119 g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v----rf---~~~---~s~~t~I~v~TpG~LL~~l~~d~----~L 184 (1294)
T PRK11131 119 GLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV----RF---NDQ---VSDNTMVKLMTDGILLAEIQQDR----LL 184 (1294)
T ss_pred CceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee----cC---ccc---cCCCCCEEEEChHHHHHHHhcCC----cc
Confidence 12333345 67899999988865 443333222 11 111 13567999999999999987543 37
Q ss_pred cceeEEEecccc-hhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHH
Q psy16310 952 YKINYLVIDETD-RMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030 (1493)
Q Consensus 952 ~~l~~lVlDEah-~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1030 (1493)
.++++||||||| ++++.+|... ++..+.. ..++.|+++||||++.. .+...+.
T Consensus 185 s~~~~IIIDEAHERsLn~DfLLg---~Lk~lL~--~rpdlKvILmSATid~e--~fs~~F~------------------- 238 (1294)
T PRK11131 185 MQYDTIIIDEAHERSLNIDFILG---YLKELLP--RRPDLKVIITSATIDPE--RFSRHFN------------------- 238 (1294)
T ss_pred ccCcEEEecCccccccccchHHH---HHHHhhh--cCCCceEEEeeCCCCHH--HHHHHcC-------------------
Confidence 789999999999 6888887532 2222211 12468999999999732 2221110
Q ss_pred hHhccCCCcEEeccccccccccceeeEEEeccc------chhhHHHHHH----HhCCCcEEEEecchhhHHHHHHHHHhc
Q psy16310 1031 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHD------EKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTML 1100 (1493)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l----~~~~~~~IVF~~s~~~~~~l~~~L~~~ 1100 (1493)
+..++.+.... ..+...+...... +....++..+ ...++.+||||++...++.++..|...
T Consensus 239 ------~apvI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~ 309 (1294)
T PRK11131 239 ------NAPIIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKL 309 (1294)
T ss_pred ------CCCEEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhc
Confidence 11122222111 1122222222111 1122222221 234688999999999999999999987
Q ss_pred CCC---ccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec---------------CC---CChh
Q psy16310 1101 KCS---PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH---------------VP---RTSE 1159 (1493)
Q Consensus 1101 ~~~---~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d---------------~p---~s~~ 1159 (1493)
++. +.++||+|++.+|..+++. .|..+|||||+++++|||||+|++||+++ +| .|..
T Consensus 310 ~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSka 387 (1294)
T PRK11131 310 NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQA 387 (1294)
T ss_pred CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHh
Confidence 765 6789999999999999886 47889999999999999999999999986 33 4568
Q ss_pred HHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1160 IYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
+|+||+|||||. ..|.||.|+++.+.
T Consensus 388 sa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 388 SANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred hHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 999999999999 69999999987653
No 160
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=9.3e-29 Score=318.57 Aligned_cols=111 Identities=28% Similarity=0.465 Sum_probs=97.9
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhcCCC---ccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCS---PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 542 ~~~~~~IIF~~s~~~a~~L~~~L~~~~~~---~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
..++.+||||++..+++.+++.|...++. +..+||+|++.+|.++++. .|..+||||||++++|||||+|++||+
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEE
Confidence 34688999999999999999999987664 6789999999999999886 588999999999999999999999999
Q ss_pred ec---------------CC---CChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 619 YH---------------VP---RTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 619 yd---------------~P---~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
++ +| .|..+|+||+|||||. .+|.||.||++++...
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 86 34 4557899999999999 5999999999876543
No 161
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=3.1e-28 Score=299.99 Aligned_cols=339 Identities=14% Similarity=0.153 Sum_probs=212.0
Q ss_pred CCChHHHHhhhhhhhccC--CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 172 KTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~--~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
..++|||.+++..++.++ +..++++|||+|||++.+..+. .+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l----------------------------------- 297 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV----------------------------------- 297 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----------------------------------
Confidence 368999999998665444 3789999999999999765432 22
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCC-
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH- 328 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~- 328 (1493)
+.++|||||+..|+.|+.+.|..+.......+..++|+.... ......|+|+|++.+........
T Consensus 298 ---------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~ 363 (732)
T TIGR00603 298 ---------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYE 363 (732)
T ss_pred ---------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchh
Confidence 124999999999999999999988655556677777764321 11235899999998753221110
Q ss_pred --cccccc--ccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEE
Q psy16310 329 --FHLTEL--YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404 (1493)
Q Consensus 329 --~~~~~l--~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 404 (1493)
..+..| ..+++||+||||++-. .....++..+. ....+
T Consensus 364 ~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~----------------------------------a~~RL 405 (732)
T TIGR00603 364 SEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQ----------------------------------AHCKL 405 (732)
T ss_pred hhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcC----------------------------------cCcEE
Confidence 001112 2578999999999843 34445554431 12479
Q ss_pred EEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHH
Q psy16310 405 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484 (1493)
Q Consensus 405 l~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1493)
++|||+.+.-... ..+..++ .+......-. .+.....+.+.....
T Consensus 406 GLTATP~ReD~~~--------------------~~L~~Li---GP~vye~~~~-----eLi~~G~LA~~~~~e------- 450 (732)
T TIGR00603 406 GLTATLVREDDKI--------------------TDLNFLI---GPKLYEANWM-----ELQKKGFIANVQCAE------- 450 (732)
T ss_pred EEeecCcccCCch--------------------hhhhhhc---CCeeeecCHH-----HHHhCCccccceEEE-------
Confidence 9999996432110 0011111 1111000000 000000000000000
Q ss_pred hcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHH
Q psy16310 485 LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLT 561 (1493)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~ 561 (1493)
...+.. .+........... ...........|...+..++.. .+.++||||.+...+..++
T Consensus 451 v~v~~t--~~~~~~yl~~~~~---------------~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a 513 (732)
T TIGR00603 451 VWCPMT--PEFYREYLRENSR---------------KRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYA 513 (732)
T ss_pred EEecCC--HHHHHHHHHhcch---------------hhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHH
Confidence 000000 0000000000000 0000011123455555555543 4579999999999988888
Q ss_pred HHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCeEEEEechhhccCCCCCCcEEEEecCC-CChHHHHHHHhccccCC
Q psy16310 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSILLATDVAARGLDIPGIEHVIHYHVP-RTSEIYIHRSGRTARAN 639 (1493)
Q Consensus 562 ~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g-~~~VLVaTdv~~rGlDip~v~~VI~yd~P-~s~~~yiQR~GRagR~g 639 (1493)
..|. +..+||.+++.+|.++++.|+.| .+++||+|+++.+|||+|++++||+++.| .|...|+||+||++|.+
T Consensus 514 ~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~ 588 (732)
T TIGR00603 514 IKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAK 588 (732)
T ss_pred HHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCC
Confidence 8772 45689999999999999999975 88999999999999999999999999998 59999999999999998
Q ss_pred CCCeE-------EEEecCCcchh
Q psy16310 640 NEGLT-------VVLIESDEIPL 655 (1493)
Q Consensus 640 ~~G~~-------i~l~~~~e~~~ 655 (1493)
..|.+ |.|++++....
T Consensus 589 ~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 589 KGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred CCCccccccceEEEEecCCchHH
Confidence 77765 88888776544
No 162
>KOG0353|consensus
Probab=99.96 E-value=4.5e-28 Score=259.71 Aligned_cols=338 Identities=19% Similarity=0.258 Sum_probs=244.7
Q ss_pred cCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhH
Q psy16310 772 KFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 850 (1493)
Q Consensus 772 ~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~ 850 (1493)
+|+.+....+.|++ +..++++|.|..+|. +...|.|+++..|||.||++||.+|++..
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain-~~ma~ed~~lil~tgggkslcyqlpal~a-------------------- 133 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAIN-ATMAGEDAFLILPTGGGKSLCYQLPALCA-------------------- 133 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhh-hhhccCceEEEEeCCCccchhhhhhHHhc--------------------
Confidence 56677777777765 467889999999997 66688999999999999999999998842
Q ss_pred HHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---Hh-c--
Q psy16310 851 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---IL-N-- 924 (1493)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l-~-- 924 (1493)
...+||++|...|++.+.-.++.++ +....+....+.+...+ .+ .
T Consensus 134 -------------------------dg~alvi~plislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkd 184 (695)
T KOG0353|consen 134 -------------------------DGFALVICPLISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKD 184 (695)
T ss_pred -------------------------CCceEeechhHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCC
Confidence 2359999999999999888888875 66666666555443222 11 1
Q ss_pred CCCcEEEECcHHHHH---HHHhCcCccccccceeEEEecccchhccCCC--hhHHH--HHHHHhcccCCCCCceEEEEec
Q psy16310 925 KCPHILVATPGRLWE---FIQLGHFHLTELYKINYLVIDETDRMIESGH--FPELK--NILDRVTMTETSQPRQTFVFSA 997 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~---~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~--~~~l~--~il~~l~~~~~~~~~q~ll~SA 997 (1493)
....++..||+.+.. +|.+-... .....+.++-+||+|+-.+||+ .+++. .++.+- -++..+++++|
T Consensus 185 se~kliyvtpekiaksk~~mnkleka-~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrq-----f~~~~iiglta 258 (695)
T KOG0353|consen 185 SEFKLIYVTPEKIAKSKKFMNKLEKA-LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQ-----FKGAPIIGLTA 258 (695)
T ss_pred ceeEEEEecHHHHHHHHHHHHHHHHH-hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHh-----CCCCceeeeeh
Confidence 245799999999853 22111100 1233578999999999999985 44433 233332 26778999999
Q ss_pred ccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhH---HHHHHH
Q psy16310 998 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY---LYYFIL 1074 (1493)
Q Consensus 998 Tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---l~~~l~ 1074 (1493)
|.++.+......... +...+ .+......+ ++ .+.+.......... +..++.
T Consensus 259 tatn~vl~d~k~il~----------------ie~~~--------tf~a~fnr~-nl-~yev~qkp~n~dd~~edi~k~i~ 312 (695)
T KOG0353|consen 259 TATNHVLDDAKDILC----------------IEAAF--------TFRAGFNRP-NL-KYEVRQKPGNEDDCIEDIAKLIK 312 (695)
T ss_pred hhhcchhhHHHHHHh----------------HHhhh--------eeecccCCC-Cc-eeEeeeCCCChHHHHHHHHHHhc
Confidence 999876554421111 11111 111111111 11 11122222222222 222333
Q ss_pred hC--CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEe
Q psy16310 1075 QH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152 (1493)
Q Consensus 1075 ~~--~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~ 1152 (1493)
.. +...||||-++..++.++..|+.+|+.+..||+.|.+.+|.-+.+.|..|+++|+|||-++++|||-|+|+.|||.
T Consensus 313 ~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihh 392 (695)
T KOG0353|consen 313 GDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHH 392 (695)
T ss_pred cccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEec
Confidence 22 4568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHH-------------------------------------------HHhccCCCCCCCeEEEEecCCCHHHH
Q psy16310 1153 HVPRTSEIYIH-------------------------------------------RSGRTARANNEGLTLVLIESDEIPLY 1189 (1493)
Q Consensus 1153 d~p~s~~~yiq-------------------------------------------r~GR~gR~g~~G~~i~l~~~~e~~~~ 1189 (1493)
.+|.+++.|.| ..||+||.|.+..||+++.-.+....
T Consensus 393 sl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ 472 (695)
T KOG0353|consen 393 SLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKI 472 (695)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhH
Confidence 99999999999 78999999999999999876665544
Q ss_pred HH
Q psy16310 1190 IK 1191 (1493)
Q Consensus 1190 ~~ 1191 (1493)
..
T Consensus 473 ss 474 (695)
T KOG0353|consen 473 SS 474 (695)
T ss_pred HH
Confidence 43
No 163
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.95 E-value=5.4e-26 Score=288.61 Aligned_cols=366 Identities=17% Similarity=0.198 Sum_probs=209.9
Q ss_pred CChHHHHhhhhhhhcc--CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 173 TPTKIQSMVMPSALLA--RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~--~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
.+|++|.+++..++.+ +++++++|+||||||.+|+.++...+.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~----------------------------------- 188 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA----------------------------------- 188 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-----------------------------------
Confidence 5899999999855542 578999999999999999888766552
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH---H-hcCCCCEEEeCcHHHHHHHHc
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---I-LNKCPHILVATPGRLWEFIQL 326 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~---~-l~~~~~IiV~TP~~L~~~l~~ 326 (1493)
.+.++|||+||++|+.|+++.+.... +.++..++|+.+...... . ..+.++|+|+||+.+.
T Consensus 189 -------~g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----- 253 (679)
T PRK05580 189 -------QGKQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----- 253 (679)
T ss_pred -------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----
Confidence 23579999999999999999998753 578999999987654432 2 3455799999998873
Q ss_pred CCccccccccccEEEEecCchhhhcCC---hhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceE
Q psy16310 327 GHFHLTELYKINYLVIDETDRMIESGH---FPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403 (1493)
Q Consensus 327 ~~~~~~~l~~i~~lViDEAh~ll~~~~---~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 403 (1493)
..+.++++|||||+|...-.+. .-+...+.... ......++
T Consensus 254 -----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r-------------------------------a~~~~~~~ 297 (679)
T PRK05580 254 -----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR-------------------------------AKLENIPV 297 (679)
T ss_pred -----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHH-------------------------------hhccCCCE
Confidence 1355889999999997542211 11122221111 01345799
Q ss_pred EEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHH
Q psy16310 404 FVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 483 (1493)
Q Consensus 404 il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1493)
+++|||++......+ ..+... ...+....... ......+ .. ... .
T Consensus 298 il~SATps~~s~~~~--~~g~~~------------------------~~~l~~r~~~~-~~p~v~~-id--~~~-----~ 342 (679)
T PRK05580 298 VLGSATPSLESLANA--QQGRYR------------------------LLRLTKRAGGA-RLPEVEI-ID--MRE-----L 342 (679)
T ss_pred EEEcCCCCHHHHHHH--hcccee------------------------EEEeccccccC-CCCeEEE-Ee--chh-----h
Confidence 999999874432221 100000 00000000000 0000000 00 000 0
Q ss_pred HhcCCCcchhhHHHhhhhcc---CCcccccccccccccccccc----ccccccCc--------hhhHHHHHHhhC---C-
Q psy16310 484 ILQHPGRTLCEEIQDLLNIK---SPKIVDLTEKIGITKTLTES----KILCKHDE--------KDSYLYYFILQH---P- 544 (1493)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------k~~~l~~~l~~~---~- 544 (1493)
........+...+...+... ...+.-+....+....+.+. ...|..-. ...+.++..... +
T Consensus 343 ~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~ 422 (679)
T PRK05580 343 LRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPK 422 (679)
T ss_pred hhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCC
Confidence 00000000111111111100 00011111111111000000 00000000 000000000000 0
Q ss_pred ----CcEEEEecchhhHHHHHHHHHhc--CCCccccccCCCH--HHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEE
Q psy16310 545 ----GRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQ--RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616 (1493)
Q Consensus 545 ----~~~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~--~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~V 616 (1493)
-....|......++++.+.|... +.++..+|+++++ .++..+++.|++|+.+|||+|+++++|+|+|+|++|
T Consensus 423 ~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV 502 (679)
T PRK05580 423 ACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLV 502 (679)
T ss_pred CCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEE
Confidence 00122333345677888888776 7788999999874 578999999999999999999999999999999999
Q ss_pred EEe--cCCCC----------hHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 617 IHY--HVPRT----------SEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 617 I~y--d~P~s----------~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
+.+ |.+.+ ...|+|++||+||++..|.+++.....+-.....+
T Consensus 503 ~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 503 GVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred EEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 654 54433 36789999999999999999988766665555444
No 164
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=3.1e-26 Score=280.39 Aligned_cols=294 Identities=18% Similarity=0.212 Sum_probs=194.4
Q ss_pred EEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHH
Q psy16310 810 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889 (1493)
Q Consensus 810 lv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa 889 (1493)
++.||||||||++|+..+...+ ..+.++|||+|+++|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l------------------------------------------~~g~~vLvlvP~i~L~ 38 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL------------------------------------------ALGKSVLVLVPEIALT 38 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH------------------------------------------HcCCeEEEEeCcHHHH
Confidence 4689999999999976655443 1234799999999999
Q ss_pred HHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---H-hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchh
Q psy16310 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---I-LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 965 (1493)
Q Consensus 890 ~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~-l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~l 965 (1493)
.|+++.|++.+ +..+..++|+.+..+... . ....++|||||+..+. ..+.++++|||||+|..
T Consensus 39 ~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~ 105 (505)
T TIGR00595 39 PQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDS 105 (505)
T ss_pred HHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCcc
Confidence 99999998753 467888999887654322 2 2345799999998763 23668899999999987
Q ss_pred ccCCC------hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCC-C
Q psy16310 966 IESGH------FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-P 1038 (1493)
Q Consensus 966 l~~~~------~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 1038 (1493)
..++. ..++..+.... .+.+++++|||++.+....+ ..+.... ..+.....-.. +
T Consensus 106 sykq~~~p~y~ar~~a~~ra~~------~~~~vil~SATPsles~~~~--~~g~~~~----------~~l~~r~~~~~~p 167 (505)
T TIGR00595 106 SYKQEEGPRYHARDVAVYRAKK------FNCPVVLGSATPSLESYHNA--KQKAYRL----------LVLTRRVSGRKPP 167 (505)
T ss_pred ccccccCCCCcHHHHHHHHHHh------cCCCEEEEeCCCCHHHHHHH--hcCCeEE----------eechhhhcCCCCC
Confidence 64331 12233333332 56889999999764332221 1110000 00000000000 1
Q ss_pred --cEEeccccccccccceeeEEEecccchhhHHHHHH---HhCCCcEEEEecchhh------------------------
Q psy16310 1039 --KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISS------------------------ 1089 (1493)
Q Consensus 1039 --~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~~~~~~IVF~~s~~~------------------------ 1089 (1493)
.+++..... . ...-...++..+ ...++++|||+|++..
T Consensus 168 ~v~vid~~~~~------~-------~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~ 234 (505)
T TIGR00595 168 EVKLIDMRKEP------R-------QSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTY 234 (505)
T ss_pred eEEEEeccccc------c-------cCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEE
Confidence 111111000 0 000111233333 3346789999887643
Q ss_pred ------------------------------------HHHHHHHHHhc--CCCccccccCCCHHHH--HHHHHHHhcCCCC
Q psy16310 1090 ------------------------------------VKRLTQLLTML--KCSPLPLHASMNQRQR--LKNLDRFRDQNNS 1129 (1493)
Q Consensus 1090 ------------------------------------~~~l~~~L~~~--~~~~~~lhg~m~~~~R--~~~~~~F~~g~~~ 1129 (1493)
++++++.|... +.++..+|+++++..+ ..+++.|++|+.+
T Consensus 235 h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ 314 (505)
T TIGR00595 235 HKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD 314 (505)
T ss_pred ecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC
Confidence 47778888776 6788899999988766 8999999999999
Q ss_pred eEEeehhhhccccCCCccEEE--EecC----CC------ChhHHHHHHhccCCCCCCCeEEEEecCCCHHHH
Q psy16310 1130 ILLATDVAARGLDIPGIEHVI--HYHV----PR------TSEIYIHRSGRTARANNEGLTLVLIESDEIPLY 1189 (1493)
Q Consensus 1130 VLVaTdv~~~GiDip~v~~VI--~~d~----p~------s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~ 1189 (1493)
|||+|+++++|+|+|+|++|+ ++|. |. ....|+|++||+||+++.|.+++.....+...+
T Consensus 315 ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~ 386 (505)
T TIGR00595 315 ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAI 386 (505)
T ss_pred EEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHH
Confidence 999999999999999999986 5553 32 246789999999999999999876544443333
No 165
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=2.1e-26 Score=298.48 Aligned_cols=311 Identities=20% Similarity=0.243 Sum_probs=205.4
Q ss_pred CCCCCCcHHHH--hhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 786 KGFKTPTKIQS--MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 786 ~g~~~pt~iQ~--~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
..|...-|+.. ..|..++..+..+|++|+||||||. .+|.+..-..
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~------------------------------ 107 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG------------------------------ 107 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC------------------------------
Confidence 45555556655 4455677777888999999999998 4675532110
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCC-CHHHHHHHhcCCCcEEEECcHHHHHHHH
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGM-STEKQLRILNKCPHILVATPGRLWEFIQ 942 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~-~~~~~~~~l~~~~~IlV~TP~rl~~~l~ 942 (1493)
......+++.-|.|--|..++..+.... +..++..+|.. ....+ ......|.|+|||+|+..+.
T Consensus 108 ---------~~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~ 172 (1283)
T TIGR01967 108 ---------RGSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQ 172 (1283)
T ss_pred ---------CCCCceEecCCccHHHHHHHHHHHHHHh---CCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhh
Confidence 0112246666788877777766554422 33344444421 11111 13456899999999999887
Q ss_pred hCcCccccccceeEEEecccc-hhccCCChhH-HHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCccccc
Q psy16310 943 LGHFHLTELYKINYLVIDETD-RMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 1020 (1493)
Q Consensus 943 ~~~~~~~~l~~l~~lVlDEah-~ll~~~~~~~-l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~ 1020 (1493)
... .+.++++||||||| ++++.+|.-. +..++.. .+..++++||||+... .+...+..
T Consensus 173 ~d~----~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~------rpdLKlIlmSATld~~--~fa~~F~~-------- 232 (1283)
T TIGR01967 173 QDR----FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR------RPDLKIIITSATIDPE--RFSRHFNN-------- 232 (1283)
T ss_pred hCc----ccccCcEEEEcCcchhhccchhHHHHHHHHHhh------CCCCeEEEEeCCcCHH--HHHHHhcC--------
Confidence 543 36789999999999 6888777543 4444332 2468999999999732 22211110
Q ss_pred CCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc------cchhhHHHHH----HHhCCCcEEEEecchhhH
Q psy16310 1021 KGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH------DEKDSYLYYF----ILQHPGRTLVFCNSISSV 1090 (1493)
Q Consensus 1021 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~----l~~~~~~~IVF~~s~~~~ 1090 (1493)
..++.+..... .+...+..... .+....+... +...++.+|||+++...+
T Consensus 233 -----------------apvI~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI 292 (1283)
T TIGR01967 233 -----------------APIIEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREI 292 (1283)
T ss_pred -----------------CCEEEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHH
Confidence 11111111100 11111111110 1122222222 233578999999999999
Q ss_pred HHHHHHHHhcCC---CccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC------------
Q psy16310 1091 KRLTQLLTMLKC---SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP------------ 1155 (1493)
Q Consensus 1091 ~~l~~~L~~~~~---~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p------------ 1155 (1493)
+.++..|...+. .+.++||+|++.+|.++++.+ +..+|||||+++++|||||+|++||+++++
T Consensus 293 ~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~ 370 (1283)
T TIGR01967 293 RDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQ 370 (1283)
T ss_pred HHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcc
Confidence 999999987644 478899999999999986654 346899999999999999999999998854
Q ss_pred ------CChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1156 ------RTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1156 ------~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
.|..+|.||+|||||.| .|.||.|++..+.
T Consensus 371 ~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 371 RLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred ccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 35689999999999998 9999999976543
No 166
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.95 E-value=1.9e-25 Score=285.42 Aligned_cols=153 Identities=18% Similarity=0.307 Sum_probs=124.5
Q ss_pred cchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHH-HhcCCCccccccCCCHHHHHHHHHHHhcC--CCCeEEeehhhh
Q psy16310 1063 DEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLL-TMLKCSPLPLHASMNQRQRLKNLDRFRDQ--NNSILLATDVAA 1138 (1493)
Q Consensus 1063 ~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L-~~~~~~~~~lhg~m~~~~R~~~~~~F~~g--~~~VLVaTdv~~ 1138 (1493)
+.|...+..++... +.++||||+++..+..++..| ...|+.+..+||+|++.+|.++++.|+++ ..+|||||++++
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 34666777777655 679999999999999999999 46799999999999999999999999984 599999999999
Q ss_pred ccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCC--CCCChHHHHHH
Q psy16310 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD--FPIDESVLSLI 1215 (1493)
Q Consensus 1139 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~i 1215 (1493)
+|+|++.+++|||||+|.++..|+||+||+||.|+.|.+.+++...+...-..+..-+.....+-. .|....+....
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~ 636 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEF 636 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHH
Confidence 999999999999999999999999999999999999987777765554445555555555444333 33333444433
No 167
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=5.6e-26 Score=288.73 Aligned_cols=333 Identities=20% Similarity=0.224 Sum_probs=202.8
Q ss_pred CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 788 ~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
...|+|+|..+.. +...+.-+++.||||+|||.+++..+.. +...
T Consensus 284 ~~~p~p~Q~~~~~-~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~--------------------------------- 328 (878)
T PRK09694 284 GYQPRQLQTLVDA-LPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQ--------------------------------- 328 (878)
T ss_pred CCCChHHHHHHHh-hccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHh---------------------------------
Confidence 4589999998864 3334567899999999999998776553 3221
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC--CCcEEEEEEcCCCHHHHH---------------------HHhc
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY--TPVKVACVVGGMSTEKQL---------------------RILN 924 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~--~~~~v~~~~gg~~~~~~~---------------------~~l~ 924 (1493)
....+++|..||+++++|+++.+..+... ....+.+++|........ ..+.
T Consensus 329 ------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 402 (878)
T PRK09694 329 ------GLADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLS 402 (878)
T ss_pred ------CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHh
Confidence 12346999999999999999998864332 134677777754321110 1111
Q ss_pred ---C---CCcEEEECcHHHHHHHHhC-cCcccccc-ceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEe
Q psy16310 925 ---K---CPHILVATPGRLWEFIQLG-HFHLTELY-KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996 (1493)
Q Consensus 925 ---~---~~~IlV~TP~rl~~~l~~~-~~~~~~l~-~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~S 996 (1493)
+ -.+|+|||+..++..+-.. +..+..+. .-++|||||+|.+ +......+..++..+. .....++++|
T Consensus 403 ~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~----~~g~~vIllS 477 (878)
T PRK09694 403 QSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQA----QAGGSVILLS 477 (878)
T ss_pred hhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHH----hcCCcEEEEe
Confidence 1 1489999998887543221 11111110 1248999999975 3323344555555543 2346799999
Q ss_pred cccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccc---cccccceeeEEEecc-cchhhHHHHH
Q psy16310 997 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI---GITKTLTESKILCKH-DEKDSYLYYF 1072 (1493)
Q Consensus 997 ATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~k~~~l~~~ 1072 (1493)
||+|......+....+...........+.+ ..........+.+.... .....+.-....... ......+..+
T Consensus 478 ATLP~~~r~~L~~a~~~~~~~~~~~~YPlv----t~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i 553 (878)
T PRK09694 478 ATLPATLKQKLLDTYGGHDPVELSSAYPLI----TWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRM 553 (878)
T ss_pred CCCCHHHHHHHHHHhccccccccccccccc----cccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHH
Confidence 999987766543221110000000000000 00000000001111000 000001000000011 1111222222
Q ss_pred HH--hCCCcEEEEecchhhHHHHHHHHHhcC---CCccccccCCCHHHH----HHHHHHH-hcCC---CCeEEeehhhhc
Q psy16310 1073 IL--QHPGRTLVFCNSISSVKRLTQLLTMLK---CSPLPLHASMNQRQR----LKNLDRF-RDQN---NSILLATDVAAR 1139 (1493)
Q Consensus 1073 l~--~~~~~~IVF~~s~~~~~~l~~~L~~~~---~~~~~lhg~m~~~~R----~~~~~~F-~~g~---~~VLVaTdv~~~ 1139 (1493)
+. ..+++++|||||++.|+.++..|+..+ ..+..+||++++.+| .++++.| ++|+ ..|||||+++++
T Consensus 554 ~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~ 633 (878)
T PRK09694 554 IAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQ 633 (878)
T ss_pred HHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhh
Confidence 22 346789999999999999999999764 578999999999999 4577888 6666 479999999999
Q ss_pred cccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1140 GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
|||| +++++|....| .+.|+||+||+||.++
T Consensus 634 GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 634 SLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999 68999998888 6799999999999976
No 168
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=3.1e-26 Score=296.84 Aligned_cols=322 Identities=20% Similarity=0.274 Sum_probs=200.4
Q ss_pred CCCCCChHHHH--hhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 169 KGFKTPTKIQS--MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 169 ~g~~~pt~iQ~--~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
..|...-|+.. ..|..++.+++.+|++|+||||||.. +|.+- +...
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~l--le~~---------------------------- 107 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKIC--LELG---------------------------- 107 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHH--HHcC----------------------------
Confidence 34544455554 34445777788899999999999995 56442 1100
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHH-HHhcCCCCeEEEEEEcCC-CHHHHHHHhcCCCCEEEeCcHHHHHHH
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHI-LDAGKYTPVKVACVVGGM-STEKQLRILNKCPHILVATPGRLWEFI 324 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~-~~l~~~~~i~v~~~~G~~-~~~~~~~~l~~~~~IiV~TP~~L~~~l 324 (1493)
. ....++++.-|.|--|..+...+ .+++ ..++..+|.. ....+ ......|+|+|||+|++.+
T Consensus 108 --------~-~~~~~I~~tQPRRlAA~svA~RvA~elg----~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l 171 (1283)
T TIGR01967 108 --------R-GSHGLIGHTQPRRLAARTVAQRIAEELG----TPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAET 171 (1283)
T ss_pred --------C-CCCceEecCCccHHHHHHHHHHHHHHhC----CCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHh
Confidence 0 11235666778877777665544 3343 3333444421 11111 1345689999999999998
Q ss_pred HcCCccccccccccEEEEecCc-hhhhcCChhh-HHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCce
Q psy16310 325 QLGHFHLTELYKINYLVIDETD-RMIESGHFPE-LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402 (1493)
Q Consensus 325 ~~~~~~~~~l~~i~~lViDEAh-~ll~~~~~~~-l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 402 (1493)
..+. .|.++++||||||| ++++..+.-. +..++.. .+..|
T Consensus 172 ~~d~----~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~----------------------------------rpdLK 213 (1283)
T TIGR01967 172 QQDR----FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR----------------------------------RPDLK 213 (1283)
T ss_pred hhCc----ccccCcEEEEcCcchhhccchhHHHHHHHHHhh----------------------------------CCCCe
Confidence 7653 36789999999999 4777665432 3333221 23468
Q ss_pred EEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHH
Q psy16310 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482 (1493)
Q Consensus 403 ~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1493)
+|+||||+... .+... +. ...++.+.+... + ... +|
T Consensus 214 lIlmSATld~~--~fa~~-----------------------F~--~apvI~V~Gr~~-P--Vev--------------~Y 249 (1283)
T TIGR01967 214 IIITSATIDPE--RFSRH-----------------------FN--NAPIIEVSGRTY-P--VEV--------------RY 249 (1283)
T ss_pred EEEEeCCcCHH--HHHHH-----------------------hc--CCCEEEECCCcc-c--cee--------------EE
Confidence 99999999642 22111 00 000000000000 0 000 00
Q ss_pred HHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHH
Q psy16310 483 FILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 562 (1493)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~ 562 (1493)
......... . ... ....-...+..++...++.+|||+++..+++.+++
T Consensus 250 ~~~~~~~~~--~---------------------------~~~---~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~ 297 (1283)
T TIGR01967 250 RPLVEEQED--D---------------------------DLD---QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAE 297 (1283)
T ss_pred ecccccccc--h---------------------------hhh---HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHH
Confidence 000000000 0 000 00000112223333456899999999999999999
Q ss_pred HHHhcC---CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCC-----------------
Q psy16310 563 LLTMLK---CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP----------------- 622 (1493)
Q Consensus 563 ~L~~~~---~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P----------------- 622 (1493)
.|...+ +.+..+||+|++.+|.++++.+ +..+||||||++++|||||+|++||+++++
T Consensus 298 ~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~ 375 (1283)
T TIGR01967 298 ILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIE 375 (1283)
T ss_pred HHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCc
Confidence 998764 4578899999999999986654 347999999999999999999999999854
Q ss_pred -CChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 623 -RTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 623 -~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
.|..+|+||+|||||.| +|.||.||+..+...
T Consensus 376 ~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 376 PISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred cCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 35679999999999998 999999998876543
No 169
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.8e-25 Score=273.75 Aligned_cols=347 Identities=16% Similarity=0.207 Sum_probs=229.3
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.|.++|...-- +|..|+ |+.++||+|||++|.+|++...+.
T Consensus 82 ~~ydvQliGg~-~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~------------------------------------ 122 (896)
T PRK13104 82 RHFDVQLIGGM-VLHEGN--IAEMRTGEGKTLVATLPAYLNAIS------------------------------------ 122 (896)
T ss_pred CcchHHHhhhh-hhccCc--cccccCCCCchHHHHHHHHHHHhc------------------------------------
Confidence 67888888763 565553 889999999999999999976543
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhCc-Cc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLGH-FH 947 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~~-~~ 947 (1493)
+..++||+||++||.|.++.+..+..++++++++++||.+...+.... .+||+||||++| .|+|+.+. ..
T Consensus 123 ------G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~ 194 (896)
T PRK13104 123 ------GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFS 194 (896)
T ss_pred ------CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccc
Confidence 124899999999999999999999999999999999999887765544 579999999999 99998662 11
Q ss_pred cc--cccceeEEEecccchhccCC----------------ChhHHHHHHHHhcccC---------CCCCceEEEEecc--
Q psy16310 948 LT--ELYKINYLVIDETDRMIESG----------------HFPELKNILDRVTMTE---------TSQPRQTFVFSAT-- 998 (1493)
Q Consensus 948 ~~--~l~~l~~lVlDEah~ll~~~----------------~~~~l~~il~~l~~~~---------~~~~~q~ll~SAT-- 998 (1493)
+. ....+.++||||||.|+=+. .+..+..++..|.... .......+.++-.
T Consensus 195 ~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~ 274 (896)
T PRK13104 195 LTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGH 274 (896)
T ss_pred hHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHH
Confidence 11 12478999999999974221 1333344444443210 0011122222221
Q ss_pred ------------cc--------------cchHhHHhhh--ccCcCc---------------ccccCCC------------
Q psy16310 999 ------------LT--------------HSLKNSLNLK--KGQSKS---------------KKVSKGD------------ 1023 (1493)
Q Consensus 999 ------------l~--------------~~~~~~~~~~--~~~~~~---------------~~~~~~~------------ 1023 (1493)
++ +.+...+... +..... ..+..+.
T Consensus 275 ~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEa 354 (896)
T PRK13104 275 LHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEA 354 (896)
T ss_pred HHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHH
Confidence 00 0011111000 000000 0000000
Q ss_pred ---------------chhHHH---H---------------hHhccCCCcEEeccccccccccceeeEEEecccchhhHHH
Q psy16310 1024 ---------------PSIKRL---Q---------------DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 1070 (1493)
Q Consensus 1024 ---------------~~~~~l---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 1070 (1493)
-.+..+ + .+..+.+-.++.+.........-....+......|...++
T Consensus 355 KE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~ 434 (896)
T PRK13104 355 KEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAII 434 (896)
T ss_pred HcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHH
Confidence 000000 0 0011111111222111111111112233444556666666
Q ss_pred HHH---HhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCC--
Q psy16310 1071 YFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG-- 1145 (1493)
Q Consensus 1071 ~~l---~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~-- 1145 (1493)
..+ ...+.|+||||+|+..++.++..|...|++...+||.+.+.+|..+.+.|+.|. |+|||++++||+||.=
T Consensus 435 ~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lgg 512 (896)
T PRK13104 435 EDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGG 512 (896)
T ss_pred HHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCC
Confidence 555 345789999999999999999999999999999999999999999999999994 9999999999999951
Q ss_pred ------------------------------------ccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1146 ------------------------------------IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1146 ------------------------------------v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
=-|||--..+.|..-=-|-.||+||-|.+|.+-.|++-.|
T Consensus 513 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 513 SLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred chhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1267777778888888899999999999999999987654
No 170
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=6.1e-26 Score=280.80 Aligned_cols=416 Identities=16% Similarity=0.174 Sum_probs=249.7
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|.-.-- +|..| -|+.++||+|||++|++|++...+.
T Consensus 80 g~-~~ydvQliGg~-~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~--------------------------------- 122 (896)
T PRK13104 80 GL-RHFDVQLIGGM-VLHEG--NIAEMRTGEGKTLVATLPAYLNAIS--------------------------------- 122 (896)
T ss_pred CC-CcchHHHhhhh-hhccC--ccccccCCCCchHHHHHHHHHHHhc---------------------------------
Confidence 44 68889987663 56554 4889999999999999999865532
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcCC
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLGH 328 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~~ 328 (1493)
+..|+||+||++||.|.++++..+..++|+++++++|+.+...+.... .+||+|+||++| .++|..+.
T Consensus 123 ---------G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~ 191 (896)
T PRK13104 123 ---------GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNM 191 (896)
T ss_pred ---------CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCC
Confidence 234999999999999999999999999999999999998887765554 479999999999 99987652
Q ss_pred -cccc--ccccccEEEEecCchhhhcC-C---------------hhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 329 -FHLT--ELYKINYLVIDETDRMIESG-H---------------FPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 329 -~~~~--~l~~i~~lViDEAh~ll~~~-~---------------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
..+. ....+.++||||||.||=+. . +..+..+...+....... ...+
T Consensus 192 ~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~------~~~d-------- 257 (896)
T PRK13104 192 AFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEG------DEGD-------- 257 (896)
T ss_pred ccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccC------CCCC--------
Confidence 1111 12478999999999987321 1 112222222221110000 0000
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhcccc-ccccccCCC-chhhhHHhhh-----hccC-Cccc------c--
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS-KSKKVSKGD-PSIKRLQDLL-----NIKS-PKIV------D-- 453 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~-----~~~~-~~~~------~-- 453 (1493)
+.. ....+.+.++..=-..+..++....... ......... .....+...+ .... .+++ -
T Consensus 258 --y~i---dek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVD 332 (896)
T PRK13104 258 --YTI---DEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVD 332 (896)
T ss_pred --EEE---EcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEE
Confidence 000 0011122222211111111110000000 000000000 0001111110 0000 0000 0
Q ss_pred -hhhhhcccccc----chhh------hhhcc---CCcchhhHHHH----hcCCCcchhhHHHhhhhccCCcccccccccc
Q psy16310 454 -LTEKIGITKTL----TESK------ILCKH---DEKDSYLYYFI----LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515 (1493)
Q Consensus 454 -~~~~~~~~~~~----~~~~------~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1493)
.++.......+ .+.. .+... ...-.+..+|- ...-..+.......+...+.-.+..+.....
T Consensus 333 e~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp 412 (896)
T PRK13104 333 EHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRS 412 (896)
T ss_pred CCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCC
Confidence 00000000000 0000 00000 00011111111 1122233344445566666655555554444
Q ss_pred ccccccccccccccCchhhHHHHHHh---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc
Q psy16310 516 ITKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592 (1493)
Q Consensus 516 ~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~ 592 (1493)
.........++.....|...+...+. ..+.|+||||+|...++.|+.+|...|++...+|+.+.+.++..+.+.|+.
T Consensus 413 ~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~ 492 (896)
T PRK13104 413 MIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRP 492 (896)
T ss_pred cceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCC
Confidence 44444444555666677777766653 346799999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEechhhccCCCCC---------------------------------C-----cEEEEecCCCChHHHHHHHhc
Q psy16310 593 QNNSILLATDVAARGLDIPG---------------------------------I-----EHVIHYHVPRTSEIYIHRSGR 634 (1493)
Q Consensus 593 g~~~VLVaTdv~~rGlDip~---------------------------------v-----~~VI~yd~P~s~~~yiQR~GR 634 (1493)
|. |+|||++|+||+||.= | =+||-...+.|-.-=-|-.||
T Consensus 493 G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGR 570 (896)
T PRK13104 493 GA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGR 570 (896)
T ss_pred Cc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccc
Confidence 94 9999999999999951 1 178888888888888999999
Q ss_pred cccCCCCCeEEEEecCCcch
Q psy16310 635 TARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 635 agR~g~~G~~i~l~~~~e~~ 654 (1493)
+||-|.+|.+-.|++-+|--
T Consensus 571 aGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 571 AGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred cccCCCCCceEEEEEcCcHH
Confidence 99999999999999876643
No 171
>KOG0353|consensus
Probab=99.94 E-value=5.8e-26 Score=243.63 Aligned_cols=344 Identities=19% Similarity=0.259 Sum_probs=241.3
Q ss_pred cccCCCHHHHHHHHHC-CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccch
Q psy16310 154 VKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 232 (1493)
Q Consensus 154 ~~l~l~~~l~~~l~~~-g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 232 (1493)
++++.+....+.|++. ...+++|.|.++|. +...+.|+++..|||.||+++|.||++-
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain-~~ma~ed~~lil~tgggkslcyqlpal~-------------------- 132 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAIN-ATMAGEDAFLILPTGGGKSLCYQLPALC-------------------- 132 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhh-hhhccCceEEEEeCCCccchhhhhhHHh--------------------
Confidence 3577777877777654 67889999999997 6678899999999999999999999872
Q ss_pred HHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH---Hh-c-
Q psy16310 233 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---IL-N- 307 (1493)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~---~l-~- 307 (1493)
....+|+++|...|+..+.-.++.+ |+....+....+...-.. .+ .
T Consensus 133 -------------------------adg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nk 183 (695)
T KOG0353|consen 133 -------------------------ADGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNK 183 (695)
T ss_pred -------------------------cCCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCC
Confidence 1245999999999999988888887 566666666555433221 11 1
Q ss_pred -CCCCEEEeCcHHHHHH--HHcCCccccccccccEEEEecCchhhhcC--ChhhHH--HHHHhhccccCCCccccccccC
Q psy16310 308 -KCPHILVATPGRLWEF--IQLGHFHLTELYKINYLVIDETDRMIESG--HFPELK--NILDRVTMTETSQPRQTMIESG 380 (1493)
Q Consensus 308 -~~~~IiV~TP~~L~~~--l~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~--~il~~l~~~~~~~~~~~~~~~~ 380 (1493)
....+|..||+.+... +.+.--.......+.++-+||+|++..|| |.+.+. .|+++.
T Consensus 184 dse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrq---------------- 247 (695)
T KOG0353|consen 184 DSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQ---------------- 247 (695)
T ss_pred CceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHh----------------
Confidence 2346899999987531 11110001112246889999999999886 444432 233322
Q ss_pred CcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcc
Q psy16310 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460 (1493)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1493)
-+...+++++||.++.+..-. ++.+.+... +.+
T Consensus 248 -----------------f~~~~iigltatatn~vl~d~----------------------k~il~ie~~--------~tf 280 (695)
T KOG0353|consen 248 -----------------FKGAPIIGLTATATNHVLDDA----------------------KDILCIEAA--------FTF 280 (695)
T ss_pred -----------------CCCCceeeeehhhhcchhhHH----------------------HHHHhHHhh--------hee
Confidence 234579999999997764322 111111000 000
Q ss_pred ccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH
Q psy16310 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540 (1493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 540 (1493)
.. ......++|-+.+.|... +.-..-+..++
T Consensus 281 ~a-----------~fnr~nl~yev~qkp~n~--------------------------------------dd~~edi~k~i 311 (695)
T KOG0353|consen 281 RA-----------GFNRPNLKYEVRQKPGNE--------------------------------------DDCIEDIAKLI 311 (695)
T ss_pred ec-----------ccCCCCceeEeeeCCCCh--------------------------------------HHHHHHHHHHh
Confidence 00 000011111111111110 01111111222
Q ss_pred hh-C-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 541 LQ-H-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 541 ~~-~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
.. . +...||||-|+.+|+.++..|+..|+....+|+.|.+.++..+-+.|..|+++|+|||-.++.|||-|+|+.|||
T Consensus 312 ~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih 391 (695)
T KOG0353|consen 312 KGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH 391 (695)
T ss_pred ccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe
Confidence 21 1 346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChHHHHH-------------------------------------------HHhccccCCCCCeEEEEecCCcchh
Q psy16310 619 YHVPRTSEIYIH-------------------------------------------RSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 619 yd~P~s~~~yiQ-------------------------------------------R~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
..+|.|.+.|.| ..||+||.|.+..|+++|.-.|+..
T Consensus 392 hsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk 471 (695)
T KOG0353|consen 392 HSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFK 471 (695)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHh
Confidence 999999999999 7899999999999999998877665
Q ss_pred hhhh
Q psy16310 656 KTKF 659 (1493)
Q Consensus 656 ~~~l 659 (1493)
...+
T Consensus 472 ~ssm 475 (695)
T KOG0353|consen 472 ISSM 475 (695)
T ss_pred HHHH
Confidence 5444
No 172
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.3e-25 Score=276.70 Aligned_cols=152 Identities=16% Similarity=0.270 Sum_probs=129.4
Q ss_pred cccCCCHHHHHHHH-----HCCCCCC---hHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCcc
Q psy16310 154 VKFNIPETIIRALY-----QKGFKTP---TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225 (1493)
Q Consensus 154 ~~l~l~~~l~~~l~-----~~g~~~p---t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~ 225 (1493)
+.|++.+.+.+.+. ..||..| +|+|.+++| .+..++++|+.|+||+|||++|++|++..++.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~-~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------- 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILG-AIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------- 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhh-hhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------
Confidence 35788999988877 6899999 999999999 55567899999999999999999999977642
Q ss_pred CCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH
Q psy16310 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 305 (1493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~ 305 (1493)
+..++||+||++||.|+.+++..++.++++++++++||.+...+...
T Consensus 135 ---------------------------------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 135 ---------------------------------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred ---------------------------------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 11389999999999999999999999999999999999998888766
Q ss_pred hcCCCCEEEeCcHHH-HHHHHcCCccccc----cccccEEEEecCchhhh
Q psy16310 306 LNKCPHILVATPGRL-WEFIQLGHFHLTE----LYKINYLVIDETDRMIE 350 (1493)
Q Consensus 306 l~~~~~IiV~TP~~L-~~~l~~~~~~~~~----l~~i~~lViDEAh~ll~ 350 (1493)
+ .+||+||||++| .++|..+...... ...+.++||||||.||-
T Consensus 182 y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 182 Y--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred c--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 5 489999999999 9999876544331 23568999999999874
No 173
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=3.1e-24 Score=264.57 Aligned_cols=152 Identities=15% Similarity=0.268 Sum_probs=129.8
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---cHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcc
Q psy16310 771 VKFNIPETIIRALY-----QKGFKTP---TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842 (1493)
Q Consensus 771 ~~l~l~~~l~~~l~-----~~g~~~p---t~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~ 842 (1493)
+.|++...+.+.+. ..||..| ||+|.++||. +..+++++++++||+|||++|++|++..++..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~-i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-------- 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGA-IAMHKGFITEMQTGEGKTLTAVMPLYLNALTG-------- 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhh-hhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------
Confidence 46788998888877 6899999 9999999994 55678999999999999999999999876431
Q ss_pred cCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH
Q psy16310 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~ 922 (1493)
..++||+||++||.|+++.+..+++++++++.+++||.+...+...
T Consensus 136 ----------------------------------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 136 ----------------------------------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred ----------------------------------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 1389999999999999999999999999999999999999888766
Q ss_pred hcCCCcEEEECcHHH-HHHHHhCcCcccc----ccceeEEEecccchhcc
Q psy16310 923 LNKCPHILVATPGRL-WEFIQLGHFHLTE----LYKINYLVIDETDRMIE 967 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl-~~~l~~~~~~~~~----l~~l~~lVlDEah~ll~ 967 (1493)
+ .+||+|||||+| .++++.+...+.. ...+.++||||||.|+-
T Consensus 182 y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 182 Y--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred c--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 5 589999999999 9999877544331 23568999999999853
No 174
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=2.4e-25 Score=263.68 Aligned_cols=334 Identities=20% Similarity=0.241 Sum_probs=232.2
Q ss_pred CCCHHHHHH-HHHCCCCCChHHHHhhhhhhhcc-----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 157 NIPETIIRA-LYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 157 ~l~~~l~~~-l~~~g~~~pt~iQ~~~i~~~l~~-----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.....+++. +..+.| ++|..|+.++..+..+ ..+-++++..|||||+++++.++..+
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai---------------- 308 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI---------------- 308 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH----------------
Confidence 444555544 466788 6999999999865532 34678999999999999999999777
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH---Hhc
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---ILN 307 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~---~l~ 307 (1493)
..|.++..++||--||.|.++.+.++...++++|..++|......... .+.
T Consensus 309 --------------------------~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~ 362 (677)
T COG1200 309 --------------------------EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLA 362 (677)
T ss_pred --------------------------HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHh
Confidence 345789999999999999999999999999999999999977555433 333
Q ss_pred -CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 308 -KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 308 -~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
+..+|+|+|-.-+.+ .. .+.++.++|+||-|+.--. =+..+..-
T Consensus 363 ~G~~~ivVGTHALiQd-----~V---~F~~LgLVIiDEQHRFGV~-----QR~~L~~K---------------------- 407 (677)
T COG1200 363 SGEIDIVVGTHALIQD-----KV---EFHNLGLVIIDEQHRFGVH-----QRLALREK---------------------- 407 (677)
T ss_pred CCCCCEEEEcchhhhc-----ce---eecceeEEEEeccccccHH-----HHHHHHHh----------------------
Confidence 348999999877633 22 2558899999999987321 11111111
Q ss_pred hhhhhccccCCCC-CceEEEEeeccc-hhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcccccc
Q psy16310 387 NILDRVTMTETSQ-PRQTFVFSATLT-HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 464 (1493)
Q Consensus 387 ~~~~~~~~~~~~~-~~q~il~SATl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1493)
.. .+.+++||||+= +.+.-.+ .+|-.+..+
T Consensus 408 -----------G~~~Ph~LvMTATPIPRTLAlt~-------------fgDldvS~I------------------------ 439 (677)
T COG1200 408 -----------GEQNPHVLVMTATPIPRTLALTA-------------FGDLDVSII------------------------ 439 (677)
T ss_pred -----------CCCCCcEEEEeCCCchHHHHHHH-------------hccccchhh------------------------
Confidence 11 357899999963 2221100 000000000
Q ss_pred chhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh--
Q psy16310 465 TESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-- 542 (1493)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-- 542 (1493)
.. .+..-......+-...+...++.++..
T Consensus 440 --------------------dE-----------------------------lP~GRkpI~T~~i~~~~~~~v~e~i~~ei 470 (677)
T COG1200 440 --------------------DE-----------------------------LPPGRKPITTVVIPHERRPEVYERIREEI 470 (677)
T ss_pred --------------------cc-----------------------------CCCCCCceEEEEeccccHHHHHHHHHHHH
Confidence 00 000000000011112222333333322
Q ss_pred -CCCcEEEEecchh--------hHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCC
Q psy16310 543 -HPGRTLVFCNSIS--------SVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 611 (1493)
Q Consensus 543 -~~~~~IIF~~s~~--------~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip 611 (1493)
.+.++.|.|+-.+ .|..+++.|+.. +..++.+||.|+..++..++++|++|+++|||||.|.+.|+|+|
T Consensus 471 ~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 471 AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVP 550 (677)
T ss_pred HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCC
Confidence 3678888888765 445666777644 45689999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC-ChHHHHHHHhccccCCCCCeEEEEecCCc-chhhhhhhhhhcc
Q psy16310 612 GIEHVIHYHVPR-TSEIYIHRSGRTARANNEGLTVVLIESDE-IPLKTKFNLQEEE 665 (1493)
Q Consensus 612 ~v~~VI~yd~P~-s~~~yiQR~GRagR~g~~G~~i~l~~~~e-~~~~~~l~~~~~~ 665 (1493)
+.++.|.++.-+ ......|-.||+||.+..++|++++.+.. ..-..++..+.+.
T Consensus 551 nATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t 606 (677)
T COG1200 551 NATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRET 606 (677)
T ss_pred CCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhc
Confidence 999999998764 57778889999999999999999998877 4434444443333
No 175
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=6.5e-24 Score=263.21 Aligned_cols=350 Identities=18% Similarity=0.216 Sum_probs=235.6
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+++|.-.-- +|..|+ |+.++||+|||++|.+|++-..+.
T Consensus 78 lg~-~~~dvQlig~l-~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-------------------------------- 121 (830)
T PRK12904 78 LGM-RHFDVQLIGGM-VLHEGK--IAEMKTGEGKTLVATLPAYLNALT-------------------------------- 121 (830)
T ss_pred hCC-CCCccHHHhhH-HhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------------------------------
Confidence 354 68899998874 666663 899999999999999999633322
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~ 944 (1493)
+..+-|++||..||.|.++.+..+..++++++++++|+++...+.... .+||++|||++| .|+|+.+
T Consensus 122 ----------G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~ 189 (830)
T PRK12904 122 ----------GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDN 189 (830)
T ss_pred ----------CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcc
Confidence 123679999999999999999999999999999999999988776664 479999999999 8888765
Q ss_pred cCc-c--ccccceeEEEecccchhccCC----------------ChhHHHHHHHHhcccC--------------------
Q psy16310 945 HFH-L--TELYKINYLVIDETDRMIESG----------------HFPELKNILDRVTMTE-------------------- 985 (1493)
Q Consensus 945 ~~~-~--~~l~~l~~lVlDEah~ll~~~----------------~~~~l~~il~~l~~~~-------------------- 985 (1493)
... . ..++.+.++||||||.|+=+. .+..+..++..|....
T Consensus 190 ~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~ 269 (830)
T PRK12904 190 MVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEK 269 (830)
T ss_pred cccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHH
Confidence 321 1 124578999999999863211 1122222222221000
Q ss_pred ---------------------------------CC-----CCceEEEEe---------cccccchHhHHhhhccCcCccc
Q psy16310 986 ---------------------------------TS-----QPRQTFVFS---------ATLTHSLKNSLNLKKGQSKSKK 1018 (1493)
Q Consensus 986 ---------------------------------~~-----~~~q~ll~S---------ATl~~~~~~~~~~~~~~~~~~~ 1018 (1493)
.. .+-.++++- -+++..+.+.+..+-+......
T Consensus 270 ~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e 349 (830)
T PRK12904 270 AEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNE 349 (830)
T ss_pred HHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCC
Confidence 00 001112111 1122333444433222111100
Q ss_pred -ccCCC---chhHH---------------HHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh---C
Q psy16310 1019 -VSKGD---PSIKR---------------LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---H 1076 (1493)
Q Consensus 1019 -~~~~~---~~~~~---------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~ 1076 (1493)
..... .++.. -.....+.+-.++.+.........-....+.....+|...+...+.. .
T Consensus 350 ~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~ 429 (830)
T PRK12904 350 NQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKK 429 (830)
T ss_pred ceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhc
Confidence 00000 00000 01111222222333322221111111223444556677777777644 4
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCc----------
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI---------- 1146 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v---------- 1146 (1493)
+.++||||+|+..++.++..|...|++...+||. +.+|+..+..|+.+...|+|||++++||+||+==
T Consensus 430 grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~ 507 (830)
T PRK12904 430 GQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAAL 507 (830)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhh
Confidence 6799999999999999999999999999999996 8899999999999999999999999999999532
Q ss_pred ----------------------------cEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1147 ----------------------------EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1147 ----------------------------~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
-|||--..|.|..---|-.||+||-|.+|.+-.|++-.|
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 508 LEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 278888889999999999999999999999999987654
No 176
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=3.3e-25 Score=268.61 Aligned_cols=315 Identities=18% Similarity=0.183 Sum_probs=203.4
Q ss_pred CCCCcHHHHhhHHHhhcc---CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 788 FKTPTKIQSMVMPSALLA---RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 788 ~~~pt~iQ~~~i~~~l~~---~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
...|+|+|.+++..+... .+..++++|||+|||.+++..+-...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~--------------------------------- 80 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK--------------------------------- 80 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc---------------------------------
Confidence 346899999999855543 78999999999999998776554211
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~ 944 (1493)
..+||||||++|+.|+++.+....... ..++.+.|+..... . ..|.|+|-..+...-
T Consensus 81 ------------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~--- 137 (442)
T COG1061 81 ------------RSTLVLVPTKELLDQWAEALKKFLLLN-DEIGIYGGGEKELE------P-AKVTVATVQTLARRQ--- 137 (442)
T ss_pred ------------CCEEEEECcHHHHHHHHHHHHHhcCCc-cccceecCceeccC------C-CcEEEEEhHHHhhhh---
Confidence 129999999999999997777654221 23444444322111 1 369999988876531
Q ss_pred cCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCc
Q psy16310 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP 1024 (1493)
Q Consensus 945 ~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~ 1024 (1493)
........+.++||||||||+....+ ..+...+. .....+++|||+++................ ....
T Consensus 138 ~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~~~~~~-----~~~~~LGLTATp~R~D~~~~~~l~~~~g~~---vy~~ 205 (442)
T COG1061 138 LLDEFLGNEFGLIIFDEVHHLPAPSY----RRILELLS-----AAYPRLGLTATPEREDGGRIGDLFDLIGPI---VYEV 205 (442)
T ss_pred hhhhhcccccCEEEEEccccCCcHHH----HHHHHhhh-----cccceeeeccCceeecCCchhHHHHhcCCe---Eeec
Confidence 00111122579999999999876544 34444432 111289999999855422211111000000 0001
Q ss_pred hhHHHHhHhccCCCcEEeccccccccc-----ccee------------------eEEEecccchhhHHHHHHHh--CCCc
Q psy16310 1025 SIKRLQDLLNIKSPKIVDLTEKIGITK-----TLTE------------------SKILCKHDEKDSYLYYFILQ--HPGR 1079 (1493)
Q Consensus 1025 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~------------------~~~~~~~~~k~~~l~~~l~~--~~~~ 1079 (1493)
....+...-.+.+..+..+........ .... .........+...+...+.. ...+
T Consensus 206 ~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (442)
T COG1061 206 SLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDK 285 (442)
T ss_pred CHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCc
Confidence 112222212222222222211100000 0000 00111112222233333333 3579
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChh
Q psy16310 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159 (1493)
Q Consensus 1080 ~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~ 1159 (1493)
++|||.+..++..++..|...+. +..+.|..+..+|..++++|+.|.+++||++.++.+|+|+|+++++|...++.|..
T Consensus 286 ~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~ 364 (442)
T COG1061 286 TLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRR 364 (442)
T ss_pred EEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHH
Confidence 99999999999999999988877 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCC
Q psy16310 1160 IYIHRSGRTARA 1171 (1493)
Q Consensus 1160 ~yiqr~GR~gR~ 1171 (1493)
.|+||+||.-|.
T Consensus 365 ~~~Q~lGR~LR~ 376 (442)
T COG1061 365 LFIQRLGRGLRP 376 (442)
T ss_pred HHHHHhhhhccC
Confidence 999999999994
No 177
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=9.7e-25 Score=270.53 Aligned_cols=404 Identities=18% Similarity=0.200 Sum_probs=247.2
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHH-HHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL-TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
.|. .|+++|.-..- +|..| -|+.++||+|||++|++|++ +.+.
T Consensus 78 lg~-~~~dvQlig~l-~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~-------------------------------- 121 (830)
T PRK12904 78 LGM-RHFDVQLIGGM-VLHEG--KIAEMKTGEGKTLVATLPAYLNALT-------------------------------- 121 (830)
T ss_pred hCC-CCCccHHHhhH-HhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------------------------------
Confidence 355 69999988774 66665 48899999999999999995 4441
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHc
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQL 326 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~ 326 (1493)
+..+-|++||..||.|.++.+..+...+|+++++++|+++...+..... +||+++||++| .++|..
T Consensus 122 -----------G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~--~dI~ygT~~elgfDyLrd 188 (830)
T PRK12904 122 -----------GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA--ADITYGTNNEFGFDYLRD 188 (830)
T ss_pred -----------CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC--CCeEEECCcchhhhhhhc
Confidence 2237799999999999999999999999999999999999887766653 79999999999 888875
Q ss_pred CCcc-c--cccccccEEEEecCchhhhcC-C---------------hhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 327 GHFH-L--TELYKINYLVIDETDRMIESG-H---------------FPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 327 ~~~~-~--~~l~~i~~lViDEAh~ll~~~-~---------------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.... . ..++.+.++||||||.||=.. . +..+..+...+... .+
T Consensus 189 ~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~------------~d------ 250 (830)
T PRK12904 189 NMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKE------------GD------ 250 (830)
T ss_pred ccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCC------------CC------
Confidence 5321 0 124578999999999987321 1 11222222222100 00
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCC-chhhhHHhhh------hccCCcc------cch
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQDLL------NIKSPKI------VDL 454 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~------~~~ 454 (1493)
+.. ....+.+.++..=...+..++.. .. ...... .....+...+ .....++ .-+
T Consensus 251 ----y~v---de~~~~v~lte~G~~~~e~~~~~----~~--ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~iv 317 (830)
T PRK12904 251 ----YTV---DEKSRTVGLTEEGIEKAEKLLGI----EN--LYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIV 317 (830)
T ss_pred ----eEE---EcCCCeeeECHHHHHHHHHHhCC----cc--ccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEE
Confidence 000 01112222222111111111110 00 000000 0000000000 0000000 000
Q ss_pred ---hhhhccccccc----hh------hhhhccC---CcchhhHHH----HhcCCCcchhhHHHhhhhccCCccccccccc
Q psy16310 455 ---TEKIGITKTLT----ES------KILCKHD---EKDSYLYYF----ILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514 (1493)
Q Consensus 455 ---~~~~~~~~~~~----~~------~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1493)
++.......+. +. ....... ..-.+..+| -...-..+.......+...+.-.+.......
T Consensus 318 De~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnk 397 (830)
T PRK12904 318 DEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNR 397 (830)
T ss_pred ECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCC
Confidence 00000000000 00 0000000 000111111 1111122333334445555555444444433
Q ss_pred cccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHh
Q psy16310 515 GITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 591 (1493)
Q Consensus 515 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr 591 (1493)
..........+......|...+...+.. .+.++||||+|...++.|+.+|...+++...+||. +.+|...+..|+
T Consensus 398 p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~A 475 (830)
T PRK12904 398 PMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQA 475 (830)
T ss_pred CeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhc
Confidence 3333333334455566778888777744 35799999999999999999999999999999995 889999999999
Q ss_pred cCCCeEEEEechhhccCCCCCC--------------------------------------cEEEEecCCCChHHHHHHHh
Q psy16310 592 DQNNSILLATDVAARGLDIPGI--------------------------------------EHVIHYHVPRTSEIYIHRSG 633 (1493)
Q Consensus 592 ~g~~~VLVaTdv~~rGlDip~v--------------------------------------~~VI~yd~P~s~~~yiQR~G 633 (1493)
.+...|+||||+|+||+||+== =|||-...|.|..---|-.|
T Consensus 476 g~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrG 555 (830)
T PRK12904 476 GRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRG 555 (830)
T ss_pred CCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhc
Confidence 9999999999999999999632 17888899999999999999
Q ss_pred ccccCCCCCeEEEEecCCcch
Q psy16310 634 RTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 634 RagR~g~~G~~i~l~~~~e~~ 654 (1493)
||||-|.+|.+-.+++-+|--
T Consensus 556 RagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 556 RSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred ccccCCCCCceeEEEEcCcHH
Confidence 999999999999999876643
No 178
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=5e-24 Score=263.18 Aligned_cols=348 Identities=17% Similarity=0.229 Sum_probs=231.3
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..|+++|.-+-- ++..|+ |+.+.||+|||+++.+|++...+.
T Consensus 79 ~~~~dvQlig~l-~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~----------------------------------- 120 (796)
T PRK12906 79 LRPFDVQIIGGI-VLHEGN--IAEMKTGEGKTLTATLPVYLNALT----------------------------------- 120 (796)
T ss_pred CCCchhHHHHHH-HHhcCC--cccccCCCCCcHHHHHHHHHHHHc-----------------------------------
Confidence 478999998874 666665 899999999999999998876643
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHH-HHHHhCcC-
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLGHF- 946 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~-~~l~~~~~- 946 (1493)
|..+-|++||--||.|.++.+..+...+|++++++.|+.+........ .+||+.+|...|- |.|+.+..
T Consensus 121 -------G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~ 191 (796)
T PRK12906 121 -------GKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVV 191 (796)
T ss_pred -------CCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhcccc
Confidence 345999999999999999999999999999999999988776654443 4699999998774 34443211
Q ss_pred --ccccccceeEEEecccchhccC-C---------------ChhHHHHHHHHhcccC-----------------------
Q psy16310 947 --HLTELYKINYLVIDETDRMIES-G---------------HFPELKNILDRVTMTE----------------------- 985 (1493)
Q Consensus 947 --~~~~l~~l~~lVlDEah~ll~~-~---------------~~~~l~~il~~l~~~~----------------------- 985 (1493)
.......+.+.|+||+|.++=+ . .+..+..++..+....
T Consensus 192 ~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~ 271 (796)
T PRK12906 192 YKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTIS 271 (796)
T ss_pred chhhhhccCcceeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCcee
Confidence 0011345789999999986311 1 1111222222111000
Q ss_pred -------------------CC---------------------------CCceEEEEe---------cccccchHhHHhhh
Q psy16310 986 -------------------TS---------------------------QPRQTFVFS---------ATLTHSLKNSLNLK 1010 (1493)
Q Consensus 986 -------------------~~---------------------------~~~q~ll~S---------ATl~~~~~~~~~~~ 1010 (1493)
.. .+-.++++- -+++..+.+.+..+
T Consensus 272 lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaK 351 (796)
T PRK12906 272 LTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAK 351 (796)
T ss_pred ecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHh
Confidence 00 001122221 11223334444333
Q ss_pred ccCcCcccc-cCCCchhHHH------------------HhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHH
Q psy16310 1011 KGQSKSKKV-SKGDPSIKRL------------------QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071 (1493)
Q Consensus 1011 ~~~~~~~~~-~~~~~~~~~l------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 1071 (1493)
.+....... ....-....+ .....+.+-.++.+.........-....+......|...+..
T Consensus 352 e~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~ 431 (796)
T PRK12906 352 EGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVK 431 (796)
T ss_pred cCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHH
Confidence 221111000 0000000000 011112222223322221111111122234445567777777
Q ss_pred HHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccC---CC
Q psy16310 1072 FILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI---PG 1145 (1493)
Q Consensus 1072 ~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDi---p~ 1145 (1493)
.+.. .+.++||||+|+..++.++..|...|++...+||++.+.++..+...++.|. |+|||++++||+|| ++
T Consensus 432 ~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~ 509 (796)
T PRK12906 432 EIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPG 509 (796)
T ss_pred HHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcc
Confidence 6643 4789999999999999999999999999999999999888888888887777 99999999999999 48
Q ss_pred cc-----EEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1146 IE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1146 v~-----~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
|. |||+++.|.+...|.|++|||||.|.+|.+..|++..|
T Consensus 510 V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 510 VKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred hhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 99 99999999999999999999999999999999998765
No 179
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.93 E-value=9.7e-25 Score=279.04 Aligned_cols=121 Identities=20% Similarity=0.370 Sum_probs=110.8
Q ss_pred ccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHH-HhcCCCccccccCCCHHHHHHHHHHHhcC--CCeEEEEech
Q psy16310 528 KHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLL-TMLKCSPLPLHASMNQRQRLKNLDRFRDQ--NNSILLATDV 603 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L-~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g--~~~VLVaTdv 603 (1493)
..+.|...|..++... +.++||||+++.++..+.+.| ...|+.+..+||+|++.+|.++++.|+++ ..+|||||++
T Consensus 476 ~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 476 NFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred ccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 3456888888888765 679999999999999999999 46699999999999999999999999984 5999999999
Q ss_pred hhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEe
Q psy16310 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648 (1493)
Q Consensus 604 ~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~ 648 (1493)
+++|+|++.+++||+||+|.|+..|+||+||+||.|.+|.+.+++
T Consensus 556 gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~ 600 (956)
T PRK04914 556 GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHV 600 (956)
T ss_pred hccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999998776665
No 180
>KOG0947|consensus
Probab=99.93 E-value=4.2e-25 Score=262.92 Aligned_cols=383 Identities=16% Similarity=0.127 Sum_probs=232.4
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
..| .|..+|++||- .+..|..|+|.|+|.+|||+++-..|.-.
T Consensus 294 ~pF-elD~FQk~Ai~-~lerg~SVFVAAHTSAGKTvVAEYAiala----------------------------------- 336 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIY-HLERGDSVFVAAHTSAGKTVVAEYAIALA----------------------------------- 336 (1248)
T ss_pred CCC-CccHHHHHHHH-HHHcCCeEEEEecCCCCcchHHHHHHHHH-----------------------------------
Confidence 455 58899999996 78889999999999999999865544311
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~ 328 (1493)
...+.|+++.+|-++|.+|-++.|+.-... +++++|+...+. .+.++|+|.++|..+|.++.
T Consensus 337 -------q~h~TR~iYTSPIKALSNQKfRDFk~tF~D----vgLlTGDvqinP-------eAsCLIMTTEILRsMLYrga 398 (1248)
T KOG0947|consen 337 -------QKHMTRTIYTSPIKALSNQKFRDFKETFGD----VGLLTGDVQINP-------EASCLIMTTEILRSMLYRGA 398 (1248)
T ss_pred -------HhhccceEecchhhhhccchHHHHHHhccc----cceeecceeeCC-------CcceEeehHHHHHHHHhccc
Confidence 123457999999999999999999887654 338899865443 36899999999999998765
Q ss_pred ccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEee
Q psy16310 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 408 (1493)
Q Consensus 329 ~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SA 408 (1493)
.- ++++++|||||+|.+-+..++-.++.++-.+ |...++|++||
T Consensus 399 dl---iRDvE~VIFDEVHYiND~eRGvVWEEViIMl---------------------------------P~HV~~IlLSA 442 (1248)
T KOG0947|consen 399 DL---IRDVEFVIFDEVHYINDVERGVVWEEVIIML---------------------------------PRHVNFILLSA 442 (1248)
T ss_pred ch---hhccceEEEeeeeecccccccccceeeeeec---------------------------------cccceEEEEec
Confidence 43 4579999999999998888887777777655 56689999999
Q ss_pred ccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCC
Q psy16310 409 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 488 (1493)
Q Consensus 409 Tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (1493)
|+|+.....-++.....+...+........ |.-..+.....+.+.+.+..+++.......+... ..+
T Consensus 443 TVPN~~EFA~WIGRtK~K~IyViST~kRPV----------PLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~---~~~ 509 (1248)
T KOG0947|consen 443 TVPNTLEFADWIGRTKQKTIYVISTSKRPV----------PLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSL---KKE 509 (1248)
T ss_pred cCCChHHHHHHhhhccCceEEEEecCCCcc----------ceEEEEEeccceehhhcccchhhhhcchhhhhhh---ccc
Confidence 999876433322222222111111100000 0000000000000001111111111111110000 000
Q ss_pred CcchhhH-HHhhhhccCCccccccccccccccccccccccccC---chhhHHHHHHhhC-CCcEEEEecchhhHHHHHHH
Q psy16310 489 GRTLCEE-IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD---EKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQL 563 (1493)
Q Consensus 489 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~ 563 (1493)
....... ..........+ ...............-..... .-...+...|... --++||||-|+..|+..+.+
T Consensus 510 ak~~~~~~~~~~~~rgs~~---~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 510 AKFVDVEKSDARGGRGSQK---RGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred ccccccccccccccccccc---cCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHH
Confidence 0000000 00000000000 000000000000000000001 1123344444433 46999999999999999988
Q ss_pred HHhc---------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechh
Q psy16310 564 LTML---------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604 (1493)
Q Consensus 564 L~~~---------------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~ 604 (1493)
|... .-++++||||+-+--+.-+.-.|..|-++||+||.++
T Consensus 587 L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETF 666 (1248)
T KOG0947|consen 587 LTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETF 666 (1248)
T ss_pred HhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhh
Confidence 8332 2456789999999999999999999999999999999
Q ss_pred hccCCCCCCcEEEEe----c----CCCChHHHHHHHhccccCCCC--CeEEEEecCCcchhhhhh
Q psy16310 605 ARGLDIPGIEHVIHY----H----VPRTSEIYIHRSGRTARANNE--GLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 605 ~rGlDip~v~~VI~y----d----~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~e~~~~~~l 659 (1493)
+.|+|+|.-.+|+.- | --.++-+|.|++|||||.|-. |.++++.... ++....+
T Consensus 667 AMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l 730 (1248)
T KOG0947|consen 667 AMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATL 730 (1248)
T ss_pred hhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHH
Confidence 999999987777631 1 124688999999999998875 8877766443 4544444
No 181
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.93 E-value=1.3e-24 Score=239.12 Aligned_cols=192 Identities=42% Similarity=0.711 Sum_probs=167.6
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchh
Q psy16310 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 849 (1493)
Q Consensus 770 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 849 (1493)
|+++++++.+.+.|.+.||+.|+++|.++++.++ .|+|+++++|||+|||++|++|+++.+....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLL-SGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--------------
Confidence 7889999999999999999999999999998655 5899999999999999999999998875421
Q ss_pred HHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcE
Q psy16310 850 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929 (1493)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~I 929 (1493)
...+++++|++||++|+.|+.+.++.+....++.+..++|+.........+..+++|
T Consensus 66 -----------------------~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 122 (203)
T cd00268 66 -----------------------KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHI 122 (203)
T ss_pred -----------------------ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCE
Confidence 134578999999999999999999999888889999999999887776667668899
Q ss_pred EEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 930 lV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|+||++|.+++..+. ..+.+++++|+||||++.+.++...+..++..+. ...|++++|||+++.....+
T Consensus 123 iv~T~~~l~~~l~~~~---~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~-----~~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 123 VVATPGRLLDLLERGK---LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP-----KDRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred EEEChHHHHHHHHcCC---CChhhCCEEEEeChHHhhccChHHHHHHHHHhCC-----cccEEEEEeccCCHHHHHHH
Confidence 9999999999988665 3466889999999999998889888988888773 57999999999997766554
No 182
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.93 E-value=2.1e-24 Score=237.52 Aligned_cols=192 Identities=42% Similarity=0.726 Sum_probs=165.8
Q ss_pred ccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccch
Q psy16310 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 232 (1493)
Q Consensus 153 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 232 (1493)
|+++++++.+.+.+.+.|++.|+++|.++++. +..++|+++++|||+|||++|++|+++++....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPP-LLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--------------
Confidence 67899999999999999999999999999985 556899999999999999999999998885421
Q ss_pred HHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCE
Q psy16310 233 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312 (1493)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~I 312 (1493)
...+++++|++||++|+.|+...+..+....++.+..++|+.........+..+++|
T Consensus 66 -----------------------~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 122 (203)
T cd00268 66 -----------------------KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHI 122 (203)
T ss_pred -----------------------ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCE
Confidence 124578999999999999999999999888889999999999887777777678899
Q ss_pred EEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhc
Q psy16310 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392 (1493)
Q Consensus 313 iV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (1493)
+|+||+.|.+++.+... .+.+++++|+||||++.+.++...+..++..+.
T Consensus 123 iv~T~~~l~~~l~~~~~---~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~--------------------------- 172 (203)
T cd00268 123 VVATPGRLLDLLERGKL---DLSKVKYLVLDEADRMLDMGFEDQIREILKLLP--------------------------- 172 (203)
T ss_pred EEEChHHHHHHHHcCCC---ChhhCCEEEEeChHHhhccChHHHHHHHHHhCC---------------------------
Confidence 99999999999887653 355889999999999988888888888887652
Q ss_pred cccCCCCCceEEEEeeccchhhhhhh
Q psy16310 393 TMTETSQPRQTFVFSATLTHSLKNSL 418 (1493)
Q Consensus 393 ~~~~~~~~~q~il~SATl~~~~~~~~ 418 (1493)
..+|++++|||+++.+..++
T Consensus 173 ------~~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 173 ------KDRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred ------cccEEEEEeccCCHHHHHHH
Confidence 35799999999998776554
No 183
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=4.6e-24 Score=261.33 Aligned_cols=102 Identities=18% Similarity=0.280 Sum_probs=83.1
Q ss_pred HHHHHHHHHhc--CCCccccccCCCHHHH--HHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE--EecCCC-------
Q psy16310 557 VKRLTQLLTML--KCSPLPLHASMNQRQR--LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI--HYHVPR------- 623 (1493)
Q Consensus 557 a~~L~~~L~~~--~~~~~~lhg~~~~~~R--~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI--~yd~P~------- 623 (1493)
++++.+.|... +.++..+|+++++.++ ..+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|...
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 57777778766 6788899999987766 8999999999999999999999999999999985 555432
Q ss_pred ---ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhh
Q psy16310 624 ---TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK 658 (1493)
Q Consensus 624 ---s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~ 658 (1493)
....|+|++||+||++..|.+++.....+.+....
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~~~ 388 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQA 388 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHHHH
Confidence 24678999999999999999987665555444433
No 184
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.1e-24 Score=266.41 Aligned_cols=414 Identities=15% Similarity=0.202 Sum_probs=239.2
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|.-..- +|..|+ |+.+.||+|||+++.+|++-..+
T Consensus 78 g~-~~~dvQlig~l-~l~~G~--iaEm~TGEGKTLvA~l~a~l~al---------------------------------- 119 (796)
T PRK12906 78 GL-RPFDVQIIGGI-VLHEGN--IAEMKTGEGKTLTATLPVYLNAL---------------------------------- 119 (796)
T ss_pred CC-CCchhHHHHHH-HHhcCC--cccccCCCCCcHHHHHHHHHHHH----------------------------------
Confidence 55 69999988774 666664 88999999999999999875553
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHH-HHHHcCC
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLGH 328 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~-~~l~~~~ 328 (1493)
.|..|-|++||--||.|-+..+..+...+|+++++++|+++........ .+||+.+|..-|- +.|....
T Consensus 120 --------~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m 189 (796)
T PRK12906 120 --------TGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNM 189 (796)
T ss_pred --------cCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhcc
Confidence 3456999999999999999999999999999999999998777665544 4699999998763 3333221
Q ss_pred c---cccccccccEEEEecCchhhhc-CC---------------hhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 329 F---HLTELYKINYLVIDETDRMIES-GH---------------FPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 329 ~---~~~~l~~i~~lViDEAh~ll~~-~~---------------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
. .-.....+.+.||||+|.+|=. .. +..+..+...+...... .....-..+++
T Consensus 190 ~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~-~~~~~~~~~dy------- 261 (796)
T PRK12906 190 VVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAE-DGDDDEDTGDY------- 261 (796)
T ss_pred ccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhc-cccccCCCCce-------
Confidence 0 0111345789999999997622 11 11222222222111000 00000000000
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCC-chhhhHHhh------hhccCCc------ccch--
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQDL------LNIKSPK------IVDL-- 454 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~------~~~~-- 454 (1493)
... ... +.+.++..=-..+..++.+. . ...... .....+... +...... +.-+
T Consensus 262 ---~id--~~~-k~v~lte~G~~~~e~~~~i~----~--l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~ 329 (796)
T PRK12906 262 ---KID--EKT-KTISLTEQGIRKAEKLFGLD----N--LYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDE 329 (796)
T ss_pred ---EEE--ccc-CceeecHHHHHHHHHHcCCc----c--ccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeC
Confidence 000 011 11111110000111111000 0 000000 000000000 0000000 0000
Q ss_pred -hhhhccccccc----hh------hhhhccCC---cchhhHHH----HhcCCCcchhhHHHhhhhccCCccccccccccc
Q psy16310 455 -TEKIGITKTLT----ES------KILCKHDE---KDSYLYYF----ILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516 (1493)
Q Consensus 455 -~~~~~~~~~~~----~~------~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1493)
++.......+. +. ....+... .-.+..+| -...-..+.......+...+.-.+.........
T Consensus 330 ~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~ 409 (796)
T PRK12906 330 FTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPV 409 (796)
T ss_pred CCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCe
Confidence 00000000000 00 00000000 00111111 011111222233333444444444333333322
Q ss_pred cccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC
Q psy16310 517 TKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 593 (1493)
Q Consensus 517 ~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g 593 (1493)
........++.....|...+...+.. .+.++||||+|...++.|+..|...+++...+||.+.+.++..+..+++.|
T Consensus 410 ~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g 489 (796)
T PRK12906 410 IRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG 489 (796)
T ss_pred eeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc
Confidence 22222333444556677777777743 467999999999999999999999999999999999988888888877777
Q ss_pred CCeEEEEechhhccCCCC---CCc-----EEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 594 NNSILLATDVAARGLDIP---GIE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 594 ~~~VLVaTdv~~rGlDip---~v~-----~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
. |+|||++|+||+||+ +|. +||+++.|.|...|.|++|||||.|.+|.+..|++.+|-
T Consensus 490 ~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 490 A--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred e--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 6 999999999999994 899 999999999999999999999999999999999988763
No 185
>KOG2340|consensus
Probab=99.92 E-value=8.9e-25 Score=245.46 Aligned_cols=394 Identities=19% Similarity=0.217 Sum_probs=277.1
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCC---ch--hHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHH
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGS---GK--TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 244 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGS---GK--Tl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1493)
.-..+|+.|.+.+. ++.+++|++. ||+| |+ +-+|||++++|+++.+. .+..+..++..
T Consensus 213 ~s~pltalQ~~L~~-~m~~YrDl~y--~~~s~kn~~e~R~lYclH~lNHi~K~r~--------------~IL~Nn~r~~S 275 (698)
T KOG2340|consen 213 KSEPLTALQKELFK-IMFNYRDLLY--PTRSQKNGEEYRSLYCLHALNHILKTRD--------------LILGNNRRLAS 275 (698)
T ss_pred ccCcchHHHHHHHH-HHHhhhhhcc--ccccccccchhhhhHHHHHHHHHHHHHH--------------HHhcchHhhhh
Confidence 33568999999996 7889999985 4444 44 56899999999998542 33333333322
Q ss_pred h---hhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCe-E--E------EEEEcC-C-------CHHHHHH
Q psy16310 245 E---SANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV-K--V------ACVVGG-M-------STEKQLR 304 (1493)
Q Consensus 245 ~---~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i-~--v------~~~~G~-~-------~~~~~~~ 304 (1493)
+ -.+..++++++.++|+||||||+|+-|..+.+.+..+..+..- + | ..-++| + .......
T Consensus 276 qk~g~~~~~~frDQG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~ 355 (698)
T KOG2340|consen 276 QKEGENPDESFRDQGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFE 355 (698)
T ss_pred hhcCCCCchhhhhcCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHH
Confidence 2 2556789999999999999999999999999999887433221 0 0 011111 0 0111111
Q ss_pred Hh-------------------------cCCCCEEEeCcHHHHHHHH---cCCccccccccccEEEEecCchhhhcCChhh
Q psy16310 305 IL-------------------------NKCPHILVATPGRLWEFIQ---LGHFHLTELYKINYLVIDETDRMIESGHFPE 356 (1493)
Q Consensus 305 ~l-------------------------~~~~~IiV~TP~~L~~~l~---~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~ 356 (1493)
.+ ....|||||+|-.|..++. ....+.++|++|.++|||-||.|+ ++.|++
T Consensus 356 ~lf~GNtDD~FriGl~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEh 434 (698)
T KOG2340|consen 356 ELFSGNTDDAFRIGLAFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEH 434 (698)
T ss_pred HHhcCCCcchhhhhHHHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHH
Confidence 11 1225899999999998887 345567789999999999999776 789999
Q ss_pred HHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCch
Q psy16310 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436 (1493)
Q Consensus 357 l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (1493)
+..|++.++..|. ..|..++.++++|+...++...+|+++||+...+....++...-
T Consensus 435 l~~ifdHLn~~P~---------k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c-------------- 491 (698)
T KOG2340|consen 435 LLHIFDHLNLQPS---------KQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYC-------------- 491 (698)
T ss_pred HHHHHHHhhcCcc---------cccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhh--------------
Confidence 9999999988765 34788999999999999999999999999988766554442111
Q ss_pred hhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccc
Q psy16310 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516 (1493)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1493)
.+..+.+......... .+..... .++..
T Consensus 492 ---------------~N~~Gkv~~~~~~~~g-si~~v~~---------------~l~Qv--------------------- 519 (698)
T KOG2340|consen 492 ---------------QNMAGKVKARNLQSGG-SISNVGI---------------PLCQV--------------------- 519 (698)
T ss_pred ---------------hhhcceeeeccccCCC-chhhccc---------------hhhhh---------------------
Confidence 1111111110000000 0000000 00000
Q ss_pred cccccccccccccCchhhHHHHHHhhC-----CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHh
Q psy16310 517 TKTLTESKILCKHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 591 (1493)
Q Consensus 517 ~~~~~~~~~~~~~~~k~~~l~~~l~~~-----~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr 591 (1493)
...+....+....+.++.++...+... ...+|||++++.+..++..+++...+.+..+|...+..+-.++.+.|-
T Consensus 520 f~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~ 599 (698)
T KOG2340|consen 520 FQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFF 599 (698)
T ss_pred hhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHH
Confidence 011122233344556666665554332 357899999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEechhh--ccCCCCCCcEEEEecCCCChHHH---HHHHhccccCCC----CCeEEEEecCCcchhh
Q psy16310 592 DQNNSILLATDVAA--RGLDIPGIEHVIHYHVPRTSEIY---IHRSGRTARANN----EGLTVVLIESDEIPLK 656 (1493)
Q Consensus 592 ~g~~~VLVaTdv~~--rGlDip~v~~VI~yd~P~s~~~y---iQR~GRagR~g~----~G~~i~l~~~~e~~~~ 656 (1493)
.|..+||+.|..++ |..+|.+|..||+|.+|.++..| +.+.||+.--|+ .-.|.++|+.-|....
T Consensus 600 qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~L 673 (698)
T KOG2340|consen 600 QGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRL 673 (698)
T ss_pred hcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHH
Confidence 99999999999998 99999999999999999999887 567777764442 3578888887665443
No 186
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=6.6e-24 Score=269.93 Aligned_cols=335 Identities=20% Similarity=0.229 Sum_probs=198.3
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
...|+|+|..+.. ...++..+|+.||||+|||.++++.+.. +...
T Consensus 284 ~~~p~p~Q~~~~~-~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~--------------------------------- 328 (878)
T PRK09694 284 GYQPRQLQTLVDA-LPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQ--------------------------------- 328 (878)
T ss_pred CCCChHHHHHHHh-hccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHh---------------------------------
Confidence 3479999998864 3334568999999999999998776553 3211
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCC--CCeEEEEEEcCCCHHHHH---------------------HHhc
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY--TPVKVACVVGGMSTEKQL---------------------RILN 307 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~--~~i~v~~~~G~~~~~~~~---------------------~~l~ 307 (1493)
....+++|.+||+++++|++..+..+... ...++.+++|.......+ ..+.
T Consensus 329 ------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 402 (878)
T PRK09694 329 ------GLADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLS 402 (878)
T ss_pred ------CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHh
Confidence 12246999999999999999988753321 134677777764322111 1111
Q ss_pred ---C---CCCEEEeCcHHHHHHHHcC-Ccccc--ccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccc
Q psy16310 308 ---K---CPHILVATPGRLWEFIQLG-HFHLT--ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378 (1493)
Q Consensus 308 ---~---~~~IiV~TP~~L~~~l~~~-~~~~~--~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~ 378 (1493)
+ -.+|+|||...++..+... +..+. .| .-++|||||+|.+ +......+..+++.+..
T Consensus 403 ~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L-a~svvIiDEVHAy-D~ym~~lL~~~L~~l~~------------ 468 (878)
T PRK09694 403 QSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL-GRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ------------ 468 (878)
T ss_pred hhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh-ccCeEEEechhhC-CHHHHHHHHHHHHHHHh------------
Confidence 1 1589999998776544322 11111 11 1258999999966 43333445555544321
Q ss_pred cCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhh
Q psy16310 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458 (1493)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1493)
....+|+||||+|..+...+.-..+...........|
T Consensus 469 --------------------~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YP----------------------- 505 (878)
T PRK09694 469 --------------------AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYP----------------------- 505 (878)
T ss_pred --------------------cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccc-----------------------
Confidence 2346999999999876543311000000000000000
Q ss_pred ccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccc-ccccCchhhHHH
Q psy16310 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI-LCKHDEKDSYLY 537 (1493)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~ 537 (1493)
.+....... . .. ......+. .......+.-... ..........+.
T Consensus 506 ----------lvt~~~~~~-~----------~~-------~~~~~~~~------~~~~~~~v~v~~~~~~~~~~~~~~l~ 551 (878)
T PRK09694 506 ----------LITWRGVNG-A----------QR-------FDLSAHPE------QLPARFTIQLEPICLADMLPDLTLLQ 551 (878)
T ss_pred ----------ccccccccc-c----------ee-------eecccccc------ccCcceEEEEEeeccccccCHHHHHH
Confidence 000000000 0 00 00000000 0000000000000 000011112222
Q ss_pred HHHh--hCCCcEEEEecchhhHHHHHHHHHhcC---CCccccccCCCHHHH----HHHHHHH-hcCC---CeEEEEechh
Q psy16310 538 YFIL--QHPGRTLVFCNSISSVKRLTQLLTMLK---CSPLPLHASMNQRQR----LKNLDRF-RDQN---NSILLATDVA 604 (1493)
Q Consensus 538 ~~l~--~~~~~~IIF~~s~~~a~~L~~~L~~~~---~~~~~lhg~~~~~~R----~~vl~~F-r~g~---~~VLVaTdv~ 604 (1493)
.++. ..++++||||||+..|..+++.|+..+ ..+..+||.++..+| .++++.| ++|+ ..|||||+|+
T Consensus 552 ~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQVi 631 (878)
T PRK09694 552 RMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVV 631 (878)
T ss_pred HHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcch
Confidence 2222 346789999999999999999998764 578999999999999 4678888 6676 4799999999
Q ss_pred hccCCCCCCcEEEEecCCCChHHHHHHHhccccCCC
Q psy16310 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 640 (1493)
Q Consensus 605 ~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~ 640 (1493)
++|||| +++++|....| +..|+||+||++|.++
T Consensus 632 E~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 632 EQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred hheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999 68999999888 6799999999999886
No 187
>KOG0948|consensus
Probab=99.92 E-value=2.6e-25 Score=258.30 Aligned_cols=359 Identities=16% Similarity=0.151 Sum_probs=224.9
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+.|+|..+|. .+.++..|+|+|.|.+|||.++-..|...+-
T Consensus 129 ~LDpFQ~~aI~-Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr------------------------------------- 170 (1041)
T KOG0948|consen 129 TLDPFQSTAIK-CIDRGESVLVSAHTSAGKTVVAEYAIAMSLR------------------------------------- 170 (1041)
T ss_pred ccCchHhhhhh-hhcCCceEEEEeecCCCcchHHHHHHHHHHH-------------------------------------
Confidence 57899999996 7888999999999999999998777765552
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
.+-|+++..|-++|.+|-++.+..-.+ .|++.+|+.+.+. .+..+|+|.++|..+|.++.--+
T Consensus 171 -----~kQRVIYTSPIKALSNQKYREl~~EF~----DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvm- 233 (1041)
T KOG0948|consen 171 -----EKQRVIYTSPIKALSNQKYRELLEEFK----DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVM- 233 (1041)
T ss_pred -----hcCeEEeeChhhhhcchhHHHHHHHhc----ccceeecceeeCC-------CCceeeeHHHHHHHHHhccchHh-
Confidence 234799999999999999999876543 3677888865443 35799999999999998876543
Q ss_pred ccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccch
Q psy16310 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~ 412 (1493)
.-+.|+||||.|.|-+..++-.++.-+-. .+...+.+++|||+|+
T Consensus 234 --rEVaWVIFDEIHYMRDkERGVVWEETIIl---------------------------------lP~~vr~VFLSATiPN 278 (1041)
T KOG0948|consen 234 --REVAWVIFDEIHYMRDKERGVVWEETIIL---------------------------------LPDNVRFVFLSATIPN 278 (1041)
T ss_pred --heeeeEEeeeehhccccccceeeeeeEEe---------------------------------ccccceEEEEeccCCC
Confidence 37899999999999776655433332222 2667899999999998
Q ss_pred hhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcch
Q psy16310 413 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492 (1493)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1493)
.....-++........-+...+-....++- +-++..-...+.++... ..+ ....+
T Consensus 279 A~qFAeWI~~ihkQPcHVVYTdyRPTPLQH---------------yifP~ggdGlylvVDek--~~F--------rednF 333 (1041)
T KOG0948|consen 279 ARQFAEWICHIHKQPCHVVYTDYRPTPLQH---------------YIFPAGGDGLYLVVDEK--GKF--------REDNF 333 (1041)
T ss_pred HHHHHHHHHHHhcCCceEEeecCCCCccee---------------eeecCCCCeeEEEEecc--ccc--------chHHH
Confidence 654322222211111111111110000000 00000000001110000 000 00001
Q ss_pred hhHHHhhhhccCCccccccccccccccccccc---cccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhc--
Q psy16310 493 CEEIQDLLNIKSPKIVDLTEKIGITKTLTESK---ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML-- 567 (1493)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~-- 567 (1493)
...+..+....... ..... ........ --...+.-...+-..+.....++|||+-|+++|+.++-.+..+
T Consensus 334 ~~am~~l~~~~~~~----~~~~~-~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldf 408 (1041)
T KOG0948|consen 334 QKAMSVLRKAGESD----GKKKA-NKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDF 408 (1041)
T ss_pred HHHHHHhhccCCCc----ccccc-ccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcC
Confidence 11111111100000 00000 00000000 0001112233333444555679999999999999988777332
Q ss_pred -------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCC
Q psy16310 568 -------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610 (1493)
Q Consensus 568 -------------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDi 610 (1493)
.-+++.||||+-+--..-+.=.|.+|-++||+||.+++.|||+
T Consensus 409 N~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNM 488 (1041)
T KOG0948|consen 409 NTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNM 488 (1041)
T ss_pred CChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCC
Confidence 2456789999999999999999999999999999999999999
Q ss_pred CCCcEEEE----ecCC----CChHHHHHHHhccccCCCC--CeEEEEecCC
Q psy16310 611 PGIEHVIH----YHVP----RTSEIYIHRSGRTARANNE--GLTVVLIESD 651 (1493)
Q Consensus 611 p~v~~VI~----yd~P----~s~~~yiQR~GRagR~g~~--G~~i~l~~~~ 651 (1493)
|.-++|+- ||-- .+.-.|||+.|||||.|.. |.||++++..
T Consensus 489 PAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 489 PAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 98777762 3322 3456899999999998875 8888888664
No 188
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.6e-24 Score=271.02 Aligned_cols=372 Identities=17% Similarity=0.151 Sum_probs=233.8
Q ss_pred HHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 167 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 167 ~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
...+| .|.++|++++- +|..+..|++|||||||||.++-..+...+
T Consensus 114 ~~~~F-~LD~fQ~~a~~-~Ler~esVlV~ApTssGKTvVaeyAi~~al-------------------------------- 159 (1041)
T COG4581 114 REYPF-ELDPFQQEAIA-ILERGESVLVCAPTSSGKTVVAEYAIALAL-------------------------------- 159 (1041)
T ss_pred HhCCC-CcCHHHHHHHH-HHhCCCcEEEEccCCCCcchHHHHHHHHHH--------------------------------
Confidence 45678 59999999995 888999999999999999999766655433
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHc
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~ 326 (1493)
.++.++++.+|.++|..|.++.|........-.+++++|+.+.+ .++.|+|+|.+.|.+++..
T Consensus 160 ----------~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyr 222 (1041)
T COG4581 160 ----------RDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYR 222 (1041)
T ss_pred ----------HcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhcc
Confidence 23456999999999999999998765432223457788886543 3468999999999999987
Q ss_pred CCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEE
Q psy16310 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406 (1493)
Q Consensus 327 ~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~ 406 (1493)
+.. .+..+.+|||||+|.|-+...+..++.++-.+ +...++++|
T Consensus 223 g~~---~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l---------------------------------P~~v~~v~L 266 (1041)
T COG4581 223 GSE---SLRDIEWVVFDEVHYIGDRERGVVWEEVIILL---------------------------------PDHVRFVFL 266 (1041)
T ss_pred Ccc---cccccceEEEEeeeeccccccchhHHHHHHhc---------------------------------CCCCcEEEE
Confidence 743 35589999999999999988888888888766 455799999
Q ss_pred eeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhc
Q psy16310 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 486 (1493)
Q Consensus 407 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1493)
|||+|+......++...+.....+...+.-. .|....+....++...+.+.. . + ..
T Consensus 267 SATv~N~~EF~~Wi~~~~~~~~~vv~t~~Rp----------vPL~~~~~~~~~l~~lvde~~-------~--~----~~- 322 (1041)
T COG4581 267 SATVPNAEEFAEWIQRVHSQPIHVVSTEHRP----------VPLEHFVYVGKGLFDLVDEKK-------K--F----NA- 322 (1041)
T ss_pred eCCCCCHHHHHHHHHhccCCCeEEEeecCCC----------CCeEEEEecCCceeeeecccc-------c--c----hh-
Confidence 9999986544333222221111111110000 000000000000000000000 0 0 00
Q ss_pred CCCcchhhHHHhhhhccCCccccccc--cccccccccccccccccCch-hhHHHHHHhhCCCcEEEEecchhhHHHHHHH
Q psy16310 487 HPGRTLCEEIQDLLNIKSPKIVDLTE--KIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563 (1493)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k-~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~ 563 (1493)
.........+.... ........ .......-......+....+ ...+..+......++|+|+-|+..|+..+..
T Consensus 323 ---~~~~~a~~~l~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~ 398 (1041)
T COG4581 323 ---ENFPSANRSLSCFS-EKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQI 398 (1041)
T ss_pred ---hcchhhhhhhhccc-hhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHH
Confidence 00000000000000 00000000 00000000000001111222 3333333344457999999999999987766
Q ss_pred HHhc-----------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEec
Q psy16310 564 LTML-----------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 602 (1493)
Q Consensus 564 L~~~-----------------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTd 602 (1493)
+..+ .-++++||++|-+..+..+...|..|-++|++||.
T Consensus 399 ~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTe 478 (1041)
T COG4581 399 LSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATE 478 (1041)
T ss_pred hcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehh
Confidence 6311 12346799999999999999999999999999999
Q ss_pred hhhccCCCCCCcEEE----Eec----CCCChHHHHHHHhccccCCCC--CeEEEEecCCcc
Q psy16310 603 VAARGLDIPGIEHVI----HYH----VPRTSEIYIHRSGRTARANNE--GLTVVLIESDEI 653 (1493)
Q Consensus 603 v~~rGlDip~v~~VI----~yd----~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~e~ 653 (1493)
+++.|+|+|.=++|+ .+| .+.++..|+|+.|||||.|-. |.++++..+...
T Consensus 479 T~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~ 539 (1041)
T COG4581 479 TFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFES 539 (1041)
T ss_pred hhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCC
Confidence 999999999776665 222 346789999999999998875 888887555443
No 189
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=6.4e-24 Score=257.44 Aligned_cols=111 Identities=23% Similarity=0.378 Sum_probs=97.3
Q ss_pred hhhHHHHHHhhC--CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCC
Q psy16310 532 KDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 609 (1493)
Q Consensus 532 k~~~l~~~l~~~--~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlD 609 (1493)
+...+...+..+ ..+++|||.+...+..++..|...++ +..+.|..+..+|..+++.|+.|.+++||++.++.+|+|
T Consensus 269 ~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvD 347 (442)
T COG1061 269 KIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVD 347 (442)
T ss_pred HHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceec
Confidence 333444444433 57999999999999999999988877 888999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCChHHHHHHHhcccc-CCCCCe
Q psy16310 610 IPGIEHVIHYHVPRTSEIYIHRSGRTAR-ANNEGL 643 (1493)
Q Consensus 610 ip~v~~VI~yd~P~s~~~yiQR~GRagR-~g~~G~ 643 (1493)
+|+++++|...+..|...|+||+||.-| ...++.
T Consensus 348 iP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 348 IPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred CCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 9999999999999999999999999999 433444
No 190
>KOG0947|consensus
Probab=99.92 E-value=8.8e-24 Score=251.74 Aligned_cols=340 Identities=16% Similarity=0.141 Sum_probs=229.3
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
+|-++|++||- .+..|.+++|.|+|.+|||+++..+|.-.
T Consensus 297 elD~FQk~Ai~-~lerg~SVFVAAHTSAGKTvVAEYAiala--------------------------------------- 336 (1248)
T KOG0947|consen 297 ELDTFQKEAIY-HLERGDSVFVAAHTSAGKTVVAEYAIALA--------------------------------------- 336 (1248)
T ss_pred CccHHHHHHHH-HHHcCCeEEEEecCCCCcchHHHHHHHHH---------------------------------------
Confidence 67889999996 67788999999999999999977665421
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~ 949 (1493)
...+.+++|-+|-++|-+|-++.|+..+.. +++++|+.... ..+.++|+|.+.|-.+|.++..
T Consensus 337 ---q~h~TR~iYTSPIKALSNQKfRDFk~tF~D----vgLlTGDvqin-------PeAsCLIMTTEILRsMLYrgad--- 399 (1248)
T KOG0947|consen 337 ---QKHMTRTIYTSPIKALSNQKFRDFKETFGD----VGLLTGDVQIN-------PEASCLIMTTEILRSMLYRGAD--- 399 (1248)
T ss_pred ---HhhccceEecchhhhhccchHHHHHHhccc----cceeecceeeC-------CCcceEeehHHHHHHHHhcccc---
Confidence 234568999999999999999999986533 33788876433 3457999999999999988763
Q ss_pred cccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCC---Cch-
Q psy16310 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG---DPS- 1025 (1493)
Q Consensus 950 ~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~---~~~- 1025 (1493)
.++++.+|||||+|-+.+...+-.++.++-.+ |...+++++|||+|+..+-.-+......+...+... .-.
T Consensus 400 liRDvE~VIFDEVHYiND~eRGvVWEEViIMl-----P~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPL 474 (1248)
T KOG0947|consen 400 LIRDVEFVIFDEVHYINDVERGVVWEEVIIML-----PRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPL 474 (1248)
T ss_pred hhhccceEEEeeeeecccccccccceeeeeec-----cccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccce
Confidence 35679999999999998888877888887766 578999999999998765433222111111111110 000
Q ss_pred ---------hHH--------H-------HhHhccCCCcEEecccccccc------ccceeeEEE------ecccch----
Q psy16310 1026 ---------IKR--------L-------QDLLNIKSPKIVDLTEKIGIT------KTLTESKIL------CKHDEK---- 1065 (1493)
Q Consensus 1026 ---------~~~--------l-------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~------~~~~~k---- 1065 (1493)
+.. + ..... ............... ..-...+.. ....++
T Consensus 475 Eh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~-~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~ 553 (1248)
T KOG0947|consen 475 EHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK-KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQP 553 (1248)
T ss_pred EEEEEeccceehhhcccchhhhhcchhhhhhhc-ccccccccccccccccccccccCCcCCCCCCCcccccccccccccc
Confidence 000 0 00010 001111100000000 000000000 001111
Q ss_pred -hhHHHHHHHh-CCCcEEEEecchhhHHHHHHHHHhc---------------------------------------CCCc
Q psy16310 1066 -DSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTML---------------------------------------KCSP 1104 (1493)
Q Consensus 1066 -~~~l~~~l~~-~~~~~IVF~~s~~~~~~l~~~L~~~---------------------------------------~~~~ 1104 (1493)
...++..+.. .--|+||||-+++.|+..+..|... .-++
T Consensus 554 ~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGi 633 (1248)
T KOG0947|consen 554 TWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGI 633 (1248)
T ss_pred hHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcc
Confidence 1222222322 2458999999999999999998543 1357
Q ss_pred cccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEe----cC----CCChhHHHHHHhccCCCCC--C
Q psy16310 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY----HV----PRTSEIYIHRSGRTARANN--E 1174 (1493)
Q Consensus 1105 ~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~----d~----p~s~~~yiqr~GR~gR~g~--~ 1174 (1493)
++|||++-+--++-+...|..|-++||+||.++|+|+|.|.-.+|+.- |- --.+-.|.|++|||||.|- .
T Consensus 634 aVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~t 713 (1248)
T KOG0947|consen 634 AVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDET 713 (1248)
T ss_pred hhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcC
Confidence 789999999999999999999999999999999999999998877741 11 1246789999999999974 6
Q ss_pred CeEEEEecCC--CHHHHHHH
Q psy16310 1175 GLTLVLIESD--EIPLYIKM 1192 (1493)
Q Consensus 1175 G~~i~l~~~~--e~~~~~~~ 1192 (1493)
|.+++++... +...++++
T Consensus 714 GTVii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 714 GTVIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred ceEEEEecCCCCCHHHHhhH
Confidence 8888887554 44455544
No 191
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=7.8e-24 Score=264.91 Aligned_cols=342 Identities=17% Similarity=0.172 Sum_probs=230.9
Q ss_pred HHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHh
Q psy16310 783 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEE 862 (1493)
Q Consensus 783 l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1493)
....|| .|-++|++++- +|..|.++++|||||||||+++..++...+.
T Consensus 113 ~~~~~F-~LD~fQ~~a~~-~Ler~esVlV~ApTssGKTvVaeyAi~~al~------------------------------ 160 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIA-ILERGESVLVCAPTSSGKTVVAEYAIALALR------------------------------ 160 (1041)
T ss_pred HHhCCC-CcCHHHHHHHH-HHhCCCcEEEEccCCCCcchHHHHHHHHHHH------------------------------
Confidence 345576 57899999995 8889999999999999999998877765552
Q ss_pred hhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHH
Q psy16310 863 SANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942 (1493)
Q Consensus 863 ~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~ 942 (1493)
.+.+++|.+|.++|.+|.++.+........-.+++++|+.+.. ..+.++|+|-+.|-+++.
T Consensus 161 ------------~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMly 221 (1041)
T COG4581 161 ------------DGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLY 221 (1041)
T ss_pred ------------cCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhc
Confidence 2335999999999999999999875432223457777765443 346899999999999998
Q ss_pred hCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCC
Q psy16310 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 1022 (1493)
Q Consensus 943 ~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1493)
++. ..+..+..|||||+|.|.+...+...+.++-.+ |...++++||||+|+..+-..+..........+...
T Consensus 222 rg~---~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l-----P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t 293 (1041)
T COG4581 222 RGS---ESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL-----PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVST 293 (1041)
T ss_pred cCc---ccccccceEEEEeeeeccccccchhHHHHHHhc-----CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEee
Confidence 774 346789999999999999998888888888777 477899999999997654433322111111111111
Q ss_pred CchhHHHHhHhccCCCcEEecccccc---------ccccceee-------------EE---------Eecccch-hhHHH
Q psy16310 1023 DPSIKRLQDLLNIKSPKIVDLTEKIG---------ITKTLTES-------------KI---------LCKHDEK-DSYLY 1070 (1493)
Q Consensus 1023 ~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-------------~~---------~~~~~~k-~~~l~ 1070 (1493)
+.....+...+... ..++.+..... ....+... +. .+....+ ...+.
T Consensus 294 ~~RpvPL~~~~~~~-~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~ 372 (1041)
T COG4581 294 EHRPVPLEHFVYVG-KGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVN 372 (1041)
T ss_pred cCCCCCeEEEEecC-CceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHh
Confidence 10000110101000 11111111100 00000000 00 0011111 11222
Q ss_pred HHHHhCCCcEEEEecchhhHHHHHHHHHhc----------------------------C-------------CCcccccc
Q psy16310 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTML----------------------------K-------------CSPLPLHA 1109 (1493)
Q Consensus 1071 ~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~----------------------------~-------------~~~~~lhg 1109 (1493)
.+.....-++|+||-++..|+..+..+..+ + -.+++||+
T Consensus 373 ~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~ 452 (1041)
T COG4581 373 KLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHA 452 (1041)
T ss_pred hhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhcc
Confidence 222334568999999999999888776421 1 13457999
Q ss_pred CCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEE----Eec----CCCChhHHHHHHhccCCCCC--CCeEEE
Q psy16310 1110 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI----HYH----VPRTSEIYIHRSGRTARANN--EGLTLV 1179 (1493)
Q Consensus 1110 ~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI----~~d----~p~s~~~yiqr~GR~gR~g~--~G~~i~ 1179 (1493)
+|-+..|..+...|..|-+.|++||.+++.|+|.|.-++|+ .|| .+-+...|.|+.|||||.|- .|.+|+
T Consensus 453 GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~ 532 (1041)
T COG4581 453 GLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIV 532 (1041)
T ss_pred ccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEE
Confidence 99999999999999999999999999999999999877776 233 23467889999999999986 577777
Q ss_pred EecCC
Q psy16310 1180 LIESD 1184 (1493)
Q Consensus 1180 l~~~~ 1184 (1493)
+-.+.
T Consensus 533 ~~~~~ 537 (1041)
T COG4581 533 IEPPF 537 (1041)
T ss_pred ecCCC
Confidence 74443
No 192
>KOG0926|consensus
Probab=99.91 E-value=2.3e-24 Score=251.63 Aligned_cols=344 Identities=22% Similarity=0.272 Sum_probs=215.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
.-+++++++-..+-+ .-. .++.. .++..+--+||||.||||||.. +-+.|+...-
T Consensus 243 ~R~~EIQ~sR~~LPI--~ae-Eq~IM-EaIn~n~vvIIcGeTGsGKTTQ----vPQFLYEAGf----------------- 297 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPI--VAE-EQRIM-EAINENPVVIICGETGSGKTTQ----VPQFLYEAGF----------------- 297 (1172)
T ss_pred cCcHHHHHHHhcCch--hHH-HHHHH-HHhhcCCeEEEecCCCCCcccc----chHHHHHccc-----------------
Confidence 445556555444422 111 12333 4777777789999999999997 3345554211
Q ss_pred HHHHHHHHhhhcchhhhhcc-cCceEEEEEcccHHHHHHHH-HHHHHhcC-CCCeEEEEEEcCCCHHHHHHHhcCCCCEE
Q psy16310 237 EVLEELEEESANTTEFVKKT-RNKLYALILAPTRELAIQVQ-NHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHIL 313 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~-~~~~~aLiL~PTreLa~Qi~-~~~~~l~~-~~~i~v~~~~G~~~~~~~~~~l~~~~~Ii 313 (1493)
.... ..+..+=|.-|.|--|.-+. ++..+++. ...+...+.+.++... ...|.
T Consensus 298 ----------------~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti~e--------~T~Ik 353 (1172)
T KOG0926|consen 298 ----------------ASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTIGE--------DTSIK 353 (1172)
T ss_pred ----------------CCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEeccccCC--------CceeE
Confidence 1111 12335667778887776654 45566665 2336667777665432 34899
Q ss_pred EeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhcc
Q psy16310 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393 (1493)
Q Consensus 314 V~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (1493)
++|.|.|+..|.+++. |.+++.||+||||.- .-+.+.+-.+|.++-... ....
T Consensus 354 FMTDGVLLrEi~~Dfl----L~kYSvIIlDEAHER--SvnTDILiGmLSRiV~LR---------------------~k~~ 406 (1172)
T KOG0926|consen 354 FMTDGVLLREIENDFL----LTKYSVIILDEAHER--SVNTDILIGMLSRIVPLR---------------------QKYY 406 (1172)
T ss_pred EecchHHHHHHHHhHh----hhhceeEEechhhhc--cchHHHHHHHHHHHHHHH---------------------HHHh
Confidence 9999999999998765 668999999999975 234555666666553221 1111
Q ss_pred -ccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhc
Q psy16310 394 -MTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472 (1493)
Q Consensus 394 -~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1493)
..+.-.+..+|+||||+.-. .+. ....++.+..| ++.+. ..+.++.
T Consensus 407 ke~~~~kpLKLIIMSATLRVs--DFt--------------------enk~LFpi~pP-likVd--------ARQfPVs-- 453 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRVS--DFT--------------------ENKRLFPIPPP-LIKVD--------ARQFPVS-- 453 (1172)
T ss_pred hhhcccCceeEEEEeeeEEec--ccc--------------------cCceecCCCCc-eeeee--------cccCceE--
Confidence 11234578999999999521 111 00011111111 11100 0000000
Q ss_pred cCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEec
Q psy16310 473 HDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 552 (1493)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~ 552 (1493)
.+|....+...+.+.++....++ . .-.+|.+|||+.
T Consensus 454 --------IHF~krT~~DYi~eAfrKtc~IH---------------------------~---------kLP~G~ILVFvT 489 (1172)
T KOG0926|consen 454 --------IHFNKRTPDDYIAEAFRKTCKIH---------------------------K---------KLPPGGILVFVT 489 (1172)
T ss_pred --------EEeccCCCchHHHHHHHHHHHHh---------------------------h---------cCCCCcEEEEEe
Confidence 11112222222233332222211 1 113689999999
Q ss_pred chhhHHHHHHHHHhc-----------------------------------------------------------------
Q psy16310 553 SISSVKRLTQLLTML----------------------------------------------------------------- 567 (1493)
Q Consensus 553 s~~~a~~L~~~L~~~----------------------------------------------------------------- 567 (1493)
...++..|++.|+..
T Consensus 490 GQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~ 569 (1172)
T KOG0926|consen 490 GQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFN 569 (1172)
T ss_pred ChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhh
Confidence 999999999888221
Q ss_pred ----------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCC
Q psy16310 568 ----------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613 (1493)
Q Consensus 568 ----------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v 613 (1493)
..-|+++++-++...|.+++..-..|..-|+|||+||+..|.||+|
T Consensus 570 ~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgI 649 (1172)
T KOG0926|consen 570 ALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGI 649 (1172)
T ss_pred ccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCe
Confidence 0224567888999999999999999999999999999999999999
Q ss_pred cEEEE--------ecCCCChHHH----------HHHHhccccCCCCCeEEEEecCCcch
Q psy16310 614 EHVIH--------YHVPRTSEIY----------IHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 614 ~~VI~--------yd~P~s~~~y----------iQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
.+||. ||--+++..| -||+|||||.| +|+||.||++.-..
T Consensus 650 kYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~ 707 (1172)
T KOG0926|consen 650 KYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFS 707 (1172)
T ss_pred eEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhh
Confidence 99995 6766666666 59999999998 99999999886554
No 193
>KOG0950|consensus
Probab=99.91 E-value=9.3e-24 Score=254.70 Aligned_cols=364 Identities=20% Similarity=0.220 Sum_probs=252.9
Q ss_pred CCHHHH-HHHHHCCCCCCcHHHHhhH--HHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHH
Q psy16310 775 IPETII-RALYQKGFKTPTKIQSMVM--PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851 (1493)
Q Consensus 775 l~~~l~-~~l~~~g~~~pt~iQ~~~i--~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 851 (1493)
+++.+. -..+..|...+..+|..|+ |. +.+++|+|..+||+.|||+++-+.++..++..+
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~-~~e~~nliys~Pts~gktlvaeilml~~~l~~r---------------- 269 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPR-LLERKNLIYSLPTSAGKTLVAEILMLREVLCRR---------------- 269 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchh-hhcccceEEeCCCccchHHHHHHHHHHHHHHHh----------------
Confidence 444444 4456679999999999997 43 448899999999999999999999998876432
Q ss_pred HHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEE
Q psy16310 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931 (1493)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV 931 (1493)
..++.+.|....+..-...+..++..+|+.+...+|........ +..++.|
T Consensus 270 -------------------------r~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i 320 (1008)
T KOG0950|consen 270 -------------------------RNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAI 320 (1008)
T ss_pred -------------------------hceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeee
Confidence 25899999999999999999999999999999888766554332 2347999
Q ss_pred ECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc--hHhHHhh
Q psy16310 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS--LKNSLNL 1009 (1493)
Q Consensus 932 ~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~--~~~~~~~ 1009 (1493)
||-++-..++..- +.-..+..+++||+||-|.+.+.+.+..++.++..+.........|++++|||+++. +..++..
T Consensus 321 ~tiEkanslin~l-ie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A 399 (1008)
T KOG0950|consen 321 ATIEKANSLINSL-IEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDA 399 (1008)
T ss_pred eehHhhHhHHHHH-HhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhh
Confidence 9999876655331 112245578999999999999999999999999988766555668899999999953 3333321
Q ss_pred hccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec---ccchhhHHHHHHHhCCCcEEEEecc
Q psy16310 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK---HDEKDSYLYYFILQHPGRTLVFCNS 1086 (1493)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~k~~~l~~~l~~~~~~~IVF~~s 1086 (1493)
.........+ .+...... ...++... .......+...+.... +.+-...+..-....+.++||||++
T Consensus 400 ~~y~t~fRPv--------~L~E~ik~-G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~s 469 (1008)
T KOG0950|consen 400 FVYTTRFRPV--------PLKEYIKP-GSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPS 469 (1008)
T ss_pred hheecccCcc--------cchhccCC-Ccccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCc
Confidence 1100000000 00000000 00011110 0000001100000000 0011111122222335679999999
Q ss_pred hhhHHHHHHHHHhc--------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCC
Q psy16310 1087 ISSVKRLTQLLTML--------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNN 1128 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~--------------------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~ 1128 (1493)
+..|+.++..+... ..+++.+|++++..+|..+...|+.|.+
T Consensus 470 k~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i 549 (1008)
T KOG0950|consen 470 KKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNI 549 (1008)
T ss_pred ccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCe
Confidence 99999888655211 2567789999999999999999999999
Q ss_pred CeEEeehhhhccccCCCccEEEEec----CCCChhHHHHHHhccCCCCC--CCeEEEEecCCCHHHHHHHHHh
Q psy16310 1129 SILLATDVAARGLDIPGIEHVIHYH----VPRTSEIYIHRSGRTARANN--EGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1129 ~VLVaTdv~~~GiDip~v~~VI~~d----~p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
.|++||++++.|++.|..+++|-+- ...+...|.||+|||||+|- .|.+++++.+.+...++.+.+.
T Consensus 550 ~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~ 622 (1008)
T KOG0950|consen 550 FVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNS 622 (1008)
T ss_pred EEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhc
Confidence 9999999999999999999998532 12467889999999999964 6999999999998887776654
No 194
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2.4e-22 Score=248.02 Aligned_cols=350 Identities=17% Similarity=0.204 Sum_probs=226.5
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
|. .|+++|.-.-- ++..| -|+.++||.|||++|.+|++...+.+
T Consensus 80 gm-~~ydVQliGgl-~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g-------------------------------- 123 (908)
T PRK13107 80 EM-RHFDVQLLGGM-VLDSN--RIAEMRTGEGKTLTATLPAYLNALTG-------------------------------- 123 (908)
T ss_pred CC-CcCchHHhcch-HhcCC--ccccccCCCCchHHHHHHHHHHHhcC--------------------------------
Confidence 43 67888987763 55554 48899999999999999998665432
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhCc
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLGH 945 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~~ 945 (1493)
..|.||+|+++||.|.++.+..+..++|+++.++.++.+.... .-...+||++|||++| .|+|+.+.
T Consensus 124 ----------~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm 191 (908)
T PRK13107 124 ----------KGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNM 191 (908)
T ss_pred ----------CCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccC
Confidence 2399999999999999999999999999999999999886433 2234689999999999 88887652
Q ss_pred -Cccc--cccceeEEEecccchhccCC----------------ChhHHHHHHHHhcccC--------------CCCCceE
Q psy16310 946 -FHLT--ELYKINYLVIDETDRMIESG----------------HFPELKNILDRVTMTE--------------TSQPRQT 992 (1493)
Q Consensus 946 -~~~~--~l~~l~~lVlDEah~ll~~~----------------~~~~l~~il~~l~~~~--------------~~~~~q~ 992 (1493)
.... -...+.++|+||||.|+-+. .+..+..++..|.... .......
T Consensus 192 ~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~ 271 (908)
T PRK13107 192 AFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQ 271 (908)
T ss_pred ccchhhhhccccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCe
Confidence 1111 12568899999999975332 1233333333332100 0011112
Q ss_pred EEEecc--------c--------------------ccchHhHHhhhc--cCcCc---------------ccccCCC----
Q psy16310 993 FVFSAT--------L--------------------THSLKNSLNLKK--GQSKS---------------KKVSKGD---- 1023 (1493)
Q Consensus 993 ll~SAT--------l--------------------~~~~~~~~~~~~--~~~~~---------------~~~~~~~---- 1023 (1493)
+.++-. + .+.+...+.... ..... ..+..+.
T Consensus 272 v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsd 351 (908)
T PRK13107 272 VHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSE 351 (908)
T ss_pred eeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccch
Confidence 222210 0 000111110000 00000 0000000
Q ss_pred --------------------------chhHHHH---------------hHhccCCCcEEeccccccccccceeeEEEecc
Q psy16310 1024 --------------------------PSIKRLQ---------------DLLNIKSPKIVDLTEKIGITKTLTESKILCKH 1062 (1493)
Q Consensus 1024 --------------------------~~~~~l~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1493)
.++..++ .+..+..-.++.+.........-....+....
T Consensus 352 GLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~ 431 (908)
T PRK13107 352 GLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTA 431 (908)
T ss_pred HHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCH
Confidence 0000000 00111111111111111111111111233334
Q ss_pred cchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhc
Q psy16310 1063 DEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139 (1493)
Q Consensus 1063 ~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~ 1139 (1493)
..|...++..+. ..+.++||||+|+..++.++..|...|+....+|+.+.+.+|..+.+.|+.|. |+|||++++|
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGR 509 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGR 509 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCC
Confidence 556555555443 44789999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cccCC-------------------------------------CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1140 GLDIP-------------------------------------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1140 GiDip-------------------------------------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
|+||. +=-|||--..+.|..-=-|-.||+||-|.+|.+..|++
T Consensus 510 GTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lS 589 (908)
T PRK13107 510 GTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLS 589 (908)
T ss_pred CcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEE
Confidence 99995 11378888888888888999999999999999999987
Q ss_pred CCCH
Q psy16310 1183 SDEI 1186 (1493)
Q Consensus 1183 ~~e~ 1186 (1493)
-.|.
T Consensus 590 lED~ 593 (908)
T PRK13107 590 MEDS 593 (908)
T ss_pred eCcH
Confidence 6553
No 195
>KOG0950|consensus
Probab=99.91 E-value=1.8e-23 Score=252.22 Aligned_cols=367 Identities=21% Similarity=0.225 Sum_probs=244.0
Q ss_pred CCHHH-HHHHHHCCCCCChHHHHhhhh-hhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHH
Q psy16310 158 IPETI-IRALYQKGFKTPTKIQSMVMP-SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 235 (1493)
Q Consensus 158 l~~~l-~~~l~~~g~~~pt~iQ~~~i~-~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 235 (1493)
+++.+ .-.....|+..++.||.+++- ..+++++|+|..+||+.|||+++-+-++..++-
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~------------------- 267 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC------------------- 267 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH-------------------
Confidence 34444 344566799999999999973 134588999999999999999999988877753
Q ss_pred HHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEe
Q psy16310 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 315 (1493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~ 315 (1493)
.+..++++.|-..-++.-...+..++...|+.|-+++|........ +.-++.||
T Consensus 268 ----------------------~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~ 321 (1008)
T KOG0950|consen 268 ----------------------RRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIA 321 (1008)
T ss_pred ----------------------HhhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeee
Confidence 2235899999999999988889999999999999999876654432 23479999
Q ss_pred CcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhcccc
Q psy16310 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395 (1493)
Q Consensus 316 TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1493)
|-++-..++..- +.-..+..+.+||+||-|.+.+.+.+..++.++..+.....
T Consensus 322 tiEkanslin~l-ie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~-------------------------- 374 (1008)
T KOG0950|consen 322 TIEKANSLINSL-IEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENL-------------------------- 374 (1008)
T ss_pred ehHhhHhHHHHH-HhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhcc--------------------------
Confidence 999865544321 12223446899999999999999999999999987643311
Q ss_pred CCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCC
Q psy16310 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 475 (1493)
Q Consensus 396 ~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1493)
....|+|++|||+++.- .+.+|+...-. ...+. +..+.+.. .+..
T Consensus 375 --~~~~~iIGMSATi~N~~------------------------lL~~~L~A~~y-----~t~fR-Pv~L~E~i-k~G~-- 419 (1008)
T KOG0950|consen 375 --ETSVQIIGMSATIPNNS------------------------LLQDWLDAFVY-----TTRFR-PVPLKEYI-KPGS-- 419 (1008)
T ss_pred --ccceeEeeeecccCChH------------------------HHHHHhhhhhe-----ecccC-cccchhcc-CCCc--
Confidence 12278999999998531 22222220000 00000 00000000 0000
Q ss_pred cchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchh
Q psy16310 476 KDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555 (1493)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~ 555 (1493)
..+-. . .....+.+...+. .... ..+.+.- -.++.-....+.++||||+++.
T Consensus 420 ----~i~~~---~---r~~~lr~ia~l~~-------------~~~g----~~dpD~~-v~L~tet~~e~~~~lvfc~sk~ 471 (1008)
T KOG0950|consen 420 ----LIYES---S---RNKVLREIANLYS-------------SNLG----DEDPDHL-VGLCTETAPEGSSVLVFCPSKK 471 (1008)
T ss_pred ----ccccc---h---hhHHHHHhhhhhh-------------hhcc----cCCCcce-eeehhhhhhcCCeEEEEcCccc
Confidence 00000 0 0000000000000 0000 0000000 1111112233457999999999
Q ss_pred hHHHHHHHHHh--------------------------------------cCCCccccccCCCHHHHHHHHHHHhcCCCeE
Q psy16310 556 SVKRLTQLLTM--------------------------------------LKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597 (1493)
Q Consensus 556 ~a~~L~~~L~~--------------------------------------~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~V 597 (1493)
.|+.++..+.. ...+++.+|+|++..+|..+...|+.|.+.|
T Consensus 472 ~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~v 551 (1008)
T KOG0950|consen 472 NCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFV 551 (1008)
T ss_pred chHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEE
Confidence 99988765511 1356788999999999999999999999999
Q ss_pred EEEechhhccCCCCCCcEEEEec----CCCChHHHHHHHhccccCCCC--CeEEEEecCCcchhhhhh
Q psy16310 598 LLATDVAARGLDIPGIEHVIHYH----VPRTSEIYIHRSGRTARANNE--GLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 598 LVaTdv~~rGlDip~v~~VI~yd----~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~e~~~~~~l 659 (1493)
++||+.++.|+++|..+++|..- .+.+...|.||+|||||+|.. |.+++++.+.|...+..+
T Consensus 552 l~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 552 LVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred EEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 99999999999999999988642 235678899999999999875 999999999987766554
No 196
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=6.9e-23 Score=268.49 Aligned_cols=324 Identities=16% Similarity=0.201 Sum_probs=194.7
Q ss_pred CCCcHHHHhhHHHhh---c-cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 789 KTPTKIQSMVMPSAL---L-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l---~-~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
..++++|..||..+. . +.+.++++++||||||.+++ .++..++..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~------------------------------ 460 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA------------------------------ 460 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc------------------------------
Confidence 358999999997544 2 34689999999999998844 344444321
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~ 944 (1493)
....++|||||+++|+.|+.+.|..+.......+..+++....... .......|+|+|...|...+...
T Consensus 461 ---------~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~ 529 (1123)
T PRK11448 461 ---------KRFRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYS 529 (1123)
T ss_pred ---------CccCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhcc
Confidence 2234799999999999999999988743222122222221111111 11234589999999987765322
Q ss_pred cCc--cccccceeEEEecccchhcc------C---C------ChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 945 HFH--LTELYKINYLVIDETDRMIE------S---G------HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 945 ~~~--~~~l~~l~~lVlDEah~ll~------~---~------~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
... ...+.++++||+||||+-.. . + +...+..++..+ +...++||||+.......+
T Consensus 530 ~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF-------dA~~IGLTATP~r~t~~~F 602 (1123)
T PRK11448 530 DDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF-------DAVKIGLTATPALHTTEIF 602 (1123)
T ss_pred ccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc-------CccEEEEecCCccchhHHh
Confidence 111 12345678999999999531 0 1 134556666643 2467999999975432221
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccC---CCcEEec--c-------ccc--c----ccccceeeEE------Eec--
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIK---SPKIVDL--T-------EKI--G----ITKTLTESKI------LCK-- 1061 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~--~-------~~~--~----~~~~~~~~~~------~~~-- 1061 (1493)
+.. +... .+......-.+- .|..+.. . ... . ....+..... ...
T Consensus 603 ----G~p----v~~Y--sl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~ 672 (1123)
T PRK11448 603 ----GEP----VYTY--SYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDF 672 (1123)
T ss_pred ----CCe----eEEe--eHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHH
Confidence 100 0000 011110000010 0111110 0 000 0 0000000000 000
Q ss_pred -----ccchhhH----HHHHHH-hCCCcEEEEecchhhHHHHHHHHHhc------CC---CccccccCCCHHHHHHHHHH
Q psy16310 1062 -----HDEKDSY----LYYFIL-QHPGRTLVFCNSISSVKRLTQLLTML------KC---SPLPLHASMNQRQRLKNLDR 1122 (1493)
Q Consensus 1062 -----~~~k~~~----l~~~l~-~~~~~~IVF~~s~~~~~~l~~~L~~~------~~---~~~~lhg~m~~~~R~~~~~~ 1122 (1493)
....... +...+. ..++++||||.++.+|+.++..|... +. .+..+||+++ ++..++++
T Consensus 673 ~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~ 750 (1123)
T PRK11448 673 NRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRR 750 (1123)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHH
Confidence 0000111 111111 12579999999999999999887653 22 3445888876 46789999
Q ss_pred HhcCCC-CeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1123 FRDQNN-SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1123 F~~g~~-~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
|+++.. .|+|+++++.+|+|+|.|.+||.++++.|...|+||+||+.|...
T Consensus 751 Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 751 FKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred HhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 999887 599999999999999999999999999999999999999999743
No 197
>KOG0948|consensus
Probab=99.91 E-value=3.3e-24 Score=249.13 Aligned_cols=341 Identities=18% Similarity=0.172 Sum_probs=230.8
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
++-|+|..+|- .+..+.++++.|.|.+|||.++-.+|...+-
T Consensus 129 ~LDpFQ~~aI~-Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr------------------------------------- 170 (1041)
T KOG0948|consen 129 TLDPFQSTAIK-CIDRGESVLVSAHTSAGKTVVAEYAIAMSLR------------------------------------- 170 (1041)
T ss_pred ccCchHhhhhh-hhcCCceEEEEeecCCCcchHHHHHHHHHHH-------------------------------------
Confidence 56799999995 7888999999999999999998887776552
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~ 949 (1493)
.+-+++|-.|-++|-+|-|+.+..-+ -.|++.+|+..... .+..+|+|.+.|..++.+|.-
T Consensus 171 -----~kQRVIYTSPIKALSNQKYREl~~EF----~DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSE--- 231 (1041)
T KOG0948|consen 171 -----EKQRVIYTSPIKALSNQKYRELLEEF----KDVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSE--- 231 (1041)
T ss_pred -----hcCeEEeeChhhhhcchhHHHHHHHh----cccceeecceeeCC-------CCceeeeHHHHHHHHHhccch---
Confidence 23379999999999999999987754 34667777665433 356899999999999988763
Q ss_pred cccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH--hHHhhhccCcCcccccCCCchhH
Q psy16310 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK--NSLNLKKGQSKSKKVSKGDPSIK 1027 (1493)
Q Consensus 950 ~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1493)
-++.+..+||||+|-|-+...+-.++.-+-.+ |.+...+++|||+|+... +|+.....++-........ ..
T Consensus 232 vmrEVaWVIFDEIHYMRDkERGVVWEETIIll-----P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyR--PT 304 (1041)
T KOG0948|consen 232 VMREVAWVIFDEIHYMRDKERGVVWEETIILL-----PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYR--PT 304 (1041)
T ss_pred HhheeeeEEeeeehhccccccceeeeeeEEec-----cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCC--CC
Confidence 35679999999999998887665555544334 578899999999998654 3443222222211111111 11
Q ss_pred HHHhHhccC-CCc---EEeccccccc------cccce----------------eeEE--EecccchhhHHHHHH-HhCCC
Q psy16310 1028 RLQDLLNIK-SPK---IVDLTEKIGI------TKTLT----------------ESKI--LCKHDEKDSYLYYFI-LQHPG 1078 (1493)
Q Consensus 1028 ~l~~~~~~~-~~~---~~~~~~~~~~------~~~~~----------------~~~~--~~~~~~k~~~l~~~l-~~~~~ 1078 (1493)
.+++++.-. ... +++-...... ...+. .... ..+.+.....++..+ .....
T Consensus 305 PLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~ 384 (1041)
T KOG0948|consen 305 PLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYL 384 (1041)
T ss_pred cceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCC
Confidence 111111110 111 1111000000 00000 0000 001111122333333 34467
Q ss_pred cEEEEecchhhHHHHHHHHHhc---------------------------------------CCCccccccCCCHHHHHHH
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTML---------------------------------------KCSPLPLHASMNQRQRLKN 1119 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~---------------------------------------~~~~~~lhg~m~~~~R~~~ 1119 (1493)
++|||+-+++.|+.+|..+..+ ..++.+||||+-+--++-+
T Consensus 385 PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~I 464 (1041)
T KOG0948|consen 385 PVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVI 464 (1041)
T ss_pred ceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHH
Confidence 9999999999999999887543 1346779999999999999
Q ss_pred HHHHhcCCCCeEEeehhhhccccCCCccEEEE----ecCC----CChhHHHHHHhccCCCCC--CCeEEEEecCC-CHHH
Q psy16310 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIH----YHVP----RTSEIYIHRSGRTARANN--EGLTLVLIESD-EIPL 1188 (1493)
Q Consensus 1120 ~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~----~d~p----~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~-e~~~ 1188 (1493)
.-.|..|-++||+||.+++.|+|.|.-++|+- ||-- -+.-.|+|+.|||||.|. .|.+|++++.. +-..
T Consensus 465 EILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ 544 (1041)
T KOG0948|consen 465 EILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQV 544 (1041)
T ss_pred HHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHH
Confidence 99999999999999999999999999888874 3322 244579999999999986 68888888765 3344
Q ss_pred HHHHHH
Q psy16310 1189 YIKMFN 1194 (1493)
Q Consensus 1189 ~~~~~~ 1194 (1493)
.+.+++
T Consensus 545 ak~m~k 550 (1041)
T KOG0948|consen 545 AKDMLK 550 (1041)
T ss_pred HHHHhc
Confidence 455543
No 198
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=2.6e-22 Score=251.05 Aligned_cols=322 Identities=19% Similarity=0.197 Sum_probs=229.0
Q ss_pred cCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhc-----cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 156 FNIPETIIRALYQ-KGFKTPTKIQSMVMPSALL-----ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 156 l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~-----~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
++.+......+.+ .+| .-|+-|..||..... ...|-++||..|-|||-+++-.++-.+
T Consensus 577 f~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV--------------- 640 (1139)
T COG1197 577 FPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV--------------- 640 (1139)
T ss_pred CCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh---------------
Confidence 3455556655544 366 479999999974442 146899999999999999888877555
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh---
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL--- 306 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l--- 306 (1493)
..+.+|.|||||.-||+|.++.|++...+++++|..+.--.+.+++...+
T Consensus 641 ---------------------------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~l 693 (1139)
T COG1197 641 ---------------------------MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGL 693 (1139)
T ss_pred ---------------------------cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHH
Confidence 24578999999999999999999999999999999998877777665544
Q ss_pred -cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 307 -NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 307 -~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
.+..||||+|.-.| +..+. |.++.+|||||-|+.- -...+.+..+-
T Consensus 694 a~G~vDIvIGTHrLL-----~kdv~---FkdLGLlIIDEEqRFG-Vk~KEkLK~Lr------------------------ 740 (1139)
T COG1197 694 AEGKVDIVIGTHRLL-----SKDVK---FKDLGLLIIDEEQRFG-VKHKEKLKELR------------------------ 740 (1139)
T ss_pred hcCCccEEEechHhh-----CCCcE---EecCCeEEEechhhcC-ccHHHHHHHHh------------------------
Confidence 34589999998766 22333 5588999999999873 33333443332
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccc
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1493)
...-++-+|||+=+...++. +.+++.-.++.....-+++
T Consensus 741 -------------~~VDvLTLSATPIPRTL~Ms------------------------m~GiRdlSvI~TPP~~R~p---- 779 (1139)
T COG1197 741 -------------ANVDVLTLSATPIPRTLNMS------------------------LSGIRDLSVIATPPEDRLP---- 779 (1139)
T ss_pred -------------ccCcEEEeeCCCCcchHHHH------------------------HhcchhhhhccCCCCCCcc----
Confidence 33568899999633221111 0000000000000000000
Q ss_pred hhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH-h--h
Q psy16310 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-L--Q 542 (1493)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l-~--~ 542 (1493)
+ ..++... -..++...+ . .
T Consensus 780 ---V-----------------------------------------------------~T~V~~~--d~~~ireAI~REl~ 801 (1139)
T COG1197 780 ---V-----------------------------------------------------KTFVSEY--DDLLIREAILRELL 801 (1139)
T ss_pred ---e-----------------------------------------------------EEEEecC--ChHHHHHHHHHHHh
Confidence 0 0000000 001111111 1 2
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd 620 (1493)
.+|++-.-+|..++.+.++..|+.+ ...+++.||.|+..+-.+++..|-+|+.+|||||.+.+.|||||++|.+|..+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIER 881 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEec
Confidence 3678888889999999999999887 56788899999999999999999999999999999999999999999999776
Q ss_pred CC-CChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 621 VP-RTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 621 ~P-~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
.- .......|-.||+||..+.++||++|.+..
T Consensus 882 AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 882 ADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred cccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 55 457889999999999999999999997654
No 199
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=1.5e-22 Score=265.23 Aligned_cols=94 Identities=21% Similarity=0.441 Sum_probs=82.1
Q ss_pred CCcEEEEecchhhHHHHHHHHHhc------CC---CccccccCCCHHHHHHHHHHHhcCCC-eEEEEechhhccCCCCCC
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTML------KC---SPLPLHASMNQRQRLKNLDRFRDQNN-SILLATDVAARGLDIPGI 613 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~------~~---~~~~lhg~~~~~~R~~vl~~Fr~g~~-~VLVaTdv~~rGlDip~v 613 (1493)
++++||||.++.+|+.++..|... +. .+..+||+++ ++..+++.|+++.. .|+|+++++.+|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 479999999999999999887653 12 3455888875 45679999999987 699999999999999999
Q ss_pred cEEEEecCCCChHHHHHHHhccccCC
Q psy16310 614 EHVIHYHVPRTSEIYIHRSGRTARAN 639 (1493)
Q Consensus 614 ~~VI~yd~P~s~~~yiQR~GRagR~g 639 (1493)
.+||.++++.|...|+||+||+.|..
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999964
No 200
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=7.3e-23 Score=252.53 Aligned_cols=420 Identities=15% Similarity=0.175 Sum_probs=245.0
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|.-.-- +|.. --|+.++||.|||++|.+|++...+
T Consensus 80 gm-~~ydVQliGgl-~L~~--G~IaEm~TGEGKTL~a~lp~~l~al---------------------------------- 121 (908)
T PRK13107 80 EM-RHFDVQLLGGM-VLDS--NRIAEMRTGEGKTLTATLPAYLNAL---------------------------------- 121 (908)
T ss_pred CC-CcCchHHhcch-HhcC--CccccccCCCCchHHHHHHHHHHHh----------------------------------
Confidence 54 68899986653 5544 4588999999999999999985553
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC-
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG- 327 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~- 327 (1493)
.+..|.||+|+..||.|..+++..+..++|+++++++++.+....... -.+||+++||+.| .++|..+
T Consensus 122 --------~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm 191 (908)
T PRK13107 122 --------TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNM 191 (908)
T ss_pred --------cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccC
Confidence 223499999999999999999999999999999999999886443222 2579999999999 8888765
Q ss_pred Cccc--cccccccEEEEecCchhhhcC-C---------------hhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 328 HFHL--TELYKINYLVIDETDRMIESG-H---------------FPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 328 ~~~~--~~l~~i~~lViDEAh~ll~~~-~---------------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
.... .....+.++||||||.+|-+. . +..+..++..+....... ........+
T Consensus 192 ~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~-~~~~~~~~d-------- 262 (908)
T PRK13107 192 AFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKED-TEEYVGEGD-------- 262 (908)
T ss_pred ccchhhhhccccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhcc-ccccCCCCC--------
Confidence 1111 112568899999999987432 1 112222222222100000 000000000
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccc--cccccccCCC-chhhhHHhhh------hccC------Ccccch
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ--SKSKKVSKGD-PSIKRLQDLL------NIKS------PKIVDL 454 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~------~~~~------~~~~~~ 454 (1493)
+.. ....+.+.++-.=...+..++.. .+. .......... .....+...+ .... ..+.-+
T Consensus 263 --y~i---dek~~~v~LTe~G~~~~e~~l~~-~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IV 336 (908)
T PRK13107 263 --YSI---DEKAKQVHFTERGQEKVENLLIE-RGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIV 336 (908)
T ss_pred --EEE---ecCCCeeeechHHHHHHHHHHHh-CCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEE
Confidence 000 01111222211100111111100 000 0000000000 0000011100 0000 000000
Q ss_pred ---hhhhcccccc----chhh------hhhcc---CCcchhhH----HHHhcCCCcchhhHHHhhhhccCCccccccccc
Q psy16310 455 ---TEKIGITKTL----TESK------ILCKH---DEKDSYLY----YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514 (1493)
Q Consensus 455 ---~~~~~~~~~~----~~~~------~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1493)
++.......+ .+.. .+... ...-.+.. |.-...-..+.......+...+.-.+.......
T Consensus 337 De~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnk 416 (908)
T PRK13107 337 DEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNR 416 (908)
T ss_pred ECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCC
Confidence 0000000000 0000 00000 00011111 111112223333334455555555555544444
Q ss_pred cccccccccccccccCchhhHHHHHHh---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHh
Q psy16310 515 GITKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 591 (1493)
Q Consensus 515 ~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr 591 (1493)
..........++.....|...+...+. ..+.++||||+|...++.++.+|...++....+|+.+++.++..+.+.|+
T Consensus 417 p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~ 496 (908)
T PRK13107 417 PMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGR 496 (908)
T ss_pred CccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCC
Confidence 433333334455555667766665554 34679999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEechhhccCCCCC--------------------------------C-----cEEEEecCCCChHHHHHHHhc
Q psy16310 592 DQNNSILLATDVAARGLDIPG--------------------------------I-----EHVIHYHVPRTSEIYIHRSGR 634 (1493)
Q Consensus 592 ~g~~~VLVaTdv~~rGlDip~--------------------------------v-----~~VI~yd~P~s~~~yiQR~GR 634 (1493)
.|. |+|||++|+||+||.= | =+||-...+.|..-=-|-.||
T Consensus 497 ~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGR 574 (908)
T PRK13107 497 TGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGR 574 (908)
T ss_pred CCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcc
Confidence 998 9999999999999951 1 178888899998888999999
Q ss_pred cccCCCCCeEEEEecCCcch
Q psy16310 635 TARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 635 agR~g~~G~~i~l~~~~e~~ 654 (1493)
+||-|.+|.+-.|++-+|--
T Consensus 575 aGRQGDPGss~f~lSlED~L 594 (908)
T PRK13107 575 AGRQGDAGSSRFYLSMEDSL 594 (908)
T ss_pred cccCCCCCceeEEEEeCcHH
Confidence 99999999999999877643
No 201
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.6e-21 Score=209.23 Aligned_cols=300 Identities=18% Similarity=0.235 Sum_probs=201.0
Q ss_pred CCcHHHHhhHHHh---hccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 790 TPTKIQSMVMPSA---LLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~---l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
++||.|..+-..+ +...+++++.|-||+|||.. +.+.++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al---------------------------------- 141 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQAL---------------------------------- 141 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHH----------------------------------
Confidence 6799999886533 34568999999999999986 334444333
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
..|.++.+.+|....|..++..+++.. .+..+.+++|+.....+ ..++|+|...|+.+-+
T Consensus 142 -------~~G~~vciASPRvDVclEl~~Rlk~aF--~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~---- 201 (441)
T COG4098 142 -------NQGGRVCIASPRVDVCLELYPRLKQAF--SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ---- 201 (441)
T ss_pred -------hcCCeEEEecCcccchHHHHHHHHHhh--ccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh----
Confidence 345679999999999999999998864 45778889998765443 3789999888766543
Q ss_pred ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchh
Q psy16310 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026 (1493)
Q Consensus 947 ~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1493)
.++++|+||+|-+.-. --..+..-++.. .....-++++|||.++.+...+....
T Consensus 202 ------aFD~liIDEVDAFP~~-~d~~L~~Av~~a----rk~~g~~IylTATp~k~l~r~~~~g~--------------- 255 (441)
T COG4098 202 ------AFDLLIIDEVDAFPFS-DDQSLQYAVKKA----RKKEGATIYLTATPTKKLERKILKGN--------------- 255 (441)
T ss_pred ------hccEEEEecccccccc-CCHHHHHHHHHh----hcccCceEEEecCChHHHHHHhhhCC---------------
Confidence 3689999999975321 112333333322 23556789999999987766542110
Q ss_pred HHHHhHhccCCCcEEeccccccccccceeeEEEecccch-------hhHHHHHHHh---CCCcEEEEecchhhHHHHHHH
Q psy16310 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-------DSYLYYFILQ---HPGRTLVFCNSISSVKRLTQL 1096 (1493)
Q Consensus 1027 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-------~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~ 1096 (1493)
...+.+........-....++.+....| ...+..++.. .+.+++||++++...+.++..
T Consensus 256 -----------~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~ 324 (441)
T COG4098 256 -----------LRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAA 324 (441)
T ss_pred -----------eeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHH
Confidence 0011111111111111111122222111 1244444443 367999999999999999999
Q ss_pred HHh-cCC-CccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC--CChhHHHHHHhccCCCC
Q psy16310 1097 LTM-LKC-SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP--RTSEIYIHRSGRTARAN 1172 (1493)
Q Consensus 1097 L~~-~~~-~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p--~s~~~yiqr~GR~gR~g 1172 (1493)
|+. .+. .+..+|+. ...|.+..++||+|++.+||+|.+++||+.+|+|+++|.-.-. -+-+.++|.+||+||.-
T Consensus 325 lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 325 LKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSL 402 (441)
T ss_pred HHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCC
Confidence 944 333 44677876 4678899999999999999999999999999999997742222 46788999999999984
Q ss_pred C--CCeEEEEecCC
Q psy16310 1173 N--EGLTLVLIESD 1184 (1493)
Q Consensus 1173 ~--~G~~i~l~~~~ 1184 (1493)
. .|.. +|+...
T Consensus 403 ~~PtGdv-~FFH~G 415 (441)
T COG4098 403 ERPTGDV-LFFHYG 415 (441)
T ss_pred cCCCCcE-EEEecc
Confidence 3 3444 444333
No 202
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.88 E-value=3.6e-21 Score=224.15 Aligned_cols=337 Identities=19% Similarity=0.233 Sum_probs=243.6
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeE----EEEEEc--------------CCCHHHHHHHhcC
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVK----VACVVG--------------GMSTEKQLRILNK 308 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~----v~~~~G--------------~~~~~~~~~~l~~ 308 (1493)
...++++++.++|+||||+|+|.-|.++.+.+..+.... .+. ...-+| .......+..+..
T Consensus 26 ~~~~~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~ 105 (442)
T PF06862_consen 26 DEDEFRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFS 105 (442)
T ss_pred ccchhhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcC
Confidence 456789999999999999999999999999988876541 000 000011 1112223333322
Q ss_pred C-------------------------CCEEEeCcHHHHHHHHc---CCccccccccccEEEEecCchhhhcCChhhHHHH
Q psy16310 309 C-------------------------PHILVATPGRLWEFIQL---GHFHLTELYKINYLVIDETDRMIESGHFPELKNI 360 (1493)
Q Consensus 309 ~-------------------------~~IiV~TP~~L~~~l~~---~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~i 360 (1493)
| .|||||+|-.|...+.. ...+.++|++|+++|+|.||.|+ |+.|+++..+
T Consensus 106 GN~DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v 184 (442)
T PF06862_consen 106 GNNDDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHV 184 (442)
T ss_pred CCccceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHH
Confidence 2 47999999999998875 45677789999999999999764 9999999999
Q ss_pred HHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhH
Q psy16310 361 LDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440 (1493)
Q Consensus 361 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (1493)
++.++..|. ..|.+++.+++.|+....+..-+|+|++|+..++++..+....-
T Consensus 185 ~~~lN~~P~---------~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~------------------ 237 (442)
T PF06862_consen 185 FEHLNLQPK---------KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHC------------------ 237 (442)
T ss_pred HHHhccCCC---------CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhC------------------
Confidence 999998765 35779999999999999999999999999999998877664211
Q ss_pred HhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccc
Q psy16310 441 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTL 520 (1493)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1493)
.+..+.............+.... +.+. .....+
T Consensus 238 -----------~N~~G~v~~~~~~~~~g~i~~v~------------------------------~~v~------Q~F~r~ 270 (442)
T PF06862_consen 238 -----------QNYAGKVRLKPPYEASGVISQVV------------------------------VQVR------QVFQRF 270 (442)
T ss_pred -----------cCccceEEEeeccccceeeeccc------------------------------cCCc------eEEEEe
Confidence 11111111111111000000000 0000 001112
Q ss_pred cccccccccCchhhHHHHHHh------hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC
Q psy16310 521 TESKILCKHDEKDSYLYYFIL------QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 594 (1493)
Q Consensus 521 ~~~~~~~~~~~k~~~l~~~l~------~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~ 594 (1493)
.........+.++.++...+. ...+++|||++|+-+..+|.++|+..++.++.+|.+.++.+-.++...|..|+
T Consensus 271 ~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~ 350 (442)
T PF06862_consen 271 DCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR 350 (442)
T ss_pred cCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC
Confidence 222333344555555544322 23479999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEechhh--ccCCCCCCcEEEEecCCCChHHHHHHHhccccCCC------CCeEEEEecCCcchhhhhh
Q psy16310 595 NSILLATDVAA--RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN------EGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 595 ~~VLVaTdv~~--rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~------~G~~i~l~~~~e~~~~~~l 659 (1493)
.+||+.|..++ +...|.++.+||.|++|..+..|-..++-.+.... .+.|.++++.-|...++.+
T Consensus 351 ~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 351 KPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred ceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99999999999 99999999999999999999999877765444332 4789999988776655554
No 203
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.88 E-value=1.3e-21 Score=208.79 Aligned_cols=165 Identities=32% Similarity=0.446 Sum_probs=138.0
Q ss_pred cHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhh
Q psy16310 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 871 (1493)
Q Consensus 792 t~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1493)
||+|.++++.++ +++++++.||||+|||++|.+|++..+...
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~------------------------------------- 42 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG------------------------------------- 42 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------------------------------------
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC-------------------------------------
Confidence 799999998655 789999999999999999999999877432
Q ss_pred ccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHH-HHHHHhcCCCcEEEECcHHHHHHHHhCcCcccc
Q psy16310 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE-KQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950 (1493)
Q Consensus 872 ~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~-~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~ 950 (1493)
...+++|++|+++|+.|+.+.+..++...++++..++|+.... .....+..+++|+|+||++|.+.+..+.. .
T Consensus 43 ---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~---~ 116 (169)
T PF00270_consen 43 ---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI---N 116 (169)
T ss_dssp ---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS---T
T ss_pred ---CCceEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccCcchhhcccccccc---c
Confidence 2237999999999999999999999888889999999999866 44455566789999999999999987443 3
Q ss_pred ccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 951 l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
+.++++|||||+|.+..+.+...+..++..+... .+.+++++|||++..+
T Consensus 117 ~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~---~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 117 ISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF---KNIQIILLSATLPSNV 166 (169)
T ss_dssp GTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT---TTSEEEEEESSSTHHH
T ss_pred cccceeeccCcccccccccHHHHHHHHHHHhcCC---CCCcEEEEeeCCChhH
Confidence 4569999999999999988888888888876432 3588999999998544
No 204
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.87 E-value=1.4e-21 Score=208.50 Aligned_cols=166 Identities=31% Similarity=0.446 Sum_probs=137.6
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhh
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1493)
||+|.++++.++ ++++++++||||+|||++|++|+++.+.+.
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~------------------------------------- 42 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG------------------------------------- 42 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------------------------------------
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC-------------------------------------
Confidence 799999998555 889999999999999999999999888541
Q ss_pred cccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHH-HHHHHhcCCCCEEEeCcHHHHHHHHcCCccccc
Q psy16310 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE-KQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333 (1493)
Q Consensus 255 ~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~-~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~ 333 (1493)
...++++++|+++|+.|+.+.+..++...++++..++|+.... .....+..+++|+|+||+.|.+++..... .
T Consensus 43 ---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~---~ 116 (169)
T PF00270_consen 43 ---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI---N 116 (169)
T ss_dssp ---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS---T
T ss_pred ---CCceEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccCcchhhcccccccc---c
Confidence 2237999999999999999999999988889999999998865 44445556789999999999999987444 2
Q ss_pred cccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchh
Q psy16310 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 413 (1493)
Q Consensus 334 l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~ 413 (1493)
+.++++|||||+|++..+.+...+..++..+... .+.|++++|||++..
T Consensus 117 ~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~-------------------------------~~~~~i~~SAT~~~~ 165 (169)
T PF00270_consen 117 ISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF-------------------------------KNIQIILLSATLPSN 165 (169)
T ss_dssp GTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT-------------------------------TTSEEEEEESSSTHH
T ss_pred cccceeeccCcccccccccHHHHHHHHHHHhcCC-------------------------------CCCcEEEEeeCCChh
Confidence 4469999999999999888888888888776422 246899999999855
Q ss_pred hh
Q psy16310 414 LK 415 (1493)
Q Consensus 414 ~~ 415 (1493)
+.
T Consensus 166 ~~ 167 (169)
T PF00270_consen 166 VE 167 (169)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 205
>KOG0922|consensus
Probab=99.87 E-value=3.4e-21 Score=225.92 Aligned_cols=308 Identities=19% Similarity=0.228 Sum_probs=200.5
Q ss_pred hhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCc
Q psy16310 180 MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259 (1493)
Q Consensus 180 ~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1493)
+.+. ++..++-+|+.|+||||||.. +-+.++... ....
T Consensus 58 ~il~-~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG-------------------------------------~~~~ 95 (674)
T KOG0922|consen 58 QILY-AVEDNQVLIVIGETGSGKSTQ----IPQYLAEAG-------------------------------------FASS 95 (674)
T ss_pred HHHH-HHHHCCEEEEEcCCCCCcccc----HhHHHHhcc-------------------------------------cccC
Confidence 4443 667788999999999999997 345554311 1122
Q ss_pred eEEEEEcccHHHHHHHHH-HHHHhcCCCCeEE--EEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccccccc
Q psy16310 260 LYALILAPTRELAIQVQN-HILDAGKYTPVKV--ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336 (1493)
Q Consensus 260 ~~aLiL~PTreLa~Qi~~-~~~~l~~~~~i~v--~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~ 336 (1493)
.++.+.-|.|--|.-++. +..+++...|-.| .+.+.+..... ..|.++|.|.|++.+..+.. |++
T Consensus 96 g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~--------TrikymTDG~LLRE~l~Dp~----Lsk 163 (674)
T KOG0922|consen 96 GKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKD--------TRIKYMTDGMLLREILKDPL----LSK 163 (674)
T ss_pred CcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCCCc--------eeEEEecchHHHHHHhcCCc----ccc
Confidence 347788888887777654 4555655555333 33344433322 37999999999998876543 778
Q ss_pred ccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhh
Q psy16310 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416 (1493)
Q Consensus 337 i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~ 416 (1493)
+++||+||||.-. -..+.+-.+++.+-.. .+..++|++|||+..+...
T Consensus 164 YsvIIlDEAHERs--l~TDiLlGlLKki~~~------------------------------R~~LklIimSATlda~kfS 211 (674)
T KOG0922|consen 164 YSVIILDEAHERS--LHTDILLGLLKKILKK------------------------------RPDLKLIIMSATLDAEKFS 211 (674)
T ss_pred ccEEEEechhhhh--hHHHHHHHHHHHHHhc------------------------------CCCceEEEEeeeecHHHHH
Confidence 9999999999641 1334455555554322 3446899999999643221
Q ss_pred hhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHH
Q psy16310 417 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496 (1493)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (1493)
+++.. ..++.+.+..... .++.. .......+.+.+
T Consensus 212 -------------------------~yF~~--a~i~~i~GR~fPV------ei~y~------------~~p~~dYv~a~~ 246 (674)
T KOG0922|consen 212 -------------------------EYFNN--APILTIPGRTFPV------EILYL------------KEPTADYVDAAL 246 (674)
T ss_pred -------------------------HHhcC--CceEeecCCCCce------eEEec------------cCCchhhHHHHH
Confidence 11110 0111111100000 00000 000000000000
Q ss_pred HhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhc----CC---
Q psy16310 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML----KC--- 569 (1493)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~----~~--- 569 (1493)
.. ++.-.+.+.+|.+|||...+++.+.+++.|... +-
T Consensus 247 ~t------------------------------------v~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~ 290 (674)
T KOG0922|consen 247 IT------------------------------------VIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCP 290 (674)
T ss_pred HH------------------------------------HHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCc
Confidence 00 011112345689999999999999999988655 11
Q ss_pred -CccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE--------ecC----------CCChHHHHH
Q psy16310 570 -SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------YHV----------PRTSEIYIH 630 (1493)
Q Consensus 570 -~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~--------yd~----------P~s~~~yiQ 630 (1493)
-+.++||.|+..+|.+++..-..|..+|+++|++++..|.||++.+||. |++ |-|-.+-.|
T Consensus 291 ~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~Q 370 (674)
T KOG0922|consen 291 ELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQ 370 (674)
T ss_pred ceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhh
Confidence 2467999999999999999999999999999999999999999999995 443 567788899
Q ss_pred HHhccccCCCCCeEEEEecCCcchh
Q psy16310 631 RSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 631 R~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
|.|||||.| +|.|+.+|+.++...
T Consensus 371 RaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 371 RAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred hcccCCCCC-CceEEEeeeHHHHhh
Confidence 999999988 999999999877633
No 206
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.5e-20 Score=235.13 Aligned_cols=114 Identities=25% Similarity=0.448 Sum_probs=99.8
Q ss_pred HhhCCCcEEEEecchhhHHHHHHHHHh--c--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcE
Q psy16310 540 ILQHPGRTLVFCNSISSVKRLTQLLTM--L--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615 (1493)
Q Consensus 540 l~~~~~~~IIF~~s~~~a~~L~~~L~~--~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~ 615 (1493)
+....|.+|||.+...+.+++++.|.. + ...++++||.|+..+|.++++.-..|+.+|++||++|+.+|.||+|.+
T Consensus 255 ~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 255 LREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred ccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEE
Confidence 344578999999999999999999987 3 477899999999999999999888898889999999999999999999
Q ss_pred EEE--------ecC----------CCChHHHHHHHhccccCCCCCeEEEEecCCcch
Q psy16310 616 VIH--------YHV----------PRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 616 VI~--------yd~----------P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
||. |++ |-|-.+..||.|||||.+ +|.||.+|+.++..
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 995 433 456678899999999987 99999999885544
No 207
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.85 E-value=2e-19 Score=193.35 Aligned_cols=310 Identities=17% Similarity=0.225 Sum_probs=199.7
Q ss_pred CChHHHHhhhhh---hhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 173 TPTKIQSMVMPS---ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 173 ~pt~iQ~~~i~~---~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
++++.|..+-.. .+...+++|++|-||+|||-.- .+.++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al---------------------------------- 141 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQAL---------------------------------- 141 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHH----------------------------------
Confidence 588999876543 3345789999999999999862 22333222
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
..|.++.+.+|....|..++..++... .+..+.+++|+.....+ ..++|||...|+..-+
T Consensus 142 -------~~G~~vciASPRvDVclEl~~Rlk~aF--~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~---- 201 (441)
T COG4098 142 -------NQGGRVCIASPRVDVCLELYPRLKQAF--SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ---- 201 (441)
T ss_pred -------hcCCeEEEecCcccchHHHHHHHHHhh--ccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh----
Confidence 356789999999999999999998764 35788899998765443 3899999988876543
Q ss_pred cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
.++++||||+|..- -.....+..-.+.-. ....-+|.+|||
T Consensus 202 ------aFD~liIDEVDAFP-~~~d~~L~~Av~~ar--------------------------------k~~g~~IylTAT 242 (441)
T COG4098 202 ------AFDLLIIDEVDAFP-FSDDQSLQYAVKKAR--------------------------------KKEGATIYLTAT 242 (441)
T ss_pred ------hccEEEEecccccc-ccCCHHHHHHHHHhh--------------------------------cccCceEEEecC
Confidence 46899999999652 222223333332221 233468999999
Q ss_pred cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCC
Q psy16310 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489 (1493)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1493)
.|..+..-+.... .....+...+...+......+++... ...+
T Consensus 243 p~k~l~r~~~~g~--------------------------~~~~klp~RfH~~pLpvPkf~w~~~~------~k~l----- 285 (441)
T COG4098 243 PTKKLERKILKGN--------------------------LRILKLPARFHGKPLPVPKFVWIGNW------NKKL----- 285 (441)
T ss_pred ChHHHHHHhhhCC--------------------------eeEeecchhhcCCCCCCCceEEeccH------HHHh-----
Confidence 9976654332100 00111111111000000000000000 0000
Q ss_pred cchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC---CCcEEEEecchhhHHHHHHHHHh
Q psy16310 490 RTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLTM 566 (1493)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~IIF~~s~~~a~~L~~~L~~ 566 (1493)
....-...|..++..+ +.+++||+++....+.++..|+.
T Consensus 286 --------------------------------------~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~ 327 (441)
T COG4098 286 --------------------------------------QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK 327 (441)
T ss_pred --------------------------------------hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHh
Confidence 0000011344444433 57999999999999999999943
Q ss_pred -c-CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC--CCChHHHHHHHhccccCCC--
Q psy16310 567 -L-KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV--PRTSEIYIHRSGRTARANN-- 640 (1493)
Q Consensus 567 -~-~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~--P~s~~~yiQR~GRagR~g~-- 640 (1493)
. ...++..|+. ...|.+.++.||+|++.+||+|.+++||+.+|+|+++|.-.- -.+-...+|.+||+||.-.
T Consensus 328 ~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~P 405 (441)
T COG4098 328 KLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERP 405 (441)
T ss_pred hCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCC
Confidence 3 3344667775 467888999999999999999999999999999998775322 2567889999999999543
Q ss_pred CCeEEEEecCCcc
Q psy16310 641 EGLTVVLIESDEI 653 (1493)
Q Consensus 641 ~G~~i~l~~~~e~ 653 (1493)
.|..+.|-.....
T Consensus 406 tGdv~FFH~G~sk 418 (441)
T COG4098 406 TGDVLFFHYGKSK 418 (441)
T ss_pred CCcEEEEeccchH
Confidence 3777666554433
No 208
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.84 E-value=3.8e-20 Score=237.82 Aligned_cols=329 Identities=20% Similarity=0.203 Sum_probs=209.1
Q ss_pred CcHHHHhhHHHhhc--cCC-cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 791 PTKIQSMVMPSALL--ARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 791 pt~iQ~~~i~~~l~--~~~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
+.+.|..++..++. ... .+++.||||+|||.+++++++..+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--------------------------------- 242 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--------------------------------- 242 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc---------------------------------
Confidence 37889998875543 234 789999999999999999988765331
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH-----h---------cCCCcEEEEC
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI-----L---------NKCPHILVAT 933 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~-----l---------~~~~~IlV~T 933 (1493)
.....+++++.|++.++.++++.++..+....+......|.......... . .....++++|
T Consensus 243 -----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~ 317 (733)
T COG1203 243 -----IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVT 317 (733)
T ss_pred -----ccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccC
Confidence 12456899999999999999999998765544333322332221111000 0 0012456666
Q ss_pred cHHHHHHHHhCcCccc-cccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhcc
Q psy16310 934 PGRLWEFIQLGHFHLT-ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012 (1493)
Q Consensus 934 P~rl~~~l~~~~~~~~-~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~ 1012 (1493)
|-........+..... ..-..+++||||+|.+.+......+..++..+. ..+..++++|||+|..+...+.....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~----~~g~~ill~SATlP~~~~~~l~~~~~ 393 (733)
T COG1203 318 PIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALA----EAGVPVLLMSATLPPFLKEKLKKALG 393 (733)
T ss_pred HhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHH----hCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 6555442211111110 001246899999998776644455555555553 34678999999999888776643322
Q ss_pred CcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc---hhhHHHHHHHhCCCcEEEEecchhh
Q psy16310 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE---KDSYLYYFILQHPGRTLVFCNSISS 1089 (1493)
Q Consensus 1013 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~~l~~~~~~~IVF~~s~~~ 1089 (1493)
.......... ......... +......+.... ............+++++|.|||+..
T Consensus 394 ~~~~~~~~~~-----------------~~~~~~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~ 452 (733)
T COG1203 394 KGREVVENAK-----------------FCPKEDEPG----LKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDR 452 (733)
T ss_pred cccceecccc-----------------ccccccccc----cccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHH
Confidence 1111110000 000000000 000000000000 0011111112346899999999999
Q ss_pred HHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHh----cCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1090 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR----DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1090 ~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~----~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
|..++..|+..+..+..+||.++..+|.+.++.++ .+...|+|||+|++.|+|+ +++++|- =+..+.+.+||+
T Consensus 453 Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mIT--e~aPidSLIQR~ 529 (733)
T COG1203 453 AIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLIT--ELAPIDSLIQRA 529 (733)
T ss_pred HHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeee--cCCCHHHHHHHH
Confidence 99999999998888999999999999988887644 5788999999999999999 6999884 345688999999
Q ss_pred hccCCCC--CCCeEEEEecCCC
Q psy16310 1166 GRTARAN--NEGLTLVLIESDE 1185 (1493)
Q Consensus 1166 GR~gR~g--~~G~~i~l~~~~e 1185 (1493)
||++|.| ..|..+++.....
T Consensus 530 GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 530 GRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred HHHhhcccccCCceeEeecccC
Confidence 9999999 5677777765443
No 209
>KOG0923|consensus
Probab=99.84 E-value=3.3e-20 Score=213.79 Aligned_cols=311 Identities=20% Similarity=0.225 Sum_probs=197.7
Q ss_pred ChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhh
Q psy16310 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 253 (1493)
Q Consensus 174 pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1493)
-+++-.+.+. ++..++-+||.|.||||||.. +-+.|+..
T Consensus 266 Vy~ykdell~-av~e~QVLiI~GeTGSGKTTQ----iPQyL~Ea------------------------------------ 304 (902)
T KOG0923|consen 266 VYPYKDELLK-AVKEHQVLIIVGETGSGKTTQ----IPQYLYEA------------------------------------ 304 (902)
T ss_pred chhhHHHHHH-HHHhCcEEEEEcCCCCCcccc----ccHHHHhc------------------------------------
Confidence 3455556664 777888999999999999997 33555431
Q ss_pred hcccCceEEEEEcccHHHHHHHHH-HHHHhcCCCCeEE--EEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcc
Q psy16310 254 KKTRNKLYALILAPTRELAIQVQN-HILDAGKYTPVKV--ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330 (1493)
Q Consensus 254 ~~~~~~~~aLiL~PTreLa~Qi~~-~~~~l~~~~~i~v--~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~ 330 (1493)
.-...+.++-+.-|.|--|.-+.. +..+++-.+|-.| .+.+.+..... .-|-++|.|+|+..+...+
T Consensus 305 Gytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSek--------TvlKYMTDGmLlREfL~ep-- 374 (902)
T KOG0923|consen 305 GYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSEK--------TVLKYMTDGMLLREFLSEP-- 374 (902)
T ss_pred ccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccCcc--------eeeeeecchhHHHHHhccc--
Confidence 112334557788899998888754 5556654444222 22333332222 3688999999998776443
Q ss_pred ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeecc
Q psy16310 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410 (1493)
Q Consensus 331 ~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl 410 (1493)
.|.+++++||||||.- .-..+.+-.++..+... .+...+++.|||+
T Consensus 375 --dLasYSViiiDEAHER--TL~TDILfgLvKDIar~------------------------------RpdLKllIsSAT~ 420 (902)
T KOG0923|consen 375 --DLASYSVIIVDEAHER--TLHTDILFGLVKDIARF------------------------------RPDLKLLISSATM 420 (902)
T ss_pred --cccceeEEEeehhhhh--hhhhhHHHHHHHHHHhh------------------------------CCcceEEeecccc
Confidence 3678999999999964 12334444454444221 3557899999999
Q ss_pred chhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCc
Q psy16310 411 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490 (1493)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1493)
...-... ++. ...+..+.+ .+.....++-......
T Consensus 421 DAekFS~-------------------------fFD--dapIF~iPG------------------RRyPVdi~Yt~~PEAd 455 (902)
T KOG0923|consen 421 DAEKFSA-------------------------FFD--DAPIFRIPG------------------RRYPVDIFYTKAPEAD 455 (902)
T ss_pred CHHHHHH-------------------------hcc--CCcEEeccC------------------cccceeeecccCCchh
Confidence 6432111 100 000000000 0000000000000001
Q ss_pred chhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhc---
Q psy16310 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML--- 567 (1493)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~--- 567 (1493)
.+...+..+..+. +.+..|.+|||....++.+...+.|...
T Consensus 456 YldAai~tVlqIH------------------------------------~tqp~GDILVFltGQeEIEt~~e~l~~~~~~ 499 (902)
T KOG0923|consen 456 YLDAAIVTVLQIH------------------------------------LTQPLGDILVFLTGQEEIETVKENLKERCRR 499 (902)
T ss_pred HHHHHHhhheeeE------------------------------------eccCCccEEEEeccHHHHHHHHHHHHHHHHH
Confidence 1111111111111 1223478999999999988777766433
Q ss_pred ------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE--------ecC----------CC
Q psy16310 568 ------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------YHV----------PR 623 (1493)
Q Consensus 568 ------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~--------yd~----------P~ 623 (1493)
.+-++++|+.+++..|.++++.-..|..+|++||++|+..|.|++|.+||. |++ |-
T Consensus 500 LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~pi 579 (902)
T KOG0923|consen 500 LGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPI 579 (902)
T ss_pred hccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeee
Confidence 345688999999999999999999999999999999999999999999995 332 44
Q ss_pred ChHHHHHHHhccccCCCCCeEEEEecCC
Q psy16310 624 TSEIYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 624 s~~~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
|-.+-.||+|||||.| +|.|+.||+.-
T Consensus 580 SKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 580 SKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred chhhhhhhccccCCCC-CCceEEeechh
Confidence 5667789999999999 99999999863
No 210
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=4.9e-20 Score=228.17 Aligned_cols=163 Identities=19% Similarity=0.251 Sum_probs=133.1
Q ss_pred chhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhc
Q psy16310 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML 567 (1493)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~ 567 (1493)
+.......+...+.-.+..+.....+........++.....|...+...+.. .+.++||||+|+..++.|+.+|...
T Consensus 542 TA~te~~Ef~~iY~L~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~ 621 (1025)
T PRK12900 542 TAETEASEFFEIYKLDVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK 621 (1025)
T ss_pred CChhHHHHHHHHhCCcEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 3344445566666665555555444444444445566666788888887743 3679999999999999999999999
Q ss_pred CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCC---CCcE-----EEEecCCCChHHHHHHHhccccCC
Q psy16310 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP---GIEH-----VIHYHVPRTSEIYIHRSGRTARAN 639 (1493)
Q Consensus 568 ~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip---~v~~-----VI~yd~P~s~~~yiQR~GRagR~g 639 (1493)
++....+|+ .+.+|...+..|+.+...|+|||++|+||+||+ +|.. ||+++.|.|...|.||+|||||.|
T Consensus 622 gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqG 699 (1025)
T PRK12900 622 RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQG 699 (1025)
T ss_pred CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCC
Confidence 999999997 688999999999999999999999999999999 6654 499999999999999999999999
Q ss_pred CCCeEEEEecCCcchh
Q psy16310 640 NEGLTVVLIESDEIPL 655 (1493)
Q Consensus 640 ~~G~~i~l~~~~e~~~ 655 (1493)
.+|.+++|++.+|.-+
T Consensus 700 dpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 700 DPGESVFYVSLEDELM 715 (1025)
T ss_pred CCcceEEEechhHHHH
Confidence 9999999998877544
No 211
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.82 E-value=2.4e-18 Score=226.24 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=88.8
Q ss_pred HHHHhCCCcEEEEecchhhHHHHHHHHHhcC--CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCcc-
Q psy16310 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE- 1147 (1493)
Q Consensus 1071 ~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~--~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~- 1147 (1493)
.++...++++||||+|....+.++..|.... .....+..+.. ..|..++++|+.++..||+||+.+++|||+|+..
T Consensus 668 ~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 668 EITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCce
Confidence 3344567899999999999999999997521 12223333333 5789999999999999999999999999999876
Q ss_pred -EEEEecCCC----C--------------------------hhHHHHHHhccCCCCCCCeEEEEecCC--CHHHHHHHHH
Q psy16310 1148 -HVIHYHVPR----T--------------------------SEIYIHRSGRTARANNEGLTLVLIESD--EIPLYIKMFN 1194 (1493)
Q Consensus 1148 -~VI~~d~p~----s--------------------------~~~yiqr~GR~gR~g~~G~~i~l~~~~--e~~~~~~~~~ 1194 (1493)
+||...+|- + ...+.|.+||.-|....--+++++++. ...+-+.+.+
T Consensus 747 ~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~ 826 (850)
T TIGR01407 747 VCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEK 826 (850)
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHH
Confidence 466666552 1 123578899999987654455555554 2234455555
Q ss_pred hcc
Q psy16310 1195 SLE 1197 (1493)
Q Consensus 1195 ~~~ 1197 (1493)
.+.
T Consensus 827 sLp 829 (850)
T TIGR01407 827 SLP 829 (850)
T ss_pred hCC
Confidence 553
No 212
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.82 E-value=1.1e-18 Score=218.72 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=114.0
Q ss_pred cchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhc
Q psy16310 1063 DEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139 (1493)
Q Consensus 1063 ~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~ 1139 (1493)
..+...++..+.. .+.++||||+|+..++.|+..|...|+.+..+||+|++.+|..++..|+.|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 3445555555543 3678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccEEEEec-----CCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHH
Q psy16310 1140 GLDIPGIEHVIHYH-----VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1140 GiDip~v~~VI~~d-----~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
|+|+|++++||++| .|.+..+|+||+|||||. ..|.++++++..+......+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 99999999999988 799999999999999998 68999999987765444433
No 213
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.7e-18 Score=214.73 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=112.5
Q ss_pred EEecccchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEee
Q psy16310 1058 ILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134 (1493)
Q Consensus 1058 ~~~~~~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaT 1134 (1493)
+.....+|...++..+.. .+.++||||+|+..++.|+..|...|++...+|+ .+.+|+..+..|+.+...|+|||
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 334445677777777743 4779999999999999999999999999999997 68899999999999999999999
Q ss_pred hhhhccccCC---Ccc-----EEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1135 DVAARGLDIP---GIE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1135 dv~~~GiDip---~v~-----~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
++++||+||+ +|. +||++..|.+...|.||+|||||.|.+|.+++|++..|.
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999999 554 459999999999999999999999999999999987664
No 214
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.81 E-value=5.2e-18 Score=218.17 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=105.8
Q ss_pred ccCchhhHHHHHHh---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC---CCeEEEEe
Q psy16310 528 KHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ---NNSILLAT 601 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~---~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g---~~~VLVaT 601 (1493)
..+.|..+|..+|. ..+.++|||+........|..+|...++.+..+||+++..+|..+++.|... ..-+|++|
T Consensus 468 e~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 468 ENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred hhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 34567666666554 3467999999999999999999999999999999999999999999999753 34679999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE--EEEecCC
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--VVLIESD 651 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~--i~l~~~~ 651 (1493)
.+++.|||+..+++||+||+|+|+..+.|++||+-|.|....+ |.|++.+
T Consensus 548 rAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 548 RAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred cccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999999977543 4445443
No 215
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.5e-17 Score=205.42 Aligned_cols=320 Identities=20% Similarity=0.244 Sum_probs=201.6
Q ss_pred CCCcHHHHhhHHHhhcc---CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 789 KTPTKIQSMVMPSALLA---RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~---~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
..+++-|..++..+... -...++.+.||||||.+|+-.|-..+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L---------------------------------- 242 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL---------------------------------- 242 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH----------------------------------
Confidence 35678899999755443 36789999999999999987666555
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHH----HHhcCCCcEEEECcHHHHHHH
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL----RILNKCPHILVATPGRLWEFI 941 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~----~~l~~~~~IlV~TP~rl~~~l 941 (1493)
..|.++|||+|-.+|-.|+.+.|+..+ +.++..++++.+..+.. +.......|+|||-..+
T Consensus 243 --------~~GkqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl---- 307 (730)
T COG1198 243 --------AQGKQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL---- 307 (730)
T ss_pred --------HcCCEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----
Confidence 234579999999999999999998865 48888899888765433 33345789999996554
Q ss_pred HhCcCccccccceeEEEecccchhccC---C---ChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcC
Q psy16310 942 QLGHFHLTELYKINYLVIDETDRMIES---G---HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015 (1493)
Q Consensus 942 ~~~~~~~~~l~~l~~lVlDEah~ll~~---~---~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~ 1015 (1493)
+..|.++++||+||-|--.-. + +..++....... .+.++++-|||++-+-.... ..+...
T Consensus 308 ------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~------~~~pvvLgSATPSLES~~~~--~~g~y~ 373 (730)
T COG1198 308 ------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK------ENAPVVLGSATPSLESYANA--ESGKYK 373 (730)
T ss_pred ------cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH------hCCCEEEecCCCCHHHHHhh--hcCceE
Confidence 245778999999999964211 1 234444444443 57899999999973221111 111000
Q ss_pred cccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHH---HhCCCcEEEEecchhhH--
Q psy16310 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSV-- 1090 (1493)
Q Consensus 1016 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~~~~~~IVF~~s~~~~-- 1090 (1493)
......... ......-.+++.......... .-...++..+ ...+.++|+|+|++.-+
T Consensus 374 ~~~L~~R~~-------~a~~p~v~iiDmr~e~~~~~~-----------~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~ 435 (730)
T COG1198 374 LLRLTNRAG-------RARLPRVEIIDMRKEPLETGR-----------SLSPALLEAIRKTLERGEQVLLFLNRRGYAPL 435 (730)
T ss_pred EEEcccccc-------ccCCCcceEEeccccccccCc-----------cCCHHHHHHHHHHHhcCCeEEEEEccCCccce
Confidence 000000000 000011111111111100000 0112233333 23356677777665433
Q ss_pred ----------------------------------------------------------HHHHHHHHhc--CCCccccccC
Q psy16310 1091 ----------------------------------------------------------KRLTQLLTML--KCSPLPLHAS 1110 (1493)
Q Consensus 1091 ----------------------------------------------------------~~l~~~L~~~--~~~~~~lhg~ 1110 (1493)
+++.+.|... +.++..+-++
T Consensus 436 l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~D 515 (730)
T COG1198 436 LLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSD 515 (730)
T ss_pred eecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccc
Confidence 3444444443 4455566666
Q ss_pred CCHHH--HHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC------------CChhHHHHHHhccCCCCCCCe
Q psy16310 1111 MNQRQ--RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP------------RTSEIYIHRSGRTARANNEGL 1176 (1493)
Q Consensus 1111 m~~~~--R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p------------~s~~~yiqr~GR~gR~g~~G~ 1176 (1493)
.+... -...+..|.+|+.+|||.|.+++.|.|+|+++.|...|.- +....+.|-+||+||++.+|.
T Consensus 516 tt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~ 595 (730)
T COG1198 516 TTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGE 595 (730)
T ss_pred cccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCe
Confidence 55433 3678999999999999999999999999999997765432 123457888999999999999
Q ss_pred EEEEecCCCHHHH
Q psy16310 1177 TLVLIESDEIPLY 1189 (1493)
Q Consensus 1177 ~i~l~~~~e~~~~ 1189 (1493)
+++-....+.+.+
T Consensus 596 VvIQT~~P~hp~i 608 (730)
T COG1198 596 VVIQTYNPDHPAI 608 (730)
T ss_pred EEEEeCCCCcHHH
Confidence 9887655444333
No 216
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.79 E-value=9.5e-18 Score=215.75 Aligned_cols=340 Identities=16% Similarity=0.147 Sum_probs=209.4
Q ss_pred CCcHHHHhhHHHhh---ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 790 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l---~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
.+.|+|..++..++ ..|.+.|++-..|.|||+..+. ++..+...
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~-------------------------------- 215 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEY-------------------------------- 215 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHh--------------------------------
Confidence 67899999997554 3567889999999999987543 33333211
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---HhcCCCcEEEECcHHHHHHHHh
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---ILNKCPHILVATPGRLWEFIQL 943 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l~~~~~IlV~TP~rl~~~l~~ 943 (1493)
......+|||||. .|..||.+.+.+++ ..+++..++|......... .....++|+|+|.+.+......
T Consensus 216 ------~~~~gp~LIVvP~-SlL~nW~~Ei~kw~--p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~ 286 (1033)
T PLN03142 216 ------RGITGPHMVVAPK-STLGNWMNEIRRFC--PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA 286 (1033)
T ss_pred ------cCCCCCEEEEeCh-HHHHHHHHHHHHHC--CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH
Confidence 0112348999997 66688999998875 2466677777543322211 1124579999999987654321
Q ss_pred CcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccc----
Q psy16310 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV---- 1019 (1493)
Q Consensus 944 ~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~---- 1019 (1493)
+. -...++||+||||++-.. ...+...+..+. ....+++|+|+-..-...++...........
T Consensus 287 ----L~-k~~W~~VIvDEAHrIKN~--~Sklskalr~L~------a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~ 353 (1033)
T PLN03142 287 ----LK-RFSWRYIIIDEAHRIKNE--NSLLSKTMRLFS------TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAE 353 (1033)
T ss_pred ----hc-cCCCCEEEEcCccccCCH--HHHHHHHHHHhh------cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHH
Confidence 11 114689999999997542 223445555552 2346899999864322211111110000000
Q ss_pred --------cC--C-CchhHHHHh------------Hh--ccCCCc--EEeccccc--------------------c----
Q psy16310 1020 --------SK--G-DPSIKRLQD------------LL--NIKSPK--IVDLTEKI--------------------G---- 1048 (1493)
Q Consensus 1020 --------~~--~-~~~~~~l~~------------~~--~~~~~~--~~~~~~~~--------------------~---- 1048 (1493)
.. . ...+..+.. .+ .+.... .+.+.... .
T Consensus 354 ~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~ 433 (1033)
T PLN03142 354 TFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKR 433 (1033)
T ss_pred HHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 00 0 000000000 00 000000 00000000 0
Q ss_pred ---ccccce----ee---------------EEEecccchhhHHHHHH---HhCCCcEEEEecchhhHHHHHHHHHhcCCC
Q psy16310 1049 ---ITKTLT----ES---------------KILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCS 1103 (1493)
Q Consensus 1049 ---~~~~~~----~~---------------~~~~~~~~k~~~l~~~l---~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~ 1103 (1493)
....+. +. ........|...+..++ ...+.++|||+......+.|...|...|+.
T Consensus 434 LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~ 513 (1033)
T PLN03142 434 LLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQ 513 (1033)
T ss_pred HHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCc
Confidence 000000 00 00011223333333333 334679999999999999999999999999
Q ss_pred ccccccCCCHHHHHHHHHHHhcC---CCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEE-
Q psy16310 1104 PLPLHASMNQRQRLKNLDRFRDQ---NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV- 1179 (1493)
Q Consensus 1104 ~~~lhg~m~~~~R~~~~~~F~~g---~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~- 1179 (1493)
...+||+++..+|..+++.|... ...+|++|.+++.|||+..+++||+||+|.++..+.|++||+-|.|....+.+
T Consensus 514 y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 514 YCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred EEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 99999999999999999999753 34578999999999999999999999999999999999999999998765544
Q ss_pred -EecCC
Q psy16310 1180 -LIESD 1184 (1493)
Q Consensus 1180 -l~~~~ 1184 (1493)
|++.+
T Consensus 594 RLIt~g 599 (1033)
T PLN03142 594 RFCTEY 599 (1033)
T ss_pred EEEeCC
Confidence 44444
No 217
>KOG0924|consensus
Probab=99.79 E-value=1.1e-18 Score=201.36 Aligned_cols=108 Identities=25% Similarity=0.397 Sum_probs=92.2
Q ss_pred CCCcEEEEecchhhHHHHHHHHHh----c------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCC
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTM----L------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~----~------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~ 612 (1493)
.+|.+|||...++..+..+..++. + ++.++++++.|++.-|.++++.-..|-.+|+|||++|+..|.||+
T Consensus 562 ~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~g 641 (1042)
T KOG0924|consen 562 PPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPG 641 (1042)
T ss_pred CCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecc
Confidence 357899999998887766655532 2 577889999999999999999999999999999999999999999
Q ss_pred CcEEEEec------------------CCCChHHHHHHHhccccCCCCCeEEEEecCC
Q psy16310 613 IEHVIHYH------------------VPRTSEIYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 613 v~~VI~yd------------------~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
+.+||..+ .|.|-..--||.|||||.| +|.||.+|+.+
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 99999643 2455666789999999998 99999999874
No 218
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.5e-17 Score=202.08 Aligned_cols=291 Identities=20% Similarity=0.233 Sum_probs=193.3
Q ss_pred HHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHH
Q psy16310 781 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 860 (1493)
Q Consensus 781 ~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1493)
+.+.+.....|+..|.-.... +..|++.-+.||||.|||.--++..+ .+
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR-~~rg~SFaiiAPTGvGKTTfg~~~sl-~~----------------------------- 121 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKR-LVRGKSFAIIAPTGVGKTTFGLLMSL-YL----------------------------- 121 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHH-HHcCCceEEEcCCCCchhHHHHHHHH-HH-----------------------------
Confidence 334444333999999998875 45789999999999999964322222 11
Q ss_pred HhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCC-cEEEE-EEcCCCHHHHH----HHhcCCCcEEEECc
Q psy16310 861 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVAC-VVGGMSTEKQL----RILNKCPHILVATP 934 (1493)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~-~~v~~-~~gg~~~~~~~----~~l~~~~~IlV~TP 934 (1493)
...+.+++||+||+.|+.|+++.+..++...+ ..+.. .++..+..+.. +......||+|+|.
T Consensus 122 ------------a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs 189 (1187)
T COG1110 122 ------------AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTS 189 (1187)
T ss_pred ------------HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeH
Confidence 13446899999999999999999999986655 44444 44554544322 23345789999998
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcc-------------------------------
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM------------------------------- 983 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~------------------------------- 983 (1493)
+-|...+.. +.. .+++++++|.+|.++..+. .+..++..+..
T Consensus 190 ~FL~k~~e~----L~~-~kFdfifVDDVDA~Lkask--NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~ 262 (1187)
T COG1110 190 QFLSKRFEE----LSK-LKFDFIFVDDVDAILKASK--NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREEL 262 (1187)
T ss_pred HHHHhhHHH----hcc-cCCCEEEEccHHHHHhccc--cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 777554432 111 2578999999998765431 11111111110
Q ss_pred --------cCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccccccccccee
Q psy16310 984 --------TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055 (1493)
Q Consensus 984 --------~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1055 (1493)
.......+++..|||..+.-.. ..-+...+++.. ........++..
T Consensus 263 ~~~e~~~~~~r~k~g~LvvsSATg~~rg~R--------------------~~LfReLlgFev------G~~~~~LRNIvD 316 (1187)
T COG1110 263 REVEREREKKRRKLGILVVSSATGKPRGSR--------------------LKLFRELLGFEV------GSGGEGLRNIVD 316 (1187)
T ss_pred HHHHHHHHHhccCCceEEEeeccCCCCCch--------------------HHHHHHHhCCcc------Cccchhhhheee
Confidence 0112446888999998643211 111112222221 111122333333
Q ss_pred eEEEecccchhhHHHHHHHhCCCcEEEEecc---hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEE
Q psy16310 1056 SKILCKHDEKDSYLYYFILQHPGRTLVFCNS---ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132 (1493)
Q Consensus 1056 ~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s---~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLV 1132 (1493)
.++.. .-...+..++...+.-.|||++. ++.++.+++.|+..|+++..+|+. ....++.|..|+++|||
T Consensus 317 ~y~~~---~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLV 388 (1187)
T COG1110 317 IYVES---ESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLV 388 (1187)
T ss_pred eeccC---ccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEE
Confidence 33333 33444566667777789999999 999999999999999999999984 26789999999999999
Q ss_pred ee----hhhhccccCCC-ccEEEEecCC
Q psy16310 1133 AT----DVAARGLDIPG-IEHVIHYHVP 1155 (1493)
Q Consensus 1133 aT----dv~~~GiDip~-v~~VI~~d~p 1155 (1493)
.. .++-||||+|. +.++|.|++|
T Consensus 389 GvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 389 GVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EecccccceeecCCchhheeEEEEecCC
Confidence 86 48999999997 7889999988
No 219
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.5e-17 Score=202.24 Aligned_cols=318 Identities=19% Similarity=0.249 Sum_probs=195.5
Q ss_pred HHHHHC-CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHH
Q psy16310 164 RALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 242 (1493)
Q Consensus 164 ~~l~~~-g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1493)
+.+.+. || +|...|.--.. -+..|+..-+.||||.|||.--++..+. +
T Consensus 73 ~fF~k~~G~-~~ws~QR~Wak-R~~rg~SFaiiAPTGvGKTTfg~~~sl~-~---------------------------- 121 (1187)
T COG1110 73 EFFKKATGF-RPWSAQRVWAK-RLVRGKSFAIIAPTGVGKTTFGLLMSLY-L---------------------------- 121 (1187)
T ss_pred HHHHHhhCC-CchHHHHHHHH-HHHcCCceEEEcCCCCchhHHHHHHHHH-H----------------------------
Confidence 334444 55 89999976655 5667899999999999999754333321 1
Q ss_pred HHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCC-eEEEE-EEcCCCHHHHHH----HhcCCCCEEEeC
Q psy16310 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVAC-VVGGMSTEKQLR----ILNKCPHILVAT 316 (1493)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~-i~v~~-~~G~~~~~~~~~----~l~~~~~IiV~T 316 (1493)
...+.++++|+||+.|+.|+++.+..++...+ ..+.. +++..+...... ...++.||+|+|
T Consensus 122 -------------a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitT 188 (1187)
T COG1110 122 -------------AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITT 188 (1187)
T ss_pred -------------HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEe
Confidence 12346899999999999999999999876544 33333 556655544322 224568999999
Q ss_pred cHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCC--------ccccccccCCcchhhhh
Q psy16310 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ--------PRQTMIESGHFPELKNI 388 (1493)
Q Consensus 317 P~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~--------~~~~~~~~~~~~~~~~~ 388 (1493)
.+-|...+.. +.. .+++++++|.+|.++..+ ..+..++..+......- -+..+.......+..+.
T Consensus 189 s~FL~k~~e~----L~~-~kFdfifVDDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~ 261 (1187)
T COG1110 189 SQFLSKRFEE----LSK-LKFDFIFVDDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREE 261 (1187)
T ss_pred HHHHHhhHHH----hcc-cCCCEEEEccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 9988655442 111 157999999999988765 33444444332211000 00000000000011111
Q ss_pred h---hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccc
Q psy16310 389 L---DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465 (1493)
Q Consensus 389 ~---~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1493)
. ............++++.|||..+.-.... -...+++..-..
T Consensus 262 ~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~--------------------LfReLlgFevG~--------------- 306 (1187)
T COG1110 262 LREVEREREKKRRKLGILVVSSATGKPRGSRLK--------------------LFRELLGFEVGS--------------- 306 (1187)
T ss_pred HHHHHHHHHHhccCCceEEEeeccCCCCCchHH--------------------HHHHHhCCccCc---------------
Confidence 0 00011123456789999999864321100 000111000000
Q ss_pred hhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCC
Q psy16310 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 545 (1493)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 545 (1493)
....+ .++.+.+... .-...+..++...+.
T Consensus 307 --------------------------~~~~L---------------------RNIvD~y~~~---~~~e~~~elvk~lG~ 336 (1187)
T COG1110 307 --------------------------GGEGL---------------------RNIVDIYVES---ESLEKVVELVKKLGD 336 (1187)
T ss_pred --------------------------cchhh---------------------hheeeeeccC---ccHHHHHHHHHHhCC
Confidence 00000 0111111111 223345566677778
Q ss_pred cEEEEecc---hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEec----hhhccCCCCC-CcEEE
Q psy16310 546 RTLVFCNS---ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD----VAARGLDIPG-IEHVI 617 (1493)
Q Consensus 546 ~~IIF~~s---~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTd----v~~rGlDip~-v~~VI 617 (1493)
.+|||++. ++.++.++++|...|+.+..+|+. ..+.++.|..|++++||... ++-||||+|+ +.++|
T Consensus 337 GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaI 411 (1187)
T COG1110 337 GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAV 411 (1187)
T ss_pred CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEE
Confidence 99999999 999999999999999999999984 37889999999999999875 7889999997 78999
Q ss_pred EecCC
Q psy16310 618 HYHVP 622 (1493)
Q Consensus 618 ~yd~P 622 (1493)
.|++|
T Consensus 412 F~GvP 416 (1187)
T COG1110 412 FYGVP 416 (1187)
T ss_pred EecCC
Confidence 98887
No 220
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.78 E-value=2.6e-17 Score=206.42 Aligned_cols=116 Identities=21% Similarity=0.295 Sum_probs=107.6
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec--
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH-- 620 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd-- 620 (1493)
.+.++||||+|+..++.|+.+|...|+.+..+||++++.+|..++..|+.|++.|||||+++++|+|+|++++||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 621 ---VPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 621 ---~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
.|.+..+|+||+|||||. ..|.++++++..+......+
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 899999999999999998 58999999987665554444
No 221
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.77 E-value=7e-18 Score=211.38 Aligned_cols=297 Identities=22% Similarity=0.252 Sum_probs=196.0
Q ss_pred HhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEE
Q psy16310 801 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880 (1493)
Q Consensus 801 ~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 880 (1493)
.++....-++++||||||||...-.-+++..+ ..+..+.
T Consensus 60 ~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----------------------------------------~~~g~I~ 98 (845)
T COG1643 60 KAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----------------------------------------GIAGKIG 98 (845)
T ss_pred HHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----------------------------------------ccCCeEE
Confidence 46777788999999999999863333332211 2234577
Q ss_pred EEcccHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEe
Q psy16310 881 ILAPTRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 959 (1493)
Q Consensus 881 il~PTreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVl 959 (1493)
+.=|.|-=|.-+++.+.. ++...|-.|+.-+...+. ......|-++|.|.|+..+.... .|+.+++|||
T Consensus 99 ~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~------~s~~Trik~mTdGiLlrei~~D~----~Ls~ys~vIi 168 (845)
T COG1643 99 CTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESK------VSPRTRIKVMTDGILLREIQNDP----LLSGYSVVII 168 (845)
T ss_pred ecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeecc------CCCCceeEEeccHHHHHHHhhCc----ccccCCEEEE
Confidence 777988766777666544 444445555554432211 12345799999999999988654 3778999999
Q ss_pred cccchh-ccCCC-hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCC
Q psy16310 960 DETDRM-IESGH-FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037 (1493)
Q Consensus 960 DEah~l-l~~~~-~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1037 (1493)
||||.= ++..+ ...+..++... +++..++++|||+...-... . +.+
T Consensus 169 DEaHERSl~tDilLgllk~~~~~r-----r~DLKiIimSATld~~rfs~---~------------------------f~~ 216 (845)
T COG1643 169 DEAHERSLNTDILLGLLKDLLARR-----RDDLKLIIMSATLDAERFSA---Y------------------------FGN 216 (845)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhc-----CCCceEEEEecccCHHHHHH---H------------------------cCC
Confidence 999962 12111 11122223222 34588999999997432211 1 111
Q ss_pred CcEEeccccccccccceeeEEE-ecccc-hhhHHHHH----HHhCCCcEEEEecchhhHHHHHHHHHh--c--CCCcccc
Q psy16310 1038 PKIVDLTEKIGITKTLTESKIL-CKHDE-KDSYLYYF----ILQHPGRTLVFCNSISSVKRLTQLLTM--L--KCSPLPL 1107 (1493)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-k~~~l~~~----l~~~~~~~IVF~~s~~~~~~l~~~L~~--~--~~~~~~l 1107 (1493)
..++.+..... .+.-.|.. ...+. -...+... +....|.+|||.+.....+.+++.|.. + ...+.++
T Consensus 217 apvi~i~GR~f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PL 293 (845)
T COG1643 217 APVIEIEGRTY---PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPL 293 (845)
T ss_pred CCEEEecCCcc---ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeec
Confidence 22222221111 11111111 11111 12222222 233478999999999999999999987 3 4678899
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEe--------cC----------CCChhHHHHHHhccC
Q psy16310 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY--------HV----------PRTSEIYIHRSGRTA 1169 (1493)
Q Consensus 1108 hg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~--------d~----------p~s~~~yiqr~GR~g 1169 (1493)
||.|+..++.++++--..|..+|++||++++.+|.||+|.+||.- ++ |.|-.+.-||.||||
T Consensus 294 y~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAG 373 (845)
T COG1643 294 YGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAG 373 (845)
T ss_pred cccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccc
Confidence 999999999998888777877899999999999999999999963 32 456788999999999
Q ss_pred CCCCCCeEEEEecCC
Q psy16310 1170 RANNEGLTLVLIESD 1184 (1493)
Q Consensus 1170 R~g~~G~~i~l~~~~ 1184 (1493)
|-+ +|.||-+++..
T Consensus 374 R~~-pGicyRLyse~ 387 (845)
T COG1643 374 RTG-PGICYRLYSEE 387 (845)
T ss_pred cCC-CceEEEecCHH
Confidence 986 89999999763
No 222
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.77 E-value=6.1e-17 Score=213.11 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=82.5
Q ss_pred HHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcC--CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCC
Q psy16310 535 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612 (1493)
Q Consensus 535 ~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~--~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~ 612 (1493)
.+..++...++++|||++|+...+.++..|.... .....+..+.. ..|..+++.|+.|+..||+||+.+.+|||+|+
T Consensus 665 ~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g 743 (850)
T TIGR01407 665 YIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPG 743 (850)
T ss_pred HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCC
Confidence 3444455567899999999999999999987521 12223333333 57888999999999999999999999999999
Q ss_pred Cc--EEEEecCC----CC--------------------------hHHHHHHHhccccCCCCCeEEEEecC
Q psy16310 613 IE--HVIHYHVP----RT--------------------------SEIYIHRSGRTARANNEGLTVVLIES 650 (1493)
Q Consensus 613 v~--~VI~yd~P----~s--------------------------~~~yiQR~GRagR~g~~G~~i~l~~~ 650 (1493)
.. .||...+| .+ ...+.|.+||.=|.....-++++++.
T Consensus 744 ~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 744 NGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred CceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 77 45666655 21 23346999999998755334444444
No 223
>KOG0949|consensus
Probab=99.76 E-value=1.7e-17 Score=198.96 Aligned_cols=164 Identities=19% Similarity=0.221 Sum_probs=113.6
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|..||.+.+. .+-.+..++++|||.+|||++--- ++..+++.
T Consensus 511 ~Pd~WQ~elLD-svDr~eSavIVAPTSaGKTfisfY-~iEKVLRe----------------------------------- 553 (1330)
T KOG0949|consen 511 CPDEWQRELLD-SVDRNESAVIVAPTSAGKTFISFY-AIEKVLRE----------------------------------- 553 (1330)
T ss_pred CCcHHHHHHhh-hhhcccceEEEeeccCCceeccHH-HHHHHHhh-----------------------------------
Confidence 58899999997 777788999999999999997332 22333321
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcC-CCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~-~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~ 331 (1493)
....-+|+++||++|+.|+......... .+-.+...+.|......+.. .-+|+|+|+-|+.|-.+|.......
T Consensus 554 ----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q 627 (1330)
T KOG0949|consen 554 ----SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQ 627 (1330)
T ss_pred ----cCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhh
Confidence 2234599999999999999777655542 22233444555554444332 2358999999999988887654455
Q ss_pred cccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccc
Q psy16310 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411 (1493)
Q Consensus 332 ~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~ 411 (1493)
.+..+++++|+||+|.+....-.-.+++++..+ ++.++++|||+.
T Consensus 628 ~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-----------------------------------~CP~L~LSATig 672 (1330)
T KOG0949|consen 628 KFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-----------------------------------PCPFLVLSATIG 672 (1330)
T ss_pred hhhhcceEEEechhhhccccccchHHHHHHHhc-----------------------------------CCCeeEEecccC
Confidence 567799999999999875443333344444322 368999999997
Q ss_pred hhh
Q psy16310 412 HSL 414 (1493)
Q Consensus 412 ~~~ 414 (1493)
+..
T Consensus 673 N~~ 675 (1330)
T KOG0949|consen 673 NPN 675 (1330)
T ss_pred CHH
Confidence 643
No 224
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.75 E-value=4.3e-17 Score=207.61 Aligned_cols=322 Identities=15% Similarity=0.090 Sum_probs=179.2
Q ss_pred CCcHHHHhhHHHhhcc---------CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHH
Q psy16310 790 TPTKIQSMVMPSALLA---------RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 860 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~---------~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1493)
.|+++|..|+..++.. .+..+++.+||||||++++..+.. ++.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~-l~~--------------------------- 289 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARK-ALE--------------------------- 289 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHH-HHh---------------------------
Confidence 3788999998755421 357899999999999986655432 221
Q ss_pred HhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc-CCCcEEEECcHHHHH
Q psy16310 861 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPGRLWE 939 (1493)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP~rl~~ 939 (1493)
....+++|||+|+++|..|+.+.|..++... ..+..+...-...+. ....|+|+|.+.|..
T Consensus 290 ------------~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~ 351 (667)
T TIGR00348 290 ------------LLKNPKVFFVVDRRELDYQLMKEFQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDK 351 (667)
T ss_pred ------------hcCCCeEEEEECcHHHHHHHHHHHHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhh
Confidence 1234679999999999999999999876321 111112222223333 235899999999976
Q ss_pred HHHhCcCccccccceeEEEecccchhccCCChhHHHHHH-HHhcccCCCCCceEEEEecccccchHhHHhhhccCcCccc
Q psy16310 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018 (1493)
Q Consensus 940 ~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il-~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~ 1018 (1493)
.+.........-..--+||+||||+.... .+...+ ..+ ++...++||||+-...........+......
T Consensus 352 ~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~~~~l~~~~------p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~ 421 (667)
T TIGR00348 352 KLKEEEEKFPVDRKEVVVIFDEAHRSQYG----ELAKNLKKAL------KNASFFGFTGTPIFKKDRDTSLTFAYVFGRY 421 (667)
T ss_pred hHhhhhhccCCCCCCEEEEEEcCccccch----HHHHHHHhhC------CCCcEEEEeCCCcccccccccccccCCCCCe
Confidence 44321111110001128999999985432 333333 333 4578999999996321100000000000000
Q ss_pred ccCCCchhHHHHhHhccCCCcEEeccc------cccccccceeeE-----------------------EEecccchhhHH
Q psy16310 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTE------KIGITKTLTESK-----------------------ILCKHDEKDSYL 1069 (1493)
Q Consensus 1019 ~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----------------------~~~~~~~k~~~l 1069 (1493)
+.. -.+......- .-.+....... .......+.... ...........+
T Consensus 422 i~~--Y~~~~AI~dG-~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 498 (667)
T TIGR00348 422 LHR--YFITDAIRDG-LTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESI 498 (667)
T ss_pred EEE--eeHHHHhhcC-CeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHH
Confidence 000 0000000000 00000000000 000000000000 000011111111
Q ss_pred HHHHH--------hCCCcEEEEecchhhHHHHHHHHHhcC-----CCccccccCCCHH---------------------H
Q psy16310 1070 YYFIL--------QHPGRTLVFCNSISSVKRLTQLLTMLK-----CSPLPLHASMNQR---------------------Q 1115 (1493)
Q Consensus 1070 ~~~l~--------~~~~~~IVF~~s~~~~~~l~~~L~~~~-----~~~~~lhg~m~~~---------------------~ 1115 (1493)
...+. ..+++++|||.++.+|..++..|.... .....+++..... .
T Consensus 499 a~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (667)
T TIGR00348 499 AKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEI 578 (667)
T ss_pred HHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhH
Confidence 11111 124899999999999999999986652 3344455543222 2
Q ss_pred HHHHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCC
Q psy16310 1116 RLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171 (1493)
Q Consensus 1116 R~~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 1171 (1493)
...++++|+. +..+|||.+|.+..|+|.|.+++++...+..+ ..++|.+||+.|.
T Consensus 579 ~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 579 YYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred HHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 2478889986 68899999999999999999999998776665 4589999999994
No 225
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.75 E-value=5e-17 Score=209.19 Aligned_cols=333 Identities=20% Similarity=0.223 Sum_probs=203.4
Q ss_pred ChHHHHhhhhhhhcc--CC-cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 174 PTKIQSMVMPSALLA--RK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 174 pt~iQ~~~i~~~l~~--~~-dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
+++.|..++..++.. .. .+++.||||+|||.+.+++++..+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--------------------------------- 242 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--------------------------------- 242 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc---------------------------------
Confidence 488999988755432 34 788999999999999999988665321
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH-----h---------cCCCCEEEeC
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI-----L---------NKCPHILVAT 316 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~-----l---------~~~~~IiV~T 316 (1493)
.....+++++.|++.++.++++.+.......++......|.......... . .....++++|
T Consensus 243 -----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~ 317 (733)
T COG1203 243 -----IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVT 317 (733)
T ss_pred -----ccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccC
Confidence 12456899999999999999999998765544333322333221111000 0 0012455666
Q ss_pred cHHHHHHHHcCCcccccc--ccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccc
Q psy16310 317 PGRLWEFIQLGHFHLTEL--YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394 (1493)
Q Consensus 317 P~~L~~~l~~~~~~~~~l--~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1493)
|-.........+ .+..+ -..+++||||+|.+-+..-...+..++..+..
T Consensus 318 ~~~~~~~~~~~~-~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~---------------------------- 368 (733)
T COG1203 318 PIQILIFSVKGF-KFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAE---------------------------- 368 (733)
T ss_pred HhHhhhhhcccc-chHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHh----------------------------
Confidence 655544222111 11101 13578999999977544344445555544432
Q ss_pred cCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccC
Q psy16310 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 474 (1493)
Q Consensus 395 ~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1493)
....+|++|||+|+.+...+............... .+...
T Consensus 369 ----~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~------------------------------------~~~~~ 408 (733)
T COG1203 369 ----AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK------------------------------------FCPKE 408 (733)
T ss_pred ----CCCCEEEEecCCCHHHHHHHHHHHhcccceecccc------------------------------------ccccc
Confidence 23579999999998877665432211110000000 00000
Q ss_pred CcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecch
Q psy16310 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554 (1493)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~ 554 (1493)
.... +........ ... +. .-...+...-...+.+++|-|||.
T Consensus 409 ~e~~-----~~~~~~~~~-------~~~--~~------------------------~~~~~~~~~~~~~~~kvlvI~NTV 450 (733)
T COG1203 409 DEPG-----LKRKERVDV-------EDG--PQ------------------------EELIELISEEVKEGKKVLVIVNTV 450 (733)
T ss_pred cccc-----cccccchhh-------hhh--hh------------------------HhhhhcchhhhccCCcEEEEEecH
Confidence 0000 000000000 000 00 000000000112357999999999
Q ss_pred hhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHH----hcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 555 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF----RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 555 ~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~F----r~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
..|.+++..|+..+..++.+||.++..+|.+.++.+ ..+...|+|||.|.+-|+|+ +++++|-= +..+.+.+|
T Consensus 451 ~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe--~aPidSLIQ 527 (733)
T COG1203 451 DRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITE--LAPIDSLIQ 527 (733)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeeec--CCCHHHHHH
Confidence 999999999999888899999999999998777754 45788999999999999999 58877654 444889999
Q ss_pred HHhccccCC--CCCeEEEEecCCcch
Q psy16310 631 RSGRTARAN--NEGLTVVLIESDEIP 654 (1493)
Q Consensus 631 R~GRagR~g--~~G~~i~l~~~~e~~ 654 (1493)
|+||++|.| ..|..+++......+
T Consensus 528 R~GRv~R~g~~~~~~~~v~~~~~~~~ 553 (733)
T COG1203 528 RAGRVNRHGKKENGKIYVYNDEERGP 553 (733)
T ss_pred HHHHHhhcccccCCceeEeecccCCC
Confidence 999999999 567777666554433
No 226
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.74 E-value=3.1e-16 Score=202.80 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=85.5
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCC--ccEEEEe
Q psy16310 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG--IEHVIHY 1152 (1493)
Q Consensus 1075 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~--v~~VI~~ 1152 (1493)
..+|+++|+++|.+..+.++..|......+ ...|.-. .|..++++|+.++..||++|+.+.+|+|+|+ ...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 568999999999999999999997654444 3334221 2566899999999999999999999999973 4556665
Q ss_pred cCC----CC--------------------------hhHHHHHHhccCCCCC-CCeEEEEecCC--CHHHHHHHHHhccc
Q psy16310 1153 HVP----RT--------------------------SEIYIHRSGRTARANN-EGLTLVLIESD--EIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1153 d~p----~s--------------------------~~~yiqr~GR~gR~g~-~G~~i~l~~~~--e~~~~~~~~~~~~~ 1198 (1493)
.+| .+ ...+.|-+||.-|... .| +++++++. ...+-+.+.+.+..
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G-vv~ilD~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS-AVLILDRRILTKSYGKQILASLAE 799 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE-EEEEECCcccccHHHHHHHHhCCC
Confidence 555 22 1235799999999865 45 45555544 23455677777654
No 227
>KOG0922|consensus
Probab=99.73 E-value=1.3e-16 Score=187.72 Aligned_cols=299 Identities=20% Similarity=0.233 Sum_probs=194.1
Q ss_pred hhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEE
Q psy16310 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881 (1493)
Q Consensus 802 ~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 881 (1493)
.+..++-+|+.|+||||||.- +| +.++... ......+.+
T Consensus 62 ~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG-------------------------------------~~~~g~I~~ 100 (674)
T KOG0922|consen 62 AVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAG-------------------------------------FASSGKIAC 100 (674)
T ss_pred HHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcc-------------------------------------cccCCcEEe
Confidence 556778899999999999974 44 2222211 112223777
Q ss_pred EcccHHHHHHHHHHHH-HhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEec
Q psy16310 882 LAPTRELAIQVQNHIL-DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960 (1493)
Q Consensus 882 l~PTreLa~Q~~~~~~-~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlD 960 (1493)
--|.|--|.-+++... +++...|-.|+.-+.-.+. ......|.+.|-|.|+..+.... .|.+.++||+|
T Consensus 101 TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~------ts~~TrikymTDG~LLRE~l~Dp----~LskYsvIIlD 170 (674)
T KOG0922|consen 101 TQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDS------TSKDTRIKYMTDGMLLREILKDP----LLSKYSVIILD 170 (674)
T ss_pred ecCchHHHHHHHHHHHHHhCCCcCceeeeEEEeccc------CCCceeEEEecchHHHHHHhcCC----ccccccEEEEe
Confidence 7799887777766543 3554556555554432111 11234799999999988775433 47789999999
Q ss_pred ccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcE
Q psy16310 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 1040 (1493)
Q Consensus 961 Eah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1040 (1493)
|||.=. -+-+-+..+++.+... .+...++++|||+.-...... +....+
T Consensus 171 EAHERs--l~TDiLlGlLKki~~~--R~~LklIimSATlda~kfS~y---------------------------F~~a~i 219 (674)
T KOG0922|consen 171 EAHERS--LHTDILLGLLKKILKK--RPDLKLIIMSATLDAEKFSEY---------------------------FNNAPI 219 (674)
T ss_pred chhhhh--hHHHHHHHHHHHHHhc--CCCceEEEEeeeecHHHHHHH---------------------------hcCCce
Confidence 999611 1123344444444322 355789999999963322111 111222
Q ss_pred EeccccccccccceeeEEEecccchh-hHHHHH----HHhCCCcEEEEecchhhHHHHHHHHHhc----CC----Ccccc
Q psy16310 1041 VDLTEKIGITKTLTESKILCKHDEKD-SYLYYF----ILQHPGRTLVFCNSISSVKRLTQLLTML----KC----SPLPL 1107 (1493)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l~~~----l~~~~~~~IVF~~s~~~~~~l~~~L~~~----~~----~~~~l 1107 (1493)
+.+..... .+...+...+..+-. ..+... +...+|-+|||....+..+.+++.|.+. +- -+.++
T Consensus 220 ~~i~GR~f---PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lpl 296 (674)
T KOG0922|consen 220 LTIPGRTF---PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPL 296 (674)
T ss_pred EeecCCCC---ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeee
Confidence 22222111 111111111111111 111111 1234788999999999999999998765 11 24679
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE--------ecC----------CCChhHHHHHHhccC
Q psy16310 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------YHV----------PRTSEIYIHRSGRTA 1169 (1493)
Q Consensus 1108 hg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~--------~d~----------p~s~~~yiqr~GR~g 1169 (1493)
||.|+.+++.++++.-..|..+|++||++++..+-||++.+||. |++ |-|..+-.||.||||
T Consensus 297 y~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAG 376 (674)
T KOG0922|consen 297 YGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAG 376 (674)
T ss_pred cccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCC
Confidence 99999999999998888899999999999999999999999996 333 567788899999999
Q ss_pred CCCCCCeEEEEecCCCH
Q psy16310 1170 RANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1170 R~g~~G~~i~l~~~~e~ 1186 (1493)
|.| +|.|+-+++..+.
T Consensus 377 Rt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 377 RTG-PGKCYRLYTESAY 392 (674)
T ss_pred CCC-CceEEEeeeHHHH
Confidence 986 8999999987654
No 228
>KOG0920|consensus
Probab=99.73 E-value=2.1e-16 Score=196.80 Aligned_cols=342 Identities=21% Similarity=0.243 Sum_probs=202.6
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhh
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1493)
+..+.+.+ .++..++.++|++.||+|||...---++......
T Consensus 175 ~~~r~~Il-~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~------------------------------------- 216 (924)
T KOG0920|consen 175 YKMRDTIL-DAIEENQVVVISGETGCGKTTQVPQFILDEAIES------------------------------------- 216 (924)
T ss_pred HHHHHHHH-HHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc-------------------------------------
Confidence 44455555 4888889999999999999997433344433221
Q ss_pred cccCceEEEEEcccHHHHHHHHHHH-HHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccc
Q psy16310 255 KTRNKLYALILAPTRELAIQVQNHI-LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333 (1493)
Q Consensus 255 ~~~~~~~aLiL~PTreLa~Qi~~~~-~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~ 333 (1493)
.....+++--|.|--|.-+++.. .+.+...|-.|+.-.+..+... ....+++||.|.|++.|..+. .
T Consensus 217 --~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~~~----~ 284 (924)
T KOG0920|consen 217 --GAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQSDP----T 284 (924)
T ss_pred --CCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecccC------CceeEEEecHHHHHHHhccCc----c
Confidence 12345888889988877776654 3444444433333333222111 124799999999999998632 3
Q ss_pred cccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchh
Q psy16310 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 413 (1493)
Q Consensus 334 l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~ 413 (1493)
+..+.+||+||+|.-.- ..+-+..+++.+-.. .+..++|+||||+..+
T Consensus 285 l~~vthiivDEVHER~i--~~DflLi~lk~lL~~------------------------------~p~LkvILMSAT~dae 332 (924)
T KOG0920|consen 285 LSGVTHIIVDEVHERSI--NTDFLLILLKDLLPR------------------------------NPDLKVILMSATLDAE 332 (924)
T ss_pred cccCceeeeeeEEEccC--CcccHHHHHHHHhhh------------------------------CCCceEEEeeeecchH
Confidence 66899999999997522 222233333333111 3567999999999754
Q ss_pred hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchh
Q psy16310 414 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493 (1493)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1493)
....+.. ....+.+.+. +... ...|+-..+....
T Consensus 333 ~fs~YF~---------------------------~~pvi~i~gr---tfpV-----------~~~fLEDil~~~~----- 366 (924)
T KOG0920|consen 333 LFSDYFG---------------------------GCPVITIPGR---TFPV-----------KEYFLEDILSKTG----- 366 (924)
T ss_pred HHHHHhC---------------------------CCceEeecCC---Ccch-----------HHHHHHHHHHHhc-----
Confidence 4332210 0000000000 0000 0000000000000
Q ss_pred hHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH---h--hCCCcEEEEecchhhHHHHHHHHHhc-
Q psy16310 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---L--QHPGRTLVFCNSISSVKRLTQLLTML- 567 (1493)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~--~~~~~~IIF~~s~~~a~~L~~~L~~~- 567 (1493)
.......+....-...... .. ......+....++..++ . ..+|.+|||.++..+...+...|...
T Consensus 367 ----~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~ 437 (924)
T KOG0920|consen 367 ----YVSEDDSARSGPERSQLRL-AR----LKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNL 437 (924)
T ss_pred ----ccccccccccccccCcccc-cc----chhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcc
Confidence 0000000000000000000 00 00000011112222222 1 23689999999999999999999642
Q ss_pred ------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE--------ecCCCChHH------
Q psy16310 568 ------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------YHVPRTSEI------ 627 (1493)
Q Consensus 568 ------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~--------yd~P~s~~~------ 627 (1493)
.+-+.++|+.|+..++..++..-..|..+|++||++|+.+|.|++|-+||. ||+-.+...
T Consensus 438 ~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wv 517 (924)
T KOG0920|consen 438 PFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWV 517 (924)
T ss_pred ccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeec
Confidence 245678999999999999999999999999999999999999999999994 776655443
Q ss_pred ----HHHHHhccccCCCCCeEEEEecCCcch
Q psy16310 628 ----YIHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 628 ----yiQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
-.||.|||||.- +|.||.+|+.....
T Consensus 518 SkAna~QR~GRAGRv~-~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 518 SKANAKQRRGRAGRVR-PGICYHLYTRSRYE 547 (924)
T ss_pred cccchHHhcccccCcc-CCeeEEeechhhhh
Confidence 369999999975 99999999886544
No 229
>KOG0949|consensus
Probab=99.72 E-value=2.6e-16 Score=188.84 Aligned_cols=163 Identities=19% Similarity=0.218 Sum_probs=116.6
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.|-.||.+.+. .+..+..++++|||.+|||.+.-- .++.++..
T Consensus 511 ~Pd~WQ~elLD-svDr~eSavIVAPTSaGKTfisfY-~iEKVLRe----------------------------------- 553 (1330)
T KOG0949|consen 511 CPDEWQRELLD-SVDRNESAVIVAPTSAGKTFISFY-AIEKVLRE----------------------------------- 553 (1330)
T ss_pred CCcHHHHHHhh-hhhcccceEEEeeccCCceeccHH-HHHHHHhh-----------------------------------
Confidence 57889999996 677889999999999999987433 34444432
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhh-CCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAG-KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~-~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~ 948 (1493)
....-+|+++||.+|+.|+...+.... ...-.+...+.|....+.+.. .-+|+|+|+-|+-+-.+|-......
T Consensus 554 ----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q 627 (1330)
T KOG0949|consen 554 ----SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQ 627 (1330)
T ss_pred ----cCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhh
Confidence 223469999999999999998887765 223344445556555444433 2257999999999988886543344
Q ss_pred ccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 949 ~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
....+++++|+||+|.+....-.--.+.++-. .+..++++|||+.+.
T Consensus 628 ~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l-------i~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 628 KFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL-------IPCPFLVLSATIGNP 674 (1330)
T ss_pred hhhhcceEEEechhhhccccccchHHHHHHHh-------cCCCeeEEecccCCH
Confidence 55778999999999998655433344444443 357899999999864
No 230
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.72 E-value=1.2e-16 Score=192.24 Aligned_cols=315 Identities=19% Similarity=0.223 Sum_probs=188.5
Q ss_pred CCCcHHHHhhHHHhh---c-cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 789 KTPTKIQSMVMPSAL---L-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l---~-~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
..|+.+|..||.... . +.+.+++++.||+|||..+ +.++.+|+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~------------------------------ 212 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS------------------------------ 212 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc------------------------------
Confidence 468999999997443 2 3346999999999999885 4566666542
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~ 944 (1493)
....++|+|+-++.|+.|.+..+..+. ..+-.+..+.+-... ..++|.|+|-.++...+...
T Consensus 213 ---------~~~KRVLFLaDR~~Lv~QA~~af~~~~-P~~~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~ 274 (875)
T COG4096 213 ---------GWVKRVLFLADRNALVDQAYGAFEDFL-PFGTKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQK 274 (875)
T ss_pred ---------chhheeeEEechHHHHHHHHHHHHHhC-CCccceeeeecccCC--------cceeEEEeehHHHHhhhhcc
Confidence 334579999999999999999988875 333333333331111 13589999999998877654
Q ss_pred cCcccccc--ceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhc-cCcCcccccC
Q psy16310 945 HFHLTELY--KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK-GQSKSKKVSK 1021 (1493)
Q Consensus 945 ~~~~~~l~--~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~-~~~~~~~~~~ 1021 (1493)
......+. .+++||+||||+ |.+.....|+.++- .-+++++||+.......-.... +.+.. ..
T Consensus 275 ~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~dYFd-------A~~~gLTATP~~~~d~~T~~~F~g~Pt~-~Y-- 340 (875)
T COG4096 275 EDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSILDYFD-------AATQGLTATPKETIDRSTYGFFNGEPTY-AY-- 340 (875)
T ss_pred ccccccCCCCceeEEEechhhh----hHHhhhHHHHHHHH-------HHHHhhccCcccccccccccccCCCcce-ee--
Confidence 22222333 489999999999 44455567777763 1233448888753322111111 10000 00
Q ss_pred CCchhHHHHhHhccCCCcEEeccccc-------------------cc--------cccceeeEEEecccc-hhhHHHHHH
Q psy16310 1022 GDPSIKRLQDLLNIKSPKIVDLTEKI-------------------GI--------TKTLTESKILCKHDE-KDSYLYYFI 1073 (1493)
Q Consensus 1022 ~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~--------~~~~~~~~~~~~~~~-k~~~l~~~l 1073 (1493)
+++.-..--.+-++..+.+.... .+ ...+....+.....+ -...+...+
T Consensus 341 ---sleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l 417 (875)
T COG4096 341 ---SLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYL 417 (875)
T ss_pred ---cHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHh
Confidence 00000000001111111110000 00 000000000000011 111222222
Q ss_pred Hh-----CCCcEEEEecchhhHHHHHHHHHhcC-----CCccccccCCCHHHHHHHHHHHhc--CCCCeEEeehhhhccc
Q psy16310 1074 LQ-----HPGRTLVFCNSISSVKRLTQLLTMLK-----CSPLPLHASMNQRQRLKNLDRFRD--QNNSILLATDVAARGL 1141 (1493)
Q Consensus 1074 ~~-----~~~~~IVF~~s~~~~~~l~~~L~~~~-----~~~~~lhg~m~~~~R~~~~~~F~~--g~~~VLVaTdv~~~Gi 1141 (1493)
.. ..++|||||.+..+|+.+...|.... --+..+.|+-.+.+ ..++.|.. .--+|.|+.+++..|+
T Consensus 418 ~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGi 495 (875)
T COG4096 418 KRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGV 495 (875)
T ss_pred ccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCC
Confidence 22 14699999999999999999998753 22444566644443 34555654 3347889999999999
Q ss_pred cCCCccEEEEecCCCChhHHHHHHhccCCC
Q psy16310 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171 (1493)
Q Consensus 1142 Dip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 1171 (1493)
|+|.|.++|.+..-.|..-|.|++||+-|.
T Consensus 496 Dvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 496 DVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred CchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 999999999999999999999999999995
No 231
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.72 E-value=2.1e-16 Score=200.46 Aligned_cols=136 Identities=21% Similarity=0.257 Sum_probs=117.2
Q ss_pred hhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccc
Q psy16310 1065 KDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141 (1493)
Q Consensus 1065 k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~Gi 1141 (1493)
+...++..+.. .+.++||||+|+..++.|+..|...|+.+..+||+|++.+|..++..|+.|++.|||||+++++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 34445555543 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEecC-----CCChhHHHHHHhccCCCCCCCeEEEEecC---------CCHHHHHHHHHhccccCC
Q psy16310 1142 DIPGIEHVIHYHV-----PRTSEIYIHRSGRTARANNEGLTLVLIES---------DEIPLYIKMFNSLEKKVD 1201 (1493)
Q Consensus 1142 Dip~v~~VI~~d~-----p~s~~~yiqr~GR~gR~g~~G~~i~l~~~---------~e~~~~~~~~~~~~~~~~ 1201 (1493)
|+|++++||++|. |.+..+|+||+|||||. ..|.+++|++. .|....++++..++....
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 583 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHG 583 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999885 78999999999999996 78999999985 355566666666655443
No 232
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.71 E-value=4.2e-16 Score=192.72 Aligned_cols=369 Identities=18% Similarity=0.208 Sum_probs=208.0
Q ss_pred CCChHHHHhhhhhhhcc---CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 172 KTPTKIQSMVMPSALLA---RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~---~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
..+++-|+.++..+... -...++.+.||||||.+|+=.|-..+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~--------------------------------- 243 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA--------------------------------- 243 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH---------------------------------
Confidence 35778899998754433 367899999999999999776655442
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHH----HHHhcCCCCEEEeCcHHHHHHH
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ----LRILNKCPHILVATPGRLWEFI 324 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~----~~~l~~~~~IiV~TP~~L~~~l 324 (1493)
.|..||||+|-..|-.|+.+.|+... +.++..++++.+.... .....+...|+|+|-..|
T Consensus 244 ---------~GkqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl---- 307 (730)
T COG1198 244 ---------QGKQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL---- 307 (730)
T ss_pred ---------cCCEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----
Confidence 34579999999999999999998875 5788888888765443 333446789999998766
Q ss_pred HcCCccccccccccEEEEecCchhhh---cCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCc
Q psy16310 325 QLGHFHLTELYKINYLVIDETDRMIE---SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPR 401 (1493)
Q Consensus 325 ~~~~~~~~~l~~i~~lViDEAh~ll~---~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1493)
+..|.++.+|||||-|--.- .+..-+.+.+- -.+. ....+
T Consensus 308 ------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA-------------------------~~Ra------~~~~~ 350 (730)
T COG1198 308 ------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA-------------------------VLRA------KKENA 350 (730)
T ss_pred ------cCchhhccEEEEeccccccccCCcCCCcCHHHHH-------------------------HHHH------HHhCC
Confidence 22466899999999995320 01111111111 1110 12346
Q ss_pred eEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhH
Q psy16310 402 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 481 (1493)
Q Consensus 402 q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1493)
++|+-|||.+-+ .+.+...+......+....... . .....+++..........
T Consensus 351 pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a-~------~p~v~iiDmr~e~~~~~~------------------ 403 (730)
T COG1198 351 PVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRA-R------LPRVEIIDMRKEPLETGR------------------ 403 (730)
T ss_pred CEEEecCCCCHH--HHHhhhcCceEEEEcccccccc-C------CCcceEEeccccccccCc------------------
Confidence 899999998633 2222222211111111110000 0 000000000000000000
Q ss_pred HHHhcCCCcchhhHHHhhhhccCCccccccccc---------------------cccccccccccccccCchhhHHHHHH
Q psy16310 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI---------------------GITKTLTESKILCKHDEKDSYLYYFI 540 (1493)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~k~~~l~~~l 540 (1493)
.-...+.+.+...+......+.-+.+.. .+..........|..-......-...
T Consensus 404 -----~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~C 478 (730)
T COG1198 404 -----SLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSC 478 (730)
T ss_pred -----cCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCC
Confidence 0000111111111111111111111100 00000000111111111110000001
Q ss_pred hhCCCcEEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHH--HHHHHHHHhcCCCeEEEEechhhccCCCCCCcEE
Q psy16310 541 LQHPGRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQ--RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616 (1493)
Q Consensus 541 ~~~~~~~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~--R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~V 616 (1493)
-+-++..|+++-. -++++.+.|... +..+..+.++.+... -...+..|..|+..|||.|.+++.|+|+|++++|
T Consensus 479 p~Cgs~~L~~~G~--GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLV 556 (730)
T COG1198 479 PECGSEHLRAVGP--GTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLV 556 (730)
T ss_pred CCCCCCeeEEecc--cHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEE
Confidence 1113445777655 466777777665 566777888776644 3678999999999999999999999999999998
Q ss_pred EEecCC------------CChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 617 IHYHVP------------RTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 617 I~yd~P------------~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
...|.- .....+.|-+|||||++.+|.+++-....|-+.+..+.
T Consensus 557 gvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 557 GVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred EEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 765443 22455789999999999999998887777766655553
No 233
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.70 E-value=1e-14 Score=166.15 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=105.7
Q ss_pred cchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhc
Q psy16310 1063 DEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139 (1493)
Q Consensus 1063 ~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~ 1139 (1493)
.....-|+.-+. ..+.+++|-+-|++.|+.|..+|.+.|+++..+|++...-+|..++..++.|.++|||.-+.+-+
T Consensus 429 ~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLRE 508 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (663)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhc
Confidence 344455554443 34789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccEEEEecC-----CCChhHHHHHHhccCCCCCCCeEEEEecC
Q psy16310 1140 GLDIPGIEHVIHYHV-----PRTSEIYIHRSGRTARANNEGLTLVLIES 1183 (1493)
Q Consensus 1140 GiDip~v~~VI~~d~-----p~s~~~yiqr~GR~gR~g~~G~~i~l~~~ 1183 (1493)
|+|+|.|.+|..+|. .+|..++||-+|||+|. -.|.+|++.+.
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 999999999998875 57899999999999995 47888887643
No 234
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=1.5e-14 Score=179.82 Aligned_cols=348 Identities=17% Similarity=0.199 Sum_probs=211.8
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+| -.|.++|.-.-- +|..| -|+.+.||+|||+++.+|++-..+.
T Consensus 79 lG-m~~ydVQliGg~-~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~-------------------------------- 122 (913)
T PRK13103 79 MG-MRHFDVQLIGGM-TLHEG--KIAEMRTGEGKTLVGTLAVYLNALS-------------------------------- 122 (913)
T ss_pred hC-CCcchhHHHhhh-HhccC--ccccccCCCCChHHHHHHHHHHHHc--------------------------------
Confidence 45 478889988763 55554 4889999999999999998865543
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~ 944 (1493)
|..+-|++||--||.|.++.+..+..++|++++++.++++......... +||++||..-| .|.|+.+
T Consensus 123 ----------G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~ 190 (913)
T PRK13103 123 ----------GKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDN 190 (913)
T ss_pred ----------CCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhcc
Confidence 3459999999999999999999999999999999999887766555444 79999999886 3444332
Q ss_pred cCc---cccccceeEEEecccchhccC-C---------------ChhHHHHHHHHhccc---------------CCCCCc
Q psy16310 945 HFH---LTELYKINYLVIDETDRMIES-G---------------HFPELKNILDRVTMT---------------ETSQPR 990 (1493)
Q Consensus 945 ~~~---~~~l~~l~~lVlDEah~ll~~-~---------------~~~~l~~il~~l~~~---------------~~~~~~ 990 (1493)
... -.....+.+.||||+|.++=+ . .+..+..++..|... --...+
T Consensus 191 ~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~ 270 (913)
T PRK13103 191 MAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTR 270 (913)
T ss_pred ceechhhhcccccceeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCC
Confidence 110 011357899999999996421 1 123344444444110 000111
Q ss_pred eEEEEecc-------------c-c--------------cchHhHHhhhc--cCcC---------------cccccCCC--
Q psy16310 991 QTFVFSAT-------------L-T--------------HSLKNSLNLKK--GQSK---------------SKKVSKGD-- 1023 (1493)
Q Consensus 991 q~ll~SAT-------------l-~--------------~~~~~~~~~~~--~~~~---------------~~~~~~~~-- 1023 (1493)
++ .++-. + + +.+...+.... .... ...+..+.
T Consensus 271 ~v-~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrw 349 (913)
T PRK13103 271 QV-ELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRL 349 (913)
T ss_pred ee-eechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCcc
Confidence 11 11100 0 0 00000000000 0000 00000000
Q ss_pred -------------------------chhHHHH------------------hHhccCCCcEEeccccccccccceeeEEEe
Q psy16310 1024 -------------------------PSIKRLQ------------------DLLNIKSPKIVDLTEKIGITKTLTESKILC 1060 (1493)
Q Consensus 1024 -------------------------~~~~~l~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1493)
-.+..+. .+..+.+-.++.+.........-....+..
T Consensus 350 sdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~ 429 (913)
T PRK13103 350 SEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYL 429 (913)
T ss_pred chHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEc
Confidence 0000000 001111111122211111111111112334
Q ss_pred cccchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCCeEEeehh
Q psy16310 1061 KHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSILLATDV 1136 (1493)
Q Consensus 1061 ~~~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g-~~~VLVaTdv 1136 (1493)
....|...++.-+. ..+.|+||-+.|+...+.|+..|...|++..++++.-. +++.-+-. ..| .-.|-|||++
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATNM 506 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATNM 506 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEeccC
Confidence 44556666655543 34789999999999999999999999999888887643 33322222 345 4579999999
Q ss_pred hhccccCC-------------------------------------CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEE
Q psy16310 1137 AARGLDIP-------------------------------------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179 (1493)
Q Consensus 1137 ~~~GiDip-------------------------------------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~ 1179 (1493)
|+||-||. +=-|||--..|.|..-=-|-.||+||-|.+|.+-.
T Consensus 507 AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 507 AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 99999993 12378888888898888999999999999999999
Q ss_pred EecCCC
Q psy16310 1180 LIESDE 1185 (1493)
Q Consensus 1180 l~~~~e 1185 (1493)
|++-.|
T Consensus 587 ~lSlED 592 (913)
T PRK13103 587 YLSLED 592 (913)
T ss_pred EEEcCc
Confidence 987654
No 235
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=2e-15 Score=182.80 Aligned_cols=401 Identities=14% Similarity=0.130 Sum_probs=223.8
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|.-..- +|..| -|+.+.||+|||+++.+|+....+
T Consensus 76 g~-r~ydvQlig~l-~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL---------------------------------- 117 (764)
T PRK12326 76 GL-RPFDVQLLGAL-RLLAG--DVIEMATGEGKTLAGAIAAAGYAL---------------------------------- 117 (764)
T ss_pred CC-CcchHHHHHHH-HHhCC--CcccccCCCCHHHHHHHHHHHHHH----------------------------------
Confidence 55 69999998885 55554 366999999999999999875543
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHH-HHHHcCC
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLGH 328 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~-~~l~~~~ 328 (1493)
.|..|-|++||--||.|-++++..+...+|++++++.++++........ .+||+.+|..-|- +.|....
T Consensus 118 --------~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm 187 (764)
T PRK12326 118 --------QGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQL 187 (764)
T ss_pred --------cCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhh
Confidence 3456999999999999999999999999999999999998877655554 3699999998652 2332211
Q ss_pred c---cccccccccEEEEecCchhhhcC-C--------------hhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 329 F---HLTELYKINYLVIDETDRMIESG-H--------------FPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 329 ~---~~~~l~~i~~lViDEAh~ll~~~-~--------------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
. .......+.+.||||+|.+|-+. . +..+..+...+... .++
T Consensus 188 ~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~------------~dy-------- 247 (764)
T PRK12326 188 VTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREG------------KDY-------- 247 (764)
T ss_pred ccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcC------------CcE--------
Confidence 0 01113457899999999976322 1 11122222221100 000
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCC--chhhhHHhh------hhcc------CCcccch--
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD--PSIKRLQDL------LNIK------SPKIVDL-- 454 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~------~~~~~~~-- 454 (1493)
. .....+.+.++..=-..+..++.. .. ...... .....+... +... ...+.-+
T Consensus 248 --~---ide~~k~v~LTe~G~~~~e~~l~~----~~--ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe 316 (764)
T PRK12326 248 --E---IDDDGRNVHLTDKGARKVEKALGG----ID--LYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINA 316 (764)
T ss_pred --E---EEcCCCeeEecHHHHHHHHHHcCC----cc--ccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEEC
Confidence 0 000111222221110111111100 00 000000 000000000 0000 0000000
Q ss_pred -hhhhcccccc----chhh------hhhccCC---cchhhHHHH----hcCCCcchhhHHHhhhhccCCccccccccccc
Q psy16310 455 -TEKIGITKTL----TESK------ILCKHDE---KDSYLYYFI----LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516 (1493)
Q Consensus 455 -~~~~~~~~~~----~~~~------~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1493)
++.......+ .+.. .+..... .-.+..+|- ...-..+.......+...+.-.+..+....+.
T Consensus 317 ~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~ 396 (764)
T PRK12326 317 SRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPN 396 (764)
T ss_pred CCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCc
Confidence 0000000000 0000 0000000 011111111 11111222333334444444444433333333
Q ss_pred cccccccccccccCchhhHHHHHHh---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC
Q psy16310 517 TKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 593 (1493)
Q Consensus 517 ~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g 593 (1493)
........++.....|...+...+. ..+.|+||.|.|....+.|+.+|...+++...+++.-...+ ..++. ..|
T Consensus 397 ~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa--~AG 473 (764)
T PRK12326 397 IREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIA--EAG 473 (764)
T ss_pred eeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHH--hcC
Confidence 2222233444455566666665543 34679999999999999999999999999999988744333 22222 234
Q ss_pred -CCeEEEEechhhccCCCCC----------C-----cEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 594 -NNSILLATDVAARGLDIPG----------I-----EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 594 -~~~VLVaTdv~~rGlDip~----------v-----~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
...|.|||++|+||-||.= | =|||....|.|..---|-.||+||-|.+|.+-.|++-+|
T Consensus 474 ~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 474 KYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 3479999999999999951 2 289999999999999999999999999999999987765
No 236
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=1.8e-15 Score=187.92 Aligned_cols=418 Identities=16% Similarity=0.190 Sum_probs=231.5
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|.-.-- +|.. --|+.+.||+|||+++.+|++-..+
T Consensus 80 Gm-~~ydVQliGg~-~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al---------------------------------- 121 (913)
T PRK13103 80 GM-RHFDVQLIGGM-TLHE--GKIAEMRTGEGKTLVGTLAVYLNAL---------------------------------- 121 (913)
T ss_pred CC-CcchhHHHhhh-Hhcc--CccccccCCCCChHHHHHHHHHHHH----------------------------------
Confidence 53 68899987653 5544 4678999999999999999875443
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC-
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG- 327 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~- 327 (1493)
.|..|-|++||--||.|-+.++..+...+|+++++++++++......... +||+++|..-| .|.|...
T Consensus 122 --------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~ 191 (913)
T PRK13103 122 --------SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNM 191 (913)
T ss_pred --------cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccc
Confidence 34569999999999999999999999999999999999988776655554 79999999886 2333322
Q ss_pred ---CccccccccccEEEEecCchhhhc-CC---------------hhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 328 ---HFHLTELYKINYLVIDETDRMIES-GH---------------FPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 328 ---~~~~~~l~~i~~lViDEAh~ll~~-~~---------------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.... ....+.++||||+|.+|=+ .. +..+..+...+....... ........++
T Consensus 192 ~~~~~~~-vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~-~~~~~~~~~y------ 263 (913)
T PRK13103 192 AFSLDDK-FQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEV-EGQVTQEGHF------ 263 (913)
T ss_pred eechhhh-cccccceeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhcc-ccccCCCCCe------
Confidence 1111 1357899999999997622 11 112233333331100000 0000000000
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhH-------H--hhhhcc------CCcccc
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL-------Q--DLLNIK------SPKIVD 453 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~------~~~~~~ 453 (1493)
.. .... +.+.++-.-...+..++.. .+............++..+ . .++... ...+.-
T Consensus 264 ----~i--dek~-~~v~LTe~G~~~~e~~~~~-~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~I 335 (913)
T PRK13103 264 ----TI--DEKT-RQVELNEAGHQFIEEMLTQ-AGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLL 335 (913)
T ss_pred ----EE--EcCC-CeeeechHHHHHHHHHhhh-CCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 00 0111 1111111100111111100 0000000000000000000 0 000000 000000
Q ss_pred h---hhhhcccccc----chhh------hhhcc---CCcchhhHHHH----hcCCCcchhhHHHhhhhccCCcccccccc
Q psy16310 454 L---TEKIGITKTL----TESK------ILCKH---DEKDSYLYYFI----LQHPGRTLCEEIQDLLNIKSPKIVDLTEK 513 (1493)
Q Consensus 454 ~---~~~~~~~~~~----~~~~------~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (1493)
+ ++.......+ .+.. .+... ...-.+..+|- ...-..+.......+...+.-.+..+...
T Consensus 336 VDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTn 415 (913)
T PRK13103 336 IDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPN 415 (913)
T ss_pred EECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCC
Confidence 0 0000000000 0000 00000 00011111111 11122333344445666665555555444
Q ss_pred ccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHH
Q psy16310 514 IGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 590 (1493)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~F 590 (1493)
...........++.....|...+..-+.. .+.|+||-+.|....+.|+.+|...++...++++.....+-. ++.
T Consensus 416 kP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~-IIa-- 492 (913)
T PRK13103 416 KPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAE-IIA-- 492 (913)
T ss_pred CCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHH-HHH--
Confidence 44333333344555566677776655543 467999999999999999999999999988888864433222 222
Q ss_pred hcC-CCeEEEEechhhccCCCC--------------------------------CCc-----EEEEecCCCChHHHHHHH
Q psy16310 591 RDQ-NNSILLATDVAARGLDIP--------------------------------GIE-----HVIHYHVPRTSEIYIHRS 632 (1493)
Q Consensus 591 r~g-~~~VLVaTdv~~rGlDip--------------------------------~v~-----~VI~yd~P~s~~~yiQR~ 632 (1493)
..| ...|.|||++|+||-||. +|. +||-...+.|..-=-|-.
T Consensus 493 ~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLr 572 (913)
T PRK13103 493 QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLR 572 (913)
T ss_pred cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhc
Confidence 344 457999999999999994 122 788889999999999999
Q ss_pred hccccCCCCCeEEEEecCCcch
Q psy16310 633 GRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 633 GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
|||||-|.+|.+-.|++-+|--
T Consensus 573 GRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 573 GRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred cccccCCCCCceEEEEEcCcHH
Confidence 9999999999999999876633
No 237
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.68 E-value=2.1e-15 Score=192.28 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=73.8
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcC-----CCccccccCCCHH---------------------HHHHHHHHHhc-CCCe
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLK-----CSPLPLHASMNQR---------------------QRLKNLDRFRD-QNNS 596 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~-----~~~~~lhg~~~~~---------------------~R~~vl~~Fr~-g~~~ 596 (1493)
+++++|||.++..|..+.+.|.... .....+++..... ....++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 4899999999999999998886552 3334455433221 22478889976 6889
Q ss_pred EEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccC
Q psy16310 597 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638 (1493)
Q Consensus 597 VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~ 638 (1493)
|||.++.+-+|+|.|.+++++..-+-.+. .++|.+||+-|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999999887766654 589999999993
No 238
>KOG0923|consensus
Probab=99.68 E-value=4.3e-15 Score=172.09 Aligned_cols=303 Identities=19% Similarity=0.183 Sum_probs=192.8
Q ss_pred HHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhcc
Q psy16310 794 IQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873 (1493)
Q Consensus 794 iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (1493)
+-.+.+. ++...+-+||.|.||||||.- +|-+ |.... -.
T Consensus 269 ykdell~-av~e~QVLiI~GeTGSGKTTQ--iPQy--L~EaG------------------------------------yt 307 (902)
T KOG0923|consen 269 YKDELLK-AVKEHQVLIIVGETGSGKTTQ--IPQY--LYEAG------------------------------------YT 307 (902)
T ss_pred hHHHHHH-HHHhCcEEEEEcCCCCCcccc--ccHH--HHhcc------------------------------------cc
Confidence 3444453 566778899999999999974 5532 22110 12
Q ss_pred CCCeEEEEEcccHHHHHHHHHHH-HHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcccccc
Q psy16310 874 RNKLYALILAPTRELAIQVQNHI-LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952 (1493)
Q Consensus 874 ~~~~~~lil~PTreLa~Q~~~~~-~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~ 952 (1493)
..+.++-+--|.|--|.-++... ..++..+|..|+.-+.-. .......-|-++|-|+|+.-+... ..|.
T Consensus 308 k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFE------dcTSekTvlKYMTDGmLlREfL~e----pdLa 377 (902)
T KOG0923|consen 308 KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFE------DCTSEKTVLKYMTDGMLLREFLSE----PDLA 377 (902)
T ss_pred cCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEec------cccCcceeeeeecchhHHHHHhcc----cccc
Confidence 33444667779999888877655 335544444443322110 011123357799999998766433 3577
Q ss_pred ceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhH
Q psy16310 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL 1032 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1032 (1493)
..+++|+||||.-- -+.+.+-.++..+.. ..+...+++.|||+.-.-.. .+
T Consensus 378 sYSViiiDEAHERT--L~TDILfgLvKDIar--~RpdLKllIsSAT~DAekFS---~f---------------------- 428 (902)
T KOG0923|consen 378 SYSVIIVDEAHERT--LHTDILFGLVKDIAR--FRPDLKLLISSATMDAEKFS---AF---------------------- 428 (902)
T ss_pred ceeEEEeehhhhhh--hhhhHHHHHHHHHHh--hCCcceEEeeccccCHHHHH---Hh----------------------
Confidence 89999999999621 112233333333321 13678899999999632211 11
Q ss_pred hccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH-----hCCCcEEEEecchhhHHHHHHHHHhc----C--
Q psy16310 1033 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-----QHPGRTLVFCNSISSVKRLTQLLTML----K-- 1101 (1493)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-----~~~~~~IVF~~s~~~~~~l~~~L~~~----~-- 1101 (1493)
+.+..++.+.... -.+...|..++..+-....+.-+. +..|-+|||..-....+...+.|..+ |
T Consensus 429 --FDdapIF~iPGRR---yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGsk 503 (902)
T KOG0923|consen 429 --FDDAPIFRIPGRR---YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSK 503 (902)
T ss_pred --ccCCcEEeccCcc---cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccc
Confidence 1122222222111 111222233333333333332222 23578999999888777766666543 3
Q ss_pred ---CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec------------------CCCChhH
Q psy16310 1102 ---CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH------------------VPRTSEI 1160 (1493)
Q Consensus 1102 ---~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d------------------~p~s~~~ 1160 (1493)
+-+.++|++++...+.+|++---.|-.+|++||++++..|.|++|.+||.-+ .|.|..+
T Consensus 504 i~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAs 583 (902)
T KOG0923|consen 504 IRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKAS 583 (902)
T ss_pred cceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhh
Confidence 3467899999999999999988899999999999999999999999999522 2556777
Q ss_pred HHHHHhccCCCCCCCeEEEEec
Q psy16310 1161 YIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1161 yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
-.||+|||||.| +|.|+-+++
T Consensus 584 A~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 584 ANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred hhhhccccCCCC-CCceEEeec
Confidence 899999999998 999999997
No 239
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=9.4e-15 Score=177.04 Aligned_cols=349 Identities=16% Similarity=0.174 Sum_probs=214.5
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+++|.-+.- ++..| -|+.+.||.|||+++.+|++...+.
T Consensus 75 lg~-r~ydvQlig~l-~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~-------------------------------- 118 (764)
T PRK12326 75 LGL-RPFDVQLLGAL-RLLAG--DVIEMATGEGKTLAGAIAAAGYALQ-------------------------------- 118 (764)
T ss_pred cCC-CcchHHHHHHH-HHhCC--CcccccCCCCHHHHHHHHHHHHHHc--------------------------------
Confidence 354 68999999985 55555 2779999999999999998866543
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHH-HHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~-~~l~~~ 944 (1493)
|..+-|++|+--||.|-++.+..+...+|++++++.++.+........ .+||+.+|..-|- |.|+.+
T Consensus 119 ----------G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDn 186 (764)
T PRK12326 119 ----------GRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQ 186 (764)
T ss_pred ----------CCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhh
Confidence 345999999999999999999999999999999999988876554444 4799999988753 333322
Q ss_pred cC---ccccccceeEEEecccchhccCC---------------ChhHHHHHHHHhcccC---------------------
Q psy16310 945 HF---HLTELYKINYLVIDETDRMIESG---------------HFPELKNILDRVTMTE--------------------- 985 (1493)
Q Consensus 945 ~~---~~~~l~~l~~lVlDEah~ll~~~---------------~~~~l~~il~~l~~~~--------------------- 985 (1493)
.. .......+.+.|+||+|.++-+. .+..+..++..|....
T Consensus 187 m~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~ 266 (764)
T PRK12326 187 LVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKV 266 (764)
T ss_pred hccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHH
Confidence 11 00113457899999999863211 1111222222221000
Q ss_pred -----------C---------------------------CCCceEEEEe---------cccccchHhHHhhhccCcCccc
Q psy16310 986 -----------T---------------------------SQPRQTFVFS---------ATLTHSLKNSLNLKKGQSKSKK 1018 (1493)
Q Consensus 986 -----------~---------------------------~~~~q~ll~S---------ATl~~~~~~~~~~~~~~~~~~~ 1018 (1493)
. -.+-.++++- -.++..+.+.+..+-+......
T Consensus 267 e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e 346 (764)
T PRK12326 267 EKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTET 346 (764)
T ss_pred HHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCC
Confidence 0 0001122211 1122333344433222111000
Q ss_pred c-cCCCchhHHH------------------HhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH---hC
Q psy16310 1019 V-SKGDPSIKRL------------------QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QH 1076 (1493)
Q Consensus 1019 ~-~~~~~~~~~l------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~ 1076 (1493)
. ....-....+ .....+.+-.++.+..............+......|...++..+. ..
T Consensus 347 ~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~ 426 (764)
T PRK12326 347 GEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHET 426 (764)
T ss_pred ceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHc
Confidence 0 0000000000 011111122222222221111111122333444556665555443 45
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCCeEEeehhhhccccCC-----------
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSILLATDVAARGLDIP----------- 1144 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g-~~~VLVaTdv~~~GiDip----------- 1144 (1493)
+.|+||.|.|+...+.++..|...|++...+++.-...+ ..++. ..| .-.|-|||++++||.||.
T Consensus 427 GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~ 503 (764)
T PRK12326 427 GQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDR 503 (764)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHH
Confidence 789999999999999999999999999999988633222 22222 234 356999999999999995
Q ss_pred ----CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1145 ----GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1145 ----~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
+=-|||--..|.|..---|-.||+||-|.+|.+..|++-.|
T Consensus 504 V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 504 VAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred HHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 22379988899999999999999999999999999987554
No 240
>KOG0920|consensus
Probab=99.67 E-value=3.6e-15 Score=185.91 Aligned_cols=331 Identities=22% Similarity=0.265 Sum_probs=206.5
Q ss_pred HHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhc
Q psy16310 793 KIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872 (1493)
Q Consensus 793 ~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1493)
..+...+ .++...+.++++|.||+|||.-----++......
T Consensus 176 ~~r~~Il-~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~-------------------------------------- 216 (924)
T KOG0920|consen 176 KMRDTIL-DAIEENQVVVISGETGCGKTTQVPQFILDEAIES-------------------------------------- 216 (924)
T ss_pred HHHHHHH-HHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc--------------------------------------
Confidence 3445555 4788888999999999999986433455443221
Q ss_pred cCCCeEEEEEcccHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccc
Q psy16310 873 TRNKLYALILAPTRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951 (1493)
Q Consensus 873 ~~~~~~~lil~PTreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l 951 (1493)
.....+++--|.|-=|.-+++.+.. .+...+-.|+.-++..+.. .....+++||-|.|+..+..+ ..+
T Consensus 217 -~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~~----~~l 285 (924)
T KOG0920|consen 217 -GAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQSD----PTL 285 (924)
T ss_pred -CCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeeccc------CCceeEEEecHHHHHHHhccC----ccc
Confidence 1344577777999888888877644 4444455555444432221 123579999999999998763 346
Q ss_pred cceeEEEecccchhc-cCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCc-----h
Q psy16310 952 YKINYLVIDETDRMI-ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-----S 1025 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll-~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 1025 (1493)
..+..+|+||+|.=. +..| +.-+++.+.. ..+..+++++|||+..+.... .++......+..... .
T Consensus 286 ~~vthiivDEVHER~i~~Df---lLi~lk~lL~--~~p~LkvILMSAT~dae~fs~---YF~~~pvi~i~grtfpV~~~f 357 (924)
T KOG0920|consen 286 SGVTHIIVDEVHERSINTDF---LLILLKDLLP--RNPDLKVILMSATLDAELFSD---YFGGCPVITIPGRTFPVKEYF 357 (924)
T ss_pred ccCceeeeeeEEEccCCccc---HHHHHHHHhh--hCCCceEEEeeeecchHHHHH---HhCCCceEeecCCCcchHHHH
Confidence 789999999999632 2223 2222222221 137889999999998443322 222222222222211 1
Q ss_pred hHHHHhHhccCCCcEEecccccccccc-ceeeEEEecccch----hhHHHHHHH--hCCCcEEEEecchhhHHHHHHHHH
Q psy16310 1026 IKRLQDLLNIKSPKIVDLTEKIGITKT-LTESKILCKHDEK----DSYLYYFIL--QHPGRTLVFCNSISSVKRLTQLLT 1098 (1493)
Q Consensus 1026 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k----~~~l~~~l~--~~~~~~IVF~~s~~~~~~l~~~L~ 1098 (1493)
++++........ .+.......... +....+.+...+- ...++..+. ...|.+|||.+.......+...|.
T Consensus 358 LEDil~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~ 434 (924)
T KOG0920|consen 358 LEDILSKTGYVS---EDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLE 434 (924)
T ss_pred HHHHHHHhcccc---cccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhh
Confidence 222222221111 000000000000 0000011111111 122222222 236899999999999999999997
Q ss_pred hc-------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE--------ecCCCCh-----
Q psy16310 1099 ML-------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------YHVPRTS----- 1158 (1493)
Q Consensus 1099 ~~-------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~--------~d~p~s~----- 1158 (1493)
.. .+-+.++|+.|+..++..++..--.|..+|++||++++..|-|++|-+||. ||+-.+.
T Consensus 435 ~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~ 514 (924)
T KOG0920|consen 435 VNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLL 514 (924)
T ss_pred hccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhhe
Confidence 53 245678999999999999999999999999999999999999999999996 6655443
Q ss_pred -----hHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1159 -----EIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1159 -----~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
..-.||.|||||. ..|.||-+++...
T Consensus 515 ~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 515 SWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred eeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 3447999999997 5899999987643
No 241
>KOG1123|consensus
Probab=99.67 E-value=1.1e-15 Score=171.30 Aligned_cols=331 Identities=15% Similarity=0.118 Sum_probs=206.7
Q ss_pred CCCcHHHHhhHHHhhccC--CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 789 KTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~--~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
..++|+|..++...+-+| ++-|++.|.|+|||++-+-++.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-------------------------------------- 342 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-------------------------------------- 342 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee--------------------------------------
Confidence 568999999998766555 4779999999999998544332
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc-
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH- 945 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~- 945 (1493)
.-+.+|||||.+-.-+.||...|..+..-.+-.++.++.+... ....++.|+|+|-.++...-.+.+
T Consensus 343 -------tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~e 410 (776)
T KOG1123|consen 343 -------TIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHE 410 (776)
T ss_pred -------eecccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHH
Confidence 1234699999999999999999998876666677777664322 223567899999776642211111
Q ss_pred ----CccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccC
Q psy16310 946 ----FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK 1021 (1493)
Q Consensus 946 ----~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~ 1021 (1493)
..+..-..++++|+||+|.+...-|...+.-+-.. .-++++||+-++......+... .....
T Consensus 411 aek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH----------cKLGLTATLvREDdKI~DLNFL--IGPKl-- 476 (776)
T KOG1123|consen 411 AEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH----------CKLGLTATLVREDDKITDLNFL--IGPKL-- 476 (776)
T ss_pred HHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH----------hhccceeEEeecccccccccee--ecchh--
Confidence 00011235789999999988776554444333322 3578999997654322111100 00000
Q ss_pred CCchhHHHHhHhccCCCcEEecc--------ccccccccceeeEEEecccchhhHHHHHH---HhCCCcEEEEecchhhH
Q psy16310 1022 GDPSIKRLQDLLNIKSPKIVDLT--------EKIGITKTLTESKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSV 1090 (1493)
Q Consensus 1022 ~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~~~~~~IVF~~s~~~~ 1090 (1493)
...++..+...-++..-....+. ........-......+.+..|....-.++ .+++.++|||..+.-..
T Consensus 477 YEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfAL 556 (776)
T KOG1123|consen 477 YEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFAL 556 (776)
T ss_pred hhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHH
Confidence 01112222221111111111110 00001111111223344555655444333 45688999999988776
Q ss_pred HHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCC-CChhHHHHHHhcc
Q psy16310 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVP-RTSEIYIHRSGRT 1168 (1493)
Q Consensus 1091 ~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p-~s~~~yiqr~GR~ 1168 (1493)
...|-.|. --.++|..+|.+|.+|++.|+. ..++-++-+-|....+|+|..+++|+.... .|..+=.||.||.
T Consensus 557 k~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRI 631 (776)
T KOG1123|consen 557 KEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRI 631 (776)
T ss_pred HHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHH
Confidence 66666552 2358899999999999999996 467888888999999999999999987655 4678889999999
Q ss_pred CCCCC------CCeEEEEecCCCHHH
Q psy16310 1169 ARANN------EGLTLVLIESDEIPL 1188 (1493)
Q Consensus 1169 gR~g~------~G~~i~l~~~~e~~~ 1188 (1493)
-|+-+ ....+.+|+.+-...
T Consensus 632 LRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 632 LRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred HHHhhcCccccceeeeeeeecchHHH
Confidence 99743 234556666554443
No 242
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.65 E-value=1.7e-14 Score=186.77 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=76.4
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCC--CcEEEEe
Q psy16310 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG--IEHVIHY 619 (1493)
Q Consensus 542 ~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~--v~~VI~y 619 (1493)
..+|+++|+++|+...+.++..|......+ ...|.-. .+.+++++|+++...||++|..+.+|+|+|+ ...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 457899999999999999999987654433 3333211 2456899999999999999999999999984 5556665
Q ss_pred cCC----CC--------------------------hHHHHHHHhccccCCC-CCeEEEEecCC
Q psy16310 620 HVP----RT--------------------------SEIYIHRSGRTARANN-EGLTVVLIESD 651 (1493)
Q Consensus 620 d~P----~s--------------------------~~~yiQR~GRagR~g~-~G~~i~l~~~~ 651 (1493)
.+| .+ +..+.|-+||.=|... .|. ++++++.
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv-v~ilD~R 783 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA-VLILDRR 783 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE-EEEECCc
Confidence 555 12 2334699999989765 354 4444443
No 243
>KOG0924|consensus
Probab=99.64 E-value=5.2e-15 Score=171.38 Aligned_cols=304 Identities=18% Similarity=0.183 Sum_probs=186.7
Q ss_pred HHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhc
Q psy16310 793 KIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872 (1493)
Q Consensus 793 ~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1493)
..+.+.+. .+..++-+++++.||||||.- +| +.|+...
T Consensus 359 ~~R~~ll~-~ir~n~vvvivgETGSGKTTQ--l~--QyL~edG------------------------------------- 396 (1042)
T KOG0924|consen 359 ACRDQLLS-VIRENQVVVIVGETGSGKTTQ--LA--QYLYEDG------------------------------------- 396 (1042)
T ss_pred HHHHHHHH-HHhhCcEEEEEecCCCCchhh--hH--HHHHhcc-------------------------------------
Confidence 34556664 677778899999999999975 22 2232210
Q ss_pred cCCCeEEEEEcccHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccc
Q psy16310 873 TRNKLYALILAPTRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951 (1493)
Q Consensus 873 ~~~~~~~lil~PTreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l 951 (1493)
-.....+-+--|.|.-|.-+++.+.. ++..+|-.|+.-+.-.+ .......|-..|-|.|+.-.-. -..|
T Consensus 397 Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEd------vT~~~T~IkymTDGiLLrEsL~----d~~L 466 (1042)
T KOG0924|consen 397 YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFED------VTSEDTKIKYMTDGILLRESLK----DRDL 466 (1042)
T ss_pred cccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeee------cCCCceeEEEeccchHHHHHhh----hhhh
Confidence 01122345556999988888776654 44444444443322111 1112346889999998754321 1346
Q ss_pred cceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHh
Q psy16310 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 1031 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1031 (1493)
.+.++||+||||.-.- -.+.+..+++..... ..+..++..||||... .+. .+
T Consensus 467 ~kYSviImDEAHERsl--NtDilfGllk~~lar--RrdlKliVtSATm~a~--kf~-nf--------------------- 518 (1042)
T KOG0924|consen 467 DKYSVIIMDEAHERSL--NTDILFGLLKKVLAR--RRDLKLIVTSATMDAQ--KFS-NF--------------------- 518 (1042)
T ss_pred hheeEEEechhhhccc--chHHHHHHHHHHHHh--hccceEEEeeccccHH--HHH-HH---------------------
Confidence 6889999999996211 112233333333211 2467899999999622 111 11
Q ss_pred HhccCCCcEEeccccccccccceeeEEEecccchhhHHHHH-----HHhCCCcEEEEecchhhHHHHHHHHH----hc--
Q psy16310 1032 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF-----ILQHPGRTLVFCNSISSVKRLTQLLT----ML-- 1100 (1493)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~-----l~~~~~~~IVF~~s~~~~~~l~~~L~----~~-- 1100 (1493)
++ +-..+.+..... .+.-.+...+.++-....+.. +...+|-+|||......++..+..+. ++
T Consensus 519 -Fg--n~p~f~IpGRTy---PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~ 592 (1042)
T KOG0924|consen 519 -FG--NCPQFTIPGRTY---PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDS 592 (1042)
T ss_pred -hC--CCceeeecCCcc---ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhc
Confidence 11 111111111110 011111111222211111111 11235889999998776665555443 32
Q ss_pred ----CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec------------------CCCCh
Q psy16310 1101 ----KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH------------------VPRTS 1158 (1493)
Q Consensus 1101 ----~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d------------------~p~s~ 1158 (1493)
++.+.++++.|++.-+.+++..-..|-.+++|||++++..+.||++.+||..+ .|.|.
T Consensus 593 ~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~ 672 (1042)
T KOG0924|consen 593 APTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQ 672 (1042)
T ss_pred CCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechh
Confidence 56788999999999999999888889999999999999999999999999633 25667
Q ss_pred hHHHHHHhccCCCCCCCeEEEEecC
Q psy16310 1159 EIYIHRSGRTARANNEGLTLVLIES 1183 (1493)
Q Consensus 1159 ~~yiqr~GR~gR~g~~G~~i~l~~~ 1183 (1493)
..-.||.|||||.| +|.|+-+++.
T Consensus 673 AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 673 ANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred ccchhhccccCCCC-Ccceeeehhh
Confidence 77889999999987 9999999976
No 244
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.8e-14 Score=164.16 Aligned_cols=107 Identities=22% Similarity=0.331 Sum_probs=99.4
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec--
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH-- 620 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd-- 620 (1493)
.+.++||-+-|++.|+.|..+|...|+++..+|+++..-+|..+++..|.|.+.|||.-+.+-+|||+|.|.+|..+|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDAD 524 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 524 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecC
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ---CCCChHHHHHHHhccccCCCCCeEEEEecC
Q psy16310 621 ---VPRTSEIYIHRSGRTARANNEGLTVVLIES 650 (1493)
Q Consensus 621 ---~P~s~~~yiQR~GRagR~g~~G~~i~l~~~ 650 (1493)
+.+|..+.||-+|||||.- .|.++++...
T Consensus 525 KeGFLRse~SLIQtIGRAARN~-~GkvIlYAD~ 556 (663)
T COG0556 525 KEGFLRSERSLIQTIGRAARNV-NGKVILYADK 556 (663)
T ss_pred ccccccccchHHHHHHHHhhcc-CCeEEEEchh
Confidence 4589999999999999964 7998877644
No 245
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.64 E-value=5.7e-15 Score=161.91 Aligned_cols=174 Identities=33% Similarity=0.482 Sum_probs=135.9
Q ss_pred HCCCCCCcHHHHhhHHHhhccC-CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLAR-KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~-~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
..++..|+++|.++++.++ .. +.+++++|||||||.++..+++..+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~-~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~----------------------------- 52 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALL-SGLRDVILAAPTGSGKTLAALLPALEALKRG----------------------------- 52 (201)
T ss_pred ccCCCCCCHHHHHHHHHHH-cCCCcEEEECCCCCchhHHHHHHHHHHhccc-----------------------------
Confidence 4578899999999998655 55 8999999999999999999988776321
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC-cEEEECcHHHHHHHH
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP-HILVATPGRLWEFIQ 942 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~-~IlV~TP~rl~~~l~ 942 (1493)
....++|++||+.++.|+...+..++...........++.........+..+. +|+++|++.+.+.+.
T Consensus 53 -----------~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~ 121 (201)
T smart00487 53 -----------KGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLE 121 (201)
T ss_pred -----------CCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHH
Confidence 13469999999999999999999887665545555666666455555555555 999999999999887
Q ss_pred hCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 943 ~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
... .....++++|+||||.+....+...+..++..+ +...+++++|||+++......
T Consensus 122 ~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-----~~~~~~v~~saT~~~~~~~~~ 178 (201)
T smart00487 122 NDL---LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL-----PKNVQLLLLSATPPEEIENLL 178 (201)
T ss_pred cCC---cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC-----CccceEEEEecCCchhHHHHH
Confidence 654 234578899999999988766777777777766 356889999999986665544
No 246
>KOG4150|consensus
Probab=99.64 E-value=2.9e-15 Score=169.60 Aligned_cols=336 Identities=12% Similarity=0.054 Sum_probs=220.0
Q ss_pred HHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 784 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 784 ~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
..+--+....+|..+|. .+..|+++++.-.|.+||.++|.+..+..++.
T Consensus 280 ~~~~~E~~~~~~~~~~~-~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~------------------------------ 328 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLK-FASEGRADGGNEARQAGKGTCPTSGSRKFQTL------------------------------ 328 (1034)
T ss_pred hcccccchhhhhHHHHh-hhhhcccccccchhhcCCccCcccchhhhhhc------------------------------
Confidence 33444566789999997 67789999999999999999999887765533
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC---CcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHH
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT---PVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEF 940 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~---~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~ 940 (1493)
.+....+++.||.+|+....+.+.-..... .--++-.+.|.+........+.+..++++.|......
T Consensus 329 ----------~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~ 398 (1034)
T KOG4150|consen 329 ----------CHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISA 398 (1034)
T ss_pred ----------CcccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHH
Confidence 222347889999999876544332111110 0112223445555555555667889999999987665
Q ss_pred HHhCcCcc-ccccceeEEEecccchhccC--CC-hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCc
Q psy16310 941 IQLGHFHL-TELYKINYLVIDETDRMIES--GH-FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016 (1493)
Q Consensus 941 l~~~~~~~-~~l~~l~~lVlDEah~ll~~--~~-~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~ 1016 (1493)
+-...... ..+-.+.+++.||+|.++.. .+ ...++.+++.+.-...+.+.|++-.|||+-..+.-...
T Consensus 399 ~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~-------- 470 (1034)
T KOG4150|consen 399 ALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSE-------- 470 (1034)
T ss_pred HhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHH--------
Confidence 53332221 12335678999999975432 11 22344444433333345678999999999755432211
Q ss_pred ccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec---------ccch---hhHHHHHHHhCCCcEEEEe
Q psy16310 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK---------HDEK---DSYLYYFILQHPGRTLVFC 1084 (1493)
Q Consensus 1017 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k---~~~l~~~l~~~~~~~IVF~ 1084 (1493)
..++.....+... ..+..-....+.-+ ...+ ...++.-+..++-++|-||
T Consensus 471 ---------------~~~~~E~~Li~~D---GSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC 532 (1034)
T KOG4150|consen 471 ---------------LANLSELELVTID---GSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFC 532 (1034)
T ss_pred ---------------hcCCcceEEEEec---CCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEec
Confidence 1111111111111 11111111111110 1111 1223333445678999999
Q ss_pred cchhhHHHHHHHHHhc----C----CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC
Q psy16310 1085 NSISSVKRLTQLLTML----K----CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~----~----~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~ 1156 (1493)
.+++.|+.+....+.. + -.+..|.|+....+|.++....-.|+..-+|||++++-||||.+.+.|++.++|.
T Consensus 533 ~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~ 612 (1034)
T KOG4150|consen 533 PSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPG 612 (1034)
T ss_pred cHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCch
Confidence 9999998876655543 2 1345689999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1157 s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
|+..+.|..||+||.++...++.++...-+
T Consensus 613 S~aNl~QQ~GRAGRRNk~SLavyva~~~PV 642 (1034)
T KOG4150|consen 613 SIANLWQQAGRAGRRNKPSLAVYVAFLGPV 642 (1034)
T ss_pred hHHHHHHHhccccccCCCceEEEEEeccch
Confidence 999999999999999999988887765443
No 247
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.64 E-value=3.7e-15 Score=179.58 Aligned_cols=341 Identities=17% Similarity=0.200 Sum_probs=187.9
Q ss_pred CCChHHHHhhhhhhh---c-cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 172 KTPTKIQSMVMPSAL---L-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l---~-~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
..|+.+|..||.... . +.+-+++++.||+|||..+. .++.+|.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~------------------------------ 212 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKS------------------------------ 212 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhc------------------------------
Confidence 358999999986433 2 34459999999999999854 455566542
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcC
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~ 327 (1493)
..-.++|||+.++.|+.|.+..|..+... +-.+..+.+-.... .++|.|+|-+.+...+...
T Consensus 213 ---------~~~KRVLFLaDR~~Lv~QA~~af~~~~P~-~~~~n~i~~~~~~~--------s~~i~lsTyqt~~~~~~~~ 274 (875)
T COG4096 213 ---------GWVKRVLFLADRNALVDQAYGAFEDFLPF-GTKMNKIEDKKGDT--------SSEIYLSTYQTMTGRIEQK 274 (875)
T ss_pred ---------chhheeeEEechHHHHHHHHHHHHHhCCC-ccceeeeecccCCc--------ceeEEEeehHHHHhhhhcc
Confidence 23457999999999999999998887533 33333333322111 3589999999998877654
Q ss_pred Cccccccc--cccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEE
Q psy16310 328 HFHLTELY--KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFV 405 (1493)
Q Consensus 328 ~~~~~~l~--~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il 405 (1493)
......+. .+++|||||||+=. ......|+.++.. -+++
T Consensus 275 ~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~I~dYFdA-----------------------------------~~~g 315 (875)
T COG4096 275 EDEYRRFGPGFFDLIVIDEAHRGI----YSEWSSILDYFDA-----------------------------------ATQG 315 (875)
T ss_pred ccccccCCCCceeEEEechhhhhH----HhhhHHHHHHHHH-----------------------------------HHHh
Confidence 22222233 48999999999643 3334577766632 1334
Q ss_pred Eeeccchhhhhhh-hhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHH
Q psy16310 406 FSATLTHSLKNSL-NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484 (1493)
Q Consensus 406 ~SATl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1493)
++||+...+...- ....+. ..........+.+-+... +..+.+.-.+.. .-+.+
T Consensus 316 LTATP~~~~d~~T~~~F~g~-----Pt~~YsleeAV~DGfLvp-y~vi~i~~~~~~-----------------~G~~~-- 370 (875)
T COG4096 316 LTATPKETIDRSTYGFFNGE-----PTYAYSLEEAVEDGFLVP-YKVIRIDTDFDL-----------------DGWKP-- 370 (875)
T ss_pred hccCcccccccccccccCCC-----cceeecHHHHhhccccCC-CCceEEeeeccc-----------------cCcCc--
Confidence 4788765332110 000000 000000000011100000 000000000000 00000
Q ss_pred hcCCCcchhhHHHhhh--hccCCccccccccccccccccccccccccCchhhHHHHHHhh--C---CCcEEEEecchhhH
Q psy16310 485 LQHPGRTLCEEIQDLL--NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ--H---PGRTLVFCNSISSV 557 (1493)
Q Consensus 485 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~---~~~~IIF~~s~~~a 557 (1493)
.. ...........+ ........++... ..+....+.-...+.+.+.. . .+++||||.+..+|
T Consensus 371 ~~--~serek~~g~~i~~dd~~~~~~d~dr~---------~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHA 439 (875)
T COG4096 371 DA--GSEREKLQGEAIDEDDQNFEARDFDRT---------LVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHA 439 (875)
T ss_pred Cc--cchhhhhhccccCcccccccccccchh---------ccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHH
Confidence 00 000000000000 0000000000000 00111112223344455544 1 36899999999999
Q ss_pred HHHHHHHHhcC-----CCccccccCCCHHHHHHHHHHHhc--CCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 558 KRLTQLLTMLK-----CSPLPLHASMNQRQRLKNLDRFRD--QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 558 ~~L~~~L~~~~-----~~~~~lhg~~~~~~R~~vl~~Fr~--g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
+++...|.... --+..+.|+-.+.+ ..+..|.. .--+|.|+.+++..|+|+|.|.++|.+-.-.|..-|.|
T Consensus 440 e~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~Q 517 (875)
T COG4096 440 ERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQ 517 (875)
T ss_pred HHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHH
Confidence 99999997652 33445666644433 33455544 33478999999999999999999999999999999999
Q ss_pred HHhccccC
Q psy16310 631 RSGRTARA 638 (1493)
Q Consensus 631 R~GRagR~ 638 (1493)
++||+-|.
T Consensus 518 MvGRGTRl 525 (875)
T COG4096 518 MVGRGTRL 525 (875)
T ss_pred HhcCcccc
Confidence 99997784
No 248
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.62 E-value=1.7e-13 Score=168.95 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=81.8
Q ss_pred hHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC----CCCeEEeehhhhcccc
Q psy16310 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ----NNSILLATDVAARGLD 1142 (1493)
Q Consensus 1067 ~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g----~~~VLVaTdv~~~GiD 1142 (1493)
..+..++....|+++|.+.|....+.++..|...---...+.|+.+ .|...+++|+.. ...||++|+.+.+|||
T Consensus 460 ~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvD 537 (636)
T TIGR03117 460 LSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGID 537 (636)
T ss_pred HHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccc
Confidence 3344555667899999999999999999999663223344556543 346688999874 7899999999999999
Q ss_pred C----------CCccEEEEecCCCC-------------------------hhHHHHHHhccCCCCCC--CeEEEEecCC
Q psy16310 1143 I----------PGIEHVIHYHVPRT-------------------------SEIYIHRSGRTARANNE--GLTLVLIESD 1184 (1493)
Q Consensus 1143 i----------p~v~~VI~~d~p~s-------------------------~~~yiqr~GR~gR~g~~--G~~i~l~~~~ 1184 (1493)
+ ..+.+||...+|-. ...+.|-+||.-|.... --.++++++.
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 9 24888998777721 12256888888887543 2234444444
No 249
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.62 E-value=1e-14 Score=159.87 Aligned_cols=174 Identities=33% Similarity=0.488 Sum_probs=133.5
Q ss_pred HCCCCCChHHHHhhhhhhhccC-CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLAR-KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~-~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
..++..|+++|.++++.++ .. ++++++++||||||.+++.+++..+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~-~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~----------------------------- 52 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALL-SGLRDVILAAPTGSGKTLAALLPALEALKRG----------------------------- 52 (201)
T ss_pred ccCCCCCCHHHHHHHHHHH-cCCCcEEEECCCCCchhHHHHHHHHHHhccc-----------------------------
Confidence 3567889999999998544 55 8999999999999999999988776321
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC-CEEEeCcHHHHHHHH
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP-HILVATPGRLWEFIQ 325 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~-~IiV~TP~~L~~~l~ 325 (1493)
...+++|++||+.++.|+...+..+............++......+..+..+. +|+++|++.+.+.+.
T Consensus 53 -----------~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~ 121 (201)
T smart00487 53 -----------KGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLE 121 (201)
T ss_pred -----------CCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHH
Confidence 12469999999999999999998877655545555666666555566666666 999999999999887
Q ss_pred cCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEE
Q psy16310 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFV 405 (1493)
Q Consensus 326 ~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il 405 (1493)
.... ...+++++|+||||++....+...+..++..+ ....++++
T Consensus 122 ~~~~---~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~v~ 165 (201)
T smart00487 122 NDLL---ELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL---------------------------------PKNVQLLL 165 (201)
T ss_pred cCCc---CHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC---------------------------------CccceEEE
Confidence 6542 23478899999999997656777777776654 23468999
Q ss_pred Eeeccchhhhhhh
Q psy16310 406 FSATLTHSLKNSL 418 (1493)
Q Consensus 406 ~SATl~~~~~~~~ 418 (1493)
+|||++.......
T Consensus 166 ~saT~~~~~~~~~ 178 (201)
T smart00487 166 LSATPPEEIENLL 178 (201)
T ss_pred EecCCchhHHHHH
Confidence 9999987665543
No 250
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.61 E-value=1.8e-13 Score=180.90 Aligned_cols=124 Identities=21% Similarity=0.277 Sum_probs=88.4
Q ss_pred HHhCCCcEEEEecchhhHHHHHHHHHhcCC--CccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCC--ccE
Q psy16310 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKC--SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG--IEH 1148 (1493)
Q Consensus 1073 l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~--v~~ 1148 (1493)
+...+|++|||++|....+.++..|..... ....+.-+++...|..++++|+.++..||++|..+.+|||+|+ +.+
T Consensus 748 ~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~ 827 (928)
T PRK08074 748 AKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSC 827 (928)
T ss_pred HHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEE
Confidence 345678999999999999999999975432 1222322444456889999999999999999999999999997 478
Q ss_pred EEEecCCC----C--------------------------hhHHHHHHhccCCCCCCCeEEEEecCC--CHHHHHHHHHhc
Q psy16310 1149 VIHYHVPR----T--------------------------SEIYIHRSGRTARANNEGLTLVLIESD--EIPLYIKMFNSL 1196 (1493)
Q Consensus 1149 VI~~d~p~----s--------------------------~~~yiqr~GR~gR~g~~G~~i~l~~~~--e~~~~~~~~~~~ 1196 (1493)
||...+|- + ...+.|-+||.-|....--+++++++. ...+-+.+.+++
T Consensus 828 viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 828 LVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 88866652 2 122478899999986543345555554 233445565654
No 251
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=3.3e-14 Score=174.40 Aligned_cols=397 Identities=17% Similarity=0.183 Sum_probs=224.2
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHH-HHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL-TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
|. +|+++|.-.-- +|..| -|+.+.||-|||+++.||+. +.+
T Consensus 76 G~-r~ydVQliGgl-vLh~G--~IAEMkTGEGKTLvAtLpayLnAL---------------------------------- 117 (925)
T PRK12903 76 GK-RPYDVQIIGGI-ILDLG--SVAEMKTGEGKTITSIAPVYLNAL---------------------------------- 117 (925)
T ss_pred CC-CcCchHHHHHH-HHhcC--CeeeecCCCCccHHHHHHHHHHHh----------------------------------
Confidence 55 79999988774 56555 47899999999999999985 333
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
.|..|-|++..--||..=..++..+..++|++|+++..++......... .+||..+|..-| .+.|...
T Consensus 118 ---------~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDn 186 (925)
T PRK12903 118 ---------TGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDN 186 (925)
T ss_pred ---------cCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhc
Confidence 2345788888889999888888888888999999999887776655544 379999999865 2344322
Q ss_pred Cc---cccccccccEEEEecCchhhhc-CChh---------------hHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 328 HF---HLTELYKINYLVIDETDRMIES-GHFP---------------ELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 328 ~~---~~~~l~~i~~lViDEAh~ll~~-~~~~---------------~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.. .-.....+.+.||||+|.+|=. ...+ .+..+...+...
T Consensus 187 m~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~--------------------- 245 (925)
T PRK12903 187 MVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKED--------------------- 245 (925)
T ss_pred ccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhcccc---------------------
Confidence 10 0011346789999999997622 2111 111111111000
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCch----hhhHHhhh------hcc------CCccc
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS----IKRLQDLL------NIK------SPKIV 452 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~~------~~~~~ 452 (1493)
.+... .. ...+.++..=-..+..++.+. ...+.. ...+...+ ... ...+.
T Consensus 246 --dy~iD--ek-~k~v~LTe~G~~~~E~~l~i~---------nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~ 311 (925)
T PRK12903 246 --DYKID--EE-TKAISLTEKGIKKANKFFKLK---------NLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIE 311 (925)
T ss_pred --ceEEe--cc-cceEEECHhHHHHHHHHcCCC---------cccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEE
Confidence 00000 11 112222211111111111100 000000 00000000 000 00000
Q ss_pred ch---hhhhccccccc----hh------hhhhcc---CCcchhhHHHH----hcCCCcchhhHHHhhhhccCCccccccc
Q psy16310 453 DL---TEKIGITKTLT----ES------KILCKH---DEKDSYLYYFI----LQHPGRTLCEEIQDLLNIKSPKIVDLTE 512 (1493)
Q Consensus 453 ~~---~~~~~~~~~~~----~~------~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1493)
-+ ++.......+. +. ...... ...-.+..+|- ...-..+.......+...+.-.+.....
T Consensus 312 IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPT 391 (925)
T PRK12903 312 LVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPT 391 (925)
T ss_pred EEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCC
Confidence 00 00000000000 00 000000 00011111111 1111222333334455555554444444
Q ss_pred cccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHH
Q psy16310 513 KIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 589 (1493)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~ 589 (1493)
..+.........++.....|...+...+.. .+.|+||.|.|....+.|+.+|...|+...++++.-. ++..-+-.
T Consensus 392 nkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa 469 (925)
T PRK12903 392 NKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA 469 (925)
T ss_pred CCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH
Confidence 433333333334556666777776665543 3679999999999999999999999999888888633 33322222
Q ss_pred HhcC-CCeEEEEechhhccCCCCCCc--------EEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 590 FRDQ-NNSILLATDVAARGLDIPGIE--------HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 590 Fr~g-~~~VLVaTdv~~rGlDip~v~--------~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
..| ...|.|||++|+||-||.--. |||....|.|..---|-.|||||.|.+|.+-.+++-+|-
T Consensus 470 -~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 470 -KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred -hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 345 468999999999999995322 999999999998889999999999999999888877653
No 252
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.60 E-value=1.4e-15 Score=138.51 Aligned_cols=78 Identities=33% Similarity=0.595 Sum_probs=75.5
Q ss_pred HHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCC
Q psy16310 1095 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172 (1493)
Q Consensus 1095 ~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g 1172 (1493)
+.|+..++.+..+||+|++.+|..+++.|+++...|||||+++++|+|+|++++||++++|.+...|+|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 253
>KOG4150|consensus
Probab=99.60 E-value=5.7e-15 Score=167.29 Aligned_cols=353 Identities=12% Similarity=0.053 Sum_probs=220.6
Q ss_pred HHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHH
Q psy16310 164 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 243 (1493)
Q Consensus 164 ~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1493)
..+..+.-.....+|.+++. .+..|+++++.-.|.+||.++|.+.....+..-
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~-~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-------------------------- 329 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLK-FASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-------------------------- 329 (1034)
T ss_pred HHHhcccccchhhhhHHHHh-hhhhcccccccchhhcCCccCcccchhhhhhcC--------------------------
Confidence 33444556677899999997 677899999999999999999988876555331
Q ss_pred HhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC---CCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH
Q psy16310 244 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK---YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320 (1493)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~---~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L 320 (1493)
....-+++.||++|++.+.+.+.-... ...-.+...+.+.+..........+.+++++.|...
T Consensus 330 --------------~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~ 395 (1034)
T KOG4150|consen 330 --------------HATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEA 395 (1034)
T ss_pred --------------cccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHH
Confidence 112268888999998865443311110 011123334445555555566677889999999988
Q ss_pred HHHHHcCCccc-cccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCC
Q psy16310 321 WEFIQLGHFHL-TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399 (1493)
Q Consensus 321 ~~~l~~~~~~~-~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1493)
...+...+..+ .++....++++||+|..+ .-+..++...+.++-.. ...-..+.
T Consensus 396 ~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~~~~~~~~R~L~~L------------------------~~~F~~~~ 450 (1034)
T KOG4150|consen 396 ISAALAKSLCYNVPVFEELCKDTNSCALYL-FPTKALAQDQLRALSDL------------------------IKGFEASI 450 (1034)
T ss_pred HHHHhhhccccccHHHHHHHhcccceeeee-cchhhHHHHHHHHHHHH------------------------HHHHHhhc
Confidence 76554333322 234467789999999653 33444443333333111 00111245
Q ss_pred CceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchh
Q psy16310 400 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 479 (1493)
Q Consensus 400 ~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1493)
..|++-.|||+...+...- ++.++..-..+... +.+.......++
T Consensus 451 ~~~~~~~~~~~K~~~~~~~-----------------------~~~~~~E~~Li~~D---GSPs~~K~~V~W--------- 495 (1034)
T KOG4150|consen 451 NMGVYDGDTPYKDRTRLRS-----------------------ELANLSELELVTID---GSPSSEKLFVLW--------- 495 (1034)
T ss_pred CcceEeCCCCcCCHHHHHH-----------------------HhcCCcceEEEEec---CCCCccceEEEe---------
Confidence 6788888999865443221 11111111100000 000000000000
Q ss_pred hHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCch---hhHHHHHHhhCCCcEEEEecchhh
Q psy16310 480 LYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK---DSYLYYFILQHPGRTLVFCNSISS 556 (1493)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~l~~~l~~~~~~~IIF~~s~~~ 556 (1493)
.|.. +.. .....+.+ ...++..+..++-++|-||.+|.-
T Consensus 496 -------NP~~--------------------------~P~-----~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~ 537 (1034)
T KOG4150|consen 496 -------NPSA--------------------------PPT-----SKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKL 537 (1034)
T ss_pred -------CCCC--------------------------CCc-----chhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHH
Confidence 0000 000 00000000 112233344566799999999999
Q ss_pred HHHHHHHHHhc----CC----CccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHH
Q psy16310 557 VKRLTQLLTML----KC----SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628 (1493)
Q Consensus 557 a~~L~~~L~~~----~~----~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~y 628 (1493)
|+.+....+.. +. .+..+.||-+..+|+++....--|+..-+|||+.++-||||.+.+.|++.++|.|...+
T Consensus 538 CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl 617 (1034)
T KOG4150|consen 538 CELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANL 617 (1034)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHH
Confidence 98776544432 21 24568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 629 IHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 629 iQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
.|..|||||..++..++.++...-+..
T Consensus 618 ~QQ~GRAGRRNk~SLavyva~~~PVDQ 644 (1034)
T KOG4150|consen 618 WQQAGRAGRRNKPSLAVYVAFLGPVDQ 644 (1034)
T ss_pred HHHhccccccCCCceEEEEEeccchhh
Confidence 999999999999998888877665543
No 254
>KOG0926|consensus
Probab=99.60 E-value=2.3e-14 Score=168.97 Aligned_cols=303 Identities=24% Similarity=0.294 Sum_probs=182.9
Q ss_pred HhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhh-ccCCCeEE
Q psy16310 801 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYA 879 (1493)
Q Consensus 801 ~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 879 (1493)
.++..+--+|+||.||||||.- +|-+ |+... +.. ....+..+
T Consensus 266 EaIn~n~vvIIcGeTGsGKTTQ--vPQF--LYEAG---------------------------------f~s~~~~~~gmI 308 (1172)
T KOG0926|consen 266 EAINENPVVIICGETGSGKTTQ--VPQF--LYEAG---------------------------------FASEQSSSPGMI 308 (1172)
T ss_pred HHhhcCCeEEEecCCCCCcccc--chHH--HHHcc---------------------------------cCCccCCCCCee
Confidence 4666666789999999999974 5533 22110 000 11223356
Q ss_pred EEEcccHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEE
Q psy16310 880 LILAPTRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958 (1493)
Q Consensus 880 lil~PTreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lV 958 (1493)
=|--|.|--|.-+++.... ++. ++-.|...+.-.. .......|.++|-|.|+.-|.... .|...+.||
T Consensus 309 GITqPRRVAaiamAkRVa~EL~~-~~~eVsYqIRfd~------ti~e~T~IkFMTDGVLLrEi~~Df----lL~kYSvII 377 (1172)
T KOG0926|consen 309 GITQPRRVAAIAMAKRVAFELGV-LGSEVSYQIRFDG------TIGEDTSIKFMTDGVLLREIENDF----LLTKYSVII 377 (1172)
T ss_pred eecCchHHHHHHHHHHHHHHhcc-CccceeEEEEecc------ccCCCceeEEecchHHHHHHHHhH----hhhhceeEE
Confidence 6677988877776655433 433 4444544332100 112234799999999998887644 366889999
Q ss_pred ecccchhccCCChhHHHHHHHHhcc--------cCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHH
Q psy16310 959 IDETDRMIESGHFPELKNILDRVTM--------TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030 (1493)
Q Consensus 959 lDEah~ll~~~~~~~l~~il~~l~~--------~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1030 (1493)
|||||.-.- ..+.+-.++.++.. .....+...+++|||+--+. +...+
T Consensus 378 lDEAHERSv--nTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsD--Ftenk-------------------- 433 (1172)
T KOG0926|consen 378 LDEAHERSV--NTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSD--FTENK-------------------- 433 (1172)
T ss_pred echhhhccc--hHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecc--cccCc--------------------
Confidence 999996211 12223333333321 12234678999999995211 11000
Q ss_pred hHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHH----H--H--hCCCcEEEEecchhhHHHHHHHHHhc--
Q psy16310 1031 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF----I--L--QHPGRTLVFCNSISSVKRLTQLLTML-- 1100 (1493)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~----l--~--~~~~~~IVF~~s~~~~~~l~~~L~~~-- 1100 (1493)
..+.+..| ++.+..... +-. +.........++... + . ..+|.+|||+.....+..|+..|+..
T Consensus 434 ~LFpi~pP-likVdARQf-PVs-----IHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p 506 (1172)
T KOG0926|consen 434 RLFPIPPP-LIKVDARQF-PVS-----IHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFP 506 (1172)
T ss_pred eecCCCCc-eeeeecccC-ceE-----EEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCc
Confidence 00111112 232221110 000 111111111222211 1 1 12788999999999999999888432
Q ss_pred --------------------------------------------------------------------------------
Q psy16310 1101 -------------------------------------------------------------------------------- 1100 (1493)
Q Consensus 1101 -------------------------------------------------------------------------------- 1100 (1493)
T Consensus 507 ~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~ 586 (1172)
T KOG0926|consen 507 ESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDE 586 (1172)
T ss_pred cccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccch
Confidence
Q ss_pred -----------------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE--------ecCC
Q psy16310 1101 -----------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------YHVP 1155 (1493)
Q Consensus 1101 -----------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~--------~d~p 1155 (1493)
..-|.++++-++...+.++++.--.|..-++|||+|++..+.||+|.+||. ||--
T Consensus 587 ~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~ 666 (1172)
T KOG0926|consen 587 SEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSK 666 (1172)
T ss_pred hhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccc
Confidence 011445777888888888888888899999999999999999999999996 4444
Q ss_pred CChhHH----------HHHHhccCCCCCCCeEEEEecC
Q psy16310 1156 RTSEIY----------IHRSGRTARANNEGLTLVLIES 1183 (1493)
Q Consensus 1156 ~s~~~y----------iqr~GR~gR~g~~G~~i~l~~~ 1183 (1493)
.+...| -||+|||||.| .|+||-+++.
T Consensus 667 TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 667 TGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred cCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 444433 59999999987 8999999864
No 255
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.60 E-value=1.7e-15 Score=138.05 Aligned_cols=78 Identities=33% Similarity=0.595 Sum_probs=75.5
Q ss_pred HHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCC
Q psy16310 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 639 (1493)
Q Consensus 562 ~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g 639 (1493)
++|+..++.+..+||++++.+|..+++.|.+|...|||||+++++|+|+|++++||+|++|.|+..|+|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 256
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.60 E-value=5.8e-15 Score=149.93 Aligned_cols=117 Identities=35% Similarity=0.602 Sum_probs=108.3
Q ss_pred chhhHHHHHHHhC---CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhcc
Q psy16310 1064 EKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140 (1493)
Q Consensus 1064 ~k~~~l~~~l~~~---~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~G 1140 (1493)
.+...+..++... .+++||||++...++.++..|...+..+..+||+++..+|..+++.|..+...||++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5666677666654 5799999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEE
Q psy16310 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180 (1493)
Q Consensus 1141 iDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l 1180 (1493)
+|+|++++||++++|.+...|+|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 257
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.58 E-value=7.3e-15 Score=149.22 Aligned_cols=117 Identities=35% Similarity=0.603 Sum_probs=108.3
Q ss_pred chhhHHHHHHhhC---CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhcc
Q psy16310 531 EKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607 (1493)
Q Consensus 531 ~k~~~l~~~l~~~---~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rG 607 (1493)
.|...+..++... .+++||||++...++.+...|...+..+..+||+++..+|..+++.|.+|...+|++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5666666666654 5799999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEE
Q psy16310 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647 (1493)
Q Consensus 608 lDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l 647 (1493)
+|+|++++||.+++|.+...|+|++||++|.|..|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998988764
No 258
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=1.3e-12 Score=160.78 Aligned_cols=349 Identities=15% Similarity=0.164 Sum_probs=213.9
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+++|.-.-- +|..| -|+.+.||=|||+++.+|+.-..+.
T Consensus 75 lG~-r~ydVQliGgl-vLh~G--~IAEMkTGEGKTLvAtLpayLnAL~-------------------------------- 118 (925)
T PRK12903 75 LGK-RPYDVQIIGGI-ILDLG--SVAEMKTGEGKTITSIAPVYLNALT-------------------------------- 118 (925)
T ss_pred hCC-CcCchHHHHHH-HHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------------------------------
Confidence 354 78899998874 66665 3789999999999999998644332
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHH-HHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~-~~l~~~ 944 (1493)
|..|-|++..--||.-=++.+..+..++|+.|+++..++........ ..+||+.||..-|- |.|+.+
T Consensus 119 ----------GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDn 186 (925)
T PRK12903 119 ----------GKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDN 186 (925)
T ss_pred ----------CCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhc
Confidence 23477888888999988889999988999999999988776654443 35799999988763 445432
Q ss_pred cC---ccccccceeEEEecccchhccC-C---------------ChhHHHHHHHHhcccC--------------------
Q psy16310 945 HF---HLTELYKINYLVIDETDRMIES-G---------------HFPELKNILDRVTMTE-------------------- 985 (1493)
Q Consensus 945 ~~---~~~~l~~l~~lVlDEah~ll~~-~---------------~~~~l~~il~~l~~~~-------------------- 985 (1493)
.. .-.-...+.+.|+||+|.++=+ . .+..+..++..|....
T Consensus 187 m~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~ 266 (925)
T PRK12903 187 MVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKA 266 (925)
T ss_pred ccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHH
Confidence 11 0011346789999999985311 1 1112222222221000
Q ss_pred -------------------------------------CCCCceEEEEec---------ccccchHhHHhhhccCcCccc-
Q psy16310 986 -------------------------------------TSQPRQTFVFSA---------TLTHSLKNSLNLKKGQSKSKK- 1018 (1493)
Q Consensus 986 -------------------------------------~~~~~q~ll~SA---------Tl~~~~~~~~~~~~~~~~~~~- 1018 (1493)
.-.+-.++++-. .++..+.+.+..+-+......
T Consensus 267 E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~ 346 (925)
T PRK12903 267 NKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPET 346 (925)
T ss_pred HHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCc
Confidence 000112333321 122223333322222111000
Q ss_pred ccCCCchhHHH------------------HhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH---hCC
Q psy16310 1019 VSKGDPSIKRL------------------QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHP 1077 (1493)
Q Consensus 1019 ~~~~~~~~~~l------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~ 1077 (1493)
.....-.+..+ ..+..+.+-.++.+.........-....+......|...++..+. ..+
T Consensus 347 ~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~g 426 (925)
T PRK12903 347 KTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKG 426 (925)
T ss_pred eeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcC
Confidence 00000000000 111122222233332222111111112344455566666665544 347
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCCeEEeehhhhccccCCCcc--------E
Q psy16310 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSILLATDVAARGLDIPGIE--------H 1148 (1493)
Q Consensus 1078 ~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g-~~~VLVaTdv~~~GiDip~v~--------~ 1148 (1493)
.|+||.|.|+...+.|+..|...|++..++++. +.+++.-+=. ..| .-.|.|||++++||.||.=-. |
T Consensus 427 qPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk--~~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLh 503 (925)
T PRK12903 427 QPILIGTAQVEDSETLHELLLEANIPHTVLNAK--QNAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLY 503 (925)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc--chhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcE
Confidence 799999999999999999999999998888886 3344333222 445 457999999999999995222 8
Q ss_pred EEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1149 VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
||....|.|..---|-.||+||.|.+|.+-.|++-.|
T Consensus 504 VIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 504 VLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred EEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 9999999999888899999999999999998887554
No 259
>KOG0925|consensus
Probab=99.58 E-value=3.8e-14 Score=158.91 Aligned_cols=330 Identities=20% Similarity=0.216 Sum_probs=191.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
+..|...+.++.-.+.|++..-- |---|++-+-..+..++-+++++.||||||..---.++......
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~L-Pvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~------------ 90 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRREL-PVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH------------ 90 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcC-chHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh------------
Confidence 45677788888887777665332 33345555556788889999999999999985111111111110
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHH-HHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH-ILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~-~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
. ..+...-|.|.-|.++... ..++ ++..+.-+|..-..+.. ...
T Consensus 91 ---------------------------~--~~v~CTQprrvaamsva~RVadEM----Dv~lG~EVGysIrfEdC--~~~ 135 (699)
T KOG0925|consen 91 ---------------------------L--TGVACTQPRRVAAMSVAQRVADEM----DVTLGEEVGYSIRFEDC--TSP 135 (699)
T ss_pred ---------------------------c--cceeecCchHHHHHHHHHHHHHHh----ccccchhcccccccccc--CCh
Confidence 0 2366777888888887544 3333 33333333321110000 000
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+.-.-.||.|.|+....+++. |.++.+||+||||.-. --.+.+..+++.+...
T Consensus 136 ~T~Lky~tDgmLlrEams~p~----l~~y~viiLDeahERt--lATDiLmGllk~v~~~--------------------- 188 (699)
T KOG0925|consen 136 NTLLKYCTDGMLLREAMSDPL----LGRYGVIILDEAHERT--LATDILMGLLKEVVRN--------------------- 188 (699)
T ss_pred hHHHHHhcchHHHHHHhhCcc----cccccEEEechhhhhh--HHHHHHHHHHHHHHhh---------------------
Confidence 001336899998887665543 5689999999999641 1233455555544222
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
.+...+|++|||+-..-.. ..+. +..+..+.+...
T Consensus 189 ---------rpdLk~vvmSatl~a~Kfq-------------------------~yf~--n~Pll~vpg~~P--------- 223 (699)
T KOG0925|consen 189 ---------RPDLKLVVMSATLDAEKFQ-------------------------RYFG--NAPLLAVPGTHP--------- 223 (699)
T ss_pred ---------CCCceEEEeecccchHHHH-------------------------HHhC--CCCeeecCCCCc---------
Confidence 2457899999998532111 1110 011111110000
Q ss_pred hhhccCCcchhhHHHHhcCCC-cchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcE
Q psy16310 469 ILCKHDEKDSYLYYFILQHPG-RTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 547 (1493)
..++| ...+. ..+...++.++.+ ...+.+|.+
T Consensus 224 ---------vEi~Y--t~e~erDylEaairtV~qi------------------------------------h~~ee~GDi 256 (699)
T KOG0925|consen 224 ---------VEIFY--TPEPERDYLEAAIRTVLQI------------------------------------HMCEEPGDI 256 (699)
T ss_pred ---------eEEEe--cCCCChhHHHHHHHHHHHH------------------------------------HhccCCCCE
Confidence 00000 00000 0111111111111 112347899
Q ss_pred EEEecchhhHHHHHHHHHh----c-----CCCccccccCCCHHHHHHHHHHHhc---C--CCeEEEEechhhccCCCCCC
Q psy16310 548 LVFCNSISSVKRLTQLLTM----L-----KCSPLPLHASMNQRQRLKNLDRFRD---Q--NNSILLATDVAARGLDIPGI 613 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~----~-----~~~~~~lhg~~~~~~R~~vl~~Fr~---g--~~~VLVaTdv~~rGlDip~v 613 (1493)
+||..+.++.+..++.+.. + .+.+.++| +.++.++++.-.. | ..+|+|+|++++..+.|++|
T Consensus 257 lvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgi 332 (699)
T KOG0925|consen 257 LVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGI 332 (699)
T ss_pred EEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccE
Confidence 9999999998888877753 2 24556677 5555555554432 2 25899999999999999999
Q ss_pred cEEEEec------------------CCCChHHHHHHHhccccCCCCCeEEEEecCC
Q psy16310 614 EHVIHYH------------------VPRTSEIYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 614 ~~VI~yd------------------~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
-+||.-+ .|.|..+-.||.||+||. ++|.|+.||+.+
T Consensus 333 v~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 333 VFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 9999633 256777889999999997 499999999863
No 260
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.56 E-value=1.8e-12 Score=160.89 Aligned_cols=132 Identities=21% Similarity=0.220 Sum_probs=99.3
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.|. .|+++|.-+.- ++.. .-|+.+.||.|||+++.+|+.-..+
T Consensus 73 lG~-r~ydvQlig~l-~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL--------------------------------- 115 (870)
T CHL00122 73 LGL-RHFDVQLIGGL-VLND--GKIAEMKTGEGKTLVATLPAYLNAL--------------------------------- 115 (870)
T ss_pred hCC-CCCchHhhhhH-hhcC--CccccccCCCCchHHHHHHHHHHHh---------------------------------
Confidence 465 48899988873 5544 5689999999999999999864332
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHH-HHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~-~~l~~~ 944 (1493)
.|..|-|++++..||.+-++.+..+...+|+.|+++.++++....... ..+||+.+|..-|- |.|+..
T Consensus 116 ---------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDn 184 (870)
T CHL00122 116 ---------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDN 184 (870)
T ss_pred ---------cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhc
Confidence 233589999999999999999999999999999999998887664443 34699999997653 444332
Q ss_pred cC-c--cccccceeEEEecccchh
Q psy16310 945 HF-H--LTELYKINYLVIDETDRM 965 (1493)
Q Consensus 945 ~~-~--~~~l~~l~~lVlDEah~l 965 (1493)
.. . -.....+.+.|+||+|.+
T Consensus 185 m~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 185 MALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred cCcChHHhhccccceeeeecchhh
Confidence 11 0 012345789999999985
No 261
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.55 E-value=2.2e-13 Score=168.84 Aligned_cols=132 Identities=21% Similarity=0.244 Sum_probs=99.7
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.|. +|+++|.-..- ++. +.-|+.+.||.|||+++.+|+.-..+
T Consensus 73 lG~-r~ydvQlig~l-~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL--------------------------------- 115 (870)
T CHL00122 73 LGL-RHFDVQLIGGL-VLN--DGKIAEMKTGEGKTLVATLPAYLNAL--------------------------------- 115 (870)
T ss_pred hCC-CCCchHhhhhH-hhc--CCccccccCCCCchHHHHHHHHHHHh---------------------------------
Confidence 366 58999987763 553 46888999999999999999852221
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHH-HHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~-~~l~~~ 327 (1493)
.|..|-|++++..||.+-++++..+...+|++|+++.++++......... +||+.+|..-|- +.|...
T Consensus 116 ---------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDn 184 (870)
T CHL00122 116 ---------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDN 184 (870)
T ss_pred ---------cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhc
Confidence 23459999999999999999999999999999999999888766555444 699999997542 333221
Q ss_pred ----CccccccccccEEEEecCchhh
Q psy16310 328 ----HFHLTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 328 ----~~~~~~l~~i~~lViDEAh~ll 349 (1493)
.... ....+.+.||||||.+|
T Consensus 185 m~~~~~~~-v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 185 MALSLSDV-VQRPFNYCIIDEVDSIL 209 (870)
T ss_pred cCcChHHh-hccccceeeeecchhhe
Confidence 1111 23457899999999986
No 262
>KOG0953|consensus
Probab=99.55 E-value=8e-14 Score=159.34 Aligned_cols=254 Identities=17% Similarity=0.203 Sum_probs=158.6
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEE
Q psy16310 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYL 957 (1493)
Q Consensus 878 ~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~l 957 (1493)
..++--|.|-||..+++.+.+.+ +.+.+++|......... ...+..+-||-+++. .-..+++.
T Consensus 217 sGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~s-----------v~~~yeVA 279 (700)
T KOG0953|consen 217 SGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN--GNPAQHVSCTVEMVS-----------VNTPYEVA 279 (700)
T ss_pred cceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC--CCcccceEEEEEEee-----------cCCceEEE
Confidence 47899999999999999998875 77888887432211110 123567778877641 11246899
Q ss_pred EecccchhccCCChhHH-HHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccC
Q psy16310 958 VIDETDRMIESGHFPEL-KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 1036 (1493)
Q Consensus 958 VlDEah~ll~~~~~~~l-~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1036 (1493)
||||.+.|-+...+-.+ +.++.... ....+.+=-| .+.-+...+...
T Consensus 280 ViDEIQmm~Dp~RGwAWTrALLGl~A-----dEiHLCGeps---------------------------vldlV~~i~k~T 327 (700)
T KOG0953|consen 280 VIDEIQMMRDPSRGWAWTRALLGLAA-----DEIHLCGEPS---------------------------VLDLVRKILKMT 327 (700)
T ss_pred EehhHHhhcCcccchHHHHHHHhhhh-----hhhhccCCch---------------------------HHHHHHHHHhhc
Confidence 99999988776553333 33333221 1111111001 111111112211
Q ss_pred CCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCC-ccccccCCCHHH
Q psy16310 1037 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS-PLPLHASMNQRQ 1115 (1493)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~m~~~~ 1115 (1493)
... +.+.. ...+.. .......+-.+-.-.+|-+|| |-|++....+...+...|.. +++++|+++++.
T Consensus 328 Gd~-vev~~----YeRl~p------L~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeT 395 (700)
T KOG0953|consen 328 GDD-VEVRE----YERLSP------LVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPET 395 (700)
T ss_pred CCe-eEEEe----ecccCc------ceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCch
Confidence 111 11100 000000 000001111111223666765 66888899999999888766 999999999999
Q ss_pred HHHHHHHHhc--CCCCeEEeehhhhccccCCCccEEEEecCC---------CChhHHHHHHhccCCCCC---CCeEEEEe
Q psy16310 1116 RLKNLDRFRD--QNNSILLATDVAARGLDIPGIEHVIHYHVP---------RTSEIYIHRSGRTARANN---EGLTLVLI 1181 (1493)
Q Consensus 1116 R~~~~~~F~~--g~~~VLVaTdv~~~GiDip~v~~VI~~d~p---------~s~~~yiqr~GR~gR~g~---~G~~i~l~ 1181 (1493)
|.+....|.+ ++++||||||++++|+|+ +++.||.|++- -+..+..|-+|||||.|. .|.+.+|
T Consensus 396 r~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl- 473 (700)
T KOG0953|consen 396 RLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL- 473 (700)
T ss_pred hHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe-
Confidence 9999999987 999999999999999999 99999998764 456788999999999974 4665555
Q ss_pred cCCCHHHHHHHHH
Q psy16310 1182 ESDEIPLYIKMFN 1194 (1493)
Q Consensus 1182 ~~~e~~~~~~~~~ 1194 (1493)
...+...+.++++
T Consensus 474 ~~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 474 HSEDLKLLKRILK 486 (700)
T ss_pred eHhhHHHHHHHHh
Confidence 3445555555544
No 263
>KOG0385|consensus
Probab=99.55 E-value=9.4e-13 Score=155.75 Aligned_cols=392 Identities=19% Similarity=0.201 Sum_probs=226.0
Q ss_pred CChHHHHhhhhhhh---ccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 173 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l---~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
.+++||.+-+.-.+ .+|-|.|..-.-|-|||+.. +.++.++...
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~-------------------------------- 213 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGR-------------------------------- 213 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHh--------------------------------
Confidence 58999998875222 35778999999999999963 2333333211
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH--Hh-cCCCCEEEeCcHHHHHHHHc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR--IL-NKCPHILVATPGRLWEFIQL 326 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~--~l-~~~~~IiV~TP~~L~~~l~~ 326 (1493)
.+.+|| -||+||.-.|.. +.+.|.++. .++++.+++|+........ .+ ....+|+|+|.++.+..-
T Consensus 214 -----~~~~GP-fLVi~P~StL~N-W~~Ef~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk-- 282 (971)
T KOG0385|consen 214 -----KGIPGP-FLVIAPKSTLDN-WMNEFKRFT--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK-- 282 (971)
T ss_pred -----cCCCCC-eEEEeeHhhHHH-HHHHHHHhC--CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--
Confidence 112333 599999988854 566677765 4689999999864433322 11 235799999999876531
Q ss_pred CCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEE
Q psy16310 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406 (1493)
Q Consensus 327 ~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~ 406 (1493)
..+.. + .+++|||||||++-. -...+..+++.+... -.+++
T Consensus 283 ~~lk~--~-~W~ylvIDEaHRiKN--~~s~L~~~lr~f~~~----------------------------------nrLLl 323 (971)
T KOG0385|consen 283 SFLKK--F-NWRYLVIDEAHRIKN--EKSKLSKILREFKTD----------------------------------NRLLL 323 (971)
T ss_pred HHHhc--C-CceEEEechhhhhcc--hhhHHHHHHHHhccc----------------------------------ceeEe
Confidence 11111 1 578999999999843 334455666655322 23455
Q ss_pred eecc-chhhhhhhhhhccccccccc-------------cCCC-chhhhHHhhhhccCCcccch-hhhh-ccccccchhhh
Q psy16310 407 SATL-THSLKNSLNLKKGQSKSKKV-------------SKGD-PSIKRLQDLLNIKSPKIVDL-TEKI-GITKTLTESKI 469 (1493)
Q Consensus 407 SATl-~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~ 469 (1493)
+.|+ -+++.++..+.-........ ..++ ..+..+...+ .|.+..- ...+ ...+.-.+..+
T Consensus 324 TGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL---~pFlLRR~K~dVe~sLppKkE~~i 400 (971)
T KOG0385|consen 324 TGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVL---RPFLLRRIKSDVEKSLPPKKELII 400 (971)
T ss_pred eCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhh---hHHHHHHHHHhHhhcCCCcceeeE
Confidence 5554 33333332221110000000 0000 0111111110 0000000 0000 00001111112
Q ss_pred hhccCCcchhhHHHHhcCCC-----------cchhhHHHhhh-hccCCccccccccccccccccccccccccCchhhHHH
Q psy16310 470 LCKHDEKDSYLYYFILQHPG-----------RTLCEEIQDLL-NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 537 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 537 (1493)
.+.....+..+|..+....- ..+...+.++. ...+|.+.+-... ........+....+.|..+|-
T Consensus 401 yvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~eP---g~pyttdehLv~nSGKm~vLD 477 (971)
T KOG0385|consen 401 YVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEP---GPPYTTDEHLVTNSGKMLVLD 477 (971)
T ss_pred eccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCC---CCCCCcchHHHhcCcceehHH
Confidence 22222222222222211110 00111111111 1233443332111 122333344555666766665
Q ss_pred HHH---hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC---CCeEEEEechhhccCCCC
Q psy16310 538 YFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ---NNSILLATDVAARGLDIP 611 (1493)
Q Consensus 538 ~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g---~~~VLVaTdv~~rGlDip 611 (1493)
.+| ...++++|||..-.....-|-.++...++..+.+.|.++-.+|...++.|... ..-.|++|-+.+-|||+-
T Consensus 478 kLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~ 557 (971)
T KOG0385|consen 478 KLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLT 557 (971)
T ss_pred HHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccc
Confidence 554 55688999999988888888888888899999999999999999999999653 345789999999999999
Q ss_pred CCcEEEEecCCCChHHHHHHHhccccCCCCC--eEEEEecCCcc
Q psy16310 612 GIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESDEI 653 (1493)
Q Consensus 612 ~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G--~~i~l~~~~e~ 653 (1493)
..+.||.||--+||+.-+|..-||-|.|... .+|.|++..-+
T Consensus 558 aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 558 AADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred cccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 9999999999999999999999999999764 55666766543
No 264
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.54 E-value=2.6e-14 Score=181.55 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=110.4
Q ss_pred hhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccC
Q psy16310 532 KDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608 (1493)
Q Consensus 532 k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGl 608 (1493)
+...+...+.. .+.++||||+++..+++|+..|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 44455555543 367899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecC-----CCChHHHHHHHhccccCCCCCeEEEEecCCcchhhh
Q psy16310 609 DIPGIEHVIHYHV-----PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKT 657 (1493)
Q Consensus 609 Dip~v~~VI~yd~-----P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~ 657 (1493)
|+|++++||++|. |.+..+|+||+|||||. ..|.|++|++..+..+.+
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~ 563 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQK 563 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHH
Confidence 9999999999885 78999999999999996 689999999865444333
No 265
>KOG0387|consensus
Probab=99.52 E-value=4.1e-12 Score=151.45 Aligned_cols=126 Identities=23% Similarity=0.302 Sum_probs=107.5
Q ss_pred ccCchhhHHHHHHh---hCCCcEEEEecchhhHHHHHHHHH-hcCCCccccccCCCHHHHHHHHHHHhcCCC--eEEEEe
Q psy16310 528 KHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLT-MLKCSPLPLHASMNQRQRLKNLDRFRDQNN--SILLAT 601 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~---~~~~~~IIF~~s~~~a~~L~~~L~-~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~--~VLVaT 601 (1493)
..+.|..++..++. ..+.++|+|..++.....|-..|. ..++.++.+.|..+...|..++++|.++.. -.|++|
T Consensus 527 k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTT 606 (923)
T KOG0387|consen 527 KRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTT 606 (923)
T ss_pred hhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEe
Confidence 34567777766664 357799999999999999999998 679999999999999999999999997764 368899
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC--eEEEEecCCcc
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESDEI 653 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G--~~i~l~~~~e~ 653 (1493)
-|.+-|+++-+.+.||.||+-+||..-.|..-||=|.|..- .+|.|++..-+
T Consensus 607 rvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 607 RVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred cccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 99999999999999999999999999999999999999764 34556665543
No 266
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=1.1e-11 Score=153.44 Aligned_cols=132 Identities=21% Similarity=0.219 Sum_probs=100.4
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.|. .|.++|.-.-- ++..| -|+.+.||-|||+++.+|+.-..+.
T Consensus 82 lG~-r~ydVQliGgl-~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~-------------------------------- 125 (939)
T PRK12902 82 LGM-RHFDVQLIGGM-VLHEG--QIAEMKTGEGKTLVATLPSYLNALT-------------------------------- 125 (939)
T ss_pred hCC-CcchhHHHhhh-hhcCC--ceeeecCCCChhHHHHHHHHHHhhc--------------------------------
Confidence 354 67889988873 56554 4889999999999999998754433
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-----HHH
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-----WEF 940 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-----~~~ 940 (1493)
|..|-||++.--||..=++.+..+..++|+.|+++.+++....... ...+||+.||+..| .|.
T Consensus 126 ----------GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDn 193 (939)
T PRK12902 126 ----------GKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDN 193 (939)
T ss_pred ----------CCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhh
Confidence 3348999999999999999999999999999999998887655433 34679999999988 343
Q ss_pred HHhCcCccccccceeEEEecccchhc
Q psy16310 941 IQLGHFHLTELYKINYLVIDETDRMI 966 (1493)
Q Consensus 941 l~~~~~~~~~l~~l~~lVlDEah~ll 966 (1493)
|...... .....+.+.||||+|.++
T Consensus 194 m~~~~~~-~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 194 MATDISE-VVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred hcccccc-cccCccceEEEeccccee
Confidence 3321111 124568899999999864
No 267
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.50 E-value=3.7e-12 Score=157.25 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=82.2
Q ss_pred hHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc----CCCeEEEEechhhccCC
Q psy16310 534 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD----QNNSILLATDVAARGLD 609 (1493)
Q Consensus 534 ~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~----g~~~VLVaTdv~~rGlD 609 (1493)
..+..++....|+++|-+.|+...+.++..|...-.......|..+ .+...++.|+. |...||++|+.+.+|||
T Consensus 460 ~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvD 537 (636)
T TIGR03117 460 LSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGID 537 (636)
T ss_pred HHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccc
Confidence 4556666777899999999999999999999653223344555432 34668888987 47899999999999999
Q ss_pred C--------C--CCcEEEEecCCCC-------------------------hHHHHHHHhccccCCCC---CeEEEEecCC
Q psy16310 610 I--------P--GIEHVIHYHVPRT-------------------------SEIYIHRSGRTARANNE---GLTVVLIESD 651 (1493)
Q Consensus 610 i--------p--~v~~VI~yd~P~s-------------------------~~~yiQR~GRagR~g~~---G~~i~l~~~~ 651 (1493)
+ | .+++||...+|.. ...+.|-+||-=|.... |. +.++.+.
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~-i~ilD~R 616 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR-IHMLDGR 616 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE-EEEEeCC
Confidence 9 2 3899998777721 22345888887786553 43 4444444
No 268
>KOG0385|consensus
Probab=99.50 E-value=2.6e-12 Score=152.10 Aligned_cols=338 Identities=19% Similarity=0.215 Sum_probs=211.5
Q ss_pred CCcHHHHhhHHHhh---ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 790 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l---~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
.++++|.+.+..++ ..|-+.|+.-..|-|||+-. +.++..+....
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~------------------------------- 214 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK------------------------------- 214 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-------------------------------
Confidence 68999999987544 45778999999999999853 33343332211
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHH--HH-hcCCCcEEEECcHHHHHHHHh
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL--RI-LNKCPHILVATPGRLWEFIQL 943 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~--~~-l~~~~~IlV~TP~rl~~~l~~ 943 (1493)
..+| --||+||...|.. +.+.|++++ .++++.+++|........ .. .....+|+|+|-+.++.--.
T Consensus 215 ------~~~G-PfLVi~P~StL~N-W~~Ef~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~- 283 (971)
T KOG0385|consen 215 ------GIPG-PFLVIAPKSTLDN-WMNEFKRFT--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS- 283 (971)
T ss_pred ------CCCC-CeEEEeeHhhHHH-HHHHHHHhC--CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-
Confidence 1122 2599999988864 777787775 458888888875433221 12 23468999999998764311
Q ss_pred CcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc-chHh---HHhhhccCcCcc--
Q psy16310 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH-SLKN---SLNLKKGQSKSK-- 1017 (1493)
Q Consensus 944 ~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~-~~~~---~~~~~~~~~~~~-- 1017 (1493)
.+ .--..+++||||||++-.... .+..+++.+. ....++++.|+-. .+.+ ++..........
T Consensus 284 -~l---k~~~W~ylvIDEaHRiKN~~s--~L~~~lr~f~------~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e 351 (971)
T KOG0385|consen 284 -FL---KKFNWRYLVIDEAHRIKNEKS--KLSKILREFK------TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAE 351 (971)
T ss_pred -HH---hcCCceEEEechhhhhcchhh--HHHHHHHHhc------ccceeEeeCCcccccHHHHHHHHHhhchhhccCHH
Confidence 11 112578999999999865433 4556776663 2345777888642 2211 110000000000
Q ss_pred ---------cccCCCchhHHH------------HhHhc--cCC-------------------------------------
Q psy16310 1018 ---------KVSKGDPSIKRL------------QDLLN--IKS------------------------------------- 1037 (1493)
Q Consensus 1018 ---------~~~~~~~~~~~l------------~~~~~--~~~------------------------------------- 1037 (1493)
........+..+ ...+. +.+
T Consensus 352 ~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k 431 (971)
T KOG0385|consen 352 DFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEK 431 (971)
T ss_pred HHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchh
Confidence 000000000000 00000 000
Q ss_pred ----------------CcEEeccccccccccceeeEEEecccchh---hHHHHHHHhCCCcEEEEecchhhHHHHHHHHH
Q psy16310 1038 ----------------PKIVDLTEKIGITKTLTESKILCKHDEKD---SYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 1098 (1493)
Q Consensus 1038 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~---~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~ 1098 (1493)
|-.+.-.+. .........++....|. ..|+..+...+.+||||..-....+-|-.++.
T Consensus 432 ~kL~NI~mQLRKccnHPYLF~g~eP---g~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~ 508 (971)
T KOG0385|consen 432 TKLQNIMMQLRKCCNHPYLFDGAEP---GPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCM 508 (971)
T ss_pred hHHHHHHHHHHHhcCCccccCCCCC---CCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHH
Confidence 000000000 00000011112223333 33444456678899999998888888888888
Q ss_pred hcCCCccccccCCCHHHHHHHHHHHhcCC---CCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCC
Q psy16310 1099 MLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175 (1493)
Q Consensus 1099 ~~~~~~~~lhg~m~~~~R~~~~~~F~~g~---~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G 1175 (1493)
-.++...-+-|.++..+|...++.|.... .-.|++|-+.+-|||+...++||.||--.++..=+|..-||-|-|+..
T Consensus 509 ~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K 588 (971)
T KOG0385|consen 509 LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKK 588 (971)
T ss_pred hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcC
Confidence 88999999999999999999999998643 457899999999999999999999999999999999999999999876
Q ss_pred eEEE--EecCCC
Q psy16310 1176 LTLV--LIESDE 1185 (1493)
Q Consensus 1176 ~~i~--l~~~~e 1185 (1493)
.+.+ |++.+-
T Consensus 589 ~V~V~RLitent 600 (971)
T KOG0385|consen 589 PVVVYRLITENT 600 (971)
T ss_pred ceEEEEEeccch
Confidence 5555 455543
No 269
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.49 E-value=3.8e-12 Score=168.39 Aligned_cols=117 Identities=22% Similarity=0.312 Sum_probs=83.8
Q ss_pred HHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCC--CccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCC
Q psy16310 535 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC--SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612 (1493)
Q Consensus 535 ~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~--~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~ 612 (1493)
.+..++...++++|||++|+...+.++..|..... ....+.-+++...|..+++.|+.++..||++|..+.+|||+|+
T Consensus 743 ~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg 822 (928)
T PRK08074 743 YIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPG 822 (928)
T ss_pred HHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCC
Confidence 34444555678999999999999999999875422 1222322444456788999999999999999999999999997
Q ss_pred --CcEEEEecCCC----C--------------------------hHHHHHHHhccccCCCCCeEEEEecCC
Q psy16310 613 --IEHVIHYHVPR----T--------------------------SEIYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 613 --v~~VI~yd~P~----s--------------------------~~~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
+.+||...+|. + +..+.|-+||.=|....--+++++++.
T Consensus 823 ~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 823 DELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred CceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 47888766552 1 233468899998977542234444443
No 270
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=2.4e-12 Score=159.03 Aligned_cols=131 Identities=21% Similarity=0.222 Sum_probs=101.1
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|.-.-- +|.. --|+.+.||-||||++.+|+.-.-+
T Consensus 83 G~-r~ydVQliGgl-~Lh~--G~IAEM~TGEGKTL~atlpaylnAL---------------------------------- 124 (939)
T PRK12902 83 GM-RHFDVQLIGGM-VLHE--GQIAEMKTGEGKTLVATLPSYLNAL---------------------------------- 124 (939)
T ss_pred CC-CcchhHHHhhh-hhcC--CceeeecCCCChhHHHHHHHHHHhh----------------------------------
Confidence 55 68999987763 5544 4688999999999999999863322
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-----HHHH
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-----WEFI 324 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-----~~~l 324 (1493)
.|..|-|++++--||..=.+++..+..++|++|+++.+++......... .+||+.+|+..| .+.|
T Consensus 125 --------~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDYLRDnm 194 (939)
T PRK12902 125 --------TGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNY--ACDITYATNSELGFDYLRDNM 194 (939)
T ss_pred --------cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhc--CCCeEEecCCcccccchhhhh
Confidence 3445999999999999999999999999999999999888776554433 479999999987 5555
Q ss_pred HcCCccccccccccEEEEecCchhh
Q psy16310 325 QLGHFHLTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 325 ~~~~~~~~~l~~i~~lViDEAh~ll 349 (1493)
....... ....+.+.||||||.+|
T Consensus 195 ~~~~~~~-vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 195 ATDISEV-VQRPFNYCVIDEVDSIL 218 (939)
T ss_pred ccccccc-ccCccceEEEeccccee
Confidence 4322222 24568899999999976
No 271
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.44 E-value=2.1e-12 Score=132.81 Aligned_cols=144 Identities=37% Similarity=0.470 Sum_probs=107.4
Q ss_pred CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccH
Q psy16310 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTr 886 (1493)
+++++.+|||+|||..++.++...... ....+++|++|++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------------------------------------~~~~~~lv~~p~~ 40 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------------------------------------LKGGQVLVLAPTR 40 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------------------------------------ccCCCEEEEcCcH
Confidence 468999999999999988887765422 2335799999999
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhc
Q psy16310 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966 (1493)
Q Consensus 887 eLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll 966 (1493)
.|+.|+...+...... +..+..+.++..............+|+++|++.+...+..... .....+++|+||+|.+.
T Consensus 41 ~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~---~~~~~~~iiiDE~h~~~ 116 (144)
T cd00046 41 ELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKL---SLKKLDLLILDEAHRLL 116 (144)
T ss_pred HHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCc---chhcCCEEEEeCHHHHh
Confidence 9999999999887765 6788888887766666655567789999999999887765431 23467899999999987
Q ss_pred cCCChhHHHHHHHHhcccCCCCCceEEEEeccc
Q psy16310 967 ESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999 (1493)
Q Consensus 967 ~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl 999 (1493)
...+......... ......+++++|||+
T Consensus 117 ~~~~~~~~~~~~~-----~~~~~~~~i~~saTp 144 (144)
T cd00046 117 NQGFGLLGLKILL-----KLPKDRQVLLLSATP 144 (144)
T ss_pred hcchHHHHHHHHh-----hCCccceEEEEeccC
Confidence 7654332211111 123667899999996
No 272
>KOG1123|consensus
Probab=99.43 E-value=6.6e-13 Score=149.29 Aligned_cols=339 Identities=15% Similarity=0.140 Sum_probs=197.1
Q ss_pred CCChHHHHhhhhhhhccC--CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 172 KTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~--~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
..++|||..++...+-+| +.-||+.|.|+|||++-+-.+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-------------------------------------- 342 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-------------------------------------- 342 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee--------------------------------------
Confidence 458999999998655433 4678899999999998433322
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
.-+.+||+||.+---+.|+...|..++..-+-.++.++.+... ....++.|+|+|..++..--.+.+-
T Consensus 343 -------tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~e 410 (776)
T KOG1123|consen 343 -------TIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHE 410 (776)
T ss_pred -------eecccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHH
Confidence 1234699999999999999999988876555566666665432 2345678999998776432111100
Q ss_pred ---cccc--cccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEE
Q psy16310 330 ---HLTE--LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404 (1493)
Q Consensus 330 ---~~~~--l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 404 (1493)
-+.+ -..+.++|+||+|.+-..-|...+.-+-.+ -.+
T Consensus 411 aek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH--------------------------------------cKL 452 (776)
T KOG1123|consen 411 AEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH--------------------------------------CKL 452 (776)
T ss_pred HHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH--------------------------------------hhc
Confidence 0111 124789999999987554443333322221 256
Q ss_pred EEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHH
Q psy16310 405 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484 (1493)
Q Consensus 405 l~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1493)
+++||+-++-.....+... ....-+ ...|+. +.. .+......-..++|+.... .|..| +
T Consensus 453 GLTATLvREDdKI~DLNFL-------IGPKlY---EAnWmd--------L~~-kGhIA~VqCaEVWCpMt~e-Fy~eY-L 511 (776)
T KOG1123|consen 453 GLTATLVREDDKITDLNFL-------IGPKLY---EANWMD--------LQK-KGHIAKVQCAEVWCPMTPE-FYREY-L 511 (776)
T ss_pred cceeEEeecccccccccee-------ecchhh---hccHHH--------HHh-CCceeEEeeeeeecCCCHH-HHHHH-H
Confidence 8899986543222111000 000000 011111 110 0111111112223322111 11111 1
Q ss_pred hcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchh---hHHHHHHhhCCCcEEEEecchhhHHHHH
Q psy16310 485 LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD---SYLYYFILQHPGRTLVFCNSISSVKRLT 561 (1493)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~---~~l~~~l~~~~~~~IIF~~s~~~a~~L~ 561 (1493)
..... -+.++ ..-...|+ .+|..+-...+.++|||..........+
T Consensus 512 ~~~t~------kr~lL-------------------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YA 560 (776)
T KOG1123|consen 512 RENTR------KRMLL-------------------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYA 560 (776)
T ss_pred hhhhh------hhhee-------------------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHH
Confidence 10000 00000 01111222 3344444556789999988866555544
Q ss_pred HHHHhcCCCccccccCCCHHHHHHHHHHHhc-CCCeEEEEechhhccCCCCCCcEEEEecCC-CChHHHHHHHhccccCC
Q psy16310 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVP-RTSEIYIHRSGRTARAN 639 (1493)
Q Consensus 562 ~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~-g~~~VLVaTdv~~rGlDip~v~~VI~yd~P-~s~~~yiQR~GRagR~g 639 (1493)
-.| + --.++|..+|.+|+++++.|.- ..++-++-+-|+...||+|..+++|+...- -|-..=-||.||.-|+.
T Consensus 561 ikl---~--KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 561 IKL---G--KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred HHc---C--CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 433 2 2458999999999999999985 568899999999999999999999987644 35666789999999975
Q ss_pred CC------CeEEEEecCCcchh
Q psy16310 640 NE------GLTVVLIESDEIPL 655 (1493)
Q Consensus 640 ~~------G~~i~l~~~~e~~~ 655 (1493)
+. ...|.|++.+-..+
T Consensus 636 k~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 636 KRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred hcCccccceeeeeeeecchHHH
Confidence 42 34556665554333
No 273
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.42 E-value=3.5e-12 Score=159.87 Aligned_cols=91 Identities=27% Similarity=0.253 Sum_probs=72.5
Q ss_pred EEEEecchhhHHHHHHHHHhc----C--CCccccccCCCHHHHHHHHHHH----------------------hc----CC
Q psy16310 1080 TLVFCNSISSVKRLTQLLTML----K--CSPLPLHASMNQRQRLKNLDRF----------------------RD----QN 1127 (1493)
Q Consensus 1080 ~IVF~~s~~~~~~l~~~L~~~----~--~~~~~lhg~m~~~~R~~~~~~F----------------------~~----g~ 1127 (1493)
.+|-++++..+..++..|-.. + +.+.+||+..+...|..++++. ++ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 477888888888888887654 2 3466799999888887766553 11 35
Q ss_pred CCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1128 ~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
..|+|||.|++.|+|+ +.+++| .-|.++.+.+||+||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 6899999999999999 788887 457889999999999999875
No 274
>COG4889 Predicted helicase [General function prediction only]
Probab=99.42 E-value=4.4e-13 Score=159.08 Aligned_cols=93 Identities=23% Similarity=0.410 Sum_probs=77.1
Q ss_pred cEEEEecchhhHHHHHHHHHhc-------------CC--CccccccCCCHHHHHHHHH---HHhcCCCCeEEeehhhhcc
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTML-------------KC--SPLPLHASMNQRQRLKNLD---RFRDQNNSILLATDVAARG 1140 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~-------------~~--~~~~lhg~m~~~~R~~~~~---~F~~g~~~VLVaTdv~~~G 1140 (1493)
+.|-||.++++...+++.+... ++ .+-.+.|.|...+|...+. .|...+++||----.+++|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 6788999999988888776421 33 3444568899999955444 3567889999999999999
Q ss_pred ccCCCccEEEEecCCCChhHHHHHHhccCCC
Q psy16310 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171 (1493)
Q Consensus 1141 iDip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 1171 (1493)
+|+|..+.||.|++-.+.-+.+|.+||+.|.
T Consensus 542 VDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 542 VDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred CCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999996
No 275
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.42 E-value=4.2e-12 Score=130.60 Aligned_cols=121 Identities=38% Similarity=0.524 Sum_probs=94.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccH
Q psy16310 190 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTr 269 (1493)
+++++++|||+|||.+++..+...... ....+++|++|++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------------------------------------~~~~~~lv~~p~~ 40 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------------------------------------LKGGQVLVLAPTR 40 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------------------------------------ccCCCEEEEcCcH
Confidence 478999999999999988887765421 1235799999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhh
Q psy16310 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 270 eLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll 349 (1493)
.|+.|+...+...... +..+..+.+...............+|+++|++.+...+...... ...+.++||||+|.+.
T Consensus 41 ~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~---~~~~~~iiiDE~h~~~ 116 (144)
T cd00046 41 ELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLS---LKKLDLLILDEAHRLL 116 (144)
T ss_pred HHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcc---hhcCCEEEEeCHHHHh
Confidence 9999999998887655 67788888877766666666677899999999998877654321 2367899999999987
Q ss_pred hcCCh
Q psy16310 350 ESGHF 354 (1493)
Q Consensus 350 ~~~~~ 354 (1493)
.....
T Consensus 117 ~~~~~ 121 (144)
T cd00046 117 NQGFG 121 (144)
T ss_pred hcchH
Confidence 65443
No 276
>KOG0925|consensus
Probab=99.41 E-value=1.2e-11 Score=139.21 Aligned_cols=327 Identities=19% Similarity=0.184 Sum_probs=189.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
+..|...+.++...+.|++.. .-|-=-|..-+-..+..++-++++|.||||||.- +|-+..-...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~-~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~------------ 88 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRR-ELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYEL------------ 88 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHh-cCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHH------------
Confidence 567888888888887776543 2233335555556788888999999999999964 4422211110
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
.....+..--|.|--|.+++..... .+++..+--+|-. .... .-...+
T Consensus 89 ---------------------------~~~~~v~CTQprrvaamsva~RVad---EMDv~lG~EVGys-IrfE-dC~~~~ 136 (699)
T KOG0925|consen 89 ---------------------------SHLTGVACTQPRRVAAMSVAQRVAD---EMDVTLGEEVGYS-IRFE-DCTSPN 136 (699)
T ss_pred ---------------------------hhccceeecCchHHHHHHHHHHHHH---Hhccccchhcccc-cccc-ccCChh
Confidence 0012356666888888887765533 3334433333311 1100 000000
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
.-.-.+|-|.|+.-.-... .+...++||+||||.-.- -.+.+..+++.+... .+...++.+|||+-..-.+
T Consensus 137 T~Lky~tDgmLlrEams~p----~l~~y~viiLDeahERtl--ATDiLmGllk~v~~~--rpdLk~vvmSatl~a~Kfq- 207 (699)
T KOG0925|consen 137 TLLKYCTDGMLLREAMSDP----LLGRYGVIILDEAHERTL--ATDILMGLLKEVVRN--RPDLKLVVMSATLDAEKFQ- 207 (699)
T ss_pred HHHHHhcchHHHHHHhhCc----ccccccEEEechhhhhhH--HHHHHHHHHHHHHhh--CCCceEEEeecccchHHHH-
Confidence 0122456666655443322 366789999999996210 012233344433322 2578999999999522111
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH-----hCCCcEE
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-----QHPGRTL 1081 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-----~~~~~~I 1081 (1493)
. ++.+..++.+.... .+...|......+.....+..+. ..+|-++
T Consensus 208 ------------------------~--yf~n~Pll~vpg~~----PvEi~Yt~e~erDylEaairtV~qih~~ee~GDil 257 (699)
T KOG0925|consen 208 ------------------------R--YFGNAPLLAVPGTH----PVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDIL 257 (699)
T ss_pred ------------------------H--HhCCCCeeecCCCC----ceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEE
Confidence 1 12233333333211 11111211222222333333222 3488999
Q ss_pred EEecchhhHHHHHHHHHh----cC-----CCccccccCCCHHHHHHHHHHHhc---C--CCCeEEeehhhhccccCCCcc
Q psy16310 1082 VFCNSISSVKRLTQLLTM----LK-----CSPLPLHASMNQRQRLKNLDRFRD---Q--NNSILLATDVAARGLDIPGIE 1147 (1493)
Q Consensus 1082 VF~~s~~~~~~l~~~L~~----~~-----~~~~~lhg~m~~~~R~~~~~~F~~---g--~~~VLVaTdv~~~GiDip~v~ 1147 (1493)
||.......+..++.+.. ++ ..+.++| +.+..++++--.. | ..+|+|+|++++..+-+++|.
T Consensus 258 vFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv 333 (699)
T KOG0925|consen 258 VFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIV 333 (699)
T ss_pred EEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEE
Confidence 999998887777776652 22 4566777 3333343333221 2 357999999999999999999
Q ss_pred EEEEec------------------CCCChhHHHHHHhccCCCCCCCeEEEEecCC
Q psy16310 1148 HVIHYH------------------VPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184 (1493)
Q Consensus 1148 ~VI~~d------------------~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 1184 (1493)
+||.-+ .|.|..+--||.||+||. ++|.|+.+++..
T Consensus 334 ~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 334 FVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999633 266788889999999996 699999999753
No 277
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.39 E-value=6.9e-13 Score=122.25 Aligned_cols=81 Identities=41% Similarity=0.695 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCC
Q psy16310 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171 (1493)
Q Consensus 1092 ~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 1171 (1493)
.++..|...++.+..+||+|+..+|..+++.|..+...|||+|+++++|+|+|++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy16310 1172 N 1172 (1493)
Q Consensus 1172 g 1172 (1493)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 278
>KOG0390|consensus
Probab=99.39 E-value=3.5e-11 Score=148.26 Aligned_cols=121 Identities=19% Similarity=0.226 Sum_probs=90.7
Q ss_pred CchhhHHHHHHhhCCCcEEEEec---chhhHHH-HHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC---CeEEEEec
Q psy16310 530 DEKDSYLYYFILQHPGRTLVFCN---SISSVKR-LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATD 602 (1493)
Q Consensus 530 ~~k~~~l~~~l~~~~~~~IIF~~---s~~~a~~-L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~---~~VLVaTd 602 (1493)
+.++..|..++.....++++|+. ....... +..+++-.|..+..+||.|+..+|..+++.|.+-. .-.|.+|-
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 45666666666555445554444 3333333 33444555999999999999999999999997633 33566777
Q ss_pred hhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE--EEEecC
Q psy16310 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--VVLIES 650 (1493)
Q Consensus 603 v~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~--i~l~~~ 650 (1493)
+.+.||++-+.+.||.||+++||..=.|.++|+=|.|..-.| |.|++.
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecC
Confidence 888999999999999999999999999999999999987544 445544
No 279
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.39 E-value=8.9e-13 Score=121.49 Aligned_cols=81 Identities=41% Similarity=0.695 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccC
Q psy16310 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638 (1493)
Q Consensus 559 ~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~ 638 (1493)
.++..|...++.+..+||+|+..+|..+++.|++|...|||+|+++++|+|+|++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy16310 639 N 639 (1493)
Q Consensus 639 g 639 (1493)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 280
>KOG0953|consensus
Probab=99.37 E-value=2.6e-12 Score=147.13 Aligned_cols=112 Identities=22% Similarity=0.340 Sum_probs=91.8
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCC-ccccccCCCHHHHHHHHHHHhc--CCCeEEEEechhhccCCCCCCcEEEEec
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLKCS-PLPLHASMNQRQRLKNLDRFRD--QNNSILLATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~~~-~~~lhg~~~~~~R~~vl~~Fr~--g~~~VLVaTdv~~rGlDip~v~~VI~yd 620 (1493)
+|.||| |-|++....+...+...+.. +++++|++++..|..--..|.+ ++++||||||..++|+|+ +++.||.|+
T Consensus 357 ~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~s 434 (700)
T KOG0953|consen 357 PGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYS 434 (700)
T ss_pred CCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEee
Confidence 455655 66788888899889888766 9999999999999999999977 999999999999999999 899999988
Q ss_pred CC---------CChHHHHHHHhccccCCCC---CeEEEEecCCcchhhhh
Q psy16310 621 VP---------RTSEIYIHRSGRTARANNE---GLTVVLIESDEIPLKTK 658 (1493)
Q Consensus 621 ~P---------~s~~~yiQR~GRagR~g~~---G~~i~l~~~~e~~~~~~ 658 (1493)
+- -++..-.|.+|||||.|.. |.+.++. .+|+....+
T Consensus 435 l~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~ 483 (700)
T KOG0953|consen 435 LIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH-SEDLKLLKR 483 (700)
T ss_pred cccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee-HhhHHHHHH
Confidence 64 5577889999999998753 7777765 334444333
No 281
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.36 E-value=2.6e-10 Score=146.41 Aligned_cols=117 Identities=21% Similarity=0.365 Sum_probs=81.9
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhc-CCCccccccCCCHHHHHHHHHHHhc----CCCCeEEeehhhhccccCCC--ccE
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTML-KCSPLPLHASMNQRQRLKNLDRFRD----QNNSILLATDVAARGLDIPG--IEH 1148 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~m~~~~R~~~~~~F~~----g~~~VLVaTdv~~~GiDip~--v~~ 1148 (1493)
.++.++||++|....+.++..|... +.. ...+|. ..|..+++.|++ |+..||++|..+.+|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 5677999999999999999998743 333 334554 256778877774 67889999999999999987 788
Q ss_pred EEEecCCC----Ch--------------------------hHHHHHHhccCCCCCCCeEEEEecCC--CHHHHHHHHHhc
Q psy16310 1149 VIHYHVPR----TS--------------------------EIYIHRSGRTARANNEGLTLVLIESD--EIPLYIKMFNSL 1196 (1493)
Q Consensus 1149 VI~~d~p~----s~--------------------------~~yiqr~GR~gR~g~~G~~i~l~~~~--e~~~~~~~~~~~ 1196 (1493)
||...+|- ++ ..+.|-+||.-|....--+++++++. ...+-+.+++++
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhC
Confidence 99877662 21 12468889999985443344455544 223445666654
No 282
>KOG0387|consensus
Probab=99.36 E-value=1.4e-10 Score=138.75 Aligned_cols=131 Identities=22% Similarity=0.284 Sum_probs=106.7
Q ss_pred hhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHH-hcCCCccccccCCCHHHHHHHHHHHhcCCC--CeEEeehhhh
Q psy16310 1065 KDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLT-MLKCSPLPLHASMNQRQRLKNLDRFRDQNN--SILLATDVAA 1138 (1493)
Q Consensus 1065 k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~-~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~--~VLVaTdv~~ 1138 (1493)
|...+..++. ..+.++|+|..++...+.|...|. ..|+...-+.|..+...|..++++|..+.. -.|++|-|.+
T Consensus 531 Km~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGG 610 (923)
T KOG0387|consen 531 KMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGG 610 (923)
T ss_pred hHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccc
Confidence 4444544443 347799999999999999999998 679999999999999999999999998764 3688999999
Q ss_pred ccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEE--EecCCC---HHHHHHHHHh
Q psy16310 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV--LIESDE---IPLYIKMFNS 1195 (1493)
Q Consensus 1139 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~--l~~~~e---~~~~~~~~~~ 1195 (1493)
-|+++-..+-||.||+-+++..=.|..-|+=|.|+.-.+++ |++..- .-+.+.+++.
T Consensus 611 LGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq 672 (923)
T KOG0387|consen 611 LGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQ 672 (923)
T ss_pred cccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998654443 455543 3344444443
No 283
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.34 E-value=6.1e-12 Score=136.10 Aligned_cols=157 Identities=20% Similarity=0.113 Sum_probs=100.7
Q ss_pred CCcHHHHhhHHHhhc------cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 790 TPTKIQSMVMPSALL------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~------~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
+|+|+|.+++..++. ..+.+++.+|||||||.+++..+....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-------------------------------- 50 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-------------------------------- 50 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH--------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc--------------------------------
Confidence 578999999986653 358999999999999999876554432
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEE-----------EEcCCCHHHHHHHhcCCCcEEEE
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVAC-----------VVGGMSTEKQLRILNKCPHILVA 932 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~-----------~~gg~~~~~~~~~l~~~~~IlV~ 932 (1493)
. +++|++|+..|+.|+.+.+..+.......... ..................+++++
T Consensus 51 ----------~---~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 117 (184)
T PF04851_consen 51 ----------R---KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILT 117 (184)
T ss_dssp ----------C---EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEE
T ss_pred ----------c---ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhh
Confidence 1 69999999999999999997665332111111 00001111122233446689999
Q ss_pred CcHHHHHHHHhCcC--------ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 933 TPGRLWEFIQLGHF--------HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 933 TP~rl~~~l~~~~~--------~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
|...+......... ........++||+||||++....- ...++. .....+++||||+.+
T Consensus 118 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~-------~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 118 TYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE-------FKAAFILGLTATPFR 184 (184)
T ss_dssp EHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH-------SSCCEEEEEESS-S-
T ss_pred HHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc-------CCCCeEEEEEeCccC
Confidence 99999887654221 011234578999999999765321 444444 245679999999863
No 284
>COG4889 Predicted helicase [General function prediction only]
Probab=99.34 E-value=4e-12 Score=151.18 Aligned_cols=102 Identities=24% Similarity=0.411 Sum_probs=78.9
Q ss_pred cEEEEecchhhHHHHHHHHHh---------------cCCCccccccCCCHHHHHHHHH---HHhcCCCeEEEEechhhcc
Q psy16310 546 RTLVFCNSISSVKRLTQLLTM---------------LKCSPLPLHASMNQRQRLKNLD---RFRDQNNSILLATDVAARG 607 (1493)
Q Consensus 546 ~~IIF~~s~~~a~~L~~~L~~---------------~~~~~~~lhg~~~~~~R~~vl~---~Fr~g~~~VLVaTdv~~rG 607 (1493)
++|-||.+.++...++..+.. +.+++-...|.|.-.+|...+. .|...+++||-.--.+++|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 678888888888777766632 2344455668899888855443 3566788999888899999
Q ss_pred CCCCCCcEEEEecCCCChHHHHHHHhccccCC--C-CCeEEEE
Q psy16310 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN--N-EGLTVVL 647 (1493)
Q Consensus 608 lDip~v~~VI~yd~P~s~~~yiQR~GRagR~g--~-~G~~i~l 647 (1493)
+|+|..+.||.||+-.+..+.+|.+||+-|-. + -|+.++=
T Consensus 542 VDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILP 584 (1518)
T COG4889 542 VDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILP 584 (1518)
T ss_pred CCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEE
Confidence 99999999999999999999999999999932 2 2665553
No 285
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.31 E-value=1.7e-10 Score=149.93 Aligned_cols=114 Identities=24% Similarity=0.377 Sum_probs=82.4
Q ss_pred hhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCC-ccccccCCCHHHHHHHHHHHhcCCC-CeEEeehhhhccccC
Q psy16310 1066 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS-PLPLHASMNQRQRLKNLDRFRDQNN-SILLATDVAARGLDI 1143 (1493)
Q Consensus 1066 ~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~m~~~~R~~~~~~F~~g~~-~VLVaTdv~~~GiDi 1143 (1493)
...+..++...+++++||++|....+.++..+...... ....+|. ..+...++.|+.+.- .++|+|..+++|||+
T Consensus 468 ~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 468 AAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 33445556667889999999999999999999876553 2234444 344588888987665 999999999999999
Q ss_pred CCc--cEEEEecCCC------------------------------ChhHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1144 PGI--EHVIHYHVPR------------------------------TSEIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1144 p~v--~~VI~~d~p~------------------------------s~~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
|+- .+||...+|- -...+.|.+||+-|.-..--.+++++
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 874 6788877662 12346899999999644333333333
No 286
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.31 E-value=1.5e-11 Score=133.13 Aligned_cols=134 Identities=20% Similarity=0.082 Sum_probs=87.2
Q ss_pred CChHHHHhhhhhhhc------cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 173 TPTKIQSMVMPSALL------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~------~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
+|+++|.+++..++. .++.+++.+|||||||.+++..+....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-------------------------------- 50 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-------------------------------- 50 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH--------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc--------------------------------
Confidence 489999999986553 368999999999999999876554332
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEE-----------EcCCCHHHHHHHhcCCCCEEEe
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV-----------VGGMSTEKQLRILNKCPHILVA 315 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~-----------~G~~~~~~~~~~l~~~~~IiV~ 315 (1493)
. +++|++|+..|+.|....+..+........... .................++++.
T Consensus 51 -----------~--~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 117 (184)
T PF04851_consen 51 -----------R--KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILT 117 (184)
T ss_dssp -----------C--EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEE
T ss_pred -----------c--ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhh
Confidence 1 699999999999999999976654321111110 0011111122233455689999
Q ss_pred CcHHHHHHHHcCCc--------cccccccccEEEEecCchhhhc
Q psy16310 316 TPGRLWEFIQLGHF--------HLTELYKINYLVIDETDRMIES 351 (1493)
Q Consensus 316 TP~~L~~~l~~~~~--------~~~~l~~i~~lViDEAh~ll~~ 351 (1493)
|...|......... .........+||+||||++...
T Consensus 118 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~ 161 (184)
T PF04851_consen 118 TYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSD 161 (184)
T ss_dssp EHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHH
T ss_pred HHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCH
Confidence 99999887653211 1112335789999999998654
No 287
>KOG0392|consensus
Probab=99.30 E-value=9.3e-11 Score=145.20 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=97.1
Q ss_pred cccCchhhHHHHHHhhC-----------------CCcEEEEecchhhHHHHHHHHHh-cCCCc--cccccCCCHHHHHHH
Q psy16310 527 CKHDEKDSYLYYFILQH-----------------PGRTLVFCNSISSVKRLTQLLTM-LKCSP--LPLHASMNQRQRLKN 586 (1493)
Q Consensus 527 ~~~~~k~~~l~~~l~~~-----------------~~~~IIF~~s~~~a~~L~~~L~~-~~~~~--~~lhg~~~~~~R~~v 586 (1493)
...+.|...|.++|..- ++++||||.-+.....+.+-|-. .-.++ ..+.|..++.+|.++
T Consensus 1306 i~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~ki 1385 (1549)
T KOG0392|consen 1306 IQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKI 1385 (1549)
T ss_pred hhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHH
Confidence 45667888888887543 35899999999999988876643 33344 378999999999999
Q ss_pred HHHHhcC-CCeEE-EEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCC
Q psy16310 587 LDRFRDQ-NNSIL-LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641 (1493)
Q Consensus 587 l~~Fr~g-~~~VL-VaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~ 641 (1493)
.++|.++ .+.|| ++|-|.+-|+|+.+.+.||.++--+|+..-+|.+-||-|-|..
T Consensus 1386 V~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQK 1442 (1549)
T KOG0392|consen 1386 VERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQK 1442 (1549)
T ss_pred HHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCc
Confidence 9999998 67765 7888999999999999999999999999999999999999965
No 288
>KOG0384|consensus
Probab=99.30 E-value=2.8e-11 Score=150.60 Aligned_cols=125 Identities=17% Similarity=0.261 Sum_probs=107.0
Q ss_pred cCchhhHHHHHH---hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc---CCCeEEEEec
Q psy16310 529 HDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD---QNNSILLATD 602 (1493)
Q Consensus 529 ~~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~---g~~~VLVaTd 602 (1493)
.+.|.-+|-.+| ...++++|||..-.....-|+.+|...++.+..+.|.+...-|...+++|.. ...-.|+||-
T Consensus 681 sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTR 760 (1373)
T KOG0384|consen 681 SSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTR 760 (1373)
T ss_pred hcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecc
Confidence 344444443333 4457899999999999999999999999999999999999999999999964 4567899999
Q ss_pred hhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC--eEEEEecCCcc
Q psy16310 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESDEI 653 (1493)
Q Consensus 603 v~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G--~~i~l~~~~e~ 653 (1493)
+.+-|||+-..+.||.||--+||+.=+|...||-|.|..- .+|.|++.+-+
T Consensus 761 AGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 761 AGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred cCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 9999999999999999999999999999999999999764 45677777543
No 289
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.28 E-value=1.9e-10 Score=144.43 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=91.2
Q ss_pred CCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHH
Q psy16310 815 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894 (1493)
Q Consensus 815 TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~ 894 (1493)
+|||||.+|+-.+-..+. .+.++|||+|...|+.|+.+
T Consensus 169 ~GSGKTevyl~~i~~~l~------------------------------------------~Gk~vLvLvPEi~lt~q~~~ 206 (665)
T PRK14873 169 PGEDWARRLAAAAAATLR------------------------------------------AGRGALVVVPDQRDVDRLEA 206 (665)
T ss_pred CCCcHHHHHHHHHHHHHH------------------------------------------cCCeEEEEecchhhHHHHHH
Confidence 599999999877765552 34479999999999999999
Q ss_pred HHHHhhCCCCcEEEEEEcCCCHHHHHH----HhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC--
Q psy16310 895 HILDAGKYTPVKVACVVGGMSTEKQLR----ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-- 968 (1493)
Q Consensus 895 ~~~~~~~~~~~~v~~~~gg~~~~~~~~----~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~-- 968 (1493)
.|+..+. +..+..++++.+..+..+ .......|+|||-.-+ +..+.++++||+||-|.-.-.
T Consensus 207 rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~ 274 (665)
T PRK14873 207 ALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEP 274 (665)
T ss_pred HHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCC
Confidence 9988652 256888999887664332 3344579999997654 245778999999999964321
Q ss_pred -C---ChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 969 -G---HFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 969 -~---~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
+ +..++....... .+..+++.|||++-+.
T Consensus 275 ~~p~yhaRdvA~~Ra~~------~~~~lvLgSaTPSles 307 (665)
T PRK14873 275 RAPYPHAREVALLRAHQ------HGCALLIGGHARTAEA 307 (665)
T ss_pred CCCCccHHHHHHHHHHH------cCCcEEEECCCCCHHH
Confidence 1 122333333332 5788999999997443
No 290
>KOG0390|consensus
Probab=99.27 E-value=5e-10 Score=138.29 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=87.5
Q ss_pred hhHHHHHHHhCCCcEEEEec----chhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC---CCeEEeehhhh
Q psy16310 1066 DSYLYYFILQHPGRTLVFCN----SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAA 1138 (1493)
Q Consensus 1066 ~~~l~~~l~~~~~~~IVF~~----s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~---~~VLVaTdv~~ 1138 (1493)
...|..++.....++++|+- -+...+.+....+-.|+.+..+||.|+..+|..+++.|.+-. .-.|.+|-+.+
T Consensus 580 l~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg 659 (776)
T KOG0390|consen 580 LLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGG 659 (776)
T ss_pred HHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEeccccc
Confidence 33444444333344444443 344444455555556999999999999999999999998633 33566777999
Q ss_pred ccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEE
Q psy16310 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180 (1493)
Q Consensus 1139 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l 1180 (1493)
.||++-+.+.||.||+..+++.=.|.++|+=|.|+.-.|+++
T Consensus 660 ~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 660 EGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred CceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999999999999999987766654
No 291
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.26 E-value=3e-10 Score=147.66 Aligned_cols=107 Identities=23% Similarity=0.391 Sum_probs=81.0
Q ss_pred hhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCC-ccccccCCCHHHHHHHHHHHhcCCC-eEEEEechhhccCC
Q psy16310 532 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS-PLPLHASMNQRQRLKNLDRFRDQNN-SILLATDVAARGLD 609 (1493)
Q Consensus 532 k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~-~~~lhg~~~~~~R~~vl~~Fr~g~~-~VLVaTdv~~rGlD 609 (1493)
-...+..++...++++|||++|....+.+...+...... ....+|. ..+...++.|+.+.- .++|+|..+.+|+|
T Consensus 467 ~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD 543 (654)
T COG1199 467 LAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGSFWEGVD 543 (654)
T ss_pred HHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeeccccCccc
Confidence 345566667777889999999999999999999876553 2333444 334478888887665 99999999999999
Q ss_pred CCC--CcEEEEecCC------------------------------CChHHHHHHHhccccCCCC
Q psy16310 610 IPG--IEHVIHYHVP------------------------------RTSEIYIHRSGRTARANNE 641 (1493)
Q Consensus 610 ip~--v~~VI~yd~P------------------------------~s~~~yiQR~GRagR~g~~ 641 (1493)
+|+ +..||...+| .-+....|-+||.=|.-..
T Consensus 544 ~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D 607 (654)
T COG1199 544 FPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD 607 (654)
T ss_pred CCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC
Confidence 987 5778877766 2244557999999995543
No 292
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.26 E-value=1.8e-09 Score=138.61 Aligned_cols=82 Identities=24% Similarity=0.428 Sum_probs=62.0
Q ss_pred HHHHHhhCCCcEEEEecchhhHHHHHHHHHhc-CCCccccccCCCHHHHHHHHHHHh----cCCCeEEEEechhhccCCC
Q psy16310 536 LYYFILQHPGRTLVFCNSISSVKRLTQLLTML-KCSPLPLHASMNQRQRLKNLDRFR----DQNNSILLATDVAARGLDI 610 (1493)
Q Consensus 536 l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~-~~~~~~lhg~~~~~~R~~vl~~Fr----~g~~~VLVaTdv~~rGlDi 610 (1493)
+..++. .++++|||++|+...+.++..|... +.. ...+|. ..+..+++.|+ .|...||++|..+.+|||+
T Consensus 527 i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~ 601 (697)
T PRK11747 527 LPELLE-KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL 601 (697)
T ss_pred HHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccC
Confidence 334444 5667999999999999999988643 332 333553 24667887776 4788899999999999999
Q ss_pred CC--CcEEEEecCC
Q psy16310 611 PG--IEHVIHYHVP 622 (1493)
Q Consensus 611 p~--v~~VI~yd~P 622 (1493)
|+ +++||...+|
T Consensus 602 pGd~l~~vII~kLP 615 (697)
T PRK11747 602 PGDYLTQVIITKIP 615 (697)
T ss_pred CCCceEEEEEEcCC
Confidence 97 7899987766
No 293
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=3e-10 Score=142.06 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=114.6
Q ss_pred hhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCC
Q psy16310 493 CEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKC 569 (1493)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~ 569 (1493)
..+...+...+.-.+..+.....+........++.....|...+...+.. .+.|+||-|.|....+.|+++|...|+
T Consensus 574 ~tea~Ef~~IY~L~Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI 653 (1112)
T PRK12901 574 ETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKI 653 (1112)
T ss_pred HHHHHHHHHHhCCCEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 33444555555555554444444433333444555556677666655543 467999999999999999999999999
Q ss_pred CccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCC---CC-----cEEEEecCCCChHHHHHHHhccccCCCC
Q psy16310 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP---GI-----EHVIHYHVPRTSEIYIHRSGRTARANNE 641 (1493)
Q Consensus 570 ~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip---~v-----~~VI~yd~P~s~~~yiQR~GRagR~g~~ 641 (1493)
+..++++.....+-.-+-++ --...|-|||++|+||-||. +| =+||-...+.|..---|-.||+||-|.+
T Consensus 654 ~H~VLNAK~h~~EAeIVA~A--G~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDP 731 (1112)
T PRK12901 654 PHNVLNAKLHQKEAEIVAEA--GQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDP 731 (1112)
T ss_pred cHHHhhccchhhHHHHHHhc--CCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCC
Confidence 98888887543333222222 22347999999999999996 22 3889999999999999999999999999
Q ss_pred CeEEEEecCCcc
Q psy16310 642 GLTVVLIESDEI 653 (1493)
Q Consensus 642 G~~i~l~~~~e~ 653 (1493)
|.+-.|++-+|-
T Consensus 732 GsS~f~lSLEDd 743 (1112)
T PRK12901 732 GSSQFYVSLEDN 743 (1112)
T ss_pred CcceEEEEcccH
Confidence 999999877663
No 294
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.23 E-value=2.5e-09 Score=125.81 Aligned_cols=306 Identities=20% Similarity=0.228 Sum_probs=199.0
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-Cc----EEEEEEc----C----------CCHHHHHHHhc------
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PV----KVACVVG----G----------MSTEKQLRILN------ 924 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~----~v~~~~g----g----------~~~~~~~~~l~------ 924 (1493)
....-..+++|||+|+|.-|.++.+.+..+.... .+ +...-+| + ......+..+-
T Consensus 31 RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD 110 (442)
T PF06862_consen 31 RDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDD 110 (442)
T ss_pred hccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccc
Confidence 3445667899999999999999999987765331 00 0000011 0 00011111111
Q ss_pred -------------------CCCcEEEECcHHHHHHHHh---CcCccccccceeEEEecccchhccCCChhHHHHHHHHhc
Q psy16310 925 -------------------KCPHILVATPGRLWEFIQL---GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 982 (1493)
Q Consensus 925 -------------------~~~~IlV~TP~rl~~~l~~---~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~ 982 (1493)
...|||||+|=-|...+.. .......|+.+.++|+|-||.|+- .-+..+..+++.+.
T Consensus 111 ~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M-QNW~Hv~~v~~~lN 189 (442)
T PF06862_consen 111 CFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM-QNWEHVLHVFEHLN 189 (442)
T ss_pred eEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH-hhHHHHHHHHHHhc
Confidence 1359999999998877764 334455688999999999997654 34467777777776
Q ss_pred ccCC-------------------CCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEec
Q psy16310 983 MTET-------------------SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 1043 (1493)
Q Consensus 983 ~~~~-------------------~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1043 (1493)
..+. ..-||+++||+...+.+...+............ +..+... .
T Consensus 190 ~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~---------------~~~~~~~-~ 253 (442)
T PF06862_consen 190 LQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVR---------------LKPPYEA-S 253 (442)
T ss_pred cCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEE---------------Eeecccc-c
Confidence 5322 123899999999998877665432111111000 0000000 0
Q ss_pred cccccccccceeeEEE--ec-----ccchhhHHHHHH----H--hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccC
Q psy16310 1044 TEKIGITKTLTESKIL--CK-----HDEKDSYLYYFI----L--QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110 (1493)
Q Consensus 1044 ~~~~~~~~~~~~~~~~--~~-----~~~k~~~l~~~l----~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~ 1110 (1493)
.........+.+.+.. |. .+.+..+....+ . ...+.+|||++|--.--+|..+|+..++....+|--
T Consensus 254 g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EY 333 (442)
T PF06862_consen 254 GVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEY 333 (442)
T ss_pred eeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEeccc
Confidence 0001122233333322 11 223333333211 1 234789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEeehhh--hccccCCCccEEEEecCCCChhHHHHHHhccCCCC------CCCeEEEEec
Q psy16310 1111 MNQRQRLKNLDRFRDQNNSILLATDVA--ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN------NEGLTLVLIE 1182 (1493)
Q Consensus 1111 m~~~~R~~~~~~F~~g~~~VLVaTdv~--~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g------~~G~~i~l~~ 1182 (1493)
.++.+-.+.-..|..|+..||+.|.=+ =+-..|.++.+||.|.+|..+.-|-..++-.+... ..+.|.++++
T Consensus 334 ts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lys 413 (442)
T PF06862_consen 334 TSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYS 413 (442)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEec
Confidence 999998999999999999999999843 46688999999999999999988877775544433 2578999998
Q ss_pred CCCHHHHHHH
Q psy16310 1183 SDEIPLYIKM 1192 (1493)
Q Consensus 1183 ~~e~~~~~~~ 1192 (1493)
..|...+.++
T Consensus 414 k~D~~~LErI 423 (442)
T PF06862_consen 414 KYDALRLERI 423 (442)
T ss_pred HhHHHHHHHH
Confidence 8887766655
No 295
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.22 E-value=2.6e-10 Score=143.37 Aligned_cols=91 Identities=26% Similarity=0.246 Sum_probs=69.1
Q ss_pred EEEEecchhhHHHHHHHHHhc------CCCccccccCCCHHHHHHHHHHH----------------------hc----CC
Q psy16310 547 TLVFCNSISSVKRLTQLLTML------KCSPLPLHASMNQRQRLKNLDRF----------------------RD----QN 594 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~------~~~~~~lhg~~~~~~R~~vl~~F----------------------r~----g~ 594 (1493)
++|-+.+...+..++..|-.. .+.+++||+..+...|..+.+.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 477778888888888777543 34577899988777776555432 12 46
Q ss_pred CeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCC
Q psy16310 595 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 640 (1493)
Q Consensus 595 ~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~ 640 (1493)
..|+|+|.|.+-|+|+ +.+++|. -|.++.+.|||+||+-|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 7899999999999999 6777754 46789999999999999874
No 296
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=4.5e-09 Score=131.83 Aligned_cols=123 Identities=22% Similarity=0.253 Sum_probs=95.7
Q ss_pred cccchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhh
Q psy16310 1061 KHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137 (1493)
Q Consensus 1061 ~~~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~ 1137 (1493)
....|..+++..+. ..+.|+||-+.|+...+.|+..|...|++..++++.....+-.-+-+ ....-.|-|||++|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~--AG~~GaVTIATNMA 686 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE--AGQPGTVTIATNMA 686 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh--cCCCCcEEEeccCc
Confidence 33455555555443 34789999999999999999999999999888888644333322222 22345699999999
Q ss_pred hccccCC--------CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1138 ARGLDIP--------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1138 ~~GiDip--------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
+||-||. +=-|||--..|.|..---|-.||+||-|.+|.+..|++-.|
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9999996 33578888889999999999999999999999999987654
No 297
>KOG2340|consensus
Probab=99.16 E-value=1.3e-09 Score=124.48 Aligned_cols=369 Identities=20% Similarity=0.252 Sum_probs=223.1
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCC---cc--hhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHH--
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGS---GK--TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE-- 861 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGs---GK--Tla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 861 (1493)
..+|+.|.+.+. +....+|++. ||+| |+ +-+|++.++++++..+. .++++.+.
T Consensus 215 ~pltalQ~~L~~-~m~~YrDl~y--~~~s~kn~~e~R~lYclH~lNHi~K~r~-----------------~IL~Nn~r~~ 274 (698)
T KOG2340|consen 215 EPLTALQKELFK-IMFNYRDLLY--PTRSQKNGEEYRSLYCLHALNHILKTRD-----------------LILGNNRRLA 274 (698)
T ss_pred CcchHHHHHHHH-HHHhhhhhcc--ccccccccchhhhhHHHHHHHHHHHHHH-----------------HHhcchHhhh
Confidence 467999999996 5667789874 4544 44 56789999999986431 11111111
Q ss_pred ---hh-hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCc-EE--------EEEEcC---------------
Q psy16310 862 ---ES-ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV-KV--------ACVVGG--------------- 913 (1493)
Q Consensus 862 ---~~-~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~-~v--------~~~~gg--------------- 913 (1493)
.+ .....+....-..++||||||||+-|..+.+.+..++.+..- +. .--++|
T Consensus 275 Sqk~g~~~~~~frDQG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~ 354 (698)
T KOG2340|consen 275 SQKEGENPDESFRDQGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDF 354 (698)
T ss_pred hhhcCCCCchhhhhcCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhH
Confidence 00 122334455667789999999999999999999887544321 00 011121
Q ss_pred -------CCHH---------HHHHHh--cCCCcEEEECcHHHHHHHH---hCcCccccccceeEEEecccchhccCCChh
Q psy16310 914 -------MSTE---------KQLRIL--NKCPHILVATPGRLWEFIQ---LGHFHLTELYKINYLVIDETDRMIESGHFP 972 (1493)
Q Consensus 914 -------~~~~---------~~~~~l--~~~~~IlV~TP~rl~~~l~---~~~~~~~~l~~l~~lVlDEah~ll~~~~~~ 972 (1493)
.... +-.... ....||+||+|--|..++. .....+..++.+.++|||-||.|+...+ .
T Consensus 355 ~~lf~GNtDD~FriGl~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-E 433 (698)
T KOG2340|consen 355 EELFSGNTDDAFRIGLAFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-E 433 (698)
T ss_pred HHHhcCCCcchhhhhHHHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-H
Confidence 1100 000000 1245999999988877775 2233445577899999999998876544 6
Q ss_pred HHHHHHHHhcccCCC-------------------CCceEEEEecccccchHhHHhhhccCcC----cccccCCCchhHHH
Q psy16310 973 ELKNILDRVTMTETS-------------------QPRQTFVFSATLTHSLKNSLNLKKGQSK----SKKVSKGDPSIKRL 1029 (1493)
Q Consensus 973 ~l~~il~~l~~~~~~-------------------~~~q~ll~SATl~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l 1029 (1493)
.+..|+..|...+.. --+|+++||+-........+........ ...+.... .+..+
T Consensus 434 hl~~ifdHLn~~P~k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~g-si~~v 512 (698)
T KOG2340|consen 434 HLLHIFDHLNLQPSKQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGG-SISNV 512 (698)
T ss_pred HHHHHHHHhhcCcccccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCC-chhhc
Confidence 777888887643221 1268888888765544443322211110 00000000 00000
Q ss_pred HhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh-C----CCcEEEEecchhhHHHHHHHHHhcCCCc
Q psy16310 1030 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-H----PGRTLVFCNSISSVKRLTQLLTMLKCSP 1104 (1493)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~----~~~~IVF~~s~~~~~~l~~~L~~~~~~~ 1104 (1493)
.+ .+. .....+....+....+.+..+....+.. . ..-+|||.++--.-.++..+++...+..
T Consensus 513 ----~~------~l~---Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F 579 (698)
T KOG2340|consen 513 ----GI------PLC---QVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISF 579 (698)
T ss_pred ----cc------hhh---hhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcch
Confidence 00 000 0000011111122233444444433322 1 2357999999999999999999888777
Q ss_pred cccccCCCHHHHHHHHHHHhcCCCCeEEeehhh--hccccCCCccEEEEecCCCChhHH---HHHHhccCCCC----CCC
Q psy16310 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVA--ARGLDIPGIEHVIHYHVPRTSEIY---IHRSGRTARAN----NEG 1175 (1493)
Q Consensus 1105 ~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~--~~GiDip~v~~VI~~d~p~s~~~y---iqr~GR~gR~g----~~G 1175 (1493)
..+|--.++.+-.+.-+.|-.|...||+-|.-+ -|-.+|.+|..||.|.+|.++.-| +.+.||+.--| ..-
T Consensus 580 ~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~ 659 (698)
T KOG2340|consen 580 VMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIF 659 (698)
T ss_pred HHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccce
Confidence 777765566666667778999999999999854 477899999999999999987655 67778875443 245
Q ss_pred eEEEEecCCCHHHHHHH
Q psy16310 1176 LTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1176 ~~i~l~~~~e~~~~~~~ 1192 (1493)
.|.++++..|.-.+..+
T Consensus 660 t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 660 TVRILYTKYDRIRLENI 676 (698)
T ss_pred EEEEEeechhhHHHHHh
Confidence 67778877766555443
No 298
>KOG0384|consensus
Probab=99.15 E-value=5.1e-10 Score=139.64 Aligned_cols=110 Identities=17% Similarity=0.290 Sum_probs=99.6
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc---CCCCeEEeehhhhccccCCCccEEEEe
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD---QNNSILLATDVAARGLDIPGIEHVIHY 1152 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~---g~~~VLVaTdv~~~GiDip~v~~VI~~ 1152 (1493)
.+.+||||..=+...+-|+++|...+++.--+-|.+....|...++.|.. ...-.|+||-+.+-|||+-..++||.|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 36799999999999999999999999999999999999999999999985 456689999999999999999999999
Q ss_pred cCCCChhHHHHHHhccCCCCCCCe--EEEEecCCC
Q psy16310 1153 HVPRTSEIYIHRSGRTARANNEGL--TLVLIESDE 1185 (1493)
Q Consensus 1153 d~p~s~~~yiqr~GR~gR~g~~G~--~i~l~~~~e 1185 (1493)
|--.++..=+|..-||-|-|+.-. .|-||+.+-
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 999999999999999999998664 455677653
No 299
>KOG1000|consensus
Probab=99.13 E-value=2.2e-09 Score=121.71 Aligned_cols=337 Identities=15% Similarity=0.149 Sum_probs=201.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHH
Q psy16310 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854 (1493)
Q Consensus 775 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 854 (1493)
+++.|...| .|+|.+.+..+|..|..+++.-..|-|||+-++.-+- .+..
T Consensus 191 ~d~kLvs~L--------lPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~--yyra-------------------- 240 (689)
T KOG1000|consen 191 MDPKLVSRL--------LPFQREGVIFALERGGRILLADEMGLGKTIQALAIAR--YYRA-------------------- 240 (689)
T ss_pred cCHHHHHhh--------CchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHH--HHhh--------------------
Confidence 467777766 6999999998999888999999999999987543222 2111
Q ss_pred HHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECc
Q psy16310 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 934 (1493)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP 934 (1493)
..-.||+||.. |-.-+.+.+.+++.. -..+.++.++...-.. +-....|.|.+-
T Consensus 241 ---------------------EwplliVcPAs-vrftWa~al~r~lps-~~pi~vv~~~~D~~~~---~~t~~~v~ivSy 294 (689)
T KOG1000|consen 241 ---------------------EWPLLIVCPAS-VRFTWAKALNRFLPS-IHPIFVVDKSSDPLPD---VCTSNTVAIVSY 294 (689)
T ss_pred ---------------------cCcEEEEecHH-HhHHHHHHHHHhccc-ccceEEEecccCCccc---cccCCeEEEEEH
Confidence 11378999975 445677888776532 2335556665432211 112246888888
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh----HHhh-
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN----SLNL- 1009 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~----~~~~- 1009 (1493)
+.+..+-. . ..-...+++|+||+|.+-+ +.......++..+. .-..++++|.|+.-+-.. .+..
T Consensus 295 e~ls~l~~--~---l~~~~~~vvI~DEsH~Lk~-sktkr~Ka~~dllk-----~akhvILLSGTPavSRP~elytqi~av 363 (689)
T KOG1000|consen 295 EQLSLLHD--I---LKKEKYRVVIFDESHMLKD-SKTKRTKAATDLLK-----VAKHVILLSGTPAVSRPSELYTQIRAV 363 (689)
T ss_pred HHHHHHHH--H---HhcccceEEEEechhhhhc-cchhhhhhhhhHHH-----HhhheEEecCCcccCCchhhhhhhhhh
Confidence 77643321 1 0112478999999996543 33344555555442 335789999997622111 1100
Q ss_pred -------------hccCcCccc---ccCCCchhH-------------HHHhH----hccCCCcEEeccccc--cccccc-
Q psy16310 1010 -------------KKGQSKSKK---VSKGDPSIK-------------RLQDL----LNIKSPKIVDLTEKI--GITKTL- 1053 (1493)
Q Consensus 1010 -------------~~~~~~~~~---~~~~~~~~~-------------~l~~~----~~~~~~~~~~~~~~~--~~~~~~- 1053 (1493)
......... -..+..+.. ++... +.-+...++.+.... .....+
T Consensus 364 d~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv 443 (689)
T KOG1000|consen 364 DHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLV 443 (689)
T ss_pred cccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHH
Confidence 000000000 000111111 11111 111111111111000 000000
Q ss_pred eee--EEEe----------------cccchhhHHHHHHHh-------CCCcEEEEecchhhHHHHHHHHHhcCCCccccc
Q psy16310 1054 TES--KILC----------------KHDEKDSYLYYFILQ-------HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108 (1493)
Q Consensus 1054 ~~~--~~~~----------------~~~~k~~~l~~~l~~-------~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lh 1108 (1493)
... +... ....|...+..++.. .+.+.+|||.-....+.+...+...+++..-+.
T Consensus 444 ~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRID 523 (689)
T KOG1000|consen 444 KAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRID 523 (689)
T ss_pred HHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEec
Confidence 000 0000 011223333333333 256899999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhcCC-CCe-EEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEE
Q psy16310 1109 ASMNQRQRLKNLDRFRDQN-NSI-LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178 (1493)
Q Consensus 1109 g~m~~~~R~~~~~~F~~g~-~~V-LVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i 1178 (1493)
|..+...|....+.|...+ +.| +++-.+++.|+++...+.||...++.++.-++|.--|+-|.|+...+.
T Consensus 524 Gst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~ 595 (689)
T KOG1000|consen 524 GSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVF 595 (689)
T ss_pred CCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceee
Confidence 9999999999999998654 444 456678899999999999999999999999999889998888765433
No 300
>KOG1000|consensus
Probab=99.11 E-value=1.9e-09 Score=122.21 Aligned_cols=124 Identities=15% Similarity=0.259 Sum_probs=98.0
Q ss_pred chhhHHHHHHhhC-------CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCeE-EEEe
Q psy16310 531 EKDSYLYYFILQH-------PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSI-LLAT 601 (1493)
Q Consensus 531 ~k~~~l~~~l~~~-------~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g-~~~V-LVaT 601 (1493)
.|...+.+++..+ +.+.+|||+-....+.+...+...+++...+.|..+...|....+.|... ++.| +++-
T Consensus 472 aK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsI 551 (689)
T KOG1000|consen 472 AKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSI 551 (689)
T ss_pred cccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEE
Confidence 3455555555442 46899999999999999999999999999999999999999999999865 3444 4555
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCe--EEEEecCCcch
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL--TVVLIESDEIP 654 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~--~i~l~~~~e~~ 654 (1493)
..++.||++...+.||...++.|+.-.+|.--|+-|.|...- ++.|+..+-.+
T Consensus 552 tA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~D 606 (689)
T KOG1000|consen 552 TAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTAD 606 (689)
T ss_pred eecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchH
Confidence 677899999999999999999999888888888888776533 33344444433
No 301
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=1.3e-08 Score=132.26 Aligned_cols=84 Identities=18% Similarity=0.272 Sum_probs=62.3
Q ss_pred HHhCCCcEEEEecchhhHHHHHHHHHhcCCC------ccccccCCCHHHHHHHHHHHhc----CCCCeEEee--hhhhcc
Q psy16310 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCS------PLPLHASMNQRQRLKNLDRFRD----QNNSILLAT--DVAARG 1140 (1493)
Q Consensus 1073 l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~------~~~lhg~m~~~~R~~~~~~F~~----g~~~VLVaT--dv~~~G 1140 (1493)
+...++.+|||++|-...+.++..+...|.- -.++.-.-...++..+++.|+. |.-.||+|+ ..+++|
T Consensus 518 ~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEG 597 (705)
T TIGR00604 518 SKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEG 597 (705)
T ss_pred hhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCc
Confidence 3445899999999999999999888754320 1112111112577889999975 466799999 899999
Q ss_pred ccCCC--ccEEEEecCCC
Q psy16310 1141 LDIPG--IEHVIHYHVPR 1156 (1493)
Q Consensus 1141 iDip~--v~~VI~~d~p~ 1156 (1493)
||+++ .+.||..++|-
T Consensus 598 IDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 598 IDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred cccCCCCCcEEEEEccCC
Confidence 99987 68899998884
No 302
>KOG0389|consensus
Probab=99.10 E-value=1.8e-09 Score=129.10 Aligned_cols=125 Identities=20% Similarity=0.201 Sum_probs=106.0
Q ss_pred CchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC--CeEEEEechh
Q psy16310 530 DEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN--NSILLATDVA 604 (1493)
Q Consensus 530 ~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~--~~VLVaTdv~ 604 (1493)
+.|...|..+|.. .+.++|||..-.....-|-.+|..+++....+.|...-..|..++..|-..+ .-+|++|-..
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 4566666666643 4689999999988899999999999999999999999999999999997654 3468999999
Q ss_pred hccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCC--CeEEEEecCCcch
Q psy16310 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE--GLTVVLIESDEIP 654 (1493)
Q Consensus 605 ~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~e~~ 654 (1493)
+-|||+-..++||.||+..||-.-.|.--|+-|.|.. -+++.|++.+-+.
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 9999999999999999999998888888888888764 5677788776543
No 303
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=2.7e-08 Score=129.28 Aligned_cols=115 Identities=19% Similarity=0.294 Sum_probs=80.5
Q ss_pred HHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCC------CccccccCCCHHHHHHHHHHHhc----CCCeEEEEe--c
Q psy16310 535 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC------SPLPLHASMNQRQRLKNLDRFRD----QNNSILLAT--D 602 (1493)
Q Consensus 535 ~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~------~~~~lhg~~~~~~R~~vl~~Fr~----g~~~VLVaT--d 602 (1493)
.+..++...++++|||++|+...+.+...+...+. ....+...-...++..+++.|+. |...||+|+ .
T Consensus 513 ~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gG 592 (705)
T TIGR00604 513 LLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGG 592 (705)
T ss_pred HHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 34455556689999999999999999888865432 11122222222577889999965 566799999 8
Q ss_pred hhhccCCCCC--CcEEEEecCCC-Ch------------------------------HHHHHHHhccccCCCCCeEEEEec
Q psy16310 603 VAARGLDIPG--IEHVIHYHVPR-TS------------------------------EIYIHRSGRTARANNEGLTVVLIE 649 (1493)
Q Consensus 603 v~~rGlDip~--v~~VI~yd~P~-s~------------------------------~~yiQR~GRagR~g~~G~~i~l~~ 649 (1493)
.+++|||+++ ++.||..++|. ++ ....|-+||+=|....=-+++|++
T Consensus 593 k~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD 672 (705)
T TIGR00604 593 KVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLD 672 (705)
T ss_pred cccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 8999999987 78999999884 21 122588999999775522344443
No 304
>KOG0392|consensus
Probab=99.02 E-value=1.4e-08 Score=126.53 Aligned_cols=107 Identities=23% Similarity=0.324 Sum_probs=89.7
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCC-cc--ccccCCCHHHHHHHHHHHhcC-CCCeEE-eehhhhccccCCCccEEEEe
Q psy16310 1078 GRTLVFCNSISSVKRLTQLLTMLKCS-PL--PLHASMNQRQRLKNLDRFRDQ-NNSILL-ATDVAARGLDIPGIEHVIHY 1152 (1493)
Q Consensus 1078 ~~~IVF~~s~~~~~~l~~~L~~~~~~-~~--~lhg~m~~~~R~~~~~~F~~g-~~~VLV-aTdv~~~GiDip~v~~VI~~ 1152 (1493)
.++||||.-+...+.+...|-....+ +. .+-|..++.+|.++.++|.++ .++||+ +|-|.+-|+|+.+.++||.+
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFv 1420 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFV 1420 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEE
Confidence 48999999999999999888665433 33 478999999999999999998 788765 67799999999999999999
Q ss_pred cCCCChhHHHHHHhccCCCCCCCeEEE--EecCC
Q psy16310 1153 HVPRTSEIYIHRSGRTARANNEGLTLV--LIESD 1184 (1493)
Q Consensus 1153 d~p~s~~~yiqr~GR~gR~g~~G~~i~--l~~~~ 1184 (1493)
+--+++-.=+|.+-||-|-|++-.+-+ |++.+
T Consensus 1421 EHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1421 EHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred ecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 998998888999999999997665443 44443
No 305
>KOG0389|consensus
Probab=99.02 E-value=4.4e-09 Score=125.92 Aligned_cols=124 Identities=20% Similarity=0.213 Sum_probs=102.6
Q ss_pred cchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC--CCeEEeehhh
Q psy16310 1063 DEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN--NSILLATDVA 1137 (1493)
Q Consensus 1063 ~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~--~~VLVaTdv~ 1137 (1493)
..|...|-.+|. ..+.+++||..-....+-|-..|..+++...-+-|...-..|..+++.|...+ .-.|++|-+.
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 345555555543 44789999999999999999999999999999999999999999999998755 3468899999
Q ss_pred hccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCC--eEEEEecCCCH
Q psy16310 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTLVLIESDEI 1186 (1493)
Q Consensus 1138 ~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G--~~i~l~~~~e~ 1186 (1493)
+-|||+-..++||.||+..++-.=.|.--||-|.|+.- ..+-|++.+-+
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 99999999999999999988888888888888888754 44456655543
No 306
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.02 E-value=9.4e-09 Score=129.43 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=59.4
Q ss_pred ceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHH---HH-HhcCCCCEEEeCcHHHHHHHHcCCcccccc
Q psy16310 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ---LR-ILNKCPHILVATPGRLWEFIQLGHFHLTEL 334 (1493)
Q Consensus 259 ~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~---~~-~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l 334 (1493)
+..+|||+|...|..|+.+.|...+. +-.+..++++.+..+. |. ...+.+.|+|+|-..+ +..+
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv----------FaP~ 255 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV----------FAPV 255 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE----------Eecc
Confidence 45699999999999999999988653 2567888888776543 22 3344579999998766 2246
Q ss_pred ccccEEEEecCchh
Q psy16310 335 YKINYLVIDETDRM 348 (1493)
Q Consensus 335 ~~i~~lViDEAh~l 348 (1493)
.++.+|||||-|.-
T Consensus 256 ~~LgLIIvdEEhd~ 269 (665)
T PRK14873 256 EDLGLVAIWDDGDD 269 (665)
T ss_pred CCCCEEEEEcCCch
Confidence 68999999999953
No 307
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.83 E-value=1e-07 Score=117.82 Aligned_cols=310 Identities=14% Similarity=0.169 Sum_probs=173.4
Q ss_pred CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccH
Q psy16310 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTr 886 (1493)
.-.++.||.|||||.+...++-+.+ ..+..++|+|+..+
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l-----------------------------------------~~~~~~VLvVShRr 88 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDAL-----------------------------------------KNPDKSVLVVSHRR 88 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhc-----------------------------------------cCCCCeEEEEEhHH
Confidence 3568899999999987554443222 12345799999999
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhc
Q psy16310 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966 (1493)
Q Consensus 887 eLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll 966 (1493)
.|+.+....|+..+- .++....-.++.... ....+-++++.+.|..+-. ..+.+.++|||||+-..+
T Consensus 89 SL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i~------~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL 155 (824)
T PF02399_consen 89 SLTKSLAERFKKAGL-SGFVNYLDSDDYIID------GRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVL 155 (824)
T ss_pred HHHHHHHHHHhhcCC-Ccceeeecccccccc------ccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHH
Confidence 999999999987531 122222111111110 1124667777777754432 235568999999999876
Q ss_pred cCCChhH------HHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCC---------------Cch
Q psy16310 967 ESGHFPE------LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG---------------DPS 1025 (1493)
Q Consensus 967 ~~~~~~~------l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 1025 (1493)
..-|.+. ...++..+. .....++++-||+.....+++....+......+... ...
T Consensus 156 ~qL~S~Tm~~~~~v~~~L~~lI----~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~ 231 (824)
T PF02399_consen 156 NQLFSPTMRQREEVDNLLKELI----RNAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLG 231 (824)
T ss_pred HHHhHHHHhhHHHHHHHHHHHH----HhCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccC
Confidence 6533222 222233322 234578999999998888877554433222221111 001
Q ss_pred hHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHH--HhCCCcEEEEecchhhHHHHHHHHHhcCCC
Q psy16310 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI--LQHPGRTLVFCNSISSVKRLTQLLTMLKCS 1103 (1493)
Q Consensus 1026 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l--~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~ 1103 (1493)
...+...+..... ..................... .+.......+. ...+.++-||+.|...++.++......+..
T Consensus 232 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~ 308 (824)
T PF02399_consen 232 TDTLAAALNPEDE-NADTSPTPKHSPDPTATAAIS--NDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKK 308 (824)
T ss_pred cHHHHHHhCCccc-ccccCCCcCCCCccccccccc--cchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCe
Confidence 1111111110000 000000000000000001111 11222222222 234667778999999999999999988888
Q ss_pred ccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCc--cEEEEe--cCC--CChhHHHHHHhccCCCCCCCeE
Q psy16310 1104 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI--EHVIHY--HVP--RTSEIYIHRSGRTARANNEGLT 1177 (1493)
Q Consensus 1104 ~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v--~~VI~~--d~p--~s~~~yiqr~GR~gR~g~~G~~ 1177 (1493)
+..++|.-+..+ + +. -++.+|++-|+++..|+++... +-|.-| ... .+..+..|++||+-.-. ....
T Consensus 309 Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei 381 (824)
T PF02399_consen 309 VLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEI 381 (824)
T ss_pred EEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeE
Confidence 988888765552 2 22 4679999999999999999643 334444 222 34556899999975543 4455
Q ss_pred EEEecCC
Q psy16310 1178 LVLIESD 1184 (1493)
Q Consensus 1178 i~l~~~~ 1184 (1493)
++.++..
T Consensus 382 ~v~~d~~ 388 (824)
T PF02399_consen 382 YVYIDAS 388 (824)
T ss_pred EEEEecc
Confidence 5555443
No 308
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.74 E-value=4.4e-08 Score=96.13 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=78.3
Q ss_pred cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcc
Q psy16310 805 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 884 (1493)
.|+-.++-..+|+|||--.+--++...+ ..+.++|||.|
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i-----------------------------------------~~~~rvLvL~P 41 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI-----------------------------------------KRRLRVLVLAP 41 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH-----------------------------------------HTT--EEEEES
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH-----------------------------------------HccCeEEEecc
Confidence 4555688899999999864433443222 34568999999
Q ss_pred cHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccch
Q psy16310 885 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964 (1493)
Q Consensus 885 TreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ 964 (1493)
||.++..+++.++.. ++++.....+. ....+.-|-|+|.+.+...+..+. .+.+++++|+||||.
T Consensus 42 TRvva~em~~aL~~~----~~~~~t~~~~~-------~~~g~~~i~vMc~at~~~~~~~p~----~~~~yd~II~DEcH~ 106 (148)
T PF07652_consen 42 TRVVAEEMYEALKGL----PVRFHTNARMR-------THFGSSIIDVMCHATYGHFLLNPC----RLKNYDVIIMDECHF 106 (148)
T ss_dssp SHHHHHHHHHHTTTS----SEEEESTTSS-----------SSSSEEEEEHHHHHHHHHTSS----CTTS-SEEEECTTT-
T ss_pred cHHHHHHHHHHHhcC----CcccCceeeec-------cccCCCcccccccHHHHHHhcCcc----cccCccEEEEecccc
Confidence 999999988887543 34433211110 112344688999999888876532 356789999999996
Q ss_pred hccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 965 ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
. |..-. .....+..+.. .....++++|||+|...
T Consensus 107 ~-Dp~sI-A~rg~l~~~~~---~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 107 T-DPTSI-AARGYLRELAE---SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp --SHHHH-HHHHHHHHHHH---TTS-EEEEEESS-TT--
T ss_pred C-CHHHH-hhheeHHHhhh---ccCeeEEEEeCCCCCCC
Confidence 3 21111 11122222211 23357899999999543
No 309
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.73 E-value=5.8e-07 Score=111.24 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=76.1
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCC--CcEEEEec
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG--IEHVIHYH 620 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~--v~~VI~yd 620 (1493)
.+..+-||+.|..-++.+++........+..++|.-+..+- +. -++.+|++.|.+..-|+++-. .+-|..|=
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yv 354 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYV 354 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceEEEEEe
Confidence 35677789999999999999998888899989887655522 11 477899999999999999854 44555552
Q ss_pred CC----CChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 621 VP----RTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 621 ~P----~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
-| .+..+..|++||+ |.=.....++.+....
T Consensus 355 k~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~~ 389 (824)
T PF02399_consen 355 KPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDASG 389 (824)
T ss_pred cCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEeccc
Confidence 23 4566789999994 5444566677766543
No 310
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.73 E-value=5.2e-08 Score=95.62 Aligned_cols=105 Identities=21% Similarity=0.193 Sum_probs=65.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcc
Q psy16310 188 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~P 267 (1493)
.|+-.++-..+|+|||.-.+--++..-+ .++.++|||.|
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i-----------------------------------------~~~~rvLvL~P 41 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI-----------------------------------------KRRLRVLVLAP 41 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH-----------------------------------------HTT--EEEEES
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH-----------------------------------------HccCeEEEecc
Confidence 3555678999999999974333433222 35578999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCch
Q psy16310 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347 (1493)
Q Consensus 268 TreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ 347 (1493)
||.++..+.+.++.. ++++.....+. ....+.-|-|+|.+.+...+.+. .. +.+++++|+||||.
T Consensus 42 TRvva~em~~aL~~~----~~~~~t~~~~~-------~~~g~~~i~vMc~at~~~~~~~p-~~---~~~yd~II~DEcH~ 106 (148)
T PF07652_consen 42 TRVVAEEMYEALKGL----PVRFHTNARMR-------THFGSSIIDVMCHATYGHFLLNP-CR---LKNYDVIIMDECHF 106 (148)
T ss_dssp SHHHHHHHHHHTTTS----SEEEESTTSS-----------SSSSEEEEEHHHHHHHHHTS-SC---TTS-SEEEECTTT-
T ss_pred cHHHHHHHHHHHhcC----CcccCceeeec-------cccCCCcccccccHHHHHHhcCc-cc---ccCccEEEEecccc
Confidence 999999988887543 34433111110 11234478899999988877653 22 45799999999996
Q ss_pred h
Q psy16310 348 M 348 (1493)
Q Consensus 348 l 348 (1493)
+
T Consensus 107 ~ 107 (148)
T PF07652_consen 107 T 107 (148)
T ss_dssp -
T ss_pred C
Confidence 4
No 311
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.73 E-value=8.7e-08 Score=110.11 Aligned_cols=44 Identities=32% Similarity=0.232 Sum_probs=36.5
Q ss_pred CCcHHHHhhHHH---hhccCCcEEEEccCCCcchhHhhHHHHHHHhh
Q psy16310 790 TPTKIQSMVMPS---ALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833 (1493)
Q Consensus 790 ~pt~iQ~~~i~~---~l~~~~dvlv~apTGsGKTla~~lpil~~l~~ 833 (1493)
.|+|.|.+.+.. .+..|.++++.||||+|||+++++|++..+..
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 469999995442 45678899999999999999999999877653
No 312
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.73 E-value=8.7e-08 Score=110.11 Aligned_cols=44 Identities=32% Similarity=0.232 Sum_probs=36.5
Q ss_pred CCcHHHHhhHHH---hhccCCcEEEEccCCCcchhHhhHHHHHHHhh
Q psy16310 790 TPTKIQSMVMPS---ALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833 (1493)
Q Consensus 790 ~pt~iQ~~~i~~---~l~~~~dvlv~apTGsGKTla~~lpil~~l~~ 833 (1493)
.|+|.|.+.+.. .+..|.++++.||||+|||+++++|++..+..
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 469999995442 45678899999999999999999999877653
No 313
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.72 E-value=1e-07 Score=109.46 Aligned_cols=46 Identities=30% Similarity=0.254 Sum_probs=37.2
Q ss_pred CCCCChHHHHhhhh---hhhccCCcEEEEccCCCchhHHHHHHHHHHHHh
Q psy16310 170 GFKTPTKIQSMVMP---SALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~---~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~ 216 (1493)
.|. |+|.|.+.+. ..+..|.++++.||||+|||++|++|++..+..
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 343 6999998443 255678899999999999999999999977654
No 314
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.72 E-value=1e-07 Score=109.46 Aligned_cols=46 Identities=30% Similarity=0.254 Sum_probs=37.2
Q ss_pred CCCCChHHHHhhhh---hhhccCCcEEEEccCCCchhHHHHHHHHHHHHh
Q psy16310 170 GFKTPTKIQSMVMP---SALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~---~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~ 216 (1493)
.|. |+|.|.+.+. ..+..|.++++.||||+|||++|++|++..+..
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 343 6999998443 255678899999999999999999999977654
No 315
>KOG0386|consensus
Probab=98.62 E-value=9.1e-07 Score=109.24 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=95.5
Q ss_pred HhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC---CeEEeehhhhccccCCCccEEE
Q psy16310 1074 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVI 1150 (1493)
Q Consensus 1074 ~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~---~VLVaTdv~~~GiDip~v~~VI 1150 (1493)
...+++++.||.-.....-+..+|.-.++.-..+-|.....+|-..++.|..-.. ..|.+|-..+.|+|+...+.||
T Consensus 723 katgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvi 802 (1157)
T KOG0386|consen 723 KATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVI 802 (1157)
T ss_pred HhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEE
Confidence 3458899999999888888999998888888889999999999999999986433 4688999999999999999999
Q ss_pred EecCCCChhHHHHHHhccCCCCCCCeEEEEe
Q psy16310 1151 HYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181 (1493)
Q Consensus 1151 ~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~ 1181 (1493)
.||.-+++..+.|+--|+-|.|..-.+-++.
T Consensus 803 ifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 803 IFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred EecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9999999999999999999999876666654
No 316
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.62 E-value=7.2e-08 Score=113.26 Aligned_cols=151 Identities=18% Similarity=0.148 Sum_probs=84.6
Q ss_pred CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEccc
Q psy16310 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PT 885 (1493)
.+.++++-++|+|||+..+..+. .+.... .......+|||||.
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~-~l~~~~------------------------------------~~~~~~~~LIv~P~ 67 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALIS-YLKNEF------------------------------------PQRGEKKTLIVVPS 67 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHH-HHHHCC------------------------------------TTSS-S-EEEEE-T
T ss_pred CCCEEEEECCCCCchhhhhhhhh-hhhhcc------------------------------------ccccccceeEeecc
Confidence 46789999999999988655443 332211 01112249999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchh
Q psy16310 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 965 (1493)
Q Consensus 886 reLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~l 965 (1493)
.+..|+..++..+.....+++..+.|+..............+|+|+|.+.+.............-.+.++||+||+|.+
T Consensus 68 -~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 68 -SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRL 146 (299)
T ss_dssp -TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGG
T ss_pred -chhhhhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccc
Confidence 8889999999998865566777666654122222222345689999999987100000000000124789999999998
Q ss_pred ccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 966 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 966 l~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
-.. .......+..+ .....+++|||+...
T Consensus 147 k~~--~s~~~~~l~~l------~~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 147 KNK--DSKRYKALRKL------RARYRWLLSGTPIQN 175 (299)
T ss_dssp TTT--TSHHHHHHHCC------CECEEEEE-SS-SSS
T ss_pred ccc--ccccccccccc------ccceEEeeccccccc
Confidence 432 22334444444 256789999997643
No 317
>KOG0386|consensus
Probab=98.60 E-value=5.1e-07 Score=111.39 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=101.9
Q ss_pred cCchhhHHHHHH---hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC---CeEEEEec
Q psy16310 529 HDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATD 602 (1493)
Q Consensus 529 ~~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~---~~VLVaTd 602 (1493)
.+.|+.+|-.+| ...+++++.||.-..-...+..+|...++....+.|.....+|-..++.|..-. ...|++|-
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 345665555444 445789999999988888899999999999999999999999999999997643 35689999
Q ss_pred hhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEe
Q psy16310 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648 (1493)
Q Consensus 603 v~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~ 648 (1493)
..+.|+|+...+.||.||.-+++..+.|+--||-|.|..-.+-++.
T Consensus 788 agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred ccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9999999999999999999999999999999999999775555544
No 318
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.60 E-value=2.1e-06 Score=116.97 Aligned_cols=114 Identities=20% Similarity=0.297 Sum_probs=98.6
Q ss_pred chhhHHHHHH----hhCCC--cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC--CCeEEEEec
Q psy16310 531 EKDSYLYYFI----LQHPG--RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ--NNSILLATD 602 (1493)
Q Consensus 531 ~k~~~l~~~l----~~~~~--~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g--~~~VLVaTd 602 (1493)
.|...+..++ ...+. +++||++-......+..+|...++....++|.++...|...++.|..+ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5566665555 22344 899999999999999999999998899999999999999999999986 456677888
Q ss_pred hhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE
Q psy16310 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644 (1493)
Q Consensus 603 v~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~ 644 (1493)
+++.|+++-..++||+||+..++....|...|+-|.|....+
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v 813 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPV 813 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCccee
Confidence 999999999999999999999999999999999998876543
No 319
>KOG0921|consensus
Probab=98.57 E-value=4.2e-07 Score=110.10 Aligned_cols=108 Identities=23% Similarity=0.344 Sum_probs=89.7
Q ss_pred CCcEEEEecchhhHHHHHHHHHhc-------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEE
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTML-------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~-------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~V 616 (1493)
++-++||.+.......|..+|-.. ...+...|+.+...++.++++....|..++++.|.+++.-+.|-++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 578999999999999998888543 4667889999999999999999999999999999999999999888888
Q ss_pred EEecCC------------------CChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 617 IHYHVP------------------RTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 617 I~yd~P------------------~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
|.-+.- .+....+||.||+||. ++|.|+.+.+.--
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ar 775 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRAR 775 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHH
Confidence 753321 2344568999999996 5899999886543
No 320
>KOG1002|consensus
Probab=98.57 E-value=3.1e-06 Score=96.33 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=83.5
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCeE-EEEechhhccCCCCCCcEEEEecCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSI-LLATDVAARGLDIPGIEHVIHYHVP 622 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g-~~~V-LVaTdv~~rGlDip~v~~VI~yd~P 622 (1493)
-+.|||..-......+.-.|...|+.+.-+.|+|++..|..+++.|.+. .+.| ||+--..+..+++-...+|++.|+=
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 4779998877777777778889999999999999999999999999875 4454 5566666788999999999999998
Q ss_pred CChHHHHHHHhccccCCC--CCeEEEEecCC
Q psy16310 623 RTSEIYIHRSGRTARANN--EGLTVVLIESD 651 (1493)
Q Consensus 623 ~s~~~yiQR~GRagR~g~--~G~~i~l~~~~ 651 (1493)
+|+.--.|.--|.-|.|. +-.++.|+-..
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 888766665555555553 45566665443
No 321
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.55 E-value=1.6e-06 Score=108.13 Aligned_cols=157 Identities=21% Similarity=0.170 Sum_probs=98.7
Q ss_pred hHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCC
Q psy16310 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCS 570 (1493)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~ 570 (1493)
.+...+..++.-.+........+........+......|...+...+.. .+.|+||-+.+.+..+.+++.|...+++
T Consensus 376 te~~EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~ 455 (822)
T COG0653 376 TEEEEFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIP 455 (822)
T ss_pred hhhhhhhhccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCC
Confidence 3333444444444433333333333233333444455666666555533 3789999999999999999999999998
Q ss_pred ccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCc-----------EEEEecCCCChHHHHHHHhccccCC
Q psy16310 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE-----------HVIHYHVPRTSEIYIHRSGRTARAN 639 (1493)
Q Consensus 571 ~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~-----------~VI~yd~P~s~~~yiQR~GRagR~g 639 (1493)
-.++.+.-. .|..-+-.+.--.-.|-|||++|+||-||.--. +||-..--.|-.-=-|-.||+||.|
T Consensus 456 h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 456 HNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred ceeeccccH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 877777654 333333333333446889999999999994222 3333332233333348999999999
Q ss_pred CCCeEEEEecCCc
Q psy16310 640 NEGLTVVLIESDE 652 (1493)
Q Consensus 640 ~~G~~i~l~~~~e 652 (1493)
.+|.+-.+++-+|
T Consensus 534 DpG~S~F~lSleD 546 (822)
T COG0653 534 DPGSSRFYLSLED 546 (822)
T ss_pred CcchhhhhhhhHH
Confidence 9998877765544
No 322
>KOG4439|consensus
Probab=98.54 E-value=1.8e-06 Score=102.70 Aligned_cols=103 Identities=12% Similarity=0.186 Sum_probs=80.6
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc--CCCeEE-EEechhhccCCCCCCcEEEEec
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNNSIL-LATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~--g~~~VL-VaTdv~~rGlDip~v~~VI~yd 620 (1493)
..+++|...-..-..-+...|...|.....+||.....+|..+++.|.. |..+|+ +.=...+-|||+-+.+|+|..|
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 3444444333333455667788889999999999999999999999953 545554 5555666999999999999999
Q ss_pred CCCChHHHHHHHhccccCCCCCeEEE
Q psy16310 621 VPRTSEIYIHRSGRTARANNEGLTVV 646 (1493)
Q Consensus 621 ~P~s~~~yiQR~GRagR~g~~G~~i~ 646 (1493)
+-+|+.-=-|.+-|.-|.|....+++
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceEE
Confidence 99999999999999999997654443
No 323
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.49 E-value=2.3e-05 Score=103.78 Aligned_cols=140 Identities=20% Similarity=0.150 Sum_probs=89.1
Q ss_pred CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccH
Q psy16310 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTr 886 (1493)
+.-+|.=-||||||+...-.+- .++. ....+.++||+-.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~---------------------------------------~~~~~~v~fvvDR~ 313 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLE---------------------------------------LPKNPKVLFVVDRK 313 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHh---------------------------------------ccCCCeEEEEechH
Confidence 4678899999999998543322 2211 13456799999999
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC-cEEEECcHHHHHHHHhCcCccccccceeEEEecccchh
Q psy16310 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP-HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 965 (1493)
Q Consensus 887 eLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~-~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~l 965 (1493)
+|-.|+.+.|..++....... ...+...-...+.... .|+|+|-+.|...+........ -.+=-++|+|||||-
T Consensus 314 dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~-~~~~ivvI~DEaHRS 388 (962)
T COG0610 314 DLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELL-KRKNVVVIIDEAHRS 388 (962)
T ss_pred HHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhcCCCcEEEEEecccchhhhccccccc-CCCcEEEEEechhhc
Confidence 999999999999874432221 2234444444555433 7999999999887765411111 112237899999982
Q ss_pred ccCCChhHHHHHHHHhcccCCCCCceEEEEecccc
Q psy16310 966 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 966 l~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~ 1000 (1493)
+.|+ .-..+-..+ ++...++||.|+-
T Consensus 389 -Q~G~--~~~~~~~~~------~~a~~~gFTGTPi 414 (962)
T COG0610 389 -QYGE--LAKLLKKAL------KKAIFIGFTGTPI 414 (962)
T ss_pred -cccH--HHHHHHHHh------ccceEEEeeCCcc
Confidence 3232 222222222 4478999999985
No 324
>KOG4439|consensus
Probab=98.46 E-value=4.3e-06 Score=99.58 Aligned_cols=103 Identities=13% Similarity=0.194 Sum_probs=85.0
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc--CCCC-eEEeehhhhccccCCCccEEEEec
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNNS-ILLATDVAARGLDIPGIEHVIHYH 1153 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~--g~~~-VLVaTdv~~~GiDip~v~~VI~~d 1153 (1493)
..+++|...-.....-+...|...|.....+||.....+|..+++.|.. |..+ .|++=.+.+.|+|+-+.+|+|..|
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 4556665555555666777888889999999999999999999999974 4344 456677888999999999999999
Q ss_pred CCCChhHHHHHHhccCCCCCCCeEEE
Q psy16310 1154 VPRTSEIYIHRSGRTARANNEGLTLV 1179 (1493)
Q Consensus 1154 ~p~s~~~yiqr~GR~gR~g~~G~~i~ 1179 (1493)
+.+++..=-|.+-|.-|.|..-.+++
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceEE
Confidence 99999999999999999998776655
No 325
>KOG1002|consensus
Probab=98.45 E-value=7.3e-06 Score=93.42 Aligned_cols=122 Identities=15% Similarity=0.162 Sum_probs=96.5
Q ss_pred cchhhHHHH---HHHhC--CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCC-eEEeeh
Q psy16310 1063 DEKDSYLYY---FILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNS-ILLATD 1135 (1493)
Q Consensus 1063 ~~k~~~l~~---~l~~~--~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g-~~~-VLVaTd 1135 (1493)
..|+.+|.. ++... .-+.|||..-....+.+.-.|...|+.+.-+-|+|++..|..+++.|++. .+. .||+-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 345555543 33333 45789999999999999999999999999999999999999999999975 344 466777
Q ss_pred hhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC--CCeEEEEecCC
Q psy16310 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN--EGLTLVLIESD 1184 (1493)
Q Consensus 1136 v~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~ 1184 (1493)
+.+..+++-...+|+.+|+-+++..-+|.-.|.-|-|+ +=..+.|+.++
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 77788999999999999999999888777777777764 45566666444
No 326
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.44 E-value=3.6e-07 Score=107.29 Aligned_cols=122 Identities=20% Similarity=0.171 Sum_probs=71.4
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcc
Q psy16310 188 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~P 267 (1493)
..+..|++..+|+|||+..+..+. .+.... .......+|||||
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~------------------------------------~~~~~~~~LIv~P 66 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEF------------------------------------PQRGEKKTLIVVP 66 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCC------------------------------------TTSS-S-EEEEE-
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhcc------------------------------------ccccccceeEeec
Confidence 346789999999999998665443 332210 0011124999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc-cccccccccEEEEecCc
Q psy16310 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF-HLTELYKINYLVIDETD 346 (1493)
Q Consensus 268 TreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~-~~~~l~~i~~lViDEAh 346 (1493)
. .+..|+...+..+.....+++..+.|...............+|+|+|.+.+...-..... .+.. .++++||+||+|
T Consensus 67 ~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-~~~~~vIvDEaH 144 (299)
T PF00176_consen 67 S-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-IKWDRVIVDEAH 144 (299)
T ss_dssp T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-SEEEEEEETTGG
T ss_pred c-chhhhhhhhhccccccccccccccccccccccccccccccceeeecccccccccccccccccccc-ccceeEEEeccc
Confidence 9 888999999999886546677766666512222222334568999999998710000000 0111 147899999999
Q ss_pred hh
Q psy16310 347 RM 348 (1493)
Q Consensus 347 ~l 348 (1493)
.+
T Consensus 145 ~~ 146 (299)
T PF00176_consen 145 RL 146 (299)
T ss_dssp GG
T ss_pred cc
Confidence 88
No 327
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.41 E-value=3.9e-06 Score=107.66 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=40.5
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l 364 (1493)
..|+++||..|..-|-.+.+... .|..|||||||++.+..-...+..++..-
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~---~itgiiv~~Ahr~~~~~~eaFI~rlyr~~ 59 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPE---LITGILVLRADRIIESSQEAFILRLYRQK 59 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHH---HccEEEEeecccccccccHHHHHHHHHHh
Confidence 37999999999877766666544 79999999999998776666666666543
No 328
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.37 E-value=2.2e-05 Score=98.30 Aligned_cols=121 Identities=24% Similarity=0.201 Sum_probs=83.3
Q ss_pred ccchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhh
Q psy16310 1062 HDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138 (1493)
Q Consensus 1062 ~~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~ 1138 (1493)
...|....+..+. ..+.|+||-+.++...+.+...|...|++-.++.+.-. .|+.-+-.+....-.|-|||++|+
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAG 488 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAG 488 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCcccccccccc
Confidence 3445555555443 34889999999999999999999999998777766543 444434444434456889999999
Q ss_pred ccccCCCcc-----------EEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCC
Q psy16310 1139 RGLDIPGIE-----------HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184 (1493)
Q Consensus 1139 ~GiDip~v~-----------~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 1184 (1493)
||-||.=-. +||--.-..|..-=-|-.||+||-|-+|.+-.+++-.
T Consensus 489 RGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 489 RGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred CCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 999994222 3442222223333347789999999999988777543
No 329
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.35 E-value=4e-06 Score=93.47 Aligned_cols=131 Identities=17% Similarity=0.236 Sum_probs=95.2
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..|++.|..++- ++..|+ |+...||=|||++..+|+.-..+.
T Consensus 76 ~~p~~vQll~~l-~L~~G~--laEm~TGEGKTli~~l~a~~~AL~----------------------------------- 117 (266)
T PF07517_consen 76 LRPYDVQLLGAL-ALHKGR--LAEMKTGEGKTLIAALPAALNALQ----------------------------------- 117 (266)
T ss_dssp ----HHHHHHHH-HHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-----------------------------------
T ss_pred CcccHHHHhhhh-hcccce--eEEecCCCCcHHHHHHHHHHHHHh-----------------------------------
Confidence 478999999984 665654 999999999999998887655433
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHH-HHHHhCcCc
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLGHFH 947 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~-~~l~~~~~~ 947 (1493)
|..|=|++...-||..=++.+..+...+|+.+++++++.+........ .+||+.+|...+. |.|+.....
T Consensus 118 -------G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~ 188 (266)
T PF07517_consen 118 -------GKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLAL 188 (266)
T ss_dssp -------SS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-S
T ss_pred -------cCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhh
Confidence 335889999999999999999999999999999999988765433333 3589999999885 445432211
Q ss_pred cc---cccceeEEEecccchhc
Q psy16310 948 LT---ELYKINYLVIDETDRMI 966 (1493)
Q Consensus 948 ~~---~l~~l~~lVlDEah~ll 966 (1493)
.. ....+.++||||||.|+
T Consensus 189 ~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 189 SKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp SGGG--SSSSSEEEECTHHHHT
T ss_pred ccchhccCCCCEEEEeccceEE
Confidence 11 13568899999999875
No 330
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.32 E-value=4.2e-06 Score=93.29 Aligned_cols=133 Identities=17% Similarity=0.250 Sum_probs=95.5
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.|+ .|+++|.-++- +|..|+ |+...||-|||++..+|+.-..+
T Consensus 74 ~g~-~p~~vQll~~l-~L~~G~--laEm~TGEGKTli~~l~a~~~AL--------------------------------- 116 (266)
T PF07517_consen 74 LGL-RPYDVQLLGAL-ALHKGR--LAEMKTGEGKTLIAALPAALNAL--------------------------------- 116 (266)
T ss_dssp TS-----HHHHHHHH-HHHTTS--EEEESTTSHHHHHHHHHHHHHHT---------------------------------
T ss_pred cCC-cccHHHHhhhh-hcccce--eEEecCCCCcHHHHHHHHHHHHH---------------------------------
Confidence 355 69999999884 665553 88999999999999888764432
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHH-HHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~-~~l~~~ 327 (1493)
.|..|=|++..--||..=++.+..+...+|+++++++++.+......... ++|+.+|...|. +.|...
T Consensus 117 ---------~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~ 185 (266)
T PF07517_consen 117 ---------QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDN 185 (266)
T ss_dssp ---------TSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHT
T ss_pred ---------hcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHH
Confidence 34568999999999999999999999999999999999988655444333 489999999875 345432
Q ss_pred Ccc---ccccccccEEEEecCchhh
Q psy16310 328 HFH---LTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 328 ~~~---~~~l~~i~~lViDEAh~ll 349 (1493)
... ....+.+.++||||||.++
T Consensus 186 ~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 186 LALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhccchhccCCCCEEEEeccceEE
Confidence 111 1113578999999999986
No 331
>KOG0388|consensus
Probab=98.31 E-value=1.7e-05 Score=94.06 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=95.6
Q ss_pred HHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCC-eEEeehhhhccccCCCcc
Q psy16310 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS-ILLATDVAARGLDIPGIE 1147 (1493)
Q Consensus 1069 l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~-VLVaTdv~~~GiDip~v~ 1147 (1493)
|+-.+...+.++|+|+.-.+..+.+..+|...++.-.-+.|.....+|..++..|....+- .|++|-+.+-||++...+
T Consensus 1036 LL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAAD 1115 (1185)
T KOG0388|consen 1036 LLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAAD 1115 (1185)
T ss_pred HHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccc
Confidence 3333455688999999999999999999999999999999999999999999999986654 588999999999999999
Q ss_pred EEEEecCCCChhHHHHHHhccCCCCCCCe
Q psy16310 1148 HVIHYHVPRTSEIYIHRSGRTARANNEGL 1176 (1493)
Q Consensus 1148 ~VI~~d~p~s~~~yiqr~GR~gR~g~~G~ 1176 (1493)
.||.||.-.++..-.|...||-|-|..-.
T Consensus 1116 TViFYdSDWNPT~D~QAMDRAHRLGQTrd 1144 (1185)
T KOG0388|consen 1116 TVIFYDSDWNPTADQQAMDRAHRLGQTRD 1144 (1185)
T ss_pred eEEEecCCCCcchhhHHHHHHHhccCccc
Confidence 99999999999999999999999987544
No 332
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.26 E-value=2.1e-05 Score=107.09 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=100.1
Q ss_pred chhhHHHHHH----HhCCC--cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC--CCCeEEeeh
Q psy16310 1064 EKDSYLYYFI----LQHPG--RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ--NNSILLATD 1135 (1493)
Q Consensus 1064 ~k~~~l~~~l----~~~~~--~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g--~~~VLVaTd 1135 (1493)
.|...+..++ ...+. +++||++.....+.+...|...++....++|.++...|...++.|.++ ..-++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4555555555 22345 899999999999999999999998889999999999999999999986 455677888
Q ss_pred hhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEE
Q psy16310 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180 (1493)
Q Consensus 1136 v~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l 1180 (1493)
+.+.|+++-..++||+||+..++....|...|+-|.|+...+.++
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999999876655443
No 333
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.21 E-value=7.6e-06 Score=104.70 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=58.1
Q ss_pred CCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCC--CCCC--------eEEEEecCCCHHHHHHHHHhc
Q psy16310 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA--NNEG--------LTLVLIESDEIPLYIKMFNSL 1196 (1493)
Q Consensus 1127 ~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~--g~~G--------~~i~l~~~~e~~~~~~~~~~~ 1196 (1493)
..+.+++-+++.+|.|.|+|-.+...+-..|...-.|.+||.-|. ...| .-.++++..+..+...+.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999999999888888899999999984 1122 223345667777888888887
Q ss_pred ccc
Q psy16310 1197 EKK 1199 (1493)
Q Consensus 1197 ~~~ 1199 (1493)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 654
No 334
>KOG1015|consensus
Probab=98.20 E-value=0.00032 Score=86.17 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=99.2
Q ss_pred ccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhc----------------------CCCccccccCCCH
Q psy16310 526 LCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML----------------------KCSPLPLHASMNQ 580 (1493)
Q Consensus 526 ~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~----------------------~~~~~~lhg~~~~ 580 (1493)
....+.|..+|+.+|.. .+.+.|||..|..+...+-.+|... |...+.+.|..+.
T Consensus 1121 v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s 1200 (1567)
T KOG1015|consen 1121 VLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTS 1200 (1567)
T ss_pred hhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccH
Confidence 33456777778877754 4789999999999999888888543 3344568889999
Q ss_pred HHHHHHHHHHhcCC----CeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEE
Q psy16310 581 RQRLKNLDRFRDQN----NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646 (1493)
Q Consensus 581 ~~R~~vl~~Fr~g~----~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~ 646 (1493)
.+|......|.+-. .-.||+|-+.+-|||+-..+.||.||..+|+.--+|.+=|+-|.|...-||+
T Consensus 1201 ~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1201 QSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 99999999997632 2468999999999999999999999999999999999999999997654443
No 335
>KOG0921|consensus
Probab=98.19 E-value=5.2e-06 Score=100.96 Aligned_cols=105 Identities=24% Similarity=0.360 Sum_probs=86.3
Q ss_pred CCcEEEEecchhhHHHHHHHHHhc-------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEE
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTML-------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 1149 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~V 1149 (1493)
++-++||.+--.....|...|... .+.++..|+.+...+..++.+....|..++++.|.+++.-+-+.++..|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 678999999998888888877544 4678889999998888899888889999999999999999999998888
Q ss_pred EEecCC------------------CChhHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1150 IHYHVP------------------RTSEIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1150 I~~d~p------------------~s~~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
|..+.- .+....+||.||+||. +.|.|..++.
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 753321 2345679999999996 6888888874
No 336
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.04 E-value=0.00014 Score=89.48 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=61.0
Q ss_pred CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCC--CCCCe-----------EEEEecCCCHHHHHHH
Q psy16310 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA--NNEGL-----------TLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1126 g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~--g~~G~-----------~i~l~~~~e~~~~~~~ 1192 (1493)
...+.+++-.++-+|.|=|+|=.++-.....|..+=+|.+||.-|- ...|. -.+++...+......+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999994 33343 3346677778888888
Q ss_pred HHhccccC
Q psy16310 1193 FNSLEKKV 1200 (1493)
Q Consensus 1193 ~~~~~~~~ 1200 (1493)
.+.+....
T Consensus 562 qkEI~~~s 569 (985)
T COG3587 562 QKEINDES 569 (985)
T ss_pred HHHHHHhh
Confidence 77776643
No 337
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.90 E-value=0.00014 Score=93.50 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=41.1
Q ss_pred CCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccC
Q psy16310 594 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638 (1493)
Q Consensus 594 ~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~ 638 (1493)
..+.+++-+.+.+|.|-|+|-.+....-..|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 578999999999999999999988899889999999999998884
No 338
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.86 E-value=3.1e-05 Score=81.64 Aligned_cols=113 Identities=23% Similarity=0.351 Sum_probs=76.5
Q ss_pred HHHHhhCCCcEEEEecchhhHHHHHHHHHhcCC--CccccccCCCHHHHHHHHHHHhcCCCeEEEEec--hhhccCCCCC
Q psy16310 537 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC--SPLPLHASMNQRQRLKNLDRFRDQNNSILLATD--VAARGLDIPG 612 (1493)
Q Consensus 537 ~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~--~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTd--v~~rGlDip~ 612 (1493)
..++...++++|||++|+...+.+...+..... ....+.. ....+..+++.|+.+...||+|+. .+.+|||+|+
T Consensus 2 ~~l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 2 LELISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred hHHHhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 345566789999999999999999998876532 2222332 356778999999999999999999 9999999996
Q ss_pred --CcEEEEecCCC----Ch--------------------------HHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 613 --IEHVIHYHVPR----TS--------------------------EIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 613 --v~~VI~yd~P~----s~--------------------------~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
++.||...+|. ++ ....|-+||+-|.... ++++++-++.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~llD~R 150 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDD-YGVIILLDSR 150 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT--EEEEEEESGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCC-cEEEEEEcCc
Confidence 88999998882 21 1125889999998754 4444443433
No 339
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.83 E-value=0.00032 Score=93.26 Aligned_cols=114 Identities=21% Similarity=0.168 Sum_probs=74.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccH
Q psy16310 190 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTr 269 (1493)
+.-+|+=-||||||+.-+-. -+.+.. ....+.++|||..+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~-A~~l~~---------------------------------------~~~~~~v~fvvDR~ 313 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKL-ARLLLE---------------------------------------LPKNPKVLFVVDRK 313 (962)
T ss_pred CceEEEeecCCchHHHHHHH-HHHHHh---------------------------------------ccCCCeEEEEechH
Confidence 45788999999999973322 222221 13457899999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC-CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchh
Q psy16310 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 348 (1493)
Q Consensus 270 eLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~-~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~l 348 (1493)
+|-.|..+.|..+....... . ...+...-...+..+ ..|||+|-+.|-..+........ -.+=-++|+||||+-
T Consensus 314 dLd~Q~~~~f~~~~~~~~~~-~---~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~-~~~~ivvI~DEaHRS 388 (962)
T COG0610 314 DLDDQTSDEFQSFGKVAFND-P---KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELL-KRKNVVVIIDEAHRS 388 (962)
T ss_pred HHHHHHHHHHHHHHHhhhhc-c---cccCHHHHHHHHhcCCCcEEEEEecccchhhhccccccc-CCCcEEEEEechhhc
Confidence 99999999999886432221 1 333444444444433 37999999999887765411111 112246899999975
No 340
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.66 E-value=8.7e-05 Score=78.27 Aligned_cols=112 Identities=24% Similarity=0.352 Sum_probs=76.1
Q ss_pred HHHHHhCCCcEEEEecchhhHHHHHHHHHhcCC--CccccccCCCHHHHHHHHHHHhcCCCCeEEeeh--hhhccccCCC
Q psy16310 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC--SPLPLHASMNQRQRLKNLDRFRDQNNSILLATD--VAARGLDIPG 1145 (1493)
Q Consensus 1070 ~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTd--v~~~GiDip~ 1145 (1493)
..++...++.+|||++|....+.+...+...+. ....+.- ....+..+++.|+.++..||+|+. .+++|||+|+
T Consensus 2 ~~l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 2 LELISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred hHHHhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 345566789999999999999999999987542 2222332 355778999999999999999999 9999999996
Q ss_pred --ccEEEEecCCC----Ch--------------------------hHHHHHHhccCCCCCCCeEEEEecC
Q psy16310 1146 --IEHVIHYHVPR----TS--------------------------EIYIHRSGRTARANNEGLTLVLIES 1183 (1493)
Q Consensus 1146 --v~~VI~~d~p~----s~--------------------------~~yiqr~GR~gR~g~~G~~i~l~~~ 1183 (1493)
++.||...+|- ++ ....|.+||+-|....=.+++++++
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 77899988873 21 1135889999998664444444433
No 341
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.64 E-value=0.0025 Score=82.49 Aligned_cols=67 Identities=18% Similarity=0.094 Sum_probs=46.8
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
..|+++||..|...|-.+.+. +..+..|||||||++.+..-...+..+...- +...-+.+|||.+..
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~---~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~-----n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIP---PELITGILVLRADRIIESSQEAFILRLYRQK-----NKTGFIKAFSDNPEA 74 (814)
T ss_pred CCEEEEechhhHhHHhcCCCC---HHHccEEEEeecccccccccHHHHHHHHHHh-----CCCcceEEecCCCcc
Confidence 379999999998777666654 4578999999999987655444444444332 234457888888764
No 342
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.40 E-value=0.00047 Score=84.96 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=41.9
Q ss_pred CCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhcccc
Q psy16310 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637 (1493)
Q Consensus 593 g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR 637 (1493)
...+.+++-.++-+|.|=|+|=.++-.....|..+=+|.+||.-|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 347899999999999999999999999999999999999999878
No 343
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.39 E-value=0.00077 Score=75.82 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=47.2
Q ss_pred ChHHHHhhhhhhhccCCc-EEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 174 PTKIQSMVMPSALLARKD-IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 174 pt~iQ~~~i~~~l~~~~d-viv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
+.+.|.+++..++ .... .+|.||.|||||.+.+- ++..++....
T Consensus 2 ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~--------------------------------- 46 (236)
T PF13086_consen 2 LNESQREAIQSAL-SSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK--------------------------------- 46 (236)
T ss_dssp --HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHHHH-HHHHH--------------------------------------
T ss_pred CCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHHHH-HHHHhccchh---------------------------------
Confidence 6788999997555 5556 89999999999965332 3333321000
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHH
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILD 281 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~ 281 (1493)
......+.++|+++||..-+.++...+.+
T Consensus 47 ~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 47 SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 01124556799999999999999988877
No 344
>KOG0391|consensus
Probab=97.38 E-value=0.00058 Score=85.66 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=101.2
Q ss_pred ccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC-C-eEEEEech
Q psy16310 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN-N-SILLATDV 603 (1493)
Q Consensus 526 ~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~-~-~VLVaTdv 603 (1493)
.|..-..+.+|+..|...+.++|||+.-......|-.+|+..|+....+.|....++|...+++|.... + ..+++|-.
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 333344556677777788999999999999999999999999999999999999999999999997644 3 45788999
Q ss_pred hhccCCCCCCcEEEEecCCCChH------HHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 604 AARGLDIPGIEHVIHYHVPRTSE------IYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 604 ~~rGlDip~v~~VI~yd~P~s~~------~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
.+.|||+-+.+.||.||--+|+. +..||+|+| +.-+.|.|++..-
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISERT 1388 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccch
Confidence 99999999999999999988864 567777773 3467788887654
No 345
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.29 E-value=0.001 Score=74.83 Aligned_cols=73 Identities=15% Similarity=0.291 Sum_probs=47.4
Q ss_pred CcHHHHhhHHHhhccCCc-EEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 791 PTKIQSMVMPSALLARKD-IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 791 pt~iQ~~~i~~~l~~~~d-vlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
+.+.|..|+..++ .... .++.||.|||||.+.. -++..++....
T Consensus 2 ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~--------------------------------- 46 (236)
T PF13086_consen 2 LNESQREAIQSAL-SSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFK--------------------------------- 46 (236)
T ss_dssp --HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHHH-HHHHHH--------------------------------------
T ss_pred CCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHHH-HHHHHhccchh---------------------------------
Confidence 5788999997655 4456 8999999999995433 33333311000
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHH
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILD 898 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~ 898 (1493)
......+.++|+++||..-+.++.+.+.+
T Consensus 47 ~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 47 SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 00134566899999999999999998877
No 346
>KOG0391|consensus
Probab=96.98 E-value=0.002 Score=81.20 Aligned_cols=125 Identities=21% Similarity=0.294 Sum_probs=100.3
Q ss_pred EEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC--CeEEeeh
Q psy16310 1058 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN--SILLATD 1135 (1493)
Q Consensus 1058 ~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~--~VLVaTd 1135 (1493)
+.|..-.....|+.-|..++.++|||..-.+..+-|..+|+..|+--.-+.|...-++|...+++|..... -.+++|-
T Consensus 1257 yDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1257 YDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred cccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 45555566666677777789999999999999999999999999988899999999999999999987543 3577899
Q ss_pred hhhccccCCCccEEEEecCCCChh------HHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1136 VAARGLDIPGIEHVIHYHVPRTSE------IYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1136 v~~~GiDip~v~~VI~~d~p~s~~------~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
..+.|||+-+.++||.||--+++. +..||||+| +.=+.|-|++..-+
T Consensus 1337 SggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1337 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISERTI 1389 (1958)
T ss_pred CCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccchH
Confidence 999999999999999999887764 455666653 23455666665543
No 347
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.96 E-value=0.00098 Score=71.58 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=32.6
Q ss_pred CCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHh
Q psy16310 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~ 216 (1493)
...++.|..++. ++....-+++.||.|||||+.++..+++.+..
T Consensus 3 ~p~~~~Q~~~~~-al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 3 KPKNEEQKFALD-ALLNNDLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp ---SHHHHHHHH-HHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHH-HHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 456889999997 66677789999999999999998888887743
No 348
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.94 E-value=0.0025 Score=68.55 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=32.2
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~ 833 (1493)
-.|+-|..++. ++....-+++.||.|||||+.++..+++.+..
T Consensus 4 p~~~~Q~~~~~-al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 4 PKNEEQKFALD-ALLNNDLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp --SHHHHHHHH-HHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHH-HHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 45789999997 55577788999999999999998888887743
No 349
>KOG1802|consensus
Probab=96.92 E-value=0.0043 Score=74.30 Aligned_cols=84 Identities=19% Similarity=0.168 Sum_probs=63.4
Q ss_pred HHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHH
Q psy16310 782 ALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861 (1493)
Q Consensus 782 ~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (1493)
.+...|+.++..-|..|..+.| +..=.|+++|.|+|||.+..-.+++.+ .
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~IVyhl~-~---------------------------- 451 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSATIVYHLA-R---------------------------- 451 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHHHHHHHH-H----------------------------
Confidence 4455678888999999998666 555678999999999998665554433 1
Q ss_pred hhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEE
Q psy16310 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 911 (1493)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~ 911 (1493)
.....+||.+|+..-+.|+++.+.+.+ ++|.-+.
T Consensus 452 ------------~~~~~VLvcApSNiAVDqLaeKIh~tg----LKVvRl~ 485 (935)
T KOG1802|consen 452 ------------QHAGPVLVCAPSNIAVDQLAEKIHKTG----LKVVRLC 485 (935)
T ss_pred ------------hcCCceEEEcccchhHHHHHHHHHhcC----ceEeeee
Confidence 233469999999999999999887754 6666554
No 350
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.92 E-value=0.0026 Score=68.99 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=43.3
Q ss_pred CCcHHHHhhHHHhhccCC-cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 790 TPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
++++-|..++..++..+. -++++|+.|+|||.+ +..+...+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~----------------------------------- 44 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA----------------------------------- 44 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-----------------------------------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-----------------------------------
Confidence 368899999987665553 467789999999975 3334433311
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHH
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNH 895 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~ 895 (1493)
.+.++++++||...+....+.
T Consensus 45 ------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 45 ------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp ------TT--EEEEESSHHHHHHHHHH
T ss_pred ------CCCeEEEECCcHHHHHHHHHh
Confidence 235799999999988876554
No 351
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.91 E-value=0.0027 Score=75.99 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=59.6
Q ss_pred cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHH
Q psy16310 808 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTre 887 (1493)
-++|.|..|||||++++-.+. .+. ....+..++++++...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l~---------------------------------------~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-ELQ---------------------------------------NSEEGKKVLYLCGNHP 42 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-Hhh---------------------------------------ccccCCceEEEEecch
Confidence 478999999999988543332 220 1134456899999999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc
Q psy16310 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 967 (1493)
Q Consensus 888 La~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~ 967 (1493)
|...+...+.... .. ......+..|..+...+. .........++||+||||+|..
T Consensus 43 l~~~l~~~l~~~~----------~~------------~~~~~~~~~~~~~i~~~~---~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 43 LRNKLREQLAKKY----------NP------------KLKKSDFRKPTSFINNYS---ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred HHHHHHHHHhhhc----------cc------------chhhhhhhhhHHHHhhcc---cccccCCcCCEEEEehhHhhhh
Confidence 9998888776532 00 001223344444433332 0112244679999999999988
Q ss_pred C
Q psy16310 968 S 968 (1493)
Q Consensus 968 ~ 968 (1493)
.
T Consensus 98 ~ 98 (352)
T PF09848_consen 98 K 98 (352)
T ss_pred c
Confidence 4
No 352
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.91 E-value=0.006 Score=68.50 Aligned_cols=176 Identities=19% Similarity=0.167 Sum_probs=104.7
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhc---------cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcc
Q psy16310 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALL---------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842 (1493)
Q Consensus 772 ~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~---------~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~ 842 (1493)
.+.|++.++.. | .++..|.+++-.+.. .+.-.++--.||.||.-...--|++.++.+
T Consensus 25 ~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------- 90 (303)
T PF13872_consen 25 RLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------- 90 (303)
T ss_pred ccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--------
Confidence 44566654432 2 357888888754331 134577788999999866555566665432
Q ss_pred cCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH
Q psy16310 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~ 922 (1493)
..++|++..+-.|-....+.++.++.. .+.+..+.. ..... .
T Consensus 91 ---------------------------------r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~~---~ 132 (303)
T PF13872_consen 91 ---------------------------------RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYGD---I 132 (303)
T ss_pred ---------------------------------CCceEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccCc---C
Confidence 236899999999999999999998744 444444332 10000 0
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCcccccc---------ceeEEEecccchhccCCC--------hhHHHHHHHHhcccC
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELY---------KINYLVIDETDRMIESGH--------FPELKNILDRVTMTE 985 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~---------~l~~lVlDEah~ll~~~~--------~~~l~~il~~l~~~~ 985 (1493)
..-.-.|+++|-..|...-..+......+. .=.+|||||||.+-...- ...+..+...|
T Consensus 133 ~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L---- 208 (303)
T PF13872_consen 133 IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL---- 208 (303)
T ss_pred CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC----
Confidence 111235899998777655432111111111 124899999999855432 12233333444
Q ss_pred CCCCceEEEEecccccchHh
Q psy16310 986 TSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 986 ~~~~~q~ll~SATl~~~~~~ 1005 (1493)
++.+++.+|||-..+..+
T Consensus 209 --P~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 209 --PNARVVYASATGASEPRN 226 (303)
T ss_pred --CCCcEEEecccccCCCce
Confidence 456799999999765543
No 353
>KOG0388|consensus
Probab=96.91 E-value=0.0029 Score=75.89 Aligned_cols=123 Identities=16% Similarity=0.194 Sum_probs=103.8
Q ss_pred cCchhhHHHHHH---hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCe-EEEEechh
Q psy16310 529 HDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS-ILLATDVA 604 (1493)
Q Consensus 529 ~~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~-VLVaTdv~ 604 (1493)
.+.|+..|-.+| ...++++|+|+.-.+....+..+|...++....+.|.....+|..+++.|....+- .|++|-..
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 455555555544 44578999999999999999999999999999999999999999999999886654 57899999
Q ss_pred hccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC--eEEEEecCC
Q psy16310 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESD 651 (1493)
Q Consensus 605 ~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G--~~i~l~~~~ 651 (1493)
+-||++...+.||.||..+++..-.|...||-|-|..- .+|.|++..
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 99999999999999999999999999999999988653 344455443
No 354
>KOG1803|consensus
Probab=96.90 E-value=0.0041 Score=74.57 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=49.6
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+.+-|.+|+..++....=.++.||+|+|||..-...|.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------------------------------------- 227 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------------------------------------- 227 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH-------------------------------------
Confidence 4677899999866644445689999999999987665555442
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHH
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHI 279 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~ 279 (1493)
.+.++|+.+||.+-+.-+.+.+
T Consensus 228 -----~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 228 -----QKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred -----cCCeEEEEcCchHHHHHHHHHh
Confidence 3357999999999998887754
No 355
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.89 E-value=0.0046 Score=67.11 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=42.9
Q ss_pred CChHHHHhhhhhhhccCC-cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchh
Q psy16310 173 TPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~-dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1493)
++++-|.+++..++.++. -++++++.|+|||.+. -.+...+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~----------------------------------- 44 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA----------------------------------- 44 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH-----------------------------------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh-----------------------------------
Confidence 368899999986655543 4677899999999863 223333321
Q ss_pred hhhcccCceEEEEEcccHHHHHHHHHH
Q psy16310 252 FVKKTRNKLYALILAPTRELAIQVQNH 278 (1493)
Q Consensus 252 ~~~~~~~~~~aLiL~PTreLa~Qi~~~ 278 (1493)
.+.++++++||...+....+.
T Consensus 45 ------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 45 ------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp ------TT--EEEEESSHHHHHHHHHH
T ss_pred ------CCCeEEEECCcHHHHHHHHHh
Confidence 236799999999998876555
No 356
>PF13245 AAA_19: Part of AAA domain
Probab=96.85 E-value=0.0037 Score=55.92 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=39.8
Q ss_pred hHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCe
Q psy16310 798 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 877 (1493)
Q Consensus 798 ~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1493)
+|..++.++.-+++.||.|||||...+-.+...+... ... +.
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-------------------------------------~~~-~~ 43 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-------------------------------------ADP-GK 43 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-------------------------------------cCC-CC
Confidence 3433454233455699999999976544443333110 112 55
Q ss_pred EEEEEcccHHHHHHHHHHH
Q psy16310 878 YALILAPTRELAIQVQNHI 896 (1493)
Q Consensus 878 ~~lil~PTreLa~Q~~~~~ 896 (1493)
+++|++||+..+..+.+.+
T Consensus 44 ~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 44 RVLVLAPTRAAADELRERL 62 (76)
T ss_pred eEEEECCCHHHHHHHHHHH
Confidence 7999999999999988877
No 357
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.82 E-value=0.0076 Score=77.14 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=50.9
Q ss_pred CCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchh
Q psy16310 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1493)
..+++.|..++..++.....+++.||+|+|||...+-.+.+.+ .
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~----------------------------------- 199 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-K----------------------------------- 199 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-H-----------------------------------
Confidence 3579999999987775556889999999999986443333322 1
Q ss_pred hhhcccCceEEEEEcccHHHHHHHHHHHHH
Q psy16310 252 FVKKTRNKLYALILAPTRELAIQVQNHILD 281 (1493)
Q Consensus 252 ~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~ 281 (1493)
.+.++|+++||..-|.++.+.+..
T Consensus 200 ------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 200 ------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred ------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 234699999999998888887765
No 358
>KOG1803|consensus
Probab=96.80 E-value=0.0058 Score=73.32 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=49.0
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.+.+-|..|+..++....=.+++||+|+|||..-...|.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------------------------------------- 227 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------------------------------------- 227 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH-------------------------------------
Confidence 4577899999755544445688999999999886655555442
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHH
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHI 896 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~ 896 (1493)
.+.++||.+||.+-+.-+.+.+
T Consensus 228 -----~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 228 -----QKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred -----cCCeEEEEcCchHHHHHHHHHh
Confidence 2357999999999988888854
No 359
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.80 E-value=0.0032 Score=75.37 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=59.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHH
Q psy16310 191 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTre 270 (1493)
-++|.|..|||||++++-- +..+. ....+..++++++...
T Consensus 3 v~~I~G~aGTGKTvla~~l-~~~l~---------------------------------------~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNL-AKELQ---------------------------------------NSEEGKKVLYLCGNHP 42 (352)
T ss_pred EEEEEecCCcCHHHHHHHH-HHHhh---------------------------------------ccccCCceEEEEecch
Confidence 4789999999999985433 22220 0123456999999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh
Q psy16310 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 350 (1493)
Q Consensus 271 La~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~ 350 (1493)
|+..+...+..... .......+..|..+.+.+. ........+++|||||||+|..
T Consensus 43 l~~~l~~~l~~~~~----------------------~~~~~~~~~~~~~~i~~~~---~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 43 LRNKLREQLAKKYN----------------------PKLKKSDFRKPTSFINNYS---ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred HHHHHHHHHhhhcc----------------------cchhhhhhhhhHHHHhhcc---cccccCCcCCEEEEehhHhhhh
Confidence 99988877755320 0001334445555544332 0111233689999999999987
Q ss_pred c
Q psy16310 351 S 351 (1493)
Q Consensus 351 ~ 351 (1493)
.
T Consensus 98 ~ 98 (352)
T PF09848_consen 98 K 98 (352)
T ss_pred c
Confidence 3
No 360
>PF13245 AAA_19: Part of AAA domain
Probab=96.80 E-value=0.0047 Score=55.23 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=39.4
Q ss_pred hhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCce
Q psy16310 181 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 260 (1493)
Q Consensus 181 ~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1493)
++..++.++.-+++.||.|||||...+--+...+... ... +.
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-------------------------------------~~~-~~ 43 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-------------------------------------ADP-GK 43 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-------------------------------------cCC-CC
Confidence 3433554333455699999999976444333332110 011 45
Q ss_pred EEEEEcccHHHHHHHHHHH
Q psy16310 261 YALILAPTRELAIQVQNHI 279 (1493)
Q Consensus 261 ~aLiL~PTreLa~Qi~~~~ 279 (1493)
++++++||+..+..+.+.+
T Consensus 44 ~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 44 RVLVLAPTRAAADELRERL 62 (76)
T ss_pred eEEEECCCHHHHHHHHHHH
Confidence 7999999999999988877
No 361
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.74 E-value=0.017 Score=62.65 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=81.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhc--cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALL--ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~--~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
.|....-|.+|+=.+. .++ -.+|.|.+.....+. .|.|.+.+.-+|.|||.+ ++|++..++..
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------------ 68 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------------ 68 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC------------
Confidence 3555556666665554 232 468999999876554 367999999999999988 78988877642
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC-CCcEEEEE--EcCCCHHH----H
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY-TPVKVACV--VGGMSTEK----Q 919 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~-~~~~v~~~--~gg~~~~~----~ 919 (1493)
....+.+++|. +|..|..+.+...... .+-++..+ ........ .
T Consensus 69 ----------------------------g~~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~ 119 (229)
T PF12340_consen 69 ----------------------------GSRLVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEK 119 (229)
T ss_pred ----------------------------CCcEEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHH
Confidence 12346666664 6999999998774433 34333333 33332111 1
Q ss_pred HH----HhcCCCcEEEECcHHHHHH
Q psy16310 920 LR----ILNKCPHILVATPGRLWEF 940 (1493)
Q Consensus 920 ~~----~l~~~~~IlV~TP~rl~~~ 940 (1493)
.. .....-.|+++||+.+..+
T Consensus 120 ~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 120 IRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHHHHHHHcCCEEEeChHHHHHH
Confidence 11 1122336999999998764
No 362
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.72 E-value=0.009 Score=76.50 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=50.7
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..+++.|..|+..++.....+++.||+|||||.+..-.+.+.+ .
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~----------------------------------- 199 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-K----------------------------------- 199 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-H-----------------------------------
Confidence 3568999999987775556889999999999976443333322 1
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHH
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILD 898 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~ 898 (1493)
.+.++|+++||..-+.++.+.+..
T Consensus 200 ------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 200 ------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred ------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 223699999999988888888765
No 363
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.69 E-value=0.0089 Score=67.13 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=88.2
Q ss_pred ccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhc---------cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCcc
Q psy16310 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALL---------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225 (1493)
Q Consensus 155 ~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~---------~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~ 225 (1493)
.+.|++.+.. .|. ++..|.+++--+.. .+.-.++--.||.||.-...-.|++..++
T Consensus 25 ~~~lp~~~~~----~g~--LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------- 89 (303)
T PF13872_consen 25 RLHLPEEVID----SGL--LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------- 89 (303)
T ss_pred ccCCCHHHHh----ccc--ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---------
Confidence 3456665443 233 78888888743431 13457788899999998755556655542
Q ss_pred CCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH
Q psy16310 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 305 (1493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~ 305 (1493)
.+.++|+++.+-.|-....+.++.++.. .+.+..+..- .... ...
T Consensus 90 --------------------------------Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~~-~~~ 134 (303)
T PF13872_consen 90 --------------------------------GRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYGD-IIR 134 (303)
T ss_pred --------------------------------CCCceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccCc-CCC
Confidence 2346999999999999999999988754 4444333321 0000 011
Q ss_pred hcCCCCEEEeCcHHHHHHHHcCCcccccccc---------ccEEEEecCchhhhc
Q psy16310 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYK---------INYLVIDETDRMIES 351 (1493)
Q Consensus 306 l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~---------i~~lViDEAh~ll~~ 351 (1493)
+ .-.||++|...|...-..+......|.+ =.+|||||||++-..
T Consensus 135 ~--~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 135 L--KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred C--CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 1 2369999998887664321111111111 147999999998543
No 364
>PRK10536 hypothetical protein; Provisional
Probab=96.66 E-value=0.022 Score=63.06 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=35.7
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHH
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l 831 (1493)
.++.--+..|...+. ++.....+++.||+|||||+.+....++.+
T Consensus 55 ~~i~p~n~~Q~~~l~-al~~~~lV~i~G~aGTGKT~La~a~a~~~l 99 (262)
T PRK10536 55 SPILARNEAQAHYLK-AIESKQLIFATGEAGCGKTWISAAKAAEAL 99 (262)
T ss_pred ccccCCCHHHHHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 455566888999986 666677889999999999998877776655
No 365
>KOG1132|consensus
Probab=96.66 E-value=0.005 Score=76.69 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=29.6
Q ss_pred CCCcHHHHhhHHHhh---ccCCcEEEEccCCCcchhHhhHHH
Q psy16310 789 KTPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPI 827 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l---~~~~dvlv~apTGsGKTla~~lpi 827 (1493)
..|+|.|...+..+| ....+.++-.|||+|||++-+-..
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~ 61 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCST 61 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHH
Confidence 468899988876554 445789999999999998754333
No 366
>KOG1132|consensus
Probab=96.54 E-value=0.012 Score=73.49 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=30.1
Q ss_pred CChHHHHhhhhhhh---ccCCcEEEEccCCCchhHHHHHHHHHH
Q psy16310 173 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTG 213 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l---~~~~dviv~apTGSGKTl~~~lpil~~ 213 (1493)
.|++.|...+...| ....+.++-.|||+|||++-+-..|..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW 64 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAW 64 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHH
Confidence 58899987655433 456789999999999999765554433
No 367
>PRK10536 hypothetical protein; Provisional
Probab=96.49 E-value=0.022 Score=63.05 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=36.6
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHH
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l 214 (1493)
.++...+..|...+. ++..+..+++.||+|||||+.++..+++.+
T Consensus 55 ~~i~p~n~~Q~~~l~-al~~~~lV~i~G~aGTGKT~La~a~a~~~l 99 (262)
T PRK10536 55 SPILARNEAQAHYLK-AIESKQLIFATGEAGCGKTWISAAKAAEAL 99 (262)
T ss_pred ccccCCCHHHHHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 466667888988886 677777889999999999998877776655
No 368
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.47 E-value=0.029 Score=60.85 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=91.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhc--cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALL--ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~--~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
+|....-|.+++=-+. .++ -.++.|.+.....+. .|.|.+.++-+|.|||.+ ++|++..++..
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------------ 68 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------------ 68 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC------------
Confidence 3555555666654433 344 489999998875553 367999999999999998 67887666531
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC-CCCeEEEEEE--cCCCHH-H---H
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK-YTPVKVACVV--GGMSTE-K---Q 302 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~-~~~i~v~~~~--G~~~~~-~---~ 302 (1493)
....+.+++| ++|..|..+.+..... -.+-.+..+- -..... . .
T Consensus 69 ----------------------------g~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~ 119 (229)
T PF12340_consen 69 ----------------------------GSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEK 119 (229)
T ss_pred ----------------------------CCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHH
Confidence 1123556665 5799999888865432 2232332221 122111 1 1
Q ss_pred H----HHhcCCCCEEEeCcHHHHHHHHc-------CCcc----c----cccccccEEEEecCchhhhc
Q psy16310 303 L----RILNKCPHILVATPGRLWEFIQL-------GHFH----L----TELYKINYLVIDETDRMIES 351 (1493)
Q Consensus 303 ~----~~l~~~~~IiV~TP~~L~~~l~~-------~~~~----~----~~l~~i~~lViDEAh~ll~~ 351 (1493)
. ......-.|+++||+.++.+.-. +... + ..|.....=|+||+|..+..
T Consensus 120 ~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 120 IRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 1 11122336999999987654321 1110 0 11223455799999998753
No 369
>KOG1802|consensus
Probab=96.41 E-value=0.014 Score=70.11 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=61.2
Q ss_pred HHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHH
Q psy16310 165 ALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 244 (1493)
Q Consensus 165 ~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1493)
.+...|+.++..-|..|+...| ++.=.|+++|.|+|||.+-.- |+.|+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~-IVyhl~~~--------------------------- 452 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLARQ--------------------------- 452 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHH-HHHHHHHh---------------------------
Confidence 4445578889999999998544 666788999999999997544 34444331
Q ss_pred hhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEE
Q psy16310 245 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 294 (1493)
Q Consensus 245 ~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~ 294 (1493)
....+|+.+|+.--+.|+...+.+. +++|.-++
T Consensus 453 -------------~~~~VLvcApSNiAVDqLaeKIh~t----gLKVvRl~ 485 (935)
T KOG1802|consen 453 -------------HAGPVLVCAPSNIAVDQLAEKIHKT----GLKVVRLC 485 (935)
T ss_pred -------------cCCceEEEcccchhHHHHHHHHHhc----CceEeeee
Confidence 2245999999999999998888664 45554443
No 370
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.91 E-value=0.036 Score=56.28 Aligned_cols=51 Identities=33% Similarity=0.498 Sum_probs=40.0
Q ss_pred cccccCCCHHHHHHHHHHHhcCC-CeEEEEechhhccCCCCC--CcEEEEecCC
Q psy16310 572 LPLHASMNQRQRLKNLDRFRDQN-NSILLATDVAARGLDIPG--IEHVIHYHVP 622 (1493)
Q Consensus 572 ~~lhg~~~~~~R~~vl~~Fr~g~-~~VLVaTdv~~rGlDip~--v~~VI~yd~P 622 (1493)
..+..+....+...+++.|+... ..||++|..+.+|+|+|+ ++.||...+|
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 33444555656788999998765 389999988999999997 5789888877
No 371
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.81 E-value=0.074 Score=67.43 Aligned_cols=143 Identities=20% Similarity=0.282 Sum_probs=78.0
Q ss_pred cHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhh
Q psy16310 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 871 (1493)
Q Consensus 792 t~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1493)
.++|..|+-.++ ..+-+++.|++|+|||.+.. -++..+...
T Consensus 154 ~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~-~ll~~l~~~------------------------------------- 194 (615)
T PRK10875 154 VDWQKVAAAVAL-TRRISVISGGPGTGKTTTVA-KLLAALIQL------------------------------------- 194 (615)
T ss_pred CHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHH-HHHHHHHHh-------------------------------------
Confidence 589999997555 55688999999999997632 233323211
Q ss_pred ccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc---Ccc
Q psy16310 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH---FHL 948 (1493)
Q Consensus 872 ~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~---~~~ 948 (1493)
......++++.+||..=|..+.+.+.......++. .. .. .....-..|-.+|+.....+. ...
T Consensus 195 ~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~---------~~-~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~ 260 (615)
T PRK10875 195 ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT---------DE-QK----KRIPEEASTLHRLLGAQPGSQRLRYHA 260 (615)
T ss_pred cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---------hh-hh----hcCCCchHHHHHHhCcCCCccchhhcc
Confidence 01123468899999998888877765543222210 00 00 000111233333322211000 000
Q ss_pred ccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEe
Q psy16310 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996 (1493)
Q Consensus 949 ~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~S 996 (1493)
.....+++||+|||-. ++ ...+..++..+ ++..+++++.
T Consensus 261 ~~~l~~dvlIvDEaSM-vd---~~lm~~ll~al-----~~~~rlIlvG 299 (615)
T PRK10875 261 GNPLHLDVLVVDEASM-VD---LPMMARLIDAL-----PPHARVIFLG 299 (615)
T ss_pred ccCCCCCeEEEChHhc-cc---HHHHHHHHHhc-----ccCCEEEEec
Confidence 1122468999999984 44 34566666665 3556677664
No 372
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.74 E-value=0.021 Score=63.34 Aligned_cols=88 Identities=24% Similarity=0.325 Sum_probs=66.9
Q ss_pred cCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcC-CCHHHHHHHhcC-CCcEEEECcHHHHHHHHhCcCcccc
Q psy16310 873 TRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGG-MSTEKQLRILNK-CPHILVATPGRLWEFIQLGHFHLTE 950 (1493)
Q Consensus 873 ~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg-~~~~~~~~~l~~-~~~IlV~TP~rl~~~l~~~~~~~~~ 950 (1493)
....|.+|||+..---|..+.+.++.+. .-+..|+-+++- +..++|...+.. ..+|.||||+||..++..+.+.
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~--- 198 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALS--- 198 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCC---
Confidence 4556889999999999999999888863 112344444443 367788888874 6799999999999999877653
Q ss_pred ccceeEEEecccch
Q psy16310 951 LYKINYLVIDETDR 964 (1493)
Q Consensus 951 l~~l~~lVlDEah~ 964 (1493)
+.++.+||||=-|.
T Consensus 199 l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 199 LSNLKRIVLDWSYL 212 (252)
T ss_pred cccCeEEEEcCCcc
Confidence 56889999997663
No 373
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.64 E-value=0.042 Score=55.99 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCC---eEEEEech--hhccCCCCC--CcEEEEecCC
Q psy16310 580 QRQRLKNLDRFRDQNN---SILLATDV--AARGLDIPG--IEHVIHYHVP 622 (1493)
Q Consensus 580 ~~~R~~vl~~Fr~g~~---~VLVaTdv--~~rGlDip~--v~~VI~yd~P 622 (1493)
..+...+++.|++... .||+|+.- +.+|||+|+ ++.||..++|
T Consensus 30 ~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 30 SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 3344688889987544 79999987 999999998 6889988877
No 374
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.56 E-value=0.08 Score=69.04 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=28.8
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
.+ ..+++-|.+|+..+. .++-+++.|+.|||||.+
T Consensus 320 ~~-~~l~~~Q~~Ai~~~~-~~~~~iitGgpGTGKTt~ 354 (720)
T TIGR01448 320 LR-KGLSEEQKQALDTAI-QHKVVILTGGPGTGKTTI 354 (720)
T ss_pred cC-CCCCHHHHHHHHHHH-hCCeEEEECCCCCCHHHH
Confidence 44 468999999998554 556899999999999975
No 375
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.55 E-value=0.087 Score=66.69 Aligned_cols=143 Identities=19% Similarity=0.239 Sum_probs=77.1
Q ss_pred HHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhc
Q psy16310 793 KIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872 (1493)
Q Consensus 793 ~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1493)
+.|..|+..++ .++-+++.|+.|||||.+.. .++..+.... .
T Consensus 148 ~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~------------------------------------~ 189 (586)
T TIGR01447 148 NWQKVAVALAL-KSNFSLITGGPGTGKTTTVA-RLLLALVKQS------------------------------------P 189 (586)
T ss_pred HHHHHHHHHHh-hCCeEEEEcCCCCCHHHHHH-HHHHHHHHhc------------------------------------c
Confidence 78999997555 45788999999999997632 2333332110 0
Q ss_pred cCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC---cCccc
Q psy16310 873 TRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG---HFHLT 949 (1493)
Q Consensus 873 ~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~---~~~~~ 949 (1493)
...+.++++.+||--=|..+.+.+......++.. . ... ....+-..|-.+|+...... .....
T Consensus 190 ~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~---------~-~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~ 255 (586)
T TIGR01447 190 KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA---------E-ALI----AALPSEAVTIHRLLGIKPDTKRFRHHER 255 (586)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---------h-hhh----hccccccchhhhhhcccCCcchhhhccc
Confidence 0112469999999988887777665433222110 0 000 00112233433433221100 00001
Q ss_pred cccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEe
Q psy16310 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996 (1493)
Q Consensus 950 ~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~S 996 (1493)
....+++||||||=. ++ ...+..++..+ +...+++++.
T Consensus 256 ~~l~~dvlIiDEaSM-vd---~~l~~~ll~al-----~~~~rlIlvG 293 (586)
T TIGR01447 256 NPLPLDVLVVDEASM-VD---LPLMAKLLKAL-----PPNTKLILLG 293 (586)
T ss_pred CCCcccEEEEccccc-CC---HHHHHHHHHhc-----CCCCEEEEEC
Confidence 122578999999984 44 24566666665 3556676664
No 376
>KOG1015|consensus
Probab=95.53 E-value=0.03 Score=69.76 Aligned_cols=117 Identities=18% Similarity=0.226 Sum_probs=94.9
Q ss_pred chhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhc----------------------CCCccccccCCCHHHHHH
Q psy16310 1064 EKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML----------------------KCSPLPLHASMNQRQRLK 1118 (1493)
Q Consensus 1064 ~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~----------------------~~~~~~lhg~m~~~~R~~ 1118 (1493)
.|...|+.+|.. -+.+.|||..+..+.+.+-.+|... |..-+.+.|..+..+|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 444455555543 3789999999999999998888643 334556788999999999
Q ss_pred HHHHHhcCC----CCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEE
Q psy16310 1119 NLDRFRDQN----NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180 (1493)
Q Consensus 1119 ~~~~F~~g~----~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l 1180 (1493)
...+|..-. .-.||+|-+.+-|||+-..+.||.||..+++.--+|-|=|+=|.|+..-+|++
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 999998632 23699999999999999999999999999999889999999999986655553
No 377
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.53 E-value=0.057 Score=54.87 Aligned_cols=50 Identities=32% Similarity=0.482 Sum_probs=38.9
Q ss_pred ccccCCCHHHHHHHHHHHhcCC-CCeEEeehhhhccccCCC--ccEEEEecCC
Q psy16310 1106 PLHASMNQRQRLKNLDRFRDQN-NSILLATDVAARGLDIPG--IEHVIHYHVP 1155 (1493)
Q Consensus 1106 ~lhg~m~~~~R~~~~~~F~~g~-~~VLVaTdv~~~GiDip~--v~~VI~~d~p 1155 (1493)
.+.-+....+...+++.|+... ..||++|.-+++|+|+|+ ++.||...+|
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 3444455556788999998754 379999988999999997 4678887776
No 378
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.49 E-value=0.12 Score=67.48 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=29.5
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
.++ .+++-|.+++..+ ..++-+++.++.|+|||.+.
T Consensus 320 ~~~-~l~~~Q~~Ai~~~-~~~~~~iitGgpGTGKTt~l 355 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTA-IQHKVVILTGGPGTGKTTIT 355 (720)
T ss_pred cCC-CCCHHHHHHHHHH-HhCCeEEEECCCCCCHHHHH
Confidence 454 6899999999855 45678999999999999863
No 379
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.48 E-value=0.038 Score=55.59 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=13.0
Q ss_pred cCCcEEEEccCCCcchhHhh
Q psy16310 805 ARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~ 824 (1493)
+++-+++.||+|+|||.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ----EEEEE-TTSSHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHH
Confidence 34678999999999997643
No 380
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.33 E-value=0.068 Score=53.78 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=12.8
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
+++.+++.|++|+|||.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 4567899999999999974
No 381
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.28 E-value=0.034 Score=61.64 Aligned_cols=87 Identities=24% Similarity=0.325 Sum_probs=66.4
Q ss_pred cCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCC-CHHHHHHHhcC-CCCEEEeCcHHHHHHHHcCCcccccc
Q psy16310 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGM-STEKQLRILNK-CPHILVATPGRLWEFIQLGHFHLTEL 334 (1493)
Q Consensus 257 ~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~-~~~~~~~~l~~-~~~IiV~TP~~L~~~l~~~~~~~~~l 334 (1493)
...|.+|||+..---|..+.+.++.+.. -+..|+-++.-. ...++...+.. ..+|.||||+||..++..+.+.+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l--- 199 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSL--- 199 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCc---
Confidence 3457899999988888888888877631 135555666554 67777777764 67999999999999998877654
Q ss_pred ccccEEEEecCch
Q psy16310 335 YKINYLVIDETDR 347 (1493)
Q Consensus 335 ~~i~~lViDEAh~ 347 (1493)
.++.+||||=-|.
T Consensus 200 ~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 200 SNLKRIVLDWSYL 212 (252)
T ss_pred ccCeEEEEcCCcc
Confidence 5889999997663
No 382
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.09 E-value=0.079 Score=53.98 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCC---CccccccCCCHHHHHHHHHHHhcCCC---CeEEeehh--hhccccCCC--ccEEEEecCC
Q psy16310 1091 KRLTQLLTMLKC---SPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDV--AARGLDIPG--IEHVIHYHVP 1155 (1493)
Q Consensus 1091 ~~l~~~L~~~~~---~~~~lhg~m~~~~R~~~~~~F~~g~~---~VLVaTdv--~~~GiDip~--v~~VI~~d~p 1155 (1493)
+.++..+...+. ....+.-+....+...+++.|+.... .||+|+.- +++|||+|+ +++||...+|
T Consensus 5 ~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 5 EQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred HHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 445555554432 12223322333355788999987544 69999887 999999998 5788888877
No 383
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.07 E-value=0.2 Score=65.64 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=27.5
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
.+++-|..|+..++..++-+++.|+.|+|||.+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl 384 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM 384 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH
Confidence 579999999986665456779999999999965
No 384
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=0.021 Score=68.17 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=29.5
Q ss_pred cCCCCEEEeCcHHHHHHHHcC---CccccccccccE-EEEecCchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLG---HFHLTELYKINY-LVIDETDRMI 349 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~---~~~~~~l~~i~~-lViDEAh~ll 349 (1493)
..+..|+++|-+.|...+.+. .+.+..|.+..+ .+-|||||+-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 445679999999998777543 333444555555 4669999984
No 385
>KOG0701|consensus
Probab=94.95 E-value=0.016 Score=78.26 Aligned_cols=93 Identities=24% Similarity=0.416 Sum_probs=76.9
Q ss_pred cEEEEecchhhHHHHHHHHHhcC-CCccccccCCC-----------HHHHHHHHHHHhcCCCeEEEEechhhccCCCCCC
Q psy16310 546 RTLVFCNSISSVKRLTQLLTMLK-CSPLPLHASMN-----------QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613 (1493)
Q Consensus 546 ~~IIF~~s~~~a~~L~~~L~~~~-~~~~~lhg~~~-----------~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v 613 (1493)
..|+||+.+..+..+.+++.... ..+..+.|.+. ...+..++..|+...+++|++|.++.+|+|+|.|
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46999999999999998887652 22333444321 2346889999999999999999999999999999
Q ss_pred cEEEEecCCCChHHHHHHHhccccC
Q psy16310 614 EHVIHYHVPRTSEIYIHRSGRTARA 638 (1493)
Q Consensus 614 ~~VI~yd~P~s~~~yiQR~GRagR~ 638 (1493)
+.|+.++.|.....|+|+.||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999995444
No 386
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.94 E-value=0.28 Score=64.33 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHH
Q psy16310 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 158 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~ 205 (1493)
+++..+......++ .+++-|.+++..++.+++-+++.++.|+|||.+
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl 384 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM 384 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH
Confidence 44444443333444 589999999986554456788999999999976
No 387
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.84 E-value=0.2 Score=63.50 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=46.5
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhh
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1493)
.++|+.++..++ .++-+++.|+.|+|||.+..- ++..+....
T Consensus 147 ~~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~------------------------------------ 188 (586)
T TIGR01447 147 QNWQKVAVALAL-KSNFSLITGGPGTGKTTTVAR-LLLALVKQS------------------------------------ 188 (586)
T ss_pred cHHHHHHHHHHh-hCCeEEEEcCCCCCHHHHHHH-HHHHHHHhc------------------------------------
Confidence 378999997555 567899999999999986322 222222100
Q ss_pred cccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 255 KTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 255 ~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
....+.++++.+||---|..+.+.+...
T Consensus 189 ~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 189 PKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 0001246999999998888877766543
No 388
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=94.83 E-value=0.057 Score=63.70 Aligned_cols=69 Identities=22% Similarity=0.110 Sum_probs=50.4
Q ss_pred CcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhh
Q psy16310 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870 (1493)
Q Consensus 791 pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (1493)
+|+-|.++|.. ....++|.|..|||||.+.+.-++..+....
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----------------------------------- 42 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----------------------------------- 42 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----------------------------------
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----------------------------------
Confidence 47889999963 4569999999999999986655554443221
Q ss_pred hccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 871 KKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 871 ~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
..+.++|+|++|+..|..+...+...+
T Consensus 43 ---~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 43 ---VPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp ---STGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred ---CChHHheecccCHHHHHHHHHHHHHhc
Confidence 233459999999999999999888854
No 389
>PRK08181 transposase; Validated
Probab=94.80 E-value=0.19 Score=57.15 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.1
Q ss_pred hccCCcEEEEccCCCcchhHhh
Q psy16310 803 LLARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~ 824 (1493)
+..+++++++||+|+|||..+.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHH
Confidence 3467899999999999996544
No 390
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=94.79 E-value=0.064 Score=63.27 Aligned_cols=125 Identities=18% Similarity=0.102 Sum_probs=71.9
Q ss_pred ChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhh
Q psy16310 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 253 (1493)
Q Consensus 174 pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1493)
+++-|.+++. . ...+++|.|..|||||.+.+--++..+....
T Consensus 1 l~~eQ~~~i~-~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----------------------------------- 42 (315)
T PF00580_consen 1 LTDEQRRIIR-S--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----------------------------------- 42 (315)
T ss_dssp S-HHHHHHHH-S---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----------------------------------
T ss_pred CCHHHHHHHh-C--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----------------------------------
Confidence 4788999996 3 3569999999999999986655555443211
Q ss_pred hcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccc
Q psy16310 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333 (1493)
Q Consensus 254 ~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~ 333 (1493)
....++|+|++|+..|..+...+.......... ................+-|+|-..+..-+-........
T Consensus 43 ---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~ 113 (315)
T PF00580_consen 43 ---VPPERILVLTFTNAAAQEMRERIRELLEEEQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG 113 (315)
T ss_dssp ---STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT
T ss_pred ---CChHHheecccCHHHHHHHHHHHHHhcCccccc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhh
Confidence 223459999999999999988887753211100 00000111111223468889987776544322211111
Q ss_pred cccccEEEEecCc
Q psy16310 334 LYKINYLVIDETD 346 (1493)
Q Consensus 334 l~~i~~lViDEAh 346 (1493)
+ .-.+-++|+..
T Consensus 114 ~-~~~~~i~~~~~ 125 (315)
T PF00580_consen 114 I-DPNFEILDEEE 125 (315)
T ss_dssp S-HTTTEEECHHH
T ss_pred c-cccceeecchh
Confidence 1 12456777776
No 391
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.78 E-value=0.26 Score=62.62 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=47.3
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhh
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1493)
.++|+.|+-.++ .++-+++.|+.|+|||.+..- ++..+...
T Consensus 154 ~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~~-ll~~l~~~------------------------------------- 194 (615)
T PRK10875 154 VDWQKVAAAVAL-TRRISVISGGPGTGKTTTVAK-LLAALIQL------------------------------------- 194 (615)
T ss_pred CHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHH-HHHHHHHh-------------------------------------
Confidence 589999997555 557899999999999986322 22222110
Q ss_pred cccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 255 KTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 255 ~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
......++++++||.--|..+.+.+...
T Consensus 195 ~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 195 ADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred cCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 0012356899999999998887766543
No 392
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.76 E-value=0.21 Score=59.61 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=27.1
Q ss_pred cceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
.+.++|++|++.++... ...+..+...+.... ++.-.++.+|||....
T Consensus 253 ~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~-~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKD--FMKLAEMKELLNACG-RDAEFHLAVSSTTKTS 300 (388)
T ss_pred CCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcC-CCCeEEEEEcCCCCHH
Confidence 35689999999986532 112333333332111 1223567899998743
No 393
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.56 E-value=0.032 Score=66.62 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=44.2
Q ss_pred cCCCcEEEECcHHHHHHHHhC---cCccccccceeEE-EecccchhccCCC---------hhHHHHHHHHhcccCCCCCc
Q psy16310 924 NKCPHILVATPGRLWEFIQLG---HFHLTELYKINYL-VIDETDRMIESGH---------FPELKNILDRVTMTETSQPR 990 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~---~~~~~~l~~l~~l-VlDEah~ll~~~~---------~~~l~~il~~l~~~~~~~~~ 990 (1493)
..+..|.++|.+.|...+.+. ...+.+|.+..+| +-|||||+-...- ...+...+... ....+.-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la--~~~nkd~ 156 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLA--LEQNKDN 156 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHH--HhcCCCc
Confidence 345689999999988776433 3444556666654 6699999843211 11222222111 1223445
Q ss_pred eEEEEeccccc
Q psy16310 991 QTFVFSATLTH 1001 (1493)
Q Consensus 991 q~ll~SATl~~ 1001 (1493)
-++.||||.|.
T Consensus 157 ~~lef~at~~k 167 (812)
T COG3421 157 LLLEFSATIPK 167 (812)
T ss_pred eeehhhhcCCc
Confidence 56779999983
No 394
>PRK06526 transposase; Provisional
Probab=94.45 E-value=0.12 Score=58.38 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=18.7
Q ss_pred hccCCcEEEEccCCCcchhHhhH
Q psy16310 803 LLARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~l 825 (1493)
+..+.+++++||+|+|||..+..
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHH
Confidence 34678999999999999976543
No 395
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.34 E-value=0.21 Score=57.02 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=34.9
Q ss_pred CCCCCCcHHHHhhHHHhhccCC-cEEEEccCCCcchhHhhHHHHHHHhh
Q psy16310 786 KGFKTPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVN 833 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~-dvlv~apTGsGKTla~~lpil~~l~~ 833 (1493)
.|+.--.-.|.-|+..++...- =|.+.++-|||||+.++.+.+...+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e 272 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE 272 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH
Confidence 3666667789999974443322 25678999999999988888877754
No 396
>PRK08181 transposase; Validated
Probab=94.30 E-value=0.27 Score=55.81 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=18.6
Q ss_pred hccCCcEEEEccCCCchhHHHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~~l 208 (1493)
+..+++++++||+|+|||..+..
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAA 125 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHH
Confidence 34678999999999999976543
No 397
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.29 E-value=0.44 Score=63.46 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=28.6
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHH
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~ 205 (1493)
.|+ .+++-|.+++..++.++.-+++.++.|+|||.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~ 378 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM 378 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH
Confidence 454 699999999985554344578999999999986
No 398
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.26 E-value=0.22 Score=66.22 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=28.5
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
.|+ .+++-|.+++..++....-++++|+.|+|||.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~ 378 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM 378 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH
Confidence 454 589999999986664444578999999999976
No 399
>KOG1805|consensus
Probab=94.25 E-value=0.17 Score=64.31 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHH
Q psy16310 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 852 (1493)
Q Consensus 773 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 852 (1493)
..+.|.+.+. -+..+...|++|+-.++....-.++.|=+|||||...... +..++.
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~------------------- 711 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVA------------------- 711 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHH-------------------
Confidence 4566666553 3346688899999988888777899999999999764433 232321
Q ss_pred HHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEc---------------CCCHH
Q psy16310 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG---------------GMSTE 917 (1493)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~g---------------g~~~~ 917 (1493)
.+.++|..+-|..=+.-+.-.++.+. +.+.-+-. +.+..
T Consensus 712 ----------------------~gkkVLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~k 765 (1100)
T KOG1805|consen 712 ----------------------LGKKVLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEK 765 (1100)
T ss_pred ----------------------cCCeEEEEehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchh
Confidence 23468888888877776666665543 32222211 11111
Q ss_pred --HHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc
Q psy16310 918 --KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 967 (1493)
Q Consensus 918 --~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~ 967 (1493)
......-+.+.||.+|---+.+.+. ..+++++.|+|||-.++.
T Consensus 766 s~~~l~~~~~~~~IVa~TClgi~~plf-------~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 766 SYADLKKFLDQTSIVACTCLGINHPLF-------VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred hHHHHHHHhCCCcEEEEEccCCCchhh-------hccccCEEEEcccccccc
Confidence 1122233456788888544444332 233579999999998754
No 400
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.14 E-value=0.15 Score=58.07 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=34.8
Q ss_pred CCCCCChHHHHhhhhhhhccC-C-cEEEEccCCCchhHHHHHHHHHHHHh
Q psy16310 169 KGFKTPTKIQSMVMPSALLAR-K-DIVGAAETGSGKTLAFGIPILTGIVN 216 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~-~-dviv~apTGSGKTl~~~lpil~~l~~ 216 (1493)
.|+..-.-.|.-|+. +|+.. - =|.+.++-|||||+.++...+...+.
T Consensus 224 wGi~prn~eQ~~ALd-lLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e 272 (436)
T COG1875 224 WGIRPRNAEQRVALD-LLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE 272 (436)
T ss_pred hccCcccHHHHHHHH-HhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH
Confidence 478777778888887 55442 2 25678999999999988887766653
No 401
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.06 E-value=0.26 Score=50.21 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCcchhH
Q psy16310 806 RKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla 822 (1493)
+..+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999964
No 402
>PRK04296 thymidine kinase; Provisional
Probab=94.04 E-value=0.074 Score=57.46 Aligned_cols=19 Identities=16% Similarity=-0.102 Sum_probs=14.7
Q ss_pred cEEEEccCCCcchhHhhHH
Q psy16310 808 DIVGAAETGSGKTLAFGIP 826 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~lp 826 (1493)
=.++.||+|+|||.+.+--
T Consensus 4 i~litG~~GsGKTT~~l~~ 22 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQR 22 (190)
T ss_pred EEEEECCCCCHHHHHHHHH
Confidence 4688999999999765433
No 403
>KOG1805|consensus
Probab=94.01 E-value=0.21 Score=63.54 Aligned_cols=137 Identities=16% Similarity=0.119 Sum_probs=85.4
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHH
Q psy16310 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 235 (1493)
Q Consensus 156 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 235 (1493)
..+.|.+.+. -+..+..-|++|+-.++....-.+|.|=+|+|||..-+..+ ..|+
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~-------------------- 710 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILV-------------------- 710 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHH--------------------
Confidence 3455555553 23457888999998888877778899999999998744432 2222
Q ss_pred HHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEE---------------EcCCC--
Q psy16310 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV---------------VGGMS-- 298 (1493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~---------------~G~~~-- 298 (1493)
..+.++|..+-|..-+.-+.-.+..+. +.+.-+ +.+++
T Consensus 711 ---------------------~~gkkVLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~k 765 (1100)
T KOG1805|consen 711 ---------------------ALGKKVLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEK 765 (1100)
T ss_pred ---------------------HcCCeEEEEehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchh
Confidence 245679999988887776655554432 221111 11111
Q ss_pred HHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhh
Q psy16310 299 TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 299 ~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll 349 (1493)
.-.......+.+.|+.||--.+.+.|.. ..++++.|||||-.++
T Consensus 766 s~~~l~~~~~~~~IVa~TClgi~~plf~-------~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 766 SYADLKKFLDQTSIVACTCLGINHPLFV-------NRQFDYCIIDEASQIL 809 (1100)
T ss_pred hHHHHHHHhCCCcEEEEEccCCCchhhh-------ccccCEEEEccccccc
Confidence 1112223345578999987666443322 3367999999999874
No 404
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=93.93 E-value=0.57 Score=62.80 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 774 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
++++..+......+ ..+++-|..++..+...++-++++|+-|+|||.+
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~ 413 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM 413 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH
Confidence 45555555544444 3689999999986554556789999999999976
No 405
>PRK06526 transposase; Provisional
Probab=93.82 E-value=0.21 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=19.0
Q ss_pred hccCCcEEEEccCCCchhHHHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~~l 208 (1493)
+..+.+++++||+|+|||..+.-
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHH
Confidence 44678999999999999987544
No 406
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.79 E-value=0.13 Score=61.64 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=25.3
Q ss_pred CcHHHHhhHHHhh-----ccCCcEEEEccCCCcchhH
Q psy16310 791 PTKIQSMVMPSAL-----LARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 791 pt~iQ~~~i~~~l-----~~~~dvlv~apTGsGKTla 822 (1493)
+++-|..++..++ ..+..+++.|+-|+|||..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l 38 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL 38 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH
Confidence 5677888876431 5678999999999999965
No 407
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=93.68 E-value=0.81 Score=61.40 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=36.7
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHH
Q psy16310 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 156 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~ 205 (1493)
.++++..+......++ .+++-|.+++..+...++-+++.|+-|+|||.+
T Consensus 365 ~~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~ 413 (1102)
T PRK13826 365 HGVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM 413 (1102)
T ss_pred CCCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH
Confidence 3566666665555554 699999999985444456788999999999986
No 408
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.32 E-value=0.16 Score=59.22 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=34.2
Q ss_pred HHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHH
Q psy16310 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 162 l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~ 205 (1493)
.+..|.+.|+ +++.|.+.+..++..+.+++++|+||||||..
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 164 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL 164 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 4555666676 56788888887888899999999999999954
No 409
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.30 E-value=0.8 Score=54.81 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
+..+++++|||+|||.+..-
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999987543
No 410
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.13 E-value=0.18 Score=58.84 Aligned_cols=48 Identities=27% Similarity=0.326 Sum_probs=35.5
Q ss_pred HHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHH
Q psy16310 780 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 830 (1493)
Q Consensus 780 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~ 830 (1493)
+..|...|+ +++.|...+..++..+.+++++|+||||||.. +-.++..
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~ 171 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINE 171 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHh
Confidence 445555665 45778888877788889999999999999943 4444443
No 411
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.04 E-value=0.99 Score=50.54 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchhHHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~l 208 (1493)
..+++++++|+|||..+..
T Consensus 100 ~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999987543
No 412
>PRK14974 cell division protein FtsY; Provisional
Probab=93.03 E-value=0.83 Score=53.59 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=30.7
Q ss_pred ceeEEEecccchhc-cCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 953 KINYLVIDETDRMI-ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 953 ~l~~lVlDEah~ll-~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
..++|++|.|.++. +......+..+...+ .+...++.++||...+..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~-----~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVT-----KPDLVIFVGDALAGNDAV 269 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhh-----CCceEEEeeccccchhHH
Confidence 35789999999875 233455666665544 244567788998765443
No 413
>PRK12377 putative replication protein; Provisional
Probab=92.93 E-value=0.67 Score=52.02 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
..++++.||+|+|||..+
T Consensus 101 ~~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA 118 (248)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 368999999999999654
No 414
>KOG0701|consensus
Probab=92.87 E-value=0.06 Score=73.10 Aligned_cols=94 Identities=23% Similarity=0.427 Sum_probs=77.2
Q ss_pred cEEEEecchhhHHHHHHHHHhcCC-CccccccCCC-----------HHHHHHHHHHHhcCCCCeEEeehhhhccccCCCc
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTMLKC-SPLPLHASMN-----------QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 1146 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~m~-----------~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v 1146 (1493)
..|+||+.+..+..+.+.+..... .+..+-|.+. +..+..++..|....+++|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 468999999999999998877632 2222333222 2235789999999999999999999999999999
Q ss_pred cEEEEecCCCChhHHHHHHhccCCCC
Q psy16310 1147 EHVIHYHVPRTSEIYIHRSGRTARAN 1172 (1493)
Q Consensus 1147 ~~VI~~d~p~s~~~yiqr~GR~gR~g 1172 (1493)
+.|+.++.|.....|+|+.||+-+++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999987753
No 415
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.76 E-value=0.92 Score=50.77 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=27.2
Q ss_pred cceeEEEecccchhccCCChh-HHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 952 YKINYLVIDETDRMIESGHFP-ELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll~~~~~~-~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|||||++......+.. .+..|+..-. .....+++.|---+..+
T Consensus 161 ~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 161 SNVDLLVIDEIGVQTESRYEKVIINQIVDRRS----SSKRPTGMLTNSNMEEM 209 (244)
T ss_pred ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHH----hCCCCEEEeCCCCHHHH
Confidence 357899999999865433322 3444554421 23456777665544443
No 416
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=92.68 E-value=0.2 Score=60.12 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=25.7
Q ss_pred ChHHHHhhhhhhh-----ccCCcEEEEccCCCchhHHH
Q psy16310 174 PTKIQSMVMPSAL-----LARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 174 pt~iQ~~~i~~~l-----~~~~dviv~apTGSGKTl~~ 206 (1493)
+++-|+.++...+ ..+.++++.|+-|+|||..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH
Confidence 5677888876331 56789999999999999873
No 417
>PF13871 Helicase_C_4: Helicase_C-like
Probab=92.51 E-value=0.29 Score=55.12 Aligned_cols=64 Identities=19% Similarity=0.349 Sum_probs=51.8
Q ss_pred HHHHHHhcCCCCeEEeehhhhccccCCC--------ccEEEEecCCCChhHHHHHHhccCCCCCC-CeEEEEe
Q psy16310 1118 KNLDRFRDQNNSILLATDVAARGLDIPG--------IEHVIHYHVPRTSEIYIHRSGRTARANNE-GLTLVLI 1181 (1493)
Q Consensus 1118 ~~~~~F~~g~~~VLVaTdv~~~GiDip~--------v~~VI~~d~p~s~~~yiqr~GR~gR~g~~-G~~i~l~ 1181 (1493)
...+.|.+|+..|+|.|++++.||-+.+ -++-|...+|++....+|..||+-|.|+. +-.|.++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEe
Confidence 4567899999999999999999998753 23456688999999999999999999873 3334444
No 418
>PRK04296 thymidine kinase; Provisional
Probab=92.45 E-value=0.13 Score=55.43 Aligned_cols=19 Identities=21% Similarity=-0.031 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~l 208 (1493)
.=.++.+|+|+|||..++-
T Consensus 3 ~i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEEECCCCCHHHHHHHH
Confidence 3467899999999987443
No 419
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.27 E-value=0.75 Score=53.97 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.+.++++.||||+|||..+
T Consensus 182 ~~~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS 200 (329)
T ss_pred cCCcEEEECCCCCcHHHHH
Confidence 3579999999999999754
No 420
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.25 E-value=0.45 Score=48.41 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
+..+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999753
No 421
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.21 E-value=1.1 Score=46.52 Aligned_cols=17 Identities=41% Similarity=0.251 Sum_probs=13.8
Q ss_pred EEEEccCCCcchhHhhH
Q psy16310 809 IVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 809 vlv~apTGsGKTla~~l 825 (1493)
+++.||+|+|||.....
T Consensus 2 ~~i~G~~G~GKT~l~~~ 18 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ 18 (165)
T ss_pred eeEeCCCCCCHHHHHHH
Confidence 57899999999976443
No 422
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.18 E-value=0.71 Score=54.17 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.+.+++++||||+|||..+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH
Confidence 35799999999999998643
No 423
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.12 E-value=0.35 Score=56.33 Aligned_cols=40 Identities=35% Similarity=0.337 Sum_probs=33.1
Q ss_pred HHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHH
Q psy16310 164 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 164 ~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~ 205 (1493)
..+...|. +++.|...+..++..+.+++++|+||||||..
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl 160 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL 160 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 44556666 66788888888888889999999999999986
No 424
>PRK12377 putative replication protein; Provisional
Probab=92.02 E-value=1.1 Score=50.33 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
..++++.||+|+|||..+..
T Consensus 101 ~~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999986443
No 425
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.95 E-value=0.29 Score=58.03 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCcchhHhhHHH
Q psy16310 805 ARKDIVGAAETGSGKTLAFGIPI 827 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~lpi 827 (1493)
.+..++++||||+|||......+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA 158 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLA 158 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999998754433
No 426
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.95 E-value=0.56 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=18.3
Q ss_pred ccCCcEEEEccCCCcchhHhhH
Q psy16310 804 LARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~~l 825 (1493)
..+.++++.||+|+|||..+..
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHH
Confidence 3678999999999999977543
No 427
>PRK08727 hypothetical protein; Validated
Probab=91.88 E-value=0.57 Score=52.45 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=14.2
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
.-+++.||+|+|||...
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999653
No 428
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.83 E-value=0.46 Score=55.18 Aligned_cols=43 Identities=37% Similarity=0.428 Sum_probs=33.2
Q ss_pred HHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 162 l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
-+..|.+.|. +++-|.+.+..++..+.+++++|+||||||...
T Consensus 107 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 107 TLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA 149 (299)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH
Confidence 3455555665 556777777778888889999999999999863
No 429
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.83 E-value=0.4 Score=55.84 Aligned_cols=46 Identities=30% Similarity=0.322 Sum_probs=33.9
Q ss_pred HHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHH
Q psy16310 782 ALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 830 (1493)
Q Consensus 782 ~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~ 830 (1493)
.+...|. .++.|...+..++..+.+++++|+||||||.. +-.++..
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~ 167 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAE 167 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHH
Confidence 3445555 46788888887888889999999999999965 3334443
No 430
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=91.76 E-value=0.73 Score=57.24 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=25.9
Q ss_pred ceeEEEecccchhccCC-ChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 953 KINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~-~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
.+++|||||+|.+.... ....+..++..+.. ...++++.|...|..
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~----~~~~iiits~~~p~~ 257 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHE----AGKQIVLTSDRPPKE 257 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH----CCCcEEEECCCCHHH
Confidence 46789999999875432 12345555555432 234555555444433
No 431
>PRK14974 cell division protein FtsY; Provisional
Probab=91.69 E-value=1.5 Score=51.54 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~ 207 (1493)
.-+++++++|+|||....
T Consensus 141 ~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 457889999999998643
No 432
>PRK08727 hypothetical protein; Validated
Probab=91.61 E-value=0.85 Score=51.06 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~ 207 (1493)
..++++||+|+|||....
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358999999999997543
No 433
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.57 E-value=0.3 Score=61.10 Aligned_cols=72 Identities=14% Similarity=0.002 Sum_probs=50.5
Q ss_pred HHHHhhHHHhhc----c----CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 793 KIQSMVMPSALL----A----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 793 ~iQ~~~i~~~l~----~----~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
|+|.-.+-.++- . -+.+++.-|=|.|||......++..++-.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~------------------------------ 50 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD------------------------------ 50 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC------------------------------
Confidence 567766654331 1 14688888999999977655444444221
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 902 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~ 902 (1493)
...+..+++.+++++-|..+++.+..+...
T Consensus 51 --------g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 51 --------GEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred --------CccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 234567999999999999999999887654
No 434
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.55 E-value=1.9 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGIPI 210 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~lpi 210 (1493)
.+.+++++|||+|||......+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 3578899999999998754443
No 435
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.44 E-value=0.6 Score=53.75 Aligned_cols=47 Identities=26% Similarity=0.185 Sum_probs=28.6
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhH
Q psy16310 778 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 778 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~l 825 (1493)
++.++|...|..+..|.--..+ --+..|.-+++.|++|+|||....-
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~ 49 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLRE 49 (271)
T ss_pred hhhccccccCCCCCcceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHH
Confidence 3455555444444333333333 2455678899999999999975443
No 436
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.43 E-value=0.17 Score=51.13 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCcchhHhh
Q psy16310 806 RKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~ 824 (1493)
+..+++.||+|+|||....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4578999999999998643
No 437
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.13 E-value=0.88 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCCchhHHHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFGIP 209 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~lp 209 (1493)
.+.++++.||+|+|||..++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai 125 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAI 125 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHH
Confidence 6789999999999999876543
No 438
>PRK08116 hypothetical protein; Validated
Probab=91.12 E-value=1.9 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFGIPILTGI 214 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~lpil~~l 214 (1493)
..++++|++|+|||..+.. +.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l 138 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANEL 138 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHH
Confidence 3499999999999987553 44544
No 439
>PRK06893 DNA replication initiation factor; Validated
Probab=91.07 E-value=0.62 Score=52.00 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=27.7
Q ss_pred ceeEEEecccchhccCC-ChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 953 KINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~-~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
+.++|||||+|.+.... +...+..++..+. ..+.+++++|++.++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~----~~~~~illits~~~p 136 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIK----EQGKTLLLISADCSP 136 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHH----HcCCcEEEEeCCCCh
Confidence 56899999999875332 2334555555543 123456778777653
No 440
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.05 E-value=0.8 Score=50.65 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=30.9
Q ss_pred cceeEEEecccchhccCC-ChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 952 YKINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll~~~-~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
...++|+||..|.+.... ....+..++..+. ..+.++++.|...|..+
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~----~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLI----ESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH----HTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHH----hhCCeEEEEeCCCCccc
Confidence 357899999999876532 2344555555553 24567888887877554
No 441
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=91.03 E-value=0.56 Score=61.92 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=71.4
Q ss_pred CCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchh
Q psy16310 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1493)
..+++-|.+++. . ....++|.|..|||||.+-.--+.+.+ ..
T Consensus 3 ~~Ln~~Q~~av~-~--~~g~~lV~AgaGSGKT~~L~~Ria~Li-~~---------------------------------- 44 (715)
T TIGR01075 3 DGLNDKQREAVA-A--PPGNLLVLAGAGSGKTRVLTHRIAWLL-SV---------------------------------- 44 (715)
T ss_pred cccCHHHHHHHc-C--CCCCEEEEecCCCCHHHHHHHHHHHHH-Hc----------------------------------
Confidence 458999999985 3 245899999999999998444333322 11
Q ss_pred hhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccc
Q psy16310 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331 (1493)
Q Consensus 252 ~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~ 331 (1493)
.+.+..++|+|+.|+..|..+.+.+..+... ....+.|+|-..+..-+-..+...
T Consensus 45 ---~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~----------------------~~~~~~i~TfHs~~~~iLr~~~~~ 99 (715)
T TIGR01075 45 ---ENASPHSIMAVTFTNKAAAEMRHRIGALLGT----------------------SARGMWIGTFHGLAHRLLRAHHLD 99 (715)
T ss_pred ---CCCCHHHeEeeeccHHHHHHHHHHHHHHhcc----------------------cccCcEEEcHHHHHHHHHHHHHHH
Confidence 0112345999999999999999988876421 012578899887764332222111
Q ss_pred cccccccEEEEecCchh
Q psy16310 332 TELYKINYLVIDETDRM 348 (1493)
Q Consensus 332 ~~l~~i~~lViDEAh~l 348 (1493)
..+ .-.+-|+|+.+..
T Consensus 100 ~g~-~~~f~i~d~~d~~ 115 (715)
T TIGR01075 100 AGL-PQDFQILDSDDQL 115 (715)
T ss_pred hCC-CCCCeecCHHHHH
Confidence 111 1134677887653
No 442
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.99 E-value=0.65 Score=53.89 Aligned_cols=41 Identities=39% Similarity=0.472 Sum_probs=31.1
Q ss_pred HHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 780 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 780 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
+..|...|. +++-|...+..++..+.+++++|+||||||..
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 148 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL 148 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 444555554 45667777777777888999999999999975
No 443
>PRK06893 DNA replication initiation factor; Validated
Probab=90.95 E-value=0.82 Score=51.05 Aligned_cols=18 Identities=17% Similarity=-0.031 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~ 207 (1493)
..++++||+|+|||....
T Consensus 40 ~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357899999999997643
No 444
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=90.92 E-value=1 Score=55.55 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=27.3
Q ss_pred cceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 952 YKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
.++++|||||+|.+... .....+..++..+. ....|+++.|-..|.
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~----~~~k~iIltsd~~P~ 251 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI----ENDKQLFFSSDKSPE 251 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHH----HcCCcEEEECCCCHH
Confidence 35689999999976432 22344555555553 233466666655553
No 445
>PRK11054 helD DNA helicase IV; Provisional
Probab=90.89 E-value=0.77 Score=59.46 Aligned_cols=88 Identities=18% Similarity=0.038 Sum_probs=61.2
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
.-..+++-|.+++- . ...+++|.|..|||||.+.+--+...+...
T Consensus 193 e~~~L~~~Q~~av~-~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-------------------------------- 237 (684)
T PRK11054 193 ESSPLNPSQARAVV-N--GEDSLLVLAGAGSGKTSVLVARAGWLLARG-------------------------------- 237 (684)
T ss_pred cCCCCCHHHHHHHh-C--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC--------------------------------
Confidence 33579999999984 2 335789999999999998544433323210
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHH
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~ 322 (1493)
...+-++|+|+.|+..|..+.+.+...... ..|-|+|--.|..
T Consensus 238 ------~~~~~~IL~ltft~~AA~em~eRL~~~lg~------------------------~~v~v~TFHSlal 280 (684)
T PRK11054 238 ------QAQPEQILLLAFGRQAAEEMDERIRERLGT------------------------EDITARTFHALAL 280 (684)
T ss_pred ------CCCHHHeEEEeccHHHHHHHHHHHHHhcCC------------------------CCcEEEeHHHHHH
Confidence 112336999999999999998888765310 2688888887764
No 446
>PRK11054 helD DNA helicase IV; Provisional
Probab=90.86 E-value=0.74 Score=59.60 Aligned_cols=71 Identities=18% Similarity=0.102 Sum_probs=50.5
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..+++-|..|+- . ...+++|.|..|||||.+.+--+. .++...
T Consensus 195 ~~L~~~Q~~av~--~-~~~~~lV~agaGSGKT~vl~~r~a-yLl~~~--------------------------------- 237 (684)
T PRK11054 195 SPLNPSQARAVV--N-GEDSLLVLAGAGSGKTSVLVARAG-WLLARG--------------------------------- 237 (684)
T ss_pred CCCCHHHHHHHh--C-CCCCeEEEEeCCCCHHHHHHHHHH-HHHHhC---------------------------------
Confidence 468999999984 2 335789999999999988544333 222211
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
...+.++|+|+.|+..|..+.+.+....
T Consensus 238 ----~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 238 ----QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred ----CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 1223469999999999999988887653
No 447
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.78 E-value=0.5 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCCchhHHHHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFGIPI 210 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~lpi 210 (1493)
.+..+++++|||+|||......+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA 158 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLA 158 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999865443
No 448
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.69 E-value=0.27 Score=49.70 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
+..+++.+|+|+|||.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 46789999999999997543
No 449
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=90.64 E-value=1.1 Score=51.12 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.5
Q ss_pred CcEEEEccCCCcchhHhh
Q psy16310 807 KDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~ 824 (1493)
.++++.||+|+|||.++-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 579999999999997654
No 450
>PRK08116 hypothetical protein; Validated
Probab=90.62 E-value=2.2 Score=48.81 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=17.7
Q ss_pred CcEEEEccCCCcchhHhhHHHHHHH
Q psy16310 807 KDIVGAAETGSGKTLAFGIPILTGI 831 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~lpil~~l 831 (1493)
..+++.|++|+|||..+. .+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l 138 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANEL 138 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHH
Confidence 349999999999997644 344444
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=90.59 E-value=2.9 Score=43.39 Aligned_cols=18 Identities=39% Similarity=0.194 Sum_probs=14.6
Q ss_pred EEEEccCCCchhHHHHHH
Q psy16310 192 IVGAAETGSGKTLAFGIP 209 (1493)
Q Consensus 192 viv~apTGSGKTl~~~lp 209 (1493)
++++|++|+|||......
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 678999999999975443
No 452
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=90.55 E-value=0.78 Score=54.02 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
++-+.++||||.|||..-
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 678999999999999763
No 453
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=90.49 E-value=4.4 Score=52.34 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=17.6
Q ss_pred ceeEEEecccchhccCCChhHHHHHHHH
Q psy16310 953 KINYLVIDETDRMIESGHFPELKNILDR 980 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~~~~l~~il~~ 980 (1493)
.+.+|||||+|.|... ....+..++..
T Consensus 869 ~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 869 NVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred cceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 4568999999998764 22334445443
No 454
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.35 E-value=0.52 Score=47.24 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=13.4
Q ss_pred eeEEEecccchhccCC
Q psy16310 954 INYLVIDETDRMIESG 969 (1493)
Q Consensus 954 l~~lVlDEah~ll~~~ 969 (1493)
-.+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4789999999987665
No 455
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=90.25 E-value=1.2 Score=54.54 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.3
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
..+++.||+|+|||...
T Consensus 137 n~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL 153 (405)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 35789999999999764
No 456
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.18 E-value=1.5 Score=48.45 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhHH
Q psy16310 191 DIVGAAETGSGKTLA 205 (1493)
Q Consensus 191 dviv~apTGSGKTl~ 205 (1493)
-++++||+|+|||-.
T Consensus 36 ~l~l~G~~G~GKTHL 50 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL 50 (219)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred ceEEECCCCCCHHHH
Confidence 488999999999984
No 457
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=90.18 E-value=0.43 Score=59.61 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=50.4
Q ss_pred HHHHhhhhhhhcc---------CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 176 KIQSMVMPSALLA---------RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 176 ~iQ~~~i~~~l~~---------~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
|+|.-.+- .+.+ -+.+++.-|=|.|||......++.++.-.
T Consensus 1 PwQ~fi~~-~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----------------------------- 50 (477)
T PF03354_consen 1 PWQKFILR-SIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----------------------------- 50 (477)
T ss_pred CcHHHHHH-HHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----------------------------
Confidence 56776664 3322 23578888999999997666666555321
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCC
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 285 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~ 285 (1493)
+..+..+++.+++++-|..+++.+..+...
T Consensus 51 ---------g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 51 ---------GEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred ---------CccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 234567999999999999999988887653
No 458
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=90.18 E-value=1.6 Score=54.22 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHH
Q psy16310 190 KDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~ 206 (1493)
..++++||+|+|||...
T Consensus 149 ~~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL 165 (450)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999864
No 459
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.13 E-value=0.73 Score=51.48 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=31.7
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHh
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~ 832 (1493)
..+.+|+++++|+.+.+.+. ....=++|.||||||||.. +..++.++.
T Consensus 103 ~~i~~~e~LglP~i~~~~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId~iN 150 (353)
T COG2805 103 SKIPTLEELGLPPIVRELAE-------------------SPRGLILVTGPTGSGKSTT-LAAMIDYIN 150 (353)
T ss_pred ccCCCHHHcCCCHHHHHHHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHh
Confidence 44567888888876654221 1223688999999999876 445666663
No 460
>PF13871 Helicase_C_4: Helicase_C-like
Probab=90.11 E-value=0.79 Score=51.70 Aligned_cols=66 Identities=18% Similarity=0.331 Sum_probs=52.3
Q ss_pred HHHHHHhcCCCeEEEEechhhccCCCCC--------CcEEEEecCCCChHHHHHHHhccccCCCC-CeEEEEecC
Q psy16310 585 KNLDRFRDQNNSILLATDVAARGLDIPG--------IEHVIHYHVPRTSEIYIHRSGRTARANNE-GLTVVLIES 650 (1493)
Q Consensus 585 ~vl~~Fr~g~~~VLVaTdv~~rGlDip~--------v~~VI~yd~P~s~~~yiQR~GRagR~g~~-G~~i~l~~~ 650 (1493)
...+.|.+|+..|+|.|+.++.||-+.. -++-|...+|++....+|..||+-|.|.. .-.|.++..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec
Confidence 4567899999999999999999997743 22446788999999999999999998864 444554433
No 461
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.06 E-value=1.2 Score=54.10 Aligned_cols=106 Identities=15% Similarity=0.067 Sum_probs=67.7
Q ss_pred ccCCCHH-HHHHHHHCCCCCChH-------HHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 155 KFNIPET-IIRALYQKGFKTPTK-------IQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 155 ~l~l~~~-l~~~l~~~g~~~pt~-------iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
+.++... |+.+|.+.--.+++. -|-+.|. -..++-++|+|..|||||.+++--+...+++.+..
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR--~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~------ 257 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIR--FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP------ 257 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHh--ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc------
Confidence 3445555 446666654333333 2444443 12356789999999999999765555555443211
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
... .-+||+.|.+-+..=+.+++-+++..
T Consensus 258 -----------------------------l~~-k~vlvl~PN~vFleYis~VLPeLGe~--------------------- 286 (747)
T COG3973 258 -----------------------------LQA-KPVLVLGPNRVFLEYISRVLPELGEE--------------------- 286 (747)
T ss_pred -----------------------------ccc-CceEEEcCcHHHHHHHHHhchhhccC---------------------
Confidence 111 22999999999999888888777532
Q ss_pred cCCCCEEEeCcHHHHHH
Q psy16310 307 NKCPHILVATPGRLWEF 323 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~ 323 (1493)
.|+..|++-+.-.
T Consensus 287 ----~V~q~Tf~e~a~~ 299 (747)
T COG3973 287 ----GVVQETFEEWALA 299 (747)
T ss_pred ----ceeeccHHHHHHH
Confidence 6888898877443
No 462
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=90.00 E-value=0.76 Score=60.68 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=51.6
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..++|-|.+++.. ....++|.|..|||||.+..--+.. ++...
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~-Li~~~--------------------------------- 45 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAW-LLSVE--------------------------------- 45 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHH-HHHcC---------------------------------
Confidence 4589999999852 3358999999999999884433333 32210
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
..++.++|+|+.|+..|..+.+.+..+.
T Consensus 46 ----~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 46 ----NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ----CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 1233469999999999999999888764
No 463
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=89.98 E-value=1.8 Score=46.48 Aligned_cols=21 Identities=19% Similarity=0.089 Sum_probs=15.9
Q ss_pred EEEEccCCCcchhHhhHHHHH
Q psy16310 809 IVGAAETGSGKTLAFGIPILT 829 (1493)
Q Consensus 809 vlv~apTGsGKTla~~lpil~ 829 (1493)
+++.||+|+|||...+--+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 688999999999865544443
No 464
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=89.86 E-value=1.1 Score=54.18 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=24.5
Q ss_pred ChHHHHhhhhhhhccCCcEEEEccCCCchhHHHH
Q psy16310 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 174 pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~ 207 (1493)
|-......+. ++..++++++++|+|+|||..+.
T Consensus 180 ~e~~le~l~~-~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILK-RLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHH-HHhcCCCEEEECCCCCCHHHHHH
Confidence 3334444554 56678999999999999998754
No 465
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=89.85 E-value=0.61 Score=52.94 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=19.8
Q ss_pred ceeEEEecccchhccCCCh--hHHHHHHHHh
Q psy16310 953 KINYLVIDETDRMIESGHF--PELKNILDRV 981 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~~--~~l~~il~~l 981 (1493)
.+++|||||.|.++..... ..+.+.++.|
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L 175 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFL 175 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHH
Confidence 5789999999999876553 2334444444
No 466
>PRK06921 hypothetical protein; Provisional
Probab=89.82 E-value=1.4 Score=50.37 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.+.++++.|+||+|||..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3578999999999999653
No 467
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=89.63 E-value=0.76 Score=60.64 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=70.7
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+++-|.+++. . ....++|.|..|||||.+-.--+...+ ..
T Consensus 9 ~Ln~~Q~~av~-~--~~g~~lV~AgaGSGKT~vl~~Ria~Li-~~----------------------------------- 49 (721)
T PRK11773 9 SLNDKQREAVA-A--PLGNMLVLAGAGSGKTRVLVHRIAWLM-QV----------------------------------- 49 (721)
T ss_pred hcCHHHHHHHh-C--CCCCEEEEecCCCCHHHHHHHHHHHHH-Hc-----------------------------------
Confidence 58999999985 3 245899999999999998443333222 11
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
.+....++|+|+-|+..|.++.+.+..+... . ...+.|+|-..+..-+-..+....
T Consensus 50 --~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~-----------~-----------~~~~~i~TfHs~~~~iLr~~~~~~ 105 (721)
T PRK11773 50 --ENASPYSIMAVTFTNKAAAEMRHRIEQLLGT-----------S-----------QGGMWVGTFHGLAHRLLRAHWQDA 105 (721)
T ss_pred --CCCChhHeEeeeccHHHHHHHHHHHHHHhcc-----------C-----------CCCCEEEcHHHHHHHHHHHHHHHh
Confidence 0122345999999999999999988876421 0 015788998887654322221111
Q ss_pred ccccccEEEEecCch
Q psy16310 333 ELYKINYLVIDETDR 347 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ 347 (1493)
.+ .-.+-|+|+.+.
T Consensus 106 g~-~~~f~i~d~~d~ 119 (721)
T PRK11773 106 NL-PQDFQILDSDDQ 119 (721)
T ss_pred CC-CCCCeecCHHHH
Confidence 11 123567888764
No 468
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=89.29 E-value=0.65 Score=60.53 Aligned_cols=70 Identities=16% Similarity=0.002 Sum_probs=49.3
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.++|-|.+++.. ....++|.|..|||||.+...-+...+...
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~----------------------------------- 43 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGC----------------------------------- 43 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-----------------------------------
Confidence 378999999852 234889999999999988544444333211
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
...+.++|+|+.|+.-|..+.+.+..+.
T Consensus 44 ---~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 44 ---GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred ---CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 1123458999999999988888887653
No 469
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=89.28 E-value=0.83 Score=51.92 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHH
Q psy16310 190 KDIVGAAETGSGKTLA 205 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~ 205 (1493)
.+++++|+||-|||.+
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 4899999999999995
No 470
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=89.25 E-value=0.78 Score=54.04 Aligned_cols=17 Identities=35% Similarity=0.433 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHH
Q psy16310 189 RKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~ 205 (1493)
++.+.++||||.|||..
T Consensus 203 ~~vi~LVGPTGVGKTTT 219 (407)
T COG1419 203 KRVIALVGPTGVGKTTT 219 (407)
T ss_pred CcEEEEECCCCCcHHHH
Confidence 67889999999999986
No 471
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=89.21 E-value=0.12 Score=54.22 Aligned_cols=85 Identities=19% Similarity=0.173 Sum_probs=31.9
Q ss_pred eEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccE
Q psy16310 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339 (1493)
Q Consensus 260 ~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~ 339 (1493)
.+++|.+|+.+-+..+++.+.......+++....... ............|-+..|..+... -...++
T Consensus 27 ~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~i~f~~Pd~l~~~----------~~~~Dl 93 (177)
T PF05127_consen 27 IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFNKQRIEFVAPDELLAE----------KPQADL 93 (177)
T ss_dssp --EEEE-SS--S-HHHHHCC-----------------------------CCC--B--HHHHCCT--------------SC
T ss_pred ceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccccceEEEECCHHHHhC----------cCCCCE
Confidence 4699999999988887776655444333332000000 000001112346777778776221 113588
Q ss_pred EEEecCchhhhcCChhhHHHHH
Q psy16310 340 LVIDETDRMIESGHFPELKNIL 361 (1493)
Q Consensus 340 lViDEAh~ll~~~~~~~l~~il 361 (1493)
||||||=.+ ..+.+.+++
T Consensus 94 liVDEAAaI----p~p~L~~ll 111 (177)
T PF05127_consen 94 LIVDEAAAI----PLPLLKQLL 111 (177)
T ss_dssp EEECTGGGS-----HHHHHHHH
T ss_pred EEEechhcC----CHHHHHHHH
Confidence 999999865 345555554
No 472
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.16 E-value=1.4 Score=49.13 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCcchhHhh
Q psy16310 805 ARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~ 824 (1493)
.+..+++.||+|+|||..+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999997643
No 473
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.11 E-value=1.3 Score=55.63 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=29.3
Q ss_pred ceeEEEecccchhccCCC-hhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 953 KINYLVIDETDRMIESGH-FPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~-~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
++++||||++|.+..... ...+..++..+. ..+.++++.|-..|..+
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~----e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLH----NANKQIVLSSDRPPKQL 424 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHH----hcCCCEEEecCCChHhh
Confidence 568999999998754332 344556666554 23467777665555443
No 474
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=89.10 E-value=1.8 Score=55.19 Aligned_cols=142 Identities=20% Similarity=0.235 Sum_probs=81.6
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhccCC-cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHH
Q psy16310 163 IRALYQKGFKTPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 241 (1493)
Q Consensus 163 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~-dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1493)
-..+.....+.+..-|.+.+..++..++ -+++.|.=|=|||.+..|.+. .+...
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~------------------------ 258 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARL------------------------ 258 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHh------------------------
Confidence 3445666666666666666665554444 678999999999999887762 22110
Q ss_pred HHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHH
Q psy16310 242 LEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321 (1493)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~ 321 (1493)
....+++|.+||.+-++.++..+.+-....|++-......... ....-.+...|=+-+|....
T Consensus 259 ---------------~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~ 321 (758)
T COG1444 259 ---------------AGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ 321 (758)
T ss_pred ---------------cCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccc--eeeecCCceeEEeeCcchhc
Confidence 1145799999999998888777665544444332222111000 00000011234455555431
Q ss_pred HHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHh
Q psy16310 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 363 (1493)
Q Consensus 322 ~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~ 363 (1493)
. .-++||||||=.+ ..+.+..++..
T Consensus 322 ------------~-~~DllvVDEAAaI----plplL~~l~~~ 346 (758)
T COG1444 322 ------------E-EADLLVVDEAAAI----PLPLLHKLLRR 346 (758)
T ss_pred ------------c-cCCEEEEehhhcC----ChHHHHHHHhh
Confidence 0 1478999999865 44556666543
No 475
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=89.08 E-value=0.74 Score=60.00 Aligned_cols=112 Identities=17% Similarity=0.087 Sum_probs=69.8
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+++-|.+++. .. ...++|.|..|||||.+.+--+.+.+..
T Consensus 2 ~Ln~~Q~~av~-~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~------------------------------------ 42 (672)
T PRK10919 2 RLNPGQQQAVE-FV--TGPCLVLAGAGSGKTRVITNKIAHLIRG------------------------------------ 42 (672)
T ss_pred CCCHHHHHHHh-CC--CCCEEEEecCCCCHHHHHHHHHHHHHHh------------------------------------
Confidence 47889999986 32 3588999999999999854444433321
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
.+....++|+|+.|+..|..+.+.+..+.... ....+.|+|-..|..-+-..+....
T Consensus 43 --~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~---------------------~~~~v~i~TfHS~~~~iLr~~~~~~ 99 (672)
T PRK10919 43 --CGYQARHIAAVTFTNKAAREMKERVAQTLGRK---------------------EARGLMISTFHTLGLDIIKREYAAL 99 (672)
T ss_pred --cCCCHHHeeeEechHHHHHHHHHHHHHHhCcc---------------------cccCcEEEcHHHHHHHHHHHHHHHh
Confidence 01123459999999999999988887754210 0125788998887643322211110
Q ss_pred ccccccEEEEecCch
Q psy16310 333 ELYKINYLVIDETDR 347 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ 347 (1493)
.+ .-.+-|+|+.+.
T Consensus 100 g~-~~~~~i~d~~~~ 113 (672)
T PRK10919 100 GM-KSNFSLFDDTDQ 113 (672)
T ss_pred CC-CCCCeeCCHHHH
Confidence 01 123456777664
No 476
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.06 E-value=2.9 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCcchhHhhHHH
Q psy16310 806 RKDIVGAAETGSGKTLAFGIPI 827 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~lpi 827 (1493)
.+.++++||||+|||......+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 4678999999999998754433
No 477
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=89.02 E-value=1.8 Score=49.52 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
..++++.||+|+|||..+-+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 35899999999999987543
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.97 E-value=0.43 Score=51.38 Aligned_cols=39 Identities=36% Similarity=0.392 Sum_probs=31.6
Q ss_pred HHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 166 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 166 l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
|.+.|+ .++-|...+...+..+..+++++|||||||...
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 344555 667788888878888999999999999999863
No 479
>PRK05642 DNA replication initiation factor; Validated
Probab=88.92 E-value=1.4 Score=49.23 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=25.4
Q ss_pred ceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEecccc
Q psy16310 953 KINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~ 1000 (1493)
++++||||++|.+... .....+..++..+. ..+.+ ++++++.+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~----~~g~~-ilits~~~ 140 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLR----DSGRR-LLLAASKS 140 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHH----hcCCE-EEEeCCCC
Confidence 4578999999976433 22345666666553 12344 55555543
No 480
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=88.87 E-value=3.4 Score=53.31 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.6
Q ss_pred cE-EEEccCCCchhHHH
Q psy16310 191 DI-VGAAETGSGKTLAF 206 (1493)
Q Consensus 191 dv-iv~apTGSGKTl~~ 206 (1493)
++ +|.|+||+|||++.
T Consensus 782 nvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 782 QILYISGMPGTGKTATV 798 (1164)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 44 59999999999984
No 481
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.82 E-value=2.3 Score=52.03 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHH
Q psy16310 190 KDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~ 206 (1493)
..++++||+|+|||...
T Consensus 137 n~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL 153 (405)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 35789999999999864
No 482
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=88.80 E-value=2.1 Score=50.01 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.1
Q ss_pred CcEEEEccCCCcchhHhhH
Q psy16310 807 KDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~l 825 (1493)
.++|+.||.|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4899999999999977544
No 483
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=88.47 E-value=2.5 Score=45.78 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHHH
Q psy16310 191 DIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~ 207 (1493)
-+++++|||+|||....
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46789999999998743
No 484
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.24 E-value=1.8 Score=48.54 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
+..++++||+|+|||...
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 358999999999999653
No 485
>KOG1131|consensus
Probab=88.08 E-value=1.8 Score=51.51 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=50.2
Q ss_pred CCCCChHHHHhh---hhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC---ccchHHHHHHHHHHH
Q psy16310 170 GFKTPTKIQSMV---MPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND---SGLEEEAEEVLEELE 243 (1493)
Q Consensus 170 g~~~pt~iQ~~~---i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 243 (1493)
-|..-+|-|-+- +..+|..+.+.++-+|+|+|||.+.+-.++..-...... +-+. +.+-..+++.+.+++
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~----~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDE----HRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcc----cceEEEecCcchHHHHHHHHHH
Confidence 345556666543 233555567899999999999988555444433221100 0000 122334455555555
Q ss_pred HhhhcchhhhhcccCceEEEEEcccHHHHH
Q psy16310 244 EESANTTEFVKKTRNKLYALILAPTRELAI 273 (1493)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~aLiL~PTreLa~ 273 (1493)
..-.=.... -........|-|+-.+.||.
T Consensus 89 ~l~~y~~k~-~g~~~~flglglssRKNlCi 117 (755)
T KOG1131|consen 89 RLMDYREKH-LGYPEPFLGLGLSSRKNLCI 117 (755)
T ss_pred HHHHHHHHh-cCCCCceeeeeecccccccc
Confidence 442111110 01122456777777766664
No 486
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=88.05 E-value=2.4 Score=54.14 Aligned_cols=150 Identities=20% Similarity=0.256 Sum_probs=88.0
Q ss_pred HHHCCCCCCcHHHHhhHHHhhccCC-cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHH
Q psy16310 783 LYQKGFKTPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861 (1493)
Q Consensus 783 l~~~g~~~pt~iQ~~~i~~~l~~~~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (1493)
+.....+.+..-|.+.+..++..++ -+++.|.=|=|||.+..+.+.... ..
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~-~~--------------------------- 258 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAA-RL--------------------------- 258 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHH-Hh---------------------------
Confidence 5555555555555556655554444 688899999999999887773221 10
Q ss_pred hhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHH
Q psy16310 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941 (1493)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l 941 (1493)
....+++|.+||.+=+..+...+.+-....|.+-.+....... ....-.+...|=+-+|....
T Consensus 259 ------------~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~--- 321 (758)
T COG1444 259 ------------AGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ--- 321 (758)
T ss_pred ------------cCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccc--eeeecCCceeEEeeCcchhc---
Confidence 1145799999999988888777766554444332221111000 00000012235555665431
Q ss_pred HhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccc
Q psy16310 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 942 ~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~ 1000 (1493)
..-++||+|||=-+ ..+-+..++... +.++||.|+.
T Consensus 322 ----------~~~DllvVDEAAaI----plplL~~l~~~~---------~rv~~sTTIh 357 (758)
T COG1444 322 ----------EEADLLVVDEAAAI----PLPLLHKLLRRF---------PRVLFSTTIH 357 (758)
T ss_pred ----------ccCCEEEEehhhcC----ChHHHHHHHhhc---------CceEEEeeec
Confidence 01478999999764 235566665543 5789999986
No 487
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=88.02 E-value=1.4 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.5
Q ss_pred hhccCCcEEEEccCCCcchhHhh
Q psy16310 802 ALLARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 802 ~l~~~~dvlv~apTGsGKTla~~ 824 (1493)
.+..++++++.+|+|+|||..+.
T Consensus 190 ~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 190 RLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHhcCCCEEEECCCCCCHHHHHH
Confidence 55578899999999999997654
No 488
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=87.99 E-value=3 Score=45.16 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=26.5
Q ss_pred eeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 954 INYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 954 l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.++|+||-+-+... ......+..++..+ .+..-.+.+|||......
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-----~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEAL-----NPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHH-----SSSEEEEEEEGGGGGHHH
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhc-----CCccceEEEecccChHHH
Confidence 56777777755321 12234556666655 244567788999975543
No 489
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.91 E-value=2.9 Score=51.58 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=26.6
Q ss_pred ceeEEEecccchhccCCC-hhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 953 KINYLVIDETDRMIESGH-FPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~-~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..++|+|||+|.+.+... ...+..++..+.. .+.++++.|-..|..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~----~~k~iIitsd~~p~~l 241 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHD----SGKQIVICSDREPQKL 241 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHH----cCCeEEEECCCCHHHH
Confidence 357899999998765422 2345555554431 2345555554444433
No 490
>PRK05642 DNA replication initiation factor; Validated
Probab=87.86 E-value=2.6 Score=47.23 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHH
Q psy16310 190 KDIVGAAETGSGKTLA 205 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~ 205 (1493)
..++++||+|+|||..
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4688999999999976
No 491
>PHA02533 17 large terminase protein; Provisional
Probab=87.85 E-value=2.5 Score=53.12 Aligned_cols=71 Identities=17% Similarity=0.072 Sum_probs=51.0
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|.|+|...+. .+..++-.++..+=..|||.+.+..++.....
T Consensus 59 ~L~p~Q~~i~~-~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~------------------------------------ 101 (534)
T PHA02533 59 QMRDYQKDMLK-IMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF------------------------------------ 101 (534)
T ss_pred CCcHHHHHHHH-HHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh------------------------------------
Confidence 48899999886 44444555677888899999876555543321
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcC
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGK 284 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~ 284 (1493)
..+..+++++|++.-|..+.+.++.+..
T Consensus 102 ----~~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 102 ----NKDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred ----CCCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 1234799999999999988887765543
No 492
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=1.1 Score=55.77 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=47.0
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhc
Q psy16310 908 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 982 (1493)
Q Consensus 908 ~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~ 982 (1493)
..-.||...+...+-.++ --|=+-||++..-|......- -++++||+|.|...-.++.-..+++.|-
T Consensus 380 R~sLGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~~N------Pv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 380 RISLGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGVKN------PVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred EEecCccccHHHhccccc--cccccCChHHHHHHHHhCCcC------CeEEeechhhccCCCCCChHHHHHhhcC
Confidence 344588877776654433 234456999999887543211 3699999999988877777888888774
No 493
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.59 E-value=2.8 Score=51.70 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhHH
Q psy16310 190 KDIVGAAETGSGKTLA 205 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~ 205 (1493)
..++++|++|+|||..
T Consensus 142 npl~i~G~~G~GKTHL 157 (450)
T PRK14087 142 NPLFIYGESGMGKTHL 157 (450)
T ss_pred CceEEECCCCCcHHHH
Confidence 4588999999999964
No 494
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=87.56 E-value=0.79 Score=52.58 Aligned_cols=72 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
.+++..+....-..|...++-|...+..++..+.|+++++-||||||. +++.+........
T Consensus 141 Kf~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i~~~e-------------- 201 (355)
T COG4962 141 KFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFIDSDE-------------- 201 (355)
T ss_pred ccccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcCCCcc--------------
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHH
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreL 271 (1493)
+++.+=-|.||
T Consensus 202 ------------------------RvItiEDtaEL 212 (355)
T COG4962 202 ------------------------RVITIEDTAEL 212 (355)
T ss_pred ------------------------cEEEEeehhhh
No 495
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.50 E-value=2.8 Score=51.60 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCcchhHhhH
Q psy16310 805 ARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~l 825 (1493)
.|.-++++||||+|||.+...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CCcEEEEECCCCccHHHHHHH
Confidence 456788999999999987544
No 496
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.26 E-value=2.1 Score=47.73 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.+..++++||+|+|||...
T Consensus 41 ~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999653
No 497
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=87.18 E-value=3.2 Score=48.54 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=16.9
Q ss_pred CcEEEEccCCCchhHHHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFGIP 209 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~lp 209 (1493)
.++|+.+|.|+|||..+-+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred ceeEEECCCCCCHHHHHHHH
Confidence 38999999999999986553
No 498
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.15 E-value=2.8 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.060 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGIPI 210 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~lpi 210 (1493)
++-+.++||||+|||......+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4567899999999999754433
No 499
>KOG0742|consensus
Probab=87.13 E-value=0.69 Score=53.25 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=28.4
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 770 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
|++.-|++.|-+.+.++-..+-.---.+ + --+|++..+|+|+|||++
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~----a--pfRNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQ----A--PFRNILFYGPPGTGKTMF 400 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhccccccc----c--hhhheeeeCCCCCCchHH
Confidence 4555678887777765433211100000 0 126999999999999975
No 500
>PHA02533 17 large terminase protein; Provisional
Probab=86.99 E-value=3.5 Score=51.77 Aligned_cols=72 Identities=17% Similarity=0.067 Sum_probs=52.0
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.|.|+|...+.. +..++-.++..+=..|||.+....++...+.
T Consensus 59 ~L~p~Q~~i~~~-~~~~R~~ii~~aRq~GKStl~a~~al~~a~~------------------------------------ 101 (534)
T PHA02533 59 QMRDYQKDMLKI-MHKNRFNACNLSRQLGKTTVVAIFLLHYVCF------------------------------------ 101 (534)
T ss_pred CCcHHHHHHHHH-HhcCeEEEEEEcCcCChHHHHHHHHHHHHHh------------------------------------
Confidence 578999999863 4344555778888999998876555433321
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKY 902 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~ 902 (1493)
.++..+++++|++.-|..+.+.++.+...
T Consensus 102 ----~~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 102 ----NKDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred ----CCCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 12347999999999999998888776544
Done!