Query psy16310
Match_columns 1493
No_of_seqs 1024 out of 5964
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 18:07:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 100.0 3.5E-77 1.2E-81 822.3 56.0 819 170-1194 76-1318(1724)
2 2db3_A ATP-dependent RNA helic 100.0 5E-55 1.7E-59 537.0 42.6 369 764-1197 52-421 (434)
3 2db3_A ATP-dependent RNA helic 100.0 8.3E-53 2.8E-57 517.3 40.5 363 148-659 53-416 (434)
4 2i4i_A ATP-dependent RNA helic 100.0 1.8E-50 6.2E-55 497.2 39.9 385 764-1198 11-397 (417)
5 2j0s_A ATP-dependent RNA helic 100.0 1E-49 3.4E-54 489.2 38.6 362 767-1200 36-399 (410)
6 2i4i_A ATP-dependent RNA helic 100.0 1.3E-48 4.4E-53 480.7 38.3 380 148-661 12-393 (417)
7 1s2m_A Putative ATP-dependent 100.0 6E-48 2E-52 471.9 38.7 361 767-1200 20-381 (400)
8 3sqw_A ATP-dependent RNA helic 100.0 8.4E-48 2.9E-52 491.2 38.4 365 774-1199 27-413 (579)
9 3eiq_A Eukaryotic initiation f 100.0 6E-48 2E-52 474.4 35.6 361 767-1199 39-402 (414)
10 2j0s_A ATP-dependent RNA helic 100.0 9.8E-48 3.4E-52 471.5 36.0 355 150-660 36-392 (410)
11 3fht_A ATP-dependent RNA helic 100.0 1E-47 3.4E-52 472.1 35.7 368 759-1199 16-395 (412)
12 3i5x_A ATP-dependent RNA helic 100.0 1.5E-47 5.2E-52 489.2 36.8 365 774-1199 78-464 (563)
13 1hv8_A Putative ATP-dependent 100.0 9.7E-47 3.3E-51 455.6 41.0 357 767-1200 5-361 (367)
14 3fmp_B ATP-dependent RNA helic 100.0 2.2E-49 7.6E-54 495.4 17.5 367 759-1198 83-461 (479)
15 1xti_A Probable ATP-dependent 100.0 1.2E-46 4.2E-51 458.9 38.9 359 768-1198 8-372 (391)
16 3pey_A ATP-dependent RNA helic 100.0 2.9E-46 1E-50 456.3 38.5 365 767-1207 4-379 (395)
17 1s2m_A Putative ATP-dependent 100.0 2.9E-46 9.9E-51 457.0 35.2 353 150-659 20-373 (400)
18 3sqw_A ATP-dependent RNA helic 100.0 2.6E-46 8.8E-51 477.4 34.0 364 158-660 28-407 (579)
19 3eiq_A Eukaryotic initiation f 100.0 2.6E-46 8.8E-51 459.8 32.2 356 150-661 39-397 (414)
20 3i5x_A ATP-dependent RNA helic 100.0 4.5E-46 1.5E-50 475.6 34.8 365 157-660 78-458 (563)
21 1fuu_A Yeast initiation factor 100.0 2.5E-47 8.4E-52 465.6 20.3 360 767-1199 20-381 (394)
22 3fmp_B ATP-dependent RNA helic 100.0 1.2E-47 4.1E-52 479.8 17.2 359 144-659 85-455 (479)
23 1hv8_A Putative ATP-dependent 100.0 4E-45 1.4E-49 441.4 36.3 350 151-661 6-355 (367)
24 3fht_A ATP-dependent RNA helic 100.0 1.8E-45 6.1E-50 452.0 33.4 357 146-659 20-388 (412)
25 1xti_A Probable ATP-dependent 100.0 4.4E-45 1.5E-49 445.2 34.2 347 151-652 8-358 (391)
26 3pey_A ATP-dependent RNA helic 100.0 1E-44 3.5E-49 442.6 33.3 344 150-653 4-358 (395)
27 2v1x_A ATP-dependent DNA helic 100.0 9.2E-45 3.2E-49 457.2 33.0 340 770-1193 23-383 (591)
28 2z0m_A 337AA long hypothetical 100.0 4.1E-44 1.4E-48 427.2 36.1 334 775-1197 1-335 (337)
29 1oyw_A RECQ helicase, ATP-depe 100.0 2E-44 6.7E-49 450.5 31.6 346 767-1195 1-354 (523)
30 1fuu_A Yeast initiation factor 100.0 1.5E-45 5.3E-50 449.7 19.7 355 150-661 20-376 (394)
31 3oiy_A Reverse gyrase helicase 100.0 1.3E-44 4.3E-49 443.9 26.9 331 779-1197 10-376 (414)
32 2v1x_A ATP-dependent DNA helic 100.0 2.8E-43 9.5E-48 443.8 31.7 342 154-661 24-384 (591)
33 2z0m_A 337AA long hypothetical 100.0 8.7E-43 3E-47 415.6 33.3 330 158-660 1-331 (337)
34 3fho_A ATP-dependent RNA helic 100.0 4.5E-44 1.5E-48 448.0 22.3 358 767-1199 118-486 (508)
35 1oyw_A RECQ helicase, ATP-depe 100.0 4.3E-43 1.5E-47 438.4 29.6 346 150-662 1-354 (523)
36 1tf5_A Preprotein translocase 100.0 1.1E-42 3.9E-47 433.5 31.4 352 785-1186 79-547 (844)
37 3oiy_A Reverse gyrase helicase 100.0 1.5E-42 5E-47 425.6 26.1 332 162-659 10-371 (414)
38 3l9o_A ATP-dependent RNA helic 100.0 8.9E-43 3E-47 465.7 22.4 371 151-652 162-598 (1108)
39 4ddu_A Reverse gyrase; topoiso 100.0 6.5E-42 2.2E-46 457.2 30.4 353 785-1225 74-531 (1104)
40 3l9o_A ATP-dependent RNA helic 100.0 3.6E-42 1.2E-46 459.9 24.7 363 768-1194 162-608 (1108)
41 3fho_A ATP-dependent RNA helic 100.0 2.1E-42 7.1E-47 432.9 18.9 351 150-659 118-479 (508)
42 1tf5_A Preprotein translocase 100.0 1.3E-41 4.6E-46 423.9 24.3 396 168-653 79-547 (844)
43 2fsf_A Preprotein translocase 100.0 6.1E-41 2.1E-45 416.2 27.7 351 786-1186 71-585 (853)
44 2va8_A SSO2462, SKI2-type heli 100.0 2.4E-39 8.1E-44 424.0 38.9 344 768-1185 8-409 (715)
45 1gku_B Reverse gyrase, TOP-RG; 100.0 9.6E-41 3.3E-45 447.2 24.7 344 784-1217 52-486 (1054)
46 4a2p_A RIG-I, retinoic acid in 100.0 3.2E-40 1.1E-44 422.0 28.1 357 786-1188 3-512 (556)
47 2zj8_A DNA helicase, putative 100.0 8.9E-40 3.1E-44 427.6 32.1 341 769-1187 2-390 (720)
48 1nkt_A Preprotein translocase 100.0 2.8E-39 9.5E-44 401.0 34.1 352 785-1186 107-619 (922)
49 2p6r_A Afuhel308 helicase; pro 100.0 3.4E-40 1.2E-44 430.3 24.0 342 769-1186 2-390 (702)
50 2ykg_A Probable ATP-dependent 100.0 3.4E-40 1.2E-44 432.5 23.9 368 780-1190 3-522 (696)
51 4a2p_A RIG-I, retinoic acid in 100.0 5.1E-40 1.7E-44 420.2 24.6 388 170-661 4-518 (556)
52 2eyq_A TRCF, transcription-rep 100.0 3.8E-39 1.3E-43 433.7 33.7 389 772-1278 585-988 (1151)
53 3tbk_A RIG-I helicase domain; 100.0 8.2E-40 2.8E-44 418.3 25.4 359 789-1190 3-513 (555)
54 2zj8_A DNA helicase, putative 100.0 1.5E-39 5.2E-44 425.4 28.3 344 152-652 2-388 (720)
55 2va8_A SSO2462, SKI2-type heli 100.0 3.4E-39 1.2E-43 422.5 31.7 353 151-652 8-409 (715)
56 4ddu_A Reverse gyrase; topoiso 100.0 2.1E-39 7.3E-44 433.0 29.0 292 168-623 74-388 (1104)
57 2p6r_A Afuhel308 helicase; pro 100.0 1.1E-39 3.9E-44 425.4 23.9 347 152-652 2-389 (702)
58 2ykg_A Probable ATP-dependent 100.0 1.4E-39 4.7E-44 426.8 24.3 424 163-660 3-525 (696)
59 2fsf_A Preprotein translocase 100.0 1.3E-39 4.4E-44 404.4 22.4 429 169-654 71-586 (853)
60 4a2q_A RIG-I, retinoic acid in 100.0 4.7E-39 1.6E-43 424.7 28.9 359 785-1188 243-753 (797)
61 3tbk_A RIG-I helicase domain; 100.0 1.8E-39 6E-44 415.2 21.9 414 173-661 4-517 (555)
62 4f92_B U5 small nuclear ribonu 100.0 6.7E-39 2.3E-43 442.2 28.7 346 787-1195 76-484 (1724)
63 2xgj_A ATP-dependent RNA helic 100.0 3.6E-38 1.2E-42 417.7 34.5 346 784-1194 81-510 (1010)
64 4a2q_A RIG-I, retinoic acid in 100.0 7.5E-39 2.6E-43 422.7 26.0 421 168-662 243-760 (797)
65 1nkt_A Preprotein translocase 100.0 1.3E-38 4.4E-43 395.0 23.2 397 169-654 108-620 (922)
66 1gku_B Reverse gyrase, TOP-RG; 100.0 9.2E-39 3.1E-43 428.1 22.7 326 168-660 53-463 (1054)
67 4a2w_A RIG-I, retinoic acid in 100.0 5E-38 1.7E-42 418.1 26.0 355 785-1187 243-752 (936)
68 1gm5_A RECG; helicase, replica 100.0 3.3E-38 1.1E-42 404.6 23.2 321 777-1187 356-700 (780)
69 2xgj_A ATP-dependent RNA helic 100.0 2.9E-37 9.8E-42 409.1 31.5 352 167-651 81-499 (1010)
70 4a4z_A Antiviral helicase SKI2 100.0 6.5E-37 2.2E-41 406.0 32.0 344 786-1195 36-505 (997)
71 4a2w_A RIG-I, retinoic acid in 100.0 1.5E-37 5E-42 413.6 24.2 387 168-659 243-757 (936)
72 4gl2_A Interferon-induced heli 100.0 9.3E-38 3.2E-42 409.6 20.9 355 789-1184 6-518 (699)
73 2whx_A Serine protease/ntpase/ 100.0 5.8E-38 2E-42 396.2 15.3 315 773-1196 155-493 (618)
74 2jlq_A Serine protease subunit 100.0 2.3E-37 7.8E-42 380.6 19.2 289 787-1183 1-310 (451)
75 4gl2_A Interferon-induced heli 100.0 3.4E-37 1.1E-41 404.4 21.8 411 173-652 7-519 (699)
76 1wp9_A ATP-dependent RNA helic 100.0 8.4E-36 2.9E-40 374.8 32.9 345 790-1187 9-478 (494)
77 1wp9_A ATP-dependent RNA helic 100.0 1E-35 3.6E-40 373.9 30.6 399 173-655 9-479 (494)
78 2jlq_A Serine protease subunit 100.0 8.8E-37 3E-41 375.3 19.2 290 170-651 1-311 (451)
79 1gm5_A RECG; helicase, replica 100.0 2.2E-36 7.4E-41 387.8 22.9 326 160-659 356-705 (780)
80 4a4z_A Antiviral helicase SKI2 100.0 9.2E-36 3.2E-40 394.9 28.8 359 169-649 36-490 (997)
81 2whx_A Serine protease/ntpase/ 100.0 5.3E-37 1.8E-41 387.4 16.1 311 156-659 155-489 (618)
82 3o8b_A HCV NS3 protease/helica 100.0 3.9E-36 1.3E-40 373.7 15.4 281 791-1188 217-518 (666)
83 2wv9_A Flavivirin protease NS2 100.0 2E-37 6.7E-42 393.3 3.5 304 782-1192 202-544 (673)
84 1yks_A Genome polyprotein [con 100.0 3.5E-36 1.2E-40 368.0 14.0 282 802-1195 4-313 (440)
85 2oca_A DAR protein, ATP-depend 100.0 1.3E-35 4.4E-40 374.1 18.5 328 788-1182 111-453 (510)
86 2xau_A PRE-mRNA-splicing facto 100.0 6.5E-35 2.2E-39 377.7 23.2 334 766-1186 70-445 (773)
87 2eyq_A TRCF, transcription-rep 100.0 1.1E-33 3.9E-38 380.6 35.0 323 156-652 586-923 (1151)
88 1yks_A Genome polyprotein [con 100.0 2.5E-35 8.6E-40 360.5 14.2 279 185-659 4-310 (440)
89 2wv9_A Flavivirin protease NS2 100.0 2.1E-36 7.2E-41 383.8 4.4 303 165-658 202-543 (673)
90 3o8b_A HCV NS3 protease/helica 100.0 1.1E-34 3.8E-39 360.7 18.0 281 174-655 217-518 (666)
91 2z83_A Helicase/nucleoside tri 100.0 4.4E-35 1.5E-39 360.7 14.3 273 800-1184 15-313 (459)
92 2xau_A PRE-mRNA-splicing facto 100.0 5.1E-34 1.7E-38 369.3 24.1 335 149-653 70-445 (773)
93 2oca_A DAR protein, ATP-depend 100.0 3.8E-34 1.3E-38 360.7 21.7 337 171-649 111-453 (510)
94 2z83_A Helicase/nucleoside tri 100.0 2E-34 6.9E-39 354.8 15.7 273 183-651 15-313 (459)
95 2fwr_A DNA repair protein RAD2 100.0 1.9E-33 6.5E-38 350.7 22.3 316 789-1184 92-454 (472)
96 2v6i_A RNA helicase; membrane, 100.0 2.3E-33 7.9E-38 342.5 21.5 269 806-1181 2-288 (431)
97 3rc3_A ATP-dependent RNA helic 100.0 4.6E-33 1.6E-37 351.6 19.3 308 776-1196 130-456 (677)
98 2v6i_A RNA helicase; membrane, 100.0 1.1E-32 3.9E-37 336.4 21.2 269 189-648 2-288 (431)
99 2fwr_A DNA repair protein RAD2 100.0 1.8E-32 6.2E-37 341.8 21.0 342 173-652 93-455 (472)
100 3rc3_A ATP-dependent RNA helic 100.0 4.5E-32 1.5E-36 342.6 16.4 272 188-650 154-444 (677)
101 3h1t_A Type I site-specific re 100.0 6.1E-32 2.1E-36 346.0 17.7 326 789-1173 177-545 (590)
102 3fe2_A Probable ATP-dependent 100.0 7.7E-31 2.6E-35 295.7 21.2 202 764-1008 25-226 (242)
103 3fmo_B ATP-dependent RNA helic 100.0 4E-31 1.4E-35 306.4 17.8 204 756-1008 80-286 (300)
104 3jux_A Protein translocase sub 100.0 1.3E-28 4.5E-33 298.5 38.0 152 1057-1213 451-620 (822)
105 3fe2_A Probable ATP-dependent 100.0 4.1E-30 1.4E-34 289.7 20.7 202 148-420 26-227 (242)
106 3fmo_B ATP-dependent RNA helic 100.0 2.3E-30 7.8E-35 300.0 18.5 203 141-420 82-287 (300)
107 3dmq_A RNA polymerase-associat 100.0 2.9E-30 9.9E-35 343.7 21.3 364 789-1202 152-631 (968)
108 3h1t_A Type I site-specific re 100.0 3.1E-30 1E-34 330.3 20.2 345 173-640 178-545 (590)
109 3ber_A Probable ATP-dependent 100.0 1.7E-29 5.9E-34 285.1 23.5 199 763-1008 38-236 (249)
110 3iuy_A Probable ATP-dependent 100.0 9E-30 3.1E-34 284.5 19.5 203 763-1008 14-217 (228)
111 3ly5_A ATP-dependent RNA helic 100.0 2.3E-29 8E-34 286.4 21.1 198 768-1008 52-251 (262)
112 1vec_A ATP-dependent RNA helic 100.0 6.2E-29 2.1E-33 273.1 23.6 193 768-1008 3-196 (206)
113 1q0u_A Bstdead; DEAD protein, 100.0 2.3E-29 8E-34 279.1 18.8 193 768-1008 4-200 (219)
114 3iuy_A Probable ATP-dependent 100.0 3.4E-29 1.2E-33 279.8 20.2 202 147-419 15-217 (228)
115 2oxc_A Probable ATP-dependent 100.0 7.5E-29 2.6E-33 277.1 22.7 194 765-1007 21-216 (230)
116 3ber_A Probable ATP-dependent 100.0 7.3E-29 2.5E-33 280.0 21.9 198 148-420 40-237 (249)
117 3bor_A Human initiation factor 100.0 3.8E-29 1.3E-33 280.8 18.9 196 765-1008 27-223 (237)
118 2pl3_A Probable ATP-dependent 100.0 1.3E-28 4.3E-33 276.7 23.2 199 765-1007 22-220 (236)
119 1wrb_A DJVLGB; RNA helicase, D 100.0 2.8E-29 9.5E-34 285.2 17.4 208 766-1008 21-228 (253)
120 1vec_A ATP-dependent RNA helic 100.0 1.7E-28 5.6E-33 269.7 22.7 193 151-419 3-196 (206)
121 3ly5_A ATP-dependent RNA helic 100.0 1E-28 3.4E-33 281.2 20.6 198 152-420 53-252 (262)
122 1q0u_A Bstdead; DEAD protein, 100.0 6.5E-29 2.2E-33 275.5 18.2 194 151-420 4-201 (219)
123 2oxc_A Probable ATP-dependent 100.0 2.4E-28 8.3E-33 272.9 22.3 195 148-419 21-217 (230)
124 3bor_A Human initiation factor 100.0 1.2E-28 4.1E-33 276.7 19.0 195 149-419 28-223 (237)
125 3jux_A Protein translocase sub 100.0 3.3E-28 1.1E-32 295.0 24.0 130 524-655 451-591 (822)
126 1wrb_A DJVLGB; RNA helicase, D 100.0 9.5E-29 3.2E-33 280.8 18.3 209 149-420 21-229 (253)
127 3dmq_A RNA polymerase-associat 100.0 1.2E-28 4.1E-33 328.1 21.6 123 526-648 484-610 (968)
128 1qde_A EIF4A, translation init 100.0 2.4E-28 8.1E-33 272.2 20.4 194 766-1008 12-205 (224)
129 2pl3_A Probable ATP-dependent 100.0 6.4E-28 2.2E-32 271.0 22.7 200 149-420 23-222 (236)
130 2gxq_A Heat resistant RNA depe 100.0 4.3E-28 1.5E-32 266.6 20.5 192 769-1007 2-193 (207)
131 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 8.2E-28 2.8E-32 315.9 24.5 329 789-1182 270-707 (1038)
132 1qde_A EIF4A, translation init 100.0 9.5E-28 3.3E-32 267.4 20.8 195 149-420 12-206 (224)
133 3dkp_A Probable ATP-dependent 100.0 2.1E-28 7.3E-33 276.6 15.6 199 766-1008 23-229 (245)
134 2gxq_A Heat resistant RNA depe 100.0 1.2E-27 4.2E-32 263.0 20.2 193 152-419 2-194 (207)
135 1t6n_A Probable ATP-dependent 100.0 1.3E-27 4.5E-32 265.4 20.3 193 767-1007 13-208 (220)
136 1z63_A Helicase of the SNF2/RA 100.0 2.5E-27 8.7E-32 297.6 24.4 332 789-1186 36-455 (500)
137 3dkp_A Probable ATP-dependent 99.9 8.9E-28 3E-32 271.5 16.2 201 149-421 23-231 (245)
138 1t6n_A Probable ATP-dependent 99.9 3.6E-27 1.2E-31 261.8 20.2 193 151-419 14-209 (220)
139 1z63_A Helicase of the SNF2/RA 99.9 1.4E-27 4.9E-32 299.8 17.4 124 528-651 322-453 (500)
140 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 3.4E-26 1.1E-30 300.7 24.5 339 173-649 271-707 (1038)
141 2ipc_A Preprotein translocase 99.9 6.1E-24 2.1E-28 262.4 35.6 134 785-966 75-215 (997)
142 1z3i_X Similar to RAD54-like; 99.9 2.4E-24 8.3E-29 275.9 28.0 345 790-1184 55-528 (644)
143 1c4o_A DNA nucleotide excision 99.9 3.6E-24 1.2E-28 273.5 29.2 127 1065-1192 424-558 (664)
144 3mwy_W Chromo domain-containin 99.9 2.1E-24 7.2E-29 283.7 26.2 396 173-651 236-684 (800)
145 3mwy_W Chromo domain-containin 99.9 7.5E-24 2.6E-28 278.4 30.7 338 790-1185 236-685 (800)
146 1z3i_X Similar to RAD54-like; 99.9 1.4E-23 4.8E-28 268.8 31.1 123 529-651 397-528 (644)
147 2p6n_A ATP-dependent RNA helic 99.9 2.7E-24 9.1E-29 231.0 17.7 163 1035-1197 12-175 (191)
148 2ipc_A Preprotein translocase 99.9 8.1E-24 2.8E-28 261.3 24.2 134 169-350 76-216 (997)
149 2hjv_A ATP-dependent RNA helic 99.9 4.4E-24 1.5E-28 224.1 17.9 150 1050-1199 7-157 (163)
150 1c4o_A DNA nucleotide excision 99.9 3.8E-23 1.3E-27 264.0 28.4 117 543-660 438-559 (664)
151 2d7d_A Uvrabc system protein B 99.9 1.1E-22 3.7E-27 259.7 30.7 115 1076-1191 444-563 (661)
152 3eaq_A Heat resistant RNA depe 99.9 1.3E-23 4.3E-28 230.4 18.3 154 1053-1206 6-160 (212)
153 2rb4_A ATP-dependent RNA helic 99.9 7.1E-24 2.4E-28 225.5 15.7 152 1049-1200 4-163 (175)
154 1t5i_A C_terminal domain of A 99.9 1.1E-23 3.6E-28 222.9 15.1 150 1050-1199 3-154 (172)
155 1fuk_A Eukaryotic initiation f 99.9 2.1E-23 7.1E-28 219.5 16.9 148 1052-1199 3-152 (165)
156 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.2E-23 4.1E-28 225.1 14.9 151 1048-1198 15-167 (185)
157 3i32_A Heat resistant RNA depe 99.9 4E-23 1.4E-27 236.6 18.2 154 1053-1206 3-157 (300)
158 2hjv_A ATP-dependent RNA helic 99.9 3.4E-23 1.2E-27 217.3 15.2 142 519-660 9-151 (163)
159 2p6n_A ATP-dependent RNA helic 99.9 3.4E-23 1.1E-27 222.5 15.2 142 518-659 28-170 (191)
160 3eaq_A Heat resistant RNA depe 99.9 6.3E-23 2.2E-27 224.8 15.2 139 522-660 8-147 (212)
161 2d7d_A Uvrabc system protein B 99.9 1.2E-21 4.2E-26 250.0 28.5 117 543-660 444-565 (661)
162 1t5i_A C_terminal domain of A 99.9 6.8E-23 2.3E-27 216.7 13.5 134 519-652 5-139 (172)
163 2jgn_A DBX, DDX3, ATP-dependen 99.9 7.9E-23 2.7E-27 218.7 13.8 145 517-661 17-163 (185)
164 2rb4_A ATP-dependent RNA helic 99.9 8.9E-23 3E-27 217.0 14.0 141 519-659 7-155 (175)
165 1fuk_A Eukaryotic initiation f 99.9 1.4E-22 4.8E-27 213.2 13.2 140 521-660 5-146 (165)
166 3i32_A Heat resistant RNA depe 99.9 2.8E-22 9.6E-27 229.6 14.1 139 521-659 4-143 (300)
167 2yjt_D ATP-dependent RNA helic 99.8 1.5E-23 5.2E-28 221.7 0.0 148 1053-1200 4-153 (170)
168 2yjt_D ATP-dependent RNA helic 99.7 1.3E-22 4.6E-27 214.4 0.0 138 524-661 8-147 (170)
169 2vl7_A XPD; helicase, unknown 99.8 3.2E-20 1.1E-24 232.7 18.3 107 1070-1182 377-519 (540)
170 2vl7_A XPD; helicase, unknown 99.8 2.1E-19 7.2E-24 225.2 21.3 108 534-648 374-518 (540)
171 3b6e_A Interferon-induced heli 99.8 2.2E-20 7.6E-25 206.4 9.5 175 786-998 29-216 (216)
172 3b6e_A Interferon-induced heli 99.8 5.5E-20 1.9E-24 203.2 11.3 152 169-358 29-184 (216)
173 3crv_A XPD/RAD3 related DNA he 99.8 1.5E-17 5.2E-22 209.3 26.6 133 787-967 1-187 (551)
174 3llm_A ATP-dependent RNA helic 99.8 7.4E-19 2.5E-23 196.4 12.4 173 776-1003 47-222 (235)
175 3llm_A ATP-dependent RNA helic 99.7 3.2E-18 1.1E-22 191.2 13.2 173 159-414 47-222 (235)
176 3crv_A XPD/RAD3 related DNA he 99.7 4.9E-17 1.7E-21 204.7 25.3 133 170-350 1-187 (551)
177 1rif_A DAR protein, DNA helica 99.7 2.1E-18 7.1E-23 198.7 9.1 155 789-1003 112-266 (282)
178 1rif_A DAR protein, DNA helica 99.7 5.9E-18 2E-22 194.9 11.2 155 173-415 113-267 (282)
179 4a15_A XPD helicase, ATP-depen 99.7 2.2E-15 7.5E-20 190.6 22.1 108 1071-1182 442-582 (620)
180 2fz4_A DNA repair protein RAD2 99.6 7E-16 2.4E-20 171.8 13.9 139 789-1002 92-231 (237)
181 2fz4_A DNA repair protein RAD2 99.6 4.8E-15 1.6E-19 165.1 14.6 116 172-352 92-208 (237)
182 4a15_A XPD helicase, ATP-depen 99.6 9E-15 3.1E-19 185.0 18.6 110 535-648 439-581 (620)
183 1z5z_A Helicase of the SNF2/RA 99.6 2.3E-15 7.7E-20 170.4 11.4 124 528-651 93-224 (271)
184 1z5z_A Helicase of the SNF2/RA 99.6 2.6E-15 8.8E-20 170.0 11.3 125 1061-1185 93-225 (271)
185 1w36_D RECD, exodeoxyribonucle 98.3 7.8E-07 2.7E-11 112.5 8.2 145 792-998 151-298 (608)
186 1w36_D RECD, exodeoxyribonucle 98.2 3.3E-06 1.1E-10 106.7 10.1 68 175-283 151-220 (608)
187 4b3f_X DNA-binding protein smu 96.9 0.0011 3.8E-08 84.7 8.7 68 173-282 189-256 (646)
188 3upu_A ATP-dependent DNA helic 96.8 0.0023 7.8E-08 78.2 10.1 72 784-896 19-94 (459)
189 2gk6_A Regulator of nonsense t 96.8 0.0043 1.5E-07 78.7 12.2 70 171-282 178-247 (624)
190 4b3f_X DNA-binding protein smu 96.8 0.0016 5.6E-08 83.1 8.0 68 790-899 189-256 (646)
191 2gk6_A Regulator of nonsense t 96.7 0.0044 1.5E-07 78.6 11.7 70 788-899 178-247 (624)
192 3e1s_A Exodeoxyribonuclease V, 96.6 0.0055 1.9E-07 76.4 11.2 64 173-279 189-252 (574)
193 3upu_A ATP-dependent DNA helic 96.6 0.005 1.7E-07 75.1 10.4 72 167-279 19-94 (459)
194 3e1s_A Exodeoxyribonuclease V, 96.6 0.0032 1.1E-07 78.6 8.6 64 790-896 189-252 (574)
195 2xzl_A ATP-dependent helicase 96.5 0.0075 2.6E-07 78.2 11.6 70 171-282 358-427 (802)
196 2xzl_A ATP-dependent helicase 96.5 0.0061 2.1E-07 79.0 10.6 72 787-900 357-428 (802)
197 2wjy_A Regulator of nonsense t 96.3 0.0099 3.4E-07 76.9 10.9 70 788-899 354-423 (800)
198 2wjy_A Regulator of nonsense t 96.3 0.011 3.7E-07 76.6 11.1 70 171-282 354-423 (800)
199 3hgt_A HDA1 complex subunit 3; 95.6 0.036 1.2E-06 62.5 10.2 123 528-655 106-241 (328)
200 2o0j_A Terminase, DNA packagin 94.9 0.1 3.6E-06 61.0 11.5 71 790-901 163-233 (385)
201 3hgt_A HDA1 complex subunit 3; 94.5 0.12 4.3E-06 58.1 10.4 123 1062-1189 107-242 (328)
202 2o0j_A Terminase, DNA packagin 94.2 0.22 7.4E-06 58.3 11.9 70 173-283 163-232 (385)
203 3ec2_A DNA replication protein 93.7 0.14 4.7E-06 53.3 8.4 20 805-824 37-56 (180)
204 3cpe_A Terminase, DNA packagin 93.0 0.19 6.5E-06 63.1 9.4 73 173-286 163-235 (592)
205 3lfu_A DNA helicase II; SF1 he 92.9 0.13 4.6E-06 65.6 8.1 71 789-900 8-78 (647)
206 3ec2_A DNA replication protein 92.9 0.32 1.1E-05 50.5 9.5 20 188-207 37-56 (180)
207 3lfu_A DNA helicase II; SF1 he 92.5 0.2 6.9E-06 63.9 8.9 112 172-347 8-119 (647)
208 3te6_A Regulatory protein SIR3 91.7 0.88 3E-05 51.7 11.9 19 188-206 44-62 (318)
209 3vkw_A Replicase large subunit 91.6 0.15 5.2E-06 60.2 5.6 20 262-281 187-206 (446)
210 1d2n_A N-ethylmaleimide-sensit 91.5 0.72 2.5E-05 51.4 11.0 17 807-823 65-81 (272)
211 3vkw_A Replicase large subunit 91.1 0.4 1.4E-05 56.7 8.5 20 879-898 187-206 (446)
212 1xx6_A Thymidine kinase; NESG, 91.0 0.27 9.1E-06 51.6 6.2 21 188-208 7-27 (191)
213 2kjq_A DNAA-related protein; s 90.7 0.18 6.1E-06 50.6 4.3 19 805-823 35-53 (149)
214 3te6_A Regulatory protein SIR3 90.5 1.4 4.9E-05 49.9 12.1 43 953-1000 132-174 (318)
215 1uaa_A REP helicase, protein ( 90.4 0.33 1.1E-05 62.1 7.6 90 173-324 2-91 (673)
216 1uaa_A REP helicase, protein ( 90.4 0.29 9.9E-06 62.7 7.1 71 790-901 2-72 (673)
217 1xx6_A Thymidine kinase; NESG, 90.3 0.37 1.3E-05 50.4 6.5 22 805-826 7-28 (191)
218 2b8t_A Thymidine kinase; deoxy 89.7 0.23 8E-06 53.4 4.5 33 312-348 69-101 (223)
219 1l8q_A Chromosomal replication 89.7 0.95 3.3E-05 51.9 10.1 18 806-823 37-54 (324)
220 3vfd_A Spastin; ATPase, microt 89.5 1.1 3.9E-05 52.8 10.8 18 806-823 148-165 (389)
221 2kjq_A DNAA-related protein; s 89.3 0.34 1.2E-05 48.6 5.0 20 188-207 35-54 (149)
222 2orw_A Thymidine kinase; TMTK, 89.1 0.1 3.5E-06 54.6 1.1 19 189-207 3-21 (184)
223 1pjr_A PCRA; DNA repair, DNA r 88.5 0.7 2.4E-05 59.5 8.5 112 172-347 10-121 (724)
224 1pjr_A PCRA; DNA repair, DNA r 88.2 0.66 2.3E-05 59.7 8.0 71 789-900 10-80 (724)
225 1l8q_A Chromosomal replication 88.0 2 6.9E-05 49.1 11.3 19 189-207 37-55 (324)
226 2zpa_A Uncharacterized protein 87.3 0.45 1.5E-05 59.3 5.3 38 173-210 175-213 (671)
227 2z4s_A Chromosomal replication 87.2 1.3 4.6E-05 53.1 9.4 18 806-823 130-147 (440)
228 3u4q_A ATP-dependent helicase/ 87.2 0.81 2.8E-05 62.6 8.3 129 173-347 10-138 (1232)
229 3u4q_A ATP-dependent helicase/ 87.1 0.67 2.3E-05 63.4 7.4 71 790-899 10-80 (1232)
230 2w58_A DNAI, primosome compone 86.7 1.6 5.5E-05 45.9 8.8 17 807-823 55-71 (202)
231 2qgz_A Helicase loader, putati 86.6 1.5 5.1E-05 49.8 8.9 20 189-208 152-171 (308)
232 2qby_B CDC6 homolog 3, cell di 86.3 1.5 5.1E-05 51.6 9.1 18 806-823 45-62 (384)
233 2v1u_A Cell division control p 85.7 2.6 8.9E-05 49.4 10.8 19 805-823 43-61 (387)
234 2qgz_A Helicase loader, putati 85.6 1.5 5.2E-05 49.8 8.3 19 806-824 152-170 (308)
235 1d2n_A N-ethylmaleimide-sensit 85.4 3.7 0.00013 45.5 11.3 19 189-207 64-82 (272)
236 2v1u_A Cell division control p 84.5 6.2 0.00021 46.0 13.4 19 188-206 43-61 (387)
237 1a5t_A Delta prime, HOLB; zinc 82.7 3.6 0.00012 47.2 10.0 33 792-824 4-42 (334)
238 1w4r_A Thymidine kinase; type 82.7 1.9 6.6E-05 44.8 6.7 20 806-825 20-39 (195)
239 2z4s_A Chromosomal replication 82.7 5 0.00017 48.0 11.5 19 189-207 130-148 (440)
240 3kl4_A SRP54, signal recogniti 82.3 3.3 0.00011 49.0 9.5 46 953-1003 179-227 (433)
241 3eie_A Vacuolar protein sortin 82.0 5 0.00017 45.7 10.8 53 768-823 15-68 (322)
242 3cpe_A Terminase, DNA packagin 81.8 2.9 9.9E-05 52.3 9.3 74 790-904 163-236 (592)
243 2zpa_A Uncharacterized protein 81.6 1.2 4.2E-05 55.3 5.6 39 790-828 175-214 (671)
244 2chg_A Replication factor C sm 81.5 7.6 0.00026 40.9 11.5 17 807-823 39-55 (226)
245 3e2i_A Thymidine kinase; Zn-bi 80.6 1.6 5.5E-05 46.1 5.2 22 805-826 27-48 (219)
246 2z43_A DNA repair and recombin 80.2 2.4 8E-05 48.6 7.1 24 804-827 105-128 (324)
247 2qby_A CDC6 homolog 1, cell di 80.1 7 0.00024 45.5 11.5 18 806-823 45-62 (386)
248 1a5t_A Delta prime, HOLB; zinc 79.8 3.3 0.00011 47.6 8.2 35 174-208 3-43 (334)
249 3pfi_A Holliday junction ATP-d 79.7 3.1 0.00011 47.8 8.0 17 807-823 56-72 (338)
250 2qby_B CDC6 homolog 3, cell di 78.9 4.4 0.00015 47.4 9.2 18 189-206 45-62 (384)
251 2orv_A Thymidine kinase; TP4A 78.6 2.7 9.1E-05 44.9 6.2 24 806-829 19-42 (234)
252 3e2i_A Thymidine kinase; Zn-bi 78.5 1.3 4.4E-05 46.8 3.7 20 188-207 27-46 (219)
253 2dr3_A UPF0273 protein PH0284; 77.6 3.7 0.00013 44.6 7.4 23 803-825 20-42 (247)
254 2q6t_A DNAB replication FORK h 77.5 1.6 5.4E-05 52.6 4.7 22 803-824 197-218 (444)
255 1w4r_A Thymidine kinase; type 77.4 2 6.8E-05 44.7 4.7 17 189-205 20-36 (195)
256 2orv_A Thymidine kinase; TP4A 76.9 3.1 0.00011 44.4 6.1 22 189-210 19-40 (234)
257 2r6a_A DNAB helicase, replicat 76.7 1.5 5.1E-05 53.0 4.1 23 803-825 200-222 (454)
258 3u61_B DNA polymerase accessor 76.4 2.3 8E-05 48.6 5.6 28 953-980 105-132 (324)
259 2qby_A CDC6 homolog 1, cell di 76.2 24 0.00083 40.7 14.7 18 189-206 45-62 (386)
260 3kl4_A SRP54, signal recogniti 75.6 5.9 0.0002 46.9 8.7 20 189-208 97-116 (433)
261 3u61_B DNA polymerase accessor 74.4 5.4 0.00019 45.4 8.0 16 191-206 50-65 (324)
262 3dm5_A SRP54, signal recogniti 74.1 17 0.00058 43.0 12.1 20 806-825 100-119 (443)
263 3n70_A Transport activator; si 74.1 1.9 6.4E-05 42.7 3.4 21 187-207 22-42 (145)
264 4a1f_A DNAB helicase, replicat 74.0 2.4 8.2E-05 48.5 4.7 23 803-825 43-65 (338)
265 3n70_A Transport activator; si 73.1 1.9 6.5E-05 42.7 3.2 21 804-824 22-42 (145)
266 3co5_A Putative two-component 72.8 1.9 6.5E-05 42.6 3.1 20 187-206 25-44 (143)
267 3co5_A Putative two-component 72.1 1.9 6.7E-05 42.5 3.0 20 804-823 25-44 (143)
268 2w0m_A SSO2452; RECA, SSPF, un 71.4 11 0.00039 40.0 9.3 21 804-824 21-41 (235)
269 1sxj_E Activator 1 40 kDa subu 71.4 6.8 0.00023 45.2 8.0 16 808-823 38-53 (354)
270 1nlf_A Regulatory protein REPA 71.4 12 0.00042 41.4 9.8 24 803-826 27-50 (279)
271 2z43_A DNA repair and recombin 70.7 6.9 0.00023 44.6 7.6 23 187-209 105-127 (324)
272 2oap_1 GSPE-2, type II secreti 68.8 4.1 0.00014 49.6 5.4 41 163-205 236-276 (511)
273 4b4t_M 26S protease regulatory 68.0 1.9 6.6E-05 51.0 2.2 53 767-823 177-232 (434)
274 2i1q_A DNA repair and recombin 67.8 9.2 0.00031 43.5 7.9 23 805-827 97-119 (322)
275 3lda_A DNA repair protein RAD5 67.6 16 0.00056 42.7 10.1 19 806-824 178-196 (400)
276 2gno_A DNA polymerase III, gam 67.2 21 0.0007 40.2 10.5 43 952-1001 81-123 (305)
277 1v5w_A DMC1, meiotic recombina 66.7 7.4 0.00025 44.8 6.8 22 805-826 121-142 (343)
278 4b4t_M 26S protease regulatory 66.2 3 0.0001 49.4 3.3 53 150-206 177-232 (434)
279 2oap_1 GSPE-2, type II secreti 65.5 3.7 0.00013 50.0 4.0 39 782-822 238-276 (511)
280 3bh0_A DNAB-like replicative h 64.6 4.1 0.00014 46.3 4.0 23 803-825 65-87 (315)
281 3dm5_A SRP54, signal recogniti 64.5 12 0.0004 44.4 7.9 20 189-208 100-119 (443)
282 3hjh_A Transcription-repair-co 62.4 19 0.00067 43.2 9.5 84 189-321 14-114 (483)
283 4a1f_A DNAB helicase, replicat 62.2 2.2 7.5E-05 48.8 1.1 24 185-208 42-65 (338)
284 2r6a_A DNAB helicase, replicat 61.1 12 0.00041 44.9 7.4 25 186-210 200-224 (454)
285 2q6t_A DNAB replication FORK h 59.6 7.1 0.00024 46.8 5.1 23 186-208 197-219 (444)
286 4b4t_J 26S protease regulatory 59.5 3.1 0.00011 48.5 1.8 53 767-823 144-199 (405)
287 3cf0_A Transitional endoplasmi 59.1 3.2 0.00011 46.9 1.8 52 768-823 12-66 (301)
288 4b4t_J 26S protease regulatory 59.1 4.2 0.00014 47.5 2.7 52 151-206 145-199 (405)
289 1u0j_A DNA replication protein 56.8 13 0.00044 40.7 6.0 44 778-824 74-122 (267)
290 3cf0_A Transitional endoplasmi 56.1 4.6 0.00016 45.6 2.4 52 151-206 12-66 (301)
291 1v5w_A DMC1, meiotic recombina 56.0 18 0.00063 41.4 7.5 21 188-208 121-141 (343)
292 1e9r_A Conjugal transfer prote 55.1 8.8 0.0003 45.8 4.9 19 188-206 52-70 (437)
293 4b4t_L 26S protease subunit RP 55.1 3.5 0.00012 48.8 1.3 52 768-823 178-232 (437)
294 2qz4_A Paraplegin; AAA+, SPG7, 54.8 4.3 0.00015 44.5 1.8 51 769-823 4-56 (262)
295 4b4t_L 26S protease subunit RP 54.7 4.8 0.00017 47.7 2.3 52 151-206 178-232 (437)
296 2qz4_A Paraplegin; AAA+, SPG7, 54.1 5.2 0.00018 43.9 2.4 19 188-206 38-56 (262)
297 3cmu_A Protein RECA, recombina 54.1 8.7 0.0003 53.9 4.9 92 803-966 1424-1518(2050)
298 4b4t_I 26S protease regulatory 53.7 5.3 0.00018 46.8 2.4 52 768-823 179-233 (437)
299 2i1q_A DNA repair and recombin 53.4 27 0.00092 39.5 8.4 24 187-210 96-119 (322)
300 2bjv_A PSP operon transcriptio 52.3 7.7 0.00026 42.6 3.4 20 187-206 27-46 (265)
301 1e9r_A Conjugal transfer prote 52.2 8.7 0.0003 45.9 4.1 25 806-831 53-77 (437)
302 4b4t_H 26S protease regulatory 52.0 5.1 0.00018 47.4 2.0 52 768-823 206-260 (467)
303 4b4t_I 26S protease regulatory 51.8 7.4 0.00025 45.6 3.2 52 151-206 179-233 (437)
304 4b4t_K 26S protease regulatory 51.7 4.6 0.00016 47.7 1.5 52 768-823 169-223 (428)
305 2bjv_A PSP operon transcriptio 51.4 7.5 0.00026 42.7 3.1 20 804-823 27-46 (265)
306 2dr3_A UPF0273 protein PH0284; 50.9 11 0.00038 40.6 4.4 23 186-208 20-42 (247)
307 4b4t_H 26S protease regulatory 50.8 5.7 0.00019 47.1 2.0 52 151-206 206-260 (467)
308 3h4m_A Proteasome-activating n 50.8 6 0.0002 44.1 2.2 52 768-823 14-68 (285)
309 3a8t_A Adenylate isopentenyltr 50.2 6.6 0.00023 44.6 2.4 18 807-824 41-58 (339)
310 4b4t_K 26S protease regulatory 50.0 6.4 0.00022 46.5 2.3 52 151-206 169-223 (428)
311 3foz_A TRNA delta(2)-isopenten 50.0 7.8 0.00027 43.4 2.9 18 191-208 12-29 (316)
312 2b8t_A Thymidine kinase; deoxy 50.0 9.1 0.00031 40.8 3.4 33 929-965 69-101 (223)
313 3a8t_A Adenylate isopentenyltr 49.6 7.9 0.00027 44.0 2.9 19 190-208 41-59 (339)
314 2eyu_A Twitching motility prot 49.6 7.8 0.00027 42.6 2.8 21 186-206 22-42 (261)
315 3exa_A TRNA delta(2)-isopenten 49.6 8 0.00027 43.4 2.9 19 190-208 4-22 (322)
316 2w58_A DNAI, primosome compone 49.4 8.6 0.00029 40.2 3.1 18 190-207 55-72 (202)
317 2gza_A Type IV secretion syste 49.3 9.3 0.00032 44.3 3.6 23 184-206 170-192 (361)
318 3foz_A TRNA delta(2)-isopenten 49.2 7 0.00024 43.8 2.4 17 808-824 12-28 (316)
319 3exa_A TRNA delta(2)-isopenten 49.2 7.1 0.00024 43.8 2.4 17 808-824 5-21 (322)
320 2gza_A Type IV secretion syste 48.9 8.8 0.0003 44.5 3.3 22 801-822 170-191 (361)
321 2eyu_A Twitching motility prot 48.6 7.4 0.00025 42.8 2.4 21 803-823 22-42 (261)
322 3h4m_A Proteasome-activating n 48.5 8.7 0.0003 42.7 3.1 51 152-206 15-68 (285)
323 2qmh_A HPR kinase/phosphorylas 48.5 8 0.00028 40.2 2.5 19 805-823 33-51 (205)
324 1jbk_A CLPB protein; beta barr 48.3 7.3 0.00025 39.8 2.3 18 189-206 43-60 (195)
325 1ixz_A ATP-dependent metallopr 48.1 4.2 0.00014 44.5 0.4 52 768-823 13-66 (254)
326 3vfd_A Spastin; ATPase, microt 47.8 10 0.00035 44.4 3.8 18 189-206 148-165 (389)
327 1u0j_A DNA replication protein 47.6 23 0.00078 38.7 6.1 44 161-207 74-122 (267)
328 1jbk_A CLPB protein; beta barr 47.4 7.1 0.00024 40.0 2.0 18 806-823 43-60 (195)
329 2orw_A Thymidine kinase; TMTK, 47.1 14 0.00046 38.2 4.1 20 806-825 3-22 (184)
330 2p65_A Hypothetical protein PF 46.5 6.8 0.00023 39.9 1.7 19 189-207 43-61 (187)
331 1ojl_A Transcriptional regulat 46.1 10 0.00036 42.7 3.3 19 188-206 24-42 (304)
332 1kgd_A CASK, peripheral plasma 45.8 11 0.00038 38.6 3.2 19 188-206 4-22 (180)
333 2x8a_A Nuclear valosin-contain 45.8 3.6 0.00012 45.7 -0.6 52 768-823 7-61 (274)
334 1ojl_A Transcriptional regulat 45.7 9.7 0.00033 42.9 2.9 20 804-823 23-42 (304)
335 3bgw_A DNAB-like replicative h 45.6 7 0.00024 46.7 1.8 26 803-828 194-219 (444)
336 1ixz_A ATP-dependent metallopr 45.5 8 0.00027 42.2 2.1 17 190-206 50-66 (254)
337 1xwi_A SKD1 protein; VPS4B, AA 45.3 18 0.00063 41.0 5.2 50 768-823 9-62 (322)
338 3nbx_X ATPase RAVA; AAA+ ATPas 45.2 14 0.00048 44.7 4.4 22 185-206 37-58 (500)
339 2p65_A Hypothetical protein PF 45.0 6.5 0.00022 40.1 1.2 18 806-823 43-60 (187)
340 3vaa_A Shikimate kinase, SK; s 44.9 11 0.00039 39.2 3.1 22 187-208 23-44 (199)
341 2qmh_A HPR kinase/phosphorylas 44.8 11 0.00036 39.4 2.7 19 188-206 33-51 (205)
342 3bos_A Putative DNA replicatio 44.7 11 0.00038 40.3 3.2 20 188-207 51-70 (242)
343 1kgd_A CASK, peripheral plasma 44.7 10 0.00035 38.8 2.7 19 805-823 4-22 (180)
344 3trf_A Shikimate kinase, SK; a 44.4 9.4 0.00032 39.1 2.4 20 189-208 5-24 (185)
345 4ag6_A VIRB4 ATPase, type IV s 44.4 15 0.00051 43.0 4.4 21 188-208 34-54 (392)
346 3syl_A Protein CBBX; photosynt 44.4 8.8 0.0003 43.2 2.3 19 189-207 67-85 (309)
347 1iy2_A ATP-dependent metallopr 44.0 5.3 0.00018 44.4 0.3 53 768-823 37-90 (278)
348 3bos_A Putative DNA replicatio 43.9 10 0.00035 40.5 2.7 19 805-823 51-69 (242)
349 3vaa_A Shikimate kinase, SK; s 43.8 11 0.00036 39.4 2.7 21 804-824 23-43 (199)
350 2x8a_A Nuclear valosin-contain 43.8 5 0.00017 44.6 0.1 52 151-206 7-61 (274)
351 2ze6_A Isopentenyl transferase 43.7 9.1 0.00031 41.8 2.2 17 191-207 3-19 (253)
352 2pt7_A CAG-ALFA; ATPase, prote 43.6 11 0.00038 43.0 3.0 21 185-205 167-187 (330)
353 2pt7_A CAG-ALFA; ATPase, prote 43.5 10 0.00035 43.3 2.7 22 801-822 166-187 (330)
354 3nbx_X ATPase RAVA; AAA+ ATPas 43.3 14 0.00049 44.6 4.1 55 1358-1413 382-439 (500)
355 1lvg_A Guanylate kinase, GMP k 43.3 13 0.00043 38.9 3.1 19 188-206 3-21 (198)
356 3syl_A Protein CBBX; photosynt 43.2 8.4 0.00029 43.4 1.9 19 806-824 67-85 (309)
357 1lvg_A Guanylate kinase, GMP k 42.5 11 0.00038 39.3 2.6 19 805-823 3-21 (198)
358 3hws_A ATP-dependent CLP prote 42.5 10 0.00036 43.9 2.6 20 188-207 50-69 (363)
359 2qor_A Guanylate kinase; phosp 42.2 11 0.00039 39.4 2.6 21 186-206 9-29 (204)
360 1ofh_A ATP-dependent HSL prote 41.8 12 0.00042 41.9 3.0 18 806-823 50-67 (310)
361 3tau_A Guanylate kinase, GMP k 41.6 14 0.00047 38.9 3.1 19 188-206 7-25 (208)
362 3hws_A ATP-dependent CLP prote 41.5 9.9 0.00034 44.1 2.2 19 805-823 50-68 (363)
363 3lw7_A Adenylate kinase relate 41.5 11 0.00036 38.0 2.2 17 191-207 3-19 (179)
364 1ofh_A ATP-dependent HSL prote 41.5 29 0.00099 38.7 6.1 18 189-206 50-67 (310)
365 3trf_A Shikimate kinase, SK; a 41.4 12 0.00041 38.3 2.6 20 806-825 5-24 (185)
366 3b9p_A CG5977-PA, isoform A; A 41.3 11 0.00037 42.2 2.4 18 189-206 54-71 (297)
367 3tau_A Guanylate kinase, GMP k 41.1 12 0.00042 39.3 2.7 19 805-823 7-25 (208)
368 2r44_A Uncharacterized protein 41.1 9.9 0.00034 43.4 2.1 22 185-206 42-63 (331)
369 3crm_A TRNA delta(2)-isopenten 41.0 13 0.00044 42.1 2.9 19 190-208 6-24 (323)
370 2ze6_A Isopentenyl transferase 41.0 11 0.00038 41.1 2.4 17 808-824 3-19 (253)
371 3iij_A Coilin-interacting nucl 40.9 13 0.00044 37.9 2.7 21 187-207 9-29 (180)
372 3b9p_A CG5977-PA, isoform A; A 40.8 9.9 0.00034 42.5 2.0 53 768-823 18-71 (297)
373 2ffh_A Protein (FFH); SRP54, s 40.6 53 0.0018 38.6 8.3 21 188-208 97-117 (425)
374 2ewv_A Twitching motility prot 40.3 12 0.00043 43.4 2.8 21 186-206 133-153 (372)
375 4ag6_A VIRB4 ATPase, type IV s 40.2 21 0.0007 41.8 4.7 21 805-825 34-54 (392)
376 1qhx_A CPT, protein (chloramph 40.2 12 0.00041 38.0 2.4 19 189-207 3-21 (178)
377 3crm_A TRNA delta(2)-isopenten 40.0 12 0.0004 42.4 2.4 17 808-824 7-23 (323)
378 3d3q_A TRNA delta(2)-isopenten 39.7 14 0.00047 42.1 2.9 17 191-207 9-25 (340)
379 3jvv_A Twitching mobility prot 39.5 13 0.00046 42.7 2.8 19 188-206 122-140 (356)
380 1zp6_A Hypothetical protein AT 39.3 11 0.00038 38.8 1.9 21 186-206 6-26 (191)
381 1iy2_A ATP-dependent metallopr 39.3 11 0.00036 41.9 1.9 17 190-206 74-90 (278)
382 1p9r_A General secretion pathw 39.3 18 0.00063 42.6 4.0 18 805-822 166-183 (418)
383 1ex7_A Guanylate kinase; subst 39.2 12 0.00042 38.6 2.2 16 190-205 2-17 (186)
384 1njg_A DNA polymerase III subu 39.1 16 0.00054 38.9 3.2 16 808-823 47-62 (250)
385 1lv7_A FTSH; alpha/beta domain 39.1 12 0.00042 40.7 2.4 18 189-206 45-62 (257)
386 2r44_A Uncharacterized protein 39.0 12 0.0004 42.7 2.3 22 802-823 42-63 (331)
387 3ney_A 55 kDa erythrocyte memb 39.0 16 0.00056 38.0 3.2 19 188-206 18-36 (197)
388 2ewv_A Twitching motility prot 38.7 12 0.00041 43.5 2.3 21 803-823 133-153 (372)
389 3lw7_A Adenylate kinase relate 38.7 11 0.00037 38.0 1.8 17 808-824 3-19 (179)
390 3d3q_A TRNA delta(2)-isopenten 38.7 13 0.00044 42.4 2.4 17 808-824 9-25 (340)
391 3ney_A 55 kDa erythrocyte memb 38.5 15 0.00051 38.3 2.7 19 805-823 18-36 (197)
392 3eie_A Vacuolar protein sortin 38.5 12 0.00043 42.4 2.4 53 151-206 15-68 (322)
393 3eph_A TRNA isopentenyltransfe 38.4 15 0.0005 42.9 2.9 18 191-208 4-21 (409)
394 3b85_A Phosphate starvation-in 38.4 27 0.00092 36.7 4.8 31 792-823 9-39 (208)
395 1lv7_A FTSH; alpha/beta domain 38.3 12 0.0004 40.9 2.0 52 768-823 9-62 (257)
396 3uk6_A RUVB-like 2; hexameric 38.3 12 0.00042 43.2 2.3 19 189-207 70-88 (368)
397 1ry6_A Internal kinesin; kines 38.2 15 0.0005 42.3 2.8 21 803-823 80-102 (360)
398 2j9r_A Thymidine kinase; TK1, 38.1 26 0.00088 36.9 4.5 22 189-210 28-49 (214)
399 3eph_A TRNA isopentenyltransfe 38.1 13 0.00043 43.4 2.3 17 808-824 4-20 (409)
400 1zp6_A Hypothetical protein AT 38.0 10 0.00035 39.1 1.4 21 803-823 6-26 (191)
401 3jvv_A Twitching mobility prot 38.0 13 0.00046 42.7 2.5 18 805-822 122-139 (356)
402 1xwi_A SKD1 protein; VPS4B, AA 38.0 13 0.00044 42.3 2.4 54 151-207 9-63 (322)
403 1njg_A DNA polymerase III subu 37.9 17 0.00057 38.7 3.2 16 191-206 47-62 (250)
404 2j41_A Guanylate kinase; GMP, 37.8 17 0.00058 37.8 3.2 20 187-206 4-23 (207)
405 3uk6_A RUVB-like 2; hexameric 37.6 11 0.00039 43.5 1.9 19 806-824 70-88 (368)
406 2qor_A Guanylate kinase; phosp 37.6 13 0.00043 39.0 2.0 21 803-823 9-29 (204)
407 2chg_A Replication factor C sm 37.3 20 0.00069 37.4 3.7 17 190-206 39-55 (226)
408 1qhx_A CPT, protein (chloramph 37.3 13 0.00043 37.8 2.0 19 806-824 3-21 (178)
409 3tr0_A Guanylate kinase, GMP k 37.2 18 0.0006 37.7 3.1 20 187-206 5-24 (205)
410 1kag_A SKI, shikimate kinase I 37.1 16 0.00054 36.9 2.7 18 189-206 4-21 (173)
411 3iij_A Coilin-interacting nucl 37.0 14 0.00047 37.7 2.2 21 804-824 9-29 (180)
412 2j41_A Guanylate kinase; GMP, 36.9 16 0.00054 38.1 2.7 20 804-823 4-23 (207)
413 1ex7_A Guanylate kinase; subst 36.9 12 0.00042 38.6 1.8 16 807-822 2-17 (186)
414 1y63_A LMAJ004144AAA protein; 36.9 14 0.00048 37.9 2.2 20 188-207 9-28 (184)
415 3t15_A Ribulose bisphosphate c 36.5 14 0.00048 41.3 2.3 20 188-207 35-54 (293)
416 2ffh_A Protein (FFH); SRP54, s 36.4 59 0.002 38.3 7.7 20 805-824 97-116 (425)
417 2zts_A Putative uncharacterize 36.3 19 0.00065 38.7 3.4 20 805-824 29-48 (251)
418 1um8_A ATP-dependent CLP prote 36.2 15 0.00052 42.7 2.7 19 189-207 72-90 (376)
419 1ry6_A Internal kinesin; kines 36.0 17 0.00059 41.7 3.0 20 186-205 80-101 (360)
420 3b85_A Phosphate starvation-in 35.9 28 0.00097 36.5 4.5 31 175-206 9-39 (208)
421 2qp9_X Vacuolar protein sortin 35.8 15 0.00053 42.3 2.6 19 189-207 84-102 (355)
422 4gp7_A Metallophosphoesterase; 35.8 14 0.00046 37.6 1.9 21 187-207 7-27 (171)
423 3t15_A Ribulose bisphosphate c 35.7 13 0.00043 41.7 1.8 18 806-823 36-53 (293)
424 3tr0_A Guanylate kinase, GMP k 35.5 17 0.00058 37.8 2.7 20 804-823 5-24 (205)
425 1ly1_A Polynucleotide kinase; 35.3 15 0.00052 37.2 2.2 16 191-206 4-19 (181)
426 4gp7_A Metallophosphoesterase; 35.1 12 0.00042 37.9 1.4 21 804-824 7-27 (171)
427 1um8_A ATP-dependent CLP prote 34.9 14 0.0005 42.9 2.2 19 806-824 72-90 (376)
428 3bh0_A DNAB-like replicative h 34.8 35 0.0012 38.5 5.3 24 185-208 64-87 (315)
429 2j9r_A Thymidine kinase; TK1, 34.6 25 0.00085 37.0 3.7 23 806-828 28-50 (214)
430 2qp9_X Vacuolar protein sortin 34.6 15 0.0005 42.5 2.1 50 768-823 48-101 (355)
431 1q57_A DNA primase/helicase; d 34.3 13 0.00044 45.3 1.7 23 803-825 239-261 (503)
432 3vkg_A Dynein heavy chain, cyt 34.2 32 0.0011 50.7 5.8 49 776-825 874-925 (3245)
433 1y63_A LMAJ004144AAA protein; 34.2 15 0.00052 37.6 2.0 20 805-824 9-28 (184)
434 1z6g_A Guanylate kinase; struc 34.2 19 0.00065 38.1 2.8 21 803-823 20-40 (218)
435 1z6g_A Guanylate kinase; struc 34.2 22 0.00076 37.6 3.4 21 186-206 20-40 (218)
436 1p9r_A General secretion pathw 34.1 18 0.0006 42.7 2.7 18 188-205 166-183 (418)
437 3cm0_A Adenylate kinase; ATP-b 33.9 14 0.00047 37.9 1.6 21 188-208 3-23 (186)
438 3d8b_A Fidgetin-like protein 1 33.7 17 0.00057 42.0 2.4 20 188-207 116-135 (357)
439 3gk5_A Uncharacterized rhodane 33.6 22 0.00076 32.7 2.8 37 1077-1113 55-91 (108)
440 1hqc_A RUVB; extended AAA-ATPa 33.5 14 0.00049 41.7 1.8 18 806-823 38-55 (324)
441 3kb2_A SPBC2 prophage-derived 33.5 17 0.00059 36.4 2.2 17 191-207 3-19 (173)
442 2zts_A Putative uncharacterize 33.4 26 0.00091 37.5 3.9 22 187-208 28-49 (251)
443 3pfi_A Holliday junction ATP-d 33.4 17 0.00058 41.4 2.4 17 190-206 56-72 (338)
444 1kag_A SKI, shikimate kinase I 33.2 20 0.00069 36.0 2.7 18 806-823 4-21 (173)
445 2c9o_A RUVB-like 1; hexameric 33.0 15 0.00052 44.0 2.0 20 805-824 62-81 (456)
446 3d8b_A Fidgetin-like protein 1 33.0 16 0.00053 42.3 2.0 19 805-823 116-134 (357)
447 1g5t_A COB(I)alamin adenosyltr 32.8 39 0.0013 35.0 4.7 27 188-214 27-53 (196)
448 2r62_A Cell division protease 32.7 11 0.00037 41.4 0.6 19 189-207 44-62 (268)
449 1hqc_A RUVB; extended AAA-ATPa 32.7 15 0.00053 41.4 1.9 18 189-206 38-55 (324)
450 1kht_A Adenylate kinase; phosp 32.7 18 0.00063 36.9 2.4 19 189-207 3-21 (192)
451 1ly1_A Polynucleotide kinase; 32.6 16 0.00054 37.1 1.8 16 808-823 4-19 (181)
452 2c9o_A RUVB-like 1; hexameric 32.6 20 0.0007 42.9 3.0 20 188-207 62-81 (456)
453 2ce7_A Cell division protein F 32.6 15 0.00051 44.1 1.7 51 769-823 14-66 (476)
454 3a00_A Guanylate kinase, GMP k 32.2 25 0.00086 36.0 3.3 17 190-206 2-18 (186)
455 1s96_A Guanylate kinase, GMP k 32.2 19 0.00066 38.2 2.4 21 186-206 13-33 (219)
456 2c95_A Adenylate kinase 1; tra 32.0 22 0.00074 36.6 2.8 22 186-207 6-27 (196)
457 3a00_A Guanylate kinase, GMP k 31.9 22 0.00075 36.5 2.7 17 807-823 2-18 (186)
458 2r2a_A Uncharacterized protein 31.9 26 0.00088 36.6 3.3 18 191-208 7-24 (199)
459 3kb2_A SPBC2 prophage-derived 31.6 17 0.00057 36.5 1.8 17 808-824 3-19 (173)
460 4fcw_A Chaperone protein CLPB; 31.6 17 0.0006 40.7 2.1 18 190-207 48-65 (311)
461 2r62_A Cell division protease 31.6 10 0.00035 41.6 0.1 19 806-824 44-62 (268)
462 2cvh_A DNA repair and recombin 31.5 24 0.00083 37.0 3.1 23 186-208 17-39 (220)
463 1tue_A Replication protein E1; 31.4 21 0.00071 37.4 2.4 17 190-206 59-75 (212)
464 3f9v_A Minichromosome maintena 31.4 22 0.00076 44.1 3.1 16 191-206 329-344 (595)
465 4fcw_A Chaperone protein CLPB; 31.2 16 0.00055 41.0 1.7 18 807-824 48-65 (311)
466 2ce7_A Cell division protein F 31.2 22 0.00074 42.7 2.9 18 189-206 49-66 (476)
467 1sxj_D Activator 1 41 kDa subu 31.2 25 0.00086 40.2 3.4 17 190-206 59-75 (353)
468 1knq_A Gluconate kinase; ALFA/ 31.2 19 0.00064 36.4 2.0 19 189-207 8-26 (175)
469 1g8p_A Magnesium-chelatase 38 30.8 20 0.00069 40.9 2.5 18 806-823 45-62 (350)
470 4eun_A Thermoresistant glucoki 30.7 21 0.00073 37.1 2.4 20 188-207 28-47 (200)
471 1knq_A Gluconate kinase; ALFA/ 30.7 17 0.00059 36.7 1.7 20 805-824 7-26 (175)
472 2rhm_A Putative kinase; P-loop 30.7 19 0.00064 37.0 2.0 19 189-207 5-23 (193)
473 1wv9_A Rhodanese homolog TT165 30.7 30 0.001 30.8 3.1 35 1078-1112 54-88 (94)
474 1g8p_A Magnesium-chelatase 38 30.3 16 0.00054 41.8 1.5 18 189-206 45-62 (350)
475 1kht_A Adenylate kinase; phosp 30.2 19 0.00066 36.8 2.0 18 806-823 3-20 (192)
476 2bwj_A Adenylate kinase 5; pho 30.1 21 0.00072 36.8 2.3 20 188-207 11-30 (199)
477 1sxj_D Activator 1 41 kDa subu 30.1 25 0.00085 40.2 3.1 17 807-823 59-75 (353)
478 2w0m_A SSO2452; RECA, SSPF, un 30.1 31 0.001 36.5 3.7 22 186-207 20-41 (235)
479 4eun_A Thermoresistant glucoki 30.0 20 0.00068 37.3 2.1 19 805-823 28-46 (200)
480 3lnc_A Guanylate kinase, GMP k 29.9 20 0.00069 38.2 2.1 21 803-823 24-44 (231)
481 2ius_A DNA translocase FTSK; n 29.8 50 0.0017 39.8 5.7 21 804-824 165-185 (512)
482 3vkg_A Dynein heavy chain, cyt 29.8 41 0.0014 49.6 5.7 49 158-207 873-924 (3245)
483 1f2t_A RAD50 ABC-ATPase; DNA d 29.6 22 0.00076 35.0 2.2 15 191-205 25-39 (149)
484 2ehv_A Hypothetical protein PH 29.5 31 0.0011 37.0 3.7 24 185-208 26-49 (251)
485 2ius_A DNA translocase FTSK; n 29.4 34 0.0011 41.3 4.1 26 187-212 165-190 (512)
486 2v54_A DTMP kinase, thymidylat 29.3 23 0.00078 36.8 2.4 20 188-207 3-22 (204)
487 1iqp_A RFCS; clamp loader, ext 29.3 27 0.00093 39.3 3.2 17 191-207 48-64 (327)
488 1iqp_A RFCS; clamp loader, ext 29.3 27 0.00094 39.3 3.3 16 808-823 48-63 (327)
489 2r2a_A Uncharacterized protein 29.3 26 0.00088 36.6 2.7 43 954-998 88-132 (199)
490 2cvh_A DNA repair and recombin 29.3 24 0.00082 37.0 2.6 21 805-825 19-39 (220)
491 3t61_A Gluconokinase; PSI-biol 29.2 22 0.00075 36.9 2.2 18 190-207 19-36 (202)
492 3lda_A DNA repair protein RAD5 29.1 66 0.0023 37.5 6.5 20 188-207 177-196 (400)
493 3cm0_A Adenylate kinase; ATP-b 29.1 16 0.00056 37.3 1.2 20 805-824 3-22 (186)
494 1m7g_A Adenylylsulfate kinase; 28.9 31 0.0011 36.2 3.3 31 175-207 13-43 (211)
495 1zd8_A GTP:AMP phosphotransfer 28.9 23 0.00077 37.7 2.3 20 188-207 6-25 (227)
496 1tue_A Replication protein E1; 28.9 21 0.00071 37.4 1.8 44 778-823 29-75 (212)
497 1znw_A Guanylate kinase, GMP k 28.8 26 0.00088 36.7 2.7 25 803-827 17-41 (207)
498 1gvn_B Zeta; postsegregational 28.7 22 0.00076 39.5 2.2 19 189-207 33-51 (287)
499 2zan_A Vacuolar protein sortin 28.6 22 0.00077 42.3 2.4 54 151-207 131-185 (444)
500 1s96_A Guanylate kinase, GMP k 28.5 26 0.0009 37.1 2.7 21 803-823 13-33 (219)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.5e-77 Score=822.33 Aligned_cols=819 Identities=18% Similarity=0.206 Sum_probs=521.9
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
||++++++|++++|.++..++|+++|||||||||++|.+++++.+.+......
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~--------------------------- 128 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDG--------------------------- 128 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTS---------------------------
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccc---------------------------
Confidence 89999999999999888889999999999999999999999999875432111
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
.....+.++||++||++||.|+++.|.+.+...|++|..++|++..... ....++|+||||+++..++. ...
T Consensus 129 ----~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr-~~~ 200 (1724)
T 4f92_B 129 ----TINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITR-KGG 200 (1724)
T ss_dssp ----SCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTT-SST
T ss_pred ----cccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHc-CCc
Confidence 1123567899999999999999999999888899999999999765432 12457999999999744443 333
Q ss_pred cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
....+.++++|||||+|.+ +..++..++.++.++... ....+.+.|+|++|||
T Consensus 201 ~~~~l~~v~~vIiDEvH~l-~d~RG~~lE~~l~rl~~~--------------------------~~~~~~~~riI~LSAT 253 (1724)
T 4f92_B 201 ERTYTQLVRLIILDEIHLL-HDDRGPVLEALVARAIRN--------------------------IEMTQEDVRLIGLSAT 253 (1724)
T ss_dssp THHHHTTEEEEEETTGGGG-GSTTHHHHHHHHHHHHHH--------------------------HHHHTCCCEEEEEECS
T ss_pred cchhhcCcCEEEEecchhc-CCccHHHHHHHHHHHHHH--------------------------HHhCCCCCcEEEEecc
Confidence 3334678999999999955 557888888888765321 0011456799999999
Q ss_pred cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcc-cchhhhhccccccchhhhhhccCCcchhhHHHHhcCC
Q psy16310 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI-VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 488 (1493)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (1493)
+|+.- .+.+|+....... ..+...++ +..+.+..+.....
T Consensus 254 l~N~~------------------------dvA~wL~~~~~~~~~~~~~~~R-PvpL~~~~~~~~~~-------------- 294 (1724)
T 4f92_B 254 LPNYE------------------------DVATFLRVDPAKGLFYFDNSFR-PVPLEQTYVGITEK-------------- 294 (1724)
T ss_dssp CTTHH------------------------HHHHHTTCCHHHHEEECCGGGC-SSCEEEECCEECCC--------------
T ss_pred cCCHH------------------------HHHHHhCCCCCCCeEEECCCCc-cCccEEEEeccCCc--------------
Confidence 98521 1222322110000 00000000 00000000000000
Q ss_pred CcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC--CCcEEEEecchhhHHHHHHHHHh
Q psy16310 489 GRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTM 566 (1493)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~IIF~~s~~~a~~L~~~L~~ 566 (1493)
...... ......+...+... .+++||||+||..|+.++..|..
T Consensus 295 --~~~~~~---------------------------------~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~ 339 (1724)
T 4f92_B 295 --KAIKRF---------------------------------QIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRD 339 (1724)
T ss_dssp --CHHHHH---------------------------------HHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHH
T ss_pred --chhhhh---------------------------------HHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHH
Confidence 000000 00001122222222 46899999999999988887742
Q ss_pred -------------------------------------cCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCC
Q psy16310 567 -------------------------------------LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 609 (1493)
Q Consensus 567 -------------------------------------~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlD 609 (1493)
...+++.|||+|++.+|..+.+.|++|.++|||||+++++|||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVN 419 (1724)
T 4f92_B 340 MCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVN 419 (1724)
T ss_dssp HHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSC
T ss_pred HHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCC
Confidence 1345788999999999999999999999999999999999999
Q ss_pred CCCCcEEEE----ecC------CCChHHHHHHHhccccCCC--CCeEEEEecCCcchhhhhhhhhhccchHH-------H
Q psy16310 610 IPGIEHVIH----YHV------PRTSEIYIHRSGRTARANN--EGLTVVLIESDEIPLKTKFNLQEEENNEE-------E 670 (1493)
Q Consensus 610 ip~v~~VI~----yd~------P~s~~~yiQR~GRagR~g~--~G~~i~l~~~~e~~~~~~l~~~~~~~~e~-------~ 670 (1493)
+|++++||. ||. |.++.+|+||+|||||.|. .|.++++.++++...+..+.....+.+.. -
T Consensus 420 lPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~ 499 (1724)
T 4f92_B 420 LPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM 499 (1724)
T ss_dssp CCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHH
T ss_pred CCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHH
Confidence 999999995 553 5689999999999999875 69999999999988777664433221100 0
Q ss_pred HHHHhh------------------------h------------c---ccccch-hhhhhhhhhhhccC-----CCC-ccc
Q psy16310 671 ERAEAD------------------------K------------E---KTEDIN-VTVSSKKKKLKRKQ-----NPS-QVE 704 (1493)
Q Consensus 671 e~~~~~------------------------~------------~---~~e~~~-~~vss~k~k~kr~~-----~~s-~~e 704 (1493)
...+.. . . ..+... .-+...-..+.+.. ... ...
T Consensus 500 L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~ 579 (1724)
T 4f92_B 500 LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQ 579 (1724)
T ss_dssp HHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEE
T ss_pred HHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccc
Confidence 000000 0 0 000000 00000000000000 000 000
Q ss_pred c----------------------------------------cccccCCCCCCc--------------ccccccccc----
Q psy16310 705 V----------------------------------------SELSANTNDPDD--------------QVNKTEEIQ---- 726 (1493)
Q Consensus 705 ~----------------------------------------~e~~~~~~~~~~--------------~~~~~~~~~---- 726 (1493)
. .+...-....++ .....++..
T Consensus 580 ~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~Kv~ 659 (1724)
T 4f92_B 580 VTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKIN 659 (1724)
T ss_dssp ECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHHHHSSSCCCSCCSSHHHHHH
T ss_pred cchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHHHHHHHhcCCCCcCCCCCChHHHHH
Confidence 0 000000000000 000000000
Q ss_pred ---------cCCcch----------------------------------------hh----------------------h
Q psy16310 727 ---------SDEPHS----------------------------------------KK----------------------L 735 (1493)
Q Consensus 727 ---------~~~~~~----------------------------------------~~----------------------~ 735 (1493)
...+.. +. .
T Consensus 660 ~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~w~~~~~L~q~~~i~~~~~ 739 (1724)
T 4f92_B 660 VLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV 739 (1724)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTSCTTSCGGGGSTTSCHHHH
T ss_pred HHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCCceecCCCCCHHHH
Confidence 000000 00 0
Q ss_pred Hhhhhhcccchh---h--------------------------------c---------------------c---------
Q psy16310 736 KQKKKKKQTYTS---A--------------------------------N---------------------K--------- 750 (1493)
Q Consensus 736 ~~~~~~~~~~~~---~--------------------------------~---------------------~--------- 750 (1493)
++..+..-+... . + .
T Consensus 740 ~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~~~~~~~~~w~~~~h~~~~~ 819 (1724)
T 4f92_B 740 KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEA 819 (1724)
T ss_dssp HHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSEEEEEEEEEECSCCCTTTTTTEEE
T ss_pred HHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEEEEecCCceEEEEEEEeeccccchhhcCCcee
Confidence 000000000000 0 0 0
Q ss_pred -----------------------c----------cccccCCCcchh-------------------------------hhh
Q psy16310 751 -----------------------E----------LLEVDTSNNEDM-------------------------------FVQ 766 (1493)
Q Consensus 751 -----------------------~----------~~~~~~~~~~~~-------------------------------~~~ 766 (1493)
. .++...+-++.. +.+
T Consensus 820 ~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~~~~~~~~~~p~~~~~~t~ 899 (1724)
T 4f92_B 820 FWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTE 899 (1724)
T ss_dssp EEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEEEEECTTCCCCCCCCCCCC
T ss_pred EEEEEEecCCCeEEEEEEEEeeeeccCCceEEEEEEECCCCCCCeEEEEEEEccccCCCceeeeccccccCCCCCCCCCc
Confidence 0 000000000000 000
Q ss_pred cccccc---CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 767 MAEWVK---FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 767 ~~~f~~---l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
+..+.. -.|.+...++++..+|.+++|+|.++|+.++..++|++++||||||||++|.+||++.+..
T Consensus 900 lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~---------- 969 (1724)
T 4f92_B 900 LLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ---------- 969 (1724)
T ss_dssp CCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH----------
T ss_pred cccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh----------
Confidence 000000 1355677888999999999999999999888888999999999999999999999998854
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHH
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~ 922 (1493)
..+.++||++||++||.|+++.|.+ ++...+++|..++|+.......
T Consensus 970 ------------------------------~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~-- 1017 (1724)
T 4f92_B 970 ------------------------------SSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL-- 1017 (1724)
T ss_dssp ------------------------------CTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH--
T ss_pred ------------------------------CCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh--
Confidence 2334699999999999999999976 5566899999999986544332
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcc--cCCCCCceEEEEecccc
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM--TETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~--~~~~~~~q~ll~SATl~ 1000 (1493)
+ ..++|+|||||++..++++. .....+.++++||+||+|.|.+ .++..+..++.++.. ...+.+.|++++|||++
T Consensus 1018 ~-~~~~IiV~TPEkld~llr~~-~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~ 1094 (1724)
T 4f92_B 1018 L-GKGNIIISTPEKWDILSRRW-KQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLS 1094 (1724)
T ss_dssp H-HHCSEEEECHHHHHHHHTTT-TTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT
T ss_pred c-CCCCEEEECHHHHHHHHhCc-ccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC
Confidence 2 34699999999986666543 3334577899999999998766 577778777776642 23456789999999998
Q ss_pred cchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccch-------hhHHHHHH
Q psy16310 1001 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-------DSYLYYFI 1073 (1493)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-------~~~l~~~l 1073 (1493)
+.. .+..+++......+.+.... .+..+............ ...+...+
T Consensus 1095 N~~------------------------dla~WL~~~~~~~~~~~~~~-RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i 1149 (1724)
T 4f92_B 1095 NAK------------------------DVAHWLGCSATSTFNFHPNV-RPVPLELHIQGFNISHTQTRLLSMAKPVYHAI 1149 (1724)
T ss_dssp THH------------------------HHHHHHTCCSTTEEECCGGG-CSSCEEEEEEEECCCSHHHHHHTTHHHHHHHH
T ss_pred CHH------------------------HHHHHhCCCCCCeEEeCCCC-CCCCeEEEEEeccCCCchhhhhhhcchHHHHH
Confidence 532 12222222222222222111 11122222211111111 11122222
Q ss_pred H--hCCCcEEEEecchhhHHHHHHHHHhc----------------------------------CCCccccccCCCHHHHH
Q psy16310 1074 L--QHPGRTLVFCNSISSVKRLTQLLTML----------------------------------KCSPLPLHASMNQRQRL 1117 (1493)
Q Consensus 1074 ~--~~~~~~IVF~~s~~~~~~l~~~L~~~----------------------------------~~~~~~lhg~m~~~~R~ 1117 (1493)
. ...+++||||+|+..|+.++..|... ..+++.|||+|++.+|.
T Consensus 1150 ~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~ 1229 (1724)
T 4f92_B 1150 TKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERR 1229 (1724)
T ss_dssp HHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHH
T ss_pred HHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHH
Confidence 2 23679999999999999888766321 24578899999999999
Q ss_pred HHHHHHhcCCCCeEEeehhhhccccCCCccEEEE----e------cCCCChhHHHHHHhccCCCCC--CCeEEEEecCCC
Q psy16310 1118 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH----Y------HVPRTSEIYIHRSGRTARANN--EGLTLVLIESDE 1185 (1493)
Q Consensus 1118 ~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~----~------d~p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e 1185 (1493)
.+++.|++|.++|||||+++++|||+|++.+||. | ..|.+..+|+||+|||||+|. .|.|++++.+.+
T Consensus 1230 ~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~ 1309 (1724)
T 4f92_B 1230 LVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSK 1309 (1724)
T ss_dssp HHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGG
T ss_pred HHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchH
Confidence 9999999999999999999999999999999993 3 346789999999999999987 799999999999
Q ss_pred HHHHHHHHH
Q psy16310 1186 IPLYIKMFN 1194 (1493)
Q Consensus 1186 ~~~~~~~~~ 1194 (1493)
...+.+++.
T Consensus 1310 ~~~~~~ll~ 1318 (1724)
T 4f92_B 1310 KDFFKKFLY 1318 (1724)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888887753
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5e-55 Score=537.03 Aligned_cols=369 Identities=29% Similarity=0.470 Sum_probs=318.6
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 764 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
+.++.+|++++|++.++++|..+||.+|||+|.++||. +..|+|++++||||||||++|++|++++++.....
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~-i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~------ 124 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPV-ISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE------ 124 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC------
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc------
Confidence 34577899999999999999999999999999999995 55789999999999999999999999988653210
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l 923 (1493)
....++++|||+|||+||.|+++.+++++...++++.+++||.....+...+
T Consensus 125 ----------------------------~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 176 (434)
T 2db3_A 125 ----------------------------LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI 176 (434)
T ss_dssp ----------------------------CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH
T ss_pred ----------------------------cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh
Confidence 1234578999999999999999999999988899999999999999998888
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|+|||+|++++.++.. .+.++++|||||||+|++++|...+..++..+.. ...+|+++||||++..+
T Consensus 177 ~~~~~Ivv~Tp~~l~~~l~~~~~---~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~---~~~~q~l~~SAT~~~~~ 250 (434)
T 2db3_A 177 TRGCHVVIATPGRLLDFVDRTFI---TFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM---RPEHQTLMFSATFPEEI 250 (434)
T ss_dssp TTCCSEEEECHHHHHHHHHTTSC---CCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS---CSSCEEEEEESCCCHHH
T ss_pred hcCCCEEEEChHHHHHHHHhCCc---ccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC---CCCceEEEEeccCCHHH
Confidence 88999999999999999987653 3668899999999999999999999999887632 36789999999999877
Q ss_pred HhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEE
Q psy16310 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 1083 (1493)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF 1083 (1493)
....... +..+..+.+.........+.+.+..+....+...+..++.....++|||
T Consensus 251 ~~~~~~~------------------------l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF 306 (434)
T 2db3_A 251 QRMAGEF------------------------LKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVF 306 (434)
T ss_dssp HHHHHTT------------------------CSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCTTEEEE
T ss_pred HHHHHHh------------------------ccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCCCEEEE
Confidence 6554221 1223333333333345566777777888889999999998888889999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHH
Q psy16310 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163 (1493)
Q Consensus 1084 ~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiq 1163 (1493)
|+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+|++||+||+|.+..+|+|
T Consensus 307 ~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~q 386 (434)
T 2db3_A 307 VETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVH 386 (434)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHH
T ss_pred EeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCeEEEEecCC-CHHHHHHHHHhcc
Q psy16310 1164 RSGRTARANNEGLTLVLIESD-EIPLYIKMFNSLE 1197 (1493)
Q Consensus 1164 r~GR~gR~g~~G~~i~l~~~~-e~~~~~~~~~~~~ 1197 (1493)
|+|||||+|+.|.|++|+++. +......+.+.+.
T Consensus 387 riGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 387 RIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp HHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHH
T ss_pred HhcccccCCCCCEEEEEEeccccHHHHHHHHHHHH
Confidence 999999999999999999965 5555555555544
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.3e-53 Score=517.28 Aligned_cols=363 Identities=29% Similarity=0.471 Sum_probs=300.5
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
.++.+|++++|++.++++|.++||..|||+|.++|| .+..|+|++++||||||||++|++|+++++......
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~-~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~------- 124 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIP-VISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE------- 124 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-------
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHH-HHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-------
Confidence 356789999999999999999999999999999999 556889999999999999999999999998753211
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
....++++|||+|||+||.|+++.+..++...++++.+++||.....+...+.
T Consensus 125 ---------------------------~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~ 177 (434)
T 2db3_A 125 ---------------------------LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 177 (434)
T ss_dssp ---------------------------CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHT
T ss_pred ---------------------------cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhh
Confidence 11345789999999999999999999999888899999999999998888888
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.+++|+|+||++|++++.+.... +.++++|||||||+|++++|.+.+..++..+..
T Consensus 178 ~~~~Ivv~Tp~~l~~~l~~~~~~---l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~--------------------- 233 (434)
T 2db3_A 178 RGCHVVIATPGRLLDFVDRTFIT---FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM--------------------- 233 (434)
T ss_dssp TCCSEEEECHHHHHHHHHTTSCC---CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS---------------------
T ss_pred cCCCEEEEChHHHHHHHHhCCcc---cccCCeEEEccHhhhhccCcHHHHHHHHHhcCC---------------------
Confidence 89999999999999999876543 558999999999999999999999999876521
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
...+|+++||||++..+..+...... .+.......
T Consensus 234 ----------~~~~q~l~~SAT~~~~~~~~~~~~l~------------------------~~~~i~~~~----------- 268 (434)
T 2db3_A 234 ----------RPEHQTLMFSATFPEEIQRMAGEFLK------------------------NYVFVAIGI----------- 268 (434)
T ss_dssp ----------CSSCEEEEEESCCCHHHHHHHHTTCS------------------------SCEEEEESS-----------
T ss_pred ----------CCCceEEEEeccCCHHHHHHHHHhcc------------------------CCEEEEecc-----------
Confidence 34579999999999876654421110 000000000
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcE
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 547 (1493)
..............+....+...|..++.....++
T Consensus 269 ---------------------------------------------~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~ 303 (434)
T 2db3_A 269 ---------------------------------------------VGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGT 303 (434)
T ss_dssp ---------------------------------------------TTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCTTE
T ss_pred ---------------------------------------------ccccccccceEEEEeCcHHHHHHHHHHHHhCCCCE
Confidence 00000111122233344567777888888887789
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++++||||+|+|++||+||+|.++.+
T Consensus 304 lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~ 383 (434)
T 2db3_A 304 IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDD 383 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHH
T ss_pred EEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCC-cchhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESD-EIPLKTKF 659 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~-e~~~~~~l 659 (1493)
|+||+|||||+|+.|.|++|++++ +......+
T Consensus 384 y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l 416 (434)
T 2db3_A 384 YVHRIGRTGRVGNNGRATSFFDPEKDRAIAADL 416 (434)
T ss_dssp HHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHH
T ss_pred HHHHhcccccCCCCCEEEEEEeccccHHHHHHH
Confidence 999999999999999999999965 44444433
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-50 Score=497.22 Aligned_cols=385 Identities=30% Similarity=0.478 Sum_probs=313.5
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 764 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
+.++.+|+++++++.++++|...||..|||+|.++|| .+..++|++++||||||||++|++|+++.+.......
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~-~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~----- 84 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIP-IIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGE----- 84 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCH-----
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccc-----
Confidence 3456789999999999999999999999999999999 4557899999999999999999999999886532100
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l 923 (1493)
........ ........++++|||+||++||.|+++.++.++...++++..++||.....+...+
T Consensus 85 -----------~~~~~~~~-----~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 148 (417)
T 2i4i_A 85 -----------ALRAMKEN-----GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL 148 (417)
T ss_dssp -----------HHHHHHHC-----BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH
T ss_pred -----------hhhccccc-----cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh
Confidence 00000000 00011223468999999999999999999999988899999999999999888888
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|+||++|.+++..+.. .+.++++|||||||++++++|...+..++...... ....+|++++|||++..+
T Consensus 149 ~~~~~I~v~Tp~~l~~~l~~~~~---~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~-~~~~~~~i~~SAT~~~~~ 224 (417)
T 2i4i_A 149 ERGCHLLVATPGRLVDMMERGKI---GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP-PKGVRHTMMFSATFPKEI 224 (417)
T ss_dssp TTCCSEEEECHHHHHHHHHTTSB---CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC-CBTTBEEEEEESCCCHHH
T ss_pred hCCCCEEEEChHHHHHHHHcCCc---ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC-CcCCcEEEEEEEeCCHHH
Confidence 88899999999999999987653 35678999999999999999999998888754221 123689999999999776
Q ss_pred HhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC--CCcEE
Q psy16310 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PGRTL 1081 (1493)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~I 1081 (1493)
...+... +..+..+...........+.+.+..+....+...+..++... .+++|
T Consensus 225 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 280 (417)
T 2i4i_A 225 QMLARDF------------------------LDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTL 280 (417)
T ss_dssp HHHHHHH------------------------CSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEE
T ss_pred HHHHHHH------------------------cCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEE
Confidence 5544221 112223333333334455666677777788888888888765 57899
Q ss_pred EEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHH
Q psy16310 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161 (1493)
Q Consensus 1082 VF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~y 1161 (1493)
|||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|
T Consensus 281 Vf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~ 360 (417)
T 2i4i_A 281 VFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 360 (417)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHH
T ss_pred EEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1162 iqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
+||+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 361 ~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 361 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp HHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred HHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 9999999999999999999999998888877766543
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1e-49 Score=489.25 Aligned_cols=362 Identities=27% Similarity=0.502 Sum_probs=308.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..+|+++++++.++++|...||..|+|+|.++|+. +..++|++++||||||||++|++|+++.+..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------------- 101 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQ-IIKGRDVIAQSQSGTGKTATFSISVLQCLDI------------- 101 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------------
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCCchHHHHHHHHHHHhh-------------
Confidence 45799999999999999999999999999999995 5577899999999999999999999986521
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...+.++|||+||++|+.|+++.+..++...++.+..++||.....+...+..+
T Consensus 102 --------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 155 (410)
T 2j0s_A 102 --------------------------QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 155 (410)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHC
T ss_pred --------------------------ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcC
Confidence 124467999999999999999999999988999999999999998888888778
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+||++|.+++..+.. .+.++++||+||||++++++|...+..++..+ +...|++++|||++..+...
T Consensus 156 ~~ivv~Tp~~l~~~l~~~~~---~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~ 227 (410)
T 2j0s_A 156 QHVVAGTPGRVFDMIRRRSL---RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL-----PPATQVVLISATLPHEILEM 227 (410)
T ss_dssp CSEEEECHHHHHHHHHTTSS---CCTTCCEEEEETHHHHTSTTTHHHHHHHHTTS-----CTTCEEEEEESCCCHHHHTT
T ss_pred CCEEEcCHHHHHHHHHhCCc---cHhheeEEEEccHHHHHhhhhHHHHHHHHHhC-----ccCceEEEEEcCCCHHHHHH
Confidence 89999999999999987653 35578999999999999999998888888766 46789999999999765543
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc-hhhHHHHHHHh-CCCcEEEEe
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQ-HPGRTLVFC 1084 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~-~~~~~IVF~ 1084 (1493)
+... +..+..+...........+.+.+..+.... +...+..++.. ..+++||||
T Consensus 228 ~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~ 283 (410)
T 2j0s_A 228 TNKF------------------------MTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFC 283 (410)
T ss_dssp GGGT------------------------CSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEEC
T ss_pred HHHH------------------------cCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEE
Confidence 3211 112222222222233344555555555444 66666666654 357999999
Q ss_pred cchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHH
Q psy16310 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr 1164 (1493)
+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||
T Consensus 284 ~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr 363 (410)
T 2j0s_A 284 NTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 363 (410)
T ss_dssp SSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1165 ~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
+||+||.|+.|.+++|+++.+...+..+.+.++..+
T Consensus 364 ~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 399 (410)
T 2j0s_A 364 IGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 399 (410)
T ss_dssp HTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCC
T ss_pred cccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999988887653
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-48 Score=480.74 Aligned_cols=380 Identities=30% Similarity=0.476 Sum_probs=298.3
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
.++.+|+++++++.++++|...||..|+|+|.++|| ++..++|++++||||||||++|++|+++++.......
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~-~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~------ 84 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIP-IIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGE------ 84 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCH------
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccc------
Confidence 445679999999999999999999999999999998 5668899999999999999999999999886532110
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
........ ........++++|||+||++||.|+++.+..++...++++..++|+.....+...+.
T Consensus 85 ----------~~~~~~~~-----~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 149 (417)
T 2i4i_A 85 ----------ALRAMKEN-----GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 149 (417)
T ss_dssp ----------HHHHHHHC-----BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHT
T ss_pred ----------hhhccccc-----cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhh
Confidence 00000000 000112234689999999999999999999998888999999999999998888888
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.+++|+|+||++|.+++..+... +.++++|||||||++++++|...+..++......
T Consensus 150 ~~~~I~v~Tp~~l~~~l~~~~~~---~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~-------------------- 206 (417)
T 2i4i_A 150 RGCHLLVATPGRLVDMMERGKIG---LDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP-------------------- 206 (417)
T ss_dssp TCCSEEEECHHHHHHHHHTTSBC---CTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC--------------------
T ss_pred CCCCEEEEChHHHHHHHHcCCcC---hhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC--------------------
Confidence 88999999999999999876543 4578999999999999999999998887643211
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
.....|+++||||+++.+..+...... .+.......
T Consensus 207 ---------~~~~~~~i~~SAT~~~~~~~~~~~~~~------------------------~~~~~~~~~----------- 242 (417)
T 2i4i_A 207 ---------PKGVRHTMMFSATFPKEIQMLARDFLD------------------------EYIFLAVGR----------- 242 (417)
T ss_dssp ---------CBTTBEEEEEESCCCHHHHHHHHHHCS------------------------SCEEEEEC------------
T ss_pred ---------CcCCcEEEEEEEeCCHHHHHHHHHHcC------------------------CCEEEEeCC-----------
Confidence 023579999999998766544321110 000000000
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC--CC
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PG 545 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~ 545 (1493)
.......+......+....+...+..++... .+
T Consensus 243 ---------------------------------------------~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~ 277 (417)
T 2i4i_A 243 ---------------------------------------------VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDS 277 (417)
T ss_dssp ------------------------------------------------CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTC
T ss_pred ---------------------------------------------CCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCC
Confidence 0000011111222333445666777777664 56
Q ss_pred cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCCh
Q psy16310 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625 (1493)
Q Consensus 546 ~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~ 625 (1493)
++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+|++||+||+|.+.
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~ 357 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDI 357 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSH
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 626 EIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 626 ~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
..|+||+||+||.|+.|.|++|+++.+......+..
T Consensus 358 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 393 (417)
T 2i4i_A 358 EEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 393 (417)
T ss_dssp HHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHH
T ss_pred HHHHHhcCccccCCCCceEEEEEccccHHHHHHHHH
Confidence 999999999999999999999999999887777643
No 7
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6e-48 Score=471.91 Aligned_cols=361 Identities=29% Similarity=0.473 Sum_probs=306.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..+|++++|++.++++|...||..|+|+|.++++.+ ..++++++++|||||||++|++|++..+..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------------- 85 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVA-ITGRDILARAKNGTGKTAAFVIPTLEKVKP------------- 85 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HHTCCEEEECCTTSCHHHHHHHHHHHHCCT-------------
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hcCCCEEEECCCCcHHHHHHHHHHHHHHhh-------------
Confidence 457999999999999999999999999999999854 467899999999999999999999987632
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...+.++||++||++|+.|+++.++.++...++.+..++|+.....+...+...
T Consensus 86 --------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 139 (400)
T 1s2m_A 86 --------------------------KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 139 (400)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSC
T ss_pred --------------------------ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCC
Confidence 123457999999999999999999999988899999999999988887777788
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+||++|.+++..+.. .+.++++||+||||++.+.+|...+..++..+ +...|++++|||++..+...
T Consensus 140 ~~Ivv~T~~~l~~~~~~~~~---~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~-----~~~~~~i~lSAT~~~~~~~~ 211 (400)
T 1s2m_A 140 VHILVGTPGRVLDLASRKVA---DLSDCSLFIMDEADKMLSRDFKTIIEQILSFL-----PPTHQSLLFSATFPLTVKEF 211 (400)
T ss_dssp CSEEEECHHHHHHHHHTTCS---CCTTCCEEEEESHHHHSSHHHHHHHHHHHTTS-----CSSCEEEEEESCCCHHHHHH
T ss_pred CCEEEEchHHHHHHHHhCCc---ccccCCEEEEeCchHhhhhchHHHHHHHHHhC-----CcCceEEEEEecCCHHHHHH
Confidence 89999999999998876543 35678999999999999887777777777655 35689999999999776655
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEec
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCN 1085 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~ 1085 (1493)
+..... .+..+..... .....+.+.+..+....+...+..++... .+++||||+
T Consensus 212 ~~~~~~------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~ 266 (400)
T 1s2m_A 212 MVKHLH------------------------KPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCN 266 (400)
T ss_dssp HHHHCS------------------------SCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECS
T ss_pred HHHHcC------------------------CCeEEEeccc-cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEe
Confidence 432211 1111111111 12334555566666677777777776654 578999999
Q ss_pred chhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1086 s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||+
T Consensus 267 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~ 346 (400)
T 1s2m_A 267 STNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRI 346 (400)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1166 GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
||+||.|+.|.|++|+++.+...+.++.+.++..+
T Consensus 347 GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 381 (400)
T 1s2m_A 347 GRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEI 381 (400)
T ss_dssp CBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred chhcCCCCCceEEEEeccchHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999998886543
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.4e-48 Score=491.16 Aligned_cols=365 Identities=27% Similarity=0.419 Sum_probs=292.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHHHhhc-cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHH
Q psy16310 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 852 (1493)
Q Consensus 774 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~-~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 852 (1493)
.|++.++++|..+||..|||+|.++|+.++. .++|++++||||||||++|++|+++.+.....
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~---------------- 90 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---------------- 90 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----------------
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc----------------
Confidence 3999999999999999999999999996664 47899999999999999999999998865321
Q ss_pred HHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhC----CCCcEEEEEEcCCCHHHHHHHhc-CCC
Q psy16310 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK----YTPVKVACVVGGMSTEKQLRILN-KCP 927 (1493)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~----~~~~~v~~~~gg~~~~~~~~~l~-~~~ 927 (1493)
....++++|||+||++||.|+++.++.++. ...+.+..++||.....+...+. .++
T Consensus 91 -------------------~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 151 (579)
T 3sqw_A 91 -------------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRP 151 (579)
T ss_dssp -------------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCC
T ss_pred -------------------cccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCC
Confidence 123456899999999999999999999763 24577888999998888776664 478
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhccc--CCCCCceEEEEecccccchHh
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT--ETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~--~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+|+|+||++|.+++.... ...+..+++|||||||+|++++|...+..++..+... ..+..+|+++||||+++.+..
T Consensus 152 ~IlV~Tp~~l~~~l~~~~--~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~ 229 (579)
T 3sqw_A 152 NIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQK 229 (579)
T ss_dssp SEEEECHHHHHHHHHHHH--HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH
T ss_pred CEEEECHHHHHHHHHhcc--ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHH
Confidence 999999999999987542 1246678999999999999999999999998887542 223478999999999987665
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccc----cccccccceeeEEEeccc-chhh----HHHHHHH--
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE----KIGITKTLTESKILCKHD-EKDS----YLYYFIL-- 1074 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~k~~----~l~~~l~-- 1074 (1493)
.+..... .+..+.+.. .......+.+....+... .... .+...+.
T Consensus 230 ~~~~~l~------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (579)
T 3sqw_A 230 LANNIMN------------------------KKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER 285 (579)
T ss_dssp HTTTTCC------------------------SSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcC------------------------CCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhc
Confidence 4422211 111111110 111223344444444332 2221 2222223
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhc---CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE
Q psy16310 1075 QHPGRTLVFCNSISSVKRLTQLLTML---KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151 (1493)
Q Consensus 1075 ~~~~~~IVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~ 1151 (1493)
..++++||||+|+..|+.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~ 365 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 365 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE
Confidence 23679999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1152 ~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
|++|.+...|+||+|||||+|+.|.|++|+.+.|...++.+.+.....
T Consensus 366 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~ 413 (579)
T 3sqw_A 366 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIV 413 (579)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCC
T ss_pred cCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999888775543
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=6e-48 Score=474.37 Aligned_cols=361 Identities=26% Similarity=0.455 Sum_probs=291.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
...|+++++++.+++.|...||..|+|+|.++|+. +..|++++++||||||||++|++|+++.+..
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------------- 104 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILP-CIKGYDVIAQAQSGTGKTATFAISILQQIEL------------- 104 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-------------
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHH-HhCCCCEEEECCCCCcccHHHHHHHHHHHhh-------------
Confidence 45799999999999999999999999999999985 4578899999999999999999999987632
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc-C
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-K 925 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~ 925 (1493)
...+.++||++||++|+.|+++.++.++...++.+..++||.....+...+. .
T Consensus 105 --------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (414)
T 3eiq_A 105 --------------------------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 158 (414)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTT
T ss_pred --------------------------cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcC
Confidence 1245579999999999999999999999888999999999998887776665 6
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
.++|+|+||++|++++..+.. .+..+++||+||||++.+++|...+..++..+ +...|++++|||++..+..
T Consensus 159 ~~~iiv~T~~~l~~~l~~~~~---~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~-----~~~~~~i~~SAT~~~~~~~ 230 (414)
T 3eiq_A 159 APHIIVGTPGRVFDMLNRRYL---SPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL-----NSNTQVVLLSATMPSDVLE 230 (414)
T ss_dssp CCSEEEECHHHHHHHHHHTSS---CSTTCCEEEECSHHHHHHTTTHHHHHHHHTTS-----CTTCEEEEECSCCCHHHHH
T ss_pred CCCEEEECHHHHHHHHHcCCc---ccccCcEEEEECHHHhhccCcHHHHHHHHHhC-----CCCCeEEEEEEecCHHHHH
Confidence 789999999999999987654 34568999999999999999999999888776 3678999999999977665
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc-hhhHHHHHHHhC-CCcEEEE
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQH-PGRTLVF 1083 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IVF 1083 (1493)
..... +..+..+...........+.+.+..+.... +...+..++... .+++|||
T Consensus 231 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf 286 (414)
T 3eiq_A 231 VTKKF------------------------MRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIF 286 (414)
T ss_dssp HHTTT------------------------CSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEE
T ss_pred HHHHH------------------------cCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEE
Confidence 44221 112222222222233344555555554443 666666666654 5799999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHH
Q psy16310 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163 (1493)
Q Consensus 1084 ~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiq 1163 (1493)
|+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+|
T Consensus 287 ~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Q 366 (414)
T 3eiq_A 287 INTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 366 (414)
T ss_dssp CSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHH
T ss_pred eCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1164 r~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
|+||+||.|+.|.|++|+++.+...+..+.+.++..
T Consensus 367 r~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 402 (414)
T 3eiq_A 367 RIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 402 (414)
T ss_dssp HSCCC-------CEEEEECSTHHHHHHHHHHHTTCC
T ss_pred hcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998887654
No 10
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=9.8e-48 Score=471.54 Aligned_cols=355 Identities=27% Similarity=0.500 Sum_probs=289.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
..+|+++++++.++++|...||..|+|+|.++++ .+..++|+++++|||||||++|++|+++.+..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~-~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------------- 101 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIK-QIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------------- 101 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------------
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHH-HHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-------------
Confidence 4579999999999999999999999999999998 55578999999999999999999999976521
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
...+.++|||+||++|+.|+++.+..++...++.+..++|+.....+...+..+
T Consensus 102 --------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 155 (410)
T 2j0s_A 102 --------------------------QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 155 (410)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHC
T ss_pred --------------------------ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcC
Confidence 123467999999999999999999999988899999999999998888888888
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|.+++...... +.++++|||||||+++++++...+..++..+
T Consensus 156 ~~ivv~Tp~~l~~~l~~~~~~---~~~~~~vViDEah~~~~~~~~~~~~~i~~~~------------------------- 207 (410)
T 2j0s_A 156 QHVVAGTPGRVFDMIRRRSLR---TRAIKMLVLDEADEMLNKGFKEQIYDVYRYL------------------------- 207 (410)
T ss_dssp CSEEEECHHHHHHHHHTTSSC---CTTCCEEEEETHHHHTSTTTHHHHHHHHTTS-------------------------
T ss_pred CCEEEcCHHHHHHHHHhCCcc---HhheeEEEEccHHHHHhhhhHHHHHHHHHhC-------------------------
Confidence 999999999999999876543 4578999999999999999988888877554
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+...|++++|||++..+..+...... .+.........
T Consensus 208 --------~~~~~~i~~SAT~~~~~~~~~~~~~~------------------------~~~~~~~~~~~----------- 244 (410)
T 2j0s_A 208 --------PPATQVVLISATLPHEILEMTNKFMT------------------------DPIRILVKRDE----------- 244 (410)
T ss_dssp --------CTTCEEEEEESCCCHHHHTTGGGTCS------------------------SCEEECCCGGG-----------
T ss_pred --------ccCceEEEEEcCCCHHHHHHHHHHcC------------------------CCEEEEecCcc-----------
Confidence 34579999999998765543321100 00000000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccc-cCchhhHHHHHHhh-CCCcE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFILQ-HPGRT 547 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~-~~~~~ 547 (1493)
............+. ...+...+..++.. ..+++
T Consensus 245 ---------------------------------------------~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~ 279 (410)
T 2j0s_A 245 ---------------------------------------------LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA 279 (410)
T ss_dssp ---------------------------------------------CSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEE
T ss_pred ---------------------------------------------ccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcE
Confidence 00000011111111 12245556665554 35799
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...
T Consensus 280 lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~ 359 (410)
T 2j0s_A 280 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 359 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHH
T ss_pred EEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|+||+||+||.|+.|.|++|+++.+...+..+.
T Consensus 360 ~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~ 392 (410)
T 2j0s_A 360 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 392 (410)
T ss_dssp HHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHH
T ss_pred HHHhcccccCCCCceEEEEEecHHHHHHHHHHH
Confidence 999999999999999999999998877766653
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1e-47 Score=472.07 Aligned_cols=368 Identities=26% Similarity=0.455 Sum_probs=297.6
Q ss_pred CcchhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhhcCC
Q psy16310 759 NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 837 (1493)
Q Consensus 759 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~~~~ 837 (1493)
.++.+..++.+|+++++++.++++|.+.||..|+|+|.++|+.++.+ +++++++||||||||++|++|+++.+..
T Consensus 16 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---- 91 (412)
T 3fht_A 16 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---- 91 (412)
T ss_dssp CTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT----
T ss_pred cCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh----
Confidence 34445566788999999999999999999999999999999966643 4899999999999999999999987632
Q ss_pred CCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCH
Q psy16310 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMST 916 (1493)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~ 916 (1493)
...++++|||+||++|+.|+++.++.++... ++.+....|+...
T Consensus 92 -----------------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (412)
T 3fht_A 92 -----------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 136 (412)
T ss_dssp -----------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCC
T ss_pred -----------------------------------cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcch
Confidence 1344579999999999999999999988764 6788888887654
Q ss_pred HHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEE
Q psy16310 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVF 995 (1493)
Q Consensus 917 ~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~ 995 (1493)
... ....++|+|+||++|.+++.... ...+.++++|||||||++++ .++...+..++..+ +...|++++
T Consensus 137 ~~~---~~~~~~ivv~T~~~l~~~~~~~~--~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~ 206 (412)
T 3fht_A 137 ERG---QKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML-----PRNCQMLLF 206 (412)
T ss_dssp CTT---CCCCCSEEEECHHHHHHHHTTSC--SSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS-----CTTCEEEEE
T ss_pred hhh---hcCCCCEEEECchHHHHHHHhcC--CcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC-----CCCceEEEE
Confidence 322 13457999999999999886522 12456899999999999987 67777777777665 367899999
Q ss_pred ecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHH
Q psy16310 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFIL 1074 (1493)
Q Consensus 996 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~ 1074 (1493)
|||++..+....... +..+..+.+.........+.+.+..+.. ..+...+..++.
T Consensus 207 SAT~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (412)
T 3fht_A 207 SATFEDSVWKFAQKV------------------------VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYG 262 (412)
T ss_dssp ESCCCHHHHHHHHHH------------------------SSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EeecCHHHHHHHHHh------------------------cCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHh
Confidence 999997765544221 2233334444434444555555555544 345555555554
Q ss_pred h-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec
Q psy16310 1075 Q-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153 (1493)
Q Consensus 1075 ~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d 1153 (1493)
. ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||
T Consensus 263 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 263 AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 342 (412)
T ss_dssp HHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESS
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEEC
Confidence 4 467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CChhHHHHHHhccCCCCCCCeEEEEecCCC-HHHHHHHHHhcccc
Q psy16310 1154 VP------RTSEIYIHRSGRTARANNEGLTLVLIESDE-IPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1154 ~p------~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e-~~~~~~~~~~~~~~ 1199 (1493)
+| .+..+|+||+||+||.|+.|.+++|+++.+ ...+..+.+.++..
T Consensus 343 ~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 395 (412)
T 3fht_A 343 LPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKK 395 (412)
T ss_dssp CCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCc
Confidence 99 567899999999999999999999998775 67777777777654
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.5e-47 Score=489.18 Aligned_cols=365 Identities=26% Similarity=0.413 Sum_probs=291.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHHHhhc-cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHH
Q psy16310 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 852 (1493)
Q Consensus 774 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~-~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 852 (1493)
.|++.++++|...||..|||+|.++|+.++. .++|++++||||||||++|++|+++.+.....
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~---------------- 141 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---------------- 141 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----------------
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc----------------
Confidence 3999999999999999999999999997664 47899999999999999999999998865321
Q ss_pred HHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC----CCcEEEEEEcCCCHHHHHHHh-cCCC
Q psy16310 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY----TPVKVACVVGGMSTEKQLRIL-NKCP 927 (1493)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~----~~~~v~~~~gg~~~~~~~~~l-~~~~ 927 (1493)
....++++|||+||++||.|+++.++.+... ..+.+..++||.....+...+ ..++
T Consensus 142 -------------------~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 202 (563)
T 3i5x_A 142 -------------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRP 202 (563)
T ss_dssp -------------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCC
T ss_pred -------------------cccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCC
Confidence 1123568999999999999999999987432 346788899999888777665 4478
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhccc--CCCCCceEEEEecccccchHh
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT--ETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~--~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+|+|+||++|.+++..... ..+..+++|||||||+|++++|...+..++..+... ......|+++||||++..+..
T Consensus 203 ~Iiv~Tp~~l~~~l~~~~~--~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~ 280 (563)
T 3i5x_A 203 NIVIATPGRLIDVLEKYSN--KFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQK 280 (563)
T ss_dssp SEEEECHHHHHHHHHHHHH--HHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH
T ss_pred CEEEECcHHHHHHHHhccc--cccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHH
Confidence 9999999999999875421 236679999999999999999999999998887542 224578999999999987665
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEec--c--ccccccccceeeEEEeccc-chhhHH----HHHHH--
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL--T--EKIGITKTLTESKILCKHD-EKDSYL----YYFIL-- 1074 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~-~k~~~l----~~~l~-- 1074 (1493)
.+..... .+..+.+ . ........+.+....+... .+...+ ...+.
T Consensus 281 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (563)
T 3i5x_A 281 LANNIMN------------------------KKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER 336 (563)
T ss_dssp HTTTTCC------------------------SSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcC------------------------CCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhc
Confidence 4422211 1111111 0 1111223344444444332 222222 22222
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhc---CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE
Q psy16310 1075 QHPGRTLVFCNSISSVKRLTQLLTML---KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151 (1493)
Q Consensus 1075 ~~~~~~IVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~ 1151 (1493)
..++++||||+|+..|+.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 416 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 416 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE
Confidence 33679999999999999999999987 889999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1152 ~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
||+|.+...|+||+|||||+|+.|.|++|+.+.+...++.+.+.....
T Consensus 417 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~ 464 (563)
T 3i5x_A 417 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIV 464 (563)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCC
T ss_pred ECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999888775543
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.7e-47 Score=455.57 Aligned_cols=357 Identities=31% Similarity=0.526 Sum_probs=307.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..+|++++|++.++++|.+.||..|+|+|.++++.++.+++++++++|||||||++|++|++..+..
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------------- 71 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------------- 71 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------------
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------------
Confidence 3569999999999999999999999999999999777655899999999999999999999876521
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
..+.++||++||++|+.|+++.+..+....++.+..++||.....+...+. .
T Consensus 72 ---------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~ 123 (367)
T 1hv8_A 72 ---------------------------NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-N 123 (367)
T ss_dssp ---------------------------SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-T
T ss_pred ---------------------------cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-C
Confidence 235579999999999999999999998888899999999998877766655 5
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+||++|.+.+..+.. .+.++++||+||||++.++++...+..++..+ +...+++++|||++......
T Consensus 124 ~~iiv~T~~~l~~~~~~~~~---~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~-----~~~~~~i~~SAT~~~~~~~~ 195 (367)
T 1hv8_A 124 ANIVVGTPGRILDHINRGTL---NLKNVKYFILDEADEMLNMGFIKDVEKILNAC-----NKDKRILLFSATMPREILNL 195 (367)
T ss_dssp CSEEEECHHHHHHHHHTTCS---CTTSCCEEEEETHHHHHTTTTHHHHHHHHHTS-----CSSCEEEEECSSCCHHHHHH
T ss_pred CCEEEecHHHHHHHHHcCCc---ccccCCEEEEeCchHhhhhchHHHHHHHHHhC-----CCCceEEEEeeccCHHHHHH
Confidence 79999999999999886543 35678999999999999999988888888765 36789999999999766544
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecc
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 1086 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s 1086 (1493)
+.... .....+.. .....+.+.+..+....+...+..++....+++||||++
T Consensus 196 ~~~~~------------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf~~~ 247 (367)
T 1hv8_A 196 AKKYM------------------------GDYSFIKA----KINANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKT 247 (367)
T ss_dssp HHHHC------------------------CSEEEEEC----CSSSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSS
T ss_pred HHHHc------------------------CCCeEEEe----cCCCCceEEEEEeChHHHHHHHHHHHhcCCCcEEEEECC
Confidence 32211 11111111 112345556666777788888888888778899999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHh
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~G 1166 (1493)
+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+..+|+||+|
T Consensus 248 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~G 327 (367)
T 1hv8_A 248 KRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIG 327 (367)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1167 R~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
|+||.|+.|.+++++++.+...+..+.+.++..+
T Consensus 328 R~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 361 (367)
T 1hv8_A 328 RTGRAGKKGKAISIINRREYKKLRYIERAMKLKI 361 (367)
T ss_dssp TTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCC
T ss_pred ccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999988876643
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.2e-49 Score=495.39 Aligned_cols=367 Identities=26% Similarity=0.453 Sum_probs=164.2
Q ss_pred CcchhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhhcCC
Q psy16310 759 NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 837 (1493)
Q Consensus 759 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~~~~ 837 (1493)
.++.+..++.+|.+++|++.++++|+.+||..|||+|.++||.++.+ +++++++||||||||++|++|+++.+..
T Consensus 83 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~---- 158 (479)
T 3fmp_B 83 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---- 158 (479)
T ss_dssp STTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT----
T ss_pred CCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh----
Confidence 34444556778999999999999999999999999999999966643 4899999999999999999999976632
Q ss_pred CCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCH
Q psy16310 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMST 916 (1493)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~ 916 (1493)
...++++|||+||++|+.|+++.++.++... ++.+....|+...
T Consensus 159 -----------------------------------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (479)
T 3fmp_B 159 -----------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203 (479)
T ss_dssp -----------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCC
T ss_pred -----------------------------------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccc
Confidence 1334579999999999999999999988764 5778888877653
Q ss_pred HHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEE
Q psy16310 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVF 995 (1493)
Q Consensus 917 ~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~ 995 (1493)
... ....++|+|+||++|++++.... ...+.++++|||||||++++ .++...+..++..+ +..+|+++|
T Consensus 204 ~~~---~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~-----~~~~~~i~~ 273 (479)
T 3fmp_B 204 ERG---QKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML-----PRNCQMLLF 273 (479)
T ss_dssp CTT---CCCCCSEEEECHHHHHHHHTTSC--CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS-----CTTSEEEEE
T ss_pred ccc---ccCCCCEEEECchHHHHHHHhcC--CcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC-----CccceEEEE
Confidence 322 13456899999999999986532 23457899999999999987 56666666666554 467899999
Q ss_pred ecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHH
Q psy16310 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFIL 1074 (1493)
Q Consensus 996 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~ 1074 (1493)
|||++..+....... +..+..+.+.........+.+.+..+.. ..+...+..++.
T Consensus 274 SAT~~~~~~~~~~~~------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (479)
T 3fmp_B 274 SATFEDSVWKFAQKV------------------------VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYG 329 (479)
T ss_dssp ESCCCHHHHHHHHHH------------------------SSSEEEEEEC-------------------------------
T ss_pred eCCCCHHHHHHHHHH------------------------cCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHh
Confidence 999998765544221 1223333333333333444444444443 334444444443
Q ss_pred h-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec
Q psy16310 1075 Q-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153 (1493)
Q Consensus 1075 ~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d 1153 (1493)
. ..+++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||
T Consensus 330 ~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d 409 (479)
T 3fmp_B 330 AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 409 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEec
Confidence 3 357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CChhHHHHHHhccCCCCCCCeEEEEecCCC-HHHHHHHHHhccc
Q psy16310 1154 VP------RTSEIYIHRSGRTARANNEGLTLVLIESDE-IPLYIKMFNSLEK 1198 (1493)
Q Consensus 1154 ~p------~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e-~~~~~~~~~~~~~ 1198 (1493)
+| .+...|+||+|||||+|+.|.|++|+++.+ ...+..+.+.++.
T Consensus 410 ~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~ 461 (479)
T 3fmp_B 410 LPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 461 (479)
T ss_dssp ----------------------------------------------------
T ss_pred CCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCC
Confidence 99 467899999999999999999999998775 5566666555544
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.2e-46 Score=458.86 Aligned_cols=359 Identities=26% Similarity=0.479 Sum_probs=297.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
..|+++++++.++++|.++||..|+|+|.++++. +..++++++++|||+|||++|++|++..+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------------- 72 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ-AILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 72 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHH-HTTTCCEEEECSSCSSHHHHHHHHHHHHCCC--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEECCCCCcHHHHHHHHHHHhhcc--------------
Confidence 4699999999999999999999999999999985 4567899999999999999999999976522
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhc-C
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILN-K 925 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~-~ 925 (1493)
...+.++||++||++|+.|+++.+..+.... ++++..++||.....+...+. .
T Consensus 73 -------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 127 (391)
T 1xti_A 73 -------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 127 (391)
T ss_dssp -------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHS
T ss_pred -------------------------cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcC
Confidence 1234579999999999999999999998776 799999999998877766554 3
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.++|+|+||++|..++..... .+.++++||+||||++.++ ++...+..++..+ +...|++++|||++..+.
T Consensus 128 ~~~iiv~T~~~l~~~~~~~~~---~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~SAT~~~~~~ 199 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNKSL---NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT-----PHEKQVMMFSATLSKEIR 199 (391)
T ss_dssp CCSEEEECHHHHHHHHHTTSS---CCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTS-----CSSSEEEEEESSCCSTHH
T ss_pred CCCEEEECHHHHHHHHHcCCc---cccccCEEEEeCHHHHhhccchHHHHHHHHhhC-----CCCceEEEEEeeCCHHHH
Confidence 579999999999998876553 3568899999999999874 6666677676654 357899999999998765
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccc-ccccccceeeEEEecccchhhHHHHHHHhC-CCcEEE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK-IGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLV 1082 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IV 1082 (1493)
..+.... ..+..+..... ......+.+.+..+....+...+..++... .+++||
T Consensus 200 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lv 255 (391)
T 1xti_A 200 PVCRKFM------------------------QDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI 255 (391)
T ss_dssp HHHHHHC------------------------SSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHc------------------------CCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEE
Confidence 5443221 12222222211 122344556666777778888888777765 578999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHH
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yi 1162 (1493)
||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+|++|.+...|+
T Consensus 256 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~ 335 (391)
T 1xti_A 256 FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 335 (391)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHH
T ss_pred EeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEecCCCH-HHHHHHHHhccc
Q psy16310 1163 HRSGRTARANNEGLTLVLIESDEI-PLYIKMFNSLEK 1198 (1493)
Q Consensus 1163 qr~GR~gR~g~~G~~i~l~~~~e~-~~~~~~~~~~~~ 1198 (1493)
||+||+||.|+.|.+++|+++.+. ..+..+.+.++.
T Consensus 336 Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (391)
T 1xti_A 336 HRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 372 (391)
T ss_dssp HHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTC
T ss_pred HhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcC
Confidence 999999999999999999988744 455666666543
No 16
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.9e-46 Score=456.26 Aligned_cols=365 Identities=23% Similarity=0.422 Sum_probs=289.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
+.+|++++|++.++++|...||..|+|+|.++++.++.+ +++++++||||||||++|++|++..+..
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------------ 71 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------------ 71 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------------
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------------
Confidence 467999999999999999999999999999999966543 2899999999999999999999987632
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
...+.++|||+||++|+.|+++.++.++...++.+..++|+...... ..
T Consensus 72 ---------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 120 (395)
T 3pey_A 72 ---------------------------EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QI 120 (395)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CB
T ss_pred ---------------------------CCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cC
Confidence 12455799999999999999999999998888998888887543221 23
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.++|+|+||++|.+++..+.. .+.++++||+||||++.+ .++...+..+...+ +...|++++|||+++.+.
T Consensus 121 ~~~iiv~T~~~l~~~~~~~~~---~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~SAT~~~~~~ 192 (395)
T 3pey_A 121 NAQVIVGTPGTVLDLMRRKLM---QLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL-----PKDTQLVLFSATFADAVR 192 (395)
T ss_dssp CCSEEEECHHHHHHHHHTTCB---CCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTS-----CTTCEEEEEESCCCHHHH
T ss_pred CCCEEEEcHHHHHHHHHcCCc---ccccCCEEEEEChhhhcCccccHHHHHHHHHhC-----CCCcEEEEEEecCCHHHH
Confidence 679999999999999876543 366789999999999988 56666676666655 367899999999997765
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHHhC-CCcEEE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQH-PGRTLV 1082 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~-~~~~IV 1082 (1493)
....... ..+..+...........+.+.+..+.. ..+...+..++... .+++||
T Consensus 193 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lv 248 (395)
T 3pey_A 193 QYAKKIV------------------------PNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSII 248 (395)
T ss_dssp HHHHHHS------------------------CSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEE
T ss_pred HHHHHhC------------------------CCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEE
Confidence 5442211 122222222222233444444444433 34444454444433 579999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC------
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR------ 1156 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~------ 1156 (1493)
||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.
T Consensus 249 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~ 328 (395)
T 3pey_A 249 FVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQA 328 (395)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSB
T ss_pred EeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHHHhccCCCCCCCeEEEEecCCCH-HHHHHHHHhccccCCCCCCCC
Q psy16310 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEI-PLYIKMFNSLEKKVDLPDFPI 1207 (1493)
Q Consensus 1157 s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~-~~~~~~~~~~~~~~~~~~~p~ 1207 (1493)
+..+|+||+||+||.|+.|.+++|+.+.+. ..+..+.+.++ ...+..+|.
T Consensus 329 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~ 379 (395)
T 3pey_A 329 DPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG-DIEMTRVPT 379 (395)
T ss_dssp CHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT-SCCCEECCS
T ss_pred CHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC-CceeecCCh
Confidence 999999999999999999999999987654 44555555544 233334443
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.9e-46 Score=456.96 Aligned_cols=353 Identities=29% Similarity=0.472 Sum_probs=286.5
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
..+|++++|++.++++|.++||..|+|+|.++++ .+..++++++++|||||||++|++|++.++..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------------- 85 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIP-VAITGRDILARAKNGTGKTAAFVIPTLEKVKP------------- 85 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-------------
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-------------
Confidence 4579999999999999999999999999999998 55577899999999999999999999876632
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
...+.++||++||++|+.|+++.+..++...++.+..++|+.....+...+...
T Consensus 86 --------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 139 (400)
T 1s2m_A 86 --------------------------KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 139 (400)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSC
T ss_pred --------------------------ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCC
Confidence 123457999999999999999999999988899999999999988888888888
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|.+++...... +.++++|||||||++++.++...+..++..+
T Consensus 140 ~~Ivv~T~~~l~~~~~~~~~~---~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~------------------------- 191 (400)
T 1s2m_A 140 VHILVGTPGRVLDLASRKVAD---LSDCSLFIMDEADKMLSRDFKTIIEQILSFL------------------------- 191 (400)
T ss_dssp CSEEEECHHHHHHHHHTTCSC---CTTCCEEEEESHHHHSSHHHHHHHHHHHTTS-------------------------
T ss_pred CCEEEEchHHHHHHHHhCCcc---cccCCEEEEeCchHhhhhchHHHHHHHHHhC-------------------------
Confidence 999999999999988765443 5578999999999998877777776666443
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+...|++++|||++..+...+...... +........
T Consensus 192 --------~~~~~~i~lSAT~~~~~~~~~~~~~~~------------------------~~~~~~~~~------------ 227 (400)
T 1s2m_A 192 --------PPTHQSLLFSATFPLTVKEFMVKHLHK------------------------PYEINLMEE------------ 227 (400)
T ss_dssp --------CSSCEEEEEESCCCHHHHHHHHHHCSS------------------------CEEESCCSS------------
T ss_pred --------CcCceEEEEEecCCHHHHHHHHHHcCC------------------------CeEEEeccc------------
Confidence 345799999999987665443211100 000000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcEE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTL 548 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~I 548 (1493)
.....+......+....+...+..++... .+++|
T Consensus 228 ---------------------------------------------~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~l 262 (400)
T 1s2m_A 228 ---------------------------------------------LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAI 262 (400)
T ss_dssp ---------------------------------------------CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEE
T ss_pred ---------------------------------------------cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEE
Confidence 00000111112222334555566666554 47999
Q ss_pred EEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHH
Q psy16310 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628 (1493)
Q Consensus 549 IF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~y 628 (1493)
|||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.++..|
T Consensus 263 Vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~ 342 (400)
T 1s2m_A 263 IFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETY 342 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHH
T ss_pred EEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 629 IHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 629 iQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
+||+||+||.|+.|.|++|+++.|...+..+
T Consensus 343 ~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i 373 (400)
T 1s2m_A 343 LHRIGRSGRFGHLGLAINLINWNDRFNLYKI 373 (400)
T ss_dssp HHHHCBSSCTTCCEEEEEEECGGGHHHHHHH
T ss_pred HHhcchhcCCCCCceEEEEeccchHHHHHHH
Confidence 9999999999999999999999887765555
No 18
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.6e-46 Score=477.43 Aligned_cols=364 Identities=27% Similarity=0.440 Sum_probs=279.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhc-cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 158 IPETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 158 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~-~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
|++.++++|..+||..|+|+|.++|+.++. .++|+|++||||||||++|++|+++.+.....
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~----------------- 90 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF----------------- 90 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----------------
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----------------
Confidence 999999999999999999999999985553 47899999999999999999999998865321
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC----CCCeEEEEEEcCCCHHHHHHHhc-CCCC
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK----YTPVKVACVVGGMSTEKQLRILN-KCPH 311 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~----~~~i~v~~~~G~~~~~~~~~~l~-~~~~ 311 (1493)
....++++|||+||++||.|+++.+..+.. ...+.+..++|+.....++..+. .+++
T Consensus 91 ------------------~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~ 152 (579)
T 3sqw_A 91 ------------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPN 152 (579)
T ss_dssp ------------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCS
T ss_pred ------------------cccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCC
Confidence 112356899999999999999999988752 23577888999998888777664 4789
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||++|.+++.... ...+..+++|||||||+|++++|.+.+..++..+.....
T Consensus 153 IlV~Tp~~l~~~l~~~~--~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~---------------------- 208 (579)
T 3sqw_A 153 IVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS---------------------- 208 (579)
T ss_dssp EEEECHHHHHHHHHHHH--HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS----------------------
T ss_pred EEEECHHHHHHHHHhcc--ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhc----------------------
Confidence 99999999999887531 123567899999999999999999999999887754311
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
.....+|+++||||+++.+..++........ ...+.......
T Consensus 209 ----~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~------------------------~~~~~~~~~~~---------- 250 (579)
T 3sqw_A 209 ----KSADNIKTLLFSATLDDKVQKLANNIMNKKE------------------------CLFLDTVDKNE---------- 250 (579)
T ss_dssp ----SCTTCCEEEEEESSCCTHHHHHTTTTCCSSE------------------------EEEEESSCSSS----------
T ss_pred ----ccccCceEEEEeccCChHHHHHHHHHcCCCc------------------------eEEEeecCccc----------
Confidence 1134579999999999876654422111000 00000000000
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccccc-C----chhhHHHHHHh--hCC
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-D----EKDSYLYYFIL--QHP 544 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~k~~~l~~~l~--~~~ 544 (1493)
+ .....+......+.. . .....+...+. ..+
T Consensus 251 ---------------------------------~---------~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (579)
T 3sqw_A 251 ---------------------------------P---------EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSN 288 (579)
T ss_dssp ---------------------------------C---------SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTC
T ss_pred ---------------------------------c---------ccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCC
Confidence 0 000000000000000 0 01122222233 235
Q ss_pred CcEEEEecchhhHHHHHHHHHhc---CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTML---KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~---~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~ 621 (1493)
.++||||+|+..|+.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGV 368 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCC
Confidence 79999999999999999999887 889999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 622 P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|.++..|+||+|||||+|+.|.|++|+++.|...+..+.
T Consensus 369 p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 369 PSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHH
T ss_pred CCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHH
Confidence 999999999999999999999999999998877776664
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.6e-46 Score=459.81 Aligned_cols=356 Identities=26% Similarity=0.448 Sum_probs=274.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
..+|.++++++.+.+.|.+.||..|+++|.++++ .+..++|++++||||||||++|++|+++.+..
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~-~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------------- 104 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAIL-PCIKGYDVIAQAQSGTGKTATFAISILQQIEL------------- 104 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-------------
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhH-HHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-------------
Confidence 4578899999999999999999999999999998 55578999999999999999999999977632
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc-C
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-K 308 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~-~ 308 (1493)
...+.++||++||++|+.|+++.+..++...++.+..++|+.....+...+. .
T Consensus 105 --------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (414)
T 3eiq_A 105 --------------------------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 158 (414)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTT
T ss_pred --------------------------cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcC
Confidence 1234679999999999999999999998888899999999998888777665 6
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+++|+|+||++|.+++...... +.++++|||||||+++++++...+..++..+
T Consensus 159 ~~~iiv~T~~~l~~~l~~~~~~---~~~~~~vViDEah~~~~~~~~~~~~~~~~~~------------------------ 211 (414)
T 3eiq_A 159 APHIIVGTPGRVFDMLNRRYLS---PKYIKMFVLDEADEMLSRGFKDQIYDIFQKL------------------------ 211 (414)
T ss_dssp CCSEEEECHHHHHHHHHHTSSC---STTCCEEEECSHHHHHHTTTHHHHHHHHTTS------------------------
T ss_pred CCCEEEECHHHHHHHHHcCCcc---cccCcEEEEECHHHhhccCcHHHHHHHHHhC------------------------
Confidence 7899999999999999876544 4478999999999999999998888887655
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
....|+++||||++..+.......... +........
T Consensus 212 ---------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~~~----------- 247 (414)
T 3eiq_A 212 ---------NSNTQVVLLSATMPSDVLEVTKKFMRD------------------------PIRILVKKE----------- 247 (414)
T ss_dssp ---------CTTCEEEEECSCCCHHHHHHHTTTCSS------------------------CEEECCCCC-----------
T ss_pred ---------CCCCeEEEEEEecCHHHHHHHHHHcCC------------------------CEEEEecCC-----------
Confidence 345799999999987665443211100 000000000
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccc-cccCchhhHHHHHHhhC-CCc
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKIL-CKHDEKDSYLYYFILQH-PGR 546 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~l~~~l~~~-~~~ 546 (1493)
......+...... .....+...+..++... .++
T Consensus 248 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 282 (414)
T 3eiq_A 248 ---------------------------------------------ELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQ 282 (414)
T ss_dssp ---------------------------------------------CCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSS
T ss_pred ---------------------------------------------ccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCc
Confidence 0000000011111 12233556666666654 479
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChH
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~ 626 (1493)
+||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..
T Consensus 283 ~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~ 362 (414)
T 3eiq_A 283 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRE 362 (414)
T ss_dssp CEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTH
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
.|+||+||+||.|+.|.|++|+++.+...+..+..
T Consensus 363 ~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 397 (414)
T 3eiq_A 363 NYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 397 (414)
T ss_dssp HHHHHSCCC-------CEEEEECSTHHHHHHHHHH
T ss_pred HhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHH
Confidence 99999999999999999999999988777666543
No 20
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.5e-46 Score=475.61 Aligned_cols=365 Identities=27% Similarity=0.445 Sum_probs=278.9
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhc-cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHH
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 235 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~-~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 235 (1493)
.|++.++++|...||..|+|+|.++|+.++. .++|+|++||||||||++|++|+++++.....
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~---------------- 141 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---------------- 141 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----------------
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc----------------
Confidence 3999999999999999999999999996554 47899999999999999999999998865321
Q ss_pred HHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC----CCCeEEEEEEcCCCHHHHHHHh-cCCC
Q psy16310 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK----YTPVKVACVVGGMSTEKQLRIL-NKCP 310 (1493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~----~~~i~v~~~~G~~~~~~~~~~l-~~~~ 310 (1493)
....++++|||+||++||.|+++.+..+.. ...+.+..++|+.....++..+ ..++
T Consensus 142 -------------------~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 202 (563)
T 3i5x_A 142 -------------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRP 202 (563)
T ss_dssp -------------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCC
T ss_pred -------------------cccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCC
Confidence 112346799999999999999999988643 2346788899999888877666 4478
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||++|.+++.+.. ...+.++++|||||||+|++++|.+.+..++..+.....
T Consensus 203 ~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~--------------------- 259 (563)
T 3i5x_A 203 NIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS--------------------- 259 (563)
T ss_dssp SEEEECHHHHHHHHHHHH--HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS---------------------
T ss_pred CEEEECcHHHHHHHHhcc--ccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccc---------------------
Confidence 999999999999887542 123567999999999999999999999999887754311
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
.....+|+++||||+++.+..+............. .......
T Consensus 260 -----~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~----------------------~~~~~~~----------- 301 (563)
T 3i5x_A 260 -----KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFL----------------------DTVDKNE----------- 301 (563)
T ss_dssp -----SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEE----------------------ESSCSSS-----------
T ss_pred -----cCccCceEEEEEccCCHHHHHHHHHhcCCCceEEE----------------------eccCCCC-----------
Confidence 11346799999999998766544321110000000 0000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccccc-Cc----hhhHHHHHHh--hC
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DE----KDSYLYYFIL--QH 543 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----k~~~l~~~l~--~~ 543 (1493)
+ .....+......+.. .. ....+...+. ..
T Consensus 302 ----------------------------------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (563)
T 3i5x_A 302 ----------------------------------P---------EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDS 338 (563)
T ss_dssp ----------------------------------C---------SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTT
T ss_pred ----------------------------------c---------cccccCceEEEECchhHhhHHHHHHHHHHHHhhcCC
Confidence 0 000000000000000 00 1112222222 23
Q ss_pred CCcEEEEecchhhHHHHHHHHHhc---CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTML---KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~---~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd 620 (1493)
.+++||||+|+..|+.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIG 418 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEES
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEEC
Confidence 579999999999999999999887 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 621 ~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
+|.++..|+||+|||||+|+.|.|++|+++.|...+..+.
T Consensus 419 ~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 419 VPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp CCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHH
T ss_pred CCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHH
Confidence 9999999999999999999999999999999887777664
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.5e-47 Score=465.61 Aligned_cols=360 Identities=26% Similarity=0.429 Sum_probs=168.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
...|+++++++.++++|...||..|+|+|.++++. +..++++++++|||+|||++|++|+++.+..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------------- 85 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP-IIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------- 85 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH-HHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-------------
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHhhc-------------
Confidence 35699999999999999999999999999999985 4467899999999999999999999987632
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...++++||++||++|+.|+++.+..++...++++..++||.....+...+. .
T Consensus 86 --------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~ 138 (394)
T 1fuu_A 86 --------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-D 138 (394)
T ss_dssp --------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-H
T ss_pred --------------------------cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-C
Confidence 1245579999999999999999999999888999999999998877665554 5
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+||++|.+.+..+.. .+.++++||+||||++.++++...+..++..+ +...|++++|||+++.+...
T Consensus 139 ~~i~v~T~~~l~~~~~~~~~---~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~-----~~~~~~i~~SAT~~~~~~~~ 210 (394)
T 1fuu_A 139 AQIVVGTPGRVFDNIQRRRF---RTDKIKMFILDEADEMLSSGFKEQIYQIFTLL-----PPTTQVVLLSATMPNDVLEV 210 (394)
T ss_dssp CSEEEECHHHHHHHHHTTSS---CCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS-----CTTCEEEEECSSCCHHHHHH
T ss_pred CCEEEECHHHHHHHHHhCCc---chhhCcEEEEEChHHhhCCCcHHHHHHHHHhC-----CCCceEEEEEEecCHHHHHH
Confidence 79999999999999886543 35678999999999999999999999888876 36789999999999776554
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc-hhhHHHHHHHh-CCCcEEEEe
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQ-HPGRTLVFC 1084 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~-~~~~~IVF~ 1084 (1493)
...... .+..+...........+.+.+..+.... +...+..++.. ..+++||||
T Consensus 211 ~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~ 266 (394)
T 1fuu_A 211 TTKFMR------------------------NPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFC 266 (394)
T ss_dssp HHHHCC------------------------SCEEEEECC-----------------------------------------
T ss_pred HHHhcC------------------------CCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEE
Confidence 432211 1111111111111112222222222221 33334444333 357899999
Q ss_pred cchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHH
Q psy16310 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr 1164 (1493)
+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||
T Consensus 267 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr 346 (394)
T 1fuu_A 267 NTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHR 346 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1165 ~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
+||+||.|+.|.|++|+++.+...+..+.+.++..
T Consensus 347 ~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 381 (394)
T 1fuu_A 347 IGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 381 (394)
T ss_dssp -----------------------------------
T ss_pred cCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCc
Confidence 99999999999999999999988888777766543
No 22
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.2e-47 Score=479.75 Aligned_cols=359 Identities=26% Similarity=0.455 Sum_probs=157.0
Q ss_pred cccccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcc-CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCC
Q psy16310 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 222 (1493)
Q Consensus 144 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~ 222 (1493)
+.+.....+|.+++|++.++++|..+||..|+|+|.+++|.++.+ ++|+|++||||||||++|++|+++++..
T Consensus 85 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------ 158 (479)
T 3fmp_B 85 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ 158 (479)
T ss_dssp TSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------
T ss_pred CCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------
Confidence 334455678999999999999999999999999999999965543 4899999999999999999999866522
Q ss_pred CccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHH
Q psy16310 223 EEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEK 301 (1493)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~ 301 (1493)
...++++|||+||++||.|+++.+..+.... ++.+....|+.....
T Consensus 159 ---------------------------------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (479)
T 3fmp_B 159 ---------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 205 (479)
T ss_dssp ---------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT
T ss_pred ---------------------------------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc
Confidence 2334579999999999999999999987753 577777777754332
Q ss_pred HHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccC
Q psy16310 302 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESG 380 (1493)
Q Consensus 302 ~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~ 380 (1493)
. ....++|+|+||++|++++.+.. ...+.++++|||||||++++ .++...+..++..+
T Consensus 206 ~---~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~---------------- 264 (479)
T 3fmp_B 206 G---QKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML---------------- 264 (479)
T ss_dssp T---CCCCCSEEEECHHHHHHHHTTSC--CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS----------------
T ss_pred c---ccCCCCEEEECchHHHHHHHhcC--CcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC----------------
Confidence 2 13356899999999999986532 22356899999999999987 46666666555433
Q ss_pred CcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcc
Q psy16310 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460 (1493)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1493)
+..+|+++||||++..+..+...... .+..+........
T Consensus 265 -----------------~~~~~~i~~SAT~~~~~~~~~~~~~~------------------------~~~~i~~~~~~~~ 303 (479)
T 3fmp_B 265 -----------------PRNCQMLLFSATFEDSVWKFAQKVVP------------------------DPNVIKLKREEET 303 (479)
T ss_dssp -----------------CTTSEEEEEESCCCHHHHHHHHHHSS------------------------SEEEEEEC-----
T ss_pred -----------------CccceEEEEeCCCCHHHHHHHHHHcC------------------------CCeEEeccccccC
Confidence 34579999999999876554431110 0100000000000
Q ss_pred ccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccc-cCchhhHHHHH
Q psy16310 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYF 539 (1493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~ 539 (1493)
. .........+. ...+...+..+
T Consensus 304 ~--------------------------------------------------------~~~~~~~~~~~~~~~~~~~l~~~ 327 (479)
T 3fmp_B 304 L--------------------------------------------------------DTIKQYYVLCSSRDEKFQALCNL 327 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c--------------------------------------------------------CCceEEEEEeCCHHHHHHHHHHH
Confidence 0 00000000111 11223333333
Q ss_pred Hhh-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 540 ILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 540 l~~-~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
+.. ..+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 328 ~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 332 2468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC------CChHHHHHHHhccccCCCCCeEEEEecCCc-chhhhhh
Q psy16310 619 YHVP------RTSEIYIHRSGRTARANNEGLTVVLIESDE-IPLKTKF 659 (1493)
Q Consensus 619 yd~P------~s~~~yiQR~GRagR~g~~G~~i~l~~~~e-~~~~~~l 659 (1493)
||+| .+...|+||+|||||+|+.|.|++|+++.+ ...+..+
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i 455 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRI 455 (479)
T ss_dssp ------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHH
Confidence 9999 467899999999999999999999998765 4444444
No 23
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4e-45 Score=441.45 Aligned_cols=350 Identities=32% Similarity=0.537 Sum_probs=288.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|+++++++.++++|.+.||..|+|+|.++++.++.+++++++++|||||||++|++|++..+..
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------------- 71 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------------- 71 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS--------------
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc--------------
Confidence 469999999999999999999999999999999666555899999999999999999999876521
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
..+.++||++||++|+.|+++.+..+....++.+..++|+.....+...+. .+
T Consensus 72 --------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~ 124 (367)
T 1hv8_A 72 --------------------------NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NA 124 (367)
T ss_dssp --------------------------SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TC
T ss_pred --------------------------cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CC
Confidence 234679999999999999999999998888899999999998877766655 57
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||++|.+.+..+... +.++++||+||||++.++++...+..++..+
T Consensus 125 ~iiv~T~~~l~~~~~~~~~~---~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~-------------------------- 175 (367)
T 1hv8_A 125 NIVVGTPGRILDHINRGTLN---LKNVKYFILDEADEMLNMGFIKDVEKILNAC-------------------------- 175 (367)
T ss_dssp SEEEECHHHHHHHHHTTCSC---TTSCCEEEEETHHHHHTTTTHHHHHHHHHTS--------------------------
T ss_pred CEEEecHHHHHHHHHcCCcc---cccCCEEEEeCchHhhhhchHHHHHHHHHhC--------------------------
Confidence 99999999999998865443 4578999999999999999888888877654
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
....+++++|||+++.+...+...... ......
T Consensus 176 -------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~---------------- 208 (367)
T 1hv8_A 176 -------NKDKRILLFSATMPREILNLAKKYMGD------------------------YSFIKA---------------- 208 (367)
T ss_dssp -------CSSCEEEEECSSCCHHHHHHHHHHCCS------------------------EEEEEC----------------
T ss_pred -------CCCceEEEEeeccCHHHHHHHHHHcCC------------------------CeEEEe----------------
Confidence 344789999999987654433210000 000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF 550 (1493)
.....+......+....+...+..++....+++|||
T Consensus 209 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf 244 (367)
T 1hv8_A 209 --------------------------------------------KINANIEQSYVEVNENERFEALCRLLKNKEFYGLVF 244 (367)
T ss_dssp --------------------------------------------CSSSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEE
T ss_pred --------------------------------------------cCCCCceEEEEEeChHHHHHHHHHHHhcCCCcEEEE
Confidence 000011111222333456667777777777899999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 551 ~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
|+++..++.++..|...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.++..|+|
T Consensus 245 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q 324 (367)
T 1hv8_A 245 CKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMH 324 (367)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHH
T ss_pred ECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 631 RSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 631 R~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
|+||+||.|+.|.|++++++.|...+..+..
T Consensus 325 ~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 355 (367)
T 1hv8_A 325 RIGRTGRAGKKGKAISIINRREYKKLRYIER 355 (367)
T ss_dssp HSTTTCCSSSCCEEEEEECTTSHHHHHHHHH
T ss_pred cccccccCCCccEEEEEEcHHHHHHHHHHHH
Confidence 9999999999999999999988877766643
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.8e-45 Score=452.05 Aligned_cols=357 Identities=27% Similarity=0.456 Sum_probs=274.2
Q ss_pred cccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcc-CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCc
Q psy16310 146 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 224 (1493)
Q Consensus 146 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~ 224 (1493)
+.....+|+++++++.++++|.+.||..|+|+|.++++.++.+ +++++++||||||||++|++|+++.+..
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------- 91 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-------- 91 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT--------
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh--------
Confidence 3455678999999999999999999999999999999965543 4899999999999999999999977632
Q ss_pred cCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHH
Q psy16310 225 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQL 303 (1493)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~ 303 (1493)
...++++|||+||++||.|+++.+..+.... ++.+....|+......
T Consensus 92 -------------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 139 (412)
T 3fht_A 92 -------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG- 139 (412)
T ss_dssp -------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT-
T ss_pred -------------------------------cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh-
Confidence 1344579999999999999999999988764 6888888887654322
Q ss_pred HHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccCCc
Q psy16310 304 RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESGHF 382 (1493)
Q Consensus 304 ~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~ 382 (1493)
....++|+|+||++|.+++.... ...+.++++|||||||++++ .++...+..++..+
T Consensus 140 --~~~~~~ivv~T~~~l~~~~~~~~--~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~------------------ 197 (412)
T 3fht_A 140 --QKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML------------------ 197 (412)
T ss_dssp --CCCCCSEEEECHHHHHHHHTTSC--SSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS------------------
T ss_pred --hcCCCCEEEECchHHHHHHHhcC--CcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC------------------
Confidence 13457999999999999886422 12345899999999999987 56766666666544
Q ss_pred chhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcccc
Q psy16310 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462 (1493)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1493)
+...|++++|||+++.+..+....... +.........
T Consensus 198 ---------------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~~~~---- 234 (412)
T 3fht_A 198 ---------------PRNCQMLLFSATFEDSVWKFAQKVVPD------------------------PNVIKLKREE---- 234 (412)
T ss_dssp ---------------CTTCEEEEEESCCCHHHHHHHHHHSSS------------------------CEEECCCGGG----
T ss_pred ---------------CCCceEEEEEeecCHHHHHHHHHhcCC------------------------CeEEeecccc----
Confidence 345799999999998765544211100 0000000000
Q ss_pred ccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHh
Q psy16310 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFIL 541 (1493)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~ 541 (1493)
.....+......+ ....+...+..++.
T Consensus 235 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (412)
T 3fht_A 235 ----------------------------------------------------ETLDTIKQYYVLCSSRDEKFQALCNLYG 262 (412)
T ss_dssp ----------------------------------------------------SSCTTEEEEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------ccccCceEEEEEcCChHHHHHHHHHHHh
Confidence 0000001111111 12234455555554
Q ss_pred h-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec
Q psy16310 542 Q-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 542 ~-~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd 620 (1493)
. ..+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||
T Consensus 263 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 263 AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 342 (412)
T ss_dssp HHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESS
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEEC
Confidence 4 357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CChHHHHHHHhccccCCCCCeEEEEecCCc-chhhhhh
Q psy16310 621 VP------RTSEIYIHRSGRTARANNEGLTVVLIESDE-IPLKTKF 659 (1493)
Q Consensus 621 ~P------~s~~~yiQR~GRagR~g~~G~~i~l~~~~e-~~~~~~l 659 (1493)
+| .+...|+||+||+||.|..|.|++|+++.+ ...+..+
T Consensus 343 ~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i 388 (412)
T 3fht_A 343 LPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRI 388 (412)
T ss_dssp CCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHH
T ss_pred CCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHH
Confidence 99 577999999999999999999999998764 3444433
No 25
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.4e-45 Score=445.18 Aligned_cols=347 Identities=27% Similarity=0.497 Sum_probs=276.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|+++++++.++++|..+||..|+|+|.++++ .+..++|+++++|||+|||++|++|++..+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------------- 72 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP-QAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 72 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHH-HHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc--------------
Confidence 469999999999999999999999999999998 55578999999999999999999999876521
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcC-
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNK- 308 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~- 308 (1493)
...+.++||++||++|+.|+.+.+..+.... ++++..++|+.....+...+..
T Consensus 73 -------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 127 (391)
T 1xti_A 73 -------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 127 (391)
T ss_dssp -------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHS
T ss_pred -------------------------cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcC
Confidence 1234579999999999999999999988765 7999999999988777666654
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhc-CChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~-~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.++|+|+||++|.+++...... +.++++|||||||+++++ ++...+..++...
T Consensus 128 ~~~iiv~T~~~l~~~~~~~~~~---~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~----------------------- 181 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNKSLN---LKHIKHFILDECDKMLEQLDMRRDVQEIFRMT----------------------- 181 (391)
T ss_dssp CCSEEEECHHHHHHHHHTTSSC---CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTS-----------------------
T ss_pred CCCEEEECHHHHHHHHHcCCcc---ccccCEEEEeCHHHHhhccchHHHHHHHHhhC-----------------------
Confidence 4799999999999988865543 558899999999999874 5555666665433
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
+...|++++|||+++.+...+...... +.......
T Consensus 182 ----------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~~----------- 216 (391)
T 1xti_A 182 ----------PHEKQVMMFSATLSKEIRPVCRKFMQD------------------------PMEIFVDD----------- 216 (391)
T ss_dssp ----------CSSSEEEEEESSCCSTHHHHHHHHCSS------------------------CEEEECCC-----------
T ss_pred ----------CCCceEEEEEeeCCHHHHHHHHHHcCC------------------------CeEEEecC-----------
Confidence 345799999999987655443211100 00000000
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCc
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGR 546 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~ 546 (1493)
.. ......+......+....+...+..++... .++
T Consensus 217 ------~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 252 (391)
T 1xti_A 217 ------ET--------------------------------------KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQ 252 (391)
T ss_dssp ------CC--------------------------------------CCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSE
T ss_pred ------cc--------------------------------------ccCcccceEEEEEcCchhHHHHHHHHHHhcCCCc
Confidence 00 000001111122223344556666666554 479
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChH
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~ 626 (1493)
+||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.++.
T Consensus 253 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~ 332 (391)
T 1xti_A 253 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSD 332 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHH
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
.|+||+||+||.|..|.|++++++.+
T Consensus 333 ~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 333 TYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp HHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred HHHHhcccccCCCCceEEEEEEcccc
Confidence 99999999999999999999998764
No 26
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1e-44 Score=442.57 Aligned_cols=344 Identities=24% Similarity=0.430 Sum_probs=269.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccC--CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~--~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
..+|++++|++.++++|.+.||..|+|+|.++++.++ .+ ++++++||||||||++|++|++.++..
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~----------- 71 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLL-HNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP----------- 71 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-CSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-----------
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-----------
Confidence 3579999999999999999999999999999999555 44 899999999999999999999976632
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
...+.++||++||++|+.|+++.+..++...++.+...+|+...... .
T Consensus 72 ----------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 119 (395)
T 3pey_A 72 ----------------------------EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----Q 119 (395)
T ss_dssp ----------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----C
T ss_pred ----------------------------CCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----c
Confidence 12446799999999999999999999998888888888887543221 3
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
.+++|+|+||++|.+++...... +.++++|||||||++.+ .++...+..++..+
T Consensus 120 ~~~~iiv~T~~~l~~~~~~~~~~---~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~---------------------- 174 (395)
T 3pey_A 120 INAQVIVGTPGTVLDLMRRKLMQ---LQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL---------------------- 174 (395)
T ss_dssp BCCSEEEECHHHHHHHHHTTCBC---CTTCCEEEEETHHHHHHSTTHHHHHHHHHHTS----------------------
T ss_pred CCCCEEEEcHHHHHHHHHcCCcc---cccCCEEEEEChhhhcCccccHHHHHHHHHhC----------------------
Confidence 46799999999999998765443 55789999999999987 46666666665443
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
+...|++++|||+++.+.......... +.........
T Consensus 175 -----------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~~~~-------- 211 (395)
T 3pey_A 175 -----------PKDTQLVLFSATFADAVRQYAKKIVPN------------------------ANTLELQTNE-------- 211 (395)
T ss_dssp -----------CTTCEEEEEESCCCHHHHHHHHHHSCS------------------------CEEECCCGGG--------
T ss_pred -----------CCCcEEEEEEecCCHHHHHHHHHhCCC------------------------CeEEEccccc--------
Confidence 344799999999987765544211100 0000000000
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHhhC-C
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQH-P 544 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~-~ 544 (1493)
............+ ....+...+..++... .
T Consensus 212 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (395)
T 3pey_A 212 ------------------------------------------------VNVDAIKQLYMDCKNEADKFDVLTELYGLMTI 243 (395)
T ss_dssp ------------------------------------------------CSCTTEEEEEEECSSHHHHHHHHHHHHTTTTS
T ss_pred ------------------------------------------------cccccccEEEEEcCchHHHHHHHHHHHHhccC
Confidence 0000000001111 1223444444544443 4
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCC-
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR- 623 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~- 623 (1493)
+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+|++||+||+|.
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~ 323 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTL 323 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBC
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -----ChHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 624 -----TSEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 624 -----s~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
++..|+||+||+||.|..|.|++++.+.+.
T Consensus 324 ~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 324 ANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp TTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred CcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 999999999999999999999999987543
No 27
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=9.2e-45 Score=457.21 Aligned_cols=340 Identities=17% Similarity=0.207 Sum_probs=266.9
Q ss_pred cccCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 770 WVKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 770 f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
+.++++++.+.+.|+. +||..|+|+|.++|+. +..|+|+++++|||+|||++|++|++.
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~-il~g~d~lv~~pTGsGKTl~~~lpal~------------------- 82 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINV-TMAGKEVFLVMPTGGGKSLCYQLPALC------------------- 82 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHH-HHTTCCEEEECCTTSCTTHHHHHHHHT-------------------
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHH-HHcCCCEEEEECCCChHHHHHHHHHHH-------------------
Confidence 3468899999999998 6999999999999985 457899999999999999999999973
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH---h--
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI---L-- 923 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~---l-- 923 (1493)
.+.++|||+||++|+.|+.+.+..+ ++.+..+.|+......... +
T Consensus 83 --------------------------~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~ 132 (591)
T 2v1x_A 83 --------------------------SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVN 132 (591)
T ss_dssp --------------------------SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHC
T ss_pred --------------------------cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhc
Confidence 1237999999999999999999987 4888999999887655432 2
Q ss_pred -cCCCcEEEECcHHHH------HHHHhCcCccccccceeEEEecccchhccCC--ChhHHHH--HHHHhcccCCCCCceE
Q psy16310 924 -NKCPHILVATPGRLW------EFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKN--ILDRVTMTETSQPRQT 992 (1493)
Q Consensus 924 -~~~~~IlV~TP~rl~------~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~--~~~~l~~--il~~l~~~~~~~~~q~ 992 (1493)
...++|+|+||++|. +.+.. ...+.++++|||||||++++|| |.+.+.. ++... .+..++
T Consensus 133 ~~~~~~Ilv~Tpe~L~~~~~~~~~l~~----~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~-----~~~~~i 203 (591)
T 2v1x_A 133 KNSELKLIYVTPEKIAKSKMFMSRLEK----AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ-----FPNASL 203 (591)
T ss_dssp TTCCCCEEEECHHHHHSCHHHHHHHHH----HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH-----CTTSEE
T ss_pred ccCCCCEEEEChhHhhccHHHHHHHHh----hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh-----CCCCcE
Confidence 456899999999874 22322 1235678999999999999998 6666544 22222 256899
Q ss_pred EEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec--ccchhhHHH
Q psy16310 993 FVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK--HDEKDSYLY 1070 (1493)
Q Consensus 993 ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l~ 1070 (1493)
++||||++..+...+... +....+..+.. .. ...++........ ...+...+.
T Consensus 204 i~lSAT~~~~v~~~i~~~----------------------l~~~~~~~~~~--~~-~r~nl~~~v~~~~~~~~~~~~~l~ 258 (591)
T 2v1x_A 204 IGLTATATNHVLTDAQKI----------------------LCIEKCFTFTA--SF-NRPNLYYEVRQKPSNTEDFIEDIV 258 (591)
T ss_dssp EEEESSCCHHHHHHHHHH----------------------TTCCSCEEEEC--CC-CCTTEEEEEEECCSSHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHH----------------------hCCCCcEEEec--CC-CCcccEEEEEeCCCcHHHHHHHHH
Confidence 999999997765544222 22222222111 00 0111111111111 123345556
Q ss_pred HHHHh--CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccE
Q psy16310 1071 YFILQ--HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148 (1493)
Q Consensus 1071 ~~l~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~ 1148 (1493)
.++.. .++++||||+|++.++.++..|...|+.+..|||+|++.+|..+++.|++|+++|||||+++++|||+|+|++
T Consensus 259 ~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~ 338 (591)
T 2v1x_A 259 KLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRF 338 (591)
T ss_dssp HHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEE
T ss_pred HHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccE
Confidence 66654 3678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHH
Q psy16310 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193 (1493)
Q Consensus 1149 VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~ 1193 (1493)
||||++|.+.+.|+||+|||||.|+.|.|++|+.+.|...+..+.
T Consensus 339 VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 339 VIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp EEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred EEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999988877776653
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.1e-44 Score=427.16 Aligned_cols=334 Identities=34% Similarity=0.506 Sum_probs=271.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHH
Q psy16310 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854 (1493)
Q Consensus 775 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 854 (1493)
|++.+.++|..+||..|+|+|.++++. +..++++++++|||+|||++|++|+++.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~-i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------------------ 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPL-MLQGKNVVVRAKTGSGKTAAYAIPILEL------------------------ 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHH------------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCCEEEEcCCCCcHHHHHHHHHHhh------------------------
Confidence 578999999999999999999999985 5577899999999999999999998752
Q ss_pred HHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECc
Q psy16310 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 934 (1493)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP 934 (1493)
+.++||++||++|+.|+++.++.++...++++..++||.....+...+.. ++|+|+||
T Consensus 56 ---------------------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~ 113 (337)
T 2z0m_A 56 ---------------------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATP 113 (337)
T ss_dssp ---------------------TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECH
T ss_pred ---------------------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECH
Confidence 23599999999999999999999998889999999999988877766654 79999999
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCc
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~ 1014 (1493)
++|.+++..+.. .+.++++||+||||++.++++...+..++..+ +...+++++|||++..+...+.....
T Consensus 114 ~~l~~~~~~~~~---~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~-----~~~~~~~~~SAT~~~~~~~~~~~~~~-- 183 (337)
T 2z0m_A 114 GRLLDLWSKGVI---DLSSFEIVIIDEADLMFEMGFIDDIKIILAQT-----SNRKITGLFSATIPEEIRKVVKDFIT-- 183 (337)
T ss_dssp HHHHHHHHTTSC---CGGGCSEEEEESHHHHHHTTCHHHHHHHHHHC-----TTCSEEEEEESCCCHHHHHHHHHHSC--
T ss_pred HHHHHHHHcCCc---chhhCcEEEEEChHHhhccccHHHHHHHHhhC-----CcccEEEEEeCcCCHHHHHHHHHhcC--
Confidence 999998876543 35678999999999999999999998888776 35688999999999876554432111
Q ss_pred CcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH-hCCCcEEEEecchhhHHHH
Q psy16310 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPGRTLVFCNSISSVKRL 1093 (1493)
Q Consensus 1015 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~IVF~~s~~~~~~l 1093 (1493)
.+..+... .....+...+..+....+ .....+. ..++++||||+++..++.+
T Consensus 184 ----------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~~~~~~~l 236 (337)
T 2z0m_A 184 ----------------------NYEEIEAC---IGLANVEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRTRNRVAKL 236 (337)
T ss_dssp ----------------------SCEEEECS---GGGGGEEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSCHHHHHHH
T ss_pred ----------------------Cceeeecc---cccCCceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcCHHHHHHH
Confidence 11111111 111223333333333222 2223333 4467999999999999999
Q ss_pred HHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1094 ~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
+..|. .+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||+||+||.|+
T Consensus 237 ~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~ 312 (337)
T 2z0m_A 237 VRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGR 312 (337)
T ss_dssp HTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGC
T ss_pred HHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCC
Confidence 98886 57889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCHHHHHHHHHhcc
Q psy16310 1174 EGLTLVLIESDEIPLYIKMFNSLE 1197 (1493)
Q Consensus 1174 ~G~~i~l~~~~e~~~~~~~~~~~~ 1197 (1493)
.|.+++|+. .+...+..+.+.++
T Consensus 313 ~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 313 KGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CEEEEEEES-SCHHHHHHHC----
T ss_pred CceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999 78777777765543
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2e-44 Score=450.50 Aligned_cols=346 Identities=20% Similarity=0.300 Sum_probs=273.7
Q ss_pred ccccccCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 767 MAEWVKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
|.+|++++|++.+.+.|++ +||..|+|+|.++|+. +..|+|+++++|||+|||++|++|++..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~-il~g~d~lv~apTGsGKTl~~~lp~l~~--------------- 64 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDT-VLSGRDCLVVMPTGGGKSLCYQIPALLL--------------- 64 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHH-HHTTCCEEEECSCHHHHHHHHHHHHHHS---------------
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHH-HHcCCCEEEECCCCcHHHHHHHHHHHHh---------------
Confidence 4679999999999999998 8999999999999985 4577899999999999999999998731
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH----
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---- 921 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---- 921 (1493)
...+|||+|+++|+.|+.+.+..+ ++.+..+.|+........
T Consensus 65 ------------------------------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~ 110 (523)
T 1oyw_A 65 ------------------------------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTG 110 (523)
T ss_dssp ------------------------------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHH
T ss_pred ------------------------------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHH
Confidence 136899999999999999999886 478888988887655432
Q ss_pred HhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCC--ChhHHHHHHHHhcccCCCCCceEEEEeccc
Q psy16310 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTFVFSATL 999 (1493)
Q Consensus 922 ~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~--~~~~l~~il~~l~~~~~~~~~q~ll~SATl 999 (1493)
.....++|+|+||++|........ ....++++|||||||++.+|| |.+.+..+...... .+..+++++|||+
T Consensus 111 ~~~~~~~ilv~Tpe~l~~~~~~~~---l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~---~~~~~~i~lSAT~ 184 (523)
T 1oyw_A 111 CRTGQIRLLYIAPERLMLDNFLEH---LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR---FPTLPFMALTATA 184 (523)
T ss_dssp HHHTCCSEEEECHHHHTSTTHHHH---HTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH---CTTSCEEEEESCC
T ss_pred HhcCCCCEEEECHHHHhChHHHHH---HhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh---CCCCCEEEEeCCC
Confidence 234568999999999853211111 123578999999999999988 55554443222111 1458899999999
Q ss_pred ccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CC
Q psy16310 1000 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PG 1078 (1493)
Q Consensus 1000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~ 1078 (1493)
+..+...+. ..+.+..+..+.... . ..++ .+.......+...+..++... ++
T Consensus 185 ~~~~~~~i~----------------------~~l~~~~~~~~~~~~--~-r~~l--~~~v~~~~~~~~~l~~~l~~~~~~ 237 (523)
T 1oyw_A 185 DDTTRQDIV----------------------RLLGLNDPLIQISSF--D-RPNI--RYMLMEKFKPLDQLMRYVQEQRGK 237 (523)
T ss_dssp CHHHHHHHH----------------------HHHTCCSCEEEECCC--C-CTTE--EEEEEECSSHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHH----------------------HHhCCCCCeEEeCCC--C-CCce--EEEEEeCCCHHHHHHHHHHhcCCC
Confidence 976544332 222233332221110 0 1111 223334456667777777665 46
Q ss_pred cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCCh
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~ 1158 (1493)
++||||+|++.++.++..|...|+.+..|||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||||++|.+.
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~ 317 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSH
T ss_pred cEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHh
Q psy16310 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1159 ~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
+.|+||+||+||.|..|.|++|+++.|...++.+...
T Consensus 318 ~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 318 ESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp HHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999999999999999999999988888777654
No 30
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.5e-45 Score=449.69 Aligned_cols=355 Identities=26% Similarity=0.433 Sum_probs=165.0
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
...|+++++++.+++.+...||..|+|+|.++++ .+..++|+++++|||||||++|++|+++.+..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------------- 85 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------- 85 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-------------
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHhhc-------------
Confidence 3569999999999999999999999999999998 55578999999999999999999999977632
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
...++++||++||++|+.|+++.+..+....++++..++|+.........+. +
T Consensus 86 --------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~ 138 (394)
T 1fuu_A 86 --------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-D 138 (394)
T ss_dssp --------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-H
T ss_pred --------------------------cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-C
Confidence 1245679999999999999999999998888999999999998776655554 5
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|.+.+...... +.++++||+||||++.++++...+..++..+
T Consensus 139 ~~i~v~T~~~l~~~~~~~~~~---~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~------------------------- 190 (394)
T 1fuu_A 139 AQIVVGTPGRVFDNIQRRRFR---TDKIKMFILDEADEMLSSGFKEQIYQIFTLL------------------------- 190 (394)
T ss_dssp CSEEEECHHHHHHHHHTTSSC---CTTCCEEEEETHHHHHHTTCHHHHHHHHHHS-------------------------
T ss_pred CCEEEECHHHHHHHHHhCCcc---hhhCcEEEEEChHHhhCCCcHHHHHHHHHhC-------------------------
Confidence 699999999999998865443 4578999999999999999998888888765
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+...|++++|||+++.+.......... +...............
T Consensus 191 --------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~----- 233 (394)
T 1fuu_A 191 --------PPTTQVVLLSATMPNDVLEVTTKFMRN------------------------PVRILVKKDELTLEGI----- 233 (394)
T ss_dssp --------CTTCEEEEECSSCCHHHHHHHHHHCCS------------------------CEEEEECC-------------
T ss_pred --------CCCceEEEEEEecCHHHHHHHHHhcCC------------------------CeEEEecCccccCCCc-----
Confidence 344799999999997655433211100 0000000000000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHhh-CCCcE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQ-HPGRT 547 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~-~~~~~ 547 (1493)
......+ ....+...+..++.. ..+++
T Consensus 234 ---------------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (394)
T 1fuu_A 234 ---------------------------------------------------KQFYVNVEEEEYKYECLTDLYDSISVTQA 262 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------eEEEEEcCchhhHHHHHHHHHhcCCCCcE
Confidence 0000000 001122222233322 24689
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.++..
T Consensus 263 lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~ 342 (394)
T 1fuu_A 263 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKEN 342 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
|+||+||+||.|+.|.|+++++++|...+..+..
T Consensus 343 ~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 343 YIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp ----------------------------------
T ss_pred HHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 9999999999999999999999998877776644
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.3e-44 Score=443.92 Aligned_cols=331 Identities=20% Similarity=0.258 Sum_probs=259.6
Q ss_pred HHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHH
Q psy16310 779 IIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 857 (1493)
Q Consensus 779 l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (1493)
+.+.+++ .|| .|||+|.++|+. +..|+|++++||||||||++|++|++..+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~-i~~~~~~lv~apTGsGKT~~~l~~~~~~~-------------------------- 61 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKR-IVQGKSFTMVAPTGVGKTTFGMMTALWLA-------------------------- 61 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHH-HTTTCCEECCSCSSSSHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHH-HhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------------------------
Confidence 3445555 366 899999999995 45778999999999999999999988654
Q ss_pred HHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCH---HHHHHHhcCC-CcEEEEC
Q psy16310 858 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST---EKQLRILNKC-PHILVAT 933 (1493)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~---~~~~~~l~~~-~~IlV~T 933 (1493)
..++++|||+||++||.|+++.++.++. .++++..++||.+. ..+...+..+ ++|+|+|
T Consensus 62 ----------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~T 124 (414)
T 3oiy_A 62 ----------------RKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFS 124 (414)
T ss_dssp ----------------TTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEE
T ss_pred ----------------cCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEEC
Confidence 2345799999999999999999999887 88999999999988 5555666554 8999999
Q ss_pred cHHHHHHHHhCcCccccccceeEEEecccchhcc-----------CCChhH-HHHHHHHhcc------cCCCCCceEEEE
Q psy16310 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHFPE-LKNILDRVTM------TETSQPRQTFVF 995 (1493)
Q Consensus 934 P~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-----------~~~~~~-l~~il~~l~~------~~~~~~~q~ll~ 995 (1493)
|++|.+++.. ..+.++++|||||||++.+ ++|.+. +..++..++. .......|+++|
T Consensus 125 p~~l~~~l~~-----~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~ 199 (414)
T 3oiy_A 125 TQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVS 199 (414)
T ss_dssp HHHHHHCHHH-----HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEES
T ss_pred HHHHHHHHHH-----hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEE
Confidence 9999888763 2355789999999986653 778887 7888877631 111266899999
Q ss_pred ecc-cccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH
Q psy16310 996 SAT-LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074 (1493)
Q Consensus 996 SAT-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 1074 (1493)
||| .|..+...+.. ..+. +...........+.+.+..+ .+...+..++.
T Consensus 200 SAT~~~~~~~~~~~~---------------------~~~~------~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~ 249 (414)
T 3oiy_A 200 SATAKPRGIRPLLFR---------------------DLLN------FTVGRLVSVARNITHVRISS---RSKEKLVELLE 249 (414)
T ss_dssp SCCSSCCSSTTHHHH---------------------HHHS------CCSSCCCCCCCSEEEEEESS---CCHHHHHHHHH
T ss_pred ecCCCcchhHHHHHH---------------------Hhhc------cCcCccccccccchheeecc---CHHHHHHHHHH
Confidence 999 55443322210 0011 01111112233444444433 45666777777
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhcCCCcc-ccccCCCHHHHHHHHHHHhcCCCCeEEe----ehhhhccccCCC-ccE
Q psy16310 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPL-PLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPG-IEH 1148 (1493)
Q Consensus 1075 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~-~lhg~m~~~~R~~~~~~F~~g~~~VLVa----Tdv~~~GiDip~-v~~ 1148 (1493)
..++++||||+++..|+.++..|...|+.+. .+||+ +|. ++.|++|+++|||| |+++++|+|+|+ |++
T Consensus 250 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~ 323 (414)
T 3oiy_A 250 IFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKY 323 (414)
T ss_dssp HHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCE
T ss_pred HcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCE
Confidence 7779999999999999999999999999998 99995 444 99999999999999 999999999999 999
Q ss_pred EEEecCC--CChhHHHHHHhccCCCC----CCCeEEEEecCCCHHHHHHHHHhcc
Q psy16310 1149 VIHYHVP--RTSEIYIHRSGRTARAN----NEGLTLVLIESDEIPLYIKMFNSLE 1197 (1493)
Q Consensus 1149 VI~~d~p--~s~~~yiqr~GR~gR~g----~~G~~i~l~~~~e~~~~~~~~~~~~ 1197 (1493)
||+||+| .+..+|+||+|||||.| +.|.+++|+ .+...+..+.+.++
T Consensus 324 VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 324 VIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999999 99999999999999987 589999999 67777777777766
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.8e-43 Score=443.75 Aligned_cols=342 Identities=18% Similarity=0.236 Sum_probs=260.7
Q ss_pred cccCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccch
Q psy16310 154 VKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 232 (1493)
Q Consensus 154 ~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 232 (1493)
.++++++.+.+.|.. +||..|+|+|.++|+ ++..|+|+++++|||+|||++|++|++.
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~-~il~g~d~lv~~pTGsGKTl~~~lpal~-------------------- 82 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETIN-VTMAGKEVFLVMPTGGGKSLCYQLPALC-------------------- 82 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHH-HHHTTCCEEEECCTTSCTTHHHHHHHHT--------------------
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHH-HHHcCCCEEEEECCCChHHHHHHHHHHH--------------------
Confidence 468899999999998 599999999999998 5567899999999999999999999972
Q ss_pred HHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH------h
Q psy16310 233 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI------L 306 (1493)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~------l 306 (1493)
...++|||+||++|+.|+.+.+..+ ++.+..++|+......... .
T Consensus 83 -------------------------~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~ 133 (591)
T 2v1x_A 83 -------------------------SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNK 133 (591)
T ss_dssp -------------------------SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCT
T ss_pred -------------------------cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcc
Confidence 1247999999999999999999887 6888899999876655332 2
Q ss_pred cCCCCEEEeCcHHHH------HHHHcCCccccccccccEEEEecCchhhhcC--ChhhHHH--HHHhhccccCCCccccc
Q psy16310 307 NKCPHILVATPGRLW------EFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKN--ILDRVTMTETSQPRQTM 376 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~------~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~--il~~l~~~~~~~~~~~~ 376 (1493)
...++|+|+||++|. +.+.. ...+.++++|||||||++++|+ |.+.+.. ++...
T Consensus 134 ~~~~~Ilv~Tpe~L~~~~~~~~~l~~----~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~------------ 197 (591)
T 2v1x_A 134 NSELKLIYVTPEKIAKSKMFMSRLEK----AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ------------ 197 (591)
T ss_dssp TCCCCEEEECHHHHHSCHHHHHHHHH----HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH------------
T ss_pred cCCCCEEEEChhHhhccHHHHHHHHh----hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh------------
Confidence 456899999999874 22322 1234578999999999999887 6665543 12111
Q ss_pred cccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhh
Q psy16310 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 456 (1493)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (1493)
.+..++++||||+++.+...+. .++....+.... .
T Consensus 198 ---------------------~~~~~ii~lSAT~~~~v~~~i~----------------------~~l~~~~~~~~~--~ 232 (591)
T 2v1x_A 198 ---------------------FPNASLIGLTATATNHVLTDAQ----------------------KILCIEKCFTFT--A 232 (591)
T ss_dssp ---------------------CTTSEEEEEESSCCHHHHHHHH----------------------HHTTCCSCEEEE--C
T ss_pred ---------------------CCCCcEEEEecCCCHHHHHHHH----------------------HHhCCCCcEEEe--c
Confidence 2347899999999976544321 111110000000 0
Q ss_pred hhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHH
Q psy16310 457 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 536 (1493)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 536 (1493)
..... .+++.+.. .......+...+
T Consensus 233 ----------------~~~r~-nl~~~v~~--------------------------------------~~~~~~~~~~~l 257 (591)
T 2v1x_A 233 ----------------SFNRP-NLYYEVRQ--------------------------------------KPSNTEDFIEDI 257 (591)
T ss_dssp ----------------CCCCT-TEEEEEEE--------------------------------------CCSSHHHHHHHH
T ss_pred ----------------CCCCc-ccEEEEEe--------------------------------------CCCcHHHHHHHH
Confidence 00000 00000000 000011233445
Q ss_pred HHHHhh--CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCc
Q psy16310 537 YYFILQ--HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 614 (1493)
Q Consensus 537 ~~~l~~--~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~ 614 (1493)
..++.. .++++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|+
T Consensus 258 ~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~ 337 (591)
T 2v1x_A 258 VKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVR 337 (591)
T ss_dssp HHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEE
T ss_pred HHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCccccc
Confidence 555543 357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 615 ~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
+||+||+|.|+..|+||+|||||.|.+|.|++|+++.|......+..
T Consensus 338 ~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 338 FVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTT
T ss_pred EEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988877666543
No 33
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.7e-43 Score=415.65 Aligned_cols=330 Identities=35% Similarity=0.535 Sum_probs=261.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHH
Q psy16310 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 237 (1493)
Q Consensus 158 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (1493)
|++.+.++|.++||..|+|+|.++++ .+..++++++++|||||||++|++|+++.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~-~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------------------ 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIP-LMLQGKNVVVRAKTGSGKTAAYAIPILEL------------------------ 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHH------------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHH-HHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------------------
Confidence 57899999999999999999999998 56678899999999999999999998742
Q ss_pred HHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCc
Q psy16310 238 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 317 (1493)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP 317 (1493)
+.++||++||++|+.|+++.+..++...++.+..++|+.....+...+.. ++|+|+||
T Consensus 56 ---------------------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~ 113 (337)
T 2z0m_A 56 ---------------------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATP 113 (337)
T ss_dssp ---------------------TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECH
T ss_pred ---------------------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECH
Confidence 24599999999999999999999988889999999999988877766654 79999999
Q ss_pred HHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCC
Q psy16310 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397 (1493)
Q Consensus 318 ~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1493)
++|.+++...... +.++++||+||||++.++++...+..++..+
T Consensus 114 ~~l~~~~~~~~~~---~~~~~~iViDEah~~~~~~~~~~~~~~~~~~--------------------------------- 157 (337)
T 2z0m_A 114 GRLLDLWSKGVID---LSSFEIVIIDEADLMFEMGFIDDIKIILAQT--------------------------------- 157 (337)
T ss_dssp HHHHHHHHTTSCC---GGGCSEEEEESHHHHHHTTCHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHcCCcc---hhhCcEEEEEChHHhhccccHHHHHHHHhhC---------------------------------
Confidence 9999988765543 4578999999999999999988888887655
Q ss_pred CCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcc
Q psy16310 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 477 (1493)
Q Consensus 398 ~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1493)
+...+++++|||+++.+...+...... ....... .. .
T Consensus 158 ~~~~~~~~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~--~~-~---------------- 194 (337)
T 2z0m_A 158 SNRKITGLFSATIPEEIRKVVKDFITN------------------------YEEIEAC--IG-L---------------- 194 (337)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHSCS------------------------CEEEECS--GG-G----------------
T ss_pred CcccEEEEEeCcCCHHHHHHHHHhcCC------------------------ceeeecc--cc-c----------------
Confidence 334688999999998765443211100 0000000 00 0
Q ss_pred hhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH-hhCCCcEEEEecchhh
Q psy16310 478 SYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISS 556 (1493)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l-~~~~~~~IIF~~s~~~ 556 (1493)
............. .......+ ...++++||||+++..
T Consensus 195 ----------------------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvf~~~~~~ 232 (337)
T 2z0m_A 195 ----------------------------------------ANVEHKFVHVKDD--WRSKVQALRENKDKGVIVFVRTRNR 232 (337)
T ss_dssp ----------------------------------------GGEEEEEEECSSS--SHHHHHHHHTCCCSSEEEECSCHHH
T ss_pred ----------------------------------------CCceEEEEEeChH--HHHHHHHHHhCCCCcEEEEEcCHHH
Confidence 0000000000000 01111222 2346789999999999
Q ss_pred HHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccc
Q psy16310 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 636 (1493)
Q Consensus 557 a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRag 636 (1493)
++.++..|. .+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.++..|+||+||+|
T Consensus 233 ~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~g 308 (337)
T 2z0m_A 233 VAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTG 308 (337)
T ss_dssp HHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBC
T ss_pred HHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccc
Confidence 999998886 5788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEecCCcchhhhhhh
Q psy16310 637 RANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 637 R~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|.|..|.|++++. .|......+.
T Consensus 309 R~g~~g~~~~~~~-~~~~~~~~i~ 331 (337)
T 2z0m_A 309 RMGRKGEAITFIL-NEYWLEKEVK 331 (337)
T ss_dssp GGGCCEEEEEEES-SCHHHHHHHC
T ss_pred cCCCCceEEEEEe-CcHHHHHHHH
Confidence 9999999999998 6666555553
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-44 Score=448.04 Aligned_cols=358 Identities=22% Similarity=0.358 Sum_probs=239.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
+..|...++++.+++.+...||..|+|+|.++|+.++.+ +++++++||||||||++|++|++..+...
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~----------- 186 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS----------- 186 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----------
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----------
Confidence 445667789999999999999999999999999966644 48999999999999999999999876331
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
..+.++|||+||++|+.|+++.++.++...++.+....++...... ..
T Consensus 187 ----------------------------~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 234 (508)
T 3fho_A 187 ----------------------------VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KI 234 (508)
T ss_dssp ----------------------------CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CC
T ss_pred ----------------------------CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cC
Confidence 2345799999999999999999999988777777766665433222 33
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.++|+|+||++|.+.+..+.. .+.++++|||||||++.+ .++...+..++..+ +...|++++|||+++.+.
T Consensus 235 ~~~Ivv~T~~~l~~~l~~~~~---~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~-----~~~~~~i~lSAT~~~~~~ 306 (508)
T 3fho_A 235 DAQIVIGTPGTVMDLMKRRQL---DARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL-----PRNTQIVLFSATFSERVE 306 (508)
T ss_dssp CCSEEEECHHHHHHHHHTTCS---CCTTCCEEEECCHHHHTTC--CHHHHHHHHHHS-----CTTCEEEEEESCCSTHHH
T ss_pred CCCEEEECHHHHHHHHHcCCc---cccCCCEEEEechhhhcccCCcHHHHHHHHHhC-----CcCCeEEEEeCCCCHHHH
Confidence 679999999999999887654 356789999999999987 67878888888776 357899999999997665
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec-ccchhhHHHHHHHh-CCCcEEE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFILQ-HPGRTLV 1082 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~-~~~~~IV 1082 (1493)
....... ..+..+.+.........+...+..+. ...+...+..++.. ..+++||
T Consensus 307 ~~~~~~~------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LV 362 (508)
T 3fho_A 307 KYAERFA------------------------PNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSII 362 (508)
T ss_dssp HHHHHHS------------------------TTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEE
T ss_pred HHHHHhc------------------------CCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEE
Confidence 5443221 11222222222222233333344432 33444455555443 3679999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC------C
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP------R 1156 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p------~ 1156 (1493)
||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++| .
T Consensus 363 F~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~ 442 (508)
T 3fho_A 363 FCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRP 442 (508)
T ss_dssp BCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----
T ss_pred EECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred ChhHHHHHHhccCCCCCCCeEEEEecC-CCHHHHHHHHHhcccc
Q psy16310 1157 TSEIYIHRSGRTARANNEGLTLVLIES-DEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1157 s~~~yiqr~GR~gR~g~~G~~i~l~~~-~e~~~~~~~~~~~~~~ 1199 (1493)
+...|+||+||+||.|+.|.+++|+.+ .+...+..+.+.++..
T Consensus 443 s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~ 486 (508)
T 3fho_A 443 DPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRP 486 (508)
T ss_dssp CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCC
T ss_pred CHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCC
Confidence 899999999999999999999999985 4556677777766543
No 35
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.3e-43 Score=438.42 Aligned_cols=346 Identities=20% Similarity=0.288 Sum_probs=264.0
Q ss_pred cccccccCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 150 MAEWVKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
+.+|++++|++.+.+.|.+ .||..|+|+|.++|+ ++..|+|+++++|||||||++|++|++..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~-~il~g~d~lv~apTGsGKTl~~~lp~l~~--------------- 64 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIID-TVLSGRDCLVVMPTGGGKSLCYQIPALLL--------------- 64 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHH-HHHTTCCEEEECSCHHHHHHHHHHHHHHS---------------
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHH-HHHcCCCEEEECCCCcHHHHHHHHHHHHh---------------
Confidence 3578999999999999998 799999999999998 55578899999999999999999998721
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH----
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---- 304 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~---- 304 (1493)
...+|||+|+++|+.|+.+.+..+ ++.+..++|+........
T Consensus 65 ------------------------------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~ 110 (523)
T 1oyw_A 65 ------------------------------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTG 110 (523)
T ss_dssp ------------------------------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHH
T ss_pred ------------------------------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHH
Confidence 136999999999999999999885 678888888877655432
Q ss_pred HhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCc
Q psy16310 305 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHF 382 (1493)
Q Consensus 305 ~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~ 382 (1493)
...+.++|+|+||++|...... ......++++|||||||++.+++ |.+.+..+......
T Consensus 111 ~~~~~~~ilv~Tpe~l~~~~~~---~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~---------------- 171 (523)
T 1oyw_A 111 CRTGQIRLLYIAPERLMLDNFL---EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR---------------- 171 (523)
T ss_dssp HHHTCCSEEEECHHHHTSTTHH---HHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH----------------
T ss_pred HhcCCCCEEEECHHHHhChHHH---HHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh----------------
Confidence 2235689999999998532111 11112478999999999999886 55554433211110
Q ss_pred chhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcccc
Q psy16310 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462 (1493)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1493)
.+..+++++|||+++.+...+. .++....+....
T Consensus 172 ---------------~~~~~~i~lSAT~~~~~~~~i~----------------------~~l~~~~~~~~~--------- 205 (523)
T 1oyw_A 172 ---------------FPTLPFMALTATADDTTRQDIV----------------------RLLGLNDPLIQI--------- 205 (523)
T ss_dssp ---------------CTTSCEEEEESCCCHHHHHHHH----------------------HHHTCCSCEEEE---------
T ss_pred ---------------CCCCCEEEEeCCCCHHHHHHHH----------------------HHhCCCCCeEEe---------
Confidence 1246899999999876543211 111111110000
Q ss_pred ccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh
Q psy16310 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 542 (1493)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 542 (1493)
... ..+. ..+.......+...+..++..
T Consensus 206 ---------~~~----------------------------~r~~---------------l~~~v~~~~~~~~~l~~~l~~ 233 (523)
T 1oyw_A 206 ---------SSF----------------------------DRPN---------------IRYMLMEKFKPLDQLMRYVQE 233 (523)
T ss_dssp ---------CCC----------------------------CCTT---------------EEEEEEECSSHHHHHHHHHHH
T ss_pred ---------CCC----------------------------CCCc---------------eEEEEEeCCCHHHHHHHHHHh
Confidence 000 0000 000111123344556666665
Q ss_pred C-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC
Q psy16310 543 H-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621 (1493)
Q Consensus 543 ~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~ 621 (1493)
. ++++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+
T Consensus 234 ~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~ 313 (523)
T 1oyw_A 234 QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 313 (523)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSC
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECC
Confidence 4 458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 622 P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
|.|+..|+||+|||||.|.+|.|++|+++.|......+...
T Consensus 314 p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 314 PRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998877766543
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.1e-42 Score=433.46 Aligned_cols=352 Identities=17% Similarity=0.224 Sum_probs=254.6
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
.+|| .|||+|..++|. +..|+ |++|+||+|||++|++|++...+
T Consensus 79 ~lG~-~pt~VQ~~~ip~-ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-------------------------------- 122 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVA-LHDGN--IAEMKTGEGKTLTSTLPVYLNAL-------------------------------- 122 (844)
T ss_dssp HHSC-CCCHHHHHHHHH-HHTTS--EEECCTTSCHHHHHHHHHHHHHT--------------------------------
T ss_pred HcCC-CCcHHHHHhhHH-HhCCC--EEEccCCcHHHHHHHHHHHHHHH--------------------------------
Confidence 4799 999999999994 55776 99999999999999999984332
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHh
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQL 943 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~ 943 (1493)
.+..++||+||++||.|+++.+..++.++++++.+++||.+...+.. ..++||+|||||+| .++|..
T Consensus 123 ----------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D 190 (844)
T 1tf5_A 123 ----------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRD 190 (844)
T ss_dssp ----------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHH
T ss_pred ----------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHH
Confidence 12369999999999999999999999999999999999998765433 34689999999999 777765
Q ss_pred CcC---ccccccceeEEEecccchhc-cCC---------------ChhHHHHHHHHhcc----cCCCCCceEE-------
Q psy16310 944 GHF---HLTELYKINYLVIDETDRMI-ESG---------------HFPELKNILDRVTM----TETSQPRQTF------- 993 (1493)
Q Consensus 944 ~~~---~~~~l~~l~~lVlDEah~ll-~~~---------------~~~~l~~il~~l~~----~~~~~~~q~l------- 993 (1493)
+.. ....++.+.++||||||+|+ +++ |+..+..|+..++. .-.+..+|++
T Consensus 191 ~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~ 270 (844)
T 1tf5_A 191 NMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMT 270 (844)
T ss_dssp TTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHH
T ss_pred hhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHH
Confidence 421 12346789999999999998 665 56778888877741 0012467888
Q ss_pred ----------EEeccccc---chHhHHhhhccC--cC---------------cccccCC---CchhHHH-H--hHhccCC
Q psy16310 994 ----------VFSATLTH---SLKNSLNLKKGQ--SK---------------SKKVSKG---DPSIKRL-Q--DLLNIKS 1037 (1493)
Q Consensus 994 ----------l~SATl~~---~~~~~~~~~~~~--~~---------------~~~~~~~---~~~~~~l-~--~~~~~~~ 1037 (1493)
+||||++. .+...+...... .. ...+..+ ...+... . ..+.+..
T Consensus 271 ~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~ 350 (844)
T 1tf5_A 271 KAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQN 350 (844)
T ss_dssp HHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCC
T ss_pred HHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecc
Confidence 99999873 333222111000 00 0000000 0000000 0 0000100
Q ss_pred ---------------------------------------CcEEeccccccccccceeeEEEecccchhhHHHHHHHh---
Q psy16310 1038 ---------------------------------------PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ--- 1075 (1493)
Q Consensus 1038 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--- 1075 (1493)
..++.+.........-....+.+...+|...+...+..
T Consensus 351 e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~ 430 (844)
T 1tf5_A 351 ESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYM 430 (844)
T ss_dssp CEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH
T ss_pred cccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh
Confidence 01111110000000001123455666788777776653
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCC--------Ccc
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP--------GIE 1147 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip--------~v~ 1147 (1493)
.+.++||||+|+..++.|+..|...|+++..+||++.+.+|..+.+.|+.| .|+||||+++||+||+ ++.
T Consensus 431 ~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl 508 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGL 508 (844)
T ss_dssp HTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSE
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCc
Confidence 367899999999999999999999999999999999988888777667655 6999999999999999 888
Q ss_pred EEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1148 HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1148 ~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
+||||++|.+.+.|+||+|||||+|.+|.+++|++..|.
T Consensus 509 ~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 509 AVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred EEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999999999999999999999999999999998763
No 37
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.5e-42 Score=425.56 Aligned_cols=332 Identities=20% Similarity=0.254 Sum_probs=246.9
Q ss_pred HHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHH
Q psy16310 162 IIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 240 (1493)
Q Consensus 162 l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1493)
+.+.+.+ .|| .|+|+|.++++ .+..++|++++||||||||++|++|++..+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~-~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-------------------------- 61 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAK-RIVQGKSFTMVAPTGVGKTTFGMMTALWLA-------------------------- 61 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHH-HHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHhcCC-CCCHHHHHHHH-HHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------------------------
Confidence 3444544 366 79999999999 455788999999999999999999987654
Q ss_pred HHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCH---HHHHHHhcCC-CCEEEeC
Q psy16310 241 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST---EKQLRILNKC-PHILVAT 316 (1493)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~---~~~~~~l~~~-~~IiV~T 316 (1493)
..++++|||+||++||.|+++.+..++. .++++..++|+.+. ..++..+..+ ++|+|+|
T Consensus 62 ----------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~T 124 (414)
T 3oiy_A 62 ----------------RKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFS 124 (414)
T ss_dssp ----------------TTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEE
T ss_pred ----------------cCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEEC
Confidence 2346799999999999999999999887 88999999999988 5556666555 8999999
Q ss_pred cHHHHHHHHcCCccccccccccEEEEecCchhhh-----------cCChhh-HHHHHHhhccccCCCccccccccCCcch
Q psy16310 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHFPE-LKNILDRVTMTETSQPRQTMIESGHFPE 384 (1493)
Q Consensus 317 P~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-----------~~~~~~-l~~il~~l~~~~~~~~~~~~~~~~~~~~ 384 (1493)
|++|.+++.. ..+.++++|||||||++.+ ++|.+. +..++..+.....
T Consensus 125 p~~l~~~l~~-----~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~--------------- 184 (414)
T 3oiy_A 125 TQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI--------------- 184 (414)
T ss_dssp HHHHHHCHHH-----HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC---------------
T ss_pred HHHHHHHHHH-----hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchh---------------
Confidence 9999888763 2245789999999987654 677777 7777776631100
Q ss_pred hhhhhhhccccCCCCCceEEEEeec-cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccc
Q psy16310 385 LKNILDRVTMTETSQPRQTFVFSAT-LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKT 463 (1493)
Q Consensus 385 ~~~~~~~~~~~~~~~~~q~il~SAT-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1493)
..........|+++|||| .|..+...+. ..++......
T Consensus 185 -------~~~l~~~~~~~~i~~SAT~~~~~~~~~~~---------------------~~~~~~~~~~------------- 223 (414)
T 3oiy_A 185 -------YERPKNLKPGILVVSSATAKPRGIRPLLF---------------------RDLLNFTVGR------------- 223 (414)
T ss_dssp -------CCCCTTCCCCEEEESSCCSSCCSSTTHHH---------------------HHHHSCCSSC-------------
T ss_pred -------hhhcccCCCceEEEEecCCCcchhHHHHH---------------------HHhhccCcCc-------------
Confidence 000001256799999999 4543321110 0000000000
Q ss_pred cchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC
Q psy16310 464 LTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 543 (1493)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 543 (1493)
.......+......+ .+...+..++...
T Consensus 224 -------------------------------------------------~~~~~~~i~~~~~~~---~~~~~l~~~l~~~ 251 (414)
T 3oiy_A 224 -------------------------------------------------LVSVARNITHVRISS---RSKEKLVELLEIF 251 (414)
T ss_dssp -------------------------------------------------CCCCCCSEEEEEESS---CCHHHHHHHHHHH
T ss_pred -------------------------------------------------cccccccchheeecc---CHHHHHHHHHHHc
Confidence 000000011111111 3455566667666
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCcc-ccccCCCHHHHHHHHHHHhcCCCeEEEE----echhhccCCCCC-CcEEE
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPL-PLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPG-IEHVI 617 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~~~~~-~lhg~~~~~~R~~vl~~Fr~g~~~VLVa----Tdv~~rGlDip~-v~~VI 617 (1493)
++++||||+++..|+.++..|...++.+. .+||. +|. ++.|++|+++|||| |+++++|+|+|+ |++||
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI 325 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 325 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEE
Confidence 78999999999999999999999999998 99995 333 99999999999999 999999999999 99999
Q ss_pred EecCC--CChHHHHHHHhccccCC----CCCeEEEEecCCcchhhhhh
Q psy16310 618 HYHVP--RTSEIYIHRSGRTARAN----NEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 618 ~yd~P--~s~~~yiQR~GRagR~g----~~G~~i~l~~~~e~~~~~~l 659 (1493)
+||+| .++..|+||+|||||.| +.|.|++|+ .|...+..+
T Consensus 326 ~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l 371 (414)
T 3oiy_A 326 FWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESL 371 (414)
T ss_dssp EESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHH
T ss_pred EECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHH
Confidence 99999 99999999999999988 589999999 454444444
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-43 Score=465.72 Aligned_cols=371 Identities=17% Similarity=0.164 Sum_probs=250.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
..|..+++++.+...+...++..|+|+|.++|+ ++..++|+|++||||||||++|++|++..+.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~-~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------------- 225 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAIS-CIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------------- 225 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHH-HHTTTCCEEEECCSSSHHHHHHHHHHHHHHH---------------
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHH-HHHcCCCEEEECCCCCChHHHHHHHHHHHHh---------------
Confidence 457777888877777777777789999999998 5778899999999999999999999997762
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
.+.++||++||++||.|+++.+..++. .++.++|+... ...+
T Consensus 226 ---------------------------~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~ 267 (1108)
T 3l9o_A 226 ---------------------------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDA 267 (1108)
T ss_dssp ---------------------------TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSC
T ss_pred ---------------------------cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCC
Confidence 345799999999999999999999764 57778888763 3557
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||++|.+++..+... +.++++|||||||++.+++|...+..++..+
T Consensus 268 ~IlV~Tpe~L~~~L~~~~~~---l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l-------------------------- 318 (1108)
T 3l9o_A 268 GCLVMTTEILRSMLYRGSEV---MREVAWVIFDEVHYMRDKERGVVWEETIILL-------------------------- 318 (1108)
T ss_dssp SEEEEEHHHHHHHHHHCSSH---HHHEEEEEEETGGGTTSHHHHHHHHHHHHHS--------------------------
T ss_pred CEEEeChHHHHHHHHcCccc---cccCCEEEEhhhhhccccchHHHHHHHHHhc--------------------------
Confidence 99999999999999876543 5589999999999999999999999888766
Q ss_pred hccccCCCCCceEEEEeeccchhhh--hhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLK--NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
+..+|+++||||+++... .++..... .+..+. ..... +..+
T Consensus 319 -------~~~~qvl~lSATipn~~e~a~~l~~~~~------------------------~~~~vi-~~~~r-p~pl---- 361 (1108)
T 3l9o_A 319 -------PDKVRYVFLSATIPNAMEFAEWICKIHS------------------------QPCHIV-YTNFR-PTPL---- 361 (1108)
T ss_dssp -------CTTSEEEEEECSCSSCHHHHHHHHHHTC------------------------SCEEEE-EECCC-SSCE----
T ss_pred -------CCCceEEEEcCCCCCHHHHHHHHHhhcC------------------------CCeEEE-ecCCC-cccc----
Confidence 345799999999986422 22111000 000000 00000 0000
Q ss_pred hhhccCCcchhhHHHHhcCCC--cchh--------hHHHhhhhccCCccccccccc-cc---cccccccccccccCchhh
Q psy16310 469 ILCKHDEKDSYLYYFILQHPG--RTLC--------EEIQDLLNIKSPKIVDLTEKI-GI---TKTLTESKILCKHDEKDS 534 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~k~~ 534 (1493)
. .+++..... .... ..+.................. .. ..................
T Consensus 362 --------~---~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (1108)
T 3l9o_A 362 --------Q---HYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIY 430 (1108)
T ss_dssp --------E---EEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHH
T ss_pred --------e---EEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHH
Confidence 0 000000000 0000 000000000000000000000 00 000000000000012222
Q ss_pred HHHHHHhh-CCCcEEEEecchhhHHHHHHHHHhcCC---------------------------------------Ccccc
Q psy16310 535 YLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKC---------------------------------------SPLPL 574 (1493)
Q Consensus 535 ~l~~~l~~-~~~~~IIF~~s~~~a~~L~~~L~~~~~---------------------------------------~~~~l 574 (1493)
.+...+.. ..+++||||+++..|+.++..|...++ +++.+
T Consensus 431 ~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~ 510 (1108)
T 3l9o_A 431 KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIH 510 (1108)
T ss_dssp HHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeee
Confidence 33334433 356999999999999999998865322 26889
Q ss_pred ccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC--------CCChHHHHHHHhccccCC--CCCeE
Q psy16310 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV--------PRTSEIYIHRSGRTARAN--NEGLT 644 (1493)
Q Consensus 575 hg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~--------P~s~~~yiQR~GRagR~g--~~G~~ 644 (1493)
||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+|+. |.++.+|+||+|||||.| ..|+|
T Consensus 511 Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ 590 (1108)
T 3l9o_A 511 HSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIV 590 (1108)
T ss_dssp CSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999997765 447888999999999999 68999
Q ss_pred EEEecCCc
Q psy16310 645 VVLIESDE 652 (1493)
Q Consensus 645 i~l~~~~e 652 (1493)
++++++..
T Consensus 591 ill~~~~~ 598 (1108)
T 3l9o_A 591 IMMIDEKM 598 (1108)
T ss_dssp EEEECCCC
T ss_pred EEEecCCc
Confidence 99997763
No 39
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=6.5e-42 Score=457.22 Aligned_cols=353 Identities=20% Similarity=0.239 Sum_probs=270.6
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
..|| +|||+|.++||. +..|+|++++||||||||++|++|++..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~-il~g~dvlv~ApTGSGKTl~~l~~il~~~--------------------------------- 118 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKR-IVQGKSFTMVAPTGVGKTTFGMMTALWLA--------------------------------- 118 (1104)
T ss_dssp HSSS-CCCHHHHHHHHH-HTTTCCEEECCSTTCCHHHHHHHHHHHHH---------------------------------
T ss_pred hcCC-CCCHHHHHHHHH-HHcCCCEEEEeCCCCcHHHHHHHHHHHHH---------------------------------
Confidence 4688 699999999995 45788999999999999998888887654
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCH---HHHHHHhcCC-CcEEEECcHHHHHH
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST---EKQLRILNKC-PHILVATPGRLWEF 940 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~---~~~~~~l~~~-~~IlV~TP~rl~~~ 940 (1493)
..++++|||+||++||.|+++.++.++ ..++++..++||.+. ..+...+..+ ++|+|+||++|+++
T Consensus 119 ---------~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~ 188 (1104)
T 4ddu_A 119 ---------RKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN 188 (1104)
T ss_dssp ---------TTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHS
T ss_pred ---------hcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHH
Confidence 234579999999999999999999987 778999999999987 6666777665 99999999999888
Q ss_pred HHhCcCccccccceeEEEecccch----------hcc-CCChhH-HHHHHHHhc------ccCCCCCceEEEEecc-ccc
Q psy16310 941 IQLGHFHLTELYKINYLVIDETDR----------MIE-SGHFPE-LKNILDRVT------MTETSQPRQTFVFSAT-LTH 1001 (1493)
Q Consensus 941 l~~~~~~~~~l~~l~~lVlDEah~----------ll~-~~~~~~-l~~il~~l~------~~~~~~~~q~ll~SAT-l~~ 1001 (1493)
+.. ..+.++++|||||||+ |++ +||... +..++..++ .......+|+++|||| .|.
T Consensus 189 l~~-----l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~ 263 (1104)
T 4ddu_A 189 REK-----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPR 263 (1104)
T ss_dssp HHH-----HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCC
T ss_pred HHh-----hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcH
Confidence 763 2356899999999965 445 899888 888888774 1111257899999999 554
Q ss_pred chHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEE
Q psy16310 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 1081 (1493)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~I 1081 (1493)
.+...+.. ..+. +.+.........+.+.++.+ ++...+..++...++++|
T Consensus 264 ~~~~~~~~---------------------~~l~------i~v~~~~~~~~~i~~~~~~~---~k~~~L~~ll~~~~~~~L 313 (1104)
T 4ddu_A 264 GIRPLLFR---------------------DLLN------FTVGRLVSVARNITHVRISS---RSKEKLVELLEIFRDGIL 313 (1104)
T ss_dssp SSTTHHHH---------------------HHTC------CCCCBCCCCCCCEEEEEESC---CCHHHHHHHHHHHCSSEE
T ss_pred HHHHHHhh---------------------ccee------EEeccCCCCcCCceeEEEec---CHHHHHHHHHHhcCCCEE
Confidence 43322110 0011 11112222344555555544 466677777777789999
Q ss_pred EEecchhhHHHHHHHHHhcCCCcc-ccccCCCHHHHHHHHHHHhcCCCCeEEe----ehhhhccccCCC-ccEEEEecCC
Q psy16310 1082 VFCNSISSVKRLTQLLTMLKCSPL-PLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPG-IEHVIHYHVP 1155 (1493)
Q Consensus 1082 VF~~s~~~~~~l~~~L~~~~~~~~-~lhg~m~~~~R~~~~~~F~~g~~~VLVa----Tdv~~~GiDip~-v~~VI~~d~p 1155 (1493)
|||+++..|+.++..|...|+.+. .+||+ |.+ +++|++|+++|||| |++++||||+|+ |++|||||+|
T Consensus 314 VF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P 387 (1104)
T 4ddu_A 314 IFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTP 387 (1104)
T ss_dssp EEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCC
T ss_pred EEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCC
Confidence 999999999999999999999998 99993 555 99999999999999 999999999999 9999999999
Q ss_pred C------------------------------------------------------------------------ChhHHHH
Q psy16310 1156 R------------------------------------------------------------------------TSEIYIH 1163 (1493)
Q Consensus 1156 ~------------------------------------------------------------------------s~~~yiq 1163 (1493)
. +..+|+|
T Consensus 388 ~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYih 467 (1104)
T 4ddu_A 388 SMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQ 467 (1104)
T ss_dssp EEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHH
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhc
Confidence 8 7889999
Q ss_pred HHhccCCCCC----CCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy16310 1164 RSGRTARANN----EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225 (1493)
Q Consensus 1164 r~GR~gR~g~----~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~ 1225 (1493)
|+|||||.|. .|.+++++ +|...+..+.+.+....++.-.|+++..+..+.+.++..++.
T Consensus 468 r~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~ 531 (1104)
T 4ddu_A 468 ASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRR 531 (1104)
T ss_dssp HHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHHHHHHHHHHHH
T ss_pred ccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCHHHHHHHHhHHHHH
Confidence 9999999654 34555555 777777777777653223444455555556666665555443
No 40
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-42 Score=459.88 Aligned_cols=363 Identities=17% Similarity=0.168 Sum_probs=258.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
..|..+++++.+...+...++..|+|+|.++|+. +..|++++++||||||||++|.+|++..+.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~-i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------------- 225 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISC-IDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------------- 225 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHH-HTTTCCEEEECCSSSHHHHHHHHHHHHHHH---------------
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHH-HHcCCCEEEECCCCCChHHHHHHHHHHHHh---------------
Confidence 3577788888888888888888999999999984 678899999999999999999999998762
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
.+.++||++||++|+.|+++.+..++. .+++++|+.+ ....+
T Consensus 226 ---------------------------~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~-------~~~~~ 267 (1108)
T 3l9o_A 226 ---------------------------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDIT-------INPDA 267 (1108)
T ss_dssp ---------------------------TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCB-------CCCSC
T ss_pred ---------------------------cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccc-------cCCCC
Confidence 235799999999999999999999764 6778888876 33568
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH--h
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK--N 1005 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~--~ 1005 (1493)
+|+|+|||+|.+++..+.. .+.++++|||||||+|.+++|...+..++..+ +...|+++||||+++... .
T Consensus 268 ~IlV~Tpe~L~~~L~~~~~---~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l-----~~~~qvl~lSATipn~~e~a~ 339 (1108)
T 3l9o_A 268 GCLVMTTEILRSMLYRGSE---VMREVAWVIFDEVHYMRDKERGVVWEETIILL-----PDKVRYVFLSATIPNAMEFAE 339 (1108)
T ss_dssp SEEEEEHHHHHHHHHHCSS---HHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS-----CTTSEEEEEECSCSSCHHHHH
T ss_pred CEEEeChHHHHHHHHcCcc---ccccCCEEEEhhhhhccccchHHHHHHHHHhc-----CCCceEEEEcCCCCCHHHHHH
Confidence 9999999999999987653 36689999999999999999999999998887 467999999999987533 3
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhcc-CCCcEEe-cccccc--------cccccee---------------eEE--
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNI-KSPKIVD-LTEKIG--------ITKTLTE---------------SKI-- 1058 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~~~~~--------~~~~~~~---------------~~~-- 1058 (1493)
++................+. .+...+.. ....... +..... ....+.. ...
T Consensus 340 ~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 417 (1108)
T 3l9o_A 340 WICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYK 417 (1108)
T ss_dssp HHHHHTCSCEEEEEECCCSS--CEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------------
T ss_pred HHHhhcCCCeEEEecCCCcc--cceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccc
Confidence 33221111100000000000 00000000 0000000 000000 0000000 000
Q ss_pred ----EecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCC------------------------------
Q psy16310 1059 ----LCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCS------------------------------ 1103 (1493)
Q Consensus 1059 ----~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~------------------------------ 1103 (1493)
..........++..+... .+++||||+++..|+.++..|...++.
T Consensus 418 ~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~ 497 (1108)
T 3l9o_A 418 GGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIK 497 (1108)
T ss_dssp -------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHH
T ss_pred cccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHH
Confidence 000022223334444433 569999999999999999998654322
Q ss_pred ---------ccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC--------CChhHHHHHHh
Q psy16310 1104 ---------PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP--------RTSEIYIHRSG 1166 (1493)
Q Consensus 1104 ---------~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p--------~s~~~yiqr~G 1166 (1493)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.| .+..+|+||+|
T Consensus 498 ~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~G 577 (1108)
T 3l9o_A 498 HILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSG 577 (1108)
T ss_dssp HHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHH
T ss_pred HHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhc
Confidence 6789999999999999999999999999999999999999999999976653 47778999999
Q ss_pred ccCCCC--CCCeEEEEecCC-CHHHHHHHHH
Q psy16310 1167 RTARAN--NEGLTLVLIESD-EIPLYIKMFN 1194 (1493)
Q Consensus 1167 R~gR~g--~~G~~i~l~~~~-e~~~~~~~~~ 1194 (1493)
||||.| ..|.|++++.+. +...+.++..
T Consensus 578 RAGR~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 578 RAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp HSCCSSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred ccCCCCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 999999 689999999876 4445555544
No 41
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-42 Score=432.95 Aligned_cols=351 Identities=23% Similarity=0.360 Sum_probs=225.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcc-CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
+..|...++++.+++.+...||..|+++|.++++.++.+ ++++|++||||||||++|++|+++++..
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~------------ 185 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA------------ 185 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT------------
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh------------
Confidence 345666789999999999999999999999999855533 3899999999999999999999987632
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
...++++|||+||++|+.|+++.+..++...++.+...+++...... ..
T Consensus 186 ---------------------------~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 234 (508)
T 3fho_A 186 ---------------------------SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KI 234 (508)
T ss_dssp ---------------------------TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CC
T ss_pred ---------------------------CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cC
Confidence 12346799999999999999999999988777777776666443322 33
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.++|+|+||++|.+.+...... +.++++|||||||++.+ .++...+..++..+
T Consensus 235 ~~~Ivv~T~~~l~~~l~~~~~~---~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~----------------------- 288 (508)
T 3fho_A 235 DAQIVIGTPGTVMDLMKRRQLD---ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL----------------------- 288 (508)
T ss_dssp CCSEEEECHHHHHHHHHTTCSC---CTTCCEEEECCHHHHTTC--CHHHHHHHHHHS-----------------------
T ss_pred CCCEEEECHHHHHHHHHcCCcc---ccCCCEEEEechhhhcccCCcHHHHHHHHHhC-----------------------
Confidence 6799999999999998866543 45789999999999987 57777777777655
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
+...|++++|||+++.+..+........ .........
T Consensus 289 ----------~~~~~~i~lSAT~~~~~~~~~~~~~~~~------------------------~~i~~~~~~--------- 325 (508)
T 3fho_A 289 ----------PRNTQIVLFSATFSERVEKYAERFAPNA------------------------NEIRLKTEE--------- 325 (508)
T ss_dssp ----------CTTCEEEEEESCCSTHHHHHHHHHSTTC------------------------EEECCCCCC---------
T ss_pred ----------CcCCeEEEEeCCCCHHHHHHHHHhcCCC------------------------eEEEecccc---------
Confidence 3347999999999876654432111000 000000000
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHhhC-CC
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQH-PG 545 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~-~~ 545 (1493)
.....+......+ ....+...+..++... .+
T Consensus 326 -----------------------------------------------~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~ 358 (508)
T 3fho_A 326 -----------------------------------------------LSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIG 358 (508)
T ss_dssp ---------------------------------------------------CCCCEEEEC--CHHHHHHHHHHHC---CC
T ss_pred -----------------------------------------------CCcccceEEEEECCchHHHHHHHHHHHHhcCCC
Confidence 0000000000111 1223444455555443 57
Q ss_pred cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCC---
Q psy16310 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP--- 622 (1493)
Q Consensus 546 ~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P--- 622 (1493)
++||||+++..+..++..|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+|++||+||+|
T Consensus 359 ~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~ 438 (508)
T 3fho_A 359 QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQ 438 (508)
T ss_dssp CEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-
T ss_pred cEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CChHHHHHHHhccccCCCCCeEEEEecCC-cchhhhhh
Q psy16310 623 ---RTSEIYIHRSGRTARANNEGLTVVLIESD-EIPLKTKF 659 (1493)
Q Consensus 623 ---~s~~~yiQR~GRagR~g~~G~~i~l~~~~-e~~~~~~l 659 (1493)
.++..|+||+||+||.|+.|.|++|+.+. +...+..+
T Consensus 439 ~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i 479 (508)
T 3fho_A 439 AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAI 479 (508)
T ss_dssp ----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHH
T ss_pred cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHH
Confidence 88999999999999999999999999854 44444444
No 42
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.3e-41 Score=423.89 Aligned_cols=396 Identities=17% Similarity=0.206 Sum_probs=256.4
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
.+|| +|||+|..++| +++.|+ |+.|+||+|||++|+||++...+
T Consensus 79 ~lG~-~pt~VQ~~~ip-~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-------------------------------- 122 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGV-ALHDGN--IAEMKTGEGKTLTSTLPVYLNAL-------------------------------- 122 (844)
T ss_dssp HHSC-CCCHHHHHHHH-HHHTTS--EEECCTTSCHHHHHHHHHHHHHT--------------------------------
T ss_pred HcCC-CCcHHHHHhhH-HHhCCC--EEEccCCcHHHHHHHHHHHHHHH--------------------------------
Confidence 4799 99999999999 566776 99999999999999999984321
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHc
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQL 326 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~ 326 (1493)
.+..|+||+||++||.|+++++..++.++++++++++||.+...+.. ..++||+|+|||+| .++|..
T Consensus 123 ----------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D 190 (844)
T 1tf5_A 123 ----------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRD 190 (844)
T ss_dssp ----------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHH
T ss_pred ----------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHH
Confidence 23459999999999999999999999999999999999998765433 34689999999999 677654
Q ss_pred CCc---cccccccccEEEEecCchhh-hcC---------------ChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 327 GHF---HLTELYKINYLVIDETDRMI-ESG---------------HFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 327 ~~~---~~~~l~~i~~lViDEAh~ll-~~~---------------~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
... ....++.+.++||||||+|| +++ |+..+..|+..+.... +
T Consensus 191 ~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~------------~------ 252 (844)
T 1tf5_A 191 NMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEK------------D------ 252 (844)
T ss_dssp TTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSS------------S------
T ss_pred hhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccc------------c------
Confidence 321 12236689999999999998 665 4566777776653200 0
Q ss_pred hhhhccccCCCCCceEE-----------------EEeeccch---hhhhhhhhhcc--ccccccc---------------
Q psy16310 388 ILDRVTMTETSQPRQTF-----------------VFSATLTH---SLKNSLNLKKG--QSKSKKV--------------- 430 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~i-----------------l~SATl~~---~~~~~~~~~~~--~~~~~~~--------------- 430 (1493)
....+..+|++ +||||++. .+...+..... ....-.+
T Consensus 253 ------y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~ 326 (844)
T 1tf5_A 253 ------YTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRL 326 (844)
T ss_dssp ------BCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCB
T ss_pred ------ceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccc
Confidence 00012345555 89999874 33222211000 0000000
Q ss_pred cCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCC-----CcchhhHHHhhhhccCC
Q psy16310 431 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-----GRTLCEEIQDLLNIKSP 505 (1493)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 505 (1493)
..+..+-.-+.+.+..+.. +.+........ .-.+..++ ..++ ..+.......+...+..
T Consensus 327 m~grr~sdGLhqaieake~--v~I~~e~~t~a-------------~It~q~~f-r~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 327 MKGRRYSEGLHQAIEAKEG--LEIQNESMTLA-------------TITFQNYF-RMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp CTTCCCSTTHHHHHHHHTT--CCCCCCEEEEE-------------EEEHHHHH-TTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred cCCCccchhhHHHHhhccc--ceecccccccc-------------eeeHHHHH-HHHhhhccCCcccchhHHHHHHHhCC
Confidence 0000000000111000000 00000000000 00011111 0000 00111111222222222
Q ss_pred ccccccccccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHH
Q psy16310 506 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582 (1493)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~ 582 (1493)
.+..+..............+.+....|...+...+.. .+.++||||+|+..++.|+..|...|+.+..+||++.+.+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 2222111111111111223445556788888777653 3568999999999999999999999999999999998888
Q ss_pred HHHHHHHHhcCCCeEEEEechhhccCCCC--------CCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 583 RLKNLDRFRDQNNSILLATDVAARGLDIP--------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 583 R~~vl~~Fr~g~~~VLVaTdv~~rGlDip--------~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
|..+.+.|+.| .||||||+|+||+||+ ++.+||+||+|.+...|+||+|||||+|.+|.+++|++.+|.
T Consensus 471 r~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 471 AQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 87776667666 6999999999999999 889999999999999999999999999999999999998874
No 43
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=6.1e-41 Score=416.22 Aligned_cols=351 Identities=16% Similarity=0.164 Sum_probs=230.5
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+|+|..++|. +..|+ |+.++||||||++|++|++...+
T Consensus 71 lg~-~p~~VQ~~~i~~-ll~G~--Iaem~TGsGKTlaf~LP~l~~~l--------------------------------- 113 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMV-LNERC--IAEMRTGEGKTLTATLPAYLNAL--------------------------------- 113 (853)
T ss_dssp HSC-CCCHHHHHHHHH-HHSSE--EEECCTTSCHHHHHHHHHHHHHT---------------------------------
T ss_pred cCC-CCChHHHhhccc-ccCCe--eeeecCCchHHHHHHHHHHHHHH---------------------------------
Confidence 464 899999999994 55665 99999999999999999986442
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~ 944 (1493)
.+.+++||+||++||.|+++.+..++.++++++.+++||.+.... .+..+++|+|||||+| .++|..+
T Consensus 114 ---------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~ 182 (853)
T 2fsf_A 114 ---------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDN 182 (853)
T ss_dssp ---------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHT
T ss_pred ---------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhh
Confidence 123699999999999999999999999999999999999987533 3344689999999999 7888765
Q ss_pred cC---ccccccceeEEEecccchhc-cCC---------------ChhHHHHHHHHhcccC---------------CCCCc
Q psy16310 945 HF---HLTELYKINYLVIDETDRMI-ESG---------------HFPELKNILDRVTMTE---------------TSQPR 990 (1493)
Q Consensus 945 ~~---~~~~l~~l~~lVlDEah~ll-~~~---------------~~~~l~~il~~l~~~~---------------~~~~~ 990 (1493)
.. ....++++.++|+||||+|+ +.+ |+..+..|+..++... .+..+
T Consensus 183 ~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~r 262 (853)
T 2fsf_A 183 MAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSR 262 (853)
T ss_dssp TCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC------------------------------------------
T ss_pred hhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccc
Confidence 31 11235789999999999998 543 5677888887774210 01245
Q ss_pred eEE------------------------EEeccccc---chHhHHhhhccC--cCcc------------------------
Q psy16310 991 QTF------------------------VFSATLTH---SLKNSLNLKKGQ--SKSK------------------------ 1017 (1493)
Q Consensus 991 q~l------------------------l~SATl~~---~~~~~~~~~~~~--~~~~------------------------ 1017 (1493)
|++ +||||.+. .+...+...... ....
T Consensus 263 qv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~s 342 (853)
T 2fsf_A 263 QVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWS 342 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccc
Confidence 654 89999764 222211100000 0000
Q ss_pred -------------cccCCCchh-----HHHH------------------hHhccCCCcEEeccccccccccceeeEEEec
Q psy16310 1018 -------------KVSKGDPSI-----KRLQ------------------DLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061 (1493)
Q Consensus 1018 -------------~~~~~~~~~-----~~l~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1493)
.+....... ..+. ....+....++.+.........-....+.+.
T Consensus 343 dGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~ 422 (853)
T 2fsf_A 343 DGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMT 422 (853)
T ss_dssp --------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESS
T ss_pred hhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeC
Confidence 000000000 0000 0000000111111111111111111234556
Q ss_pred ccchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhh
Q psy16310 1062 HDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138 (1493)
Q Consensus 1062 ~~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~ 1138 (1493)
..+|...+...+.. .+.++||||+|+..++.|+..|...|+++.++||++.+.+|..+.++|+.| .|+|||++++
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 500 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAG 500 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEeccccc
Confidence 67788888777643 357899999999999999999999999999999999999998899999988 6999999999
Q ss_pred ccccCCCc-------------------------------------cEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEe
Q psy16310 1139 RGLDIPGI-------------------------------------EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181 (1493)
Q Consensus 1139 ~GiDip~v-------------------------------------~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~ 1181 (1493)
||+||+.. .|||+|+.|.|...|+||+|||||.|.+|.+++|+
T Consensus 501 RGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fl 580 (853)
T 2fsf_A 501 RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYL 580 (853)
T ss_dssp SCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEe
Confidence 99999873 69999999999999999999999999999999999
Q ss_pred cCCCH
Q psy16310 1182 ESDEI 1186 (1493)
Q Consensus 1182 ~~~e~ 1186 (1493)
+..|.
T Consensus 581 s~eD~ 585 (853)
T 2fsf_A 581 SMEDA 585 (853)
T ss_dssp ETTSG
T ss_pred cccHH
Confidence 98774
No 44
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.4e-39 Score=424.02 Aligned_cols=344 Identities=22% Similarity=0.289 Sum_probs=258.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++++|++.+.+.+...||.+|+|+|.++++.++..+++++++||||||||++|.+|+++.+..
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------------- 73 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------------- 73 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------------
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------------
Confidence 469999999999999999999999999999999657789999999999999999999999987642
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
.+.+++|++||++||.|+++.++.+. ..++++..++|+...... .+ ..+
T Consensus 74 ---------------------------~~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~--~~-~~~ 122 (715)
T 2va8_A 74 ---------------------------NGGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA--WL-KNY 122 (715)
T ss_dssp ---------------------------SCSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG--GG-GGC
T ss_pred ---------------------------CCCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh--hc-CCC
Confidence 13479999999999999999996543 458899999998754332 12 367
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|+|+|||+|..++..+. ..+.++++|||||||++.++++...+..++.++. +.|++++|||+++. ....
T Consensus 123 ~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~------~~~ii~lSATl~n~-~~~~ 192 (715)
T 2va8_A 123 DIIITTYEKLDSLWRHRP---EWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK------RRNLLALSATISNY-KQIA 192 (715)
T ss_dssp SEEEECHHHHHHHHHHCC---GGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH------TSEEEEEESCCTTH-HHHH
T ss_pred CEEEEcHHHHHHHHhCCh---hHhhccCEEEEechhhcCCcccchHHHHHHHhcc------cCcEEEEcCCCCCH-HHHH
Confidence 999999999999887643 2367899999999999988889889999988874 68999999999752 1111
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCC-CcEEec--ccc------ccccccceeeEEEecccchhhHHHHHHHhCCC
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDL--TEK------IGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~--~~~------~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 1078 (1493)
... +... +... ... +....+ ... ....... .. ...........+... ...++
T Consensus 193 ~~l-~~~~---~~~~------------~r~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~~~ 253 (715)
T 2va8_A 193 KWL-GAEP---VATN------------WRPVPLIEGVIYPERKKKEYNVIFKDNT-TK-KVHGDDAIIAYTLDS-LSKNG 253 (715)
T ss_dssp HHH-TCEE---EECC------------CCSSCEEEEEEEECSSTTEEEEEETTSC-EE-EEESSSHHHHHHHHH-HTTTC
T ss_pred HHh-CCCc---cCCC------------CCCCCceEEEEecCCcccceeeecCcch-hh-hcccchHHHHHHHHH-HhcCC
Confidence 111 1000 0000 000 000000 000 0000000 00 000012222222222 34578
Q ss_pred cEEEEecchhhHHHHHHHHHhcC------------------------------------CCccccccCCCHHHHHHHHHH
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTMLK------------------------------------CSPLPLHASMNQRQRLKNLDR 1122 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~~------------------------------------~~~~~lhg~m~~~~R~~~~~~ 1122 (1493)
++||||+++..++.++..|.... ..+..+||+|++.+|..+++.
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 99999999999999999998642 247889999999999999999
Q ss_pred HhcCCCCeEEeehhhhccccCCCccEEEE----ec-------CCCChhHHHHHHhccCCCC--CCCeEEEEecCCC
Q psy16310 1123 FRDQNNSILLATDVAARGLDIPGIEHVIH----YH-------VPRTSEIYIHRSGRTARAN--NEGLTLVLIESDE 1185 (1493)
Q Consensus 1123 F~~g~~~VLVaTdv~~~GiDip~v~~VI~----~d-------~p~s~~~yiqr~GR~gR~g--~~G~~i~l~~~~e 1185 (1493)
|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 334 f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 334 FRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999999999999999999999 99 8999999999999999988 4899999998765
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=9.6e-41 Score=447.21 Aligned_cols=344 Identities=19% Similarity=0.241 Sum_probs=261.5
Q ss_pred HHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 784 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 784 ~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
..+||. | |+|.++||.++ .|+|++++||||||||+ |++|++..+..
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il-~g~dvlv~apTGSGKTl-~~lp~l~~~~~------------------------------ 97 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRIL-RKESFAATAPTGVGKTS-FGLAMSLFLAL------------------------------ 97 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHH-TTCCEECCCCBTSCSHH-HHHHHHHHHHT------------------------------
T ss_pred HhcCCC-H-HHHHHHHHHHH-hCCCEEEEcCCCCCHHH-HHHHHHHHHhh------------------------------
Confidence 348999 9 99999999555 78999999999999998 99999876632
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCc----EEEEEEcCCCHHHH---HHHhcCCCcEEEECcHH
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV----KVACVVGGMSTEKQ---LRILNKCPHILVATPGR 936 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~----~v~~~~gg~~~~~~---~~~l~~~~~IlV~TP~r 936 (1493)
.++++|||+||++||.|+++.++.++...++ ++..++||.+...+ ...+.. ++|+|+||++
T Consensus 98 -----------~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~ 165 (1054)
T 1gku_B 98 -----------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQF 165 (1054)
T ss_dssp -----------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHH
T ss_pred -----------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHH
Confidence 3457999999999999999999999988888 89999999987663 344455 8999999999
Q ss_pred HHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccC------CCCCceEEEEecccccchHhHHhhh
Q psy16310 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE------TSQPRQTFVFSATLTHSLKNSLNLK 1010 (1493)
Q Consensus 937 l~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~------~~~~~q~ll~SATl~~~~~~~~~~~ 1010 (1493)
|.+++.+ +.++++|||||||+|++ +...+..++..+.... .+...|+++||||++.. .......
T Consensus 166 L~~~l~~-------L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~ 235 (1054)
T 1gku_B 166 LSKHYRE-------LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAEL 235 (1054)
T ss_dssp HHHCSTT-------SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHH
T ss_pred HHHHHHH-------hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHH
Confidence 9887653 55789999999999998 4678888888774321 13467899999999865 2211000
Q ss_pred ccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhH
Q psy16310 1011 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 1090 (1493)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~ 1090 (1493)
...... +.+.........+.+.+. ...+...+..++...++++||||+|+..|
T Consensus 236 ------------------~~~~~~------i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~~~~~LVF~~t~~~a 288 (1054)
T 1gku_B 236 ------------------FRQLLN------FDIGSSRITVRNVEDVAV---NDESISTLSSILEKLGTGGIIYARTGEEA 288 (1054)
T ss_dssp ------------------HHHHHC------CCCSCCEECCCCEEEEEE---SCCCTTTTHHHHTTSCSCEEEEESSHHHH
T ss_pred ------------------hhcceE------EEccCcccCcCCceEEEe---chhHHHHHHHHHhhcCCCEEEEEcCHHHH
Confidence 000111 111111112233444333 35666777777777788999999999999
Q ss_pred HHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEe----ehhhhccccCCCc-cEEEEecCC----------
Q psy16310 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPGI-EHVIHYHVP---------- 1155 (1493)
Q Consensus 1091 ~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVa----Tdv~~~GiDip~v-~~VI~~d~p---------- 1155 (1493)
+.++..|... +.+..+||+|. .+++.|++|+++|||| |+++++|||+|+| ++||+||+|
T Consensus 289 ~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~ 362 (1054)
T 1gku_B 289 EEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDID 362 (1054)
T ss_dssp HHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGG
T ss_pred HHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccc
Confidence 9999999988 99999999983 7889999999999999 9999999999996 999999999
Q ss_pred -------------------------------------------------------------CChhHHHHHHhccCCCCCC
Q psy16310 1156 -------------------------------------------------------------RTSEIYIHRSGRTARANNE 1174 (1493)
Q Consensus 1156 -------------------------------------------------------------~s~~~yiqr~GR~gR~g~~ 1174 (1493)
.+..+|+||+|||||.|..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~ 442 (1054)
T 1gku_B 363 SLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAG 442 (1054)
T ss_dssp GSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETT
T ss_pred cChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCC
Confidence 7899999999999998877
Q ss_pred C--eEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHH
Q psy16310 1175 G--LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217 (1493)
Q Consensus 1175 G--~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ 1217 (1493)
| .+++|+...+...+..+.+.++. ..+...+++...+..+.+
T Consensus 443 g~~~g~~~~~~~d~~~~~~l~~~l~~-~~~~~~~~~~~~~~~l~~ 486 (1054)
T 1gku_B 443 GLTKGASFLLEDDSELLSAFIERAKL-YDIEFKSIDEVDFEKLSR 486 (1054)
T ss_dssp EECCEEEEEECSCHHHHHHHHHHHHT-TSSCCCBCSCCCHHHHHH
T ss_pred CCceEEEEEEecCHHHHHHHHHHHhh-ccCccccCCcCCHHHHHH
Confidence 6 48888888888888888888775 323333343333344433
No 46
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.2e-40 Score=422.04 Aligned_cols=357 Identities=21% Similarity=0.205 Sum_probs=202.6
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
++..+|||+|.++|+.++ .++|+++++|||||||++|++|+++.+....
T Consensus 3 ~~~~~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------------------------------ 51 (556)
T 4a2p_A 3 METKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMP------------------------------ 51 (556)
T ss_dssp -----CCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------------------------------
T ss_pred CCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHHhCc------------------------------
Confidence 456789999999999654 6789999999999999999999998875421
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~ 945 (1493)
...+.++|||+||++|+.|+++.++.++...++++..++|+.....+...+..+++|+|+||++|.+++..+.
T Consensus 52 -------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~ 124 (556)
T 4a2p_A 52 -------AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT 124 (556)
T ss_dssp -------SSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS
T ss_pred -------ccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc
Confidence 1225679999999999999999999998888899999999987776666666678999999999999998765
Q ss_pred CccccccceeEEEecccchhccCCChhHHH-HHHHHhcccCCCCCceEEEEecccccch----HhHHh------hhccCc
Q psy16310 946 FHLTELYKINYLVIDETDRMIESGHFPELK-NILDRVTMTETSQPRQTFVFSATLTHSL----KNSLN------LKKGQS 1014 (1493)
Q Consensus 946 ~~~~~l~~l~~lVlDEah~ll~~~~~~~l~-~il~~l~~~~~~~~~q~ll~SATl~~~~----~~~~~------~~~~~~ 1014 (1493)
. ..+.++++|||||||++.+++.+..+. .++... .....+..+++++|||++... ..++. ......
T Consensus 125 ~--~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~ 201 (556)
T 4a2p_A 125 L--TSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK-FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ 201 (556)
T ss_dssp C--CCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH-HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCS
T ss_pred c--cccccCCEEEEECCcccCCcchHHHHHHHHHHhh-hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCe
Confidence 3 245678999999999998877544332 111111 111235689999999996421 11110 000000
Q ss_pred CcccccCCCchhHHHHhHhccCCCcEEecccccc----------------------------------ccc---------
Q psy16310 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG----------------------------------ITK--------- 1051 (1493)
Q Consensus 1015 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------------~~~--------- 1051 (1493)
.+.........+................... ...
T Consensus 202 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 278 (556)
T 4a2p_A 202 ---AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVV 278 (556)
T ss_dssp ---EEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHH
T ss_pred ---EecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHH
Confidence 0000000111111111111100000000000 000
Q ss_pred --------------------------------------------------ccee--------------------------
Q psy16310 1052 --------------------------------------------------TLTE-------------------------- 1055 (1493)
Q Consensus 1052 --------------------------------------------------~~~~-------------------------- 1055 (1493)
.+..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (556)
T 4a2p_A 279 TQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEP 358 (556)
T ss_dssp HHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHH
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHH
Confidence 0000
Q ss_pred -----eEEEecccchhhHHHHHHH-----hCCCcEEEEecchhhHHHHHHHHHhc------------CCCccccccCCCH
Q psy16310 1056 -----SKILCKHDEKDSYLYYFIL-----QHPGRTLVFCNSISSVKRLTQLLTML------------KCSPLPLHASMNQ 1113 (1493)
Q Consensus 1056 -----~~~~~~~~~k~~~l~~~l~-----~~~~~~IVF~~s~~~~~~l~~~L~~~------------~~~~~~lhg~m~~ 1113 (1493)
.........|...+..++. ..+.++||||+++.+++.++..|... |.....+||+|++
T Consensus 359 ~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 438 (556)
T 4a2p_A 359 ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTL 438 (556)
T ss_dssp HHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------
T ss_pred HhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCH
Confidence 0000012345556666664 34689999999999999999999875 5566677889999
Q ss_pred HHHHHHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHH
Q psy16310 1114 RQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188 (1493)
Q Consensus 1114 ~~R~~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~ 1188 (1493)
.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|.++..|+||+|| ||. +.|.+++|+++.+...
T Consensus 439 ~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 439 PSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp ---------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred HHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 999999999999 999999999999999999999999999999999999999999 999 8999999998876543
No 47
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=8.9e-40 Score=427.59 Aligned_cols=341 Identities=18% Similarity=0.213 Sum_probs=263.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
+|++++|++.+.+.+...||..|+|+|.++++.++..+++++++||||||||++|.+|+++.+...
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------------- 67 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------------- 67 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------------
Confidence 589999999999999999999999999999986477899999999999999999999999877421
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
+.+++|++||++||.|+++.++.+. ..++++..++|+....... ...++
T Consensus 68 ---------------------------~~~~l~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~~ 116 (720)
T 2zj8_A 68 ---------------------------GGKAVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDEW---LGKYD 116 (720)
T ss_dssp ---------------------------CSEEEEECSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCGG---GGGCS
T ss_pred ---------------------------CCEEEEEcCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCccccc---cCCCC
Confidence 3479999999999999999997554 3578999999976543321 23579
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+|+||++|..++.... ..+.++++||+||||++.++++...+..++..+. .+.|++++|||+++. .....
T Consensus 117 Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-----~~~~ii~lSATl~n~-~~~~~ 187 (720)
T 2zj8_A 117 IIIATAEKFDSLLRHGS---SWIKDVKILVADEIHLIGSRDRGATLEVILAHML-----GKAQIIGLSATIGNP-EELAE 187 (720)
T ss_dssp EEEECHHHHHHHHHHTC---TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB-----TTBEEEEEECCCSCH-HHHHH
T ss_pred EEEECHHHHHHHHHcCh---hhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh-----cCCeEEEEcCCcCCH-HHHHH
Confidence 99999999998887643 2367899999999999999899999999999885 278999999999852 11111
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec-----ccchhhHHHHHHHhCCCcEEEE
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-----HDEKDSYLYYFILQHPGRTLVF 1083 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~k~~~l~~~l~~~~~~~IVF 1083 (1493)
. .+.. .+.. .. .+..+... ..... ...... .......+... ...++++|||
T Consensus 188 ~-l~~~---~~~~------------~~-rp~~l~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LVF 243 (720)
T 2zj8_A 188 W-LNAE---LIVS------------DW-RPVKLRRG--VFYQG----FVTWEDGSIDRFSSWEELVYDA-IRKKKGALIF 243 (720)
T ss_dssp H-TTEE---EEEC------------CC-CSSEEEEE--EEETT----EEEETTSCEEECSSTTHHHHHH-HHTTCCEEEE
T ss_pred H-hCCc---ccCC------------CC-CCCcceEE--EEeCC----eeeccccchhhhhHHHHHHHHH-HhCCCCEEEE
Confidence 1 1100 0000 00 00000000 00000 000000 12233333333 3457899999
Q ss_pred ecchhhHHHHHHHHHhc---------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCCe
Q psy16310 1084 CNSISSVKRLTQLLTML---------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130 (1493)
Q Consensus 1084 ~~s~~~~~~l~~~L~~~---------------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~V 1130 (1493)
|++++.++.++..|... ..++..|||+|++.+|..+++.|++|.++|
T Consensus 244 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~v 323 (720)
T 2zj8_A 244 VNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKA 323 (720)
T ss_dssp CSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCE
T ss_pred ecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeE
Confidence 99999999999998753 124888999999999999999999999999
Q ss_pred EEeehhhhccccCCCccEEEE----ec----CCCChhHHHHHHhccCCCC--CCCeEEEEecCCCHH
Q psy16310 1131 LLATDVAARGLDIPGIEHVIH----YH----VPRTSEIYIHRSGRTARAN--NEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1131 LVaTdv~~~GiDip~v~~VI~----~d----~p~s~~~yiqr~GR~gR~g--~~G~~i~l~~~~e~~ 1187 (1493)
||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+..
T Consensus 324 lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 324 VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 999999999999999999998 77 6899999999999999998 579999999988743
No 48
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2.8e-39 Score=400.97 Aligned_cols=352 Identities=16% Similarity=0.199 Sum_probs=256.0
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
.+|+ .|||+|..++|. +..|+ |++++||+|||++|.+|++...+.
T Consensus 107 ~lG~-rP~~VQ~~~ip~-Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~------------------------------- 151 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAA-LHLGN--VAEMKTGEGKTLTCVLPAYLNALA------------------------------- 151 (922)
T ss_dssp HHSC-CCCHHHHHHHHH-HHTTE--EEECCTTSCHHHHTHHHHHHHHTT-------------------------------
T ss_pred HcCC-CCCHHHHHHHHh-HhcCC--EEEecCCCccHHHHHHHHHHHHHh-------------------------------
Confidence 3698 999999999994 55665 999999999999999999754322
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHh
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQL 943 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~ 943 (1493)
+..++||+||++||.|+++.+..++.++++++++++||.+..... +..++||+||||++| .++|..
T Consensus 152 -----------g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD 218 (922)
T 1nkt_A 152 -----------GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRD 218 (922)
T ss_dssp -----------TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHH
T ss_pred -----------CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHh
Confidence 235999999999999999999999999999999999999865443 334689999999999 788876
Q ss_pred CcC---ccccccceeEEEecccchhc-cC---------------CChhHHHHHHHHhccc----CCCCCceEE-------
Q psy16310 944 GHF---HLTELYKINYLVIDETDRMI-ES---------------GHFPELKNILDRVTMT----ETSQPRQTF------- 993 (1493)
Q Consensus 944 ~~~---~~~~l~~l~~lVlDEah~ll-~~---------------~~~~~l~~il~~l~~~----~~~~~~q~l------- 993 (1493)
+.. ....++.+.++||||||+|+ +. +|+..+..++..++.. -.+..+|++
T Consensus 219 ~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~ 298 (922)
T 1nkt_A 219 NMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVE 298 (922)
T ss_dssp TTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHH
T ss_pred hhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHH
Confidence 521 12345689999999999998 43 4778888999888410 012568998
Q ss_pred ----------EEeccccc---chHhHHhhh--ccCcC---------------cccccCC---CchhHH-HH--hHhccC-
Q psy16310 994 ----------VFSATLTH---SLKNSLNLK--KGQSK---------------SKKVSKG---DPSIKR-LQ--DLLNIK- 1036 (1493)
Q Consensus 994 ----------l~SATl~~---~~~~~~~~~--~~~~~---------------~~~~~~~---~~~~~~-l~--~~~~~~- 1036 (1493)
+||||.+. .+...+... +.... ...+..+ ...+.. +. ..+.+.
T Consensus 299 ~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~ 378 (922)
T 1nkt_A 299 FVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKA 378 (922)
T ss_dssp HHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCC
T ss_pred HHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccc
Confidence 99999874 333222110 00000 0000000 000000 00 000010
Q ss_pred --------------------------------------CCcEEeccccccccccceeeEEEecccchhhHHHHHHHh---
Q psy16310 1037 --------------------------------------SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ--- 1075 (1493)
Q Consensus 1037 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--- 1075 (1493)
...++.+.........-....+.+...+|...+...+..
T Consensus 379 e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~ 458 (922)
T 1nkt_A 379 ENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA 458 (922)
T ss_dssp CEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH
T ss_pred cccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh
Confidence 111111111111111111123455566777777776643
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCc---------
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI--------- 1146 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v--------- 1146 (1493)
.+.++||||+|+..++.|+..|...|+++.++||++.++++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 459 ~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~ 536 (922)
T 1nkt_A 459 KGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQ 536 (922)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHH
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHH
Confidence 466899999999999999999999999999999999888888888888877 699999999999999975
Q ss_pred -------------------------------------------cEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecC
Q psy16310 1147 -------------------------------------------EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183 (1493)
Q Consensus 1147 -------------------------------------------~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~ 1183 (1493)
.|||+|+.|.|...|+||+|||||.|.+|.+++|++.
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSl 616 (922)
T 1nkt_A 537 RLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSL 616 (922)
T ss_dssp HHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEET
T ss_pred HHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEech
Confidence 5999999999999999999999999999999999998
Q ss_pred CCH
Q psy16310 1184 DEI 1186 (1493)
Q Consensus 1184 ~e~ 1186 (1493)
.|.
T Consensus 617 eD~ 619 (922)
T 1nkt_A 617 GDE 619 (922)
T ss_dssp TSH
T ss_pred hHH
Confidence 775
No 49
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.4e-40 Score=430.29 Aligned_cols=342 Identities=16% Similarity=0.196 Sum_probs=257.8
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 769 EWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 769 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
+|++++ |++.+.+.+...||.+|+|+|.++++. +..+++++++||||||||++|.+|+++.+..
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------- 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEK-VFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------- 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHH-HTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHH-HhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------------
Confidence 477888 999999999999999999999999985 6678999999999999999999999987632
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
+.+++|++||++||.|+++.++.+. ..++++..++|+...... ....
T Consensus 68 -----------------------------~~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~ 114 (702)
T 2p6r_A 68 -----------------------------GGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGD 114 (702)
T ss_dssp -----------------------------TCCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTT
T ss_pred -----------------------------CCcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccC
Confidence 2469999999999999999996443 458999999998654322 1236
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+|||+|..++..+. ..+.++++||+||||++.++++...+..++..+... .++.|++++|||+++. ...
T Consensus 115 ~~Iiv~Tpe~l~~~l~~~~---~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~--~~~~~ii~lSATl~n~-~~~ 188 (702)
T 2p6r_A 115 CDIIVTTSEKADSLIRNRA---SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM--NKALRVIGLSATAPNV-TEI 188 (702)
T ss_dssp CSEEEEEHHHHHHHHHTTC---SGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH--CTTCEEEEEECCCTTH-HHH
T ss_pred CCEEEECHHHHHHHHHcCh---hHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc--CcCceEEEECCCcCCH-HHH
Confidence 7999999999999887643 236789999999999999989988888888877432 3568999999999852 222
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCC-CcEEeccccccccccceeeEEEe-----cccchhhHHHHHHHhCCCcE
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILC-----KHDEKDSYLYYFILQHPGRT 1080 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~k~~~l~~~l~~~~~~~ 1080 (1493)
... .+... +.. .... +....+.. .. ...+... ........+... ...++++
T Consensus 189 ~~~-l~~~~---~~~------------~~r~~~l~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 245 (702)
T 2p6r_A 189 AEW-LDADY---YVS------------DWRPVPLVEGVLC-----EG-TLELFDGAFSTSRRVKFEELVEEC-VAENGGV 245 (702)
T ss_dssp HHH-TTCEE---EEC------------CCCSSCEEEEEEC-----SS-EEEEEETTEEEEEECCHHHHHHHH-HHTTCCE
T ss_pred HHH-hCCCc---ccC------------CCCCccceEEEee-----CC-eeeccCcchhhhhhhhHHHHHHHH-HhcCCCE
Confidence 111 11000 000 0000 00000000 00 0000000 000122333333 3467899
Q ss_pred EEEecchhhHHHHHHHHHhc------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCCe
Q psy16310 1081 LVFCNSISSVKRLTQLLTML------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130 (1493)
Q Consensus 1081 IVF~~s~~~~~~l~~~L~~~------------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~V 1130 (1493)
||||++++.++.++..|... +..+..+||+|++.+|..+++.|++|.++|
T Consensus 246 LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~v 325 (702)
T 2p6r_A 246 LVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKV 325 (702)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCE
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeE
Confidence 99999999999999988753 246888999999999999999999999999
Q ss_pred EEeehhhhccccCCCccEEEE----ec---CCCChhHHHHHHhccCCCC--CCCeEEEEecCCCH
Q psy16310 1131 LLATDVAARGLDIPGIEHVIH----YH---VPRTSEIYIHRSGRTARAN--NEGLTLVLIESDEI 1186 (1493)
Q Consensus 1131 LVaTdv~~~GiDip~v~~VI~----~d---~p~s~~~yiqr~GR~gR~g--~~G~~i~l~~~~e~ 1186 (1493)
||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+.
T Consensus 326 lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 326 VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 999999999999999999998 76 7899999999999999998 58999999988773
No 50
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.4e-40 Score=432.54 Aligned_cols=368 Identities=17% Similarity=0.154 Sum_probs=219.8
Q ss_pred HHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHH
Q psy16310 780 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 859 (1493)
Q Consensus 780 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (1493)
..++..+||..|+|+|.++++.++ .|+|+|+++|||+|||++|++|+++.+....
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l-~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~------------------------ 57 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFP------------------------ 57 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------------------------
T ss_pred CCcccccCCCCccHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHHHHhCc------------------------
Confidence 356778999999999999999554 6789999999999999999999998774321
Q ss_pred HHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHH
Q psy16310 860 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939 (1493)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~ 939 (1493)
...+.++|||+||++|+.|+++.+++++...++++..++||.....+...+..+++|+|+||++|.+
T Consensus 58 -------------~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~ 124 (696)
T 2ykg_A 58 -------------QGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124 (696)
T ss_dssp -------------TTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHH
T ss_pred -------------cCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHH
Confidence 1223579999999999999999999998888899999999987655555555578999999999999
Q ss_pred HHHhCcCccccccceeEEEecccchhccCCChhHHH-HHHHHhcccCCCCCceEEEEeccccc-------chHhHHhhhc
Q psy16310 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELK-NILDRVTMTETSQPRQTFVFSATLTH-------SLKNSLNLKK 1011 (1493)
Q Consensus 940 ~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~-~il~~l~~~~~~~~~q~ll~SATl~~-------~~~~~~~~~~ 1011 (1493)
.+..+.. ..+.++++|||||||++.....+..+. .++............+++++|||+.. .....+....
T Consensus 125 ~l~~~~~--~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~ 202 (696)
T 2ykg_A 125 NLKKGTI--PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLC 202 (696)
T ss_dssp HHHTTSS--CCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHH
T ss_pred HHhcCcc--cccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHH
Confidence 9987653 135688999999999988654222211 12221111122356799999999972 1111111000
Q ss_pred cCcCccccc------------------------C-CCc-----------hhHHHHhHhccCCCcEEe-------------
Q psy16310 1012 GQSKSKKVS------------------------K-GDP-----------SIKRLQDLLNIKSPKIVD------------- 1042 (1493)
Q Consensus 1012 ~~~~~~~~~------------------------~-~~~-----------~~~~l~~~~~~~~~~~~~------------- 1042 (1493)
.......+. . ... .+..+...+. ..+..+.
T Consensus 203 ~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 281 (696)
T 2ykg_A 203 ASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC-KDLENLSQIQNREFGTQKYE 281 (696)
T ss_dssp HHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHS-TTGGGSSSCCSCCSSSHHHH
T ss_pred HhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHH-HHHHHhhccccccccchhHH
Confidence 000000000 0 000 0000000000 0000000
Q ss_pred --------------cccc-----------------------------------------------ccccccceeeEEE--
Q psy16310 1043 --------------LTEK-----------------------------------------------IGITKTLTESKIL-- 1059 (1493)
Q Consensus 1043 --------------~~~~-----------------------------------------------~~~~~~~~~~~~~-- 1059 (1493)
.... ......+.+.+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (696)
T 2ykg_A 282 QWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRF 361 (696)
T ss_dssp HHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 0000 0000000000000
Q ss_pred -------------e-cccchhhHHHHHHHhC-----CCcEEEEecchhhHHHHHHHHHhcC----CCcccc--------c
Q psy16310 1060 -------------C-KHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTMLK----CSPLPL--------H 1108 (1493)
Q Consensus 1060 -------------~-~~~~k~~~l~~~l~~~-----~~~~IVF~~s~~~~~~l~~~L~~~~----~~~~~l--------h 1108 (1493)
+ ....+...+..++... ++++||||+++..++.++..|...+ +.+..+ |
T Consensus 362 ~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h 441 (696)
T 2ykg_A 362 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 441 (696)
T ss_dssp HTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC----------
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccc
Confidence 0 1345666666666543 5789999999999999999999987 788777 5
Q ss_pred cCCCHHHHHHHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHH
Q psy16310 1109 ASMNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1109 g~m~~~~R~~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~ 1187 (1493)
|+|++.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|.+..+|+||+|| ||. +.|.+++|++..+..
T Consensus 442 ~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 442 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVI 519 (696)
T ss_dssp -------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHH
Confidence 69999999999999998 999999999999999999999999999999999999999999 998 789999999887764
Q ss_pred HHH
Q psy16310 1188 LYI 1190 (1493)
Q Consensus 1188 ~~~ 1190 (1493)
...
T Consensus 520 ~~~ 522 (696)
T 2ykg_A 520 EKE 522 (696)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 51
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.1e-40 Score=420.22 Aligned_cols=388 Identities=20% Similarity=0.192 Sum_probs=208.0
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
+.-.|+|+|.++++. +..++|+|+++|||||||++|++|+++.+....
T Consensus 4 ~~~~~~~~Q~~~i~~-~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------------------------------- 51 (556)
T 4a2p_A 4 ETKKARSYQIELAQP-AINGKNALICAPTGSGKTFVSILICEHHFQNMP------------------------------- 51 (556)
T ss_dssp ----CCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------------------------------
T ss_pred CCCCCCHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-------------------------------
Confidence 445799999999985 556789999999999999999999998875311
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
...+.++|||+||++|+.|+++.+..++...++++..++|+.....++..+..+++|+|+||++|.+++..+..
T Consensus 52 ------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~ 125 (556)
T 4a2p_A 52 ------AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL 125 (556)
T ss_dssp ------SSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSC
T ss_pred ------ccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcc
Confidence 12256799999999999999999999988778999999999887777777767789999999999999987654
Q ss_pred cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
..+.++++|||||||++.+++++..+ +..+.... .....+..++++||||
T Consensus 126 --~~~~~~~~vViDEah~~~~~~~~~~~---~~~~~~~~-------------------------~~~~~~~~~~l~lSAT 175 (556)
T 4a2p_A 126 --TSLSIFTLMIFDECHNTTGNHPYNVL---MTRYLEQK-------------------------FNSASQLPQILGLTAS 175 (556)
T ss_dssp --CCSTTCSEEEEETGGGCSTTSHHHHH---HHHHHHHH-------------------------HCC---CCEEEEEESC
T ss_pred --cccccCCEEEEECCcccCCcchHHHH---HHHHHHhh-------------------------hcccCCCCeEEEEeCC
Confidence 13558899999999999877653333 22111000 0001345799999999
Q ss_pred cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCC
Q psy16310 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489 (1493)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1493)
++..-...+. .....+..+......... ................+.
T Consensus 176 ~~~~~~~~~~---------------~~~~~i~~l~~~l~~~~~-------------------~~~~~~~~~~~~~~~~~~ 221 (556)
T 4a2p_A 176 VGVGNAKNIE---------------ETIEHICSLCSYLDIQAI-------------------STVRENIQELQRFMNKPE 221 (556)
T ss_dssp CCCTTCSSHH---------------HHHHHHHHHHHHHTCSEE-------------------ECCCTTHHHHHHHTCCCC
T ss_pred cccCchhhHH---------------HHHHHHHHHHHhcCCeEe-------------------cchhcchHHHHhcCCCCc
Confidence 9642110000 000000000000000000 000000000111122222
Q ss_pred cchh------------------hHHHhhhhccCC-------------------cccccccc---cccc------------
Q psy16310 490 RTLC------------------EEIQDLLNIKSP-------------------KIVDLTEK---IGIT------------ 517 (1493)
Q Consensus 490 ~~~~------------------~~~~~~~~~~~~-------------------~~~~~~~~---~~~~------------ 517 (1493)
.... ..+......... .+..+... ....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (556)
T 4a2p_A 222 IDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 301 (556)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHH
T ss_pred eEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 1100 000000000000 00000000 0000
Q ss_pred -----------------------c---ccc-------------------------------ccccccccCchhhHHHHHH
Q psy16310 518 -----------------------K---TLT-------------------------------ESKILCKHDEKDSYLYYFI 540 (1493)
Q Consensus 518 -----------------------~---~~~-------------------------------~~~~~~~~~~k~~~l~~~l 540 (1493)
. .+. ........+.|...|..++
T Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l 381 (556)
T 4a2p_A 302 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCIL 381 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHH
Confidence 0 000 0000011355777777777
Q ss_pred h-----hCCCcEEEEecchhhHHHHHHHHHhc------------CCCccccccCCCHHHHHHHHHHHhc-CCCeEEEEec
Q psy16310 541 L-----QHPGRTLVFCNSISSVKRLTQLLTML------------KCSPLPLHASMNQRQRLKNLDRFRD-QNNSILLATD 602 (1493)
Q Consensus 541 ~-----~~~~~~IIF~~s~~~a~~L~~~L~~~------------~~~~~~lhg~~~~~~R~~vl~~Fr~-g~~~VLVaTd 602 (1493)
. ..+.++||||+++.++..++..|... |.....+||+|++.+|..+++.|++ |+++|||||+
T Consensus 382 ~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~ 461 (556)
T 4a2p_A 382 DDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS 461 (556)
T ss_dssp HHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC
T ss_pred HHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC
Confidence 5 34689999999999999999999765 5556677889999999999999999 9999999999
Q ss_pred hhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 603 v~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
++++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.|++|+++.+......++.
T Consensus 462 ~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~~~ 518 (556)
T 4a2p_A 462 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENEKCNR 518 (556)
T ss_dssp -----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHHHHHHH
T ss_pred chhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHHHHhhH
Confidence 99999999999999999999999999999999 998 7999999999988765544443
No 52
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.8e-39 Score=433.75 Aligned_cols=389 Identities=17% Similarity=0.186 Sum_probs=283.8
Q ss_pred cCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhcc---CC--cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 772 KFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLA---RK--DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 772 ~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~---~~--dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
.+++++.+.+.+.. ++|+ |||+|.++|+.++.. ++ |+++++|||||||++|+++++..+.
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------------- 650 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------------- 650 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-------------
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-------------
Confidence 45677778877754 5775 799999999976652 55 9999999999999999999886542
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHH---HH
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL---RI 922 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~---~~ 922 (1493)
.+.+++||+||++||.|+++.+.......++++..++|+.+...+. ..
T Consensus 651 -----------------------------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~ 701 (1151)
T 2eyq_A 651 -----------------------------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAE 701 (1151)
T ss_dssp -----------------------------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHH
T ss_pred -----------------------------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHH
Confidence 3358999999999999999999998888889999999887765543 33
Q ss_pred hcC-CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 923 LNK-CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 923 l~~-~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
+.. .++|+|+||+.|. . . ..+.++++|||||||++ ......++..+. ...++++||||+++
T Consensus 702 l~~g~~dIvV~T~~ll~----~-~---~~~~~l~lvIiDEaH~~-----g~~~~~~l~~l~-----~~~~vl~lSATp~p 763 (1151)
T 2eyq_A 702 VAEGKIDILIGTHKLLQ----S-D---VKFKDLGLLIVDEEHRF-----GVRHKERIKAMR-----ANVDILTLTATPIP 763 (1151)
T ss_dssp HHTTCCSEEEECTHHHH----S-C---CCCSSEEEEEEESGGGS-----CHHHHHHHHHHH-----TTSEEEEEESSCCC
T ss_pred HhcCCCCEEEECHHHHh----C-C---ccccccceEEEechHhc-----ChHHHHHHHHhc-----CCCCEEEEcCCCCh
Confidence 333 5899999998763 1 2 24678999999999994 334555666553 56899999999875
Q ss_pred chHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHH--HhCCCc
Q psy16310 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI--LQHPGR 1079 (1493)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l--~~~~~~ 1079 (1493)
......... +.....+... ......+...... . ........++ ...+++
T Consensus 764 ~~l~~~~~~------------------------~~~~~~i~~~--~~~r~~i~~~~~~-~--~~~~i~~~il~~l~~g~q 814 (1151)
T 2eyq_A 764 RTLNMAMSG------------------------MRDLSIIATP--PARRLAVKTFVRE-Y--DSMVVREAILREILRGGQ 814 (1151)
T ss_dssp HHHHHHHTT------------------------TSEEEECCCC--CCBCBCEEEEEEE-C--CHHHHHHHHHHHHTTTCE
T ss_pred hhHHHHHhc------------------------CCCceEEecC--CCCccccEEEEec-C--CHHHHHHHHHHHHhcCCe
Confidence 543322110 0111111100 0001111111111 1 1111111121 235789
Q ss_pred EEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecC-CC
Q psy16310 1080 TLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV-PR 1156 (1493)
Q Consensus 1080 ~IVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~-p~ 1156 (1493)
++|||+++..++.++..|... +..+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||+++. +.
T Consensus 815 vlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~ 894 (1151)
T 2eyq_A 815 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 894 (1151)
T ss_dssp EEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSS
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCC
Confidence 999999999999999999987 788999999999999999999999999999999999999999999999999998 46
Q ss_pred ChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy16310 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR 1236 (1493)
Q Consensus 1157 s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 1236 (1493)
+..+|+||+||+||.|+.|.|++++.+.+.. .....+++........+++++....
T Consensus 895 ~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~~l------------------------~~~~~~rl~~i~~~~~lg~gf~ia~ 950 (1151)
T 2eyq_A 895 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM------------------------TTDAQKRLEAIASLEDLGAGFALAT 950 (1151)
T ss_dssp CHHHHHHHHTTCCBTTBCEEEEEEECCGGGS------------------------CHHHHHHHHHHTTCCSBSHHHHHHH
T ss_pred CHHHHHHHHhccCcCCCceEEEEEECCcccc------------------------CHHHHHHHHHHHHhhccCCcchHHH
Confidence 8999999999999999999999998654310 0122233333333322333444445
Q ss_pred CchHHHHHhhhhhhcccccchhccccCChhHHHHHHHHHHhh
Q psy16310 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1278 (1493)
Q Consensus 1237 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1278 (1493)
.+..++++|...+..|+| .+...+|+.|.+++++..++
T Consensus 951 ~dl~irg~g~~lg~~q~g----~i~~~~~~~~~~~l~~a~~~ 988 (1151)
T 2eyq_A 951 HDLEIRGAGELLGEEQSG----SMETIGFSLYMELLENAVDA 988 (1151)
T ss_dssp HHHHHHHHHHHHCHHHHH----HHHHHCHHHHHHHHHHHHHH
T ss_pred HHhccCCCcccCCccccC----ChhhccHHHHHHHHHHHHHH
Confidence 566788889988888988 78888999999998876553
No 53
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=8.2e-40 Score=418.30 Aligned_cols=359 Identities=17% Similarity=0.173 Sum_probs=228.7
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
.+|+|+|.++++.+ ..|+|+++++|||||||++|++|+++.+....
T Consensus 3 ~~~~~~Q~~~i~~~-~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~--------------------------------- 48 (555)
T 3tbk_A 3 LKPRNYQLELALPA-KKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--------------------------------- 48 (555)
T ss_dssp CCCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---------------------------------
T ss_pred CCCcHHHHHHHHHH-hCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---------------------------------
Confidence 47999999999955 47789999999999999999999998875421
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcc
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~ 948 (1493)
...+.++|||+||++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|.+++..+..
T Consensus 49 ----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-- 122 (555)
T 3tbk_A 49 ----CGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAI-- 122 (555)
T ss_dssp ----SSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSS--
T ss_pred ----cCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcc--
Confidence 12356799999999999999999999988889999999999876665555556789999999999999987653
Q ss_pred ccccceeEEEecccchhccCCChhHHH-HHHHHhcccCCCCCceEEEEecccccch-------HhHH-hhhccCcCcccc
Q psy16310 949 TELYKINYLVIDETDRMIESGHFPELK-NILDRVTMTETSQPRQTFVFSATLTHSL-------KNSL-NLKKGQSKSKKV 1019 (1493)
Q Consensus 949 ~~l~~l~~lVlDEah~ll~~~~~~~l~-~il~~l~~~~~~~~~q~ll~SATl~~~~-------~~~~-~~~~~~~~~~~~ 1019 (1493)
..+.++++|||||||++...+.+..+. ..+............+++++|||++... ...+ ....... ...+
T Consensus 123 ~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~-~~~~ 201 (555)
T 3tbk_A 123 PSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD-ASVI 201 (555)
T ss_dssp CCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT-CSEE
T ss_pred cccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC-Ceee
Confidence 246678999999999998765332222 2222221222235679999999996531 1100 0000000 0000
Q ss_pred cCCCchhHHHHhHhccCCCcEEeccccc-----------------------------------cccc-------------
Q psy16310 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKI-----------------------------------GITK------------- 1051 (1493)
Q Consensus 1020 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------------------------~~~~------------- 1051 (1493)
.........+.................. ....
T Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 281 (555)
T 3tbk_A 202 ATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKA 281 (555)
T ss_dssp ECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHH
T ss_pred eccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHH
Confidence 0000011111111100000000000000 0000
Q ss_pred -------------------------------------------------c----c-----------------------ee
Q psy16310 1052 -------------------------------------------------T----L-----------------------TE 1055 (1493)
Q Consensus 1052 -------------------------------------------------~----~-----------------------~~ 1055 (1493)
. . ..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (555)
T 3tbk_A 282 CSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEK 361 (555)
T ss_dssp HHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHH
T ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhh
Confidence 0 0 00
Q ss_pred e-EEEecccchhhHHHHHHHh-----CCCcEEEEecchhhHHHHHHHHHhcC------------CCccccccCCCHHHHH
Q psy16310 1056 S-KILCKHDEKDSYLYYFILQ-----HPGRTLVFCNSISSVKRLTQLLTMLK------------CSPLPLHASMNQRQRL 1117 (1493)
Q Consensus 1056 ~-~~~~~~~~k~~~l~~~l~~-----~~~~~IVF~~s~~~~~~l~~~L~~~~------------~~~~~lhg~m~~~~R~ 1117 (1493)
. ........|...+..++.. .++++||||+++.+++.++..|...+ .....+||+|++.+|.
T Consensus 362 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~ 441 (555)
T 3tbk_A 362 VSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQK 441 (555)
T ss_dssp HHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------
T ss_pred hccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHH
Confidence 0 0000123455566655543 35899999999999999999998763 4555677899999999
Q ss_pred HHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHH
Q psy16310 1118 KNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190 (1493)
Q Consensus 1118 ~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~ 1190 (1493)
.++++|++ |+++|||||+++++|||+|+|++||+||+|.++..|+||+|| ||. +.|.+++|+++.+.....
T Consensus 442 ~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 442 CVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp ----------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred HHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 99999999 999999999999999999999999999999999999999999 998 899999999887765443
No 54
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.5e-39 Score=425.41 Aligned_cols=344 Identities=19% Similarity=0.233 Sum_probs=260.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
+|++++|++.+.+.+...||..|+|+|.++++.++..++|++++||||||||++|.+|+++.+..
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------------- 66 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------------- 66 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH---------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------------
Confidence 48899999999999999999999999999999647789999999999999999999999987742
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
.+.+++|++||++||.|+++.+..+.. .++++..++|+...... ....++
T Consensus 67 --------------------------~~~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~ 116 (720)
T 2zj8_A 67 --------------------------QGGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYD 116 (720)
T ss_dssp --------------------------HCSEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCS
T ss_pred --------------------------CCCEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCC
Confidence 135799999999999999999965543 48999999998654432 124579
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||++|..++.+... .+.++++|||||||++.++++...++.++.++.
T Consensus 117 Iiv~Tpe~l~~~~~~~~~---~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-------------------------- 167 (720)
T 2zj8_A 117 IIIATAEKFDSLLRHGSS---WIKDVKILVADEIHLIGSRDRGATLEVILAHML-------------------------- 167 (720)
T ss_dssp EEEECHHHHHHHHHHTCT---TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB--------------------------
T ss_pred EEEECHHHHHHHHHcChh---hhhcCCEEEEECCcccCCCcccHHHHHHHHHhh--------------------------
Confidence 999999999988876432 356899999999999988899999999988773
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
...|++++|||+++. ..+ ..++... ... .... +..+.... ..
T Consensus 168 -------~~~~ii~lSATl~n~-~~~-----------------------~~~l~~~---~~~--~~~r-p~~l~~~~-~~ 209 (720)
T 2zj8_A 168 -------GKAQIIGLSATIGNP-EEL-----------------------AEWLNAE---LIV--SDWR-PVKLRRGV-FY 209 (720)
T ss_dssp -------TTBEEEEEECCCSCH-HHH-----------------------HHHTTEE---EEE--CCCC-SSEEEEEE-EE
T ss_pred -------cCCeEEEEcCCcCCH-HHH-----------------------HHHhCCc---ccC--CCCC-CCcceEEE-Ee
Confidence 146999999999752 111 1121100 000 0000 00000000 00
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEe
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 551 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~ 551 (1493)
.+.+ ....... .........+...+ ..++++||||
T Consensus 210 --------------------------------~~~~-------~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~LVF~ 244 (720)
T 2zj8_A 210 --------------------------------QGFV-------TWEDGSI-----DRFSSWEELVYDAI-RKKKGALIFV 244 (720)
T ss_dssp --------------------------------TTEE-------EETTSCE-----EECSSTTHHHHHHH-HTTCCEEEEC
T ss_pred --------------------------------CCee-------eccccch-----hhhhHHHHHHHHHH-hCCCCEEEEe
Confidence 0000 0000000 00122333444433 3568999999
Q ss_pred cchhhHHHHHHHHHhc---------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEE
Q psy16310 552 NSISSVKRLTQLLTML---------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598 (1493)
Q Consensus 552 ~s~~~a~~L~~~L~~~---------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VL 598 (1493)
+++..++.++..|... ..++..+||+|++.+|..+++.|++|.++||
T Consensus 245 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vl 324 (720)
T 2zj8_A 245 NMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAV 324 (720)
T ss_dssp SCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEE
T ss_pred cCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEE
Confidence 9999999999888643 1358899999999999999999999999999
Q ss_pred EEechhhccCCCCCCcEEEE----ec----CCCChHHHHHHHhccccCC--CCCeEEEEecCCc
Q psy16310 599 LATDVAARGLDIPGIEHVIH----YH----VPRTSEIYIHRSGRTARAN--NEGLTVVLIESDE 652 (1493)
Q Consensus 599 VaTdv~~rGlDip~v~~VI~----yd----~P~s~~~yiQR~GRagR~g--~~G~~i~l~~~~e 652 (1493)
|||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 325 vaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 325 VATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp EECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred EECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 99999999999999999998 77 6999999999999999988 4799999998876
No 55
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.4e-39 Score=422.52 Aligned_cols=353 Identities=22% Similarity=0.275 Sum_probs=256.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|++++|++.+.+.+...||..|+|+|.++++.++..+++++++||||||||++|.+|+++.+..
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------------- 73 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------------- 73 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------------
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------------
Confidence 368999999999999999999999999999999657789999999999999999999999987642
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
.+.+++|++|+++||.|+++.++.+. ..++++..++|+......+ ...+
T Consensus 74 ---------------------------~~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~ 122 (715)
T 2va8_A 74 ---------------------------NGGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNY 122 (715)
T ss_dssp ---------------------------SCSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGC
T ss_pred ---------------------------CCCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCC
Confidence 23579999999999999999996543 3588999999987654321 2367
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||++|..++.+... .+.++++|||||||++.+.++...++.++.++.
T Consensus 123 ~Iiv~Tpe~l~~~~~~~~~---~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~------------------------- 174 (715)
T 2va8_A 123 DIIITTYEKLDSLWRHRPE---WLNEVNYFVLDELHYLNDPERGPVVESVTIRAK------------------------- 174 (715)
T ss_dssp SEEEECHHHHHHHHHHCCG---GGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-------------------------
T ss_pred CEEEEcHHHHHHHHhCChh---HhhccCEEEEechhhcCCcccchHHHHHHHhcc-------------------------
Confidence 9999999999998886432 356899999999999988789988988887763
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
..|++++|||+++. ..+ ..++... ... .... +..+.... .
T Consensus 175 ---------~~~ii~lSATl~n~-~~~-----------------------~~~l~~~---~~~--~~~r-~~~l~~~~-~ 214 (715)
T 2va8_A 175 ---------RRNLLALSATISNY-KQI-----------------------AKWLGAE---PVA--TNWR-PVPLIEGV-I 214 (715)
T ss_dssp ---------TSEEEEEESCCTTH-HHH-----------------------HHHHTCE---EEE--CCCC-SSCEEEEE-E
T ss_pred ---------cCcEEEEcCCCCCH-HHH-----------------------HHHhCCC---ccC--CCCC-CCCceEEE-E
Confidence 36999999999742 111 1222100 000 0000 00000000 0
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF 550 (1493)
........+ ....... ..............+...+ ..++++|||
T Consensus 215 ~~~~~~~~~---------------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~LVF 258 (715)
T 2va8_A 215 YPERKKKEY---------------------------------NVIFKDN--TTKKVHGDDAIIAYTLDSL-SKNGQVLVF 258 (715)
T ss_dssp EECSSTTEE---------------------------------EEEETTS--CEEEEESSSHHHHHHHHHH-TTTCCEEEE
T ss_pred ecCCcccce---------------------------------eeecCcc--hhhhcccchHHHHHHHHHH-hcCCCEEEE
Confidence 000000000 0000000 0000000122333333333 356899999
Q ss_pred ecchhhHHHHHHHHHhcC------------------------------------CCccccccCCCHHHHHHHHHHHhcCC
Q psy16310 551 CNSISSVKRLTQLLTMLK------------------------------------CSPLPLHASMNQRQRLKNLDRFRDQN 594 (1493)
Q Consensus 551 ~~s~~~a~~L~~~L~~~~------------------------------------~~~~~lhg~~~~~~R~~vl~~Fr~g~ 594 (1493)
|+++..++.++..|.... .++..+||+|++.+|..+++.|++|.
T Consensus 259 ~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~ 338 (715)
T 2va8_A 259 RNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRK 338 (715)
T ss_dssp CSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred ECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCC
Confidence 999999999999987542 35888999999999999999999999
Q ss_pred CeEEEEechhhccCCCCCCcEEEE----ec-------CCCChHHHHHHHhccccCC--CCCeEEEEecCCc
Q psy16310 595 NSILLATDVAARGLDIPGIEHVIH----YH-------VPRTSEIYIHRSGRTARAN--NEGLTVVLIESDE 652 (1493)
Q Consensus 595 ~~VLVaTdv~~rGlDip~v~~VI~----yd-------~P~s~~~yiQR~GRagR~g--~~G~~i~l~~~~e 652 (1493)
++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 339 ~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 339 IKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp SCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999999999999999999 99 8999999999999999988 4799999998765
No 56
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.1e-39 Score=433.01 Aligned_cols=292 Identities=20% Similarity=0.235 Sum_probs=219.3
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
..|| +|||+|.+++|. +..|+|++++||||||||++|++|++..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~-il~g~dvlv~ApTGSGKTl~~l~~il~~~--------------------------------- 118 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKR-IVQGKSFTMVAPTGVGKTTFGMMTALWLA--------------------------------- 118 (1104)
T ss_dssp HSSS-CCCHHHHHHHHH-HTTTCCEEECCSTTCCHHHHHHHHHHHHH---------------------------------
T ss_pred hcCC-CCCHHHHHHHHH-HHcCCCEEEEeCCCCcHHHHHHHHHHHHH---------------------------------
Confidence 3688 699999999995 55789999999999999998888877654
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCH---HHHHHHhcCC-CCEEEeCcHHHHHH
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST---EKQLRILNKC-PHILVATPGRLWEF 323 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~---~~~~~~l~~~-~~IiV~TP~~L~~~ 323 (1493)
..++++|||+||++||.|+++.+..++ ..++++..++|+.+. ..++..+..+ ++|+|+||++|.++
T Consensus 119 ---------~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~ 188 (1104)
T 4ddu_A 119 ---------RKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN 188 (1104)
T ss_dssp ---------TTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHS
T ss_pred ---------hcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHH
Confidence 234679999999999999999999987 778999999999987 6666777665 99999999999888
Q ss_pred HHcCCccccccccccEEEEecCchh----------hh-cCChhh-HHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 324 IQLGHFHLTELYKINYLVIDETDRM----------IE-SGHFPE-LKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 324 l~~~~~~~~~l~~i~~lViDEAh~l----------l~-~~~~~~-l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
+.. ..+.++++|||||||++ ++ ++|... +..++..++... .
T Consensus 189 l~~-----l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~----------------------~ 241 (1104)
T 4ddu_A 189 REK-----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGK----------------------I 241 (1104)
T ss_dssp HHH-----HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTS----------------------C
T ss_pred HHh-----hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccch----------------------h
Confidence 763 23558999999999754 45 788887 788887764100 0
Q ss_pred ccccCCCCCceEEEEeecc-chhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATL-THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
..........|+++||||+ |..+...+. ...+.. .+.
T Consensus 242 ~~~~~~~~~~q~ll~SAT~~p~~~~~~~~---------------------~~~l~i------~v~--------------- 279 (1104)
T 4ddu_A 242 YERPKNLKPGILVVSSATAKPRGIRPLLF---------------------RDLLNF------TVG--------------- 279 (1104)
T ss_dssp CCCCSSCCCCEEEEECBSSCCCSSTTHHH---------------------HHHTCC------CCC---------------
T ss_pred hhhhccCCCceEEEEcCCCCcHHHHHHHh---------------------hcceeE------Eec---------------
Confidence 0000112568999999994 443322110 000000 000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF 550 (1493)
........+......+ .+...+..++...++++|||
T Consensus 280 -----------------------------------------~~~~~~~~i~~~~~~~---~k~~~L~~ll~~~~~~~LVF 315 (1104)
T 4ddu_A 280 -----------------------------------------RLVSVARNITHVRISS---RSKEKLVELLEIFRDGILIF 315 (1104)
T ss_dssp -----------------------------------------BCCCCCCCEEEEEESC---CCHHHHHHHHHHHCSSEEEE
T ss_pred -----------------------------------------cCCCCcCCceeEEEec---CHHHHHHHHHHhcCCCEEEE
Confidence 0000001111111222 35556677777777899999
Q ss_pred ecchhhHHHHHHHHHhcCCCcc-ccccCCCHHHHHHHHHHHhcCCCeEEEE----echhhccCCCCC-CcEEEEecCCC
Q psy16310 551 CNSISSVKRLTQLLTMLKCSPL-PLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPG-IEHVIHYHVPR 623 (1493)
Q Consensus 551 ~~s~~~a~~L~~~L~~~~~~~~-~lhg~~~~~~R~~vl~~Fr~g~~~VLVa----Tdv~~rGlDip~-v~~VI~yd~P~ 623 (1493)
|+++..++.++..|...++.+. .+||. |.+ ++.|++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 316 ~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 316 AQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp ESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred ECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9999999999999999999998 99992 555 99999999999999 999999999999 99999999998
No 57
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.1e-39 Score=425.37 Aligned_cols=347 Identities=16% Similarity=0.203 Sum_probs=256.4
Q ss_pred cccccC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 152 EWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 152 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
+|++++ |++.+.+.+...||..|+|+|.++++. +..++|++++||||||||++|.+|+++.+..
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------- 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEK-VFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------- 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHH-HTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHH-HhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------------
Confidence 477888 999999999999999999999999985 6788999999999999999999999987631
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
+.+++|++||++||.|+++.++.+. ..++++..++|+...... ....
T Consensus 68 -----------------------------~~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~ 114 (702)
T 2p6r_A 68 -----------------------------GGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGD 114 (702)
T ss_dssp -----------------------------TCCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTT
T ss_pred -----------------------------CCcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccC
Confidence 3479999999999999999996543 458999999998654332 1236
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|..++.+... .+.++++|||||||++.++++...++.++.++...
T Consensus 115 ~~Iiv~Tpe~l~~~l~~~~~---~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~---------------------- 169 (702)
T 2p6r_A 115 CDIIVTTSEKADSLIRNRAS---WIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---------------------- 169 (702)
T ss_dssp CSEEEEEHHHHHHHHHTTCS---GGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH----------------------
T ss_pred CCEEEECHHHHHHHHHcChh---HHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc----------------------
Confidence 79999999999998886432 35689999999999998888999999988776422
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
.+..|++++|||+++. ..+ ..++... .... ... +..+....
T Consensus 170 --------~~~~~ii~lSATl~n~-~~~-----------------------~~~l~~~---~~~~--~~r-~~~l~~~~- 210 (702)
T 2p6r_A 170 --------NKALRVIGLSATAPNV-TEI-----------------------AEWLDAD---YYVS--DWR-PVPLVEGV- 210 (702)
T ss_dssp --------CTTCEEEEEECCCTTH-HHH-----------------------HHHTTCE---EEEC--CCC-SSCEEEEE-
T ss_pred --------CcCceEEEECCCcCCH-HHH-----------------------HHHhCCC---cccC--CCC-CccceEEE-
Confidence 3457999999999742 211 1121100 0000 000 00000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 549 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~II 549 (1493)
. ..+.. . ....... ....-.....+...+ ..++++||
T Consensus 211 ~--------------------------------~~~~~-~------~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~LV 247 (702)
T 2p6r_A 211 L--------------------------------CEGTL-E------LFDGAFS---TSRRVKFEELVEECV-AENGGVLV 247 (702)
T ss_dssp E--------------------------------CSSEE-E------EEETTEE---EEEECCHHHHHHHHH-HTTCCEEE
T ss_pred e--------------------------------eCCee-e------ccCcchh---hhhhhhHHHHHHHHH-hcCCCEEE
Confidence 0 00000 0 0000000 000000233333333 45789999
Q ss_pred EecchhhHHHHHHHHHhc------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEE
Q psy16310 550 FCNSISSVKRLTQLLTML------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLV 599 (1493)
||+++..++.++..|... +.++..+||+|++.+|..+++.|++|.++|||
T Consensus 248 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlv 327 (702)
T 2p6r_A 248 FESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVV 327 (702)
T ss_dssp ECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEE
T ss_pred EcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 999999999999888643 24678899999999999999999999999999
Q ss_pred EechhhccCCCCCCcEEEE----ec---CCCChHHHHHHHhccccCC--CCCeEEEEecCCc
Q psy16310 600 ATDVAARGLDIPGIEHVIH----YH---VPRTSEIYIHRSGRTARAN--NEGLTVVLIESDE 652 (1493)
Q Consensus 600 aTdv~~rGlDip~v~~VI~----yd---~P~s~~~yiQR~GRagR~g--~~G~~i~l~~~~e 652 (1493)
||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 328 aT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 328 ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp ECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred ECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999999998 77 7999999999999999988 4799999998866
No 58
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.4e-39 Score=426.82 Aligned_cols=424 Identities=16% Similarity=0.143 Sum_probs=226.7
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHH
Q psy16310 163 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 242 (1493)
Q Consensus 163 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1493)
..++..+||..|+++|.++++. +..|+|+|+++|||||||++|++|+++++....
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~-~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~------------------------ 57 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALP-AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------------------------ 57 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------------------------
T ss_pred CCcccccCCCCccHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc------------------------
Confidence 3556788999999999999985 557899999999999999999999998875311
Q ss_pred HHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHH
Q psy16310 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322 (1493)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~ 322 (1493)
...+.++|||+||++|+.|+.+.+..++...++++..++|+.....++..+..+++|+|+||++|.+
T Consensus 58 -------------~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~ 124 (696)
T 2ykg_A 58 -------------QGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124 (696)
T ss_dssp -------------TTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHH
T ss_pred -------------cCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHH
Confidence 1123579999999999999999999998888999999999987655555566678999999999999
Q ss_pred HHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCce
Q psy16310 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402 (1493)
Q Consensus 323 ~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 402 (1493)
.+..+... .+.++++|||||||++.+.+. +..++..+... ..........+
T Consensus 125 ~l~~~~~~--~l~~~~~vViDEaH~~~~~~~---~~~i~~~~l~~------------------------~~~~~~~~~~~ 175 (696)
T 2ykg_A 125 NLKKGTIP--SLSIFTLMIFDECHNTSKQHP---YNMIMFNYLDQ------------------------KLGGSSGPLPQ 175 (696)
T ss_dssp HHHTTSSC--CGGGCSEEEEETGGGCSTTCH---HHHHHHHHHHH------------------------HHTTCCSCCCE
T ss_pred HHhcCccc--ccccccEEEEeCCCcccCccc---HHHHHHHHHHH------------------------hhcccCCCCCe
Confidence 99876541 255789999999999975542 22222211000 00011134579
Q ss_pred EEEEeeccch--------hhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccC
Q psy16310 403 TFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 474 (1493)
Q Consensus 403 ~il~SATl~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1493)
++++|||+.. .+..+..+... ...............+..+............. .....+.. .+....
T Consensus 176 il~LTATp~~~~~~~~~~~~~~i~~~~~~-l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~--~~~~~fs~--~~~~l~ 250 (696)
T 2ykg_A 176 VIGLTASVGVGDAKTTDEALDYICKLCAS-LDASVIATVKHNLEELEQVVYKPQKFFRKVES--RISDKFKY--IIAQLM 250 (696)
T ss_dssp EEEEESCCCCSSCCSHHHHHHHHHHHHHH-TTCCEEECCCTTHHHHHHHSCCCEEEEEECCC--CSCCHHHH--HHHHHH
T ss_pred EEEEeCccccCccccHHHHHHHHHHHHHh-cCCceEeecccchHHHHhhcCCCceeEEecCc--ccCChHHH--HHHHHH
Confidence 9999999972 11111111100 00000111111111111111100000000000 00000000 000000
Q ss_pred CcchhhHHHHhc-------CCCcch-hhHHHhhhh---cc------------------------------CCccccccc-
Q psy16310 475 EKDSYLYYFILQ-------HPGRTL-CEEIQDLLN---IK------------------------------SPKIVDLTE- 512 (1493)
Q Consensus 475 ~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~---~~------------------------------~~~~~~~~~- 512 (1493)
.....+...+.. ...... ...+..+.. .. .+.......
T Consensus 251 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~ 330 (696)
T 2ykg_A 251 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 330 (696)
T ss_dssp HHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhh
Confidence 000000000000 000000 000000000 00 000000000
Q ss_pred -------------c--cccccccccccc---------------c-cccCchhhHHHHHHhhC-----CCcEEEEecchhh
Q psy16310 513 -------------K--IGITKTLTESKI---------------L-CKHDEKDSYLYYFILQH-----PGRTLVFCNSISS 556 (1493)
Q Consensus 513 -------------~--~~~~~~~~~~~~---------------~-~~~~~k~~~l~~~l~~~-----~~~~IIF~~s~~~ 556 (1493)
. ............ . ...+.|...|..++... ++++||||+++.+
T Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~ 410 (696)
T 2ykg_A 331 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 410 (696)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHH
Confidence 0 000000000000 0 02456777777777653 5799999999999
Q ss_pred HHHHHHHHHhcC----CCcccc--------ccCCCHHHHHHHHHHHhc-CCCeEEEEechhhccCCCCCCcEEEEecCCC
Q psy16310 557 VKRLTQLLTMLK----CSPLPL--------HASMNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPR 623 (1493)
Q Consensus 557 a~~L~~~L~~~~----~~~~~l--------hg~~~~~~R~~vl~~Fr~-g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~ 623 (1493)
++.++..|...+ +.+..+ ||+|++.+|..+++.|++ |+.+|||||+++++|||+|+|++||+||+|.
T Consensus 411 ~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~ 490 (696)
T 2ykg_A 411 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 490 (696)
T ss_dssp HHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC-
T ss_pred HHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCC
Confidence 999999999887 788877 569999999999999998 9999999999999999999999999999999
Q ss_pred ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 624 s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|+..|+||+|| ||+ +.|.|++|++..+......++
T Consensus 491 s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~ 525 (696)
T 2ykg_A 491 NVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQIN 525 (696)
T ss_dssp -CCCC-----------CCCEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHH
Confidence 99999999999 998 689999999988876655553
No 59
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.3e-39 Score=404.40 Aligned_cols=429 Identities=15% Similarity=0.149 Sum_probs=236.4
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
+|. +||++|..++| .+..|+ |+.++||||||++|++|++...+
T Consensus 71 lg~-~p~~VQ~~~i~-~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l--------------------------------- 113 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGM-VLNERC--IAEMRTGEGKTLTATLPAYLNAL--------------------------------- 113 (853)
T ss_dssp HSC-CCCHHHHHHHH-HHHSSE--EEECCTTSCHHHHHHHHHHHHHT---------------------------------
T ss_pred cCC-CCChHHHhhcc-cccCCe--eeeecCCchHHHHHHHHHHHHHH---------------------------------
Confidence 465 89999999999 555665 99999999999999999985432
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
.+..|+||+||++||.|++.++..++.++++++++++||.+.... .+..+++|+|||||+| .++|...
T Consensus 114 ---------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~ 182 (853)
T 2fsf_A 114 ---------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDN 182 (853)
T ss_dssp ---------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHT
T ss_pred ---------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhh
Confidence 234699999999999999999999999999999999999986533 3344689999999999 7888754
Q ss_pred Cc---cccccccccEEEEecCchhh-hcC---------------ChhhHHHHHHhhccccC---------------CCcc
Q psy16310 328 HF---HLTELYKINYLVIDETDRMI-ESG---------------HFPELKNILDRVTMTET---------------SQPR 373 (1493)
Q Consensus 328 ~~---~~~~l~~i~~lViDEAh~ll-~~~---------------~~~~l~~il~~l~~~~~---------------~~~~ 373 (1493)
.. ....++++.++|+||||+|| +.+ ++..+..|+..+..... +..+
T Consensus 183 ~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~r 262 (853)
T 2fsf_A 183 MAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSR 262 (853)
T ss_dssp TCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC------------------------------------------
T ss_pred hhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccc
Confidence 21 11235689999999999999 543 55677777776642100 0000
Q ss_pred ccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchh---hhhhhhhhccccccccccCCCchhhhHHhhhhccCCc
Q psy16310 374 QTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS---LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450 (1493)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (1493)
+..+...........+..... -...-.+||||.+.. +...++..............++.+..+..+-....+.
T Consensus 263 qv~lte~g~~~~e~~l~~~~l----~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~g 338 (853)
T 2fsf_A 263 QVNLTERGLVLIEELLVKEGI----MDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQG 338 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEcHHHHHHHHHHHHhCCc----ccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCC
Confidence 100000000000000000000 000012899998642 2221110000000000000000000000000000000
Q ss_pred ccchhhhhccccccchh-hhhhccC----CcchhhHHHHh----cCCCcchhhHHHhhhhccCCcccccccccccccccc
Q psy16310 451 IVDLTEKIGITKTLTES-KILCKHD----EKDSYLYYFIL----QHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521 (1493)
Q Consensus 451 ~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1493)
..+.. ++...+... .+..... ..-.+..|+-. ..-..+...+...+...+...+..+...........
T Consensus 339 -rr~sd--GLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~ 415 (853)
T 2fsf_A 339 -RRWSD--GLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDL 415 (853)
T ss_dssp ---------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEEC
T ss_pred -Cccch--hhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecC
Confidence 00000 000000000 0000000 00011111100 000001111112222222222222222222222222
Q ss_pred ccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEE
Q psy16310 522 ESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598 (1493)
Q Consensus 522 ~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VL 598 (1493)
...+.+....|...+...+.. .+.++||||+|+..++.|+..|...|+.+.++||++.+.++..+.++|+.| .|+
T Consensus 416 ~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~Vt 493 (853)
T 2fsf_A 416 PDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVT 493 (853)
T ss_dssp CCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEE
T ss_pred CcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEE
Confidence 233455667788888877743 356899999999999999999999999999999999999988888999988 699
Q ss_pred EEechhhccCCCCCC-------------------------------------cEEEEecCCCChHHHHHHHhccccCCCC
Q psy16310 599 LATDVAARGLDIPGI-------------------------------------EHVIHYHVPRTSEIYIHRSGRTARANNE 641 (1493)
Q Consensus 599 VaTdv~~rGlDip~v-------------------------------------~~VI~yd~P~s~~~yiQR~GRagR~g~~ 641 (1493)
||||+|+||+||+.. .+||+|+.|.|...|+||+|||||+|.+
T Consensus 494 IATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~ 573 (853)
T 2fsf_A 494 IATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDA 573 (853)
T ss_dssp EEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred EecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCC
Confidence 999999999999974 6999999999999999999999999999
Q ss_pred CeEEEEecCCcch
Q psy16310 642 GLTVVLIESDEIP 654 (1493)
Q Consensus 642 G~~i~l~~~~e~~ 654 (1493)
|.+++|++.+|..
T Consensus 574 G~s~~fls~eD~l 586 (853)
T 2fsf_A 574 GSSRFYLSMEDAL 586 (853)
T ss_dssp EEEEEEEETTSGG
T ss_pred eeEEEEecccHHH
Confidence 9999999988743
No 60
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.7e-39 Score=424.72 Aligned_cols=359 Identities=21% Similarity=0.193 Sum_probs=209.6
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
-.|+..|+|+|.++|+.+ ..|+|+++++|||||||++|++|+++.+....
T Consensus 243 ~~g~~~l~~~Q~~~i~~~-l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----------------------------- 292 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPA-INGKNALICAPTGSGKTFVSILICEHHFQNMP----------------------------- 292 (797)
T ss_dssp -----CCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----------------------------
T ss_pred hcCCCCCCHHHHHHHHHH-HhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----------------------------
Confidence 358999999999999955 46789999999999999999999998875421
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~ 944 (1493)
...+.++|||+||++|+.|+++.++.++...++++..++|+.....+...+..+++|+|+||++|.+++..+
T Consensus 293 --------~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 364 (797)
T 4a2q_A 293 --------AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG 364 (797)
T ss_dssp --------SSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS
T ss_pred --------ccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc
Confidence 122567999999999999999999999888889999999999877766666678899999999999999865
Q ss_pred cCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch-------HhHH---hhhccCc
Q psy16310 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL-------KNSL---NLKKGQS 1014 (1493)
Q Consensus 945 ~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~-------~~~~---~~~~~~~ 1014 (1493)
.. ..+.++++|||||||++...+.+..+...+-........+..+++++|||++... ...+ ....+..
T Consensus 365 ~~--~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~ 442 (797)
T 4a2q_A 365 TL--TSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ 442 (797)
T ss_dssp SC--CCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS
T ss_pred cc--cccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc
Confidence 53 2466889999999999987654333221111111112245689999999996321 0100 0000000
Q ss_pred CcccccCCCchhHHHHhHhccCCCcEEeccccc------------------------------------cc---------
Q psy16310 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI------------------------------------GI--------- 1049 (1493)
Q Consensus 1015 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------------------------~~--------- 1049 (1493)
.+.........+...+.............. ..
T Consensus 443 ---~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~ 519 (797)
T 4a2q_A 443 ---AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVV 519 (797)
T ss_dssp ---EEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHH
T ss_pred ---EEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHH
Confidence 000000011111111111111110000000 00
Q ss_pred ----------c----------------cc----------------------cee--------------------------
Q psy16310 1050 ----------T----------------KT----------------------LTE-------------------------- 1055 (1493)
Q Consensus 1050 ----------~----------------~~----------------------~~~-------------------------- 1055 (1493)
. .. +..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (797)
T 4a2q_A 520 TQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEP 599 (797)
T ss_dssp HHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHH
T ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHH
Confidence 0 00 000
Q ss_pred -----eEEEecccchhhHHHHHHHh-----CCCcEEEEecchhhHHHHHHHHHhc------------CCCccccccCCCH
Q psy16310 1056 -----SKILCKHDEKDSYLYYFILQ-----HPGRTLVFCNSISSVKRLTQLLTML------------KCSPLPLHASMNQ 1113 (1493)
Q Consensus 1056 -----~~~~~~~~~k~~~l~~~l~~-----~~~~~IVF~~s~~~~~~l~~~L~~~------------~~~~~~lhg~m~~ 1113 (1493)
.........|...|..++.. .++++||||+++..++.++..|... |.....+||+|++
T Consensus 600 ~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~ 679 (797)
T 4a2q_A 600 ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTL 679 (797)
T ss_dssp HHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------
T ss_pred HHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCH
Confidence 00000023455556666543 3589999999999999999999873 5666778999999
Q ss_pred HHHHHHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHH
Q psy16310 1114 RQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188 (1493)
Q Consensus 1114 ~~R~~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~ 1188 (1493)
.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.+++|+++.+...
T Consensus 680 ~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 680 PSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp --------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred HHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 999999999999 999999999999999999999999999999999999999999 999 8999999998876543
No 61
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.8e-39 Score=415.20 Aligned_cols=414 Identities=17% Similarity=0.158 Sum_probs=233.5
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
+|+|+|.++++. +..++|+|+++|||||||++|++|+++.+....
T Consensus 4 ~~~~~Q~~~i~~-~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---------------------------------- 48 (555)
T 3tbk_A 4 KPRNYQLELALP-AKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---------------------------------- 48 (555)
T ss_dssp CCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----------------------------------
T ss_pred CCcHHHHHHHHH-HhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----------------------------------
Confidence 699999999984 557899999999999999999999998875421
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
...+.++|||+||++|+.|+++.+..++...++++..++|+.....++..+..+++|+|+||++|.+++..+.. .
T Consensus 49 ---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~--~ 123 (555)
T 3tbk_A 49 ---CGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAI--P 123 (555)
T ss_dssp ---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSS--C
T ss_pred ---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcc--c
Confidence 12256799999999999999999999988889999999999877666666666789999999999999987654 1
Q ss_pred ccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccch
Q psy16310 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~ 412 (1493)
.+.++++|||||||++.+.+. +..++..+... ..........|+++||||++.
T Consensus 124 ~~~~~~~vViDEah~~~~~~~---~~~~~~~~~~~------------------------~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 124 SLSVFTLMIFDECHNTSKNHP---YNQIMFRYLDH------------------------KLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp CGGGCSEEEETTGGGCSTTCH---HHHHHHHHHHH------------------------HTSSCCSCCCEEEEEESCCCC
T ss_pred ccccCCEEEEECccccCCcch---HHHHHHHHHHh------------------------hhccccCCCCeEEEEecCccc
Confidence 355789999999999987653 22322221110 000111345799999999964
Q ss_pred hh--------hhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh--------hhhccCCc
Q psy16310 413 SL--------KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK--------ILCKHDEK 476 (1493)
Q Consensus 413 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 476 (1493)
.- ..+..+... .....+.........+..+............. .....+.... .+......
T Consensus 177 ~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (555)
T 3tbk_A 177 GDAKTAEEAMQHICKLCAA-LDASVIATVRDNVAELEQVVYKPQKISRKVAS--RTSNTFKCIISQLMKETEKLAKDVSE 253 (555)
T ss_dssp TTCCSHHHHHHHHHHHHHH-TTCSEEECCCSCHHHHHTTCCCCCEEEEECCC--CSCCHHHHHHHHHHHHHHHHHHTSCH
T ss_pred CccccHHHHHHHHHHHHHh-cCCeeeeccccCHHHHHhhcCCCceEEEEecC--cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 21 100000000 00000000000000111100000000000000 0000000000 00000000
Q ss_pred chhhHHHHhcCCCcchhh-----HHHhhhh---ccC-Cc--------------------------------cc-------
Q psy16310 477 DSYLYYFILQHPGRTLCE-----EIQDLLN---IKS-PK--------------------------------IV------- 508 (1493)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~-~~--------------------------------~~------- 508 (1493)
.+. .+.......... .+..+.. ... +. ..
T Consensus 254 --~l~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 330 (555)
T 3tbk_A 254 --ELG-KLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLK 330 (555)
T ss_dssp --HHH-GGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred --hhh-hhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 000 000000000000 0000000 000 00 00
Q ss_pred cccccc---c--------------ccccccc-cccccccCchhhHHHHHHhh-----CCCcEEEEecchhhHHHHHHHHH
Q psy16310 509 DLTEKI---G--------------ITKTLTE-SKILCKHDEKDSYLYYFILQ-----HPGRTLVFCNSISSVKRLTQLLT 565 (1493)
Q Consensus 509 ~~~~~~---~--------------~~~~~~~-~~~~~~~~~k~~~l~~~l~~-----~~~~~IIF~~s~~~a~~L~~~L~ 565 (1493)
...... . ....+.. .......+.|...|..++.. .++++||||+++.+++.++..|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~ 410 (555)
T 3tbk_A 331 AFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIE 410 (555)
T ss_dssp HHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHh
Confidence 000000 0 0000000 00011235677777777754 35899999999999999999998
Q ss_pred hcC------------CCccccccCCCHHHHHHHHHHHhc-CCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHH
Q psy16310 566 MLK------------CSPLPLHASMNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632 (1493)
Q Consensus 566 ~~~------------~~~~~lhg~~~~~~R~~vl~~Fr~-g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~ 632 (1493)
..+ .+...+||+|++.+|..+++.|++ |+++|||||+++++|||+|+|++||+||+|.|+..|+||+
T Consensus 411 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~ 490 (555)
T 3tbk_A 411 ENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTR 490 (555)
T ss_dssp HCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSS
T ss_pred hCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhc
Confidence 763 455567779999999999999999 9999999999999999999999999999999999999999
Q ss_pred hccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 633 GRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 633 GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
|| ||. +.|.|++|+++.+......++.
T Consensus 491 GR-gR~-~~g~~~~l~~~~~~~~~~~~~~ 517 (555)
T 3tbk_A 491 GR-GRA-RDSKCFLLTSSADVIEKEKANM 517 (555)
T ss_dssp CC-CTT-TSCEEEEEESCHHHHHHHHHHH
T ss_pred Cc-CcC-CCceEEEEEcCCCHHHHHHHhh
Confidence 99 998 7999999999988776655543
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.7e-39 Score=442.24 Aligned_cols=346 Identities=21% Similarity=0.261 Sum_probs=255.0
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
||++++++|.+++|.++..++|++++||||||||++|.+||++.+........
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~--------------------------- 128 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDG--------------------------- 128 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTS---------------------------
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccc---------------------------
Confidence 89999999999999999889999999999999999999999999865422110
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
.....+.++||++||++||.|+++.|.+.+...+++|..++|+.....+. ...++|+|+|||++..++.. ..
T Consensus 129 ----~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~-~~ 200 (1724)
T 4f92_B 129 ----TINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRK-GG 200 (1724)
T ss_dssp ----SCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTS-ST
T ss_pred ----cccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcC-Cc
Confidence 12245678999999999999999999998888999999999987654321 23579999999997444433 33
Q ss_pred ccccccceeEEEecccchhccCCChhHHHHHHHHhcc--cCCCCCceEEEEecccccc--hHhHHhhhccCcCcccccCC
Q psy16310 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM--TETSQPRQTFVFSATLTHS--LKNSLNLKKGQSKSKKVSKG 1022 (1493)
Q Consensus 947 ~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~--~~~~~~~q~ll~SATl~~~--~~~~~~~~~~~~~~~~~~~~ 1022 (1493)
....+..+++|||||+|.+-+ .++..++.++.++.. ...+.+.|++++|||+|+. +..++
T Consensus 201 ~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL--------------- 264 (1724)
T 4f92_B 201 ERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFL--------------- 264 (1724)
T ss_dssp THHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHT---------------
T ss_pred cchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHh---------------
Confidence 233477899999999996544 677788877765432 1224678999999999853 22222
Q ss_pred CchhHHHHhHhccCCCc-EEeccccccccccceeeEEEecccch-------hhHHHHHHHhC--CCcEEEEecchhhHHH
Q psy16310 1023 DPSIKRLQDLLNIKSPK-IVDLTEKIGITKTLTESKILCKHDEK-------DSYLYYFILQH--PGRTLVFCNSISSVKR 1092 (1493)
Q Consensus 1023 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k-------~~~l~~~l~~~--~~~~IVF~~s~~~~~~ 1092 (1493)
....+. ...+. ....+-.+.+.++....... ...+...+... .+++||||+|++.|+.
T Consensus 265 -----------~~~~~~~~~~~~-~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~ 332 (1724)
T 4f92_B 265 -----------RVDPAKGLFYFD-NSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGK 332 (1724)
T ss_dssp -----------TCCHHHHEEECC-GGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHH
T ss_pred -----------CCCCCCCeEEEC-CCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHH
Confidence 110000 00000 00111122222222211111 11222223332 5689999999999999
Q ss_pred HHHHHHhc-------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeeh
Q psy16310 1093 LTQLLTML-------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135 (1493)
Q Consensus 1093 l~~~L~~~-------------------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTd 1135 (1493)
++..|... ..+++.|||+|++.+|..+++.|++|.++|||||+
T Consensus 333 ~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTs 412 (1724)
T 4f92_B 333 TARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTA 412 (1724)
T ss_dssp HHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECH
T ss_pred HHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcc
Confidence 88887531 24577899999999999999999999999999999
Q ss_pred hhhccccCCCccEEEE----ecC------CCChhHHHHHHhccCCCCC--CCeEEEEecCCCHHHHHHHHHh
Q psy16310 1136 VAARGLDIPGIEHVIH----YHV------PRTSEIYIHRSGRTARANN--EGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1136 v~~~GiDip~v~~VI~----~d~------p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
++++|||+|++++||. |+. |-+..+|+||+|||||+|. .|.+++++.+.+...+..++..
T Consensus 413 TLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~ 484 (1724)
T 4f92_B 413 TLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQ 484 (1724)
T ss_dssp HHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTT
T ss_pred hhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcC
Confidence 9999999999999996 554 5689999999999999874 7999999999998888877543
No 63
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-38 Score=417.72 Aligned_cols=346 Identities=18% Similarity=0.185 Sum_probs=247.8
Q ss_pred HHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 784 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 784 ~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
...+|+ |+|+|.++|+. +..+++++++||||||||++|.+|++..+.
T Consensus 81 ~~~~f~-L~~~Q~eai~~-l~~g~~vLV~apTGSGKTlva~lai~~~l~------------------------------- 127 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISC-IDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------------------------- 127 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHH-HHHTCEEEEECCTTSCHHHHHHHHHHHHHH-------------------------------
T ss_pred HhCCCC-CCHHHHHHHHH-HHcCCCEEEECCCCCChHHHHHHHHHHHhc-------------------------------
Confidence 345775 99999999985 667899999999999999999999987652
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHh
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~ 943 (1493)
.+.++||++||++|+.|+++.+..++. .++.++|+.... ..++|+|+||++|.+++.+
T Consensus 128 -----------~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~ 185 (1010)
T 2xgj_A 128 -----------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR 185 (1010)
T ss_dssp -----------TTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH
T ss_pred -----------cCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc
Confidence 235799999999999999999999764 678888887532 3579999999999998876
Q ss_pred CcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH--hHHhhhccCcCcccccC
Q psy16310 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK--NSLNLKKGQSKSKKVSK 1021 (1493)
Q Consensus 944 ~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~--~~~~~~~~~~~~~~~~~ 1021 (1493)
+.. .+.++++|||||||+|.++++...+..++..+ +...|++++|||+++... .++....+.........
T Consensus 186 ~~~---~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l-----~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~ 257 (1010)
T 2xgj_A 186 GSE---VMREVAWVIFDEVHYMRDKERGVVWEETIILL-----PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN 257 (1010)
T ss_dssp TCT---TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS-----CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC
T ss_pred Ccc---hhhcCCEEEEechhhhcccchhHHHHHHHHhc-----CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC
Confidence 543 46789999999999999999988888888877 467899999999987532 22221111100000000
Q ss_pred CCchhHHHHhHhcc-C-CCcEEeccccccc--------ccccee------------eEE----Ee---c--ccchhhHHH
Q psy16310 1022 GDPSIKRLQDLLNI-K-SPKIVDLTEKIGI--------TKTLTE------------SKI----LC---K--HDEKDSYLY 1070 (1493)
Q Consensus 1022 ~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~--------~~~~~~------------~~~----~~---~--~~~k~~~l~ 1070 (1493)
..+. .+...+.. . ............. ...+.. ... .. . .......++
T Consensus 258 ~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~ 335 (1010)
T 2xgj_A 258 FRPT--PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIV 335 (1010)
T ss_dssp CCSS--CEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHH
T ss_pred CCcc--cceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHH
Confidence 0000 00000000 0 0000000000000 000000 000 00 0 012223344
Q ss_pred HHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCC---------------------------------------ccccccC
Q psy16310 1071 YFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCS---------------------------------------PLPLHAS 1110 (1493)
Q Consensus 1071 ~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~---------------------------------------~~~lhg~ 1110 (1493)
..+... ..++||||+|+..|+.++..|...++. +..|||+
T Consensus 336 ~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hgg 415 (1010)
T 2xgj_A 336 KMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSG 415 (1010)
T ss_dssp HHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTT
T ss_pred HHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCC
Confidence 444433 459999999999999999999775442 6679999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE----ecC----CCChhHHHHHHhccCCCCC--CCeEEEE
Q psy16310 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH----YHV----PRTSEIYIHRSGRTARANN--EGLTLVL 1180 (1493)
Q Consensus 1111 m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~----~d~----p~s~~~yiqr~GR~gR~g~--~G~~i~l 1180 (1493)
|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||. |.+...|+||+|||||.|. .|.|+++
T Consensus 416 l~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l 495 (1010)
T 2xgj_A 416 LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 495 (1010)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999 999 8999999999999999996 5999999
Q ss_pred ecCC-CHHHHHHHHH
Q psy16310 1181 IESD-EIPLYIKMFN 1194 (1493)
Q Consensus 1181 ~~~~-e~~~~~~~~~ 1194 (1493)
+++. +...+.+++.
T Consensus 496 ~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 496 IDEKMEPQVAKGMVK 510 (1010)
T ss_dssp ECSCCCHHHHHHHHS
T ss_pred ECCCCCHHHHHHHHh
Confidence 9876 6666666643
No 64
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.5e-39 Score=422.73 Aligned_cols=421 Identities=19% Similarity=0.162 Sum_probs=217.5
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
-.|+..|+|+|.++++. +..++|+|+++|||||||++|++|+++.+....
T Consensus 243 ~~g~~~l~~~Q~~~i~~-~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----------------------------- 292 (797)
T 4a2q_A 243 VYETKKARSYQIELAQP-AINGKNALICAPTGSGKTFVSILICEHHFQNMP----------------------------- 292 (797)
T ss_dssp -----CCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----------------------------
T ss_pred hcCCCCCCHHHHHHHHH-HHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----------------------------
Confidence 35888999999999984 557799999999999999999999998875421
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcC
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~ 327 (1493)
...+.++|||+||++|+.|+++.+..++...++++..++|+.....++..+..+++|+|+||++|.+.+..+
T Consensus 293 --------~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 364 (797)
T 4a2q_A 293 --------AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG 364 (797)
T ss_dssp --------SSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS
T ss_pred --------ccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc
Confidence 122567999999999999999999999887789999999999877777777778999999999999999865
Q ss_pred CccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEe
Q psy16310 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407 (1493)
Q Consensus 328 ~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~S 407 (1493)
.. ..+.++++|||||||++...+.+ ..++..+.... .....+..|+++||
T Consensus 365 ~~--~~~~~~~~iViDEaH~~~~~~~~---~~i~~~~~~~~-------------------------~~~~~~~~~~l~lS 414 (797)
T 4a2q_A 365 TL--TSLSIFTLMIFDECHNTTGNHPY---NVLMTRYLEQK-------------------------FNSASQLPQILGLT 414 (797)
T ss_dssp SC--CCGGGCSEEEETTGGGCSTTSHH---HHHHHHHHHHH-------------------------HTTCCCCCEEEEEE
T ss_pred cc--cccccCCEEEEECccccCCCccH---HHHHHHHHHHh-------------------------hccCCCCCeEEEEc
Confidence 44 13558899999999999765543 33332221100 00113457899999
Q ss_pred eccchh-----------hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhh--------------------
Q psy16310 408 ATLTHS-----------LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-------------------- 456 (1493)
Q Consensus 408 ATl~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 456 (1493)
||++.. +..+...... ..+.........+..++............
T Consensus 415 ATp~~~~~~~~~~~~~~i~~l~~~L~~----~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 490 (797)
T 4a2q_A 415 ASVGVGNAKNIEETIEHICSLCSYLDI----QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEAL 490 (797)
T ss_dssp SCCCCTTCCSHHHHHHHHHHHHHHHTC----SEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHH
T ss_pred CCccccccccHHHHHHHHHHHHHhcCC----cEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHH
Confidence 999531 1111110000 00000000011111111100000000000
Q ss_pred --hh-------ccc-----c-ccchhhhh-------hccCCc--chh--------hHH--------HH-hcCCCcchhhH
Q psy16310 457 --KI-------GIT-----K-TLTESKIL-------CKHDEK--DSY--------LYY--------FI-LQHPGRTLCEE 495 (1493)
Q Consensus 457 --~~-------~~~-----~-~~~~~~~~-------~~~~~~--~~~--------~~~--------~~-~~~~~~~~~~~ 495 (1493)
.. ... . .+...... ...... ... ... .+ ...........
T Consensus 491 ~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 570 (797)
T 4a2q_A 491 MRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSY 570 (797)
T ss_dssp HHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHH
Confidence 00 000 0 00000000 000000 000 000 00 00000000000
Q ss_pred HHhhhh----cc-CCccccccccc-ccccc-ccccccccccCchhhHHHHHHhh-----CCCcEEEEecchhhHHHHHHH
Q psy16310 496 IQDLLN----IK-SPKIVDLTEKI-GITKT-LTESKILCKHDEKDSYLYYFILQ-----HPGRTLVFCNSISSVKRLTQL 563 (1493)
Q Consensus 496 ~~~~~~----~~-~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~k~~~l~~~l~~-----~~~~~IIF~~s~~~a~~L~~~ 563 (1493)
+..... .. ......+.... ..... ..........+.|...|..+|.. .+.++||||+++..+..|+.+
T Consensus 571 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~ 650 (797)
T 4a2q_A 571 LTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKC 650 (797)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHH
Confidence 000000 00 00000000000 00000 00001111246677777777764 358999999999999999999
Q ss_pred HHhc------------CCCccccccCCCHHHHHHHHHHHhc-CCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 564 LTML------------KCSPLPLHASMNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 564 L~~~------------~~~~~~lhg~~~~~~R~~vl~~Fr~-g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
|... |.+...+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+|.|+..|+|
T Consensus 651 L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQ 730 (797)
T 4a2q_A 651 MEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQ 730 (797)
T ss_dssp HHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHT
T ss_pred HHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHH
Confidence 9763 5566778999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 631 RSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 631 R~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
|+|| ||. +.|.|++|+++.+......++..
T Consensus 731 r~GR-GR~-~~g~~i~l~~~~~~ee~~~~~~~ 760 (797)
T 4a2q_A 731 VRGR-GRA-AGSKCILVTSKTEVVENEKCNRY 760 (797)
T ss_dssp C---------CCCEEEEECCHHHHHHHHHHHH
T ss_pred hcCC-CCC-CCceEEEEEeCCcHHHHHHHHHH
Confidence 9999 999 79999999999887665544433
No 65
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.3e-38 Score=395.04 Aligned_cols=397 Identities=17% Similarity=0.171 Sum_probs=260.2
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
+|+ +||++|..++| .+..|+ |+.++||+|||++|+||++...+
T Consensus 108 lG~-rP~~VQ~~~ip-~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL--------------------------------- 150 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAA-ALHLGN--VAEMKTGEGKTLTCVLPAYLNAL--------------------------------- 150 (922)
T ss_dssp HSC-CCCHHHHHHHH-HHHTTE--EEECCTTSCHHHHTHHHHHHHHT---------------------------------
T ss_pred cCC-CCCHHHHHHHH-hHhcCC--EEEecCCCccHHHHHHHHHHHHH---------------------------------
Confidence 588 99999999999 556665 99999999999999999974332
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
.+..|+||+||++||.|+++++..++.++++++++++||.+...... ..++||+|+||++| .++|...
T Consensus 151 ---------~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~ 219 (922)
T 1nkt_A 151 ---------AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDN 219 (922)
T ss_dssp ---------TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHT
T ss_pred ---------hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhh
Confidence 12359999999999999999999999999999999999998654433 33589999999999 7888654
Q ss_pred Cc---cccccccccEEEEecCchhh-hc---------------CChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 328 HF---HLTELYKINYLVIDETDRMI-ES---------------GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 328 ~~---~~~~l~~i~~lViDEAh~ll-~~---------------~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.. ....++.+.++||||||.|| +. +|+..+..|+..+.... +
T Consensus 220 m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~------------d------- 280 (922)
T 1nkt_A 220 MAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDV------------H------- 280 (922)
T ss_dssp TCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTT------------T-------
T ss_pred hhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccc------------c-------
Confidence 21 12236689999999999999 43 46678888887774210 0
Q ss_pred hhhccccCCCCCceEE-----------------EEeeccch---hhhhhhhhhccccccccccCCCch------------
Q psy16310 389 LDRVTMTETSQPRQTF-----------------VFSATLTH---SLKNSLNLKKGQSKSKKVSKGDPS------------ 436 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~i-----------------l~SATl~~---~~~~~~~~~~~~~~~~~~~~~~~~------------ 436 (1493)
.......+|++ +||||.+. .+...+...............++.
T Consensus 281 -----y~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m 355 (922)
T 1nkt_A 281 -----YEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVL 355 (922)
T ss_dssp -----EEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBC
T ss_pred -----ceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCccc
Confidence 00012446776 88999874 332222110000000000000000
Q ss_pred -----hhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHh----cCCCcchhhHHHhhhhccCCcc
Q psy16310 437 -----IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHPGRTLCEEIQDLLNIKSPKI 507 (1493)
Q Consensus 437 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 507 (1493)
-.-+...+..+.. +.+....... ..-.+..++.. ..-..+...+...+...+...+
T Consensus 356 ~grr~sdGLHQaieaKe~--V~I~~e~~Tl-------------atIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~v 420 (922)
T 1nkt_A 356 IGRRYNEGMHQAIEAKEH--VEIKAENQTL-------------ATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGV 420 (922)
T ss_dssp TTCCCSTTHHHHHHHHTT--CCCCCCEEEE-------------EEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEE
T ss_pred CCccccchhhHHHhcccc--cccccccccc-------------ceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCe
Confidence 0000000000000 0000000000 00011111100 0000111112222333333333
Q ss_pred ccccccccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHH
Q psy16310 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584 (1493)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~ 584 (1493)
..+..............+.+....|...+...+.. .+.++||||+|+..++.|+..|...|+.+..+||++.+.++.
T Consensus 421 v~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~ 500 (922)
T 1nkt_A 421 VSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEAT 500 (922)
T ss_dssp EECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHH
T ss_pred EEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHH
Confidence 32222222212222223455566788777777643 356899999999999999999999999999999999888888
Q ss_pred HHHHHHhcCCCeEEEEechhhccCCCCCC---------------------------------------------------
Q psy16310 585 KNLDRFRDQNNSILLATDVAARGLDIPGI--------------------------------------------------- 613 (1493)
Q Consensus 585 ~vl~~Fr~g~~~VLVaTdv~~rGlDip~v--------------------------------------------------- 613 (1493)
.+.+.|+.| .|+||||+|+||+||+.+
T Consensus 501 iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 578 (922)
T 1nkt_A 501 IIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAG 578 (922)
T ss_dssp HHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcC
Confidence 888888888 699999999999999975
Q ss_pred -cEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcch
Q psy16310 614 -EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 614 -~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
.+||+|+.|.|...|+||+|||||.|.+|.+++|++.+|.-
T Consensus 579 GlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 579 GLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp SEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred CcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 59999999999999999999999999999999999987753
No 66
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=9.2e-39 Score=428.08 Aligned_cols=326 Identities=19% Similarity=0.253 Sum_probs=243.2
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
.+||. | ++|.++||. +..|+|+|++||||||||+ |++|++..+..
T Consensus 53 ~~g~~-p-~iQ~~ai~~-il~g~dvlv~apTGSGKTl-~~lp~l~~~~~------------------------------- 97 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKR-ILRKESFAATAPTGVGKTS-FGLAMSLFLAL------------------------------- 97 (1054)
T ss_dssp TTCSC-C-HHHHHHHHH-HHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------------------------------
T ss_pred hcCCC-H-HHHHHHHHH-HHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------------------------------
Confidence 47999 9 999999995 5578999999999999998 99999877642
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCe----EEEEEEcCCCHHHH---HHHhcCCCCEEEeCcHHH
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV----KVACVVGGMSTEKQ---LRILNKCPHILVATPGRL 320 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i----~v~~~~G~~~~~~~---~~~l~~~~~IiV~TP~~L 320 (1493)
.++++|||+||++||.|+++.+..++...++ ++..++|+.+...+ ...+.. ++|+|+||++|
T Consensus 98 ----------~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L 166 (1054)
T 1gku_B 98 ----------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFL 166 (1054)
T ss_dssp ----------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHH
T ss_pred ----------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHH
Confidence 3467999999999999999999999988888 89999999887663 444455 89999999999
Q ss_pred HHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCC
Q psy16310 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQP 400 (1493)
Q Consensus 321 ~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1493)
.+++.+ |.++++|||||||+|++ +...+..++..+........ ...+..
T Consensus 167 ~~~l~~-------L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~----------------------~~~~~~ 215 (1054)
T 1gku_B 167 SKHYRE-------LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKT----------------------KSWVGE 215 (1054)
T ss_dssp HHCSTT-------SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTT----------------------TEEEEC
T ss_pred HHHHHH-------hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhh----------------------hhcccC
Confidence 887653 45889999999999987 67888888887743211000 111345
Q ss_pred ceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhh
Q psy16310 401 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480 (1493)
Q Consensus 401 ~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1493)
.|+++||||++.. ..+.... ....... .+..
T Consensus 216 ~q~~l~SAT~t~~-~~~~~~~------------------~~~~~~i------~v~~------------------------ 246 (1054)
T 1gku_B 216 ARGCLMVSTATAK-KGKKAEL------------------FRQLLNF------DIGS------------------------ 246 (1054)
T ss_dssp CSSEEEECCCCSC-CCTTHHH------------------HHHHHCC------CCSC------------------------
T ss_pred CceEEEEecCCCc-hhHHHHH------------------hhcceEE------EccC------------------------
Confidence 7899999999865 2211100 0000000 0000
Q ss_pred HHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHH
Q psy16310 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 560 (1493)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L 560 (1493)
.......+..... ...+...+..++...++++||||+++..|+.+
T Consensus 247 --------------------------------~~~~~~~i~~~~~---~~~k~~~L~~ll~~~~~~~LVF~~t~~~a~~l 291 (1054)
T 1gku_B 247 --------------------------------SRITVRNVEDVAV---NDESISTLSSILEKLGTGGIIYARTGEEAEEI 291 (1054)
T ss_dssp --------------------------------CEECCCCEEEEEE---SCCCTTTTHHHHTTSCSCEEEEESSHHHHHHH
T ss_pred --------------------------------cccCcCCceEEEe---chhHHHHHHHHHhhcCCCEEEEEcCHHHHHHH
Confidence 0000000000001 23445556667777678999999999999999
Q ss_pred HHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEE----echhhccCCCCCC-cEEEEecCC-------------
Q psy16310 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPGI-EHVIHYHVP------------- 622 (1493)
Q Consensus 561 ~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVa----Tdv~~rGlDip~v-~~VI~yd~P------------- 622 (1493)
+..|... +.+..+||+|. .+++.|++|+.+|||| |+++++|||+|+| ++||+||+|
T Consensus 292 ~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~ 365 (1054)
T 1gku_B 292 YESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLS 365 (1054)
T ss_dssp HHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSC
T ss_pred HHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccCh
Confidence 9999988 99999999983 7889999999999999 9999999999996 999999999
Q ss_pred ----------------------------------------------------------CChHHHHHHHhccccCCCCC--
Q psy16310 623 ----------------------------------------------------------RTSEIYIHRSGRTARANNEG-- 642 (1493)
Q Consensus 623 ----------------------------------------------------------~s~~~yiQR~GRagR~g~~G-- 642 (1493)
.++.+|+||+|||||+|..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~ 445 (1054)
T 1gku_B 366 PQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLT 445 (1054)
T ss_dssp HHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEEC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCc
Confidence 79999999999999988775
Q ss_pred eEEEEecCCcchhhhhhh
Q psy16310 643 LTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 643 ~~i~l~~~~e~~~~~~l~ 660 (1493)
.+++++..+|...+..+.
T Consensus 446 ~g~~~~~~~d~~~~~~l~ 463 (1054)
T 1gku_B 446 KGASFLLEDDSELLSAFI 463 (1054)
T ss_dssp CEEEEEECSCHHHHHHHH
T ss_pred eEEEEEEecCHHHHHHHH
Confidence 478888777776655553
No 67
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=5e-38 Score=418.12 Aligned_cols=355 Identities=21% Similarity=0.203 Sum_probs=207.5
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
-.|+..|+|+|.++|+.+ ..|+|+++++|||||||++|++|+++.+...
T Consensus 243 l~~~~~~r~~Q~~ai~~i-l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~------------------------------ 291 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPA-INGKNALICAPTGSGKTFVSILICEHHFQNM------------------------------ 291 (936)
T ss_dssp -----CCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHTTTTTC------------------------------
T ss_pred ccCCCCCCHHHHHHHHHH-HcCCCEEEEeCCCchHHHHHHHHHHHHHHhc------------------------------
Confidence 457899999999999855 4678999999999999999999998766331
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~ 944 (1493)
....+.++|||+||++|+.|+++.++.++...++++..++|+.....+...+..+++|+|+||++|.+++..+
T Consensus 292 -------~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~ 364 (936)
T 4a2w_A 292 -------PAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG 364 (936)
T ss_dssp -------CSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS
T ss_pred -------cccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC
Confidence 1122567999999999999999999999888899999999998776655555556899999999999999865
Q ss_pred cCccccccceeEEEecccchhccCCChhHHHHHHHHhc---ccCCCCCceEEEEecccccch----H---hHH---hhhc
Q psy16310 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT---MTETSQPRQTFVFSATLTHSL----K---NSL---NLKK 1011 (1493)
Q Consensus 945 ~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~---~~~~~~~~q~ll~SATl~~~~----~---~~~---~~~~ 1011 (1493)
.. ..+.++++|||||||++...+. +..++..+. ........+++++|||+.... . ..+ ....
T Consensus 365 ~~--~~l~~~~liViDEaH~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L 439 (936)
T 4a2w_A 365 TL--TSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL 439 (936)
T ss_dssp SC--CCGGGCSEEEEETGGGCSTTCH---HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH
T ss_pred cc--ccccCCCEEEEECccccCCCcc---HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhc
Confidence 43 2356789999999999887653 333332221 112245689999999996311 1 100 0000
Q ss_pred cCcCcccccCCCchhHHHHhHhccCCCcEEeccccc------------------------------------cc------
Q psy16310 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI------------------------------------GI------ 1049 (1493)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------------------------~~------ 1049 (1493)
... .+.........+...+.............. ..
T Consensus 440 ~~~---~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~ 516 (936)
T 4a2w_A 440 DIQ---AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHW 516 (936)
T ss_dssp TCS---EEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHH
T ss_pred CCc---eeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHH
Confidence 000 000000011111111110000000000000 00
Q ss_pred -------------c--------------------------------------ccceee----------------------
Q psy16310 1050 -------------T--------------------------------------KTLTES---------------------- 1056 (1493)
Q Consensus 1050 -------------~--------------------------------------~~~~~~---------------------- 1056 (1493)
. ..+...
T Consensus 517 l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~ 596 (936)
T 4a2w_A 517 IVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQE 596 (936)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 0 000000
Q ss_pred ---------EEEecccchhhHHHHHHHhC-----CCcEEEEecchhhHHHHHHHHHhc------------CCCccccccC
Q psy16310 1057 ---------KILCKHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTML------------KCSPLPLHAS 1110 (1493)
Q Consensus 1057 ---------~~~~~~~~k~~~l~~~l~~~-----~~~~IVF~~s~~~~~~l~~~L~~~------------~~~~~~lhg~ 1110 (1493)
........|...+..++... +.++||||+++..++.|+..|... |.....+||+
T Consensus 597 ~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~ 676 (936)
T 4a2w_A 597 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTG 676 (936)
T ss_dssp HHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------
T ss_pred HHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCC
Confidence 00000234555566666542 579999999999999999999976 5566677999
Q ss_pred CCHHHHHHHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHH
Q psy16310 1111 MNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1111 m~~~~R~~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~ 1187 (1493)
|++.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.+++|++..+..
T Consensus 677 m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 677 MTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp -----------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999999 999999999999999999999999999999999999999999 998 789999999876654
No 68
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.3e-38 Score=404.58 Aligned_cols=321 Identities=17% Similarity=0.199 Sum_probs=234.8
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhHHHhhcc---C--CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHH
Q psy16310 777 ETIIRALYQKGFKTPTKIQSMVMPSALLA---R--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851 (1493)
Q Consensus 777 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~---~--~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 851 (1493)
+.+.+.+..++| .||++|.++|+.++.+ + ++++++||||||||++|++|++..+..
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------------ 416 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------------ 416 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------------
Confidence 344455678999 9999999999966542 1 599999999999999999999987632
Q ss_pred HHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHH---HHhcC-CC
Q psy16310 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL---RILNK-CP 927 (1493)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~---~~l~~-~~ 927 (1493)
+.+++|++||++||.|+++.+..++...++++..++|+....... ..+.. .+
T Consensus 417 ------------------------g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~ 472 (780)
T 1gm5_A 417 ------------------------GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQI 472 (780)
T ss_dssp ------------------------TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCC
T ss_pred ------------------------CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 246999999999999999999999988899999999999876543 33333 58
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|+|+||+.+.+. ..+.++++||+||||++.... . ..+ .......++++||||+.+......
T Consensus 473 ~IvVgT~~ll~~~--------~~~~~l~lVVIDEaHr~g~~q-----r---~~l--~~~~~~~~vL~mSATp~p~tl~~~ 534 (780)
T 1gm5_A 473 DVVIGTHALIQED--------VHFKNLGLVIIDEQHRFGVKQ-----R---EAL--MNKGKMVDTLVMSATPIPRSMALA 534 (780)
T ss_dssp CEEEECTTHHHHC--------CCCSCCCEEEEESCCCC-------------CCC--CSSSSCCCEEEEESSCCCHHHHHH
T ss_pred CEEEECHHHHhhh--------hhccCCceEEecccchhhHHH-----H---HHH--HHhCCCCCEEEEeCCCCHHHHHHH
Confidence 9999999987431 236789999999999963211 1 111 122346899999999865433221
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH---hCCCcEEEEe
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFC 1084 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IVF~ 1084 (1493)
. .+. .....+.. .......+.. ......+...++..+. ..+++++|||
T Consensus 535 ~--~g~----------------------~~~s~i~~--~p~~r~~i~~---~~~~~~~~~~l~~~i~~~l~~g~qvlVf~ 585 (780)
T 1gm5_A 535 F--YGD----------------------LDVTVIDE--MPPGRKEVQT---MLVPMDRVNEVYEFVRQEVMRGGQAFIVY 585 (780)
T ss_dssp H--TCC----------------------SSCEEECC--CCSSCCCCEE---CCCCSSTHHHHHHHHHHHTTTSCCBCCBC
T ss_pred H--hCC----------------------cceeeeec--cCCCCcceEE---EEeccchHHHHHHHHHHHHhcCCcEEEEe
Confidence 1 000 00001100 0000011111 1111223333444443 3467899999
Q ss_pred cch--------hhHHHHHHHHHh---cCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec
Q psy16310 1085 NSI--------SSVKRLTQLLTM---LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153 (1493)
Q Consensus 1085 ~s~--------~~~~~l~~~L~~---~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d 1153 (1493)
+++ ..+..++..|.. .++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+++
T Consensus 586 ~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d 665 (780)
T 1gm5_A 586 PLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIEN 665 (780)
T ss_dssp CCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCS
T ss_pred cchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeC
Confidence 976 457888888887 478899999999999999999999999999999999999999999999999999
Q ss_pred CCC-ChhHHHHHHhccCCCCCCCeEEEEecCCCHH
Q psy16310 1154 VPR-TSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1154 ~p~-s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~ 1187 (1493)
+|. +...|.||+||+||.|+.|.|++++.+.+..
T Consensus 666 ~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 666 PERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp CSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred CCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 996 6888999999999999999999998854433
No 69
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-37 Score=409.13 Aligned_cols=352 Identities=17% Similarity=0.186 Sum_probs=239.2
Q ss_pred HHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 167 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 167 ~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
...+|. |+++|.++++ ++..+++++++||||||||++|.++++..+.
T Consensus 81 ~~~~f~-L~~~Q~eai~-~l~~g~~vLV~apTGSGKTlva~lai~~~l~------------------------------- 127 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAIS-CIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------------------------- 127 (1010)
T ss_dssp CCCSSC-CCHHHHHHHH-HHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-------------------------------
T ss_pred HhCCCC-CCHHHHHHHH-HHHcCCCEEEECCCCCChHHHHHHHHHHHhc-------------------------------
Confidence 345775 9999999998 5668899999999999999999999887652
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHc
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~ 326 (1493)
.+.++||++||++|+.|+++.|..++. .++.++|+.... ..++|+|+||++|.+++.+
T Consensus 128 -----------~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~ 185 (1010)
T 2xgj_A 128 -----------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR 185 (1010)
T ss_dssp -----------TTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH
T ss_pred -----------cCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc
Confidence 235799999999999999999998764 678889987543 3579999999999998876
Q ss_pred CCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEE
Q psy16310 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406 (1493)
Q Consensus 327 ~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~ 406 (1493)
+.. .+.++++|||||||++.+++++..++.++..+ +...|+++|
T Consensus 186 ~~~---~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l---------------------------------~~~~~il~L 229 (1010)
T 2xgj_A 186 GSE---VMREVAWVIFDEVHYMRDKERGVVWEETIILL---------------------------------PDKVRYVFL 229 (1010)
T ss_dssp TCT---TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS---------------------------------CTTCEEEEE
T ss_pred Ccc---hhhcCCEEEEechhhhcccchhHHHHHHHHhc---------------------------------CCCCeEEEE
Confidence 543 35589999999999999999988888888765 345799999
Q ss_pred eeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhcc--CCcccchhhhhccccccchhhhhhccCCcchhhHHHH
Q psy16310 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484 (1493)
Q Consensus 407 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1493)
|||+++... +..|+... .+..+. ..... +..+. .++.
T Consensus 230 SATi~n~~e------------------------~a~~l~~~~~~~~~vi-~~~~r-p~pl~---------------~~~~ 268 (1010)
T 2xgj_A 230 SATIPNAME------------------------FAEWICKIHSQPCHIV-YTNFR-PTPLQ---------------HYLF 268 (1010)
T ss_dssp ECCCTTHHH------------------------HHHHHHHHHTSCEEEE-EECCC-SSCEE---------------EEEE
T ss_pred cCCCCCHHH------------------------HHHHHHhhcCCCeEEE-ecCCC-cccce---------------EEEE
Confidence 999986432 11111100 000000 00000 00000 0000
Q ss_pred hcC--CCcchhh--------HHHhhhhccCCcccccccccccccccccccccc---c--cCchhhHHHHHHhh-CCCcEE
Q psy16310 485 LQH--PGRTLCE--------EIQDLLNIKSPKIVDLTEKIGITKTLTESKILC---K--HDEKDSYLYYFILQ-HPGRTL 548 (1493)
Q Consensus 485 ~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~k~~~l~~~l~~-~~~~~I 548 (1493)
... ....... .+............+..... ............ . .......+...+.. ...++|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~I 347 (1010)
T 2xgj_A 269 PAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST-DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVI 347 (1010)
T ss_dssp ETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------------------------------CHHHHHHHHHHHHTCCSEE
T ss_pred ecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccc-ccccccccccccccccccchHHHHHHHHHHHhcCCCCEE
Confidence 000 0000000 00000000000000000000 000000000000 0 01223334444443 345999
Q ss_pred EEecchhhHHHHHHHHHhcCC---------------------------------------CccccccCCCHHHHHHHHHH
Q psy16310 549 VFCNSISSVKRLTQLLTMLKC---------------------------------------SPLPLHASMNQRQRLKNLDR 589 (1493)
Q Consensus 549 IF~~s~~~a~~L~~~L~~~~~---------------------------------------~~~~lhg~~~~~~R~~vl~~ 589 (1493)
|||+++..|+.++..|...++ +++.+||+|++.+|..+++.
T Consensus 348 VF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~ 427 (1010)
T 2xgj_A 348 VFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEIL 427 (1010)
T ss_dssp EEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHH
Confidence 999999999999998876443 26779999999999999999
Q ss_pred HhcCCCeEEEEechhhccCCCCCCcEEEE----ecC----CCChHHHHHHHhccccCCC--CCeEEEEecCC
Q psy16310 590 FRDQNNSILLATDVAARGLDIPGIEHVIH----YHV----PRTSEIYIHRSGRTARANN--EGLTVVLIESD 651 (1493)
Q Consensus 590 Fr~g~~~VLVaTdv~~rGlDip~v~~VI~----yd~----P~s~~~yiQR~GRagR~g~--~G~~i~l~~~~ 651 (1493)
|++|.++|||||+++++|||+|++++||+ ||. |.++..|+||+|||||.|. .|.|++++++.
T Consensus 428 F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 428 FQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred HhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 99999999999999999999999999999 999 8999999999999999996 59999999865
No 70
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=6.5e-37 Score=405.96 Aligned_cols=344 Identities=15% Similarity=0.146 Sum_probs=243.6
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.+| .|+|+|.++|+. +..|+|++++||||||||++|++|+...+
T Consensus 36 ~~f-~l~~~Q~~aI~~-il~g~~vlv~apTGsGKTlv~~~~i~~~~---------------------------------- 79 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYH-LEQGDSVFVAAHTSAGKTVVAEYAIAMAH---------------------------------- 79 (997)
T ss_dssp CSS-CCCHHHHHHHHH-HHTTCEEEEECCTTSCSHHHHHHHHHHHH----------------------------------
T ss_pred CCC-CCCHHHHHHHHH-HHcCCCEEEEECCCCcHHHHHHHHHHHHH----------------------------------
Confidence 455 489999999984 55789999999999999999999987654
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~ 945 (1493)
..+.++||++||++|+.|+++.+..++. ++++..++|+... ...++|+|+||++|.+++..+.
T Consensus 80 --------~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~ 142 (997)
T 4a4z_A 80 --------RNMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGA 142 (997)
T ss_dssp --------HTTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTC
T ss_pred --------hcCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCc
Confidence 1345799999999999999999988642 6788999998753 2357999999999999987654
Q ss_pred CccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch--HhHHhhhccCcC-cccccCC
Q psy16310 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL--KNSLNLKKGQSK-SKKVSKG 1022 (1493)
Q Consensus 946 ~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~--~~~~~~~~~~~~-~~~~~~~ 1022 (1493)
. .+.++++|||||||++.+++|...+..++..+ +...|++++|||+++.. ..++........ .......
T Consensus 143 ~---~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l-----~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r 214 (997)
T 4a4z_A 143 D---LIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML-----PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKR 214 (997)
T ss_dssp S---GGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS-----CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSC
T ss_pred h---hhcCCCEEEEECcccccccchHHHHHHHHHhc-----ccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCC
Confidence 3 35689999999999999999999999998887 46789999999998653 222211110000 0000000
Q ss_pred CchhHHHHhHhccCCCcEEeccccc-------------------------------------------------------
Q psy16310 1023 DPSIKRLQDLLNIKSPKIVDLTEKI------------------------------------------------------- 1047 (1493)
Q Consensus 1023 ~~~~~~l~~~~~~~~~~~~~~~~~~------------------------------------------------------- 1047 (1493)
...+. ..+.. ......+....
T Consensus 215 ~~pl~---~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~ 290 (997)
T 4a4z_A 215 PVPLE---INIWA-KKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNS 290 (997)
T ss_dssp SSCEE---EEEEE-TTEEEEEECTTCCBCHHHHHHHHHHHC---------------------------------------
T ss_pred Cccce---EEEec-CCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 00000 00000 00000000000
Q ss_pred ---------------cccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCC---------
Q psy16310 1048 ---------------GITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKC--------- 1102 (1493)
Q Consensus 1048 ---------------~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~--------- 1102 (1493)
............+....+...++.++... .+++||||+|+..|+.++..|...++
T Consensus 291 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 370 (997)
T 4a4z_A 291 TRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQI 370 (997)
T ss_dssp --------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 00000001112223344455666666655 47999999999999999999977655
Q ss_pred ------------------------------CccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEe
Q psy16310 1103 ------------------------------SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152 (1493)
Q Consensus 1103 ------------------------------~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~ 1152 (1493)
++..|||+|++.+|..+++.|+.|.++|||||+++++|||+|+ ..||++
T Consensus 371 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~ 449 (997)
T 4a4z_A 371 HMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFS 449 (997)
T ss_dssp HHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEES
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEe
Confidence 5688999999999999999999999999999999999999999 555554
Q ss_pred cCCC---------ChhHHHHHHhccCCCC--CCCeEEEEec--CCCHHHHHHHHHh
Q psy16310 1153 HVPR---------TSEIYIHRSGRTARAN--NEGLTLVLIE--SDEIPLYIKMFNS 1195 (1493)
Q Consensus 1153 d~p~---------s~~~yiqr~GR~gR~g--~~G~~i~l~~--~~e~~~~~~~~~~ 1195 (1493)
+.|. +..+|+||+|||||.| ..|.+++++. +.+...+..+...
T Consensus 450 ~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~ 505 (997)
T 4a4z_A 450 SIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMG 505 (997)
T ss_dssp CSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHS
T ss_pred ccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcC
Confidence 4444 9999999999999998 5678888873 3456666666443
No 71
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.5e-37 Score=413.60 Aligned_cols=387 Identities=21% Similarity=0.198 Sum_probs=213.8
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
-.|+..|+|+|.++++. +..|+|+|+++|||||||++|++|+++.+...
T Consensus 243 l~~~~~~r~~Q~~ai~~-il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~------------------------------ 291 (936)
T 4a2w_A 243 VYETKKARSYQIELAQP-AINGKNALICAPTGSGKTFVSILICEHHFQNM------------------------------ 291 (936)
T ss_dssp -----CCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC------------------------------
T ss_pred ccCCCCCCHHHHHHHHH-HHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc------------------------------
Confidence 34788999999999984 55789999999999999999999998766321
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcC
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~ 327 (1493)
....+.++|||+||++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|.+++..+
T Consensus 292 -------~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~ 364 (936)
T 4a2w_A 292 -------PAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG 364 (936)
T ss_dssp -------CSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS
T ss_pred -------cccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC
Confidence 0112567999999999999999999999877789999999998777666666667899999999999999865
Q ss_pred CccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEe
Q psy16310 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407 (1493)
Q Consensus 328 ~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~S 407 (1493)
.. ..+.++++|||||||++...+. +..++..+.... .....+..|+++||
T Consensus 365 ~~--~~l~~~~liViDEaH~~~~~~~---~~~i~~~~~~~~-------------------------~~~~~~~~~~l~LS 414 (936)
T 4a2w_A 365 TL--TSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQK-------------------------FNSASQLPQILGLT 414 (936)
T ss_dssp SC--CCGGGCSEEEEETGGGCSTTCH---HHHHHHHHHHHH-------------------------HTTCSCCCEEEEEE
T ss_pred cc--ccccCCCEEEEECccccCCCcc---HHHHHHHHHHHh-------------------------hccCCCcCeEEEec
Confidence 44 1355789999999999976543 333332221100 00113457899999
Q ss_pred eccchhhh-hhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhc
Q psy16310 408 ATLTHSLK-NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 486 (1493)
Q Consensus 408 ATl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1493)
||+...-. .+.. ....+..+......... .........+..++.
T Consensus 415 ATp~~~~~~~l~~----------------~~~~i~~L~~~L~~~~i------------------~~~~~~~~~l~~~~~- 459 (936)
T 4a2w_A 415 ASVGVGNAKNIEE----------------TIEHICSLCSYLDIQAI------------------STVRENIQELQRFMN- 459 (936)
T ss_dssp SCCCCTTCCSHHH----------------HHHHHHHHHHHHTCSEE------------------ECCCSSHHHHHHHSC-
T ss_pred CCcccccchhHHH----------------HHHHHHHHHHhcCCcee------------------ecccccHHHHHHhcc-
Confidence 99953210 0000 00000010000000000 000000011111111
Q ss_pred CCCcch-------h-----------hHHHhhhhc----------cCC---------cccccccc---cccc---------
Q psy16310 487 HPGRTL-------C-----------EEIQDLLNI----------KSP---------KIVDLTEK---IGIT--------- 517 (1493)
Q Consensus 487 ~~~~~~-------~-----------~~~~~~~~~----------~~~---------~~~~~~~~---~~~~--------- 517 (1493)
.+.... . ..+..+... ... .+..+... ....
T Consensus 460 ~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~ 539 (936)
T 4a2w_A 460 KPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRIC 539 (936)
T ss_dssp CCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHH
T ss_pred CCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 111100 0 000000000 000 00000000 0000
Q ss_pred -----------------------------ccccc-------------------------------cccccccCchhhHHH
Q psy16310 518 -----------------------------KTLTE-------------------------------SKILCKHDEKDSYLY 537 (1493)
Q Consensus 518 -----------------------------~~~~~-------------------------------~~~~~~~~~k~~~l~ 537 (1493)
..+.. .......+.|...|.
T Consensus 540 ~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~ 619 (936)
T 4a2w_A 540 RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELV 619 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 00000 000011356777777
Q ss_pred HHHhhC-----CCcEEEEecchhhHHHHHHHHHhc------------CCCccccccCCCHHHHHHHHHHHhc-CCCeEEE
Q psy16310 538 YFILQH-----PGRTLVFCNSISSVKRLTQLLTML------------KCSPLPLHASMNQRQRLKNLDRFRD-QNNSILL 599 (1493)
Q Consensus 538 ~~l~~~-----~~~~IIF~~s~~~a~~L~~~L~~~------------~~~~~~lhg~~~~~~R~~vl~~Fr~-g~~~VLV 599 (1493)
.+|... +.++||||+++.+++.|+.+|... |.....+||+|++.+|..+++.|++ |.++|||
T Consensus 620 ~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLV 699 (936)
T 4a2w_A 620 CILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI 699 (936)
T ss_dssp HHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEE
T ss_pred HHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEE
Confidence 777653 579999999999999999999876 5566677999999999999999999 9999999
Q ss_pred EechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 600 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 600 aTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
||+++++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.+++|++..+......+
T Consensus 700 aT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee~~~~ 757 (936)
T 4a2w_A 700 ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENEKC 757 (936)
T ss_dssp EECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHHHHHHH
T ss_pred EeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHHHHHH
Confidence 99999999999999999999999999999999999 998 68999999988776654443
No 72
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=9.3e-38 Score=409.63 Aligned_cols=355 Identities=18% Similarity=0.153 Sum_probs=225.4
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..|+|+|.++++.++ .|+++++++|||+|||++|++|+++.+....
T Consensus 6 ~~l~~~Q~~~i~~il-~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~--------------------------------- 51 (699)
T 4gl2_A 6 LQLRPYQMEVAQPAL-EGKNIIICLPTGCGKTRVAVYIAKDHLDKKK--------------------------------- 51 (699)
T ss_dssp -CCCHHHHHHHHHHH-SSCCEEECCCTTSCHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred CCccHHHHHHHHHHH-hCCCEEEEcCCCCcHHHHHHHHHHHHHHhcc---------------------------------
Confidence 379999999999655 6789999999999999999999998775421
Q ss_pred hhhccCCCeEEEEEcccHHHHHHH-HHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc--
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQV-QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH-- 945 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~-~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~-- 945 (1493)
....+.++|||+||++|+.|+ ++.++.++.. ++++..++|+.....+...+...++|+|+||++|.+.+....
T Consensus 52 ---~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~ 127 (699)
T 4gl2_A 52 ---KASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENG 127 (699)
T ss_dssp ---HHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC-----
T ss_pred ---ccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccc
Confidence 112335799999999999999 9999998755 589999999876655545555678999999999998873221
Q ss_pred -CccccccceeEEEecccchhccCCChhHHHH-HHHH-hcc-------cCCCCCceEEEEecccccc-------hHhHHh
Q psy16310 946 -FHLTELYKINYLVIDETDRMIESGHFPELKN-ILDR-VTM-------TETSQPRQTFVFSATLTHS-------LKNSLN 1008 (1493)
Q Consensus 946 -~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~-il~~-l~~-------~~~~~~~q~ll~SATl~~~-------~~~~~~ 1008 (1493)
.....+.++++|||||||++...+++..+.. ++.. +.. ....+..+++++|||++.. ....+.
T Consensus 128 ~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~ 207 (699)
T 4gl2_A 128 EDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHIL 207 (699)
T ss_dssp ---CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHH
T ss_pred cccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHH
Confidence 1122456899999999999876555444333 2221 100 0111456899999999963 111111
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCCCcEEecccccc---------------------ccccc--------------
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG---------------------ITKTL-------------- 1053 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~-------------- 1053 (1493)
..........+.........+................... .....
T Consensus 208 ~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 287 (699)
T 4gl2_A 208 KLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEK 287 (699)
T ss_dssp HHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHH
Confidence 0000000000000001111111111110000000000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q psy16310 1054 -------------------------------------------------------------------------------- 1053 (1493)
Q Consensus 1054 -------------------------------------------------------------------------------- 1053 (1493)
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (699)
T 4gl2_A 288 KAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNK 367 (699)
T ss_dssp HHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHH
Confidence
Q ss_pred --eeeE-EEecccchhhHHHHHHHhC------CCcEEEEecchhhHHHHHHHHHhc------CCCccccccC--------
Q psy16310 1054 --TESK-ILCKHDEKDSYLYYFILQH------PGRTLVFCNSISSVKRLTQLLTML------KCSPLPLHAS-------- 1110 (1493)
Q Consensus 1054 --~~~~-~~~~~~~k~~~l~~~l~~~------~~~~IVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~-------- 1110 (1493)
.... .......|...+..++... ++++||||+++..++.++..|... |+.+..+||+
T Consensus 368 ~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~ 447 (699)
T 4gl2_A 368 MLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKP 447 (699)
T ss_dssp HHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCC
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCC
Confidence 0000 0000122333334444332 689999999999999999999987 8999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCC
Q psy16310 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184 (1493)
Q Consensus 1111 m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 1184 (1493)
|++.+|..++++|++|+++|||||+++++|||+|+|++||+||+|.|+..|+||+||+||.| .+++++.+.
T Consensus 448 ~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~ 518 (699)
T 4gl2_A 448 MTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHS 518 (699)
T ss_dssp CCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEES
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999976654 555555443
No 73
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.8e-38 Score=396.22 Aligned_cols=315 Identities=16% Similarity=0.132 Sum_probs=230.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHH
Q psy16310 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 852 (1493)
Q Consensus 773 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 852 (1493)
+++++.++++|... +..|+|+|+.++| .+..++|++++||||||||++|++|+++.+..
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~-~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~------------------- 213 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDED-IFRKKRLTIMDLHPGAGKTKRILPSIVREALK------------------- 213 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGG-GGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------------------
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHH-HHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------------------
Confidence 55666666666543 5889999999987 67788999999999999999999999987743
Q ss_pred HHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEE
Q psy16310 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 932 (1493)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~ 932 (1493)
.+.++|||+|||+||.|+++.+.. ..+. ..++.. . .....+..+.++
T Consensus 214 ----------------------~~~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~l-~---~~~tp~~~i~~~ 260 (618)
T 2whx_A 214 ----------------------RRLRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAV-K---SDHTGREIVDLM 260 (618)
T ss_dssp ----------------------TTCCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTS-S---CCCCSSSCEEEE
T ss_pred ----------------------CCCeEEEEcChHHHHHHHHHHhcC------Ccee-Eecccc-e---eccCCCceEEEE
Confidence 235799999999999999988762 3333 222110 0 001123357778
Q ss_pred CcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhcc
Q psy16310 933 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012 (1493)
Q Consensus 933 TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~ 1012 (1493)
|.+.+...+.... .+.++++|||||||++ +.+|...+..++..+. ...+|+++||||++..+..+..
T Consensus 261 t~~~l~~~l~~~~----~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~----~~~~q~il~SAT~~~~~~~~~~---- 327 (618)
T 2whx_A 261 CHATFTTRLLSST----RVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE----MGEAAAIFMTATPPGSTDPFPQ---- 327 (618)
T ss_dssp EHHHHHHHHHHCS----SCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH----HTSCEEEEECSSCTTCCCSSCC----
T ss_pred ChHHHHHHHhccc----cccCCeEEEEECCCCC-CccHHHHHHHHHHHhc----ccCccEEEEECCCchhhhhhhc----
Confidence 8888876665432 3678999999999998 6677777777777663 1568999999999865432110
Q ss_pred CcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHH
Q psy16310 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKR 1092 (1493)
Q Consensus 1013 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~ 1092 (1493)
..+..+.+.... +. .+...+...+....+++||||+|+..|+.
T Consensus 328 -----------------------~~~~~~~v~~~~-------------~~-~~~~~ll~~l~~~~~~~LVF~~s~~~a~~ 370 (618)
T 2whx_A 328 -----------------------SNSPIEDIEREI-------------PE-RSWNTGFDWITDYQGKTVWFVPSIKAGND 370 (618)
T ss_dssp -----------------------CSSCEEEEECCC-------------CS-SCCSSSCHHHHHCCSCEEEECSSHHHHHH
T ss_pred -----------------------cCCceeeecccC-------------CH-HHHHHHHHHHHhCCCCEEEEECChhHHHH
Confidence 111112111110 00 11112233445568899999999999999
Q ss_pred HHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEE--------------------EEe
Q psy16310 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV--------------------IHY 1152 (1493)
Q Consensus 1093 l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~V--------------------I~~ 1152 (1493)
++..|...++.+..+||+ +|.++++.|++|+.+||||||++++|||+| +++| |+|
T Consensus 371 l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~ 445 (618)
T 2whx_A 371 IANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAG 445 (618)
T ss_dssp HHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEE
T ss_pred HHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcc
Confidence 999999999999999985 788899999999999999999999999997 9988 888
Q ss_pred cCCCChhHHHHHHhccCCCCC-CCeEEEEec---CCCHHHHHHHHHhc
Q psy16310 1153 HVPRTSEIYIHRSGRTARANN-EGLTLVLIE---SDEIPLYIKMFNSL 1196 (1493)
Q Consensus 1153 d~p~s~~~yiqr~GR~gR~g~-~G~~i~l~~---~~e~~~~~~~~~~~ 1196 (1493)
++|.+.++|+||+|||||+|. .|.|++|++ +.+...+..+...+
T Consensus 446 d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 446 PIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred cccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 889999999999999999965 999999997 67766666655543
No 74
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.3e-37 Score=380.60 Aligned_cols=289 Identities=18% Similarity=0.171 Sum_probs=211.4
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
|+..|+|+|+ +||.++.++..++++||||||||++|++|++..+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------------------------------- 46 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------------------------------- 46 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---------------------------------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---------------------------------
Confidence 7899999985 798666554445999999999999999999976632
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
.+.++||++|||+||.|+++.+.. ..+....+.... ....+..|.++|++.+...+...
T Consensus 47 --------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-- 105 (451)
T 2jlq_A 47 --------RRLRTLILAPTRVVAAEMEEALRG------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-- 105 (451)
T ss_dssp --------TTCCEEEEESSHHHHHHHHHHTTT------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--
T ss_pred --------cCCcEEEECCCHHHHHHHHHHhcC------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--
Confidence 235799999999999999998752 333222221110 11234579999999998887643
Q ss_pred ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchh
Q psy16310 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026 (1493)
Q Consensus 947 ~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1493)
..+.++++|||||||++ +.++...+..+.... .....|+++||||++.......
T Consensus 106 --~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~----~~~~~~~i~~SAT~~~~~~~~~------------------- 159 (451)
T 2jlq_A 106 --TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV----EMGEAAAIFMTATPPGSTDPFP------------------- 159 (451)
T ss_dssp --SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHH----HTTSCEEEEECSSCTTCCCSSC-------------------
T ss_pred --ccccCCCEEEEeCCccC-CcchHHHHHHHHHhh----cCCCceEEEEccCCCccchhhh-------------------
Confidence 24678999999999987 333322222222222 1356899999999986432211
Q ss_pred HHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccc
Q psy16310 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 1106 (1493)
Q Consensus 1027 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~ 1106 (1493)
...+..+...... +. .....+..++....+++||||+|+..|+.++..|...|+.+..
T Consensus 160 --------~~~~~~~~~~~~~--p~------------~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~ 217 (451)
T 2jlq_A 160 --------QSNSPIEDIEREI--PE------------RSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ 217 (451)
T ss_dssp --------CCSSCEEEEECCC--CS------------SCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEE
T ss_pred --------cCCCceEecCccC--Cc------------hhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEE
Confidence 0111111111000 00 0001123345566789999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec--------------------CCCChhHHHHHHh
Q psy16310 1107 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH--------------------VPRTSEIYIHRSG 1166 (1493)
Q Consensus 1107 lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d--------------------~p~s~~~yiqr~G 1166 (1493)
+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++||||| .|.+..+|+||+|
T Consensus 218 lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~G 292 (451)
T 2jlq_A 218 LSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRG 292 (451)
T ss_dssp ECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHT
T ss_pred CCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhcc
Confidence 999864 57899999999999999999999999999 9999999 9999999999999
Q ss_pred ccCCCCC-CCeEEEEecC
Q psy16310 1167 RTARANN-EGLTLVLIES 1183 (1493)
Q Consensus 1167 R~gR~g~-~G~~i~l~~~ 1183 (1493)
||||.|+ .|.+++|+..
T Consensus 293 RaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 293 RIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp TSSCCTTCCCEEEEECSC
T ss_pred ccCCCCCCCccEEEEeCC
Confidence 9999998 8999888643
No 75
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=404.35 Aligned_cols=411 Identities=17% Similarity=0.138 Sum_probs=228.1
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+|+|.++++. +..|+|+|+++|||||||++|++|+++.+....
T Consensus 7 ~l~~~Q~~~i~~-il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---------------------------------- 51 (699)
T 4gl2_A 7 QLRPYQMEVAQP-ALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKK---------------------------------- 51 (699)
T ss_dssp CCCHHHHHHHHH-HHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred CccHHHHHHHHH-HHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcc----------------------------------
Confidence 699999999985 556889999999999999999999998875421
Q ss_pred hhcccCceEEEEEcccHHHHHHH-HHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCC---
Q psy16310 253 VKKTRNKLYALILAPTRELAIQV-QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH--- 328 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi-~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~--- 328 (1493)
....+.++|||+||++|+.|+ .+.+..++.. ++++..++|+......+..+...++|+|+||++|.+.+.+..
T Consensus 52 --~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~ 128 (699)
T 4gl2_A 52 --KASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGE 128 (699)
T ss_dssp --HHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC------
T ss_pred --ccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhcccccc
Confidence 112335799999999999999 9999998764 589999999987665555666778999999999998874321
Q ss_pred ccccccccccEEEEecCchhhhcCChhhHHH-HHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEe
Q psy16310 329 FHLTELYKINYLVIDETDRMIESGHFPELKN-ILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407 (1493)
Q Consensus 329 ~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~S 407 (1493)
.....+.++++|||||||++...+++..+.. .+...... ...........+..+++++|
T Consensus 129 ~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~il~lT 188 (699)
T 4gl2_A 129 DAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKN--------------------NRLKKENKPVIPLPQILGLT 188 (699)
T ss_dssp --CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHH--------------------HHHHC----CCCCCEEEEEC
T ss_pred ccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcc--------------------cccccccccCCCCCEEEEec
Confidence 1122355899999999999866555544333 22111000 00000001112446899999
Q ss_pred eccchh--------hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchh
Q psy16310 408 ATLTHS--------LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 479 (1493)
Q Consensus 408 ATl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1493)
||++.. ...+..+... .....+.........+...+............ .....+... + . .....
T Consensus 189 ATp~~~~~~~~~~~~~~i~~l~~~-l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~--~~~~~~~~~--l-~--~l~~~ 260 (699)
T 4gl2_A 189 ASPGVGGATKQAKAEEHILKLCAN-LDAFTIKTVKENLDQLKNQIQEPCKKFAIADA--TREDPFKEK--L-L--EIMTR 260 (699)
T ss_dssp SCCCCCSCCSHHHHHHHHHHHHHH-HTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-------CHHHH--H-H--HHHHH
T ss_pred ccccccccccHHHHHHHHHHHHhh-cCCCEEEeecCchHHHhhhcCCCceEEEEccc--ccCChHHHH--H-H--HHHHH
Confidence 999863 1111110000 00000000000001111111000000000000 000000000 0 0 00000
Q ss_pred hHHHHhcCCCcchhh-HHHhhhhc--------cCCc-----------------------------cccccccc-------
Q psy16310 480 LYYFILQHPGRTLCE-EIQDLLNI--------KSPK-----------------------------IVDLTEKI------- 514 (1493)
Q Consensus 480 ~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~-----------------------------~~~~~~~~------- 514 (1493)
+...+...+...... ........ .... +.......
T Consensus 261 i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 340 (699)
T 4gl2_A 261 IQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAV 340 (699)
T ss_dssp HHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 000000001111000 00000000 0000 00000000
Q ss_pred ---------cccc--------------cccccc-cccccCchhhHHHHHHhhC------CCcEEEEecchhhHHHHHHHH
Q psy16310 515 ---------GITK--------------TLTESK-ILCKHDEKDSYLYYFILQH------PGRTLVFCNSISSVKRLTQLL 564 (1493)
Q Consensus 515 ---------~~~~--------------~~~~~~-~~~~~~~k~~~l~~~l~~~------~~~~IIF~~s~~~a~~L~~~L 564 (1493)
.... .+.... .....+.|...|..++... ++++||||+++.+++.|+..|
T Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L 420 (699)
T 4gl2_A 341 IEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWI 420 (699)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHH
Confidence 0000 000000 0000233444444444432 689999999999999999999
Q ss_pred Hhc------CCCccccccC--------CCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 565 TML------KCSPLPLHAS--------MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 565 ~~~------~~~~~~lhg~--------~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
... |+.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.|+..|+|
T Consensus 421 ~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Q 500 (699)
T 4gl2_A 421 TENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQ 500 (699)
T ss_dssp HSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHH
T ss_pred HhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHH
Confidence 987 8999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCeEEEEecCCc
Q psy16310 631 RSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 631 R~GRagR~g~~G~~i~l~~~~e 652 (1493)
|+|||||.| .+++++.+.+
T Consensus 501 r~GRArr~g---~~~~l~~~~~ 519 (699)
T 4gl2_A 501 ARGRARADE---STYVLVAHSG 519 (699)
T ss_dssp HHTTSCSSS---CEEEEEEESS
T ss_pred HcCCCCCCC---ceEEEEEeCC
Confidence 999966544 4444444433
No 76
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.4e-36 Score=374.78 Aligned_cols=345 Identities=21% Similarity=0.268 Sum_probs=244.2
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.|+|+|.++++.++ .+ ++++++|||+|||++++++++..+.
T Consensus 9 ~l~~~Q~~~i~~~~-~~-~~ll~~~tG~GKT~~~~~~~~~~~~------------------------------------- 49 (494)
T 1wp9_A 9 QPRIYQEVIYAKCK-ET-NCLIVLPTGLGKTLIAMMIAEYRLT------------------------------------- 49 (494)
T ss_dssp CCCHHHHHHHHHGG-GS-CEEEECCTTSCHHHHHHHHHHHHHH-------------------------------------
T ss_pred CccHHHHHHHHHHh-hC-CEEEEcCCCCCHHHHHHHHHHHHHh-------------------------------------
Confidence 68999999998655 55 9999999999999999999987653
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~ 949 (1493)
..+.++|||+||++|+.|+.+.+.+++...+.++..++|+.......... ..++|+|+||++|...+..+..
T Consensus 50 ----~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~--- 121 (494)
T 1wp9_A 50 ----KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRI--- 121 (494)
T ss_dssp ----HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSC---
T ss_pred ----cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCc---
Confidence 12346999999999999999999998755556899999988876544333 3569999999999998876543
Q ss_pred cccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhc--cCcCcccc--------
Q psy16310 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK--GQSKSKKV-------- 1019 (1493)
Q Consensus 950 ~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~--~~~~~~~~-------- 1019 (1493)
.+.++++|||||||++.....+..+...+... ....+++++|||+............ ........
T Consensus 122 ~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~-----~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 196 (494)
T 1wp9_A 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ-----AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVR 196 (494)
T ss_dssp CTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH-----CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTG
T ss_pred chhhceEEEEECCcccCCCCcHHHHHHHHHhc-----CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHH
Confidence 35578999999999998665544444444433 2567899999999854322211111 00000000
Q ss_pred ------------cCCCchhHHHHhHh--------------ccCCCcEEecccc-----------------cccc------
Q psy16310 1020 ------------SKGDPSIKRLQDLL--------------NIKSPKIVDLTEK-----------------IGIT------ 1050 (1493)
Q Consensus 1020 ------------~~~~~~~~~l~~~~--------------~~~~~~~~~~~~~-----------------~~~~------ 1050 (1493)
.........+...+ +...+....+... ....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (494)
T 1wp9_A 197 PYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYH 276 (494)
T ss_dssp GGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHH
T ss_pred HhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 00001111110000 0000000000000 0000
Q ss_pred ---------------c---cceee-----------------------------------EEEecccchhhHHHHHHHh--
Q psy16310 1051 ---------------K---TLTES-----------------------------------KILCKHDEKDSYLYYFILQ-- 1075 (1493)
Q Consensus 1051 ---------------~---~~~~~-----------------------------------~~~~~~~~k~~~l~~~l~~-- 1075 (1493)
. .+... ........|...+..++..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 356 (494)
T 1wp9_A 277 AMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQL 356 (494)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence 0 00000 0000234456666666654
Q ss_pred ---CCCcEEEEecchhhHHHHHHHHHhcCCCcccccc--------CCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCC
Q psy16310 1076 ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA--------SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144 (1493)
Q Consensus 1076 ---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg--------~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip 1144 (1493)
.++++||||+++..++.++..|...|+.+..+|| +|++.+|..++++|++|+.+|||||+++++|+|+|
T Consensus 357 ~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~ 436 (494)
T 1wp9_A 357 QRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVP 436 (494)
T ss_dssp HHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGST
T ss_pred ccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCch
Confidence 4789999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHH
Q psy16310 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1145 ~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~ 1187 (1493)
++++||+||+|.++..|+||+||+||.|. |.++.|+.++...
T Consensus 437 ~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 437 EVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp TCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred hCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 99999999999999999999999999998 9999999988754
No 77
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-35 Score=373.92 Aligned_cols=399 Identities=20% Similarity=0.239 Sum_probs=247.0
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+|+|.++++.++ .+ ++|+++|||+|||++|+++++..+.
T Consensus 9 ~l~~~Q~~~i~~~~-~~-~~ll~~~tG~GKT~~~~~~~~~~~~------------------------------------- 49 (494)
T 1wp9_A 9 QPRIYQEVIYAKCK-ET-NCLIVLPTGLGKTLIAMMIAEYRLT------------------------------------- 49 (494)
T ss_dssp CCCHHHHHHHHHGG-GS-CEEEECCTTSCHHHHHHHHHHHHHH-------------------------------------
T ss_pred CccHHHHHHHHHHh-hC-CEEEEcCCCCCHHHHHHHHHHHHHh-------------------------------------
Confidence 59999999998554 55 9999999999999999999987663
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
..+.++|||+||++|+.|+.+.+..+....+.++..++|+......... ...++|+|+||+.|.+.+..+...
T Consensus 50 ----~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~-- 122 (494)
T 1wp9_A 50 ----KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRIS-- 122 (494)
T ss_dssp ----HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCC--
T ss_pred ----cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcc--
Confidence 1234699999999999999999999875556689999999877654333 335699999999999988765443
Q ss_pred ccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccch
Q psy16310 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~ 412 (1493)
+.++++|||||||++.+.+.+..+...+... ....+++++|||+..
T Consensus 123 -~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~l~lTaTp~~ 168 (494)
T 1wp9_A 123 -LEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ---------------------------------AKNPLVIGLTASPGS 168 (494)
T ss_dssp -TTSCSEEEEETGGGCSTTCHHHHHHHHHHHH---------------------------------CSSCCEEEEESCSCS
T ss_pred -hhhceEEEEECCcccCCCCcHHHHHHHHHhc---------------------------------CCCCeEEEEecCCCC
Confidence 4578999999999997654444444443322 234689999999974
Q ss_pred hhhhhhhhhcccc--ccccccCCCchhhhHHhhhhccCCccc--chhhhhc-cccccc-----------hhhhhhccCC-
Q psy16310 413 SLKNSLNLKKGQS--KSKKVSKGDPSIKRLQDLLNIKSPKIV--DLTEKIG-ITKTLT-----------ESKILCKHDE- 475 (1493)
Q Consensus 413 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~-----------~~~~~~~~~~- 475 (1493)
....+..+..... .........+. +...+........ ....... +...+. ..........
T Consensus 169 ~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (494)
T 1wp9_A 169 TPEKIMEVINNLGIEHIEYRSENSPD---VRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPD 245 (494)
T ss_dssp SHHHHHHHHHHTTCCEEEECCTTSTT---TGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTT
T ss_pred CcHHHHHHHHhcChheeeccCCCcHH---HHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 4322221111000 00000000000 0000000000000 0000000 000000 0000000000
Q ss_pred -cc-------hhhHHHHhcCCCc---------------------------chhhHHHhhhhccCCccccccccccccccc
Q psy16310 476 -KD-------SYLYYFILQHPGR---------------------------TLCEEIQDLLNIKSPKIVDLTEKIGITKTL 520 (1493)
Q Consensus 476 -~~-------~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1493)
.. ..+...+...... .....+..+....................+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (494)
T 1wp9_A 246 IPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 325 (494)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHH
T ss_pred cchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHH
Confidence 00 0000000000000 000000000000000000000000000000
Q ss_pred ccc-------ccccccCchhhHHHHHHhh-----CCCcEEEEecchhhHHHHHHHHHhcCCCcccccc--------CCCH
Q psy16310 521 TES-------KILCKHDEKDSYLYYFILQ-----HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA--------SMNQ 580 (1493)
Q Consensus 521 ~~~-------~~~~~~~~k~~~l~~~l~~-----~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg--------~~~~ 580 (1493)
... ......+.|...+..++.. .+.++||||+++..+..++..|...++.+..+|| +|+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 405 (494)
T 1wp9_A 326 KKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQ 405 (494)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------C
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCH
Confidence 000 0111455677777777765 4689999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 581 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 581 ~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
.+|..+++.|++|..+|||||+++++|||+|+|++||+||+|.|+..|+||+||+||.|. |.++.|+++++...
T Consensus 406 ~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 406 REQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp CHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred HHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 99999999876543
No 78
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.8e-37 Score=375.35 Aligned_cols=290 Identities=18% Similarity=0.176 Sum_probs=207.8
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|+..|+|+|+ +||.++.++.+++++||||||||++|++|++.++..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------------------------------- 46 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------------------------------- 46 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---------------------------------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---------------------------------
Confidence 7889999985 798666444444999999999999999999977642
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
.+.++||++|||+||.|+++.+.. +.+....+.... ....+..|.++|++.|...+...
T Consensus 47 --------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-- 105 (451)
T 2jlq_A 47 --------RRLRTLILAPTRVVAAEMEEALRG------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-- 105 (451)
T ss_dssp --------TTCCEEEEESSHHHHHHHHHHTTT------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--
T ss_pred --------cCCcEEEECCCHHHHHHHHHHhcC------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--
Confidence 235799999999999999998742 233222221111 12334579999999998887644
Q ss_pred cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
..+.++++|||||||++ +..+...+..+.... ..+.+|+++||||
T Consensus 106 --~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~--------------------------------~~~~~~~i~~SAT 150 (451)
T 2jlq_A 106 --TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV--------------------------------EMGEAAAIFMTAT 150 (451)
T ss_dssp --SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHH--------------------------------HTTSCEEEEECSS
T ss_pred --ccccCCCEEEEeCCccC-CcchHHHHHHHHHhh--------------------------------cCCCceEEEEccC
Confidence 23668999999999977 332222222222111 0335799999999
Q ss_pred cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCC
Q psy16310 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489 (1493)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1493)
++..+..+.. ..+....... ..+.
T Consensus 151 ~~~~~~~~~~---------------------------~~~~~~~~~~-----------------------------~~p~ 174 (451)
T 2jlq_A 151 PPGSTDPFPQ---------------------------SNSPIEDIER-----------------------------EIPE 174 (451)
T ss_dssp CTTCCCSSCC---------------------------CSSCEEEEEC-----------------------------CCCS
T ss_pred CCccchhhhc---------------------------CCCceEecCc-----------------------------cCCc
Confidence 9864432110 0000000000 0000
Q ss_pred cchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCC
Q psy16310 490 RTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569 (1493)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~ 569 (1493)
. ....+..++....+++||||+++..++.++..|...++
T Consensus 175 ~-----------------------------------------~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~ 213 (451)
T 2jlq_A 175 R-----------------------------------------SWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGK 213 (451)
T ss_dssp S-----------------------------------------CCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTC
T ss_pred h-----------------------------------------hhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCC
Confidence 0 00001122344567999999999999999999999999
Q ss_pred CccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec--------------------CCCChHHHH
Q psy16310 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH--------------------VPRTSEIYI 629 (1493)
Q Consensus 570 ~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd--------------------~P~s~~~yi 629 (1493)
.+..+||.+. ..+++.|++|+.+|||||+++++|||+|+ ++||+|| +|.+..+|+
T Consensus 214 ~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~ 288 (451)
T 2jlq_A 214 RVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAA 288 (451)
T ss_dssp CEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHH
T ss_pred eEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHH
Confidence 9999999764 57899999999999999999999999999 9999999 999999999
Q ss_pred HHHhccccCCC-CCeEEEEecCC
Q psy16310 630 HRSGRTARANN-EGLTVVLIESD 651 (1493)
Q Consensus 630 QR~GRagR~g~-~G~~i~l~~~~ 651 (1493)
||+|||||.|. .|.|++++..+
T Consensus 289 Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 289 QRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp HHHTTSSCCTTCCCEEEEECSCC
T ss_pred HhccccCCCCCCCccEEEEeCCc
Confidence 99999999998 89998887543
No 79
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-36 Score=387.78 Aligned_cols=326 Identities=17% Similarity=0.216 Sum_probs=230.8
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhcc-----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHH
Q psy16310 160 ETIIRALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234 (1493)
Q Consensus 160 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 234 (1493)
+.+.+.+..++| .||++|.++++.++.+ .+|++++||||||||++|++|++..+..
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------------ 416 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------------ 416 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------------
Confidence 445556678899 8999999999855532 1599999999999999999999977632
Q ss_pred HHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHH---HHhcC-CC
Q psy16310 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL---RILNK-CP 310 (1493)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~---~~l~~-~~ 310 (1493)
+.+++||+||++||.|+++.+..+....++++..++|+....... ..+.. .+
T Consensus 417 ------------------------g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~ 472 (780)
T 1gm5_A 417 ------------------------GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQI 472 (780)
T ss_dssp ------------------------TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCC
T ss_pred ------------------------CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 356999999999999999999999888899999999998876543 33333 58
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||+.|.+ .. .+.++++|||||||++..... ..+
T Consensus 473 ~IvVgT~~ll~~-----~~---~~~~l~lVVIDEaHr~g~~qr--------~~l-------------------------- 510 (780)
T 1gm5_A 473 DVVIGTHALIQE-----DV---HFKNLGLVIIDEQHRFGVKQR--------EAL-------------------------- 510 (780)
T ss_dssp CEEEECTTHHHH-----CC---CCSCCCEEEEESCCCC-------------CCC--------------------------
T ss_pred CEEEECHHHHhh-----hh---hccCCceEEecccchhhHHHH--------HHH--------------------------
Confidence 999999998744 12 356889999999998621110 000
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
.......++++||||+.+......... +. ....... .+.
T Consensus 511 ----~~~~~~~~vL~mSATp~p~tl~~~~~g------------~~------------~~s~i~~-----~p~-------- 549 (780)
T 1gm5_A 511 ----MNKGKMVDTLVMSATPIPRSMALAFYG------------DL------------DVTVIDE-----MPP-------- 549 (780)
T ss_dssp ----CSSSSCCCEEEEESSCCCHHHHHHHTC------------CS------------SCEEECC-----CCS--------
T ss_pred ----HHhCCCCCEEEEeCCCCHHHHHHHHhC------------Cc------------ceeeeec-----cCC--------
Confidence 001235789999999865432211000 00 0000000 000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHh---hCCCcE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHPGRT 547 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~ 547 (1493)
.. ..+. .... ...+...+...+. ..++++
T Consensus 550 ---~r------------------------------------------~~i~--~~~~-~~~~~~~l~~~i~~~l~~g~qv 581 (780)
T 1gm5_A 550 ---GR------------------------------------------KEVQ--TMLV-PMDRVNEVYEFVRQEVMRGGQA 581 (780)
T ss_dssp ---SC------------------------------------------CCCE--ECCC-CSSTHHHHHHHHHHHTTTSCCB
T ss_pred ---CC------------------------------------------cceE--EEEe-ccchHHHHHHHHHHHHhcCCcE
Confidence 00 0000 0000 0111112222222 235789
Q ss_pred EEEecch--------hhHHHHHHHHHh---cCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEE
Q psy16310 548 LVFCNSI--------SSVKRLTQLLTM---LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616 (1493)
Q Consensus 548 IIF~~s~--------~~a~~L~~~L~~---~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~V 616 (1493)
+|||++. ..+..+++.|.. .++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+|++|
T Consensus 582 lVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~V 661 (780)
T 1gm5_A 582 FIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVM 661 (780)
T ss_dssp CCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEE
T ss_pred EEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEE
Confidence 9999965 457788888877 37889999999999999999999999999999999999999999999999
Q ss_pred EEecCCC-ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 617 IHYHVPR-TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 617 I~yd~P~-s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
|+||+|. +...|+||+||+||.|..|.|++++++.+......+
T Consensus 662 Ii~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 662 VIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp EBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 9999996 788999999999999999999999985444433343
No 80
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=9.2e-36 Score=394.94 Aligned_cols=359 Identities=15% Similarity=0.141 Sum_probs=237.0
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.+|+ |+++|.++|+ .+..|+|++++||||||||++|++++...+.
T Consensus 36 ~~f~-l~~~Q~~aI~-~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--------------------------------- 80 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVY-HLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--------------------------------- 80 (997)
T ss_dssp CSSC-CCHHHHHHHH-HHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---------------------------------
T ss_pred CCCC-CCHHHHHHHH-HHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---------------------------------
Confidence 4664 8999999998 5667899999999999999999999876541
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~ 328 (1493)
.+.++||++||++|+.|+++.+..+.. ++.+..++|+... ...++|+|+||++|.+++....
T Consensus 81 ---------~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~ 142 (997)
T 4a4z_A 81 ---------NMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGA 142 (997)
T ss_dssp ---------TTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTC
T ss_pred ---------cCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCc
Confidence 346799999999999999999988653 6889999998753 2347999999999999987654
Q ss_pred ccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEee
Q psy16310 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 408 (1493)
Q Consensus 329 ~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SA 408 (1493)
.. +.++++|||||||++.++++...++.++..+ +...|++++||
T Consensus 143 ~~---l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l---------------------------------~~~v~iIlLSA 186 (997)
T 4a4z_A 143 DL---IRDVEFVIFDEVHYVNDQDRGVVWEEVIIML---------------------------------PQHVKFILLSA 186 (997)
T ss_dssp SG---GGGEEEEEECCTTCCCTTCTTCCHHHHHHHS---------------------------------CTTCEEEEEEC
T ss_pred hh---hcCCCEEEEECcccccccchHHHHHHHHHhc---------------------------------ccCCCEEEEcC
Confidence 43 4589999999999999999999999888766 34579999999
Q ss_pred ccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccC-CcccchhhhhccccccchhhhhhccCCcchhhHHHHhcC
Q psy16310 409 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 487 (1493)
Q Consensus 409 Tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (1493)
|+++... + .+|+.... ..+..+..... +..+... +... . . ......
T Consensus 187 T~~n~~e-f-----------------------~~~l~~~~~~~~~vi~~~~r-~~pl~~~-v~~~--~-~----~~~~~~ 233 (997)
T 4a4z_A 187 TVPNTYE-F-----------------------ANWIGRTKQKNIYVISTPKR-PVPLEIN-IWAK--K-E----LIPVIN 233 (997)
T ss_dssp CCTTHHH-H-----------------------HHHHHHHHTCCEEEEECSSC-SSCEEEE-EEET--T-E----EEEEEC
T ss_pred CCCChHH-H-----------------------HHHHhcccCCceEEEecCCC-CccceEE-EecC--C-c----chhccc
Confidence 9986431 1 12221100 00000000000 0000000 0000 0 0 000011
Q ss_pred CCcchhh-HHHh---hhhccCCccc-cc------c---c--------cc----------------------c-ccccccc
Q psy16310 488 PGRTLCE-EIQD---LLNIKSPKIV-DL------T---E--------KI----------------------G-ITKTLTE 522 (1493)
Q Consensus 488 ~~~~~~~-~~~~---~~~~~~~~~~-~~------~---~--------~~----------------------~-~~~~~~~ 522 (1493)
....... .+.. .......... .. . . .. . .......
T Consensus 234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 313 (997)
T 4a4z_A 234 QNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKF 313 (997)
T ss_dssp TTCCBCHHHHHHHHHHHC--------------------------------------------------------------
T ss_pred chhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111000 0000 0000000000 00 0 0 00 0 0000000
Q ss_pred cccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCC--------------------------------
Q psy16310 523 SKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKC-------------------------------- 569 (1493)
Q Consensus 523 ~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~-------------------------------- 569 (1493)
....+....+...+...+... ..++||||+++..|+.++..|...++
T Consensus 314 ~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~ 393 (997)
T 4a4z_A 314 FTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILK 393 (997)
T ss_dssp ---CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHH
T ss_pred ccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHH
Confidence 111222334455566666655 47999999999999999999976554
Q ss_pred -------CccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE--------EecCCCChHHHHHHHhc
Q psy16310 570 -------SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI--------HYHVPRTSEIYIHRSGR 634 (1493)
Q Consensus 570 -------~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI--------~yd~P~s~~~yiQR~GR 634 (1493)
++..+||+|++.+|..+++.|++|.++|||||+++++|||+|++.+|+ +++.|.++.+|+||+||
T Consensus 394 l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GR 473 (997)
T 4a4z_A 394 TRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGR 473 (997)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGG
T ss_pred HHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcc
Confidence 578899999999999999999999999999999999999999955555 23344599999999999
Q ss_pred cccCC--CCCeEEEEec
Q psy16310 635 TARAN--NEGLTVVLIE 649 (1493)
Q Consensus 635 agR~g--~~G~~i~l~~ 649 (1493)
|||.| ..|.|++++.
T Consensus 474 AGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 474 AGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp GCCTTTCSSEEEEEECC
T ss_pred cccCCCCcceEEEEecC
Confidence 99998 5688888884
No 81
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.3e-37 Score=387.45 Aligned_cols=311 Identities=16% Similarity=0.136 Sum_probs=224.1
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHH
Q psy16310 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 235 (1493)
Q Consensus 156 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 235 (1493)
+++++.+.+++... +..|+|+|+.++| ++..++|+|++||||||||++|++|+++.+..
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~-~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~------------------- 213 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDED-IFRKKRLTIMDLHPGAGKTKRILPSIVREALK------------------- 213 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGG-GGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------------------
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHH-HHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------------------
Confidence 45666666555443 5789999999887 67789999999999999999999999988743
Q ss_pred HHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEe
Q psy16310 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 315 (1493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~ 315 (1493)
.+.++|||+|||+||.|+++.+.. +.+. +.+..-. ..-..+..+.++
T Consensus 214 ----------------------~~~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~ 260 (618)
T 2whx_A 214 ----------------------RRLRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLM 260 (618)
T ss_dssp ----------------------TTCCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEE
T ss_pred ----------------------CCCeEEEEcChHHHHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEEE
Confidence 235799999999999999988752 2232 2221100 011123457788
Q ss_pred CcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhcccc
Q psy16310 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395 (1493)
Q Consensus 316 TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1493)
|.+.|...+.... .+.++++|||||||++ +.++...+..++..+.
T Consensus 261 t~~~l~~~l~~~~----~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~------------------------------ 305 (618)
T 2whx_A 261 CHATFTTRLLSST----RVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE------------------------------ 305 (618)
T ss_dssp EHHHHHHHHHHCS----SCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH------------------------------
T ss_pred ChHHHHHHHhccc----cccCCeEEEEECCCCC-CccHHHHHHHHHHHhc------------------------------
Confidence 8888877665432 3568999999999998 6677777777776552
Q ss_pred CCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCC
Q psy16310 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 475 (1493)
Q Consensus 396 ~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1493)
...+|+++||||++..+..+.. ..+........
T Consensus 306 --~~~~q~il~SAT~~~~~~~~~~---------------------------~~~~~~~v~~~------------------ 338 (618)
T 2whx_A 306 --MGEAAAIFMTATPPGSTDPFPQ---------------------------SNSPIEDIERE------------------ 338 (618)
T ss_dssp --HTSCEEEEECSSCTTCCCSSCC---------------------------CSSCEEEEECC------------------
T ss_pred --ccCccEEEEECCCchhhhhhhc---------------------------cCCceeeeccc------------------
Confidence 1347999999999865432221 00000000000
Q ss_pred cchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchh
Q psy16310 476 KDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555 (1493)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~ 555 (1493)
.+. .+...+...+....+++||||+|+.
T Consensus 339 -----------~~~-----------------------------------------~~~~~ll~~l~~~~~~~LVF~~s~~ 366 (618)
T 2whx_A 339 -----------IPE-----------------------------------------RSWNTGFDWITDYQGKTVWFVPSIK 366 (618)
T ss_dssp -----------CCS-----------------------------------------SCCSSSCHHHHHCCSCEEEECSSHH
T ss_pred -----------CCH-----------------------------------------HHHHHHHHHHHhCCCCEEEEECChh
Confidence 000 0000111223345679999999999
Q ss_pred hHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEE-------------------
Q psy16310 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV------------------- 616 (1493)
Q Consensus 556 ~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~V------------------- 616 (1493)
.|+.+++.|...++.+..+||. +|.++++.|++|+.+|||||+++++|||+| |++|
T Consensus 367 ~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~ 441 (618)
T 2whx_A 367 AGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERV 441 (618)
T ss_dssp HHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCce
Confidence 9999999999999999999985 688899999999999999999999999998 9988
Q ss_pred -EEecCCCChHHHHHHHhccccCCC-CCeEEEEec---CCcchhhhhh
Q psy16310 617 -IHYHVPRTSEIYIHRSGRTARANN-EGLTVVLIE---SDEIPLKTKF 659 (1493)
Q Consensus 617 -I~yd~P~s~~~yiQR~GRagR~g~-~G~~i~l~~---~~e~~~~~~l 659 (1493)
|+||+|.+..+|+||+|||||+|. +|.|++|++ +.|...+..+
T Consensus 442 ~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~l 489 (618)
T 2whx_A 442 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWT 489 (618)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHH
T ss_pred EEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHH
Confidence 888889999999999999999965 899999998 5665555444
No 82
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.9e-36 Score=373.73 Aligned_cols=281 Identities=19% Similarity=0.238 Sum_probs=208.2
Q ss_pred CcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhh
Q psy16310 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870 (1493)
Q Consensus 791 pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (1493)
|...|++.|+.++.++++++++||||||||++|.+|+++
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----------------------------------------- 255 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----------------------------------------- 255 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------------------------------------
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------------------------------------
Confidence 444455666667888899999999999999999999874
Q ss_pred hccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcccc
Q psy16310 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950 (1493)
Q Consensus 871 ~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~ 950 (1493)
.+.++||++|||+||.|+++.+.+.. +..+...+|+.. +..+++|+|+|||+| +.... ..
T Consensus 256 ----~g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~---l~ 315 (666)
T 3o8b_A 256 ----QGYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGG---CS 315 (666)
T ss_dssp ----TTCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTS---CC
T ss_pred ----CCCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCC---cc
Confidence 12369999999999999999876643 355667777754 456789999999997 34333 23
Q ss_pred ccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHH
Q psy16310 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030 (1493)
Q Consensus 951 l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1030 (1493)
+.++++||||||| +++.+|...+..+++.+.. .....++++|||++..+..
T Consensus 316 l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~---~~~~llil~SAT~~~~i~~------------------------- 366 (666)
T 3o8b_A 316 GGAYDIIICDECH-STDSTTILGIGTVLDQAET---AGARLVVLATATPPGSVTV------------------------- 366 (666)
T ss_dssp TTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTT---TTCSEEEEEESSCTTCCCC-------------------------
T ss_pred cCcccEEEEccch-hcCccHHHHHHHHHHhhhh---cCCceEEEECCCCCccccc-------------------------
Confidence 5679999999996 5677787788888887742 1223377889999863210
Q ss_pred hHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccC
Q psy16310 1031 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110 (1493)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~ 1110 (1493)
..+....+.... ...+........ +....++++||||+|++.++.+++.|+..++.+..+||+
T Consensus 367 -----~~p~i~~v~~~~--~~~i~~~~~~~~----------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~ 429 (666)
T 3o8b_A 367 -----PHPNIEEVALSN--TGEIPFYGKAIP----------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRG 429 (666)
T ss_dssp -----CCTTEEEEECBS--CSSEEETTEEEC----------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred -----CCcceEEEeecc--cchhHHHHhhhh----------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCC
Confidence 001111100000 000000000000 001246899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEE----------Eec-----------CCCChhHHHHHHhccC
Q psy16310 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI----------HYH-----------VPRTSEIYIHRSGRTA 1169 (1493)
Q Consensus 1111 m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI----------~~d-----------~p~s~~~yiqr~GR~g 1169 (1493)
|++.+ |+++..+||||||+++||||+| |++|| ||| +|.+.++|+||+||||
T Consensus 430 l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtG 501 (666)
T 3o8b_A 430 LDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTG 501 (666)
T ss_dssp SCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBC
T ss_pred CCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCC
Confidence 99875 5567779999999999999997 99988 677 8999999999999999
Q ss_pred CCCCCCeEEEEecCCCHHH
Q psy16310 1170 RANNEGLTLVLIESDEIPL 1188 (1493)
Q Consensus 1170 R~g~~G~~i~l~~~~e~~~ 1188 (1493)
| |+.|. ++|+++.+...
T Consensus 502 R-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 502 R-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp S-SSCEE-EEESCCCCBCS
T ss_pred C-CCCCE-EEEEecchhhc
Confidence 9 99999 99998887544
No 83
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2e-37 Score=393.28 Aligned_cols=304 Identities=19% Similarity=0.200 Sum_probs=208.3
Q ss_pred HHHHCCCC-----CCcHHHH-----hhHHHhh-----ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 782 ALYQKGFK-----TPTKIQS-----MVMPSAL-----LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 782 ~l~~~g~~-----~pt~iQ~-----~~i~~~l-----~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
+|...||. +|||+|. ++||.++ ..++|++++||||||||++|++|+++.+..
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~------------- 268 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ------------- 268 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------------
Confidence 34455666 9999999 9998544 278999999999999999999999987642
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
.+.++|||+||++||.|+++.+..+. +. ...+... .....+
T Consensus 269 ----------------------------~~~~~lilaPTr~La~Q~~~~l~~~~----i~--~~~~~l~-----~v~tp~ 309 (673)
T 2wv9_A 269 ----------------------------KRLRTAVLAPTRVVAAEMAEALRGLP----VR--YLTPAVQ-----REHSGN 309 (673)
T ss_dssp ----------------------------TTCCEEEEESSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSC
T ss_pred ----------------------------CCCcEEEEccHHHHHHHHHHHHhcCC----ee--eeccccc-----ccCCHH
Confidence 23579999999999999999887542 22 1111000 000001
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
.-+-+.+.+.+...+... ..+.++++|||||||++ +..+...+..+...+. ....|+++||||++..+...
T Consensus 310 ~ll~~l~~~~l~~~l~~~----~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~----~~~~~vl~~SAT~~~~i~~~ 380 (673)
T 2wv9_A 310 EIVDVMCHATLTHRLMSP----LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVE----AGEAAAIFMTATPPGTSDPF 380 (673)
T ss_dssp CCEEEEEHHHHHHHHHSS----SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHH----TTSCEEEEECSSCTTCCCSS
T ss_pred HHHHHHHhhhhHHHHhcc----cccccceEEEEeCCccc-CccHHHHHHHHHHhcc----ccCCcEEEEcCCCChhhhhh
Confidence 123333444443333221 24678999999999997 2111122222333221 25689999999998654321
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecc
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 1086 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s 1086 (1493)
.. ....+..+... ... .....++..+...++++||||++
T Consensus 381 ~~---------------------------~~~~i~~v~~~-------------~~~-~~~~~~l~~l~~~~~~~lVF~~s 419 (673)
T 2wv9_A 381 PD---------------------------TNSPVHDVSSE-------------IPD-RAWSSGFEWITDYAGKTVWFVAS 419 (673)
T ss_dssp CC---------------------------CSSCEEEEECC-------------CCS-SCCSSCCHHHHSCCSCEEEECSS
T ss_pred cc---------------------------cCCceEEEeee-------------cCH-HHHHHHHHHHHhCCCCEEEEECC
Confidence 10 00111111100 000 11111233445568899999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE---------------
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------------- 1151 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~--------------- 1151 (1493)
+..++.++..|...++.+..+||+ +|..+++.|++|+++|||||+++++|||+| +++|||
T Consensus 420 ~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~ 494 (673)
T 2wv9_A 420 VKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEG 494 (673)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTC
T ss_pred HHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccc
Confidence 999999999999999999999994 789999999999999999999999999999 999998
Q ss_pred -----ecCCCChhHHHHHHhccCCC-CCCCeEEEEe---cCCCHHHHHHH
Q psy16310 1152 -----YHVPRTSEIYIHRSGRTARA-NNEGLTLVLI---ESDEIPLYIKM 1192 (1493)
Q Consensus 1152 -----~d~p~s~~~yiqr~GR~gR~-g~~G~~i~l~---~~~e~~~~~~~ 1192 (1493)
|++|.+.++|+||+||+||. |+.|.|++|+ ++.+...+..+
T Consensus 495 r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~i 544 (673)
T 2wv9_A 495 RVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWT 544 (673)
T ss_dssp EEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHH
T ss_pred cceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHH
Confidence 67999999999999999999 7899999996 45555444433
No 84
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3.5e-36 Score=368.01 Aligned_cols=282 Identities=18% Similarity=0.181 Sum_probs=195.1
Q ss_pred hhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEE
Q psy16310 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881 (1493)
Q Consensus 802 ~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 881 (1493)
++..|+|++++||||||||++|++|+++.+.. .+.+++|
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----------------------------------------~~~~~li 42 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------------------------------------RRLRTLV 42 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------------------------------------TTCCEEE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----------------------------------------cCCeEEE
Confidence 45688999999999999999999999987642 2357999
Q ss_pred EcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc-----CccccccceeE
Q psy16310 882 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH-----FHLTELYKINY 956 (1493)
Q Consensus 882 l~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~-----~~~~~l~~l~~ 956 (1493)
++||++||.|+++.+..+ .+....+.. -.|+||+++.+++..+. .....+.++++
T Consensus 43 l~Ptr~La~Q~~~~l~~~------~v~~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~ 102 (440)
T 1yks_A 43 LAPTRVVLSEMKEAFHGL------DVKFHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEV 102 (440)
T ss_dssp EESSHHHHHHHHHHTTTS------CEEEESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSE
T ss_pred EcchHHHHHHHHHHHhcC------CeEEecccc--------------eeccCCccceeeecccchhHhhhCcccccCccE
Confidence 999999999999988743 222221111 03777776654332211 11223678999
Q ss_pred EEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccC
Q psy16310 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 1036 (1493)
Q Consensus 957 lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1036 (1493)
||+||||++ +.++...+..+...+. ....|+++||||++..+..... .
T Consensus 103 vViDEah~~-~~~~~~~~~~~~~~~~----~~~~~~l~~SAT~~~~~~~~~~---------------------------~ 150 (440)
T 1yks_A 103 IIMDEAHFL-DPASIAARGWAAHRAR----ANESATILMTATPPGTSDEFPH---------------------------S 150 (440)
T ss_dssp EEETTTTCC-SHHHHHHHHHHHHHHH----TTSCEEEEECSSCTTCCCSSCC---------------------------C
T ss_pred EEEECcccc-CcchHHHHHHHHHHhc----cCCceEEEEeCCCCchhhhhhh---------------------------c
Confidence 999999998 3333333333333321 2568999999999865432110 0
Q ss_pred CCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHH
Q psy16310 1037 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116 (1493)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R 1116 (1493)
......+.. .+.... ...++..+...++++||||+++..|+.++..|...++.+..+|| .+|
T Consensus 151 ~~~~~~~~~-------------~~~~~~-~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R 212 (440)
T 1yks_A 151 NGEIEDVQT-------------DIPSEP-WNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTF 212 (440)
T ss_dssp SSCEEEEEC-------------CCCSSC-CSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSC
T ss_pred CCCeeEeee-------------ccChHH-HHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhH
Confidence 000110000 011111 11123445556889999999999999999999999999999999 468
Q ss_pred HHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE-------------------ecCCCChhHHHHHHhccCCC-CCCCe
Q psy16310 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH-------------------YHVPRTSEIYIHRSGRTARA-NNEGL 1176 (1493)
Q Consensus 1117 ~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~-------------------~d~p~s~~~yiqr~GR~gR~-g~~G~ 1176 (1493)
..+++.|++|+++|||||+++++|+|+| +++||+ |+.|.+..+|+||+||+||. |+.|.
T Consensus 213 ~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~ 291 (440)
T 1yks_A 213 EREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGD 291 (440)
T ss_dssp C--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE
T ss_pred HHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCce
Confidence 8999999999999999999999999999 999996 89999999999999999997 68999
Q ss_pred EEEEe---cCCCHHHHHHHHHh
Q psy16310 1177 TLVLI---ESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1177 ~i~l~---~~~e~~~~~~~~~~ 1195 (1493)
|++|+ ++.+...+..+...
T Consensus 292 ~~~l~~~~~~~~~~~l~~l~~~ 313 (440)
T 1yks_A 292 SYYYSEPTSENNAHHVCWLEAS 313 (440)
T ss_dssp EEEECSCCCCCCTTBHHHHHHH
T ss_pred EEEEeccCChhhhhhhhhhhHH
Confidence 99996 56666555555443
No 85
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.3e-35 Score=374.07 Aligned_cols=328 Identities=16% Similarity=0.192 Sum_probs=229.6
Q ss_pred CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 788 ~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
...|+|+|.++++.++ .++++++++|||||||++|++|++..+..
T Consensus 111 ~~~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------------------------------- 155 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN---------------------------------- 155 (510)
T ss_dssp EECCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHH----------------------------------
T ss_pred CCCCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------------------------------
Confidence 4589999999998655 55899999999999999999998876522
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCc
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~ 947 (1493)
.+.++|||+||++|+.|+++.+.+++...+..+..++||.....+ +...++|+|+||+.|... .
T Consensus 156 -------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~--- 219 (510)
T 2oca_A 156 -------YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---P--- 219 (510)
T ss_dssp -------CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---C---
T ss_pred -------CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---h---
Confidence 123799999999999999999999877777889999998766544 456789999999976432 1
Q ss_pred cccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhh--ccCcCcccccCCCch
Q psy16310 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLK--KGQSKSKKVSKGDPS 1025 (1493)
Q Consensus 948 ~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~--~~~~~~~~~~~~~~~ 1025 (1493)
...+.++++|||||||++.. ..+..++..+ ....++++||||+++......... .+... ......
T Consensus 220 ~~~~~~~~liIiDE~H~~~~----~~~~~il~~~-----~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~-~~~~~~--- 286 (510)
T 2oca_A 220 KEWFSQFGMMMNDECHLATG----KSISSIISGL-----NNCMFKFGLSGSLRDGKANIMQYVGMFGEIF-KPVTTS--- 286 (510)
T ss_dssp GGGGGGEEEEEEETGGGCCH----HHHHHHGGGC-----TTCCEEEEEESCGGGCSSCHHHHHHHHCSEE-CCCCCC---
T ss_pred hhhhhcCCEEEEECCcCCCc----ccHHHHHHhc-----ccCcEEEEEEeCCCCCcccHHHhHHhhCCeE-EeeCHH---
Confidence 13466899999999999865 4566666555 356789999999986643321110 00000 000000
Q ss_pred hHHHHhHhccCCCcEEeccccc--ccc-----cccee-eEEEecccchhhHHHHHHHhC---CC-cEEEEecchhhHHHH
Q psy16310 1026 IKRLQDLLNIKSPKIVDLTEKI--GIT-----KTLTE-SKILCKHDEKDSYLYYFILQH---PG-RTLVFCNSISSVKRL 1093 (1493)
Q Consensus 1026 ~~~l~~~~~~~~~~~~~~~~~~--~~~-----~~~~~-~~~~~~~~~k~~~l~~~l~~~---~~-~~IVF~~s~~~~~~l 1093 (1493)
.....-.+............ ... ..... ....+....+...+..++... ++ ++||||+ +..+..+
T Consensus 287 --~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l 363 (510)
T 2oca_A 287 --KLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAI 363 (510)
T ss_dssp -----------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHH
T ss_pred --HHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHH
Confidence 00000001111110000000 000 00000 001111223333444444432 44 4555555 8899999
Q ss_pred HHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEee-hhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCC
Q psy16310 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT-DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172 (1493)
Q Consensus 1094 ~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaT-dv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g 1172 (1493)
+..|...+..+..+||+|++.+|..+++.|++|+.+||||| +++++|+|+|++++||++++|.+...|+||+||+||.|
T Consensus 364 ~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g 443 (510)
T 2oca_A 364 FDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKH 443 (510)
T ss_dssp HHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccC
Confidence 99999998899999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCeEEEEec
Q psy16310 1173 NEGLTLVLIE 1182 (1493)
Q Consensus 1173 ~~G~~i~l~~ 1182 (1493)
..|.++++++
T Consensus 444 ~~~~~v~i~~ 453 (510)
T 2oca_A 444 GSKTIATVWD 453 (510)
T ss_dssp CCCCCCEEEE
T ss_pred CCCceEEEEE
Confidence 8875555554
No 86
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.5e-35 Score=377.67 Aligned_cols=334 Identities=16% Similarity=0.182 Sum_probs=239.1
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 766 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
++..|.++++++.+.+.+...| ..|+++|.++|+.++.++++++++||||||||+ ++|++......
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~----------- 135 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM----------- 135 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC-----------
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc-----------
Confidence 4567999999999999999988 899999999999999888899999999999999 56666211100
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhh-CCCCcEEEEEEcCCCHHHHHHHhc
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG-KYTPVKVACVVGGMSTEKQLRILN 924 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~-~~~~~~v~~~~gg~~~~~~~~~l~ 924 (1493)
....+.+++|++|||+||.|+++.+.... ...+..++.-..... ...
T Consensus 136 --------------------------~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~ 183 (773)
T 2xau_A 136 --------------------------PHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTS 183 (773)
T ss_dssp --------------------------GGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECC
T ss_pred --------------------------ccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccC
Confidence 01124579999999999999998775543 122222222111100 112
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccch-hccCCC-hhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR-MIESGH-FPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~-ll~~~~-~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
...+|+|+|||++...+.... .+.++++|||||||. +++..+ ...+..+.... +..|++++|||++..
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~~----~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~------~~~~iIl~SAT~~~~ 253 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMEDH----DLSRYSCIILDEAHERTLATDILMGLLKQVVKRR------PDLKIIIMSATLDAE 253 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHST----TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC------TTCEEEEEESCSCCH
T ss_pred CCCCEEEECHHHHHHHHhhCc----cccCCCEEEecCccccccchHHHHHHHHHHHHhC------CCceEEEEeccccHH
Confidence 357899999999998876542 367899999999995 555322 22233333221 468999999999632
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHH----HHHHHh-CC
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL----YYFILQ-HP 1077 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l----~~~l~~-~~ 1077 (1493)
. ..... ....++.+... ...+...+......+..... ..+... .+
T Consensus 254 ~--l~~~~-------------------------~~~~vi~v~gr---~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 303 (773)
T 2xau_A 254 K--FQRYF-------------------------NDAPLLAVPGR---TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEA 303 (773)
T ss_dssp H--HHHHT-------------------------TSCCEEECCCC---CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCS
T ss_pred H--HHHHh-------------------------cCCCcccccCc---ccceEEEEecCCchhHHHHHHHHHHHHHHhcCC
Confidence 1 11111 01111221111 11122222222222322222 222222 47
Q ss_pred CcEEEEecchhhHHHHHHHHHh-----------cCCCccccccCCCHHHHHHHHHHHh-----cCCCCeEEeehhhhccc
Q psy16310 1078 GRTLVFCNSISSVKRLTQLLTM-----------LKCSPLPLHASMNQRQRLKNLDRFR-----DQNNSILLATDVAARGL 1141 (1493)
Q Consensus 1078 ~~~IVF~~s~~~~~~l~~~L~~-----------~~~~~~~lhg~m~~~~R~~~~~~F~-----~g~~~VLVaTdv~~~Gi 1141 (1493)
+++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|+ .|..+|||||+++++||
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~Gi 383 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSL 383 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTC
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCc
Confidence 8999999999999999999975 4778999999999999999999999 99999999999999999
Q ss_pred cCCCccEEEEecC------------------CCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1142 DIPGIEHVIHYHV------------------PRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1142 Dip~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
|+|+|++||++++ |.+..+|+||+|||||. +.|.|+.|+++.+.
T Consensus 384 dIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 384 TIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999887 89999999999999999 79999999976543
No 87
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.1e-33 Score=380.61 Aligned_cols=323 Identities=18% Similarity=0.211 Sum_probs=235.8
Q ss_pred cCCCHHHHHHHH-HCCCCCChHHHHhhhhhhhcc---CC--cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 156 FNIPETIIRALY-QKGFKTPTKIQSMVMPSALLA---RK--DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 156 l~l~~~l~~~l~-~~g~~~pt~iQ~~~i~~~l~~---~~--dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
++++....+.+. ..+|. |||+|.++++.++.. ++ |+|+|+|||||||++|+++++..+.
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-------------- 650 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-------------- 650 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------------
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------------
Confidence 456667666664 45885 799999999966542 55 9999999999999999999876542
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHH---HHh
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL---RIL 306 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~---~~l 306 (1493)
.+.+++||+||++||.|+++.+.......++++..++|..+..... ..+
T Consensus 651 ----------------------------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l 702 (1151)
T 2eyq_A 651 ----------------------------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 702 (1151)
T ss_dssp ----------------------------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHH
T ss_pred ----------------------------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHH
Confidence 3457999999999999999999988887889999999887765543 333
Q ss_pred cC-CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 307 NK-CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 307 ~~-~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
.. .++|+|+||+.|. ... .+.++++|||||||++ ......++..+
T Consensus 703 ~~g~~dIvV~T~~ll~-----~~~---~~~~l~lvIiDEaH~~-----g~~~~~~l~~l--------------------- 748 (1151)
T 2eyq_A 703 AEGKIDILIGTHKLLQ-----SDV---KFKDLGLLIVDEEHRF-----GVRHKERIKAM--------------------- 748 (1151)
T ss_dssp HTTCCSEEEECTHHHH-----SCC---CCSSEEEEEEESGGGS-----CHHHHHHHHHH---------------------
T ss_pred hcCCCCEEEECHHHHh-----CCc---cccccceEEEechHhc-----ChHHHHHHHHh---------------------
Confidence 33 5899999998763 222 3568899999999985 22334444433
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccc
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1493)
....++++||||+.+.......... .....+...
T Consensus 749 ------------~~~~~vl~lSATp~p~~l~~~~~~~------------------------~~~~~i~~~---------- 782 (1151)
T 2eyq_A 749 ------------RANVDILTLTATPIPRTLNMAMSGM------------------------RDLSIIATP---------- 782 (1151)
T ss_dssp ------------HTTSEEEEEESSCCCHHHHHHHTTT------------------------SEEEECCCC----------
T ss_pred ------------cCCCCEEEEcCCCChhhHHHHHhcC------------------------CCceEEecC----------
Confidence 2346899999998654332211000 000000000
Q ss_pred hhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH--hhC
Q psy16310 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI--LQH 543 (1493)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l--~~~ 543 (1493)
+.. .. .+... . ...........++ ...
T Consensus 783 ----------------------~~~----------------------r~----~i~~~--~-~~~~~~~i~~~il~~l~~ 811 (1151)
T 2eyq_A 783 ----------------------PAR----------------------RL----AVKTF--V-REYDSMVVREAILREILR 811 (1151)
T ss_dssp ----------------------CCB----------------------CB----CEEEE--E-EECCHHHHHHHHHHHHTT
T ss_pred ----------------------CCC----------------------cc----ccEEE--E-ecCCHHHHHHHHHHHHhc
Confidence 000 00 00000 0 0000111111111 124
Q ss_pred CCcEEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~ 621 (1493)
+++++|||+++.+++.++..|... +..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+++.
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~ 891 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 891 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCC
Confidence 679999999999999999999887 788999999999999999999999999999999999999999999999999998
Q ss_pred -CCChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 622 -PRTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 622 -P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
+.++..|+||+||+||.|+.|+|++++.+.+
T Consensus 892 ~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 892 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 4689999999999999999999999997654
No 88
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.5e-35 Score=360.48 Aligned_cols=279 Identities=18% Similarity=0.179 Sum_probs=189.2
Q ss_pred hhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEE
Q psy16310 185 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264 (1493)
Q Consensus 185 ~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLi 264 (1493)
++..|+|++++||||||||++|++|+++.+.. .+++++|
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----------------------------------------~~~~~li 42 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------------------------------------RRLRTLV 42 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------------------------------------TTCCEEE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----------------------------------------cCCeEEE
Confidence 56688999999999999999999999987643 2357999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCC-----ccccccccccE
Q psy16310 265 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH-----FHLTELYKINY 339 (1493)
Q Consensus 265 L~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~-----~~~~~l~~i~~ 339 (1493)
|+||++||.|+++.+..+ + +....+.. -.|+||+++++++.++. .....+.++++
T Consensus 43 l~Ptr~La~Q~~~~l~~~----~--v~~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~ 102 (440)
T 1yks_A 43 LAPTRVVLSEMKEAFHGL----D--VKFHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEV 102 (440)
T ss_dssp EESSHHHHHHHHHHTTTS----C--EEEESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSE
T ss_pred EcchHHHHHHHHHHHhcC----C--eEEecccc--------------eeccCCccceeeecccchhHhhhCcccccCccE
Confidence 999999999999988643 2 22211111 13788877654333221 11123568999
Q ss_pred EEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 340 lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
|||||||++ +.++...+..+...+. ...+|+++||||+++.+..+..
T Consensus 103 vViDEah~~-~~~~~~~~~~~~~~~~--------------------------------~~~~~~l~~SAT~~~~~~~~~~ 149 (440)
T 1yks_A 103 IIMDEAHFL-DPASIAARGWAAHRAR--------------------------------ANESATILMTATPPGTSDEFPH 149 (440)
T ss_dssp EEETTTTCC-SHHHHHHHHHHHHHHH--------------------------------TTSCEEEEECSSCTTCCCSSCC
T ss_pred EEEECcccc-CcchHHHHHHHHHHhc--------------------------------cCCceEEEEeCCCCchhhhhhh
Confidence 999999998 3332222222222110 2347999999999865433221
Q ss_pred hhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhh
Q psy16310 420 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499 (1493)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1493)
. ....... .. .
T Consensus 150 ~---------------------------~~~~~~~----------~~---~----------------------------- 160 (440)
T 1yks_A 150 S---------------------------NGEIEDV----------QT---D----------------------------- 160 (440)
T ss_dssp C---------------------------SSCEEEE----------EC---C-----------------------------
T ss_pred c---------------------------CCCeeEe----------ee---c-----------------------------
Confidence 0 0000000 00 0
Q ss_pred hhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCC
Q psy16310 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 579 (1493)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~ 579 (1493)
+.... ...++..+...++++||||+++..++.++..|...++.+..+||
T Consensus 161 ---------------------------~~~~~-~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg--- 209 (440)
T 1yks_A 161 ---------------------------IPSEP-WNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR--- 209 (440)
T ss_dssp ---------------------------CCSSC-CSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS---
T ss_pred ---------------------------cChHH-HHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc---
Confidence 00000 00011233345679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE-------------------ecCCCChHHHHHHHhccccC-C
Q psy16310 580 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH-------------------YHVPRTSEIYIHRSGRTARA-N 639 (1493)
Q Consensus 580 ~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~-------------------yd~P~s~~~yiQR~GRagR~-g 639 (1493)
.+|..+++.|++|+++|||||+++++|||+| +++||+ |+.|.+..+|+||+|||||. |
T Consensus 210 -~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 210 -KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp -SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred -hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 4688999999999999999999999999999 999996 99999999999999999997 6
Q ss_pred CCCeEEEEe---cCCcchhhhhh
Q psy16310 640 NEGLTVVLI---ESDEIPLKTKF 659 (1493)
Q Consensus 640 ~~G~~i~l~---~~~e~~~~~~l 659 (1493)
.+|.|++|+ ++.+...+..+
T Consensus 288 ~~g~~~~l~~~~~~~~~~~l~~l 310 (440)
T 1yks_A 288 RDGDSYYYSEPTSENNAHHVCWL 310 (440)
T ss_dssp CCCEEEEECSCCCCCCTTBHHHH
T ss_pred CCceEEEEeccCChhhhhhhhhh
Confidence 899999997 45555544443
No 89
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.1e-36 Score=383.81 Aligned_cols=303 Identities=19% Similarity=0.216 Sum_probs=204.5
Q ss_pred HHHHCCCC-----CChHHHH-----hhhhhhh-----ccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 165 ALYQKGFK-----TPTKIQS-----MVMPSAL-----LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 165 ~l~~~g~~-----~pt~iQ~-----~~i~~~l-----~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
++..+||. .||++|+ ++||.++ ..++|+|++||||||||++|++|+++.+..
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~------------- 268 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ------------- 268 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------------
Confidence 44556777 8999999 9998544 278999999999999999999999987642
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
.+.++|||+||++||.|+++.+..+ ++. ...+.... .-..+
T Consensus 269 ----------------------------~~~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~ 309 (673)
T 2wv9_A 269 ----------------------------KRLRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGN 309 (673)
T ss_dssp ----------------------------TTCCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSC
T ss_pred ----------------------------CCCcEEEEccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHH
Confidence 2357999999999999999988654 222 11111000 00011
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
.-+-+.+.+.+...+... ..+.++++|||||||++ +..+...+..+...+.
T Consensus 310 ~ll~~l~~~~l~~~l~~~----~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~------------------------ 360 (673)
T 2wv9_A 310 EIVDVMCHATLTHRLMSP----LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVE------------------------ 360 (673)
T ss_dssp CCEEEEEHHHHHHHHHSS----SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHhhhhHHHHhcc----cccccceEEEEeCCccc-CccHHHHHHHHHHhcc------------------------
Confidence 122333334443333221 23668999999999988 2111122222222110
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
...+|+++||||++..+..+... ...+..+..
T Consensus 361 --------~~~~~vl~~SAT~~~~i~~~~~~---------------------------~~~i~~v~~------------- 392 (673)
T 2wv9_A 361 --------AGEAAAIFMTATPPGTSDPFPDT---------------------------NSPVHDVSS------------- 392 (673)
T ss_dssp --------TTSCEEEEECSSCTTCCCSSCCC---------------------------SSCEEEEEC-------------
T ss_pred --------ccCCcEEEEcCCCChhhhhhccc---------------------------CCceEEEee-------------
Confidence 23479999999998654332210 000000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 549 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~II 549 (1493)
..+ . .....++..+....+++||
T Consensus 393 ----------------~~~----------------------------------------~-~~~~~~l~~l~~~~~~~lV 415 (673)
T 2wv9_A 393 ----------------EIP----------------------------------------D-RAWSSGFEWITDYAGKTVW 415 (673)
T ss_dssp ----------------CCC----------------------------------------S-SCCSSCCHHHHSCCSCEEE
T ss_pred ----------------ecC----------------------------------------H-HHHHHHHHHHHhCCCCEEE
Confidence 000 0 0000011223345679999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE-----------
Q psy16310 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH----------- 618 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~----------- 618 (1493)
||+++..++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++||+
T Consensus 416 F~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~ 490 (673)
T 2wv9_A 416 FVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILD 490 (673)
T ss_dssp ECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEEC
T ss_pred EECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeee
Confidence 9999999999999999999999999994 789999999999999999999999999999 999998
Q ss_pred ---------ecCCCChHHHHHHHhccccC-CCCCeEEEEe---cCCcchhhhh
Q psy16310 619 ---------YHVPRTSEIYIHRSGRTARA-NNEGLTVVLI---ESDEIPLKTK 658 (1493)
Q Consensus 619 ---------yd~P~s~~~yiQR~GRagR~-g~~G~~i~l~---~~~e~~~~~~ 658 (1493)
||+|.+..+|+||+|||||. |++|.|++|+ ++.|......
T Consensus 491 da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ 543 (673)
T 2wv9_A 491 EGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHW 543 (673)
T ss_dssp STTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHH
T ss_pred cccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHH
Confidence 67999999999999999999 7899999997 4555544444
No 90
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.1e-34 Score=360.71 Aligned_cols=281 Identities=19% Similarity=0.242 Sum_probs=205.6
Q ss_pred ChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhh
Q psy16310 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 253 (1493)
Q Consensus 174 pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1493)
|...|++.++.++.++++++++||||||||++|.+|+++
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----------------------------------------- 255 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----------------------------------------- 255 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------------------------------------
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------------------------------------
Confidence 444445555558888899999999999999999998873
Q ss_pred hcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccc
Q psy16310 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333 (1493)
Q Consensus 254 ~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~ 333 (1493)
.+.++||++|||+||.|+++.+.... +..+...+|+.. +..+++|+|+|||+|+ ..... .
T Consensus 256 ----~g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~~~l---~ 315 (666)
T 3o8b_A 256 ----QGYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKFL---ADGGC---S 315 (666)
T ss_dssp ----TTCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHHH---HTTSC---C
T ss_pred ----CCCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHHH---hCCCc---c
Confidence 12469999999999999998776653 455677777754 4567899999999983 33333 2
Q ss_pred cccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchh
Q psy16310 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 413 (1493)
Q Consensus 334 l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~ 413 (1493)
+.++++||||||| +++.++...+..+++.+... ....++++|||++..
T Consensus 316 l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~-------------------------------~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 316 GGAYDIIICDECH-STDSTTILGIGTVLDQAETA-------------------------------GARLVVLATATPPGS 363 (666)
T ss_dssp TTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTT-------------------------------TCSEEEEEESSCTTC
T ss_pred cCcccEEEEccch-hcCccHHHHHHHHHHhhhhc-------------------------------CCceEEEECCCCCcc
Confidence 5579999999996 55777877788887766321 112367789999853
Q ss_pred hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchh
Q psy16310 414 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493 (1493)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1493)
+.. .. +....... .......
T Consensus 364 i~~----------------~~--------------p~i~~v~~---------------~~~~~i~--------------- 383 (666)
T 3o8b_A 364 VTV----------------PH--------------PNIEEVAL---------------SNTGEIP--------------- 383 (666)
T ss_dssp CCC----------------CC--------------TTEEEEEC---------------BSCSSEE---------------
T ss_pred ccc----------------CC--------------cceEEEee---------------cccchhH---------------
Confidence 210 00 00000000 0000000
Q ss_pred hHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccc
Q psy16310 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 573 (1493)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~ 573 (1493)
.. .... . +-...++++||||++++.++.+++.|...++.+..
T Consensus 384 --------~~-------~~~~-----------~------------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~ 425 (666)
T 3o8b_A 384 --------FY-------GKAI-----------P------------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVA 425 (666)
T ss_dssp --------ET-------TEEE-----------C------------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEE
T ss_pred --------HH-------Hhhh-----------h------------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEE
Confidence 00 0000 0 00113579999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE----------Eec-----------CCCChHHHHHHH
Q psy16310 574 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI----------HYH-----------VPRTSEIYIHRS 632 (1493)
Q Consensus 574 lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI----------~yd-----------~P~s~~~yiQR~ 632 (1493)
+||+|++.+ |+++..+|||||+++++|||+| |++|| ||| +|.+..+|+||+
T Consensus 426 lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRi 497 (666)
T 3o8b_A 426 YYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRR 497 (666)
T ss_dssp ECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHH
T ss_pred ecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHh
Confidence 999999875 5567779999999999999997 99998 677 899999999999
Q ss_pred hccccCCCCCeEEEEecCCcchh
Q psy16310 633 GRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 633 GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
||||| |++|. ++|+++.|...
T Consensus 498 GRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 498 GRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp TTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccCCC-CCCCE-EEEEecchhhc
Confidence 99999 99999 99999988665
No 91
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.4e-35 Score=360.71 Aligned_cols=273 Identities=21% Similarity=0.246 Sum_probs=197.1
Q ss_pred HHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEE
Q psy16310 800 PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879 (1493)
Q Consensus 800 ~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1493)
+.++..+++++++||||||||++|++|+++.+.. .+.++
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------------------------------------~~~~~ 53 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------------------------------------QRLRT 53 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------------------------------------TTCCE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------------------------------------CCCcE
Confidence 4567788999999999999999999999987642 23579
Q ss_pred EEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEe
Q psy16310 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 959 (1493)
Q Consensus 880 lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVl 959 (1493)
||++|||+||.|+++.+. +..+....+..... -..+..+.++|.+.+...+... ..+.++++|||
T Consensus 54 lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iVi 118 (459)
T 2z83_A 54 AVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVM 118 (459)
T ss_dssp EEEECSHHHHHHHHHHTT------TSCEEECC-------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEE
T ss_pred EEECchHHHHHHHHHHhc------CceEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEE
Confidence 999999999999999886 23333222211110 1223357788999887666543 24678999999
Q ss_pred cccch-----hccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhc
Q psy16310 960 DETDR-----MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 1034 (1493)
Q Consensus 960 DEah~-----ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1034 (1493)
||||+ ++..++... ... ....|+++||||++..+.....
T Consensus 119 DEaH~~~~~~~~~~~~~~~------~~~----~~~~~~il~SAT~~~~~~~~~~-------------------------- 162 (459)
T 2z83_A 119 DEAHFTDPASIAARGYIAT------KVE----LGEAAAIFMTATPPGTTDPFPD-------------------------- 162 (459)
T ss_dssp SSTTCCSHHHHHHHHHHHH------HHH----TTSCEEEEECSSCTTCCCSSCC--------------------------
T ss_pred ECCccCCchhhHHHHHHHH------Hhc----cCCccEEEEEcCCCcchhhhcc--------------------------
Confidence 99998 344333221 111 2578999999999865422110
Q ss_pred cCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHH
Q psy16310 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114 (1493)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~ 1114 (1493)
...+ +..+.... + ......++.++....+++||||+|+..|+.++..|...++.+..+||.
T Consensus 163 ~~~p-i~~~~~~~-------------~-~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~---- 223 (459)
T 2z83_A 163 SNAP-IHDLQDEI-------------P-DRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK---- 223 (459)
T ss_dssp CSSC-EEEEECCC-------------C-SSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----
T ss_pred CCCC-eEEecccC-------------C-cchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----
Confidence 0011 11110000 0 001111223455568899999999999999999999999999999995
Q ss_pred HHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE--------------------ecCCCChhHHHHHHhccCCCCC-
Q psy16310 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------------------YHVPRTSEIYIHRSGRTARANN- 1173 (1493)
Q Consensus 1115 ~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~--------------------~d~p~s~~~yiqr~GR~gR~g~- 1173 (1493)
+|..+++.|++|+.+|||||+++++|||+|+ ++||+ |++|.+..+|+||+|||||.|+
T Consensus 224 ~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~ 302 (459)
T 2z83_A 224 SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ 302 (459)
T ss_dssp CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC
T ss_pred HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC
Confidence 6888999999999999999999999999999 99999 7799999999999999999997
Q ss_pred CCeEEEEecCC
Q psy16310 1174 EGLTLVLIESD 1184 (1493)
Q Consensus 1174 ~G~~i~l~~~~ 1184 (1493)
.|.+++|+.+.
T Consensus 303 ~G~~~~~~~~~ 313 (459)
T 2z83_A 303 VGDEYHYGGAT 313 (459)
T ss_dssp CCEEEEECSCC
T ss_pred CCeEEEEEccc
Confidence 99999999875
No 92
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=5.1e-34 Score=369.34 Aligned_cols=335 Identities=16% Similarity=0.192 Sum_probs=232.8
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
...+|.++++++.+.+.+...+ ..|+++|+++|+.++.++++++++||||||||+ ++|++-....
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~------------ 134 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE------------ 134 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH------------
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc------------
Confidence 3457999999999999999888 789999999999899888899999999999999 4666511100
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhc-CCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG-KYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~-~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
.....+.+++|++|||+||.|+.+.+.... ...+..++.-..... ...
T Consensus 135 -------------------------~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~ 183 (773)
T 2xau_A 135 -------------------------MPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTS 183 (773)
T ss_dssp -------------------------CGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECC
T ss_pred -------------------------cccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccC
Confidence 001124679999999999999988765433 222222221111100 112
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCch-hhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR-MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~-ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
...+|+|+|||+|.+.+.... .+.++++|||||||. .++..+ +..++..+...
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~~----~l~~~~~lIlDEah~R~ld~d~---~~~~l~~l~~~------------------- 237 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMEDH----DLSRYSCIILDEAHERTLATDI---LMGLLKQVVKR------------------- 237 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHST----TCTTEEEEEECSGGGCCHHHHH---HHHHHHHHHHH-------------------
T ss_pred CCCCEEEECHHHHHHHHhhCc----cccCCCEEEecCccccccchHH---HHHHHHHHHHh-------------------
Confidence 456899999999998876542 366899999999996 554321 22222222110
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
.+..|+++||||++.. .+.. ++. ....+...... ..+.
T Consensus 238 -----------~~~~~iIl~SAT~~~~--~l~~-----------------------~~~--~~~vi~v~gr~---~pv~- 275 (773)
T 2xau_A 238 -----------RPDLKIIIMSATLDAE--KFQR-----------------------YFN--DAPLLAVPGRT---YPVE- 275 (773)
T ss_dssp -----------CTTCEEEEEESCSCCH--HHHH-----------------------HTT--SCCEEECCCCC---CCEE-
T ss_pred -----------CCCceEEEEeccccHH--HHHH-----------------------Hhc--CCCcccccCcc---cceE-
Confidence 1246999999999632 1111 110 00000000000 0000
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCc----hhhHHHHHHhh
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE----KDSYLYYFILQ 542 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~~l~~ 542 (1493)
..+....... ....+...+..
T Consensus 276 -------------------------------------------------------~~~~~~~~~~~~~~~l~~l~~~~~~ 300 (773)
T 2xau_A 276 -------------------------------------------------------LYYTPEFQRDYLDSAIRTVLQIHAT 300 (773)
T ss_dssp -------------------------------------------------------EECCSSCCSCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------EEEecCCchhHHHHHHHHHHHHHHh
Confidence 0000000000 11122222222
Q ss_pred -CCCcEEEEecchhhHHHHHHHHHh-----------cCCCccccccCCCHHHHHHHHHHHh-----cCCCeEEEEechhh
Q psy16310 543 -HPGRTLVFCNSISSVKRLTQLLTM-----------LKCSPLPLHASMNQRQRLKNLDRFR-----DQNNSILLATDVAA 605 (1493)
Q Consensus 543 -~~~~~IIF~~s~~~a~~L~~~L~~-----------~~~~~~~lhg~~~~~~R~~vl~~Fr-----~g~~~VLVaTdv~~ 605 (1493)
.++++||||+++.+++.++..|.. .++.+..+||+|++.+|..+++.|+ +|..+|||||++++
T Consensus 301 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae 380 (773)
T 2xau_A 301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAE 380 (773)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHH
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHH
Confidence 478999999999999999999974 4778899999999999999999999 99999999999999
Q ss_pred ccCCCCCCcEEEEecC------------------CCChHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 606 RGLDIPGIEHVIHYHV------------------PRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 606 rGlDip~v~~VI~yd~------------------P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
+|||||+|++||+|++ |.+..+|+||+|||||. .+|.|++|+++.+.
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999887 89999999999999999 69999999987654
No 93
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.8e-34 Score=360.72 Aligned_cols=337 Identities=15% Similarity=0.189 Sum_probs=227.1
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
...|+|+|.++++.++ .++++++++|||||||++|++++...+..
T Consensus 111 ~~~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------------------------------- 155 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN---------------------------------- 155 (510)
T ss_dssp EECCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHH----------------------------------
T ss_pred CCCCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------------------------------
Confidence 3479999999998555 56899999999999999999988866531
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcc
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~ 330 (1493)
.+.++|||+||++|+.|+++.|..++...++.+..++|+.....+ +...++|+|+||+.|... .
T Consensus 156 -------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~--- 219 (510)
T 2oca_A 156 -------YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---P--- 219 (510)
T ss_dssp -------CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---C---
T ss_pred -------CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---h---
Confidence 123799999999999999999999877667889999988765543 456689999999987432 1
Q ss_pred ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeecc
Q psy16310 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410 (1493)
Q Consensus 331 ~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl 410 (1493)
...+.++++|||||||++.. ..+..++..+ ....++++||||+
T Consensus 220 ~~~~~~~~liIiDE~H~~~~----~~~~~il~~~---------------------------------~~~~~~l~lSATp 262 (510)
T 2oca_A 220 KEWFSQFGMMMNDECHLATG----KSISSIISGL---------------------------------NNCMFKFGLSGSL 262 (510)
T ss_dssp GGGGGGEEEEEEETGGGCCH----HHHHHHGGGC---------------------------------TTCCEEEEEESCG
T ss_pred hhhhhcCCEEEEECCcCCCc----ccHHHHHHhc---------------------------------ccCcEEEEEEeCC
Confidence 12355789999999999864 3455554433 2346899999999
Q ss_pred chhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCc
Q psy16310 411 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490 (1493)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1493)
++.......... +. .+.......... .... .+......... ...
T Consensus 263 ~~~~~~~~~~~~--------------------~~---~~~~~~~~~~~~----~~~~-~l~~~~~~~~~-----~~~--- 306 (510)
T 2oca_A 263 RDGKANIMQYVG--------------------MF---GEIFKPVTTSKL----MEDG-QVTELKINSIF-----LRY--- 306 (510)
T ss_dssp GGCSSCHHHHHH--------------------HH---CSEECCCCCC--------------CCEEEEEE-----EEC---
T ss_pred CCCcccHHHhHH--------------------hh---CCeEEeeCHHHH----hhCC-cCCCceEEEEe-----ecC---
Confidence 765433221100 00 000000000000 0000 00000000000 000
Q ss_pred chhhHHHhhhhccCCcccccccccccccccc-ccccccccCchhhHHHHHHhhC---CC-cEEEEecchhhHHHHHHHHH
Q psy16310 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLT-ESKILCKHDEKDSYLYYFILQH---PG-RTLVFCNSISSVKRLTQLLT 565 (1493)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~l~~~---~~-~~IIF~~s~~~a~~L~~~L~ 565 (1493)
........ .. .... ..........+...+..++... ++ .+||||+ ...+..+++.|.
T Consensus 307 --~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~ 368 (510)
T 2oca_A 307 --PDEFTTKL--KG-------------KTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIK 368 (510)
T ss_dssp --CHHHHHHH--TT-------------CCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHH
T ss_pred --ChHHhccc--cc-------------cchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHH
Confidence 00000000 00 0000 0011112223444444444432 34 5566666 888999999999
Q ss_pred hcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEe-chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE
Q psy16310 566 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT-DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644 (1493)
Q Consensus 566 ~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaT-dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~ 644 (1493)
..+..+..+||+|++.+|..+++.|++|+.+||||| +++++|+|+|+|++||+|++|.++..|+||+||+||.|..|.+
T Consensus 369 ~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~ 448 (510)
T 2oca_A 369 NEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTI 448 (510)
T ss_dssp TTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCC
T ss_pred HcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCce
Confidence 988899999999999999999999999999999999 9999999999999999999999999999999999999988756
Q ss_pred EEEec
Q psy16310 645 VVLIE 649 (1493)
Q Consensus 645 i~l~~ 649 (1493)
+++++
T Consensus 449 v~i~~ 453 (510)
T 2oca_A 449 ATVWD 453 (510)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 66665
No 94
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2e-34 Score=354.84 Aligned_cols=273 Identities=21% Similarity=0.233 Sum_probs=194.4
Q ss_pred hhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEE
Q psy16310 183 PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262 (1493)
Q Consensus 183 ~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 262 (1493)
+.++.+++++|++||||||||++|++|+++.+.. .+.++
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------------------------------------~~~~~ 53 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------------------------------------QRLRT 53 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------------------------------------TTCCE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------------------------------------CCCcE
Confidence 4567788999999999999999999999987742 23579
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEE
Q psy16310 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 342 (1493)
Q Consensus 263 LiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lVi 342 (1493)
||++|||+||.|+++.+. ++.+....+..... -..+..+.++|.+.+...+... ..+.++++|||
T Consensus 54 lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iVi 118 (459)
T 2z83_A 54 AVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVM 118 (459)
T ss_dssp EEEECSHHHHHHHHHHTT------TSCEEECC-------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEE
T ss_pred EEECchHHHHHHHHHHhc------CceEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEE
Confidence 999999999999999885 22232222221111 1233467889999887766543 23668999999
Q ss_pred ecCch-----hhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhh
Q psy16310 343 DETDR-----MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 417 (1493)
Q Consensus 343 DEAh~-----ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~ 417 (1493)
||||+ ++..++... + . .....|+++||||++..+..+
T Consensus 119 DEaH~~~~~~~~~~~~~~~---~---~--------------------------------~~~~~~~il~SAT~~~~~~~~ 160 (459)
T 2z83_A 119 DEAHFTDPASIAARGYIAT---K---V--------------------------------ELGEAAAIFMTATPPGTTDPF 160 (459)
T ss_dssp SSTTCCSHHHHHHHHHHHH---H---H--------------------------------HTTSCEEEEECSSCTTCCCSS
T ss_pred ECCccCCchhhHHHHHHHH---H---h--------------------------------ccCCccEEEEEcCCCcchhhh
Confidence 99998 333322111 1 0 023579999999998654322
Q ss_pred hhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHH
Q psy16310 418 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497 (1493)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1493)
... ..+ +.... . ..+.
T Consensus 161 ~~~--------------------------~~p-i~~~~-----------------~------------~~~~-------- 176 (459)
T 2z83_A 161 PDS--------------------------NAP-IHDLQ-----------------D------------EIPD-------- 176 (459)
T ss_dssp CCC--------------------------SSC-EEEEE-----------------C------------CCCS--------
T ss_pred ccC--------------------------CCC-eEEec-----------------c------------cCCc--------
Confidence 110 000 00000 0 0000
Q ss_pred hhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccC
Q psy16310 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577 (1493)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~ 577 (1493)
.....+..++....+++||||+++..++.++..|...++.+..+||.
T Consensus 177 ---------------------------------~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~ 223 (459)
T 2z83_A 177 ---------------------------------RAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK 223 (459)
T ss_dssp ---------------------------------SCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT
T ss_pred ---------------------------------chhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH
Confidence 00000112234456899999999999999999999999999999995
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE--------------------ecCCCChHHHHHHHhcccc
Q psy16310 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------------------YHVPRTSEIYIHRSGRTAR 637 (1493)
Q Consensus 578 ~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~--------------------yd~P~s~~~yiQR~GRagR 637 (1493)
+|..+++.|++|+.+|||||+++++|||+|+ ++||+ ||+|.+..+|+||+|||||
T Consensus 224 ----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR 298 (459)
T 2z83_A 224 ----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR 298 (459)
T ss_dssp ----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSC
T ss_pred ----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCC
Confidence 6788999999999999999999999999999 99999 7899999999999999999
Q ss_pred CCC-CCeEEEEecCC
Q psy16310 638 ANN-EGLTVVLIESD 651 (1493)
Q Consensus 638 ~g~-~G~~i~l~~~~ 651 (1493)
.|. +|.|++|+++.
T Consensus 299 ~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 299 NPNQVGDEYHYGGAT 313 (459)
T ss_dssp CTTCCCEEEEECSCC
T ss_pred CCCCCCeEEEEEccc
Confidence 997 89999999886
No 95
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.9e-33 Score=350.67 Aligned_cols=316 Identities=17% Similarity=0.152 Sum_probs=216.7
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..|+|+|.++++.+ ..++++++++|||+|||++|+.++...
T Consensus 92 ~~l~~~Q~~ai~~i-~~~~~~ll~~~TGsGKT~~~l~~i~~~-------------------------------------- 132 (472)
T 2fwr_A 92 ISLRDYQEKALERW-LVDKRGCIVLPTGSGKTHVAMAAINEL-------------------------------------- 132 (472)
T ss_dssp CCBCHHHHHHHHHH-TTTTEEEEECCTTSCHHHHHHHHHHHH--------------------------------------
T ss_pred CCcCHHHHHHHHHH-HhcCCEEEEeCCCCCHHHHHHHHHHHc--------------------------------------
Confidence 37999999999854 456789999999999999999987642
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcE-EEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCc
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~-v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~ 947 (1493)
+.++||||||++|+.|+++.+..+ +++ +..++|+.. ...+|+|+||+.+...+..-
T Consensus 133 -------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~--- 189 (472)
T 2fwr_A 133 -------STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL--- 189 (472)
T ss_dssp -------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH---
T ss_pred -------CCCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh---
Confidence 235999999999999999999884 578 888888754 24699999999987665421
Q ss_pred cccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH--HhhhccC------------
Q psy16310 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS--LNLKKGQ------------ 1013 (1493)
Q Consensus 948 ~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~--~~~~~~~------------ 1013 (1493)
..++++|||||||++...++. .++..+ ...+++++|||+.+..... +....+.
T Consensus 190 ---~~~~~liIvDEaH~~~~~~~~----~~~~~~------~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 256 (472)
T 2fwr_A 190 ---GNRFMLLIFDEVHHLPAESYV----QIAQMS------IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAG 256 (472)
T ss_dssp ---TTTCSEEEEETGGGTTSTTTH----HHHHTC------CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTS
T ss_pred ---cCCCCEEEEECCcCCCChHHH----HHHHhc------CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhc
Confidence 135899999999999887664 344444 3568999999998421110 0000000
Q ss_pred --cCcc---ccc-CCCchhHHHHhH----h-ccCCCcEEeccccccccccc-----------------eeeEEEecccch
Q psy16310 1014 --SKSK---KVS-KGDPSIKRLQDL----L-NIKSPKIVDLTEKIGITKTL-----------------TESKILCKHDEK 1065 (1493)
Q Consensus 1014 --~~~~---~~~-~~~~~~~~l~~~----~-~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~k 1065 (1493)
.... .+. ...+........ + ..-....+.+.........+ ....+.+....+
T Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 336 (472)
T 2fwr_A 257 KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNK 336 (472)
T ss_dssp CCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHH
T ss_pred CcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHH
Confidence 0000 000 000000000000 0 00000000000000000000 000011334456
Q ss_pred hhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCC
Q psy16310 1066 DSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144 (1493)
Q Consensus 1066 ~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip 1144 (1493)
...+..++... ++++||||+++..++.++..|. +..+||+|+..+|..++++|++|+++|||||+++++|+|+|
T Consensus 337 ~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp 411 (472)
T 2fwr_A 337 IRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVP 411 (472)
T ss_dssp HHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSC
T ss_pred HHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccc
Confidence 66677766665 6799999999999999999883 66799999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCChhHHHHHHhccCCCCCC-CeE--EEEecCC
Q psy16310 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNE-GLT--LVLIESD 1184 (1493)
Q Consensus 1145 ~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~-G~~--i~l~~~~ 1184 (1493)
++++||+|++|.++..|+||+||+||.|.. +.+ +.|+..+
T Consensus 412 ~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 412 DANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred cCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999999999999999999999854 344 4455544
No 96
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.3e-33 Score=342.51 Aligned_cols=269 Identities=18% Similarity=0.193 Sum_probs=191.1
Q ss_pred CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEccc
Q psy16310 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PT 885 (1493)
|++++++||||||||++|++|+++.+.. .+.+++|++||
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~-----------------------------------------~g~~~lvl~Pt 40 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK-----------------------------------------KRLRTVILAPT 40 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH-----------------------------------------TTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh-----------------------------------------CCCCEEEECcH
Confidence 6899999999999999999999966532 23479999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchh
Q psy16310 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 965 (1493)
Q Consensus 886 reLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~l 965 (1493)
++||.|+++.+. ++.+....|+... .-..+..+.+.|.+.+...+... ..+.++++|||||||++
T Consensus 41 ~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~ 105 (431)
T 2v6i_A 41 RVVASEMYEALR------GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL 105 (431)
T ss_dssp HHHHHHHHHHTT------TSCEEEC--------------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC
T ss_pred HHHHHHHHHHhC------CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC
Confidence 999999998775 3555555554221 11123457778999887666542 23678999999999996
Q ss_pred ccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccc
Q psy16310 966 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 1045 (1493)
Q Consensus 966 l~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1045 (1493)
..++......+.... .+...|+++||||+++.+.... . ....+..+..
T Consensus 106 -~~~~~~~~~~l~~~~----~~~~~~~l~~SAT~~~~~~~~~-------------~--------------~~~~i~~~~~ 153 (431)
T 2v6i_A 106 -DPASVAARGYIETRV----SMGDAGAIFMTATPPGTTEAFP-------------P--------------SNSPIIDEET 153 (431)
T ss_dssp -SHHHHHHHHHHHHHH----HTTSCEEEEEESSCTTCCCSSC-------------C--------------CSSCCEEEEC
T ss_pred -CccHHHHHHHHHHHh----hCCCCcEEEEeCCCCcchhhhc-------------C--------------CCCceeeccc
Confidence 322223333333322 1357899999999986432111 0 0011111100
Q ss_pred cccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc
Q psy16310 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125 (1493)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~ 1125 (1493)
.. + ..+...++.++...++++||||+++..++.++..|+..++.+..+||+ +|..+++.|++
T Consensus 154 ~~-------------~-~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~ 215 (431)
T 2v6i_A 154 RI-------------P-DKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKS 215 (431)
T ss_dssp CC-------------C-SSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHH
T ss_pred cC-------------C-HHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcC
Confidence 00 0 011112234455667899999999999999999999999999999997 57889999999
Q ss_pred CCCCeEEeehhhhccccCCCccE-----------------EEEecCCCChhHHHHHHhccCCCCC-CCeEEEEe
Q psy16310 1126 QNNSILLATDVAARGLDIPGIEH-----------------VIHYHVPRTSEIYIHRSGRTARANN-EGLTLVLI 1181 (1493)
Q Consensus 1126 g~~~VLVaTdv~~~GiDip~v~~-----------------VI~~d~p~s~~~yiqr~GR~gR~g~-~G~~i~l~ 1181 (1493)
|+++|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+||.|. .|.++++.
T Consensus 216 g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 216 EKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp SCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999999999999999999 554 6789999999999999999999985 45555554
No 97
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.6e-33 Score=351.63 Aligned_cols=308 Identities=17% Similarity=0.171 Sum_probs=213.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHH
Q psy16310 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 855 (1493)
Q Consensus 776 ~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1493)
....++++.++++ |..++ .... ...|++++++||||||||+ +++..+...
T Consensus 130 ~~d~l~~i~dl~~--p~~~~--p~ar-~l~rk~vlv~apTGSGKT~----~al~~l~~~--------------------- 179 (677)
T 3rc3_A 130 CKDDLRKISDLRI--PPNWY--PDAR-AMQRKIIFHSGPTNSGKTY----HAIQKYFSA--------------------- 179 (677)
T ss_dssp CHHHHHHHTBCCC--GGGGC--HHHH-TSCCEEEEEECCTTSSHHH----HHHHHHHHS---------------------
T ss_pred CHHHHHHHhhccC--hhhhC--HHHH-hcCCCEEEEEcCCCCCHHH----HHHHHHHhc---------------------
Confidence 4445555644443 43332 2222 2367899999999999998 444444321
Q ss_pred HHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcH
Q psy16310 856 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935 (1493)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 935 (1493)
..++|++|||+||.|+++.+... ++++..++|+..... ..-....+++++|++
T Consensus 180 ---------------------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e 232 (677)
T 3rc3_A 180 ---------------------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVE 232 (677)
T ss_dssp ---------------------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGG
T ss_pred ---------------------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHh
Confidence 12599999999999999999886 478889998754300 000012456666665
Q ss_pred HHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcC
Q psy16310 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015 (1493)
Q Consensus 936 rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~ 1015 (1493)
.+ .....+++|||||||++++.++...+..++..+. ....+++++|||.+. +....... +
T Consensus 233 ~~-----------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~----~~~i~il~~SAT~~~-i~~l~~~~-~--- 292 (677)
T 3rc3_A 233 MC-----------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC----AEEVHLCGEPAAIDL-VMELMYTT-G--- 292 (677)
T ss_dssp GC-----------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC----EEEEEEEECGGGHHH-HHHHHHHH-T---
T ss_pred Hh-----------hhcccCCEEEEecceecCCccchHHHHHHHHccC----ccceEEEeccchHHH-HHHHHHhc-C---
Confidence 43 1245689999999999999999999998888774 256899999999632 22111100 0
Q ss_pred cccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHH
Q psy16310 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 1095 (1493)
Q Consensus 1016 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~ 1095 (1493)
....+.... ....+ ...... . ..+.......||||+|+..++.++.
T Consensus 293 ---------------------~~~~v~~~~---r~~~l---~~~~~~---l----~~l~~~~~g~iIf~~s~~~ie~la~ 338 (677)
T 3rc3_A 293 ---------------------EEVEVRDYK---RLTPI---SVLDHA---L----ESLDNLRPGDCIVCFSKNDIYSVSR 338 (677)
T ss_dssp ---------------------CCEEEEECC---CSSCE---EECSSC---C----CSGGGCCTTEEEECSSHHHHHHHHH
T ss_pred ---------------------CceEEEEee---ecchH---HHHHHH---H----HHHHhcCCCCEEEEcCHHHHHHHHH
Confidence 000000000 00000 000000 0 0111224556899999999999999
Q ss_pred HHHhcCCCccccccCCCHHHHHHHHHHHhc--CCCCeEEeehhhhccccCCCccEEEEecC--------------CCChh
Q psy16310 1096 LLTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNNSILLATDVAARGLDIPGIEHVIHYHV--------------PRTSE 1159 (1493)
Q Consensus 1096 ~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~--g~~~VLVaTdv~~~GiDip~v~~VI~~d~--------------p~s~~ 1159 (1493)
.|...++.+..+||+|++.+|..+++.|++ |.++|||||+++++|||+ +|++||++++ |.+..
T Consensus 339 ~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~ 417 (677)
T 3rc3_A 339 QIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTS 417 (677)
T ss_dssp HHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHH
T ss_pred HHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHH
Confidence 999999999999999999999999999999 899999999999999999 9999999999 77999
Q ss_pred HHHHHHhccCCCCCC---CeEEEEecCCCHHHHHHHHHhc
Q psy16310 1160 IYIHRSGRTARANNE---GLTLVLIESDEIPLYIKMFNSL 1196 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~---G~~i~l~~~~e~~~~~~~~~~~ 1196 (1493)
+|+||+|||||.|.. |.|+++ .+.+...+.+++...
T Consensus 418 ~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~ 456 (677)
T 3rc3_A 418 QALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLKEILKRP 456 (677)
T ss_dssp HHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHHHHHHSC
T ss_pred HHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHHHHHhcC
Confidence 999999999999965 554444 555666666666543
No 98
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.1e-32 Score=336.39 Aligned_cols=269 Identities=18% Similarity=0.195 Sum_probs=187.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEccc
Q psy16310 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PT 268 (1493)
|+|++++||||||||++|++|+++.+.. .+.+++||+||
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~-----------------------------------------~g~~~lvl~Pt 40 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK-----------------------------------------KRLRTVILAPT 40 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH-----------------------------------------TTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh-----------------------------------------CCCCEEEECcH
Confidence 6899999999999999999999976642 23579999999
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchh
Q psy16310 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 348 (1493)
Q Consensus 269 reLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~l 348 (1493)
++||.|+++.+. ++.+....|+... .-..+.-+.++|.+.+...+... . .+.++++|||||||++
T Consensus 41 ~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~-~---~~~~l~~vViDEaH~~ 105 (431)
T 2v6i_A 41 RVVASEMYEALR------GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQG-V---RVPNYNLYIMDEAHFL 105 (431)
T ss_dssp HHHHHHHHHHTT------TSCEEEC--------------CCCSEEEEEHHHHHHHHHHT-C---CCCCCSEEEEESTTCC
T ss_pred HHHHHHHHHHhC------CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhcC-c---cccCCCEEEEeCCccC
Confidence 999999998774 3455555554321 11123467788999887666542 2 2558899999999987
Q ss_pred hhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccc
Q psy16310 349 IESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSK 428 (1493)
Q Consensus 349 l~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~ 428 (1493)
+.++......+..... ...+|+++||||+++.+..+...
T Consensus 106 -~~~~~~~~~~l~~~~~--------------------------------~~~~~~l~~SAT~~~~~~~~~~~-------- 144 (431)
T 2v6i_A 106 -DPASVAARGYIETRVS--------------------------------MGDAGAIFMTATPPGTTEAFPPS-------- 144 (431)
T ss_dssp -SHHHHHHHHHHHHHHH--------------------------------TTSCEEEEEESSCTTCCCSSCCC--------
T ss_pred -CccHHHHHHHHHHHhh--------------------------------CCCCcEEEEeCCCCcchhhhcCC--------
Confidence 3333333333322210 23579999999998643221100
Q ss_pred cccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccc
Q psy16310 429 KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508 (1493)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1493)
......... ..+
T Consensus 145 -------------------~~~i~~~~~-----------------------------~~~-------------------- 156 (431)
T 2v6i_A 145 -------------------NSPIIDEET-----------------------------RIP-------------------- 156 (431)
T ss_dssp -------------------SSCCEEEEC-----------------------------CCC--------------------
T ss_pred -------------------CCceeeccc-----------------------------cCC--------------------
Confidence 000000000 000
Q ss_pred cccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHH
Q psy16310 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588 (1493)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~ 588 (1493)
..+...+..++...++++||||+++..++.++..|...++.+..+||+ +|..+++
T Consensus 157 ---------------------~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~ 211 (431)
T 2v6i_A 157 ---------------------DKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYP 211 (431)
T ss_dssp ---------------------SSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTT
T ss_pred ---------------------HHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHH
Confidence 000000112334456799999999999999999999999999999997 5778999
Q ss_pred HHhcCCCeEEEEechhhccCCCCCCcE-----------------EEEecCCCChHHHHHHHhccccCCCC-CeEEEEe
Q psy16310 589 RFRDQNNSILLATDVAARGLDIPGIEH-----------------VIHYHVPRTSEIYIHRSGRTARANNE-GLTVVLI 648 (1493)
Q Consensus 589 ~Fr~g~~~VLVaTdv~~rGlDip~v~~-----------------VI~yd~P~s~~~yiQR~GRagR~g~~-G~~i~l~ 648 (1493)
.|++|+.+|||||+++++|+|+| +.+ ||+|+.|.+..+|+||+||+||.|.. |.++++.
T Consensus 212 ~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 212 KCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred hhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999999999999 654 68899999999999999999999854 5555554
No 99
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.8e-32 Score=341.84 Aligned_cols=342 Identities=18% Similarity=0.168 Sum_probs=218.6
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+|+|.++++ .+..++++++++|||+|||++|++++...
T Consensus 93 ~l~~~Q~~ai~-~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------------------------------------- 132 (472)
T 2fwr_A 93 SLRDYQEKALE-RWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------------------------------- 132 (472)
T ss_dssp CBCHHHHHHHH-HHTTTTEEEEECCTTSCHHHHHHHHHHHH---------------------------------------
T ss_pred CcCHHHHHHHH-HHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------------------------------------
Confidence 69999999998 45566789999999999999999987632
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeE-EEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~-v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~ 331 (1493)
+.++|||+||++|+.|+.+.|..+ ++. +..++|+... .++|+|+||+.|...+.. +
T Consensus 133 ------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~----~ 189 (472)
T 2fwr_A 133 ------STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK----L 189 (472)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH----H
T ss_pred ------CCCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH----h
Confidence 235999999999999999999884 677 8888887642 469999999999776542 1
Q ss_pred cccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccc
Q psy16310 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411 (1493)
Q Consensus 332 ~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~ 411 (1493)
..++++|||||||++...++.. ++..+ ...+++++|||+.
T Consensus 190 --~~~~~liIvDEaH~~~~~~~~~----~~~~~----------------------------------~~~~~l~lSATp~ 229 (472)
T 2fwr_A 190 --GNRFMLLIFDEVHHLPAESYVQ----IAQMS----------------------------------IAPFRLGLTATFE 229 (472)
T ss_dssp --TTTCSEEEEETGGGTTSTTTHH----HHHTC----------------------------------CCSEEEEEESCCC
T ss_pred --cCCCCEEEEECCcCCCChHHHH----HHHhc----------------------------------CCCeEEEEecCcc
Confidence 1258999999999998665532 33322 2357899999997
Q ss_pred hhhhhhhhhhccccccccccCCCchhhhHHhhhhccC--CcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCC
Q psy16310 412 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489 (1493)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1493)
+.-.... .+..++.... .....+...+ ........+.+.........+.
T Consensus 230 ~~~~~~~--------------------~l~~~~~~~~~~~~~~~l~~~~--l~~~~~~~~~~~~~~~~~~~~~------- 280 (472)
T 2fwr_A 230 REDGRHE--------------------ILKEVVGGKVFELFPDSLAGKH--LAKYTIKRIFVPLAEDERVEYE------- 280 (472)
T ss_dssp CTTSGGG--------------------SHHHHTCCEEEECCHHHHTSCC--CCSEEECCEEECCCHHHHHHTT-------
T ss_pred CCCCHHH--------------------HHHHHhCCeEeecCHHHHhcCc--CCCeEEEEEEcCCCHHHHHHHH-------
Confidence 4211100 0000000000 0000000000 0000000000000000000000
Q ss_pred cchhhHHHhhhhccC------Ccccccccccc--------ccccccccccccccCchhhHHHHHHhhC-CCcEEEEecch
Q psy16310 490 RTLCEEIQDLLNIKS------PKIVDLTEKIG--------ITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSI 554 (1493)
Q Consensus 490 ~~~~~~~~~~~~~~~------~~~~~~~~~~~--------~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~ 554 (1493)
.....+........ ........... .........+.+....|...+..++... ++++||||+++
T Consensus 281 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~ 359 (472)
T 2fwr_A 281 -KREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHN 359 (472)
T ss_dssp -TTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCH
T ss_pred -HHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCH
Confidence 00000000000000 00000000000 0000001112344566777888887765 57999999999
Q ss_pred hhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhc
Q psy16310 555 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634 (1493)
Q Consensus 555 ~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GR 634 (1493)
..++.++..|. +..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.|+..|+||+||
T Consensus 360 ~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR 434 (472)
T 2fwr_A 360 ELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR 434 (472)
T ss_dssp HHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhh
Confidence 99999999873 6679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC-C--eEEEEecCCc
Q psy16310 635 TARANNE-G--LTVVLIESDE 652 (1493)
Q Consensus 635 agR~g~~-G--~~i~l~~~~e 652 (1493)
+||.|.. + .++.|++.+.
T Consensus 435 ~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 435 ILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SBCCCTTTCCEEEEEEEECSC
T ss_pred ccCCCCCCceEEEEEEEeCCC
Confidence 9999843 2 4455666543
No 100
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=4.5e-32 Score=342.63 Aligned_cols=272 Identities=18% Similarity=0.199 Sum_probs=194.7
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcc
Q psy16310 188 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~P 267 (1493)
.+++++++||||||||+ ++++.+... ..++|++|
T Consensus 154 ~rk~vlv~apTGSGKT~----~al~~l~~~------------------------------------------~~gl~l~P 187 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY----HAIQKYFSA------------------------------------------KSGVYCGP 187 (677)
T ss_dssp CCEEEEEECCTTSSHHH----HHHHHHHHS------------------------------------------SSEEEEES
T ss_pred CCCEEEEEcCCCCCHHH----HHHHHHHhc------------------------------------------CCeEEEeC
Confidence 67899999999999999 344444321 12599999
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCch
Q psy16310 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347 (1493)
Q Consensus 268 TreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ 347 (1493)
||+||.|+++.+... ++.+..++|+..... ..-....+++++|++.+ ..+..+++|||||||+
T Consensus 188 tR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~-----------~l~~~v~lvVIDEaH~ 250 (677)
T 3rc3_A 188 LKLLAHEIFEKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMC-----------SVTTPYEVAVIDEIQM 250 (677)
T ss_dssp SHHHHHHHHHHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGC-----------CSSSCEEEEEECSGGG
T ss_pred HHHHHHHHHHHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHh-----------hhcccCCEEEEeccee
Confidence 999999999999886 678888999864300 00001245666666543 1234679999999999
Q ss_pred hhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhcccccc
Q psy16310 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 427 (1493)
Q Consensus 348 ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~ 427 (1493)
+++.++...+..++..+. ....+++++|||.+. +..+.....
T Consensus 251 l~d~~~g~~~~~~l~~l~--------------------------------~~~i~il~~SAT~~~-i~~l~~~~~----- 292 (677)
T 3rc3_A 251 IRDPARGWAWTRALLGLC--------------------------------AEEVHLCGEPAAIDL-VMELMYTTG----- 292 (677)
T ss_dssp GGCTTTHHHHHHHHHHCC--------------------------------EEEEEEEECGGGHHH-HHHHHHHHT-----
T ss_pred cCCccchHHHHHHHHccC--------------------------------ccceEEEeccchHHH-HHHHHHhcC-----
Confidence 999999998888887663 134689999999532 222111000
Q ss_pred ccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcc
Q psy16310 428 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507 (1493)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1493)
.. ..+. .. .. ..+.
T Consensus 293 ---------------------~~-~~v~----------~~-------~r--------------------------~~~l- 306 (677)
T 3rc3_A 293 ---------------------EE-VEVR----------DY-------KR--------------------------LTPI- 306 (677)
T ss_dssp ---------------------CC-EEEE----------EC-------CC--------------------------SSCE-
T ss_pred ---------------------Cc-eEEE----------Ee-------ee--------------------------cchH-
Confidence 00 0000 00 00 0000
Q ss_pred ccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHH
Q psy16310 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587 (1493)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl 587 (1493)
... ...+ ..+.....+.||||+++.+++.++..|...++.+..+||+|++.+|..++
T Consensus 307 -~~~-----~~~l-----------------~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~ 363 (677)
T 3rc3_A 307 -SVL-----DHAL-----------------ESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQA 363 (677)
T ss_dssp -EEC-----SSCC-----------------CSGGGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred -HHH-----HHHH-----------------HHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHH
Confidence 000 0000 00111234669999999999999999999999999999999999999999
Q ss_pred HHHhc--CCCeEEEEechhhccCCCCCCcEEEEecC--------------CCChHHHHHHHhccccCCCC---CeEEEEe
Q psy16310 588 DRFRD--QNNSILLATDVAARGLDIPGIEHVIHYHV--------------PRTSEIYIHRSGRTARANNE---GLTVVLI 648 (1493)
Q Consensus 588 ~~Fr~--g~~~VLVaTdv~~rGlDip~v~~VI~yd~--------------P~s~~~yiQR~GRagR~g~~---G~~i~l~ 648 (1493)
+.|++ |.++|||||+++++|||+ +|++||+||+ |.+..+|+||+|||||.|.. |.|++++
T Consensus 364 ~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 364 KKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp HHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS
T ss_pred HHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe
Confidence 99999 999999999999999999 8999999999 88999999999999999964 7777765
Q ss_pred cC
Q psy16310 649 ES 650 (1493)
Q Consensus 649 ~~ 650 (1493)
..
T Consensus 443 ~~ 444 (677)
T 3rc3_A 443 HE 444 (677)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 101
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=6.1e-32 Score=346.04 Aligned_cols=326 Identities=17% Similarity=0.181 Sum_probs=188.2
Q ss_pred CCCcHHHHhhHHHhhc----cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 789 KTPTKIQSMVMPSALL----ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~----~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
..|+|+|.++++.++. +++++++++|||||||++++. ++..++......
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~-------------------------- 229 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNR-------------------------- 229 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCS--------------------------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhccccc--------------------------
Confidence 4799999999986654 356799999999999999654 444443321100
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHH-HHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHh
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQ-NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~-~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~ 943 (1493)
.....+.++|||+||++|+.|++ +.++.++ ..+..+.++ ......+|+|+||++|...+..
T Consensus 230 ------~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~ 291 (590)
T 3h1t_A 230 ------TGDYRKPRILFLADRNVLVDDPKDKTFTPFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDERR 291 (590)
T ss_dssp ------SCSSSCCCEEEEEC-----------CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------
T ss_pred ------ccccCCCeEEEEeCCHHHHHHHHHHHHHhcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhcccccc
Confidence 01124568999999999999999 7666553 344444433 2335679999999999877642
Q ss_pred Cc-CccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCC
Q psy16310 944 GH-FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 1022 (1493)
Q Consensus 944 ~~-~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1493)
.. ........+++||+||||++...+ ...+..++..+ ...++++||||+............+....
T Consensus 292 ~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~------~~~~~l~lTATP~~~~~~~~~~~f~~~~~------ 358 (590)
T 3h1t_A 292 PGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYF------EPAFQIGMTATPLREDNRDTYRYFGNPIY------ 358 (590)
T ss_dssp CCGGGGSCTTSCSEEEESCCC----------CHHHHHHS------TTSEEEEEESSCSCTTTHHHHHHSCSCSE------
T ss_pred ccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhC------CcceEEEeccccccccchhHHHHcCCceE------
Confidence 21 111123468999999999987643 24556777766 34789999999885433222111111000
Q ss_pred CchhHHHHhHhccCCCcEEeccccccc-------------cccceeeEEEecc-------cchhhH----HHHHHHh--C
Q psy16310 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGI-------------TKTLTESKILCKH-------DEKDSY----LYYFILQ--H 1076 (1493)
Q Consensus 1023 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-------~~k~~~----l~~~l~~--~ 1076 (1493)
...+........+.+.....+...... ...+......... ..+... +..++.. .
T Consensus 359 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~ 438 (590)
T 3h1t_A 359 TYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDR 438 (590)
T ss_dssp EECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCT
T ss_pred ecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCC
Confidence 001111111111112221111110000 0000000000000 011112 2222222 2
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCC--------ccccccCCCHHHHHHHHHHHhcCCCC---eEEeehhhhccccCCC
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCS--------PLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPG 1145 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~--------~~~lhg~m~~~~R~~~~~~F~~g~~~---VLVaTdv~~~GiDip~ 1145 (1493)
.+++||||+++.+|+.++..|...+.. +..+||++++ +|..++++|++|+.. |||||+++++|+|+|+
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~ 517 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPT 517 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTT
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchh
Confidence 579999999999999999999876432 5678999864 799999999998876 8899999999999999
Q ss_pred ccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1146 IEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1146 v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
+++||++++|.+...|+||+||+||.+.
T Consensus 518 v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 518 CKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred eeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999999999999999999999875
No 102
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=7.7e-31 Score=295.69 Aligned_cols=202 Identities=34% Similarity=0.564 Sum_probs=177.2
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 764 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
+.++.+|.++++++.++++|.+.||..|+|+|.++||. +..|+|++++||||||||++|++|++..+.....
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~------- 96 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPV-ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF------- 96 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHH-HHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-------
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-------
Confidence 34567899999999999999999999999999999995 5577999999999999999999999988854211
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l 923 (1493)
.....++++|||+||++|+.|+++.++.++...++++..++||.....+...+
T Consensus 97 ---------------------------~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (242)
T 3fe2_A 97 ---------------------------LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 149 (242)
T ss_dssp ---------------------------CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ---------------------------cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHh
Confidence 01234668999999999999999999999888899999999999999888888
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|+||++|.+++..+.. .+.++++|||||||+|++++|...+..++..+ +..+|+++||||+++.+
T Consensus 150 ~~~~~I~v~Tp~~l~~~l~~~~~---~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~-----~~~~q~~~~SAT~~~~~ 221 (242)
T 3fe2_A 150 ERGVEICIATPGRLIDFLECGKT---NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDRQTLMWSATWPKEV 221 (242)
T ss_dssp HHCCSEEEECHHHHHHHHHHTSC---CCTTCCEEEETTHHHHHHTTCHHHHHHHHTTS-----CSSCEEEEEESCCCHHH
T ss_pred cCCCCEEEECHHHHHHHHHcCCC---CcccccEEEEeCHHHHhhhCcHHHHHHHHHhC-----CccceEEEEEeecCHHH
Confidence 88899999999999999987654 46688999999999999999999999998877 36789999999999888
Q ss_pred HhHHh
Q psy16310 1004 KNSLN 1008 (1493)
Q Consensus 1004 ~~~~~ 1008 (1493)
...+.
T Consensus 222 ~~~~~ 226 (242)
T 3fe2_A 222 RQLAE 226 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 103
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=4e-31 Score=306.40 Aligned_cols=204 Identities=26% Similarity=0.424 Sum_probs=168.4
Q ss_pred cCCCcchhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhh
Q psy16310 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNK 834 (1493)
Q Consensus 756 ~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~ 834 (1493)
...+++.+.....+|++++|++.++++|..+||..|||+|.++||.++.+ ++|++++||||||||++|++|+++++..
T Consensus 80 ~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~- 158 (300)
T 3fmo_B 80 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP- 158 (300)
T ss_dssp ECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT-
T ss_pred ccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc-
Confidence 33344445566788999999999999999999999999999999965543 4899999999999999999999987732
Q ss_pred cCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcC
Q psy16310 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGG 913 (1493)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg 913 (1493)
...++++|||+|||+||.|+++.++.++.+. ++.+..++||
T Consensus 159 --------------------------------------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~ 200 (300)
T 3fmo_B 159 --------------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG 200 (300)
T ss_dssp --------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTT
T ss_pred --------------------------------------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCC
Confidence 2345679999999999999999999998765 6888889888
Q ss_pred CCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceE
Q psy16310 914 MSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQT 992 (1493)
Q Consensus 914 ~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ 992 (1493)
....... ..+++|+|||||+|++++.+.. ...+.++++|||||||+|++ .+|...+..++..+ +..+|+
T Consensus 201 ~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~--~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~-----~~~~q~ 270 (300)
T 3fmo_B 201 NKLERGQ---KISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML-----PRNCQM 270 (300)
T ss_dssp CCCCTTC---CCCCSEEEECHHHHHHHHTTTC--CCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS-----CTTCEE
T ss_pred ccHhhhh---cCCCCEEEECHHHHHHHHHhcC--CCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC-----CCCCEE
Confidence 7643322 4567999999999999996532 13467899999999999998 68888888887766 467899
Q ss_pred EEEecccccchHhHHh
Q psy16310 993 FVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 993 ll~SATl~~~~~~~~~ 1008 (1493)
++||||++..+..++.
T Consensus 271 i~~SAT~~~~v~~~a~ 286 (300)
T 3fmo_B 271 LLFSATFEDSVWKFAQ 286 (300)
T ss_dssp EEEESCCCHHHHHHHH
T ss_pred EEEeccCCHHHHHHHH
Confidence 9999999988877654
No 104
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=1.3e-28 Score=298.45 Aligned_cols=152 Identities=21% Similarity=0.211 Sum_probs=122.6
Q ss_pred EEEecccchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEe
Q psy16310 1057 KILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133 (1493)
Q Consensus 1057 ~~~~~~~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVa 1133 (1493)
.+.....+|...+...+.. .+.++||||+|+..++.|+..|...|+.+..+||++.+++|..+...|+.| .|+||
T Consensus 451 ~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVA 528 (822)
T 3jux_A 451 LVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIA 528 (822)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEE
T ss_pred EEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEE
Confidence 4556667788888877764 367999999999999999999999999999999996666666666666655 69999
Q ss_pred ehhhhccccCC--------CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHH-------HHHHHHHhccc
Q psy16310 1134 TDVAARGLDIP--------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP-------LYIKMFNSLEK 1198 (1493)
Q Consensus 1134 Tdv~~~GiDip--------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~-------~~~~~~~~~~~ 1198 (1493)
|++++||+||+ +..+||+|++|.+...|+||+|||||+|.+|.+++|++..|.. .+..++..++.
T Consensus 529 TdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~ 608 (822)
T 3jux_A 529 TNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKI 608 (822)
T ss_dssp ETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSC
T ss_pred cchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCC
Confidence 99999999998 6679999999999999999999999999999999999988832 34445555443
Q ss_pred cCCCCCCCCChHHHH
Q psy16310 1199 KVDLPDFPIDESVLS 1213 (1493)
Q Consensus 1199 ~~~~~~~p~~~~~~~ 1213 (1493)
. +..|+....+.
T Consensus 609 ~---~~~~i~~~~v~ 620 (822)
T 3jux_A 609 E---EGQPIQHPMLS 620 (822)
T ss_dssp C---SSSCBCCHHHH
T ss_pred C---CCceeccHHHH
Confidence 2 23466655433
No 105
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=4.1e-30 Score=289.72 Aligned_cols=202 Identities=34% Similarity=0.564 Sum_probs=175.5
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
.+..+|.++++++.+++.+.+.||..|+++|.++++ .+..|+|++++||||||||++|++|++.++......
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~------- 97 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWP-VALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL------- 97 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHH-HHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-------
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-------
Confidence 456789999999999999999999999999999998 455789999999999999999999999888642110
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
....++++|||+||++||.|+++.+..+....++++..++|+.....+...+.
T Consensus 98 ---------------------------~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 150 (242)
T 3fe2_A 98 ---------------------------ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE 150 (242)
T ss_dssp ---------------------------CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred ---------------------------ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc
Confidence 11345679999999999999999999998888899999999999999888888
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.+++|+|+||++|.+++...... +.++++|||||||++++++|...+..++..+
T Consensus 151 ~~~~I~v~Tp~~l~~~l~~~~~~---~~~~~~lViDEah~l~~~~~~~~~~~i~~~~----------------------- 204 (242)
T 3fe2_A 151 RGVEICIATPGRLIDFLECGKTN---LRRTTYLVLDEADRMLDMGFEPQIRKIVDQI----------------------- 204 (242)
T ss_dssp HCCSEEEECHHHHHHHHHHTSCC---CTTCCEEEETTHHHHHHTTCHHHHHHHHTTS-----------------------
T ss_pred CCCCEEEECHHHHHHHHHcCCCC---cccccEEEEeCHHHHhhhCcHHHHHHHHHhC-----------------------
Confidence 88999999999999999876543 5588999999999999999999999998765
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
++.+|+++||||+|+.+..++..
T Consensus 205 ----------~~~~q~~~~SAT~~~~~~~~~~~ 227 (242)
T 3fe2_A 205 ----------RPDRQTLMWSATWPKEVRQLAED 227 (242)
T ss_dssp ----------CSSCEEEEEESCCCHHHHHHHHH
T ss_pred ----------CccceEEEEEeecCHHHHHHHHH
Confidence 34579999999999988776643
No 106
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=300.05 Aligned_cols=203 Identities=26% Similarity=0.429 Sum_probs=165.5
Q ss_pred CCCcccccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcc-CCcEEEEccCCCchhHHHHHHHHHHHHhhcc
Q psy16310 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219 (1493)
Q Consensus 141 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dviv~apTGSGKTl~~~lpil~~l~~~~~ 219 (1493)
.+.+.+.....+|.+++|++.++++|..+||..||++|.++||.++.+ ++|+|++||||||||++|++|+++++..
T Consensus 82 ~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~--- 158 (300)
T 3fmo_B 82 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP--- 158 (300)
T ss_dssp SSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT---
T ss_pred CCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc---
Confidence 333444556788999999999999999999999999999999955533 3899999999999999999999987632
Q ss_pred CCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCC
Q psy16310 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMS 298 (1493)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~ 298 (1493)
...++++|||+|||+||.|+++.+..++... ++.+..++|+..
T Consensus 159 ------------------------------------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (300)
T 3fmo_B 159 ------------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK 202 (300)
T ss_dssp ------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCC
T ss_pred ------------------------------------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCcc
Confidence 1345679999999999999999999998764 688888988866
Q ss_pred HHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCcccccc
Q psy16310 299 TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMI 377 (1493)
Q Consensus 299 ~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~ 377 (1493)
.... ...+++|+||||++|++++.+.. ...+.++++|||||||+|++ .+|...+..|+..+
T Consensus 203 ~~~~---~~~~~~IlV~TP~~l~~~l~~~~--~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~------------- 264 (300)
T 3fmo_B 203 LERG---QKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML------------- 264 (300)
T ss_dssp CCTT---CCCCCSEEEECHHHHHHHHTTTC--CCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS-------------
T ss_pred Hhhh---hcCCCCEEEECHHHHHHHHHhcC--CCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC-------------
Confidence 4332 14567999999999999996522 12356899999999999998 68888888887654
Q ss_pred ccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||+++.+..++..
T Consensus 265 --------------------~~~~q~i~~SAT~~~~v~~~a~~ 287 (300)
T 3fmo_B 265 --------------------PRNCQMLLFSATFEDSVWKFAQK 287 (300)
T ss_dssp --------------------CTTCEEEEEESCCCHHHHHHHHH
T ss_pred --------------------CCCCEEEEEeccCCHHHHHHHHH
Confidence 34579999999999988776653
No 107
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=2.9e-30 Score=343.67 Aligned_cols=364 Identities=16% Similarity=0.194 Sum_probs=230.5
Q ss_pred CCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 789 KTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
..|+|+|..++..++.. +.++|++++||+|||++++..+...+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~---------------------------------- 197 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS---------------------------------- 197 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----------------------------------
Confidence 47999999999866643 4588999999999999988777655422
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH--HhcCCCcEEEECcHHHHHHHHhCc
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR--ILNKCPHILVATPGRLWEFIQLGH 945 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~--~l~~~~~IlV~TP~rl~~~l~~~~ 945 (1493)
....++|||||+ .|+.|+...+.+.+ ++++..+.|+........ ......+|+|+|++.+..... .
T Consensus 198 ------g~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~--~ 265 (968)
T 3dmq_A 198 ------GAAERVLIIVPE-TLQHQWLVEMLRRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQ--R 265 (968)
T ss_dssp ------SSCCCEEEECCT-TTHHHHHHHHHHHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTT--T
T ss_pred ------CCCCeEEEEeCH-HHHHHHHHHHHHHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHH--H
Confidence 223369999999 99999999997654 466655554322211111 111246899999998753210 0
Q ss_pred CccccccceeEEEecccchhccCCChh-HHHHHHHHhcccCCCCCceEEEEeccccc-ch---HhHHhhhccCcCcc---
Q psy16310 946 FHLTELYKINYLVIDETDRMIESGHFP-ELKNILDRVTMTETSQPRQTFVFSATLTH-SL---KNSLNLKKGQSKSK--- 1017 (1493)
Q Consensus 946 ~~~~~l~~l~~lVlDEah~ll~~~~~~-~l~~il~~l~~~~~~~~~q~ll~SATl~~-~~---~~~~~~~~~~~~~~--- 1017 (1493)
.......++++|||||||++...+... .....+..+. .....++++|||+.. .. ...+..........
T Consensus 266 ~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~----~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~ 341 (968)
T 3dmq_A 266 LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA----EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQ 341 (968)
T ss_dssp THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH----TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHH
T ss_pred HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh----hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHH
Confidence 000113368999999999996554321 2233333332 133568999999853 11 11111000000000
Q ss_pred ---------------------------------cccC-----------------CCchh-HHHHhHhccC--CCcEEecc
Q psy16310 1018 ---------------------------------KVSK-----------------GDPSI-KRLQDLLNIK--SPKIVDLT 1044 (1493)
Q Consensus 1018 ---------------------------------~~~~-----------------~~~~~-~~l~~~~~~~--~~~~~~~~ 1044 (1493)
.... ..... ..+...+... ....+...
T Consensus 342 f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~ 421 (968)
T 3dmq_A 342 FVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNT 421 (968)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCC
T ss_pred HHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhh
Confidence 0000 00000 0000000000 00000000
Q ss_pred ccc--cc-ccccee---------------------------------------------eEEEecccchhhHHHHHHHhC
Q psy16310 1045 EKI--GI-TKTLTE---------------------------------------------SKILCKHDEKDSYLYYFILQH 1076 (1493)
Q Consensus 1045 ~~~--~~-~~~~~~---------------------------------------------~~~~~~~~~k~~~l~~~l~~~ 1076 (1493)
... .. ...... ....+....|...+..++...
T Consensus 422 r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~ 501 (968)
T 3dmq_A 422 RNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSH 501 (968)
T ss_dssp TTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHT
T ss_pred hhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhC
Confidence 000 00 000000 001233445677777777654
Q ss_pred -CCcEEEEecchhhHHHHHHHHHh-cCCCccccccCCCHHHHHHHHHHHhcCC--CCeEEeehhhhccccCCCccEEEEe
Q psy16310 1077 -PGRTLVFCNSISSVKRLTQLLTM-LKCSPLPLHASMNQRQRLKNLDRFRDQN--NSILLATDVAARGLDIPGIEHVIHY 1152 (1493)
Q Consensus 1077 -~~~~IVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~m~~~~R~~~~~~F~~g~--~~VLVaTdv~~~GiDip~v~~VI~~ 1152 (1493)
++++||||+++..++.++..|.. .|+.+..+||+|++.+|..+++.|++|+ ++|||||+++++|+|+|++++||+|
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~ 581 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMF 581 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEe
Confidence 77999999999999999999995 6999999999999999999999999998 9999999999999999999999999
Q ss_pred cCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCC
Q psy16310 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202 (1493)
Q Consensus 1153 d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~ 1202 (1493)
|+|.++..|+||+||+||.|+.|.+++++...+...-..+++.+..+..+
T Consensus 582 d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~ 631 (968)
T 3dmq_A 582 DLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA 631 (968)
T ss_dssp SCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred cCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCc
Confidence 99999999999999999999999776665443333344555555444443
No 108
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=3.1e-30 Score=330.30 Aligned_cols=345 Identities=17% Similarity=0.165 Sum_probs=182.0
Q ss_pred CChHHHHhhhhhhhc----cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 173 TPTKIQSMVMPSALL----ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~----~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.|+++|.++++.++. +++++++++|||||||++++. ++..+.......
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~--------------------------- 229 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNR--------------------------- 229 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCS---------------------------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhccccc---------------------------
Confidence 699999999986554 356799999999999999654 444443311000
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHH-HHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQ-NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~-~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~ 327 (1493)
.....+.++|||+||++|+.|+. +.+..++ ..+..+.++. ...+.+|+|+||++|...+...
T Consensus 230 -----~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~ 292 (590)
T 3h1t_A 230 -----TGDYRKPRILFLADRNVLVDDPKDKTFTPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRP 292 (590)
T ss_dssp -----SCSSSCCCEEEEEC-----------CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------C
T ss_pred -----ccccCCCeEEEEeCCHHHHHHHHHHHHHhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccc
Confidence 00124567999999999999998 7776553 3333343332 2356799999999998876422
Q ss_pred Cc-cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEE
Q psy16310 328 HF-HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406 (1493)
Q Consensus 328 ~~-~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~ 406 (1493)
.. .......+++|||||||++...+ ...+..++..+. ..++++|
T Consensus 293 ~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~----------------------------------~~~~l~l 337 (590)
T 3h1t_A 293 GLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE----------------------------------PAFQIGM 337 (590)
T ss_dssp CGGGGSCTTSCSEEEESCCC----------CHHHHHHST----------------------------------TSEEEEE
T ss_pred cccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC----------------------------------cceEEEe
Confidence 11 11123468999999999986532 234455555442 2479999
Q ss_pred eeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhc
Q psy16310 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 486 (1493)
Q Consensus 407 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1493)
|||+............+. ......+.+.+.. +....+....+....... . +..
T Consensus 338 TATP~~~~~~~~~~~f~~---------~~~~~~~~~~i~~------------~~l~~~~~~~~~~~~~~~-~---~~~-- 390 (590)
T 3h1t_A 338 TATPLREDNRDTYRYFGN---------PIYTYSLRQGIDD------------GFLAPYRVHRVISEVDAA-G---WRP-- 390 (590)
T ss_dssp ESSCSCTTTHHHHHHSCS---------CSEEECHHHHHHH------------TSSCCEEEEEEEETTCC-----------
T ss_pred ccccccccchhHHHHcCC---------ceEecCHHHHhhC------------CccCCcEEEEeeeeeecc-c---ccc--
Confidence 999874322111000000 0000000000000 000000000000000000 0 000
Q ss_pred CCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhH----HHHHHhh--CCCcEEEEecchhhHHHH
Q psy16310 487 HPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY----LYYFILQ--HPGRTLVFCNSISSVKRL 560 (1493)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----l~~~l~~--~~~~~IIF~~s~~~a~~L 560 (1493)
............ .... ..............+... +..++.. ..+++||||+++..|+.+
T Consensus 391 --~~~~~~~~~~~~----------~~~~---~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l 455 (590)
T 3h1t_A 391 --SKGDVDRFGREI----------PDGE---YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEM 455 (590)
T ss_dssp ---------------------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHH
T ss_pred --cccccccccccc----------cccc---CCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHH
Confidence 000000000000 0000 000000000000111122 2233332 247999999999999999
Q ss_pred HHHHHhcCCC--------ccccccCCCHHHHHHHHHHHhcCCCe---EEEEechhhccCCCCCCcEEEEecCCCChHHHH
Q psy16310 561 TQLLTMLKCS--------PLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 561 ~~~L~~~~~~--------~~~lhg~~~~~~R~~vl~~Fr~g~~~---VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yi 629 (1493)
+..|...+.. +..+||+++. +|..+++.|++|+.. |||||+++++|+|+|+|++||+|++|.|+..|+
T Consensus 456 ~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~ 534 (590)
T 3h1t_A 456 RRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFK 534 (590)
T ss_dssp HHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHH
T ss_pred HHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHH
Confidence 9999776432 5678998764 799999999998876 899999999999999999999999999999999
Q ss_pred HHHhccccCCC
Q psy16310 630 HRSGRTARANN 640 (1493)
Q Consensus 630 QR~GRagR~g~ 640 (1493)
||+||+||.+.
T Consensus 535 Q~iGR~~R~~~ 545 (590)
T 3h1t_A 535 QIVGRGTRLRE 545 (590)
T ss_dssp HHHTTSCCCBG
T ss_pred HHHhhhcccCc
Confidence 99999999875
No 109
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=285.13 Aligned_cols=199 Identities=37% Similarity=0.594 Sum_probs=174.0
Q ss_pred hhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcc
Q psy16310 763 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842 (1493)
Q Consensus 763 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~ 842 (1493)
......+|+++++++.++++|..+||..|+|+|.++|+. +..|+|++++||||||||++|++|+++.+...
T Consensus 38 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-------- 108 (249)
T 3ber_A 38 EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPL-ALQGRDIIGLAETGSGKTGAFALPILNALLET-------- 108 (249)
T ss_dssp HHHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--------
T ss_pred cccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC--------
Confidence 445567899999999999999999999999999999985 55779999999999999999999999887542
Q ss_pred cCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH
Q psy16310 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~ 922 (1493)
..+.++|||+||++|+.|+++.++.++...++++..++||.....+...
T Consensus 109 -------------------------------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (249)
T 3ber_A 109 -------------------------------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 157 (249)
T ss_dssp -------------------------------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH
T ss_pred -------------------------------CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH
Confidence 2345799999999999999999999988888999999999998888888
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
+..+++|+|+||++|.+++..... ..+.++++||+||||++++++|...+..++..+ +..+|+++||||++..
T Consensus 158 ~~~~~~I~v~Tp~~l~~~l~~~~~--~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~-----~~~~~~l~~SAT~~~~ 230 (249)
T 3ber_A 158 LAKKPHIIIATPGRLIDHLENTKG--FNLRALKYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMTKK 230 (249)
T ss_dssp HHTCCSEEEECHHHHHHHHHHSTT--CCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSS-----CSSSEEEEEESSCCHH
T ss_pred hcCCCCEEEECHHHHHHHHHcCCC--cCccccCEEEEcChhhhhccChHHHHHHHHHhC-----CCCCeEEEEeccCCHH
Confidence 888899999999999999876321 236678999999999999999999999998876 3578999999999988
Q ss_pred hHhHHh
Q psy16310 1003 LKNSLN 1008 (1493)
Q Consensus 1003 ~~~~~~ 1008 (1493)
+...+.
T Consensus 231 v~~~~~ 236 (249)
T 3ber_A 231 VQKLQR 236 (249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776553
No 110
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=9e-30 Score=284.48 Aligned_cols=203 Identities=31% Similarity=0.479 Sum_probs=166.3
Q ss_pred hhhhcccccc-CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 763 MFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 763 ~~~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
.+.+..+|.+ +++++.++++|.+.||.+|||+|.++|+. +..|+|++++||||||||++|++|++..+.....
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~----- 87 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPI-ILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI----- 87 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHHHhccc-----
Confidence 3445667888 89999999999999999999999999985 5578999999999999999999999988743210
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~ 921 (1493)
......++++|||+||++||.|+++.++.+. ..++++..++||.....+..
T Consensus 88 ----------------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 138 (228)
T 3iuy_A 88 ----------------------------SREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIE 138 (228)
T ss_dssp ---------------------------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHH
T ss_pred ----------------------------hhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHH
Confidence 0112356789999999999999999999986 56789999999998888877
Q ss_pred HhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 922 ~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
.+..+++|+|+||++|.+++..+.. .+.++++||+||||++++++|...+..++..+ +..+|+++||||+++
T Consensus 139 ~~~~~~~iiv~Tp~~l~~~~~~~~~---~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~-----~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 139 DISKGVDIIIATPGRLNDLQMNNSV---NLRSITYLVIDEADKMLDMEFEPQIRKILLDV-----RPDRQTVMTSATWPD 210 (228)
T ss_dssp HHHSCCSEEEECHHHHHHHHHTTCC---CCTTCCEEEECCHHHHHHTTCHHHHHHHHHHS-----CSSCEEEEEESCCCH
T ss_pred HhcCCCCEEEECHHHHHHHHHcCCc---CcccceEEEEECHHHHhccchHHHHHHHHHhC-----CcCCeEEEEEeeCCH
Confidence 8888899999999999998876553 36678999999999999999999999999887 367899999999998
Q ss_pred chHhHHh
Q psy16310 1002 SLKNSLN 1008 (1493)
Q Consensus 1002 ~~~~~~~ 1008 (1493)
.+...+.
T Consensus 211 ~~~~~~~ 217 (228)
T 3iuy_A 211 TVRQLAL 217 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777653
No 111
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=286.37 Aligned_cols=198 Identities=34% Similarity=0.457 Sum_probs=168.7
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 768 AEWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 768 ~~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
..|++++ +++.++++|..+||..|+|+|.++++.++ .++|++++||||||||++|++|+++.+.....
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~--------- 121 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLL-EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF--------- 121 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHH-HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC---------
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCCchHHHHHHHHHHHHhccc---------
Confidence 3577777 99999999999999999999999999554 67899999999999999999999988754211
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
....+.++|||+||++||.|+++.++.++...++.+..++||.....+...+..
T Consensus 122 --------------------------~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 175 (262)
T 3ly5_A 122 --------------------------MPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN 175 (262)
T ss_dssp --------------------------CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH
T ss_pred --------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC
Confidence 112356799999999999999999999998899999999999998888887777
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+++|+|+|||++.+++..... ..+.++++|||||||+|++++|...+..++..+ +..+|+++||||+++.+..
T Consensus 176 ~~~Iiv~Tp~~l~~~~~~~~~--~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~-----~~~~q~l~~SAT~~~~v~~ 248 (262)
T 3ly5_A 176 GINIIVATPGRLLDHMQNTPG--FMYKNLQCLVIDEADRILDVGFEEELKQIIKLL-----PTRRQTMLFSATQTRKVED 248 (262)
T ss_dssp CCSEEEECHHHHHHHHHHCTT--CCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS-----CSSSEEEEECSSCCHHHHH
T ss_pred CCCEEEEcHHHHHHHHHccCC--cccccCCEEEEcChHHHhhhhHHHHHHHHHHhC-----CCCCeEEEEEecCCHHHHH
Confidence 899999999999998876532 236688999999999999999999999999887 3568999999999988877
Q ss_pred HHh
Q psy16310 1006 SLN 1008 (1493)
Q Consensus 1006 ~~~ 1008 (1493)
...
T Consensus 249 ~~~ 251 (262)
T 3ly5_A 249 LAR 251 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 112
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=6.2e-29 Score=273.09 Aligned_cols=193 Identities=27% Similarity=0.540 Sum_probs=169.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++++|++.++++|.+.||..|+|+|.++++. +..++|+++++|||||||++|++|++..+..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------------- 67 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI-ALSGRDILARAKNGTGKSGAYLIPLLERLDL-------------- 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHH-HHTTCCEEEECCSSSTTHHHHHHHHHHHCCT--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HccCCCEEEECCCCCchHHHHHHHHHHHhcc--------------
Confidence 3699999999999999999999999999999985 5577999999999999999999999987632
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...+.++||++||++|+.|+++.++.++... ++.+..++||.....+...+..+
T Consensus 68 -------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 122 (206)
T 1vec_A 68 -------------------------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122 (206)
T ss_dssp -------------------------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSC
T ss_pred -------------------------cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCC
Confidence 1344679999999999999999999998777 78999999999988888888888
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+||++|.+.+..+.. .+.++++||+||||++.+.+|...+..++..+ +...|+++||||++..+...
T Consensus 123 ~~i~v~T~~~l~~~~~~~~~---~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~-----~~~~~~l~~SAT~~~~~~~~ 194 (206)
T 1vec_A 123 VHVVIATPGRILDLIKKGVA---KVDHVQMIVLDEADKLLSQDFVQIMEDIILTL-----PKNRQILLYSATFPLSVQKF 194 (206)
T ss_dssp CSEEEECHHHHHHHHHTTCS---CCTTCCEEEEETHHHHTSTTTHHHHHHHHHHS-----CTTCEEEEEESCCCHHHHHH
T ss_pred CCEEEeCHHHHHHHHHcCCc---CcccCCEEEEEChHHhHhhCcHHHHHHHHHhC-----CccceEEEEEeeCCHHHHHH
Confidence 99999999999999986553 35678999999999999999999999998877 35789999999999887766
Q ss_pred Hh
Q psy16310 1007 LN 1008 (1493)
Q Consensus 1007 ~~ 1008 (1493)
+.
T Consensus 195 ~~ 196 (206)
T 1vec_A 195 MN 196 (206)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 113
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.96 E-value=2.3e-29 Score=279.12 Aligned_cols=193 Identities=36% Similarity=0.609 Sum_probs=167.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|+++++++.++++|.+.||..|+|+|.++++. +..++|++++||||||||++|++|++..+..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------------- 68 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPG-ALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-------------- 68 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHHTCCEEEECCSSHHHHHHHHHHHHHHCCT--------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHHHh--------------
Confidence 5699999999999999999999999999999985 4577899999999999999999999987632
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC----CcEEEEEEcCCCHHHHHHHh
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT----PVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~----~~~v~~~~gg~~~~~~~~~l 923 (1493)
...+.++|||+||++|+.|+++.++.++... ++.+..++||.....+...+
T Consensus 69 -------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 123 (219)
T 1q0u_A 69 -------------------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 123 (219)
T ss_dssp -------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC
T ss_pred -------------------------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHc
Confidence 1234679999999999999999999998776 68899999998776665555
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|+||++|.+++..+.. .+.++++||+||||++.+++|...+..++..+ +...|+++||||++..+
T Consensus 124 ~~~~~Iiv~Tp~~l~~~l~~~~~---~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~-----~~~~~~l~~SAT~~~~~ 195 (219)
T 1q0u_A 124 NVQPHIVIGTPGRINDFIREQAL---DVHTAHILVVDEADLMLDMGFITDVDQIAARM-----PKDLQMLVFSATIPEKL 195 (219)
T ss_dssp SSCCSEEEECHHHHHHHHHTTCC---CGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS-----CTTCEEEEEESCCCGGG
T ss_pred CCCCCEEEeCHHHHHHHHHcCCC---CcCcceEEEEcCchHHhhhChHHHHHHHHHhC-----CcccEEEEEecCCCHHH
Confidence 66789999999999999987553 35678999999999999999999999998877 35789999999999887
Q ss_pred HhHHh
Q psy16310 1004 KNSLN 1008 (1493)
Q Consensus 1004 ~~~~~ 1008 (1493)
...+.
T Consensus 196 ~~~~~ 200 (219)
T 1q0u_A 196 KPFLK 200 (219)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 114
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=279.80 Aligned_cols=202 Identities=31% Similarity=0.482 Sum_probs=164.9
Q ss_pred ccccccccc-cCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCcc
Q psy16310 147 FVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225 (1493)
Q Consensus 147 ~~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~ 225 (1493)
+.+..+|.+ +++++.++++|.+.||..|+++|.++++ .+..|+|++++||||||||++|++|++.++......
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~----- 88 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWP-IILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS----- 88 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHHC----------
T ss_pred CCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch-----
Confidence 345567888 8999999999999999999999999998 556789999999999999999999999887532110
Q ss_pred CCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH
Q psy16310 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 305 (1493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~ 305 (1493)
.....++++||++||++||.|+++.+..+. ..++++..++|+.....+...
T Consensus 89 ----------------------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 139 (228)
T 3iuy_A 89 ----------------------------REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIED 139 (228)
T ss_dssp --------------------------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHH
T ss_pred ----------------------------hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHH
Confidence 112356789999999999999999999986 458899999999988888888
Q ss_pred hcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 306 l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
+..+++|+|+||++|.+++...... +.++++|||||||++++++|...+..++..+
T Consensus 140 ~~~~~~iiv~Tp~~l~~~~~~~~~~---~~~~~~lViDEah~~~~~~~~~~~~~i~~~~--------------------- 195 (228)
T 3iuy_A 140 ISKGVDIIIATPGRLNDLQMNNSVN---LRSITYLVIDEADKMLDMEFEPQIRKILLDV--------------------- 195 (228)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTCCC---CTTCCEEEECCHHHHHHTTCHHHHHHHHHHS---------------------
T ss_pred hcCCCCEEEECHHHHHHHHHcCCcC---cccceEEEEECHHHHhccchHHHHHHHHHhC---------------------
Confidence 8888999999999999988766543 5578999999999999999999999998776
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+..+|+++||||+|+.+..++.
T Consensus 196 ------------~~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 196 ------------RPDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp ------------CSSCEEEEEESCCCHHHHHHHH
T ss_pred ------------CcCCeEEEEEeeCCHHHHHHHH
Confidence 3347999999999998877664
No 115
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.96 E-value=7.5e-29 Score=277.09 Aligned_cols=194 Identities=27% Similarity=0.440 Sum_probs=166.2
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
.+...|+++++++.++++|.+.||..|+|+|.++++. +..|+|+++++|||||||++|++|++..+...
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---------- 89 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPL-GRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE---------- 89 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT----------
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc----------
Confidence 4456799999999999999999999999999999995 55789999999999999999999999876421
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHh
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l 923 (1493)
..+.++|||+||++|+.|+++.++.++... ++++..++||.....+...+
T Consensus 90 -----------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 140 (230)
T 2oxc_A 90 -----------------------------NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL 140 (230)
T ss_dssp -----------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT
T ss_pred -----------------------------CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc
Confidence 234679999999999999999999998765 79999999999887776655
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCC-ChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~-~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
. +++|+|+||++|.+++..+.. .+.++++||+||||++++++ |...+..++..++ ...|+++||||++..
T Consensus 141 ~-~~~Iiv~Tp~~l~~~~~~~~~---~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~-----~~~~~l~lSAT~~~~ 211 (230)
T 2oxc_A 141 K-KCHIAVGSPGRIKQLIELDYL---NPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP-----ASKQMLAVSATYPEF 211 (230)
T ss_dssp T-SCSEEEECHHHHHHHHHTTSS---CGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC-----SSCEEEEEESCCCHH
T ss_pred c-CCCEEEECHHHHHHHHhcCCc---ccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC-----CCCeEEEEEeccCHH
Confidence 4 689999999999999986653 35678999999999999997 8899999988873 578999999999987
Q ss_pred hHhHH
Q psy16310 1003 LKNSL 1007 (1493)
Q Consensus 1003 ~~~~~ 1007 (1493)
+...+
T Consensus 212 ~~~~~ 216 (230)
T 2oxc_A 212 LANAL 216 (230)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
No 116
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.96 E-value=7.3e-29 Score=280.01 Aligned_cols=198 Identities=37% Similarity=0.607 Sum_probs=171.6
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
....+|+++++++.++++|..+||..|+++|.++++ .+..++|++++||||||||++|++|+++.+...
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~---------- 108 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIP-LALQGRDIIGLAETGSGKTGAFALPILNALLET---------- 108 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHH-HHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC----------
Confidence 345679999999999999999999999999999998 556789999999999999999999999887541
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
..++++|||+||++|+.|+++.+..++...++++..++|+.....+...+.
T Consensus 109 -----------------------------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 159 (249)
T 3ber_A 109 -----------------------------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 159 (249)
T ss_dssp -----------------------------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH
T ss_pred -----------------------------CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc
Confidence 234679999999999999999999998888899999999999888888888
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.+++|+|+||++|.+++..... ..+.++++|||||||++++++|...+..++..+
T Consensus 160 ~~~~I~v~Tp~~l~~~l~~~~~--~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~----------------------- 214 (249)
T 3ber_A 160 KKPHIIIATPGRLIDHLENTKG--FNLRALKYLVMDEADRILNMDFETEVDKILKVI----------------------- 214 (249)
T ss_dssp TCCSEEEECHHHHHHHHHHSTT--CCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSS-----------------------
T ss_pred CCCCEEEECHHHHHHHHHcCCC--cCccccCEEEEcChhhhhccChHHHHHHHHHhC-----------------------
Confidence 8899999999999999875321 125578999999999999999999999988765
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||++..+..+.+.
T Consensus 215 ----------~~~~~~l~~SAT~~~~v~~~~~~ 237 (249)
T 3ber_A 215 ----------PRDRKTFLFSATMTKKVQKLQRA 237 (249)
T ss_dssp ----------CSSSEEEEEESSCCHHHHHHHHH
T ss_pred ----------CCCCeEEEEeccCCHHHHHHHHH
Confidence 33479999999999988776643
No 117
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.96 E-value=3.8e-29 Score=280.78 Aligned_cols=196 Identities=30% Similarity=0.529 Sum_probs=160.6
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
..+.+|+++++++.++++|...||..|+|+|.++|+.+ ..++|++++||||||||++|++|+++.+..
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i-~~~~~~li~apTGsGKT~~~~l~~l~~l~~----------- 94 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPC-IKGYDVIAQAQSGTGKTATFAISILQQLEI----------- 94 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HTTCCEEECCCSSHHHHHHHHHHHHHHCCT-----------
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCcHHHHHHHHHHHHHHh-----------
Confidence 34567999999999999999999999999999999954 477899999999999999999999987632
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 924 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 924 (1493)
...+.++|||+||++|+.|+++.++.++...++.+..++||.....+...+.
T Consensus 95 ----------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 146 (237)
T 3bor_A 95 ----------------------------EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQ 146 (237)
T ss_dssp ----------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC------------
T ss_pred ----------------------------cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHh
Confidence 1234579999999999999999999999888899999999988777766665
Q ss_pred CC-CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 925 KC-PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 925 ~~-~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
.+ ++|+|+||++|.+++..+.. .+.++++|||||||++++++|...+..++..+ +...|+++||||++..+
T Consensus 147 ~~~~~Ilv~Tp~~l~~~l~~~~~---~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~-----~~~~~~i~~SAT~~~~~ 218 (237)
T 3bor_A 147 AEAPHIVVGTPGRVFDMLNRRYL---SPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL-----NTSIQVVLLSATMPTDV 218 (237)
T ss_dssp -CCCSEEEECHHHHHHHHHTTSS---CSTTCCEEEEESHHHHHHTTCHHHHHHHHHHS-----CTTCEEEEECSSCCHHH
T ss_pred cCCCCEEEECHHHHHHHHHhCCc---CcccCcEEEECCchHhhccCcHHHHHHHHHhC-----CCCCeEEEEEEecCHHH
Confidence 54 89999999999999987654 35578999999999999999999999998877 36789999999999887
Q ss_pred HhHHh
Q psy16310 1004 KNSLN 1008 (1493)
Q Consensus 1004 ~~~~~ 1008 (1493)
...+.
T Consensus 219 ~~~~~ 223 (237)
T 3bor_A 219 LEVTK 223 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 118
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=276.72 Aligned_cols=199 Identities=31% Similarity=0.493 Sum_probs=167.9
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
..+.+|+++++++.++++|...||..|+|+|.++++. +..|+|+++++|||||||++|++|+++.+.....
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-------- 92 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGL-ALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-------- 92 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--------
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--------
Confidence 3456799999999999999999999999999999985 5578999999999999999999999988754210
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 924 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 924 (1493)
....+.++||++||++|+.|+++.++.++...++++..++||.....+...+
T Consensus 93 ---------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 144 (236)
T 2pl3_A 93 ---------------------------TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI- 144 (236)
T ss_dssp ---------------------------CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-
T ss_pred ---------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-
Confidence 1124567999999999999999999999988889999999998776665555
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.+++|+|+||++|.+++..... ..+.++++||+||||++++++|...+..++..+ +..+|+++||||+++.+.
T Consensus 145 ~~~~iiv~Tp~~l~~~l~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~-----~~~~~~l~~SAT~~~~~~ 217 (236)
T 2pl3_A 145 NNINILVCTPGRLLQHMDETVS--FHATDLQMLVLDEADRILDMGFADTMNAVIENL-----PKKRQTLLFSATQTKSVK 217 (236)
T ss_dssp TTCSEEEECHHHHHHHHHHCSS--CCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTS-----CTTSEEEEEESSCCHHHH
T ss_pred CCCCEEEECHHHHHHHHHhcCC--cccccccEEEEeChHHHhcCCcHHHHHHHHHhC-----CCCCeEEEEEeeCCHHHH
Confidence 4689999999999998876431 235678999999999999999999999998877 357899999999998876
Q ss_pred hHH
Q psy16310 1005 NSL 1007 (1493)
Q Consensus 1005 ~~~ 1007 (1493)
...
T Consensus 218 ~~~ 220 (236)
T 2pl3_A 218 DLA 220 (236)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 119
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.96 E-value=2.8e-29 Score=285.23 Aligned_cols=208 Identities=36% Similarity=0.554 Sum_probs=174.1
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 766 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
.+.+|+++++++.++++|...||..|+|+|.++|+. +..++|++++||||||||++|++|+++.+........
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~------ 93 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPA-ILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ------ 93 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC---------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccc------
Confidence 456799999999999999999999999999999995 5577899999999999999999999998864321000
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
......++++|||+||++|+.|+++.++.++...++.+..++||.....+...+..
T Consensus 94 ------------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 149 (253)
T 1wrb_A 94 ------------------------RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQM 149 (253)
T ss_dssp ---------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSS
T ss_pred ------------------------cccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCC
Confidence 00123446899999999999999999999998888999999999998888888888
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+++|+|+||++|.+++..+.. .+.++++||+||||+|++++|...+..++..+... ....+|+++||||+++.+..
T Consensus 150 ~~~Ivv~Tp~~l~~~l~~~~~---~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~-~~~~~q~l~~SAT~~~~~~~ 225 (253)
T 1wrb_A 150 GCHLLVATPGRLVDFIEKNKI---SLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMP-SGINRQTLMFSATFPKEIQK 225 (253)
T ss_dssp CCSEEEECHHHHHHHHHTTSB---CCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCC-CGGGCEEEEEESSCCHHHHH
T ss_pred CCCEEEECHHHHHHHHHcCCC---ChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCC-CCCCcEEEEEEEeCCHHHHH
Confidence 899999999999999987653 35678999999999999999999999999865321 11268999999999988776
Q ss_pred HHh
Q psy16310 1006 SLN 1008 (1493)
Q Consensus 1006 ~~~ 1008 (1493)
.+.
T Consensus 226 ~~~ 228 (253)
T 1wrb_A 226 LAA 228 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 120
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.7e-28 Score=269.71 Aligned_cols=193 Identities=27% Similarity=0.541 Sum_probs=168.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|+++++++.+++.|.+.||..|+|+|.++++ .+..++|+++++|||||||++|++|+++++..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------------- 67 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP-IALSGRDILARAKNGTGKSGAYLIPLLERLDL-------------- 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHH-HHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHccCCCEEEECCCCCchHHHHHHHHHHHhcc--------------
Confidence 469999999999999999999999999999998 55678999999999999999999999976632
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
...++++||++||++|+.|+++.+..+.... ++.+..++|+.....+...+..+
T Consensus 68 -------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 122 (206)
T 1vec_A 68 -------------------------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122 (206)
T ss_dssp -------------------------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSC
T ss_pred -------------------------cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCC
Confidence 1234679999999999999999999998776 78999999999988888888888
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|.+.+..+... +.++++|||||||++++.+|...+..++..+
T Consensus 123 ~~i~v~T~~~l~~~~~~~~~~---~~~~~~lViDEah~~~~~~~~~~l~~i~~~~------------------------- 174 (206)
T 1vec_A 123 VHVVIATPGRILDLIKKGVAK---VDHVQMIVLDEADKLLSQDFVQIMEDIILTL------------------------- 174 (206)
T ss_dssp CSEEEECHHHHHHHHHTTCSC---CTTCCEEEEETHHHHTSTTTHHHHHHHHHHS-------------------------
T ss_pred CCEEEeCHHHHHHHHHcCCcC---cccCCEEEEEChHHhHhhCcHHHHHHHHHhC-------------------------
Confidence 999999999999999866543 5578999999999999999999998888766
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+...|+++||||++..+..++.
T Consensus 175 --------~~~~~~l~~SAT~~~~~~~~~~ 196 (206)
T 1vec_A 175 --------PKNRQILLYSATFPLSVQKFMN 196 (206)
T ss_dssp --------CTTCEEEEEESCCCHHHHHHHH
T ss_pred --------CccceEEEEEeeCCHHHHHHHH
Confidence 2347999999999988776654
No 121
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=281.17 Aligned_cols=198 Identities=35% Similarity=0.470 Sum_probs=167.9
Q ss_pred cccccC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 152 EWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 152 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
.|.+++ +++.++++|..+||..|+++|.++++. +..++|++++||||||||++|++|+++.+.....
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~---------- 121 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRP-LLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF---------- 121 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHH-HHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC----------
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc----------
Confidence 466666 999999999999999999999999985 5567999999999999999999999988864211
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
....+.++|||+||++||.|+++.+..++...++.+..++|+.....+...+..+
T Consensus 122 -------------------------~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 176 (262)
T 3ly5_A 122 -------------------------MPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNG 176 (262)
T ss_dssp -------------------------CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHC
T ss_pred -------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCC
Confidence 1123567999999999999999999999988899999999999998888888888
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|.+++..... ..+.++++|||||||++++++|...+..++..+
T Consensus 177 ~~Iiv~Tp~~l~~~~~~~~~--~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~------------------------- 229 (262)
T 3ly5_A 177 INIIVATPGRLLDHMQNTPG--FMYKNLQCLVIDEADRILDVGFEEELKQIIKLL------------------------- 229 (262)
T ss_dssp CSEEEECHHHHHHHHHHCTT--CCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS-------------------------
T ss_pred CCEEEEcHHHHHHHHHccCC--cccccCCEEEEcChHHHhhhhHHHHHHHHHHhC-------------------------
Confidence 99999999999998876431 135588999999999999999999999998876
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||+++.+..+.+.
T Consensus 230 --------~~~~q~l~~SAT~~~~v~~~~~~ 252 (262)
T 3ly5_A 230 --------PTRRQTMLFSATQTRKVEDLARI 252 (262)
T ss_dssp --------CSSSEEEEECSSCCHHHHHHHHH
T ss_pred --------CCCCeEEEEEecCCHHHHHHHHH
Confidence 33479999999999988877653
No 122
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.96 E-value=6.5e-29 Score=275.51 Aligned_cols=194 Identities=36% Similarity=0.598 Sum_probs=166.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|+++++++.+++++.+.||..|+++|.++++ .+..++|+++++|||||||++|++|+++.+..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------------- 68 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-------------- 68 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT--------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHHHh--------------
Confidence 468999999999999999999999999999998 55578999999999999999999999977632
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC----CeEEEEEEcCCCHHHHHHHh
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT----PVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~----~i~v~~~~G~~~~~~~~~~l 306 (1493)
...++++||++||++|+.|+++.+..+.... ++.+..++|+.........+
T Consensus 69 -------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 123 (219)
T 1q0u_A 69 -------------------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 123 (219)
T ss_dssp -------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC
T ss_pred -------------------------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHc
Confidence 1234679999999999999999999988766 68899999998777666666
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
..+++|+|+||++|.+++..+... +.++++|||||||+++++++...+..++..+
T Consensus 124 ~~~~~Iiv~Tp~~l~~~l~~~~~~---~~~~~~lViDEah~~~~~~~~~~l~~i~~~~---------------------- 178 (219)
T 1q0u_A 124 NVQPHIVIGTPGRINDFIREQALD---VHTAHILVVDEADLMLDMGFITDVDQIAARM---------------------- 178 (219)
T ss_dssp SSCCSEEEECHHHHHHHHHTTCCC---GGGCCEEEECSHHHHHHTTCHHHHHHHHHTS----------------------
T ss_pred CCCCCEEEeCHHHHHHHHHcCCCC---cCcceEEEEcCchHHhhhChHHHHHHHHHhC----------------------
Confidence 668899999999999999875543 4578999999999999999999998888765
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+...|+++||||+++.+..++..
T Consensus 179 -----------~~~~~~l~~SAT~~~~~~~~~~~ 201 (219)
T 1q0u_A 179 -----------PKDLQMLVFSATIPEKLKPFLKK 201 (219)
T ss_dssp -----------CTTCEEEEEESCCCGGGHHHHHH
T ss_pred -----------CcccEEEEEecCCCHHHHHHHHH
Confidence 23479999999999888776653
No 123
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.96 E-value=2.4e-28 Score=272.94 Aligned_cols=195 Identities=28% Similarity=0.443 Sum_probs=165.0
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
....+|+++++++.+.+.|.+.||..|+++|.++++ .+..++|+++++|||||||++|++|+++.+..
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~----------- 88 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIP-LGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL----------- 88 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-----------
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-----------
Confidence 344679999999999999999999999999999998 56678999999999999999999999977632
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHh
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l 306 (1493)
...+.++|||+||++|+.|+++.+..++... ++++..++|+.....+...+
T Consensus 89 ----------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 140 (230)
T 2oxc_A 89 ----------------------------ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL 140 (230)
T ss_dssp ----------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT
T ss_pred ----------------------------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc
Confidence 1234679999999999999999999988665 79999999999887766655
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcC-ChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~-~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
.+++|+|+||++|.+++..+... +.++++|||||||++++++ |...+..++..+
T Consensus 141 -~~~~Iiv~Tp~~l~~~~~~~~~~---~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~--------------------- 195 (230)
T 2oxc_A 141 -KKCHIAVGSPGRIKQLIELDYLN---PGSIRLFILDEADKLLEEGSFQEQINWIYSSL--------------------- 195 (230)
T ss_dssp -TSCSEEEECHHHHHHHHHTTSSC---GGGCCEEEESSHHHHHSTTSSHHHHHHHHHHS---------------------
T ss_pred -cCCCEEEECHHHHHHHHhcCCcc---cccCCEEEeCCchHhhcCcchHHHHHHHHHhC---------------------
Confidence 46899999999999998866543 4578999999999999987 899998888766
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+...|+++||||+++.+..++.
T Consensus 196 ------------~~~~~~l~lSAT~~~~~~~~~~ 217 (230)
T 2oxc_A 196 ------------PASKQMLAVSATYPEFLANALT 217 (230)
T ss_dssp ------------CSSCEEEEEESCCCHHHHHHHT
T ss_pred ------------CCCCeEEEEEeccCHHHHHHHH
Confidence 2347999999999988766553
No 124
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.96 E-value=1.2e-28 Score=276.71 Aligned_cols=195 Identities=30% Similarity=0.531 Sum_probs=158.9
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
...+|+++++++.++++|...||..|+++|.++++ .+..++|++++||||||||++|++|+++.+..
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~-~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------------ 94 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII-PCIKGYDVIAQAQSGTGKTATFAISILQQLEI------------ 94 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------------
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------------
Confidence 35679999999999999999999999999999998 45578999999999999999999999977632
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
...+.++|||+||++|+.|+++.+..++...++.+..++|+.....+...+..
T Consensus 95 ---------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 147 (237)
T 3bor_A 95 ---------------------------EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 147 (237)
T ss_dssp ---------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------
T ss_pred ---------------------------cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhc
Confidence 12346799999999999999999999998888999999999887777666655
Q ss_pred C-CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 309 C-PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 309 ~-~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
+ ++|+|+||++|.+++..+... +.++++|||||||++++++|...+..++..+
T Consensus 148 ~~~~Ilv~Tp~~l~~~l~~~~~~---~~~~~~lViDEah~~~~~~~~~~l~~i~~~~----------------------- 201 (237)
T 3bor_A 148 EAPHIVVGTPGRVFDMLNRRYLS---PKWIKMFVLDEADEMLSRGFKDQIYEIFQKL----------------------- 201 (237)
T ss_dssp CCCSEEEECHHHHHHHHHTTSSC---STTCCEEEEESHHHHHHTTCHHHHHHHHHHS-----------------------
T ss_pred CCCCEEEECHHHHHHHHHhCCcC---cccCcEEEECCchHhhccCcHHHHHHHHHhC-----------------------
Confidence 5 899999999999999876543 4578999999999999999999998888765
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+..+|+++||||+++.+..++.
T Consensus 202 ----------~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 202 ----------NTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp ----------CTTCEEEEECSSCCHHHHHHHH
T ss_pred ----------CCCCeEEEEEEecCHHHHHHHH
Confidence 3347999999999988877664
No 125
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.96 E-value=3.3e-28 Score=294.97 Aligned_cols=130 Identities=20% Similarity=0.196 Sum_probs=112.7
Q ss_pred ccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEE
Q psy16310 524 KILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600 (1493)
Q Consensus 524 ~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVa 600 (1493)
.+......|...+...+.. .+.++||||+|+..++.|+..|...|+.+..+||++.+.++..+...|+.| .|+||
T Consensus 451 ~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVA 528 (822)
T 3jux_A 451 LVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIA 528 (822)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEE
T ss_pred EEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEE
Confidence 3555666788888887765 367999999999999999999999999999999996666666566666666 69999
Q ss_pred echhhccCCCC--------CCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 601 TDVAARGLDIP--------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 601 Tdv~~rGlDip--------~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
||+|+||+||+ +..+||+|++|.+...|+||+|||||+|.+|.+++|++.+|...
T Consensus 529 TdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 529 TNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp ETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred cchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 99999999998 66799999999999999999999999999999999999988444
No 126
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.96 E-value=9.5e-29 Score=280.84 Aligned_cols=209 Identities=36% Similarity=0.545 Sum_probs=174.5
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
.+.+|.++++++.++++|...||..|+++|.++++ .+..++|++++||||||||++|++|+++++........
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~------ 93 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ------ 93 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC---------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccc------
Confidence 45679999999999999999999999999999998 55678999999999999999999999998864221100
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
......++++|||+||++||.|+++.+..++...++.+..++|+.....+...+..
T Consensus 94 ------------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 149 (253)
T 1wrb_A 94 ------------------------RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQM 149 (253)
T ss_dssp ---------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSS
T ss_pred ------------------------cccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCC
Confidence 00123346899999999999999999999988888999999999998888888888
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+++|+|+||++|.+++...... +.++++|||||||++++++|...+..++..+....
T Consensus 150 ~~~Ivv~Tp~~l~~~l~~~~~~---~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~-------------------- 206 (253)
T 1wrb_A 150 GCHLLVATPGRLVDFIEKNKIS---LEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS-------------------- 206 (253)
T ss_dssp CCSEEEECHHHHHHHHHTTSBC---CTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC--------------------
T ss_pred CCCEEEECHHHHHHHHHcCCCC---hhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC--------------------
Confidence 8999999999999999876543 55789999999999999999999999987543210
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
...+|+++||||+++.+..+...
T Consensus 207 ---------~~~~q~l~~SAT~~~~~~~~~~~ 229 (253)
T 1wrb_A 207 ---------GINRQTLMFSATFPKEIQKLAAD 229 (253)
T ss_dssp ---------GGGCEEEEEESSCCHHHHHHHHH
T ss_pred ---------CCCcEEEEEEEeCCHHHHHHHHH
Confidence 12479999999999988776653
No 127
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=1.2e-28 Score=328.12 Aligned_cols=123 Identities=18% Similarity=0.359 Sum_probs=113.2
Q ss_pred ccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHh-cCCCccccccCCCHHHHHHHHHHHhcCC--CeEEEEe
Q psy16310 526 LCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTM-LKCSPLPLHASMNQRQRLKNLDRFRDQN--NSILLAT 601 (1493)
Q Consensus 526 ~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~-~~~~~~~lhg~~~~~~R~~vl~~Fr~g~--~~VLVaT 601 (1493)
.+..+.|...+..++... ++++||||+++..+..++..|.. .|+.+..+||+|++.+|..+++.|++|+ ++|||||
T Consensus 484 ~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 484 WWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp TTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred ccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 345567888888888764 67999999999999999999994 6999999999999999999999999998 9999999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEe
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~ 648 (1493)
+++++|+|+|+|++||+||+|.++..|+||+||+||.|..|.|++++
T Consensus 564 ~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 564 EIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp CCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred chhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999766664
No 128
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.96 E-value=2.4e-28 Score=272.25 Aligned_cols=194 Identities=29% Similarity=0.495 Sum_probs=161.3
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 766 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
.+.+|+++++++.+++.|...||..|+|+|.++++. +..++|+++++|||||||++|++|+++.+..
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------------ 78 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP-IIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------ 78 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------------
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------------
Confidence 356799999999999999999999999999999985 4577899999999999999999999987632
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
...+.++||++||++|+.|+++.+..++...++++..++||.....+...+..
T Consensus 79 ---------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 131 (224)
T 1qde_A 79 ---------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD 131 (224)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT
T ss_pred ---------------------------cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC
Confidence 13456799999999999999999999988889999999999877766655554
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
++|+|+||++|.+.+..+.. .+.++++||+||||++.+++|...+..++..+ +...|+++||||+++.+..
T Consensus 132 -~~iiv~Tp~~l~~~~~~~~~---~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~-----~~~~~~i~lSAT~~~~~~~ 202 (224)
T 1qde_A 132 -AQIVVGTPGRVFDNIQRRRF---RTDKIKMFILDEADEMLSSGFKEQIYQIFTLL-----PPTTQVVLLSATMPNDVLE 202 (224)
T ss_dssp -CSEEEECHHHHHHHHHTTSS---CCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS-----CTTCEEEEEESSCCHHHHH
T ss_pred -CCEEEECHHHHHHHHHhCCc---chhhCcEEEEcChhHHhhhhhHHHHHHHHHhC-----CccCeEEEEEeecCHHHHH
Confidence 89999999999999887543 35678999999999999999999999998876 3678999999999988776
Q ss_pred HHh
Q psy16310 1006 SLN 1008 (1493)
Q Consensus 1006 ~~~ 1008 (1493)
.+.
T Consensus 203 ~~~ 205 (224)
T 1qde_A 203 VTT 205 (224)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 129
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.96 E-value=6.4e-28 Score=270.99 Aligned_cols=200 Identities=31% Similarity=0.503 Sum_probs=167.2
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
...+|+++++++.+++.|...||..|+++|.++++ .+..++|+++++|||||||++|++|+++.+.....
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~-~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--------- 92 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIG-LALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--------- 92 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC---------
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc---------
Confidence 45679999999999999999999999999999998 55678999999999999999999999988864210
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
....++++||++||++||.|+++.+..++...++.+..++|+.....+...+ .
T Consensus 93 --------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~ 145 (236)
T 2pl3_A 93 --------------------------TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-N 145 (236)
T ss_dssp --------------------------CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-T
T ss_pred --------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-C
Confidence 1123567999999999999999999999988889999999998876665555 4
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+++|+|+||++|.+++..... ..+.++++|||||||++++++|...+..++..+
T Consensus 146 ~~~iiv~Tp~~l~~~l~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~------------------------ 199 (236)
T 2pl3_A 146 NINILVCTPGRLLQHMDETVS--FHATDLQMLVLDEADRILDMGFADTMNAVIENL------------------------ 199 (236)
T ss_dssp TCSEEEECHHHHHHHHHHCSS--CCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTS------------------------
T ss_pred CCCEEEECHHHHHHHHHhcCC--cccccccEEEEeChHHHhcCCcHHHHHHHHHhC------------------------
Confidence 689999999999998875421 124578999999999999999999999888765
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||+++.+..+.+.
T Consensus 200 ---------~~~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 200 ---------PKKRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp ---------CTTSEEEEEESSCCHHHHHHHHH
T ss_pred ---------CCCCeEEEEEeeCCHHHHHHHHH
Confidence 33479999999999888776543
No 130
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.96 E-value=4.3e-28 Score=266.65 Aligned_cols=192 Identities=38% Similarity=0.580 Sum_probs=165.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
+|+++++++.+++.|.+.||..|+|+|.++++. +..++|+++++|||||||++|++|++..+....
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~------------- 67 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPL-ALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ------------- 67 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-------------
Confidence 589999999999999999999999999999985 557789999999999999999999998774311
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
....++++||++||++|+.|+++.+..++.. +++..++||.....+...+..+++
T Consensus 68 -----------------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 122 (207)
T 2gxq_A 68 -----------------------ERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGAD 122 (207)
T ss_dssp -----------------------CTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCS
T ss_pred -----------------------ccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCC
Confidence 1234568999999999999999999998654 778889999887777777777889
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
|+|+||+++.+++..+.. .+.++++||+||||++.+++|...+..++..+ +...|+++||||+++.+...+
T Consensus 123 i~v~T~~~l~~~~~~~~~---~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~~ 193 (207)
T 2gxq_A 123 AVVATPGRALDYLRQGVL---DLSRVEVAVLDEADEMLSMGFEEEVEALLSAT-----PPSRQTLLFSATLPSWAKRLA 193 (207)
T ss_dssp EEEECHHHHHHHHHHTSS---CCTTCSEEEEESHHHHHHTTCHHHHHHHHHTS-----CTTSEEEEECSSCCHHHHHHH
T ss_pred EEEECHHHHHHHHHcCCc---chhhceEEEEEChhHhhccchHHHHHHHHHhC-----CccCeEEEEEEecCHHHHHHH
Confidence 999999999999987553 35678999999999999999999999988776 357899999999998776655
No 131
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=8.2e-28 Score=315.94 Aligned_cols=329 Identities=15% Similarity=0.102 Sum_probs=211.4
Q ss_pred CCCcHHHHhhHHHhhc-------------cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHH
Q psy16310 789 KTPTKIQSMVMPSALL-------------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 855 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~-------------~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1493)
..|+|+|..|++.++. .+++.+++++||||||+++ ++++..+..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~---------------------- 326 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE---------------------- 326 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT----------------------
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh----------------------
Confidence 3699999999997664 1468999999999999997 666644311
Q ss_pred HHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc-CCCcEEEECc
Q psy16310 856 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATP 934 (1493)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP 934 (1493)
.....++||||||++|+.|+.+.+..++.. .+.|+.+.......+. ..++|+|+||
T Consensus 327 -----------------~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTi 383 (1038)
T 2w00_A 327 -----------------LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTI 383 (1038)
T ss_dssp -----------------CTTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEH
T ss_pred -----------------cCCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEH
Confidence 122358999999999999999999887643 2345555555555553 5689999999
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH----hHHhhh
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK----NSLNLK 1010 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~----~~~~~~ 1010 (1493)
++|..++..... ...+....+||+||||++... .....|...+ ++.++++||||+..... ......
T Consensus 384 qkl~~~l~~~~~-~~~~~~~~lvIiDEAHrs~~~---~~~~~I~~~~------p~a~~lgfTATP~~~~~~~~~~~t~~~ 453 (1038)
T 2w00_A 384 QKLNNLMKAESD-LPVYNQQVVFIFDECHRSQFG---EAQKNLKKKF------KRYYQFGFTGTPIFPENALGSETTASV 453 (1038)
T ss_dssp HHHHHHHHHCCC-CGGGGSCEEEEEESCCTTHHH---HHHHHHHHHC------SSEEEEEEESSCCCSTTCTTSCCHHHH
T ss_pred HHHHHHHhcccc-hhccccccEEEEEccchhcch---HHHHHHHHhC------CcccEEEEeCCccccccchhhhHHHHH
Confidence 999998865421 123456789999999997642 2345566665 45899999999975321 000000
Q ss_pred ccCcCcccccCCCchhHHHHhHhccCCCcEEeccc---cc---------cccccceeeEEEecccchhhHHHHHH-H---
Q psy16310 1011 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE---KI---------GITKTLTESKILCKHDEKDSYLYYFI-L--- 1074 (1493)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~k~~~l~~~l-~--- 1074 (1493)
.+... .. -.+......-.+. +..+.... .. .....+...... ....+...+...+ .
T Consensus 454 FG~~i----~~--Y~l~~AI~dg~l~-p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l-~~~~ri~~I~~~Il~~~~ 525 (1038)
T 2w00_A 454 FGREL----HS--YVITDAIRDEKVL-KFKVDYNDVRPQFKSLETETDEKKLSAAENQQAF-LHPMRIQEITQYILNNFR 525 (1038)
T ss_dssp HCSEE----EE--ECHHHHHHHTSSC-CEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTT-TCHHHHHHHHHHHHHHHH
T ss_pred hCCee----Ee--ecHHHHHhCCCcC-CeEEEEEeccchhhhccccccHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence 01000 00 0011111100011 11111000 00 000000000001 1122222322222 1
Q ss_pred -h--------CCCcEEEEecchhhHHHHHHHHHhcC------------CCc-cccccC----------C----------C
Q psy16310 1075 -Q--------HPGRTLVFCNSISSVKRLTQLLTMLK------------CSP-LPLHAS----------M----------N 1112 (1493)
Q Consensus 1075 -~--------~~~~~IVF~~s~~~~~~l~~~L~~~~------------~~~-~~lhg~----------m----------~ 1112 (1493)
. .+.++||||+|+.+|..++..|...+ ..+ .++||+ | +
T Consensus 526 ~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~ 605 (1038)
T 2w00_A 526 QKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMD 605 (1038)
T ss_dssp HHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSC
T ss_pred HhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccc
Confidence 1 23579999999999999999998764 444 445642 2 3
Q ss_pred HH-----------------------------HHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHH
Q psy16310 1113 QR-----------------------------QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163 (1493)
Q Consensus 1113 ~~-----------------------------~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiq 1163 (1493)
+. .|..++++|++|+++|||+|+++.+|+|+|.+ +|+++|.|.+...|+|
T Consensus 606 ~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQ 684 (1038)
T 2w00_A 606 SSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQ 684 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceee
Confidence 22 48889999999999999999999999999999 7889999999999999
Q ss_pred HHhccCCCCCC----CeEEEEec
Q psy16310 1164 RSGRTARANNE----GLTLVLIE 1182 (1493)
Q Consensus 1164 r~GR~gR~g~~----G~~i~l~~ 1182 (1493)
|+||++|.+.. |.++.|+.
T Consensus 685 aIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 685 AFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHTTCCCCCTTCCSEEEEESSC
T ss_pred hhhccCcCCCCCCCcEEEEEccc
Confidence 99999998753 55555553
No 132
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.95 E-value=9.5e-28 Score=267.36 Aligned_cols=195 Identities=29% Similarity=0.489 Sum_probs=160.4
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
...+|+++++++.+++.+...||..|+++|.++++ .+..++|+++++|||||||++|++|+++.+..
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------------ 78 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------ 78 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------------
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHH-HHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------------
Confidence 34679999999999999999999999999999998 55578999999999999999999999987632
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
...++++||++||++|+.|+++.+..++...++++..++|+.....+...+..
T Consensus 79 ---------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 131 (224)
T 1qde_A 79 ---------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD 131 (224)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT
T ss_pred ---------------------------cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC
Confidence 12356799999999999999999999988889999999999877666655544
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
++|+|+||++|.+.+...... +.++++|||||||+++++++...+..++..+
T Consensus 132 -~~iiv~Tp~~l~~~~~~~~~~---~~~~~~iViDEah~~~~~~~~~~l~~i~~~~------------------------ 183 (224)
T 1qde_A 132 -AQIVVGTPGRVFDNIQRRRFR---TDKIKMFILDEADEMLSSGFKEQIYQIFTLL------------------------ 183 (224)
T ss_dssp -CSEEEECHHHHHHHHHTTSSC---CTTCCEEEEETHHHHHHTTCHHHHHHHHHHS------------------------
T ss_pred -CCEEEECHHHHHHHHHhCCcc---hhhCcEEEEcChhHHhhhhhHHHHHHHHHhC------------------------
Confidence 899999999999998876443 4578999999999999999999898888765
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+...|+++||||+++.+..++..
T Consensus 184 ---------~~~~~~i~lSAT~~~~~~~~~~~ 206 (224)
T 1qde_A 184 ---------PPTTQVVLLSATMPNDVLEVTTK 206 (224)
T ss_dssp ---------CTTCEEEEEESSCCHHHHHHHHH
T ss_pred ---------CccCeEEEEEeecCHHHHHHHHH
Confidence 33479999999999988776643
No 133
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.1e-28 Score=276.59 Aligned_cols=199 Identities=30% Similarity=0.489 Sum_probs=160.9
Q ss_pred hccccccC----CCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 766 QMAEWVKF----NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 766 ~~~~f~~l----~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
++.+|+++ ++++.++++|.+.||..|+|+|.++|+. +..|+|++++||||||||++|++|++..+..
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-------- 93 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPV-MLHGRELLASAPTGSGKTLAFSIPILMQLKQ-------- 93 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHCS--------
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------
Confidence 34556655 8999999999999999999999999985 5577899999999999999999999987732
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHH-
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL- 920 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~- 920 (1493)
....+.++|||+||++|+.|+++.++.++...++++..++|+.......
T Consensus 94 ------------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (245)
T 3dkp_A 94 ------------------------------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 143 (245)
T ss_dssp ------------------------------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTS
T ss_pred ------------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhh
Confidence 1234568999999999999999999999988889888887764333221
Q ss_pred HHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC---CChhHHHHHHHHhcccCCCCCceEEEEec
Q psy16310 921 RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES---GHFPELKNILDRVTMTETSQPRQTFVFSA 997 (1493)
Q Consensus 921 ~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~---~~~~~l~~il~~l~~~~~~~~~q~ll~SA 997 (1493)
.....+++|+|+||++|.+++...... ..+.++++|||||||+++++ +|...+..++..+. +...|+++|||
T Consensus 144 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~SA 218 (245)
T 3dkp_A 144 PKSSKKFDILVTTPNRLIYLLKQDPPG-IDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT----SHKVRRAMFSA 218 (245)
T ss_dssp TTSCCCCCEEEECHHHHHHHHHSSSCS-CCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC----CTTCEEEEEES
T ss_pred hhhcCCCCEEEECHHHHHHHHHhCCCC-cccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC----CCCcEEEEEec
Confidence 223457899999999999999865322 24678999999999999984 66677777766553 35689999999
Q ss_pred ccccchHhHHh
Q psy16310 998 TLTHSLKNSLN 1008 (1493)
Q Consensus 998 Tl~~~~~~~~~ 1008 (1493)
|++..+..++.
T Consensus 219 T~~~~v~~~~~ 229 (245)
T 3dkp_A 219 TFAYDVEQWCK 229 (245)
T ss_dssp SCCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 99988877664
No 134
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.95 E-value=1.2e-27 Score=262.97 Aligned_cols=193 Identities=37% Similarity=0.576 Sum_probs=165.1
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
+|+++++++.+++.|.+.||..|+|+|.++++ .+..++|+++++|||||||++|++|+++.+....
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~-~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~------------- 67 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALP-LALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ------------- 67 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHH-HHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-------------
Confidence 58899999999999999999999999999998 5557899999999999999999999998764210
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
....++++||++||++|+.|+++.+..+... +++..++|+.....+...+..+++
T Consensus 68 -----------------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 122 (207)
T 2gxq_A 68 -----------------------ERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGAD 122 (207)
T ss_dssp -----------------------CTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCS
T ss_pred -----------------------ccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCC
Confidence 1124567999999999999999999998754 778889999888877777777899
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||++|.+++..+... +.++++||+||||+++++++...+..++..+
T Consensus 123 i~v~T~~~l~~~~~~~~~~---~~~~~~iViDEah~~~~~~~~~~~~~i~~~~--------------------------- 172 (207)
T 2gxq_A 123 AVVATPGRALDYLRQGVLD---LSRVEVAVLDEADEMLSMGFEEEVEALLSAT--------------------------- 172 (207)
T ss_dssp EEEECHHHHHHHHHHTSSC---CTTCSEEEEESHHHHHHTTCHHHHHHHHHTS---------------------------
T ss_pred EEEECHHHHHHHHHcCCcc---hhhceEEEEEChhHhhccchHHHHHHHHHhC---------------------------
Confidence 9999999999999875543 5578999999999999999999998888654
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+...|+++||||+++.+..+..
T Consensus 173 ------~~~~~~i~~SAT~~~~~~~~~~ 194 (207)
T 2gxq_A 173 ------PPSRQTLLFSATLPSWAKRLAE 194 (207)
T ss_dssp ------CTTSEEEEECSSCCHHHHHHHH
T ss_pred ------CccCeEEEEEEecCHHHHHHHH
Confidence 3357999999999988776654
No 135
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=1.3e-27 Score=265.36 Aligned_cols=193 Identities=30% Similarity=0.542 Sum_probs=163.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
...|++++|++.++++|.+.||..|+|+|.++++.+ ..++|+++++|||||||++|++|++..+..
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------------- 78 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA-ILGMDVLCQAKSGMGKTAVFVLATLQQLEP------------- 78 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHCCC-------------
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCchhhhhhHHHHHhhhc-------------
Confidence 356999999999999999999999999999999854 467899999999999999999999976521
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhc-
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILN- 924 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~- 924 (1493)
...+.++||++||++|+.|+++.++.+.... ++++..++||.....+...+.
T Consensus 79 --------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 132 (220)
T 1t6n_A 79 --------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 132 (220)
T ss_dssp --------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH
T ss_pred --------------------------cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc
Confidence 1234579999999999999999999998776 799999999998877766554
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..++|+|+||++|.+++..+.. .+.++++||+||||++++ .+|...+..++..+ +...|+++||||+++.+
T Consensus 133 ~~~~i~v~T~~~l~~~~~~~~~---~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~ 204 (220)
T 1t6n_A 133 NCPHIVVGTPGRILALARNKSL---NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT-----PHEKQVMMFSATLSKEI 204 (220)
T ss_dssp SCCSEEEECHHHHHHHHHTTSS---CCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTS-----CSSSEEEEEESCCCTTT
T ss_pred CCCCEEEeCHHHHHHHHHhCCC---CcccCCEEEEcCHHHHhcccCcHHHHHHHHHhC-----CCcCeEEEEEeecCHHH
Confidence 3579999999999999887553 356889999999999987 47777777777665 35789999999999887
Q ss_pred HhHH
Q psy16310 1004 KNSL 1007 (1493)
Q Consensus 1004 ~~~~ 1007 (1493)
...+
T Consensus 205 ~~~~ 208 (220)
T 1t6n_A 205 RPVC 208 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 136
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.95 E-value=2.5e-27 Score=297.58 Aligned_cols=332 Identities=14% Similarity=0.173 Sum_probs=212.5
Q ss_pred CCCcHHHHhhHHHhh---ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 789 KTPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l---~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
..|+|+|.++++.++ ..+.++|++++||+|||++++..+ ..+..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~-------------------------------- 82 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKK-------------------------------- 82 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHH--------------------------------
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHh--------------------------------
Confidence 469999999997443 457799999999999999965444 33321
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~ 945 (1493)
.....++|||||+ .|+.|+.+.+++++. ++++..+.|+... .....++|+|+|++++.....
T Consensus 83 -------~~~~~~~LIv~P~-~l~~qw~~e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~--- 144 (500)
T 1z63_A 83 -------ENELTPSLVICPL-SVLKNWEEELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR--- 144 (500)
T ss_dssp -------TTCCSSEEEEECS-TTHHHHHHHHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---
T ss_pred -------cCCCCCEEEEccH-HHHHHHHHHHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---
Confidence 1223469999995 689999999999863 4566666665421 112356899999999865432
Q ss_pred CccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc-hHhHH---hhhccCcCc-----
Q psy16310 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS-LKNSL---NLKKGQSKS----- 1016 (1493)
Q Consensus 946 ~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~-~~~~~---~~~~~~~~~----- 1016 (1493)
.....+++||+||||++...+. .....+..+ ...+.+++|||+... ..+.. .........
T Consensus 145 ---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l------~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f 213 (500)
T 1z63_A 145 ---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKEL------KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEF 213 (500)
T ss_dssp ---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTS------CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHH
T ss_pred ---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhh------ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHH
Confidence 1123578999999999876442 344445444 335789999998643 22111 100000000
Q ss_pred -----ccccCCC-chhHHHHhHhccCCCcEEecccc-----ccccccceeeEEE--------------------------
Q psy16310 1017 -----KKVSKGD-PSIKRLQDLLNIKSPKIVDLTEK-----IGITKTLTESKIL-------------------------- 1059 (1493)
Q Consensus 1017 -----~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------------------- 1059 (1493)
..+.... .....+...+ .+..+..... ...+.. ....+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l---~~~~lrr~k~~~~~~~~lp~~-~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~ 289 (500)
T 1z63_A 214 KSKFATPIKKGDNMAKEELKAII---SPFILRRTKYDKAIINDLPDK-IETNVYCNLTPEQAAMYKAEVENLFNNIDSVT 289 (500)
T ss_dssp HTTTHHHHHTTCHHHHHHHHHHH---TTTEECCCTTCHHHHTTSCSE-EEEEEEECCCHHHHHHHHHHHHHHTTTTTTCC
T ss_pred HHHhccccccccHHHHHHHHHHH---hhHeeeecccccchhhcCCCC-eEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000000 0001111111 0100000000 000000 000000
Q ss_pred -------------------------------ecccchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhc-CCCc
Q psy16310 1060 -------------------------------CKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML-KCSP 1104 (1493)
Q Consensus 1060 -------------------------------~~~~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~-~~~~ 1104 (1493)
.....|...+..++.. .+.++||||+++..++.++..|... |+.+
T Consensus 290 ~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~ 369 (500)
T 1z63_A 290 GIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEV 369 (500)
T ss_dssp THHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCC
T ss_pred cccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCe
Confidence 1123344444444433 4679999999999999999999885 9999
Q ss_pred cccccCCCHHHHHHHHHHHhcC-CCC-eEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeE--EEE
Q psy16310 1105 LPLHASMNQRQRLKNLDRFRDQ-NNS-ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--LVL 1180 (1493)
Q Consensus 1105 ~~lhg~m~~~~R~~~~~~F~~g-~~~-VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i~l 1180 (1493)
..+||+|++.+|..++++|++| ... +||||+++++|+|+|++++||+||+|.++..|+||+||++|.|+.+.+ +.|
T Consensus 370 ~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~l 449 (500)
T 1z63_A 370 PFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKL 449 (500)
T ss_dssp CEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEE
T ss_pred EEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEE
Confidence 9999999999999999999998 454 899999999999999999999999999999999999999999987665 445
Q ss_pred ecCCCH
Q psy16310 1181 IESDEI 1186 (1493)
Q Consensus 1181 ~~~~e~ 1186 (1493)
+..+..
T Consensus 450 v~~~ti 455 (500)
T 1z63_A 450 ISVGTL 455 (500)
T ss_dssp EETTSH
T ss_pred EeCCCH
Confidence 555543
No 137
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.95 E-value=8.9e-28 Score=271.49 Aligned_cols=201 Identities=30% Similarity=0.499 Sum_probs=160.5
Q ss_pred cccccccc----CCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCc
Q psy16310 149 QMAEWVKF----NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 224 (1493)
Q Consensus 149 ~~~~f~~l----~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~ 224 (1493)
++.+|.++ ++++.+++++.+.||..|+|+|.++++ .+..++|++++||||||||++|++|+++++..
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-------- 93 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIP-VMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-------- 93 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS--------
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------
Confidence 34556655 899999999999999999999999998 55678999999999999999999999987732
Q ss_pred cCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHH-
Q psy16310 225 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL- 303 (1493)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~- 303 (1493)
....++++|||+||++||.|+++.+..++...++.+..++|+......+
T Consensus 94 ------------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (245)
T 3dkp_A 94 ------------------------------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 143 (245)
T ss_dssp ------------------------------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTS
T ss_pred ------------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhh
Confidence 1134567999999999999999999999988888888887764333222
Q ss_pred HHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhc---CChhhHHHHHHhhccccCCCccccccccC
Q psy16310 304 RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES---GHFPELKNILDRVTMTETSQPRQTMIESG 380 (1493)
Q Consensus 304 ~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~---~~~~~l~~il~~l~~~~~~~~~~~~~~~~ 380 (1493)
.....+++|+|+||++|.+++....... .+.++++|||||||+++++ +|...+..++..+.
T Consensus 144 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~~-~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~--------------- 207 (245)
T 3dkp_A 144 PKSSKKFDILVTTPNRLIYLLKQDPPGI-DLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT--------------- 207 (245)
T ss_dssp TTSCCCCCEEEECHHHHHHHHHSSSCSC-CCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC---------------
T ss_pred hhhcCCCCEEEECHHHHHHHHHhCCCCc-ccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC---------------
Confidence 1234568999999999999998653222 3668999999999999985 56666666665442
Q ss_pred CcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhh
Q psy16310 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLK 421 (1493)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~ 421 (1493)
....|+++||||+|+.+..++...
T Consensus 208 -----------------~~~~~~~~~SAT~~~~v~~~~~~~ 231 (245)
T 3dkp_A 208 -----------------SHKVRRAMFSATFAYDVEQWCKLN 231 (245)
T ss_dssp -----------------CTTCEEEEEESSCCHHHHHHHHHH
T ss_pred -----------------CCCcEEEEEeccCCHHHHHHHHHh
Confidence 345799999999999888776543
No 138
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=3.6e-27 Score=261.83 Aligned_cols=193 Identities=30% Similarity=0.543 Sum_probs=161.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|+++++++.++++|.+.||..|+++|.++++ .+..++|+++++|||||||++|++|+++.+..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~-------------- 78 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP-QAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 78 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC--------------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCCchhhhhhHHHHHhhhc--------------
Confidence 569999999999999999999999999999998 45577899999999999999999999876521
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcC-
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNK- 308 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~- 308 (1493)
...++++||++||++|+.|+++.+..+.... ++++..++|+.....+...+..
T Consensus 79 -------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 133 (220)
T 1t6n_A 79 -------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 133 (220)
T ss_dssp -------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHS
T ss_pred -------------------------cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcC
Confidence 1234579999999999999999999998765 7999999999988777666654
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.++|+|+||++|.+++...... +.++++|||||||++++ .++...+..++..+
T Consensus 134 ~~~i~v~T~~~l~~~~~~~~~~---~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~----------------------- 187 (220)
T 1t6n_A 134 CPHIVVGTPGRILALARNKSLN---LKHIKHFILDECDKMLEQLDMRRDVQEIFRMT----------------------- 187 (220)
T ss_dssp CCSEEEECHHHHHHHHHTTSSC---CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTS-----------------------
T ss_pred CCCEEEeCHHHHHHHHHhCCCC---cccCCEEEEcCHHHHhcccCcHHHHHHHHHhC-----------------------
Confidence 5799999999999998875543 55889999999999987 46667777776544
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+...|+++||||+++.+..+..
T Consensus 188 ----------~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 188 ----------PHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp ----------CSSSEEEEEESCCCTTTHHHHH
T ss_pred ----------CCcCeEEEEEeecCHHHHHHHH
Confidence 3457999999999988776554
No 139
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.95 E-value=1.4e-27 Score=299.82 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=104.3
Q ss_pred ccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhc-CCCccccccCCCHHHHHHHHHHHhcC-CCe-EEEEe
Q psy16310 528 KHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML-KCSPLPLHASMNQRQRLKNLDRFRDQ-NNS-ILLAT 601 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~-~~~~~~lhg~~~~~~R~~vl~~Fr~g-~~~-VLVaT 601 (1493)
..+.|...+..++.. .+.++||||+++..+..+...|... ++.+..+||++++.+|..+++.|++| ... +|+||
T Consensus 322 ~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st 401 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 401 (500)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEEC
T ss_pred hcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEec
Confidence 345677777776654 4679999999999999999999875 99999999999999999999999998 555 79999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE--EEEecCC
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--VVLIESD 651 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~--i~l~~~~ 651 (1493)
+++++|+|+|++++||+||+|.|+..|+||+||++|.|..+.+ +.|+..+
T Consensus 402 ~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 402 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred ccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999999999999999999999999999999999999987655 4455543
No 140
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.94 E-value=3.4e-26 Score=300.73 Aligned_cols=339 Identities=14% Similarity=0.118 Sum_probs=205.9
Q ss_pred CChHHHHhhhhhhhc-------------cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHH
Q psy16310 173 TPTKIQSMVMPSALL-------------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 239 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~-------------~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1493)
.|+|+|.++++.++. .+++.+++++||||||+++ ++++..+..
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~----------------------- 326 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE----------------------- 326 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-----------------------
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-----------------------
Confidence 599999999996654 1468999999999999997 666644311
Q ss_pred HHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh-cCCCCEEEeCcH
Q psy16310 240 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL-NKCPHILVATPG 318 (1493)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l-~~~~~IiV~TP~ 318 (1493)
.....++||||||++|+.|+.+.|..++.. .+.|+.+.......+ ..+++|+|+||+
T Consensus 327 ----------------~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiq 384 (1038)
T 2w00_A 327 ----------------LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQ 384 (1038)
T ss_dssp ----------------CTTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHH
T ss_pred ----------------cCCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHH
Confidence 112357999999999999999999887643 123455555555555 356899999999
Q ss_pred HHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCC
Q psy16310 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS 398 (1493)
Q Consensus 319 ~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1493)
+|..++..... ...+....+||+||||++...+ ....|+..+
T Consensus 385 kl~~~l~~~~~-~~~~~~~~lvIiDEAHrs~~~~---~~~~I~~~~---------------------------------- 426 (1038)
T 2w00_A 385 KLNNLMKAESD-LPVYNQQVVFIFDECHRSQFGE---AQKNLKKKF---------------------------------- 426 (1038)
T ss_dssp HHHHHHHHCCC-CGGGGSCEEEEEESCCTTHHHH---HHHHHHHHC----------------------------------
T ss_pred HHHHHHhcccc-hhccccccEEEEEccchhcchH---HHHHHHHhC----------------------------------
Confidence 99998865321 1124467899999999986422 234444433
Q ss_pred CCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhcc----C
Q psy16310 399 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH----D 474 (1493)
Q Consensus 399 ~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 474 (1493)
+..++++||||+........ .. ....+++ ..+.. +.+...+.... +++. .
T Consensus 427 p~a~~lgfTATP~~~~~~~~---------------~~---~t~~~FG---~~i~~----Y~l~~AI~dg~-l~p~~v~y~ 480 (1038)
T 2w00_A 427 KRYYQFGFTGTPIFPENALG---------------SE---TTASVFG---RELHS----YVITDAIRDEK-VLKFKVDYN 480 (1038)
T ss_dssp SSEEEEEEESSCCCSTTCTT---------------SC---CHHHHHC---SEEEE----ECHHHHHHHTS-SCCEEEEEC
T ss_pred CcccEEEEeCCccccccchh---------------hh---HHHHHhC---CeeEe----ecHHHHHhCCC-cCCeEEEEE
Confidence 23689999999974321000 00 0000000 00000 00000000000 0000 0
Q ss_pred -CcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHH-----HHHhh------
Q psy16310 475 -EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY-----YFILQ------ 542 (1493)
Q Consensus 475 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~-----~~l~~------ 542 (1493)
....+ .... ... . .... ... ....... ...+...+. ++...
T Consensus 481 ~v~~~~--~~~~-~e~-d-~~~~---~~i------------------~~~~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~ 533 (1038)
T 2w00_A 481 DVRPQF--KSLE-TET-D-EKKL---SAA------------------ENQQAFL-HPMRIQEITQYILNNFRQKTHRTFP 533 (1038)
T ss_dssp CCCGGG--HHHH-TCC-C-HHHH---HHT------------------CSTTTTT-CHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred eccchh--hhcc-ccc-c-HHHH---HHH------------------HHHHHhc-CHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 00000 0000 000 0 0000 000 0000001 111222221 12111
Q ss_pred --CCCcEEEEecchhhHHHHHHHHHhcC------------CCc-cccccC----------C----------CHH------
Q psy16310 543 --HPGRTLVFCNSISSVKRLTQLLTMLK------------CSP-LPLHAS----------M----------NQR------ 581 (1493)
Q Consensus 543 --~~~~~IIF~~s~~~a~~L~~~L~~~~------------~~~-~~lhg~----------~----------~~~------ 581 (1493)
.+.++||||+|+..|..++..|...+ +.+ .++||+ + ++.
T Consensus 534 ~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~ 613 (1038)
T 2w00_A 534 GSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLD 613 (1038)
T ss_dssp SCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHH
T ss_pred cCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHH
Confidence 23579999999999999999997654 444 345542 2 322
Q ss_pred -----------------------HHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccC
Q psy16310 582 -----------------------QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638 (1493)
Q Consensus 582 -----------------------~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~ 638 (1493)
.|..++++|++|+++|||+|+++.+|+|+|.+ +|+.+|.|.+...|+||+||++|.
T Consensus 614 ~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~ 692 (1038)
T 2w00_A 614 AAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRI 692 (1038)
T ss_dssp HHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcC
Confidence 47889999999999999999999999999999 788999999999999999999998
Q ss_pred CCC----CeEEEEec
Q psy16310 639 NNE----GLTVVLIE 649 (1493)
Q Consensus 639 g~~----G~~i~l~~ 649 (1493)
+.. |.++.++.
T Consensus 693 ~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 693 YDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCTTCCSEEEEESSC
T ss_pred CCCCCCcEEEEEccc
Confidence 764 67776664
No 141
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=6.1e-24 Score=262.39 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=111.3
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
-+|| .|||+|..++|. +..|+ |++++||+|||++|++|++...+.
T Consensus 75 ~lG~-~Pt~VQ~~~ip~-LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~------------------------------- 119 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAV-LHEGK--IAEMKTGEGKTLVATLAVALNALT------------------------------- 119 (997)
T ss_dssp HTCC-CCCHHHHHHHHH-HHTTS--EEECCSTHHHHHHHHHHHHHHHTT-------------------------------
T ss_pred HhCC-CCcHHHHhhccc-ccCCc--eeeccCCCchHHHHHHHHHHHHHh-------------------------------
Confidence 3799 999999999995 55665 999999999999999999644322
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHh
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQL 943 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~ 943 (1493)
+.+|+||+||++||.|+++.+..++.++++++.+++||.+...... ..++||+||||++| .++|..
T Consensus 120 -----------G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd 186 (997)
T 2ipc_A 120 -----------GKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRD 186 (997)
T ss_dssp -----------CSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHH
T ss_pred -----------CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHH
Confidence 2359999999999999999999999999999999999998654333 34689999999999 899987
Q ss_pred CcC---cccccc---ceeEEEecccchhc
Q psy16310 944 GHF---HLTELY---KINYLVIDETDRMI 966 (1493)
Q Consensus 944 ~~~---~~~~l~---~l~~lVlDEah~ll 966 (1493)
+.. ....++ .+.++||||||+|+
T Consensus 187 ~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 187 NMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred hhhcchhhcccccCCCcceEEEechHHHH
Confidence 531 112356 79999999999987
No 142
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=2.4e-24 Score=275.86 Aligned_cols=345 Identities=16% Similarity=0.190 Sum_probs=216.2
Q ss_pred CCcHHHHhhHHHhh--------ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHH
Q psy16310 790 TPTKIQSMVMPSAL--------LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l--------~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (1493)
.++|+|.+++..++ ..+...|++.+||+|||+.++..+...+.....
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~------------------------- 109 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD------------------------- 109 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-------------------------
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-------------------------
Confidence 68999999997543 345689999999999999977666544321100
Q ss_pred hhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHH--H-HHhcC-----CCcEEEEC
Q psy16310 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ--L-RILNK-----CPHILVAT 933 (1493)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~--~-~~l~~-----~~~IlV~T 933 (1493)
......++|||||+ .|+.|+.+.+.++... .+.+..++||...... . ..+.. ..+|+|+|
T Consensus 110 ----------~~p~~~~~LiV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~t 177 (644)
T 1z3i_X 110 ----------CKPEIDKVIVVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIIS 177 (644)
T ss_dssp ----------SSCSCSCEEEEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEE
T ss_pred ----------ccCCCCcEEEEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEee
Confidence 01123469999997 8999999999998644 4666777776543221 1 12221 36899999
Q ss_pred cHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch-HhHHhhh--
Q psy16310 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL-KNSLNLK-- 1010 (1493)
Q Consensus 934 P~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~-~~~~~~~-- 1010 (1493)
++.+..... .+ ....+++||+||||++-... ......+..+ .....+++|||+-..- .+.....
T Consensus 178 y~~l~~~~~--~l---~~~~~~~vI~DEaH~ikn~~--~~~~~al~~l------~~~~rl~LTgTPiqN~l~El~sll~f 244 (644)
T 1z3i_X 178 YETFRLHAE--VL---HKGKVGLVICDEGHRLKNSD--NQTYLALNSM------NAQRRVLISGTPIQNDLLEYFSLVHF 244 (644)
T ss_dssp HHHHHHHTT--TT---TTSCCCEEEETTGGGCCTTC--HHHHHHHHHH------CCSEEEEECSSCSGGGGGGCHHHHHH
T ss_pred HHHHHhhHH--Hh---hcCCccEEEEECceecCChh--hHHHHHHHhc------ccCcEEEEecCcccCCHHHHHHHHHh
Confidence 999865431 11 12357899999999986432 2334444444 2356899999986431 1110000
Q ss_pred -c----cCc------Ccc------cccCCC-------chhHHHHhHh---ccC----------CCcEE-----eccccc-
Q psy16310 1011 -K----GQS------KSK------KVSKGD-------PSIKRLQDLL---NIK----------SPKIV-----DLTEKI- 1047 (1493)
Q Consensus 1011 -~----~~~------~~~------~~~~~~-------~~~~~l~~~~---~~~----------~~~~~-----~~~~~~- 1047 (1493)
. +.. ... ...... ..+..+...+ -+. ++... .+....
T Consensus 245 l~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~ 324 (644)
T 1z3i_X 245 VNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQK 324 (644)
T ss_dssp HHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHH
T ss_pred hCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHH
Confidence 0 000 000 000000 0000000000 000 00000 000000
Q ss_pred ------------------c----------------------------------------ccccceeeEEEecccchhhHH
Q psy16310 1048 ------------------G----------------------------------------ITKTLTESKILCKHDEKDSYL 1069 (1493)
Q Consensus 1048 ------------------~----------------------------------------~~~~~~~~~~~~~~~~k~~~l 1069 (1493)
. ................|...+
T Consensus 325 ~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l 404 (644)
T 1z3i_X 325 ELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVL 404 (644)
T ss_dssp HHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHH
Confidence 0 000000000001112333334
Q ss_pred HHHHH----hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCC---eEEeehhhhcccc
Q psy16310 1070 YYFIL----QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLD 1142 (1493)
Q Consensus 1070 ~~~l~----~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~---VLVaTdv~~~GiD 1142 (1493)
..++. ..+.++||||+++..++.+...|...|+.+..+||+|++.+|..++++|++|... +||+|+++++|||
T Consensus 405 ~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 405 DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp HHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred HHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 33332 2367999999999999999999999999999999999999999999999998764 8999999999999
Q ss_pred CCCccEEEEecCCCChhHHHHHHhccCCCCCCCeE--EEEecCC
Q psy16310 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--LVLIESD 1184 (1493)
Q Consensus 1143 ip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i~l~~~~ 1184 (1493)
++++++||+||+|.++..|.|++||++|.|+...+ +.|+..+
T Consensus 485 l~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 485 LIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred cccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999999999999999987654 4455554
No 143
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.92 E-value=3.6e-24 Score=273.49 Aligned_cols=127 Identities=21% Similarity=0.220 Sum_probs=113.2
Q ss_pred hhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccc
Q psy16310 1065 KDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141 (1493)
Q Consensus 1065 k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~Gi 1141 (1493)
+...+...+. ..+.++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|+
T Consensus 424 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~Gl 503 (664)
T 1c4o_A 424 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGL 503 (664)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTC
T ss_pred hHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCc
Confidence 3444444443 3467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEecC-----CCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHH
Q psy16310 1142 DIPGIEHVIHYHV-----PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1142 Dip~v~~VI~~d~-----p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
|+|+|++||++|. |.+..+|+||+|||||.+ .|.+++|+++.+....+.+
T Consensus 504 Dip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 504 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp CCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred cCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 9999999999997 999999999999999995 8999999998876555444
No 144
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.1e-24 Score=283.69 Aligned_cols=396 Identities=16% Similarity=0.172 Sum_probs=228.4
Q ss_pred CChHHHHhhhhhhh---ccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 173 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l---~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
.++|||.+++..++ ..+.+.|++.+||+|||++++..+...+...
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-------------------------------- 283 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-------------------------------- 283 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH--------------------------------
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc--------------------------------
Confidence 68999999996332 3678999999999999999766654433221
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH------------hcCCCCEEEeCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI------------LNKCPHILVATP 317 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~------------l~~~~~IiV~TP 317 (1493)
.....+||||| ..|+.|+.+.|..++. ++++.+++|+......... ....++|+|+|+
T Consensus 284 -------~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 -------RQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp -------SCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred -------CCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 12234899999 7888999999998863 5777778887655444332 123468999999
Q ss_pred HHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCC
Q psy16310 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397 (1493)
Q Consensus 318 ~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1493)
+.+...... +. -..+++|||||||++- +....+...+..+.
T Consensus 354 ~~l~~~~~~----l~-~~~w~~vIvDEaH~lk--n~~s~~~~~l~~l~-------------------------------- 394 (800)
T 3mwy_W 354 EYILKDRAE----LG-SIKWQFMAVDEAHRLK--NAESSLYESLNSFK-------------------------------- 394 (800)
T ss_dssp THHHHTHHH----HH-TSEEEEEEETTGGGGC--CSSSHHHHHHTTSE--------------------------------
T ss_pred HHHHhhHHH----Hh-cCCcceeehhhhhhhc--CchhHHHHHHHHhh--------------------------------
Confidence 999764321 11 1157899999999983 23334444443331
Q ss_pred CCCceEEEEeeccc-hhhhh---hhhhhcccccc----ccccCCCch-hhhHHhhhhccCCcccchhhh-h-ccccccch
Q psy16310 398 SQPRQTFVFSATLT-HSLKN---SLNLKKGQSKS----KKVSKGDPS-IKRLQDLLNIKSPKIVDLTEK-I-GITKTLTE 466 (1493)
Q Consensus 398 ~~~~q~il~SATl~-~~~~~---~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 466 (1493)
....+++|||+- +.+.. ++......... ......... ...+..+.....+.+...... . ...+....
T Consensus 395 --~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~ 472 (800)
T 3mwy_W 395 --VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTE 472 (800)
T ss_dssp --EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEE
T ss_pred --hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEE
Confidence 135688999973 22222 22221111000 000000000 000111111111111000000 0 00000001
Q ss_pred hhhhhccCCcchhhHHHHhcCCC-----------cchhhHHHhhhh-ccCCccccccccccc-------ccccccccccc
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPG-----------RTLCEEIQDLLN-IKSPKIVDLTEKIGI-------TKTLTESKILC 527 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 527 (1493)
..+.+........+|..+..... ..+...+..+.. ..+|.+......... ...........
T Consensus 473 ~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (800)
T 3mwy_W 473 RILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLI 552 (800)
T ss_dssp EEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhh
Confidence 11111111111111111110000 000000000000 001111100000000 00000001122
Q ss_pred ccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC---eEEEEe
Q psy16310 528 KHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLAT 601 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~---~VLVaT 601 (1493)
..+.|...|..++.. .+.++||||+....+..|..+|...|+.+..+||+++..+|..+++.|++|.. .+|++|
T Consensus 553 ~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt 632 (800)
T 3mwy_W 553 MSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST 632 (800)
T ss_dssp HTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH
T ss_pred hcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec
Confidence 346677777777654 46799999999999999999999999999999999999999999999998655 499999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC--eEEEEecCC
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESD 651 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G--~~i~l~~~~ 651 (1493)
.++++|||++.+++||+||+|.|+..++||+||+.|.|... .++.|++.+
T Consensus 633 ~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 633 RAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp HHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred ccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 99999999999999999999999999999999999999764 445566554
No 145
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.5e-24 Score=278.41 Aligned_cols=338 Identities=17% Similarity=0.185 Sum_probs=218.9
Q ss_pred CCcHHHHhhHHHhh---ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 790 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l---~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
.++|+|.+++..++ ..+.+.|++.+||+|||+.++..+...+...
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-------------------------------- 283 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-------------------------------- 283 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH--------------------------------
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc--------------------------------
Confidence 68999999997433 3678999999999999998766554433221
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH------------hcCCCcEEEECc
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI------------LNKCPHILVATP 934 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~------------l~~~~~IlV~TP 934 (1493)
.....+||||| ..|+.|+.+.+.+++ .++++.+.+|+......... ....++|+|+|+
T Consensus 284 -------~~~~~~LIV~P-~sll~qW~~E~~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 -------RQNGPHIIVVP-LSTMPAWLDTFEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp -------SCCSCEEEECC-TTTHHHHHHHHHHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred -------CCCCCEEEEEC-chHHHHHHHHHHHHC--CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 22235899999 678899999999875 34677777776554433322 123568999999
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc-hHhH---Hhhh
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS-LKNS---LNLK 1010 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~-~~~~---~~~~ 1010 (1493)
+.+...... + ....+++|||||||++-... ..+...+..+ .....+++|||+-.. +.++ +...
T Consensus 354 ~~l~~~~~~----l-~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l------~~~~rl~LTgTPiqN~l~el~~ll~fL 420 (800)
T 3mwy_W 354 EYILKDRAE----L-GSIKWQFMAVDEAHRLKNAE--SSLYESLNSF------KVANRMLITGTPLQNNIKELAALVNFL 420 (800)
T ss_dssp THHHHTHHH----H-HTSEEEEEEETTGGGGCCSS--SHHHHHHTTS------EEEEEEEECSCCCSSCSHHHHHHHHHH
T ss_pred HHHHhhHHH----H-hcCCcceeehhhhhhhcCch--hHHHHHHHHh------hhccEEEeeCCcCCCCHHHHHHHHHHh
Confidence 998754321 0 11257899999999985432 3445555544 234678999998522 2221 1111
Q ss_pred ccCcCc----ccccCCCc----hhHHHHhHhccCCCcEEeccccccc--cccceeeEE----------------------
Q psy16310 1011 KGQSKS----KKVSKGDP----SIKRLQDLLNIKSPKIVDLTEKIGI--TKTLTESKI---------------------- 1058 (1493)
Q Consensus 1011 ~~~~~~----~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------------- 1058 (1493)
...... ........ .+..+...+ .+..+........ ........+
T Consensus 421 ~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l---~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~ 497 (800)
T 3mwy_W 421 MPGRFTIDQEIDFENQDEEQEEYIHDLHRRI---QPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSA 497 (800)
T ss_dssp CSCCC---------CCTTHHHHHHHHHHHTT---GGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-
T ss_pred CccccCchhhhcccccchhHHHHHHHHHHHH---hHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 000000 00000000 011111100 0000000000000 000000000
Q ss_pred -----------------------------------------------------EecccchhhHHHHHHHh---CCCcEEE
Q psy16310 1059 -----------------------------------------------------LCKHDEKDSYLYYFILQ---HPGRTLV 1082 (1493)
Q Consensus 1059 -----------------------------------------------------~~~~~~k~~~l~~~l~~---~~~~~IV 1082 (1493)
......|...+..++.. .+.++||
T Consensus 498 l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLI 577 (800)
T 3mwy_W 498 LTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLI 577 (800)
T ss_dssp ---------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEE
T ss_pred HhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEE
Confidence 00123344445555443 4679999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC---CeEEeehhhhccccCCCccEEEEecCCCChh
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~---~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~ 1159 (1493)
||+.+..++.|...|...|+.+..+||+++..+|..++++|+++.. .+|++|.+++.|||++.+++||+||+|.++.
T Consensus 578 Fsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~ 657 (800)
T 3mwy_W 578 FSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQ 657 (800)
T ss_dssp EESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSH
T ss_pred EechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChh
Confidence 9999999999999999999999999999999999999999998655 4899999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCeE--EEEecCCC
Q psy16310 1160 IYIHRSGRTARANNEGLT--LVLIESDE 1185 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~--i~l~~~~e 1185 (1493)
.++||+||+.|.|+...+ +.|++.+-
T Consensus 658 ~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 658 ADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp HHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred hHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 999999999999976544 44566653
No 146
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=1.4e-23 Score=268.80 Aligned_cols=123 Identities=15% Similarity=0.245 Sum_probs=107.4
Q ss_pred cCchhhHHHHHHhh----CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC---eEEEEe
Q psy16310 529 HDEKDSYLYYFILQ----HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLAT 601 (1493)
Q Consensus 529 ~~~k~~~l~~~l~~----~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~---~VLVaT 601 (1493)
.+.|...+..++.. .+.++||||+....+..+...|...++.+..+||+++..+|..+++.|++|.. .+|++|
T Consensus 397 ~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 397 LSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp GSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred cChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 35566666555533 46799999999999999999999999999999999999999999999999876 489999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC--eEEEEecCC
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESD 651 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G--~~i~l~~~~ 651 (1493)
+++++|||++++++||+||+|.|+..|.|++||++|.|... .++.|++.+
T Consensus 477 ~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 477 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp GGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred ccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999999999999999999999999765 445555554
No 147
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=231.04 Aligned_cols=163 Identities=26% Similarity=0.456 Sum_probs=134.6
Q ss_pred cCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHH
Q psy16310 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114 (1493)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~ 1114 (1493)
+.+|..+.+.........+.+.++.+....|...|..++...++++||||+++..++.++..|...|+.+..+||+|++.
T Consensus 12 ~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~ 91 (191)
T 2p6n_A 12 DLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQE 91 (191)
T ss_dssp ----------------CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHH
T ss_pred cCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 34455555555555667888999999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCC-CHHHHHHHH
Q psy16310 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD-EIPLYIKMF 1193 (1493)
Q Consensus 1115 ~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-e~~~~~~~~ 1193 (1493)
+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+++. +...+..+.
T Consensus 92 ~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~ 171 (191)
T 2p6n_A 92 ERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLK 171 (191)
T ss_dssp HHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 666666665
Q ss_pred Hhcc
Q psy16310 1194 NSLE 1197 (1493)
Q Consensus 1194 ~~~~ 1197 (1493)
+.+.
T Consensus 172 ~~l~ 175 (191)
T 2p6n_A 172 ALLL 175 (191)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 148
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=8.1e-24 Score=261.30 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=110.5
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
+|+ +||++|..++| .+..|+ |+++.||||||++|++|++...+
T Consensus 76 lG~-~Pt~VQ~~~ip-~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL--------------------------------- 118 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGA-VLHEGK--IAEMKTGEGKTLVATLAVALNAL--------------------------------- 118 (997)
T ss_dssp TCC-CCCHHHHHHHH-HHHTTS--EEECCSTHHHHHHHHHHHHHHHT---------------------------------
T ss_pred hCC-CCcHHHHhhcc-cccCCc--eeeccCCCchHHHHHHHHHHHHH---------------------------------
Confidence 699 99999999999 555665 99999999999999999964332
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
.+..|+||+||++||.|++.++..++.++++++++++||++...... ..++||+|+||++| .++|..+
T Consensus 119 ---------~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~ 187 (997)
T 2ipc_A 119 ---------TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDN 187 (997)
T ss_dssp ---------TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHT
T ss_pred ---------hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHh
Confidence 12359999999999999999999999999999999999998554433 34689999999999 8888765
Q ss_pred Cc---cccccc---cccEEEEecCchhhh
Q psy16310 328 HF---HLTELY---KINYLVIDETDRMIE 350 (1493)
Q Consensus 328 ~~---~~~~l~---~i~~lViDEAh~ll~ 350 (1493)
.. ....++ .+.++||||||.||.
T Consensus 188 m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 188 MAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp SCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred hhcchhhcccccCCCcceEEEechHHHHH
Confidence 31 112355 789999999999983
No 149
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.91 E-value=4.4e-24 Score=224.09 Aligned_cols=150 Identities=31% Similarity=0.503 Sum_probs=140.7
Q ss_pred cccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC
Q psy16310 1050 TKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128 (1493)
Q Consensus 1050 ~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~ 1128 (1493)
...+.+.++.+....|...|..++... ++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 456788889999999999998888754 6799999999999999999999999999999999999999999999999999
Q ss_pred CeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1129 ~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+.+.+...+.++.+.++..
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998877654
No 150
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.91 E-value=3.8e-23 Score=264.05 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=109.9
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC-
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV- 621 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~- 621 (1493)
.+.++||||+|+..++.|+..|...++.+..+||+|++.+|..+++.|+.|+++|||||+++++|+|+|+|++||+||.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 622 ----PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 622 ----P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|.+..+|+||+|||||.| .|.|++++++.+......+.
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 999999999999999996 89999999888776665553
No 151
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.91 E-value=1.1e-22 Score=259.69 Aligned_cols=115 Identities=23% Similarity=0.309 Sum_probs=108.2
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecC-
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV- 1154 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~- 1154 (1493)
.+.++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|+|+|+|++||++|.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHH
Q psy16310 1155 ----PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191 (1493)
Q Consensus 1155 ----p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~ 1191 (1493)
|.+..+|+||+|||||. ..|.+++|+++.+......
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~ 563 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIA 563 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHH
Confidence 99999999999999998 7899999999887654443
No 152
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.90 E-value=1.3e-23 Score=230.41 Aligned_cols=154 Identities=31% Similarity=0.465 Sum_probs=138.4
Q ss_pred ceeeEEEecccchhhHHHHHHHh-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeE
Q psy16310 1053 LTESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131 (1493)
Q Consensus 1053 ~~~~~~~~~~~~k~~~l~~~l~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VL 1131 (1493)
+.+..+.+....|...+..++.. .++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+||
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 34556677888999999888765 47899999999999999999999999999999999999999999999999999999
Q ss_pred EeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCC
Q psy16310 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206 (1493)
Q Consensus 1132 VaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p 1206 (1493)
|||+++++|+|+|++++||+||+|.+...|+||+|||||.|+.|.|++|+++.+...+..+.+.++..+.....|
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998887665433333
No 153
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=7.1e-24 Score=225.49 Aligned_cols=152 Identities=28% Similarity=0.516 Sum_probs=136.6
Q ss_pred ccccceeeEEEecccc-hhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC
Q psy16310 1049 ITKTLTESKILCKHDE-KDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126 (1493)
Q Consensus 1049 ~~~~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g 1126 (1493)
....+.+.++.+.... |...+..++... ++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3457888888888765 888888888765 57899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeehhhhccccCCCccEEEEecCC------CChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1127 NNSILLATDVAARGLDIPGIEHVIHYHVP------RTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1127 ~~~VLVaTdv~~~GiDip~v~~VI~~d~p------~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
+.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.++..+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 999999999999999999999999999999999999988877543
No 154
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=1.1e-23 Score=222.94 Aligned_cols=150 Identities=25% Similarity=0.470 Sum_probs=136.8
Q ss_pred cccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC
Q psy16310 1050 TKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128 (1493)
Q Consensus 1050 ~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~ 1128 (1493)
...+.+.++.+....|...+..++... ++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 456788889999999999999988765 5789999999999999999999999999999999999999999999999999
Q ss_pred CeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCC-CHHHHHHHHHhcccc
Q psy16310 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD-EIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1129 ~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-e~~~~~~~~~~~~~~ 1199 (1493)
+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+++. +...+..+.+.++..
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN 154 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCC
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999876 456677777766543
No 155
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.90 E-value=2.1e-23 Score=219.53 Aligned_cols=148 Identities=24% Similarity=0.415 Sum_probs=132.9
Q ss_pred cceeeEEEecccc-hhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCC
Q psy16310 1052 TLTESKILCKHDE-KDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129 (1493)
Q Consensus 1052 ~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~ 1129 (1493)
.+.+.++.+...+ |...+..++... ++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 4677788888777 999988888765 57899999999999999999999999999999999999999999999999999
Q ss_pred eEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1130 VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+++.+...+..+.+.++..
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 152 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999999999999999988877654
No 156
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=225.08 Aligned_cols=151 Identities=30% Similarity=0.504 Sum_probs=127.4
Q ss_pred cccccceeeEEEecccchhhHHHHHHHhC--CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc
Q psy16310 1048 GITKTLTESKILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125 (1493)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~ 1125 (1493)
....++.+.++.+....|...|..++... ++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45667889999999999999999998876 5789999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1126 g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
|+++|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+..
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998888888777654
No 157
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=4e-23 Score=236.58 Aligned_cols=154 Identities=31% Similarity=0.465 Sum_probs=137.4
Q ss_pred ceeeEEEecccchhhHHHHHHHh-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeE
Q psy16310 1053 LTESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131 (1493)
Q Consensus 1053 ~~~~~~~~~~~~k~~~l~~~l~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VL 1131 (1493)
+.+.++.+....|...+..++.. .++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 46777888899999999888765 47899999999999999999999999999999999999999999999999999999
Q ss_pred EeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCC
Q psy16310 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206 (1493)
Q Consensus 1132 VaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p 1206 (1493)
|||+++++|+|+|++++||+||+|.+...|+||+|||||.|+.|.|++|+++.+...+..+.+.++..+.....|
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999887765433333
No 158
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.89 E-value=3.4e-23 Score=217.27 Aligned_cols=142 Identities=32% Similarity=0.529 Sum_probs=131.4
Q ss_pred cccccccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeE
Q psy16310 519 TLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597 (1493)
Q Consensus 519 ~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~V 597 (1493)
.+....+.+..+.|...|..++... ++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 9 ~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~v 88 (163)
T 2hjv_A 9 NIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRY 88 (163)
T ss_dssp CEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred cceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeE
Confidence 4556667777888999999888764 569999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 598 LVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
||||+++++|+|+|++++||+||+|.++..|+||+||+||.|..|.|++|+++.+...+..+.
T Consensus 89 lv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~ 151 (163)
T 2hjv_A 89 LVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIE 151 (163)
T ss_dssp EEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHH
T ss_pred EEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998887777664
No 159
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.89 E-value=3.4e-23 Score=222.45 Aligned_cols=142 Identities=29% Similarity=0.547 Sum_probs=127.5
Q ss_pred ccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeE
Q psy16310 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597 (1493)
Q Consensus 518 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~V 597 (1493)
..+......+....|...|..++...++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 28 ~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~v 107 (191)
T 2p6n_A 28 LDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 107 (191)
T ss_dssp CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSE
T ss_pred cCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEE
Confidence 44556666777888999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCC-cchhhhhh
Q psy16310 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD-EIPLKTKF 659 (1493)
Q Consensus 598 LVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~-e~~~~~~l 659 (1493)
||||+++++|+|+|++++||+||+|.++..|+||+|||||.|..|.|++|+++. +......+
T Consensus 108 LvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l 170 (191)
T 2p6n_A 108 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDL 170 (191)
T ss_dssp EEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHH
T ss_pred EEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876 44444444
No 160
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.89 E-value=6.3e-23 Score=224.82 Aligned_cols=139 Identities=34% Similarity=0.507 Sum_probs=126.4
Q ss_pred ccccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEE
Q psy16310 522 ESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600 (1493)
Q Consensus 522 ~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVa 600 (1493)
...+.+..+.|...|..++... ++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+||||
T Consensus 8 ~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlva 87 (212)
T 3eaq_A 8 EEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVA 87 (212)
T ss_dssp CEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEE
T ss_pred eeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 3445667788999999888754 689999999999999999999999999999999999999999999999999999999
Q ss_pred echhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 601 Tdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|+++++|+|+|+|++||+||+|.++..|+||+|||||.|++|.|++|+++.+...+..+.
T Consensus 88 T~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~ 147 (212)
T 3eaq_A 88 TDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALE 147 (212)
T ss_dssp CTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHH
T ss_pred cChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877666553
No 161
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.89 E-value=1.2e-21 Score=250.02 Aligned_cols=117 Identities=22% Similarity=0.316 Sum_probs=109.8
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC-
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV- 621 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~- 621 (1493)
.+.++||||+|+..++.|+..|...|+.+..+||+|++.+|..+++.|+.|++.|||||+++++|+|+|+|++||+||.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 622 ----PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 622 ----P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|.+..+|+||+|||||. ..|.|++++++.+......+.
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999999999999998 689999999988776665553
No 162
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.88 E-value=6.8e-23 Score=216.72 Aligned_cols=134 Identities=27% Similarity=0.511 Sum_probs=125.0
Q ss_pred cccccccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeE
Q psy16310 519 TLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597 (1493)
Q Consensus 519 ~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~V 597 (1493)
.+.+.++.+..+.|...|..++... .+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 5 ~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~v 84 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 84 (172)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred CeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcE
Confidence 4455666777788999999988776 468999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 598 LVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
||||+++++|+|+|++++||+||+|.++..|+||+|||||.|..|.|++|+++.+
T Consensus 85 LvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 85 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp EEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred EEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 9999999999999999999999999999999999999999999999999998753
No 163
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.88 E-value=7.9e-23 Score=218.69 Aligned_cols=145 Identities=31% Similarity=0.508 Sum_probs=120.2
Q ss_pred cccccccccccccCchhhHHHHHHhhC--CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC
Q psy16310 517 TKTLTESKILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 594 (1493)
Q Consensus 517 ~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~ 594 (1493)
...+...+..+..+.|...|..++... ++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 17 ~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 17 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 96 (185)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC
Confidence 445666677778888999999999876 578999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 595 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 595 ~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
.+|||||+++++|+|+|++++||+||+|.++..|+||+|||||.|..|.|++|+++.+...+..+..
T Consensus 97 ~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 97 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp SSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHH
T ss_pred CeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998877766643
No 164
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=8.9e-23 Score=216.98 Aligned_cols=141 Identities=30% Similarity=0.526 Sum_probs=124.4
Q ss_pred cccccccccccCc-hhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCe
Q psy16310 519 TLTESKILCKHDE-KDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 596 (1493)
Q Consensus 519 ~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~ 596 (1493)
.+.+.++.+.... |...|..++... ++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 7 ~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~ 86 (175)
T 2rb4_A 7 NIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK 86 (175)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS
T ss_pred CceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 4555566666544 888888888765 57899999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhhccCCCCCCcEEEEecCC------CChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 597 ILLATDVAARGLDIPGIEHVIHYHVP------RTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 597 VLVaTdv~~rGlDip~v~~VI~yd~P------~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
|||||+++++|+|+|++++||+||+| .+...|+||+|||||.|..|.|++|+++.+...+..+
T Consensus 87 vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i 155 (175)
T 2rb4_A 87 VLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKI 155 (175)
T ss_dssp EEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHH
T ss_pred EEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999887665555
No 165
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.88 E-value=1.4e-22 Score=213.20 Aligned_cols=140 Identities=26% Similarity=0.448 Sum_probs=122.5
Q ss_pred cccccccccCc-hhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEE
Q psy16310 521 TESKILCKHDE-KDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598 (1493)
Q Consensus 521 ~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VL 598 (1493)
.+.++.+.... |...|..++... ++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 5 ~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 84 (165)
T 1fuk_A 5 KQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRIL 84 (165)
T ss_dssp EEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred EEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEE
Confidence 34445555555 888888888765 5789999999999999999999999999999999999999999999999999999
Q ss_pred EEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 599 VaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|||+++++|+|+|++++||+||+|.++..|+||+|||||.|..|.|++|+++.+...+..+.
T Consensus 85 v~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 146 (165)
T 1fuk_A 85 ISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 146 (165)
T ss_dssp EEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHH
T ss_pred EEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877666553
No 166
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=2.8e-22 Score=229.58 Aligned_cols=139 Identities=34% Similarity=0.506 Sum_probs=123.9
Q ss_pred cccccccccCchhhHHHHHHhh-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEE
Q psy16310 521 TESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599 (1493)
Q Consensus 521 ~~~~~~~~~~~k~~~l~~~l~~-~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLV 599 (1493)
....+.+..+.|...|..++.. .++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||
T Consensus 4 ~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLV 83 (300)
T 3i32_A 4 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLV 83 (300)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEE
Confidence 3455667778899999988865 468999999999999999999999999999999999999999999999999999999
Q ss_pred EechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 600 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 600 aTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
||+++++|+|+|+|++||+||+|.+...|+||+|||||+|++|.|++|+++.+...+..+
T Consensus 84 aT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~i 143 (300)
T 3i32_A 84 ATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL 143 (300)
T ss_dssp ECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHH
T ss_pred EechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887766555
No 167
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.77 E-value=1.5e-23 Score=221.66 Aligned_cols=148 Identities=30% Similarity=0.493 Sum_probs=133.2
Q ss_pred ceeeEEEecc-cchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCe
Q psy16310 1053 LTESKILCKH-DEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130 (1493)
Q Consensus 1053 ~~~~~~~~~~-~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~V 1130 (1493)
+.+.++.+.. ..|...+..++... ++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~v 83 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 83 (170)
Confidence 4455566666 67777777777654 568999999999999999999999999999999999999999999999999999
Q ss_pred EEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1131 LVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+++.+...+..+.+.++..+
T Consensus 84 LvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (170)
T 2yjt_D 84 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 153 (170)
Confidence 9999999999999999999999999999999999999999999999999999999888888877665543
No 168
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.74 E-value=1.3e-22 Score=214.38 Aligned_cols=138 Identities=32% Similarity=0.514 Sum_probs=125.1
Q ss_pred cccccc-CchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEe
Q psy16310 524 KILCKH-DEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601 (1493)
Q Consensus 524 ~~~~~~-~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaT 601 (1493)
+..+.. +.|...|..++... ++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 8 ~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 8 YYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 344444 66777777777664 4689999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
+++++|+|+|++++||+||+|.++..|+||+|||||.|..|.|++++++.+...+..+..
T Consensus 88 ~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 88 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 999999999999999999999999999999999999999999999999988777666643
No 169
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.83 E-value=3.2e-20 Score=232.66 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=67.6
Q ss_pred HHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEE--eehhhhccccCCC--
Q psy16310 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL--ATDVAARGLDIPG-- 1145 (1493)
Q Consensus 1070 ~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLV--aTdv~~~GiDip~-- 1145 (1493)
..++...++.+|||++|...++.++..|.. .. ...+|.. ..|..+++.|+.+. .||+ ||+.+++|||+|+
T Consensus 377 ~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~ 450 (540)
T 2vl7_A 377 KRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKE 450 (540)
T ss_dssp HHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC--------------
T ss_pred HHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCc
Confidence 334445688999999999999999988864 22 3345553 46889999999864 6777 8899999999997
Q ss_pred --ccEEEEecCCCC-h-----------------------------hHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1146 --IEHVIHYHVPRT-S-----------------------------EIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1146 --v~~VI~~d~p~s-~-----------------------------~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
+++||++++|.. + ..+.|.+||+-|....--++++++
T Consensus 451 ~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 451 NLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp -CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred ccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 899999999832 1 124588999999854333344443
No 170
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.81 E-value=2.1e-19 Score=225.23 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=68.6
Q ss_pred hHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEE--EechhhccCCCC
Q psy16310 534 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL--ATDVAARGLDIP 611 (1493)
Q Consensus 534 ~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLV--aTdv~~rGlDip 611 (1493)
..+..++...++++|||++|+...+.++..|.. .. ...+|.. ..|..+++.|+.|. .||+ ||..+++|||+|
T Consensus 374 ~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~ 447 (540)
T 2vl7_A 374 ILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFR 447 (540)
T ss_dssp HHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-----------
T ss_pred HHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecC
Confidence 345555566688999999999999999987764 22 2344443 46788999999865 6777 889999999999
Q ss_pred C----CcEEEEecCCCC-h-----------------------------HHHHHHHhccccCCCC-CeEEEEe
Q psy16310 612 G----IEHVIHYHVPRT-S-----------------------------EIYIHRSGRTARANNE-GLTVVLI 648 (1493)
Q Consensus 612 ~----v~~VI~yd~P~s-~-----------------------------~~yiQR~GRagR~g~~-G~~i~l~ 648 (1493)
+ +++||++++|.. + ..+.|.+||+-|.... |. ++++
T Consensus 448 ~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~-v~ll 518 (540)
T 2vl7_A 448 EKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK-IYLC 518 (540)
T ss_dssp ----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE-EEEE
T ss_pred CCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE-EEEE
Confidence 8 899999999822 1 2235899999997544 54 4444
No 171
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.81 E-value=2.2e-20 Score=206.41 Aligned_cols=175 Identities=17% Similarity=0.067 Sum_probs=118.5
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.+...|+|+|.++++.++ .++++++++|||+|||++|+++++..+....
T Consensus 29 ~~~~~l~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~------------------------------ 77 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPAL-EGKNIIICLPTGSGKTRVAVYIAKDHLDKKK------------------------------ 77 (216)
T ss_dssp SCCCCCCHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred cCCCCchHHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc------------------------------
Confidence 355689999999998554 6789999999999999999999987764321
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHH-HHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQ-VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q-~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~ 944 (1493)
....+.++||++||++|+.| +.+.+..+... ++++..++|+.........+...++|+|+||++|...+...
T Consensus 78 ------~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~ 150 (216)
T 3b6e_A 78 ------KASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNL 150 (216)
T ss_dssp ------HTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-
T ss_pred ------cccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhcc
Confidence 11235579999999999999 77888887654 67888888876544333333345799999999999988764
Q ss_pred cCc---cccccceeEEEecccchhccCCChhHHHHHH-HHh-c-------ccCCCCCceEEEEecc
Q psy16310 945 HFH---LTELYKINYLVIDETDRMIESGHFPELKNIL-DRV-T-------MTETSQPRQTFVFSAT 998 (1493)
Q Consensus 945 ~~~---~~~l~~l~~lVlDEah~ll~~~~~~~l~~il-~~l-~-------~~~~~~~~q~ll~SAT 998 (1493)
... ...+.++++|||||||++...+++..+...+ ... . .....+..+++++|||
T Consensus 151 ~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 151 ENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp ------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred CcccccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 310 1235678999999999998877766653322 111 0 0112256799999998
No 172
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.80 E-value=5.5e-20 Score=203.24 Aligned_cols=152 Identities=18% Similarity=0.079 Sum_probs=107.1
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.....|+++|.++++. +..++++++++|||+|||++|++++++.+....
T Consensus 29 ~~~~~l~~~Q~~~i~~-~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~------------------------------ 77 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQP-ALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK------------------------------ 77 (216)
T ss_dssp SCCCCCCHHHHHHHHH-HHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred cCCCCchHHHHHHHHH-HhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc------------------------------
Confidence 3455799999999985 456789999999999999999999987764321
Q ss_pred chhhhhcccCceEEEEEcccHHHHHH-HHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQ-VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Q-i~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~ 327 (1493)
....+.++||++||++|+.| +.+.+..+... ++++..++|+......+..+...++|+|+||+.|.+.+...
T Consensus 78 ------~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~ 150 (216)
T 3b6e_A 78 ------KASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNL 150 (216)
T ss_dssp ------HTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-
T ss_pred ------cccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhcc
Confidence 11234679999999999999 77788887654 68888888886654444444456799999999999988764
Q ss_pred Ccc---ccccccccEEEEecCchhhhcCChhhHH
Q psy16310 328 HFH---LTELYKINYLVIDETDRMIESGHFPELK 358 (1493)
Q Consensus 328 ~~~---~~~l~~i~~lViDEAh~ll~~~~~~~l~ 358 (1493)
... ...+.++++|||||||++.+.+++..+.
T Consensus 151 ~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 151 ENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp ------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred CcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 310 1235578999999999998777766553
No 173
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.77 E-value=1.5e-17 Score=209.33 Aligned_cols=133 Identities=17% Similarity=0.035 Sum_probs=102.9
Q ss_pred CCCCCcHHHHhhHHH---hhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 787 GFKTPTKIQSMVMPS---ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~---~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
|| .|+|.|.+++.. ++..|++++++||||+|||++|++|++..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------------------------- 46 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------------------------- 46 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH---------------------------------
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC---------------------------------
Confidence 44 689999997763 45678999999999999999999999851
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCC----------------------------
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS---------------------------- 915 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~---------------------------- 915 (1493)
+.+++|++||++|+.|+.+.+..+....++++..+.|+..
T Consensus 47 ------------~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~ 114 (551)
T 3crv_A 47 ------------KPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEV 114 (551)
T ss_dssp ------------CSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCC
T ss_pred ------------CCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccc
Confidence 2379999999999999999999988777888888877421
Q ss_pred -----HHHHH------------------HHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc
Q psy16310 916 -----TEKQL------------------RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 967 (1493)
Q Consensus 916 -----~~~~~------------------~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~ 967 (1493)
...+. +.....+||||+||+.|.+...+.... ......++||||||+|.+
T Consensus 115 g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~--~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 115 KTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFID--IDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSC--CCSTTEEEEETTGGGGGG
T ss_pred cccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcC--CCcCCeEEEEecccchHH
Confidence 11111 222346799999999999886554322 123567999999999877
No 174
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.77 E-value=7.4e-19 Score=196.40 Aligned_cols=173 Identities=17% Similarity=0.207 Sum_probs=124.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHH
Q psy16310 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 855 (1493)
Q Consensus 776 ~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1493)
++.+.+.+...+...++++|.++++ .+..|++++++||||||||++|.++++..+....
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~-~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-------------------- 105 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILE-AISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-------------------- 105 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT--------------------
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHH-HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC--------------------
Confidence 4444444444445567999999998 5668899999999999999999999887664321
Q ss_pred HHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhC-CCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECc
Q psy16310 856 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHILVATP 934 (1493)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP 934 (1493)
...+.++++++||++|+.|+++.+..... ..+..++.-..... ......++|+|+||
T Consensus 106 -----------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tp 163 (235)
T 3llm_A 106 -----------------RAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTV 163 (235)
T ss_dssp -----------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEH
T ss_pred -----------------CCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECH
Confidence 12345799999999999999988876432 33444443222110 01113578999999
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchh-ccCCCh-hHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRM-IESGHF-PELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~l-l~~~~~-~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
|+|.+++.. .+.++++|||||||++ ++.+|. ..+..++... ++.|+++||||++...
T Consensus 164 g~l~~~l~~------~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~------~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 164 GVLLRKLEA------GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY------PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHH------CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC------TTSEEEEEECSSCCHH
T ss_pred HHHHHHHHh------hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC------CCCeEEEEecCCCHHH
Confidence 999999875 2678999999999986 676665 3455555543 4689999999998665
No 175
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=191.22 Aligned_cols=173 Identities=17% Similarity=0.207 Sum_probs=122.0
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHH
Q psy16310 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 238 (1493)
Q Consensus 159 ~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1493)
++.+.+.+.......++++|.++++ .+..|++++++||||||||.++.++++..+....
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~-~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-------------------- 105 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILE-AISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-------------------- 105 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT--------------------
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHH-HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC--------------------
Confidence 4444444444445568999999998 6778899999999999999999999887664311
Q ss_pred HHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC-CCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCc
Q psy16310 239 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHILVATP 317 (1493)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~-~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP 317 (1493)
...+.++++++||++|+.|+.+.+..... ..+..++.-..... .....+++|+||||
T Consensus 106 -----------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tp 163 (235)
T 3llm_A 106 -----------------RAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTV 163 (235)
T ss_dssp -----------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEH
T ss_pred -----------------CCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECH
Confidence 12345799999999999999888765432 33344433222110 00113468999999
Q ss_pred HHHHHHHHcCCccccccccccEEEEecCchh-hhcCCh-hhHHHHHHhhccccCCCccccccccCCcchhhhhhhhcccc
Q psy16310 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRM-IESGHF-PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395 (1493)
Q Consensus 318 ~~L~~~l~~~~~~~~~l~~i~~lViDEAh~l-l~~~~~-~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1493)
|+|.+++.. .+.++++|||||||++ +++++. ..+..++...
T Consensus 164 g~l~~~l~~------~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~------------------------------- 206 (235)
T 3llm_A 164 GVLLRKLEA------GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY------------------------------- 206 (235)
T ss_dssp HHHHHHHHH------CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHh------hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-------------------------------
Confidence 999999875 2568999999999986 666665 3444444322
Q ss_pred CCCCCceEEEEeeccchhh
Q psy16310 396 ETSQPRQTFVFSATLTHSL 414 (1493)
Q Consensus 396 ~~~~~~q~il~SATl~~~~ 414 (1493)
+..|+++||||++...
T Consensus 207 ---~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 207 ---PEVRIVLMSATIDTSM 222 (235)
T ss_dssp ---TTSEEEEEECSSCCHH
T ss_pred ---CCCeEEEEecCCCHHH
Confidence 2469999999998654
No 176
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.75 E-value=4.9e-17 Score=204.74 Aligned_cols=133 Identities=17% Similarity=0.052 Sum_probs=102.7
Q ss_pred CCCCChHHHHhhhh---hhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 170 GFKTPTKIQSMVMP---SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~---~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
|| .|+|+|.+++. .++..++++++.||||+|||++|++|++.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---------------------------------- 45 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---------------------------------- 45 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----------------------------------
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----------------------------------
Confidence 45 69999999765 34567899999999999999999999984
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCC----------------------------
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS---------------------------- 298 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~---------------------------- 298 (1493)
.+.+++|++||++|+.|+.+.+..+....++++..+.|...
T Consensus 46 -----------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~ 114 (551)
T 3crv_A 46 -----------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEV 114 (551)
T ss_dssp -----------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCC
T ss_pred -----------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccc
Confidence 12479999999999999999999988777888888877321
Q ss_pred -----HHHHH------------------HHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh
Q psy16310 299 -----TEKQL------------------RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 350 (1493)
Q Consensus 299 -----~~~~~------------------~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~ 350 (1493)
....+ ......++|||+|++.|.+.+....... .....+|||||||+|.+
T Consensus 115 g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~--~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 115 KTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDI--DLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCC--CSTTEEEEETTGGGGGG
T ss_pred cccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCC--CcCCeEEEEecccchHH
Confidence 11111 2223467999999999998765443221 23678999999999987
No 177
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.73 E-value=2.1e-18 Score=198.69 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=119.6
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..|+|+|.++++.++.+ .+.++++|||+|||+++++++...+..
T Consensus 112 ~~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------------------- 155 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLEN----------------------------------- 155 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHH-----------------------------------
T ss_pred cCccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHHHc-----------------------------------
Confidence 38999999999966644 678889999999999998887765421
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcc
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~ 948 (1493)
...++|||+||++|+.|+++.+.+++...+..+..++||..... ......+|+|+||+++.... .
T Consensus 156 ------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~ 220 (282)
T 1rif_A 156 ------YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP------K 220 (282)
T ss_dssp ------CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC------G
T ss_pred ------CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH------H
Confidence 12369999999999999999999998777778888888765332 12245799999999874321 1
Q ss_pred ccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 949 ~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+.++++||+||||++.. ..+..++..+ ....+++++|||+++..
T Consensus 221 ~~~~~~~~vIiDEaH~~~~----~~~~~il~~~-----~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 221 EWFSQFGMMMNDECHLATG----KSISSIISGL-----NNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp GGGGGEEEEEEETGGGCCH----HHHHHHTTTC-----TTCCEEEEECSSCCTTS
T ss_pred HHHhhCCEEEEECCccCCc----ccHHHHHHHh-----hcCCeEEEEeCCCCCcc
Confidence 2356789999999999874 3566666655 24689999999998653
No 178
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.73 E-value=5.9e-18 Score=194.92 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=117.3
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+++|.++++.++. +.+.++++|||||||++|++++...+..
T Consensus 113 ~l~~~Q~~ai~~~l~-~~~~ll~~~tGsGKT~~~~~~~~~~~~~------------------------------------ 155 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLEN------------------------------------ 155 (282)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEECCCTTSCHHHHHHHHHHHHHHH------------------------------------
T ss_pred CccHHHHHHHHHHHh-cCCeEEEcCCCCCcHHHHHHHHHHHHHc------------------------------------
Confidence 799999999986554 4678889999999999998887765521
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
.+.++|||+||++|+.|+.+.+..++...+..+..++|+..... ......+|+|+||+.|.... . .
T Consensus 156 -----~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~-----~-~ 221 (282)
T 1rif_A 156 -----YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP-----K-E 221 (282)
T ss_dssp -----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC-----G-G
T ss_pred -----CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH-----H-H
Confidence 12369999999999999999999987766778888888765432 22345799999999874321 1 2
Q ss_pred ccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccch
Q psy16310 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~ 412 (1493)
.+.++++||+||||++.. +.+..++..+ ....++++||||+++
T Consensus 222 ~~~~~~~vIiDEaH~~~~----~~~~~il~~~---------------------------------~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 222 WFSQFGMMMNDECHLATG----KSISSIISGL---------------------------------NNCMFKFGLSGSLRD 264 (282)
T ss_dssp GGGGEEEEEEETGGGCCH----HHHHHHTTTC---------------------------------TTCCEEEEECSSCCT
T ss_pred HHhhCCEEEEECCccCCc----ccHHHHHHHh---------------------------------hcCCeEEEEeCCCCC
Confidence 355789999999999964 3455555433 234799999999986
Q ss_pred hhh
Q psy16310 413 SLK 415 (1493)
Q Consensus 413 ~~~ 415 (1493)
...
T Consensus 265 ~~~ 267 (282)
T 1rif_A 265 GKA 267 (282)
T ss_dssp TST
T ss_pred cch
Confidence 543
No 179
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.65 E-value=2.2e-15 Score=190.63 Aligned_cols=108 Identities=20% Similarity=0.357 Sum_probs=72.8
Q ss_pred HHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeeh--hhhccccCCC--c
Q psy16310 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD--VAARGLDIPG--I 1146 (1493)
Q Consensus 1071 ~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTd--v~~~GiDip~--v 1146 (1493)
.++...+|.++||++|....+.++..|...+.. ...+|+...|..++++|+ ++..||+||. .+++|||+|+ .
T Consensus 442 ~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l 517 (620)
T 4a15_A 442 DIILKVKKNTIVYFPSYSLMDRVENRVSFEHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNEL 517 (620)
T ss_dssp HHHHHHCSCEEEEESCHHHHHHHTSSCCSCCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCC
T ss_pred HHHHhCCCCEEEEeCCHHHHHHHHHHHHhcchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCce
Confidence 334455899999999999999998887622222 445566678999999999 8899999985 9999999986 6
Q ss_pred cEEEEecCCCC---h--------------------------hHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1147 EHVIHYHVPRT---S--------------------------EIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1147 ~~VI~~d~p~s---~--------------------------~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
.+||...+|-. + ....|-+||+-|.-..--++++++
T Consensus 518 ~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 518 EMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp CEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 78999887732 1 112588999999755433444443
No 180
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.64 E-value=7e-16 Score=171.82 Aligned_cols=139 Identities=19% Similarity=0.092 Sum_probs=107.1
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..|+|+|.++++.++ .+.++++++|||+|||++++.++...
T Consensus 92 ~~l~~~Q~~ai~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~-------------------------------------- 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL-------------------------------------- 132 (237)
T ss_dssp CCCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHHHS--------------------------------------
T ss_pred CCcCHHHHHHHHHHH-hCCCEEEEeCCCCCHHHHHHHHHHHc--------------------------------------
Confidence 589999999998544 56789999999999999988876531
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcE-EEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCc
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~-v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~ 947 (1493)
+.++||++||++|+.|+.+.+..+ ++. +..+.|+.. ...+|+|+||+.+...+..
T Consensus 133 -------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---- 188 (237)
T 2fz4_A 133 -------STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---- 188 (237)
T ss_dssp -------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----
T ss_pred -------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----
Confidence 235999999999999999998873 577 777777653 3569999999998765542
Q ss_pred cccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 948 ~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
....+++|||||||++....+ ..++..+ ...+++++|||+++.
T Consensus 189 --~~~~~~llIiDEaH~l~~~~~----~~i~~~~------~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 189 --LGNRFMLLIFDEVHHLPAESY----VQIAQMS------IAPFRLGLTATFERE 231 (237)
T ss_dssp --HTTTCSEEEEECSSCCCTTTH----HHHHHTC------CCSEEEEEEESCC--
T ss_pred --hcccCCEEEEECCccCCChHH----HHHHHhc------cCCEEEEEecCCCCC
Confidence 123579999999999876543 4455544 357899999999854
No 181
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.60 E-value=4.8e-15 Score=165.06 Aligned_cols=116 Identities=22% Similarity=0.131 Sum_probs=91.7
Q ss_pred CCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchh
Q psy16310 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1493)
..|+++|.++++. +..++++++++|||+|||++++.++...
T Consensus 92 ~~l~~~Q~~ai~~-~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------------------------------------- 132 (237)
T 2fz4_A 92 ISLRDYQEKALER-WLVDKRGCIVLPTGSGKTHVAMAAINEL-------------------------------------- 132 (237)
T ss_dssp CCCCHHHHHHHHH-HTTTSEEEEEESSSTTHHHHHHHHHHHS--------------------------------------
T ss_pred CCcCHHHHHHHHH-HHhCCCEEEEeCCCCCHHHHHHHHHHHc--------------------------------------
Confidence 3799999999985 4466789999999999999998876521
Q ss_pred hhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeE-EEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcc
Q psy16310 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330 (1493)
Q Consensus 252 ~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~-v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~ 330 (1493)
+.++||++||++|+.|+.+.+..+ ++. +..+.|+.. ...+|+|+||+.+...+..
T Consensus 133 -------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---- 188 (237)
T 2fz4_A 133 -------STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---- 188 (237)
T ss_dssp -------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----
T ss_pred -------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----
Confidence 235999999999999999998873 567 777777753 2469999999998765542
Q ss_pred ccccccccEEEEecCchhhhcC
Q psy16310 331 LTELYKINYLVIDETDRMIESG 352 (1493)
Q Consensus 331 ~~~l~~i~~lViDEAh~ll~~~ 352 (1493)
+ ..++++|||||||++....
T Consensus 189 ~--~~~~~llIiDEaH~l~~~~ 208 (237)
T 2fz4_A 189 L--GNRFMLLIFDEVHHLPAES 208 (237)
T ss_dssp H--TTTCSEEEEECSSCCCTTT
T ss_pred h--cccCCEEEEECCccCCChH
Confidence 1 1257999999999986543
No 182
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.59 E-value=9e-15 Score=185.02 Aligned_cols=110 Identities=20% Similarity=0.327 Sum_probs=73.9
Q ss_pred HHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEec--hhhccCCCCC
Q psy16310 535 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD--VAARGLDIPG 612 (1493)
Q Consensus 535 ~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTd--v~~rGlDip~ 612 (1493)
.+..++...+++++||++|+...+.++..|.. .... ...+++..++..+++.|+ +...||+||. .+.+|||+|+
T Consensus 439 ~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g 514 (620)
T 4a15_A 439 VIEDIILKVKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPG 514 (620)
T ss_dssp HHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------
T ss_pred HHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCC
Confidence 34455555688999999999999999887762 2212 444566678999999999 8899999986 8999999987
Q ss_pred --CcEEEEecCCCC-------------------h----------HHHHHHHhccccCCCCCeEEEEe
Q psy16310 613 --IEHVIHYHVPRT-------------------S----------EIYIHRSGRTARANNEGLTVVLI 648 (1493)
Q Consensus 613 --v~~VI~yd~P~s-------------------~----------~~yiQR~GRagR~g~~G~~i~l~ 648 (1493)
+..||...+|.- . ....|-+||.=|....--+++|+
T Consensus 515 ~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 515 NELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred CceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEE
Confidence 779999888721 1 11259999999976543234444
No 183
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.59 E-value=2.3e-15 Score=170.45 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=97.7
Q ss_pred ccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhc-CCCccccccCCCHHHHHHHHHHHhcC-CCe-EEEEe
Q psy16310 528 KHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML-KCSPLPLHASMNQRQRLKNLDRFRDQ-NNS-ILLAT 601 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~-~~~~~~lhg~~~~~~R~~vl~~Fr~g-~~~-VLVaT 601 (1493)
..+.|...|..++.. .+.++||||++...+..+...|... |+.+..+||++++.+|..+++.|++| ..+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 456788888777755 4689999999999999999999874 99999999999999999999999999 677 79999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE--EEEecCC
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--VVLIESD 651 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~--i~l~~~~ 651 (1493)
+++++|||++++++||+||+|+|+..|+||+||++|.|..+.+ +.|++.+
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999987654 5566654
No 184
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.58 E-value=2.6e-15 Score=169.98 Aligned_cols=125 Identities=14% Similarity=0.194 Sum_probs=97.1
Q ss_pred cccchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhc-CCCccccccCCCHHHHHHHHHHHhcC-CCC-eEEee
Q psy16310 1061 KHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML-KCSPLPLHASMNQRQRLKNLDRFRDQ-NNS-ILLAT 1134 (1493)
Q Consensus 1061 ~~~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~m~~~~R~~~~~~F~~g-~~~-VLVaT 1134 (1493)
....|...+..++.. .+.++||||+++..++.+...|... |+.+..+||++++.+|..++++|+++ ... +|+||
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 345677777777654 4789999999999999999999884 99999999999999999999999998 677 78999
Q ss_pred hhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeE--EEEecCCC
Q psy16310 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--LVLIESDE 1185 (1493)
Q Consensus 1135 dv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i~l~~~~e 1185 (1493)
+++++|+|++++++||+||+|.++..|+||+||++|.|+.+.+ +.|+..+.
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999999999999999999999999999999999987765 44565543
No 185
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.27 E-value=7.8e-07 Score=112.47 Aligned_cols=145 Identities=21% Similarity=0.294 Sum_probs=86.6
Q ss_pred cHHHHhhHHHhhccCCcEEEEccCCCcch--hHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 792 TKIQSMVMPSALLARKDIVGAAETGSGKT--LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 792 t~iQ~~~i~~~l~~~~dvlv~apTGsGKT--la~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
+++|..+++.++ .++.++++|++||||| ++++++++..+.
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~------------------------------------- 192 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMA------------------------------------- 192 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTC-------------------------------------
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------------------------------------
Confidence 789999998666 6689999999999999 667777765431
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc-EEEECcHHHHHHHHhCcCcc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH-ILVATPGRLWEFIQLGHFHL 948 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~-IlV~TP~rl~~~l~~~~~~~ 948 (1493)
...+.++++++||..+|.++.+.+...+..+++..... .+... + ....+ ++-.+|+.. . +.....
T Consensus 193 ---~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~~-- 258 (608)
T 1w36_D 193 ---DGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHAG-- 258 (608)
T ss_dssp ---SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC-CSCSC--C----CBTTTSCC-------------CTT--
T ss_pred ---hcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH-hccch--h----hhhhHhhhccCCCch-H-HHhccC--
Confidence 12345799999999999999888776544333221100 00000 0 00111 222233321 1 111111
Q ss_pred ccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecc
Q psy16310 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998 (1493)
Q Consensus 949 ~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SAT 998 (1493)
....+++||||||+ |++ ...+..++..+ +...|++++.-.
T Consensus 259 -~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l-----~~~~~liLvGD~ 298 (608)
T 1w36_D 259 -NPLHLDVLVVDEAS-MID---LPMMSRLIDAL-----PDHARVIFLGDR 298 (608)
T ss_dssp -SCCSCSEEEECSGG-GCB---HHHHHHHHHTC-----CTTCEEEEEECT
T ss_pred -CCCCCCEEEEechh-hCC---HHHHHHHHHhC-----CCCCEEEEEcch
Confidence 11267899999999 655 35667777766 356888888644
No 186
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.15 E-value=3.3e-06 Score=106.71 Aligned_cols=68 Identities=24% Similarity=0.228 Sum_probs=52.9
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchh--HHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKT--LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKT--l~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
+++|..+++.++ .+++++++|++||||| ++++++++..+.
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~------------------------------------- 192 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMA------------------------------------- 192 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTC-------------------------------------
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------------------------------------
Confidence 789999998655 6789999999999999 567777664331
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAG 283 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~ 283 (1493)
...+.++++++||..+|.++.+.+....
T Consensus 193 ---~~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 193 ---DGERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp ---SSCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred ---hcCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 0124579999999999999988776543
No 187
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.94 E-value=0.0011 Score=84.68 Aligned_cols=68 Identities=21% Similarity=0.117 Sum_probs=51.1
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+.+-|.+|+..++....=.||+||.|||||.+.+-.+. ++..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~-~l~~------------------------------------ 231 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIIL-QAVK------------------------------------ 231 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHH-HHHH------------------------------------
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHH-HHHh------------------------------------
Confidence 478999999987775444578999999999987443333 3321
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
++.++|+++||..-|.++...+...
T Consensus 232 -----~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 232 -----QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp -----TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred -----CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 2346999999999999998887654
No 188
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.85 E-value=0.0023 Score=78.17 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=49.7
Q ss_pred HHCCCCCCcHHHHhhHHHhhcc----CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHH
Q psy16310 784 YQKGFKTPTKIQSMVMPSALLA----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 859 (1493)
Q Consensus 784 ~~~g~~~pt~iQ~~~i~~~l~~----~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (1493)
..+.|..+++-|.+++..++.. ...+++.|+.|||||.+. ..++..+...
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~------------------------- 72 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST------------------------- 72 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------------------------
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------------------------
Confidence 4467889999999999754432 338999999999999653 3344444221
Q ss_pred HHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHH
Q psy16310 860 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896 (1493)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~ 896 (1493)
....+++++||...|..+...+
T Consensus 73 ---------------~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 73 ---------------GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp ---------------TCCCEEEEESSHHHHHHHHHHH
T ss_pred ---------------CCceEEEecCcHHHHHHHHhhh
Confidence 1135899999999887665544
No 189
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.79 E-value=0.0043 Score=78.67 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=52.4
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
+..+++.|.+++..++ .+.-+++.||+|||||.+..- ++.++..
T Consensus 178 ~~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~~-~i~~l~~---------------------------------- 221 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLAR---------------------------------- 221 (624)
T ss_dssp SCCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHHH-HHHHHHT----------------------------------
T ss_pred cCCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHHH-HHHHHHH----------------------------------
Confidence 4568999999998555 456789999999999987433 3333321
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
..+.++|+++||...|.++...+...
T Consensus 222 ------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 222 ------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp ------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred ------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 12346999999999999998887654
No 190
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.75 E-value=0.0016 Score=83.13 Aligned_cols=68 Identities=21% Similarity=0.122 Sum_probs=51.2
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.+.+-|.+|+..++....=.||+||.|||||.+.+-.+.+ ++.
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~-l~~------------------------------------ 231 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQ-AVK------------------------------------ 231 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHH-HHH------------------------------------
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHH-HHh------------------------------------
Confidence 4689999999877755445789999999999874433333 321
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHh
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDA 899 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~ 899 (1493)
.+.++|+++||..=|.++.+.+...
T Consensus 232 -----~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 232 -----QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp -----TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred -----CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 2346999999999999998888654
No 191
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.72 E-value=0.0044 Score=78.58 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=52.5
Q ss_pred CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 788 ~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
+..+++.|..|+..++ .+.-++++||+|||||.+..- ++..+..
T Consensus 178 ~~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~~-~i~~l~~---------------------------------- 221 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLAR---------------------------------- 221 (624)
T ss_dssp SCCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHHH-HHHHHHT----------------------------------
T ss_pred cCCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHHH-HHHHHHH----------------------------------
Confidence 4567999999998665 455789999999999987433 3333321
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHh
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDA 899 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~ 899 (1493)
..+.++|+++||..-|.++.+.+...
T Consensus 222 ------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 222 ------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp ------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred ------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 13346999999999999999888654
No 192
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.62 E-value=0.0055 Score=76.43 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=46.9
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+++.|.+++..++ .+..+++.|+.|||||.+... ++..+.
T Consensus 189 ~L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i~~-l~~~l~------------------------------------- 229 (574)
T 3e1s_A 189 GLSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTTKA-VADLAE------------------------------------- 229 (574)
T ss_dssp TCCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHHHH-HHHHHH-------------------------------------
T ss_pred CCCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHHHH-HHHHHH-------------------------------------
Confidence 58899999997544 667999999999999986322 333221
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHH
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHI 279 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~ 279 (1493)
..+.++++++||...+..+.+.+
T Consensus 230 ----~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 230 ----SLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp ----HTTCCEEEEESSHHHHHHHHHHH
T ss_pred ----hcCCeEEEecCcHHHHHHhHhhh
Confidence 12356999999999998776543
No 193
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.59 E-value=0.005 Score=75.13 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=49.7
Q ss_pred HHCCCCCChHHHHhhhhhhhcc----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHH
Q psy16310 167 YQKGFKTPTKIQSMVMPSALLA----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 242 (1493)
Q Consensus 167 ~~~g~~~pt~iQ~~~i~~~l~~----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1493)
.-+.|..+++-|.+++..++.. ...+++.|+.|||||.+. ..++..+...
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~------------------------- 72 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST------------------------- 72 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------------------------
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------------------------
Confidence 3467888999999999754322 348999999999999764 3344444321
Q ss_pred HHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHH
Q psy16310 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279 (1493)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~ 279 (1493)
....+++++||...|..+...+
T Consensus 73 ---------------~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 73 ---------------GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp ---------------TCCCEEEEESSHHHHHHHHHHH
T ss_pred ---------------CCceEEEecCcHHHHHHHHhhh
Confidence 1135899999999887766544
No 194
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.58 E-value=0.0032 Score=78.57 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=46.4
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.+++.|..++..++ .+..+++.|+.|||||.+. ..++..+.
T Consensus 189 ~L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i-~~l~~~l~------------------------------------- 229 (574)
T 3e1s_A 189 GLSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTT-KAVADLAE------------------------------------- 229 (574)
T ss_dssp TCCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHH-HHHHHHHH-------------------------------------
T ss_pred CCCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHH-HHHHHHHH-------------------------------------
Confidence 57899999997554 5678999999999999763 22333321
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHH
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHI 896 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~ 896 (1493)
..+.++++++||...+..+.+.+
T Consensus 230 ----~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 230 ----SLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp ----HTTCCEEEEESSHHHHHHHHHHH
T ss_pred ----hcCCeEEEecCcHHHHHHhHhhh
Confidence 12346899999999988766543
No 195
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0075 Score=78.15 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=52.2
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
+..+++.|.+++..++ .+.-++|.||.|||||.+..- ++.++...
T Consensus 358 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~~-~i~~l~~~--------------------------------- 402 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLSKI--------------------------------- 402 (802)
T ss_dssp SCCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHHHH-HHHHHHHH---------------------------------
T ss_pred cccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHH-HHHHHHhC---------------------------------
Confidence 4567899999998555 455689999999999987433 33333210
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
.+.++|+++||...|.++...+...
T Consensus 403 -------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 403 -------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp -------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred -------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 1246999999999999999888765
No 196
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.0061 Score=79.03 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=53.3
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
.+..+++.|..|+..++ .+.-++++||.|||||.+..- ++..+...
T Consensus 357 ~~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-------------------------------- 402 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-------------------------------- 402 (802)
T ss_dssp TSCCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHHHH-HHHHHHHH--------------------------------
T ss_pred ccccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHH-HHHHHHhC--------------------------------
Confidence 34578999999998655 455689999999999987433 33333210
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
.+.++|+++||..-|.++.+.+...+
T Consensus 403 --------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 403 --------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp --------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred --------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 22469999999999999999887753
No 197
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.29 E-value=0.0099 Score=76.94 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=52.3
Q ss_pred CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 788 ~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
...+++.|..|+..++ .+.-++++||.|||||.+.. .++..+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti~-~~i~~l~~---------------------------------- 397 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSA-TIVYHLAR---------------------------------- 397 (800)
T ss_dssp SCCCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHHH-HHHHHHHT----------------------------------
T ss_pred ccCCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHHH-HHHHHHHH----------------------------------
Confidence 4567999999998665 44578999999999998743 33433321
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHh
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDA 899 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~ 899 (1493)
..+.++++++||..-|.++.+.+...
T Consensus 398 ------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 398 ------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp ------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 12346999999999999998887654
No 198
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.27 E-value=0.011 Score=76.58 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=51.9
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
...+++.|.+++..++ .+.-+++.||.|||||.+.. .++..+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti~-~~i~~l~~---------------------------------- 397 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSA-TIVYHLAR---------------------------------- 397 (800)
T ss_dssp SCCCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHHH-HHHHHHHT----------------------------------
T ss_pred ccCCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHHH-HHHHHHHH----------------------------------
Confidence 3457899999998555 45578999999999998743 33333321
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
..+.++++++||...|.++.+.+...
T Consensus 398 ------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 398 ------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp ------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 12346999999999999998887654
No 199
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=95.63 E-value=0.036 Score=62.50 Aligned_cols=123 Identities=15% Similarity=0.053 Sum_probs=87.9
Q ss_pred ccCchhhHHHHHH---hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechh
Q psy16310 528 KHDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604 (1493)
Q Consensus 528 ~~~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~ 604 (1493)
..+.|+.+|..+| ...+.+++||++......-+..+|...++....+.|.....++. -..+...|.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCC
Confidence 3567777776665 44577999999999999999999999999999999985543322 124556666667766
Q ss_pred hccCC-----CCCCcEEEEecCCCChHH-HHHHHhccccCC----CCCeEEEEecCCcchh
Q psy16310 605 ARGLD-----IPGIEHVIHYHVPRTSEI-YIHRSGRTARAN----NEGLTVVLIESDEIPL 655 (1493)
Q Consensus 605 ~rGlD-----ip~v~~VI~yd~P~s~~~-yiQR~GRagR~g----~~G~~i~l~~~~e~~~ 655 (1493)
.-|++ ....+.||.||.-.|+.. .+|.+-|+.|.| +.-.+|.|++..-+.+
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 66676 678999999999999887 488887777763 3557788887765544
No 200
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.90 E-value=0.1 Score=60.98 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=53.8
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.++|+|...+. .+...+-+++..+-+.|||.+....++..++.
T Consensus 163 ~L~p~Qk~il~-~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~------------------------------------ 205 (385)
T 2o0j_A 163 QLRDYQRDMLK-IMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF------------------------------------ 205 (385)
T ss_dssp CCCHHHHHHHH-HHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS------------------------------------
T ss_pred CCCHHHHHHHH-hhccCcEEEEEEcCcCChhHHHHHHHHHHHHh------------------------------------
Confidence 68999999986 44344668999999999998876655543321
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhC
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGK 901 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~ 901 (1493)
.++..+++++||+.-|..+.+.++.+..
T Consensus 206 ----~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 206 ----NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp ----SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ----CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 2345799999999999988888777654
No 201
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=94.51 E-value=0.12 Score=58.10 Aligned_cols=123 Identities=14% Similarity=0.046 Sum_probs=84.2
Q ss_pred ccchhhHHHHHH---HhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhh
Q psy16310 1062 HDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138 (1493)
Q Consensus 1062 ~~~k~~~l~~~l---~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~ 1138 (1493)
.+.|...|-.++ ...+.+++||++.....+-+..+|...++....+.|.....++ + -.++...|.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECCCC
Confidence 344555544444 4557799999999999999999999999988888888554322 1 1244555656677666
Q ss_pred cccc-----CCCccEEEEecCCCChhH-HHHHHhccCCCC----CCCeEEEEecCCCHHHH
Q psy16310 1139 RGLD-----IPGIEHVIHYHVPRTSEI-YIHRSGRTARAN----NEGLTLVLIESDEIPLY 1189 (1493)
Q Consensus 1139 ~GiD-----ip~v~~VI~~d~p~s~~~-yiqr~GR~gR~g----~~G~~i~l~~~~e~~~~ 1189 (1493)
-|++ ....+.||.||.-.++.. .+|.+-|+.|.| +.-..+-|++..-++..
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~ 242 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHC 242 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHH
Confidence 6676 678999999999988877 588887777763 35567778877766543
No 202
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.16 E-value=0.22 Score=58.27 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=52.7
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+|+|...+. .+...+-+++..+-+.|||.+.+..++..+..
T Consensus 163 ~L~p~Qk~il~-~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~------------------------------------ 205 (385)
T 2o0j_A 163 QLRDYQRDMLK-IMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF------------------------------------ 205 (385)
T ss_dssp CCCHHHHHHHH-HHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS------------------------------------
T ss_pred CCCHHHHHHHH-hhccCcEEEEEEcCcCChhHHHHHHHHHHHHh------------------------------------
Confidence 68999999986 44445668999999999999876666543321
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAG 283 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~ 283 (1493)
..+..+++++||+.-|..+.+.+..+.
T Consensus 206 ----~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 206 ----NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp ----SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ----CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 134569999999999988877766544
No 203
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.75 E-value=0.14 Score=53.31 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCcchhHhh
Q psy16310 805 ARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~ 824 (1493)
.|+.+++.||+|+|||..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47889999999999997643
No 204
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.01 E-value=0.19 Score=63.13 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=55.2
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+|+|...+. .+...+.+++..+-|+|||.+.+..++..+..
T Consensus 163 ~l~p~Q~~i~~-~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~------------------------------------ 205 (592)
T 3cpe_A 163 QLRDYQRDMLK-IMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF------------------------------------ 205 (592)
T ss_dssp CCCHHHHHHHH-HHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT------------------------------------
T ss_pred cCCHHHHHHHH-hhccccEEEEEEcCccChHHHHHHHHHHHHHh------------------------------------
Confidence 58999999886 44456779999999999999876555544422
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYT 286 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~ 286 (1493)
.++..+++++||++.|..+...+..+....
T Consensus 206 ----~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 206 ----NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp ----SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred ----CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 123469999999999999888887765443
No 205
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=92.91 E-value=0.13 Score=65.59 Aligned_cols=71 Identities=18% Similarity=0.126 Sum_probs=52.8
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..+++-|.+++. . .+..++|.|+.|||||.+.+--+...+...
T Consensus 8 ~~Ln~~Q~~av~-~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~---------------------------------- 50 (647)
T 3lfu_A 8 DSLNDKQREAVA-A--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE---------------------------------- 50 (647)
T ss_dssp TTCCHHHHHHHT-C--CSSCEEEEECTTSCHHHHHHHHHHHHHHTS----------------------------------
T ss_pred hcCCHHHHHHHh-C--CCCCEEEEECCCCCHHHHHHHHHHHHHHhC----------------------------------
Confidence 467999999995 2 345899999999999987544444333211
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
..++.++|++++|+..+.++.+.+..+.
T Consensus 51 ----~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 51 ----NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp ----CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred ----CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 1223469999999999999999998864
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.89 E-value=0.32 Score=50.51 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=17.2
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.++.++++||+|+|||..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47889999999999998743
No 207
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=92.51 E-value=0.2 Score=63.93 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=73.1
Q ss_pred CCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchh
Q psy16310 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1493)
..+++-|.+++. . .+..++|.|+.|||||.+.+--+.+.+...
T Consensus 8 ~~Ln~~Q~~av~-~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~---------------------------------- 50 (647)
T 3lfu_A 8 DSLNDKQREAVA-A--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE---------------------------------- 50 (647)
T ss_dssp TTCCHHHHHHHT-C--CSSCEEEEECTTSCHHHHHHHHHHHHHHTS----------------------------------
T ss_pred hcCCHHHHHHHh-C--CCCCEEEEECCCCCHHHHHHHHHHHHHHhC----------------------------------
Confidence 468999999996 3 346899999999999998544443333210
Q ss_pred hhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccc
Q psy16310 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331 (1493)
Q Consensus 252 ~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~ 331 (1493)
+....++|++++|+..+.++.+.+..+.... ...+-|+|...+...+-......
T Consensus 51 ----~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~----------------------~~~~~v~Tfhs~~~~il~~~~~~ 104 (647)
T 3lfu_A 51 ----NCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS----------------------QGGMWVGTFHGLAHRLLRAHHMD 104 (647)
T ss_dssp ----CCCGGGEEEEESSHHHHHHHHHHHHHHHCSC----------------------CTTCEEEEHHHHHHHHHHHTTGG
T ss_pred ----CCChhhEEEEeccHHHHHHHHHHHHHHhccc----------------------cCCcEEEcHHHHHHHHHHHHHHH
Confidence 1123469999999999999999998764210 12678899888865443322221
Q ss_pred cccccccEEEEecCch
Q psy16310 332 TELYKINYLVIDETDR 347 (1493)
Q Consensus 332 ~~l~~i~~lViDEAh~ 347 (1493)
..+ .-.+-|+|+.+.
T Consensus 105 ~~~-~~~~~i~~~~~~ 119 (647)
T 3lfu_A 105 ANL-PQDFQILDSEDQ 119 (647)
T ss_dssp GTC-CTTCEEECHHHH
T ss_pred hCC-CCCCEEeCHHHH
Confidence 111 124567787664
No 208
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.72 E-value=0.88 Score=51.66 Aligned_cols=19 Identities=16% Similarity=-0.094 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
.+.++++.||+|+|||.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999974
No 209
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.62 E-value=0.15 Score=60.25 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=17.0
Q ss_pred EEEEcccHHHHHHHHHHHHH
Q psy16310 262 ALILAPTRELAIQVQNHILD 281 (1493)
Q Consensus 262 aLiL~PTreLa~Qi~~~~~~ 281 (1493)
.+|++||++++..+.+.+..
T Consensus 187 ~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 187 DLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp CEEEESCHHHHHHHHHHHTT
T ss_pred eEEEeCCHHHHHHHHHHhhh
Confidence 69999999999988877743
No 210
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.49 E-value=0.72 Score=51.43 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=15.1
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999764
No 211
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.10 E-value=0.4 Score=56.68 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=16.9
Q ss_pred EEEEcccHHHHHHHHHHHHH
Q psy16310 879 ALILAPTRELAIQVQNHILD 898 (1493)
Q Consensus 879 ~lil~PTreLa~Q~~~~~~~ 898 (1493)
.+|++||++++..+.+.+..
T Consensus 187 ~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 187 DLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp CEEEESCHHHHHHHHHHHTT
T ss_pred eEEEeCCHHHHHHHHHHhhh
Confidence 69999999999888877643
No 212
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.00 E-value=0.27 Score=51.57 Aligned_cols=21 Identities=19% Similarity=-0.167 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCchhHHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~l 208 (1493)
.|+=.++++|.|||||.+.+-
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHH
Confidence 355678899999999987443
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.66 E-value=0.18 Score=50.64 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.+..+++.||+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999753
No 214
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.53 E-value=1.4 Score=49.89 Aligned_cols=43 Identities=5% Similarity=0.125 Sum_probs=25.6
Q ss_pred ceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccc
Q psy16310 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~ 1000 (1493)
..-+|||||+|++.+ ...+..++.... ......-+++.++|+.
T Consensus 132 ~~~ii~lDE~d~l~~---q~~L~~l~~~~~--~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPENLLS---EKILQYFEKWIS--SKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCSSSCC---THHHHHHHHHHH--CSSCCEEEEEECCSSC
T ss_pred CceEEEEecHHHhhc---chHHHHHHhccc--ccCCcEEEEEEecCcc
Confidence 346899999999872 234444554321 1123455667788774
No 215
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=90.40 E-value=0.33 Score=62.13 Aligned_cols=90 Identities=16% Similarity=-0.014 Sum_probs=62.9
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+++-|.+++. . .+..++|.|+.|||||.+.+--+.+.+...
T Consensus 2 ~L~~~Q~~av~-~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~----------------------------------- 43 (673)
T 1uaa_A 2 RLNPGQQQAVE-F--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC----------------------------------- 43 (673)
T ss_dssp CCCHHHHHHHH-C--CSSEEEECCCTTSCHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred CCCHHHHHHHh-C--CCCCEEEEeCCCCChHHHHHHHHHHHHHhc-----------------------------------
Confidence 47899999996 3 256899999999999998544444333210
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHH
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 324 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l 324 (1493)
+....++|+|+.|+..|.++.+.+.......+ ...+-|+|-..|..-+
T Consensus 44 ---~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~---------------------~~~~~v~Tfhs~~~~i 91 (673)
T 1uaa_A 44 ---GYQARHIAAVTFTNKAAREMKERVGQTLGRKE---------------------ARGLMISTFHTLGLDI 91 (673)
T ss_dssp ---CCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT---------------------TTTSEEEEHHHHHHHH
T ss_pred ---CCCHHHeEEEeccHHHHHHHHHHHHHHcCccc---------------------ccCCEEEeHHHHHHHH
Confidence 11234599999999999999999887643210 1257788988776543
No 216
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=90.40 E-value=0.29 Score=62.68 Aligned_cols=71 Identities=15% Similarity=-0.019 Sum_probs=52.1
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.++|-|.+++.. .+..++|.|+.|||||.+..--+...+...
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~----------------------------------- 43 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGC----------------------------------- 43 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhc-----------------------------------
Confidence 478999999963 346899999999999987544444333221
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhC
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGK 901 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~ 901 (1493)
...+.++|+|+.|+..|.++.+.+.....
T Consensus 44 ---~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 44 ---GYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp ---CCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred ---CCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 11234699999999999999999987643
No 217
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.26 E-value=0.37 Score=50.44 Aligned_cols=22 Identities=18% Similarity=-0.173 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCcchhHhhHH
Q psy16310 805 ARKDIVGAAETGSGKTLAFGIP 826 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~lp 826 (1493)
.|+=.++.||.|||||.+.+--
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~ 28 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRR 28 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 3455688999999999875433
No 218
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.74 E-value=0.23 Score=53.35 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=21.6
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 348 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~l 348 (1493)
+-+.+...++..+..... -.++++||||||+.+
T Consensus 69 ~~~~~~~~i~~~i~~~~~----~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNSF----NDETKVIGIDEVQFF 101 (223)
T ss_dssp EEESSTHHHHHHHHSTTS----CTTCCEEEECSGGGS
T ss_pred cccCCHHHHHHHHHHHhh----CCCCCEEEEecCccC
Confidence 445666777777654321 124789999999964
No 219
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.71 E-value=0.95 Score=51.92 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
+..+++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999764
No 220
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.46 E-value=1.1 Score=52.78 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
.+.+++.||+|+|||.++
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999764
No 221
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.28 E-value=0.34 Score=48.60 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.+..+++.+|+|+|||....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56789999999999998643
No 222
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.11 E-value=0.1 Score=54.55 Aligned_cols=19 Identities=32% Similarity=0.060 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
++-.++++|.|+|||...+
T Consensus 3 g~i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL 21 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 4557899999999999854
No 223
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=88.45 E-value=0.7 Score=59.48 Aligned_cols=112 Identities=17% Similarity=0.129 Sum_probs=71.3
Q ss_pred CCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchh
Q psy16310 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1493)
..+++-|.+++. . .+..++|.|..|||||.+..--+.+.+...
T Consensus 10 ~~Ln~~Q~~av~-~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~---------------------------------- 52 (724)
T 1pjr_A 10 AHLNKEQQEAVR-T--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK---------------------------------- 52 (724)
T ss_dssp TTSCHHHHHHHH-C--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT----------------------------------
T ss_pred hhCCHHHHHHHh-C--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc----------------------------------
Confidence 458999999996 3 245899999999999998544444333210
Q ss_pred hhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccc
Q psy16310 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331 (1493)
Q Consensus 252 ~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~ 331 (1493)
+....++|+|+.|+..|.++.+.+..+... . ...+-|+|-..|..-+-..+...
T Consensus 53 ----~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~-----------~-----------~~~~~v~Tfhs~~~~ilr~~~~~ 106 (724)
T 1pjr_A 53 ----HVAPWNILAITFTNKAAREMRERVQSLLGG-----------A-----------AEDVWISTFHSMCVRILRRDIDR 106 (724)
T ss_dssp ----CCCGGGEEEEESSHHHHHHHHHHHHHHHGG-----------G-----------GTTSEEEEHHHHHHHHHHHHGGG
T ss_pred ----CCCHHHeEEEeccHHHHHHHHHHHHHHhcc-----------c-----------ccCcEEeeHHHHHHHHHHHHHHH
Confidence 112245999999999999999888775321 0 01477889887754432222111
Q ss_pred cccccccEEEEecCch
Q psy16310 332 TELYKINYLVIDETDR 347 (1493)
Q Consensus 332 ~~l~~i~~lViDEAh~ 347 (1493)
..+ .-.+-|+|+.+.
T Consensus 107 ~g~-~~~f~i~d~~d~ 121 (724)
T 1pjr_A 107 IGI-NRNFSILDPTDQ 121 (724)
T ss_dssp GTC-CTTCEECCHHHH
T ss_pred hCC-CCCCEECCHHHH
Confidence 111 123567887764
No 224
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=88.20 E-value=0.66 Score=59.72 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=51.3
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..++|-|.+++.. .+..++|.|+.|||||.+..--+...+...
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~---------------------------------- 52 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK---------------------------------- 52 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTT----------------------------------
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc----------------------------------
Confidence 4679999999963 345899999999999987544444333211
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
...+.++|+|+.|+..|.++.+.+..+.
T Consensus 53 ----~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 53 ----HVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp ----CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 1123468999999999999888887753
No 225
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=87.97 E-value=2 Score=49.10 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
+..++++||+|+|||..+-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4689999999999998743
No 226
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=87.29 E-value=0.45 Score=59.26 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=27.9
Q ss_pred CChHHHHhhhhhhhcc-CCcEEEEccCCCchhHHHHHHH
Q psy16310 173 TPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPI 210 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~-~~dviv~apTGSGKTl~~~lpi 210 (1493)
.+|.-|.+++...+.- ..-.++.|+-|.|||.+..+.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~ 213 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI 213 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH
Confidence 5899999999744431 2346889999999997765544
No 227
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.22 E-value=1.3 Score=53.07 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
+..+++.||+|+|||..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999764
No 228
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=87.17 E-value=0.81 Score=62.60 Aligned_cols=129 Identities=20% Similarity=0.125 Sum_probs=74.3
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+|+-|.++|. . .+.+++|.|.-|||||.+.+--++..+.....
T Consensus 10 ~~t~eQ~~~i~-~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--------------------------------- 53 (1232)
T 3u4q_A 10 TWTDDQWNAIV-S--TGQDILVAAAAGSGKTAVLVERMIRKITAEEN--------------------------------- 53 (1232)
T ss_dssp CCCHHHHHHHH-C--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---------------------------------
T ss_pred CCCHHHHHHHh-C--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---------------------------------
Confidence 58999999996 3 36799999999999999955555544432100
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
....-++|+|++|+..|..+.+.+....... +.. +... ......+..-..+-|+|-..+..-+-..+....
T Consensus 54 ---~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~-~~~----~~~~-~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~ 124 (1232)
T 3u4q_A 54 ---PIDVDRLLVVTFTNASAAEMKHRIAEALEKE-LVQ----RPGS-LHIRRQLSLLNRASISTLHSFCLQVLKKYYYLI 124 (1232)
T ss_dssp ---CCCGGGEEEECSSHHHHHHHHHHHHHHHHHH-HHH----STTC-HHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGT
T ss_pred ---CCCccceEEEeccHHHHHHHHHHHHHHHHHH-hhc----Ccch-HHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhc
Confidence 0122359999999999999988886632100 000 0001 111111112236788998877654433322111
Q ss_pred ccccccEEEEecCch
Q psy16310 333 ELYKINYLVIDETDR 347 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ 347 (1493)
.+. -.+-|+||...
T Consensus 125 ~~~-~~f~~~d~~~~ 138 (1232)
T 3u4q_A 125 DLD-PGFRIADQTEG 138 (1232)
T ss_dssp TCC-TTCEECCHHHH
T ss_pred CCC-CCCeeCCHHHH
Confidence 121 12337788664
No 229
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=87.09 E-value=0.67 Score=63.42 Aligned_cols=71 Identities=27% Similarity=0.220 Sum_probs=53.0
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.+|+-|.++|.. .+.+++|.|.-|||||.+.+--++..+.....
T Consensus 10 ~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--------------------------------- 53 (1232)
T 3u4q_A 10 TWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEEN--------------------------------- 53 (1232)
T ss_dssp CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---------------------------------
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---------------------------------
Confidence 579999999962 36799999999999998855555554432110
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHh
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDA 899 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~ 899 (1493)
.....++|+|++|+..|..+.+.+...
T Consensus 54 ---~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 54 ---PIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp ---CCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred ---CCCccceEEEeccHHHHHHHHHHHHHH
Confidence 012346999999999999999888774
No 230
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.73 E-value=1.6 Score=45.94 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=15.2
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
..+++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999764
No 231
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=86.56 E-value=1.5 Score=49.82 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
+.++++.||||+|||..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57999999999999987543
No 232
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.31 E-value=1.5 Score=51.55 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
...+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999764
No 233
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.68 E-value=2.6 Score=49.36 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3568999999999999764
No 234
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.63 E-value=1.5 Score=49.77 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCcchhHhh
Q psy16310 806 RKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~ 824 (1493)
+.++++.||||+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5799999999999997643
No 235
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=85.37 E-value=3.7 Score=45.48 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
...++++||+|+|||..+-
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3579999999999998753
No 236
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.53 E-value=6.2 Score=46.01 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
.+..++++||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3568999999999999864
No 237
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=82.75 E-value=3.6 Score=47.21 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=23.0
Q ss_pred cHHHHhhHHHh---hccC---CcEEEEccCCCcchhHhh
Q psy16310 792 TKIQSMVMPSA---LLAR---KDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 792 t~iQ~~~i~~~---l~~~---~dvlv~apTGsGKTla~~ 824 (1493)
.|+|..++..+ +..| +.+++.||.|+|||..+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 57777776432 2333 358999999999997654
No 238
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=82.72 E-value=1.9 Score=44.79 Aligned_cols=20 Identities=20% Similarity=-0.081 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCcchhHhhH
Q psy16310 806 RKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~l 825 (1493)
++=.++.||.|||||.-.+-
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~ 39 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMR 39 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 45568899999999965333
No 239
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=82.72 E-value=5 Score=48.02 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
+..++++||+|+|||..+-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4689999999999998643
No 240
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.33 E-value=3.3 Score=49.03 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=29.0
Q ss_pred ceeEEEecccchhc---cCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 953 KINYLVIDETDRMI---ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 953 ~l~~lVlDEah~ll---~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|++-++. +..+...+..+...+ .+..-+++++|+.....
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~-----~pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL-----KPDDVILVIDASIGQKA 227 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH-----CCSEEEEEEEGGGGGGG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhh-----CCcceEEEEeCccchHH
Confidence 56899999998643 223445566665555 24455677888875443
No 241
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=82.00 E-value=5 Score=45.72 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=30.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhh-HHHhhccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMV-MPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~-i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
..|.++.-...+.+.|...-. .|....- +.......+.+++.||+|+|||..+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 458888777777777764321 1111000 0001112357999999999999764
No 242
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=81.82 E-value=2.9 Score=52.27 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=56.3
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.|+|+|...+. .+...+-+++.++-|+|||.+....++..++.
T Consensus 163 ~l~p~Q~~i~~-~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~------------------------------------ 205 (592)
T 3cpe_A 163 QLRDYQRDMLK-IMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF------------------------------------ 205 (592)
T ss_dssp CCCHHHHHHHH-HHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT------------------------------------
T ss_pred cCCHHHHHHHH-hhccccEEEEEEcCccChHHHHHHHHHHHHHh------------------------------------
Confidence 68999999986 44455778999999999998866554443321
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCC
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 904 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~ 904 (1493)
.++..+++++||+..|..+...++.+....+
T Consensus 206 ----~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 206 ----NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp ----SSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred ----CCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 2345799999999999999988888765543
No 243
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=81.63 E-value=1.2 Score=55.34 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=28.8
Q ss_pred CCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHH
Q psy16310 790 TPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPIL 828 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil 828 (1493)
.+|.-|.+++..++.. ..-.++.|+-|.|||.+..+.+-
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a 214 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS 214 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH
Confidence 5799999999755431 22468899999999977666543
No 244
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=81.50 E-value=7.6 Score=40.89 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.5
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999753
No 245
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=80.60 E-value=1.6 Score=46.05 Aligned_cols=22 Identities=14% Similarity=-0.209 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCcchhHhhHH
Q psy16310 805 ARKDIVGAAETGSGKTLAFGIP 826 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~lp 826 (1493)
.|.=.++.+|-|||||...+.-
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~ 48 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR 48 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 3455688999999999764433
No 246
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.16 E-value=2.4 Score=48.59 Aligned_cols=24 Identities=29% Similarity=0.025 Sum_probs=18.2
Q ss_pred ccCCcEEEEccCCCcchhHhhHHH
Q psy16310 804 LARKDIVGAAETGSGKTLAFGIPI 827 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~~lpi 827 (1493)
..|.-+++.||+|+|||...+-.+
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHH
Confidence 346788999999999997654433
No 247
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.09 E-value=7 Score=45.53 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999764
No 248
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=79.80 E-value=3.3 Score=47.60 Aligned_cols=35 Identities=11% Similarity=-0.098 Sum_probs=23.8
Q ss_pred ChHHHHhhhhhh---hccC---CcEEEEccCCCchhHHHHH
Q psy16310 174 PTKIQSMVMPSA---LLAR---KDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 174 pt~iQ~~~i~~~---l~~~---~dviv~apTGSGKTl~~~l 208 (1493)
++|+|.+++... +..+ +.+++.||.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 457777776422 2233 2489999999999987543
No 249
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.75 E-value=3.1 Score=47.83 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=15.1
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
..+++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 58999999999999764
No 250
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.89 E-value=4.4 Score=47.36 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
...++++||+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999874
No 251
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=78.58 E-value=2.7 Score=44.93 Aligned_cols=24 Identities=17% Similarity=-0.069 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCcchhHhhHHHHH
Q psy16310 806 RKDIVGAAETGSGKTLAFGIPILT 829 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~lpil~ 829 (1493)
|+=.++.|+.|||||.+.+--+..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r 42 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRR 42 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHH
Confidence 455678999999999875544443
No 252
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=78.46 E-value=1.3 Score=46.76 Aligned_cols=20 Identities=15% Similarity=-0.175 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.|.=.+++++-|||||...+
T Consensus 27 ~G~I~vitG~M~sGKTT~Ll 46 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELI 46 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 35567889999999997643
No 253
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=77.59 E-value=3.7 Score=44.55 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.1
Q ss_pred hccCCcEEEEccCCCcchhHhhH
Q psy16310 803 LLARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~l 825 (1493)
+..|.-+++.||+|+|||..+.-
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~ 42 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQ 42 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 34577889999999999976443
No 254
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=77.55 E-value=1.6 Score=52.55 Aligned_cols=22 Identities=27% Similarity=-0.038 Sum_probs=17.2
Q ss_pred hccCCcEEEEccCCCcchhHhh
Q psy16310 803 LLARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~ 824 (1493)
+..|.-+++.|++|+|||...+
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal 218 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFAL 218 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHH
Confidence 4456678999999999996543
No 255
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=77.39 E-value=2 Score=44.66 Aligned_cols=17 Identities=24% Similarity=-0.019 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCchhHH
Q psy16310 189 RKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~ 205 (1493)
++=.++.+|.|||||.-
T Consensus 20 g~l~fiyG~MgsGKTt~ 36 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE 36 (195)
T ss_dssp CEEEEEEECTTSCHHHH
T ss_pred eEEEEEECCCCCcHHHH
Confidence 45678899999999965
No 256
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=76.92 E-value=3.1 Score=44.42 Aligned_cols=22 Identities=18% Similarity=-0.040 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGIPI 210 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~lpi 210 (1493)
|+=.+++++-|||||...+--+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~ 40 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRV 40 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 4556789999999998844433
No 257
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=76.65 E-value=1.5 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.059 Sum_probs=17.9
Q ss_pred hccCCcEEEEccCCCcchhHhhH
Q psy16310 803 LLARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~l 825 (1493)
+..|.-+++.|++|+|||...+-
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ 222 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALN 222 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 44567889999999999975443
No 258
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=76.42 E-value=2.3 Score=48.57 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=17.2
Q ss_pred ceeEEEecccchhccCCChhHHHHHHHH
Q psy16310 953 KINYLVIDETDRMIESGHFPELKNILDR 980 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~~~~l~~il~~ 980 (1493)
..++|||||+|.+........+..+++.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEA 132 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHh
Confidence 5689999999988622223334444443
No 259
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.25 E-value=24 Score=40.73 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999864
No 260
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=75.55 E-value=5.9 Score=46.87 Aligned_cols=20 Identities=35% Similarity=0.243 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
+.-+++++++|+|||....-
T Consensus 97 ~~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45678899999999987543
No 261
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=74.35 E-value=5.4 Score=45.42 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhHHH
Q psy16310 191 DIVGAAETGSGKTLAF 206 (1493)
Q Consensus 191 dviv~apTGSGKTl~~ 206 (1493)
-+++.+|+|+|||..+
T Consensus 50 ~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 50 IILHSPSPGTGKTTVA 65 (324)
T ss_dssp EEEECSSTTSSHHHHH
T ss_pred EEEeeCcCCCCHHHHH
Confidence 4577788999999874
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=74.10 E-value=17 Score=43.04 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCcchhHhhH
Q psy16310 806 RKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~l 825 (1493)
+.-+++++++|+|||....-
T Consensus 100 p~vIlivG~~G~GKTTt~~k 119 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHH
Confidence 34688999999999987543
No 263
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=74.08 E-value=1.9 Score=42.73 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=17.9
Q ss_pred ccCCcEEEEccCCCchhHHHH
Q psy16310 187 LARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~~ 207 (1493)
..+.++++.+|+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456799999999999998753
No 264
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=73.99 E-value=2.4 Score=48.50 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=17.8
Q ss_pred hccCCcEEEEccCCCcchhHhhH
Q psy16310 803 LLARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~l 825 (1493)
+..|.=+++.|++|+|||..++-
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ 65 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMN 65 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH
Confidence 44566789999999999975443
No 265
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=73.06 E-value=1.9 Score=42.71 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=17.7
Q ss_pred ccCCcEEEEccCCCcchhHhh
Q psy16310 804 LARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~~ 824 (1493)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456799999999999997643
No 266
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=72.83 E-value=1.9 Score=42.62 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=17.1
Q ss_pred ccCCcEEEEccCCCchhHHH
Q psy16310 187 LARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~ 206 (1493)
..+.++++++|+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 45679999999999999864
No 267
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=72.13 E-value=1.9 Score=42.52 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=17.0
Q ss_pred ccCCcEEEEccCCCcchhHh
Q psy16310 804 LARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~ 823 (1493)
..+.++++.||+|+|||.++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 45679999999999999753
No 268
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=71.44 E-value=11 Score=40.04 Aligned_cols=21 Identities=29% Similarity=0.112 Sum_probs=16.8
Q ss_pred ccCCcEEEEccCCCcchhHhh
Q psy16310 804 LARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~~ 824 (1493)
..|.-+++.||+|+|||....
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 356788999999999996543
No 269
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.39 E-value=6.8 Score=45.16 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=14.0
Q ss_pred cEEEEccCCCcchhHh
Q psy16310 808 DIVGAAETGSGKTLAF 823 (1493)
Q Consensus 808 dvlv~apTGsGKTla~ 823 (1493)
.+++.||+|+|||..+
T Consensus 38 ~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4999999999999764
No 270
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=71.36 E-value=12 Score=41.36 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=19.2
Q ss_pred hccCCcEEEEccCCCcchhHhhHH
Q psy16310 803 LLARKDIVGAAETGSGKTLAFGIP 826 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~lp 826 (1493)
+..|.-+++.||+|+|||..+...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHH
Confidence 456788999999999999765443
No 271
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=70.70 E-value=6.9 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.052 Sum_probs=18.2
Q ss_pred ccCCcEEEEccCCCchhHHHHHH
Q psy16310 187 LARKDIVGAAETGSGKTLAFGIP 209 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~~lp 209 (1493)
..|.-+++.||+|+|||..++-.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~l 127 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQL 127 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHH
Confidence 34678999999999999875443
No 272
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=68.83 E-value=4.1 Score=49.63 Aligned_cols=41 Identities=24% Similarity=0.108 Sum_probs=28.5
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHH
Q psy16310 163 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 163 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~ 205 (1493)
...|.+.|. +++.+..-+...+..|..++++||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344556664 33444455544566788999999999999985
No 273
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.03 E-value=1.9 Score=51.02 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=37.5
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 767 MAEWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
..+|++.+-.+...+.|.+. -+.+|--++...++ ..+.+++.||+|+|||+.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~----~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR----APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC----CCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCeeEEECcCCCCHHHHH
Confidence 35799998888888887643 23445445544443 3578999999999999763
No 274
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=67.79 E-value=9.2 Score=43.50 Aligned_cols=23 Identities=26% Similarity=0.107 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCCcchhHhhHHH
Q psy16310 805 ARKDIVGAAETGSGKTLAFGIPI 827 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~lpi 827 (1493)
.|.-+++.||+|+|||...+-.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999997654333
No 275
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=67.56 E-value=16 Score=42.68 Aligned_cols=19 Identities=16% Similarity=-0.088 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCcchhHhh
Q psy16310 806 RKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~ 824 (1493)
|.-+++.+|+|+|||....
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 4578999999999997654
No 276
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=67.17 E-value=21 Score=40.19 Aligned_cols=43 Identities=16% Similarity=0.368 Sum_probs=25.0
Q ss_pred cceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
...+++||||||.|... ....+++.+.. |++.-++++.++-+.
T Consensus 81 ~~~kvviIdead~lt~~----a~naLLk~LEe---p~~~t~fIl~t~~~~ 123 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ----AANAFLKALEE---PPEYAVIVLNTRRWH 123 (305)
T ss_dssp SSSEEEEETTGGGBCHH----HHHHTHHHHHS---CCTTEEEEEEESCGG
T ss_pred CCceEEEeccHHHhCHH----HHHHHHHHHhC---CCCCeEEEEEECChH
Confidence 35689999999998542 33445555421 233445555555443
No 277
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=66.73 E-value=7.4 Score=44.79 Aligned_cols=22 Identities=18% Similarity=-0.062 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCCcchhHhhHH
Q psy16310 805 ARKDIVGAAETGSGKTLAFGIP 826 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~lp 826 (1493)
.|.-+++.||+|+|||...+-.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~l 142 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTL 142 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999764433
No 278
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.23 E-value=3 Score=49.42 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=37.8
Q ss_pred cccccccCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 150 MAEWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
..+|++++--+...+.|.+. -+.+|--++..-++ ..+.+|+.||+|+|||+.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~----~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR----APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC----CCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCeeEEECcCCCCHHHHH
Confidence 35799998888877777643 23445555555444 3568999999999999974
No 279
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=65.48 E-value=3.7 Score=50.04 Aligned_cols=39 Identities=26% Similarity=0.156 Sum_probs=26.5
Q ss_pred HHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 782 ALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 782 ~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
.|.+.|. +++.+..-+...+..|..++++||||||||..
T Consensus 238 ~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 238 DLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3444553 23444444544567788999999999999975
No 280
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=64.60 E-value=4.1 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.046 Sum_probs=17.8
Q ss_pred hccCCcEEEEccCCCcchhHhhH
Q psy16310 803 LLARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~l 825 (1493)
+..|.-++++|++|+|||...+-
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ 87 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALK 87 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH
Confidence 44567789999999999965433
No 281
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=64.49 E-value=12 Score=44.40 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
+.-+++++++|+|||....-
T Consensus 100 p~vIlivG~~G~GKTTt~~k 119 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHH
Confidence 34678999999999997543
No 282
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=62.35 E-value=19 Score=43.19 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEccc
Q psy16310 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PT 268 (1493)
+..+.+.+-||||||++..-.+- ..+..+|||+|+
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~---------------------------------------------~~~~p~lvv~~~ 48 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAE---------------------------------------------RHAGPVVLIAPD 48 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHH---------------------------------------------HSSSCEEEEESS
T ss_pred CCeEEEeCCCchHHHHHHHHHHH---------------------------------------------HhCCCEEEEeCC
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEcCC-----------------CHHHHHHHhcCCCCEEEeCcHHHH
Q psy16310 269 RELAIQVQNHILDAGKYTPVKVACVVGGM-----------------STEKQLRILNKCPHILVATPGRLW 321 (1493)
Q Consensus 269 reLa~Qi~~~~~~l~~~~~i~v~~~~G~~-----------------~~~~~~~~l~~~~~IiV~TP~~L~ 321 (1493)
..+|.|.++.+..+.... ..++-.+ ....-.........|||+|...|+
T Consensus 49 ~~~A~~l~~~l~~~~~~~----v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~ 114 (483)
T 3hjh_A 49 MQNALRLHDEISQFTDQM----VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLM 114 (483)
T ss_dssp HHHHHHHHHHHHHTCSSC----EEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHH
T ss_pred HHHHHHHHHHHHhhCCCc----EEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHh
No 283
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=62.20 E-value=2.2 Score=48.84 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=18.6
Q ss_pred hhccCCcEEEEccCCCchhHHHHH
Q psy16310 185 ALLARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 185 ~l~~~~dviv~apTGSGKTl~~~l 208 (1493)
-+..|.-+++.|++|+|||..++-
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ 65 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMN 65 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHH
Confidence 345577788999999999986443
No 284
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=61.12 E-value=12 Score=44.94 Aligned_cols=25 Identities=24% Similarity=0.009 Sum_probs=19.1
Q ss_pred hccCCcEEEEccCCCchhHHHHHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAFGIPI 210 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~~lpi 210 (1493)
+..|.-+++.|++|+|||..++--+
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia 224 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIA 224 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4557788999999999998654433
No 285
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=59.62 E-value=7.1 Score=46.76 Aligned_cols=23 Identities=26% Similarity=-0.045 Sum_probs=17.9
Q ss_pred hccCCcEEEEccCCCchhHHHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~~l 208 (1493)
+..|.-++++|++|+|||..++-
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ 219 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALT 219 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHH
Confidence 44567788999999999976443
No 286
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.51 E-value=3.1 Score=48.50 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=34.9
Q ss_pred ccccccCCCCHHHHHHHHHCC---CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 767 MAEWVKFNIPETIIRALYQKG---FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
-.+|++.+=-+...+.|.+.= +.+|--++...++ ..+.+|+.||+|+|||+.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~----~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA----QPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC----CCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCceEEeCCCCCCHHHHH
Confidence 357899886677777776431 2333333333332 3578999999999999764
No 287
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=59.13 E-value=3.2 Score=46.91 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=30.5
Q ss_pred cccccCCCCHHHHHHHHHCC---CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQKG---FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
..|++++-...+.+.|.+.- ...|..++. ..+..++.+++.||+|+|||..+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~----~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLK----FGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHH----HCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHH----cCCCCCceEEEECCCCcCHHHHH
Confidence 45777776666666665421 011111111 11234678999999999999764
No 288
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.11 E-value=4.2 Score=47.47 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=34.5
Q ss_pred ccccccCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 151 AEWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
.+|++++=-....+.|.+. -+..|--++..-++ ..+.+|+.||+|+|||+.+
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~----~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA----QPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC----CCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCceEEeCCCCCCHHHHH
Confidence 4688887666666666543 22334444444333 3568999999999999974
No 289
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=56.81 E-value=13 Score=40.71 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHHHhhccC----C-cEEEEccCCCcchhHhh
Q psy16310 778 TIIRALYQKGFKTPTKIQSMVMPSALLAR----K-DIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 778 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~----~-dvlv~apTGsGKTla~~ 824 (1493)
.+.+-|+..||. |++...+=..+..+ + .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 678888888875 66644432223232 2 59999999999998765
No 290
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=56.09 E-value=4.6 Score=45.56 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=29.6
Q ss_pred ccccccCCCHHHHHHHHHCC---CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 151 AEWVKFNIPETIIRALYQKG---FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
..|++++-...+.+.|.+.- ...|..++.. .+..++.++++||+|+|||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~----~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF----GMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH----CCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc----CCCCCceEEEECCCCcCHHHHH
Confidence 35667665566655554320 1111111111 1234678999999999999874
No 291
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=55.99 E-value=18 Score=41.41 Aligned_cols=21 Identities=19% Similarity=-0.029 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCCchhHHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~l 208 (1493)
.|.-+++.||+|||||..++-
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~ 141 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHT 141 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 466789999999999987543
No 292
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=55.14 E-value=8.8 Score=45.82 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
...++++.|+||||||...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 3569999999999999974
No 293
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.12 E-value=3.5 Score=48.82 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=32.9
Q ss_pred cccccCCCCHHHHHHHHHC---CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
.+|++.+--+...+.|.+. -+.+|--++...++ ..+.+|+.||+|+|||+.+
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~----~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK----PPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC----CCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCeEEEECCCCCcHHHHH
Confidence 4688887666666666542 12333333333332 3578999999999999864
No 294
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=54.79 E-value=4.3 Score=44.54 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=27.5
Q ss_pred ccccCCCCHHHHHHHHHCC--CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 769 EWVKFNIPETIIRALYQKG--FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
.|+++.-.+.+.+.+.+.- +..|..+.... +...+.+++.||+|+|||..+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g----~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLG----AKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC----------CCCCCEEEEESCTTSSHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC----CCCCceEEEECCCCCCHHHHH
Confidence 4666655555665554320 11222222111 123468999999999999764
No 295
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.67 E-value=4.8 Score=47.66 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=33.6
Q ss_pred ccccccCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 151 AEWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
.+|++++--....+.|.+. -+..|--++..-++ ..+-+|+.||+|+|||+.+
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~----~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK----PPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC----CCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCeEEEECCCCCcHHHHH
Confidence 4688887666666665443 22334444433332 3568999999999999974
No 296
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=54.09 E-value=5.2 Score=43.85 Aligned_cols=19 Identities=32% Similarity=0.309 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
..+.++++||+|+|||..+
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999864
No 297
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=54.09 E-value=8.7 Score=53.94 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=0.0
Q ss_pred hccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEE
Q psy16310 803 LLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALIL 882 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 882 (1493)
+..++++++++|+|+|||..+...+.+.. ..+.+++|+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~------------------------------------------~~G~~v~Fi 1461 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ------------------------------------------REGKTCAFI 1461 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH------------------------------------------TTTCCEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH------------------------------------------HcCCcEEEE
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccc---cceeEEEe
Q psy16310 883 APTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL---YKINYLVI 959 (1493)
Q Consensus 883 ~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l---~~l~~lVl 959 (1493)
..--.+.... ++.++-.+.- +.|..|.-...++. ....+ ..+++|||
T Consensus 1462 ~~e~~~~~l~---a~~~G~dl~~-----------------------l~v~~~~~~E~~l~----~~~~lvr~~~~~lVVI 1511 (2050)
T 3cmu_A 1462 DAEHALDPIY---ARKLGVDIDN-----------------------LLCSQPDTGEQALE----ICDALARSGAVDVIVV 1511 (2050)
T ss_dssp CTTSCCCHHH---HHHTTCCTTT-----------------------CEEECCSSHHHHHH----HHHHHHHHTCCSEEEE
T ss_pred EcccccCHHH---HHHcCCCchh-----------------------ceeecCChHHHHHH----HHHHHHhcCCCCEEEE
Q ss_pred cccchhc
Q psy16310 960 DETDRMI 966 (1493)
Q Consensus 960 DEah~ll 966 (1493)
||.+-+.
T Consensus 1512 Dsi~al~ 1518 (2050)
T 3cmu_A 1512 DSVAALT 1518 (2050)
T ss_dssp SCGGGCC
T ss_pred cChhHhc
No 298
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.71 E-value=5.3 Score=46.83 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=34.7
Q ss_pred cccccCCCCHHHHHHHHHC---CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
.+|++.+=-+...+.|.+. -+..|--++...++ ..+.+|+.||.|+|||+.+
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~----~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK----PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC----CCSEEEEESSTTTTHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCCCceECCCCchHHHHH
Confidence 4688887556666666542 23455445544443 3478999999999999864
No 299
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=53.39 E-value=27 Score=39.51 Aligned_cols=24 Identities=25% Similarity=0.063 Sum_probs=18.3
Q ss_pred ccCCcEEEEccCCCchhHHHHHHH
Q psy16310 187 LARKDIVGAAETGSGKTLAFGIPI 210 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~~lpi 210 (1493)
..|.-+++.|++|+|||..++-.+
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 346778999999999998754333
No 300
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=52.33 E-value=7.7 Score=42.64 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=17.0
Q ss_pred ccCCcEEEEccCCCchhHHH
Q psy16310 187 LARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~ 206 (1493)
..+..++++||+|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 34679999999999999864
No 301
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=52.18 E-value=8.7 Score=45.86 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=18.7
Q ss_pred CCcEEEEccCCCcchhHhhHHHHHHH
Q psy16310 806 RKDIVGAAETGSGKTLAFGIPILTGI 831 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~lpil~~l 831 (1493)
..++++.|+||||||... .+++..+
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~ 77 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTG 77 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHH
Confidence 469999999999999874 3444433
No 302
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.04 E-value=5.1 Score=47.44 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=34.9
Q ss_pred cccccCCCCHHHHHHHHHCC---CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQKG---FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
.+|++.+--+.+.+.|.+.= +..|--++...+ ...+.+|+.||+|+|||+.+
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi----~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI----DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC----CCCCceEeeCCCCCcHHHHH
Confidence 56889887777787776532 223333333222 24578999999999999764
No 303
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.84 E-value=7.4 Score=45.63 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=34.9
Q ss_pred ccccccCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 151 AEWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
.+|++++=-..+.+.|.+. -+..|--++..-++ ..+.+|+.+|.|+|||+.+
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~----~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK----PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC----CCSEEEEESSTTTTHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCCCceECCCCchHHHHH
Confidence 4688887555655555443 23445555555444 3468999999999999974
No 304
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.71 E-value=4.6 Score=47.74 Aligned_cols=52 Identities=8% Similarity=0.144 Sum_probs=33.2
Q ss_pred cccccCCCCHHHHHHHHHC---CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
.+|++.+=-+.+.+.|.+. -+..|--++...++ ..+.+++.||+|+|||+.+
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~----~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGID----PPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC----CCCEEEEESCTTTTHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCceEEEECCCCCCHHHHH
Confidence 5688887666666666542 22333333333332 3468999999999999764
No 305
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=51.39 E-value=7.5 Score=42.72 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.8
Q ss_pred ccCCcEEEEccCCCcchhHh
Q psy16310 804 LARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~ 823 (1493)
..+..+++.||+|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 35679999999999999754
No 306
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=50.88 E-value=11 Score=40.55 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.6
Q ss_pred hccCCcEEEEccCCCchhHHHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~~l 208 (1493)
+..|.-+++.||+|+|||..++-
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~ 42 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQ 42 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 44677889999999999987443
No 307
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.81 E-value=5.7 Score=47.09 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=34.7
Q ss_pred ccccccCCCHHHHHHHHHCC---CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 151 AEWVKFNIPETIIRALYQKG---FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
.+|++.+--..+.+.|.+.- +..|--++..-+ ...+.+|+.||.|+|||+.+
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi----~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI----DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC----CCCCceEeeCCCCCcHHHHH
Confidence 46888887777777776531 223333333322 23578999999999999864
No 308
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=50.79 E-value=6 Score=44.06 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=30.4
Q ss_pred cccccCCCCHHHHHHHHHCCC---CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQKGF---KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~---~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
..|+++.-.+...+.|...-. ..|..++.. .+..+..+++.||+|+|||..+
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKV----GIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHH----CCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc----CCCCCCeEEEECCCCCcHHHHH
Confidence 357777766766666654210 111111110 1234578999999999999764
No 309
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=50.20 E-value=6.6 Score=44.62 Aligned_cols=18 Identities=33% Similarity=0.224 Sum_probs=15.2
Q ss_pred CcEEEEccCCCcchhHhh
Q psy16310 807 KDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~ 824 (1493)
+-++++||||||||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997654
No 310
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.03 E-value=6.4 Score=46.52 Aligned_cols=52 Identities=8% Similarity=0.144 Sum_probs=33.1
Q ss_pred ccccccCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 151 AEWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
.+|++.+=-..+.+.|.+. -+..|--++..-++ ..+-+|+.||+|+|||+.+
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~----~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGID----PPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC----CCCEEEEESCTTTTHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCceEEEECCCCCCHHHHH
Confidence 4688887666666665442 22334344433332 3567999999999999974
No 311
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=49.97 E-value=7.8 Score=43.39 Aligned_cols=18 Identities=33% Similarity=0.082 Sum_probs=14.7
Q ss_pred cEEEEccCCCchhHHHHH
Q psy16310 191 DIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~l 208 (1493)
-++++||||||||..+.-
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 478899999999987543
No 312
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=49.97 E-value=9.1 Score=40.84 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=21.5
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchh
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 965 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~l 965 (1493)
+.+.+...+++.+..... -...++|||||++.+
T Consensus 69 ~~~~~~~~i~~~i~~~~~----~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNSF----NDETKVIGIDEVQFF 101 (223)
T ss_dssp EEESSTHHHHHHHHSTTS----CTTCCEEEECSGGGS
T ss_pred cccCCHHHHHHHHHHHhh----CCCCCEEEEecCccC
Confidence 345666777777754221 124689999999964
No 313
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=49.61 E-value=7.9 Score=43.97 Aligned_cols=19 Identities=32% Similarity=0.146 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchhHHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~l 208 (1493)
+-++++||||||||.....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4688999999999997543
No 314
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=49.60 E-value=7.8 Score=42.59 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=17.3
Q ss_pred hccCCcEEEEccCCCchhHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~ 206 (1493)
+..|.-+++++|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 346778999999999999863
No 315
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=49.59 E-value=8 Score=43.39 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~l 208 (1493)
.-++++||||||||..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3477899999999987543
No 316
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=49.39 E-value=8.6 Score=40.16 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchhHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~ 207 (1493)
..++++||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 689999999999998743
No 317
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=49.32 E-value=9.3 Score=44.26 Aligned_cols=23 Identities=48% Similarity=0.504 Sum_probs=19.2
Q ss_pred hhhccCCcEEEEccCCCchhHHH
Q psy16310 184 SALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 184 ~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
..+..|..+++++|||||||...
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHH
T ss_pred HHHhcCCEEEEECCCCCCHHHHH
Confidence 34567889999999999999863
No 318
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=49.23 E-value=7 Score=43.76 Aligned_cols=17 Identities=35% Similarity=0.139 Sum_probs=14.1
Q ss_pred cEEEEccCCCcchhHhh
Q psy16310 808 DIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~ 824 (1493)
-++++||||||||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47889999999997654
No 319
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=49.19 E-value=7.1 Score=43.83 Aligned_cols=17 Identities=24% Similarity=0.032 Sum_probs=14.1
Q ss_pred cEEEEccCCCcchhHhh
Q psy16310 808 DIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~ 824 (1493)
-++++||||||||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 46889999999997644
No 320
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=48.87 E-value=8.8 Score=44.48 Aligned_cols=22 Identities=50% Similarity=0.502 Sum_probs=18.8
Q ss_pred HhhccCCcEEEEccCCCcchhH
Q psy16310 801 SALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 801 ~~l~~~~dvlv~apTGsGKTla 822 (1493)
..+..|..++++||||||||..
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHH
T ss_pred HHHhcCCEEEEECCCCCCHHHH
Confidence 3456789999999999999975
No 321
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=48.63 E-value=7.4 Score=42.80 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=17.3
Q ss_pred hccCCcEEEEccCCCcchhHh
Q psy16310 803 LLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~ 823 (1493)
+..|.-++++||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 446778999999999999753
No 322
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=48.51 E-value=8.7 Score=42.67 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=29.2
Q ss_pred cccccCCCHHHHHHHHHCC---CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 152 EWVKFNIPETIIRALYQKG---FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
.|+++.-.....+.+...- ...+..++.. .+..+..++++||+|+|||..+
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKV----GIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHH----CCCCCSEEEEESSSSSSHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc----CCCCCCeEEEECCCCCcHHHHH
Confidence 4666666666666654321 1111111111 1234678999999999999864
No 323
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=48.50 E-value=8 Score=40.23 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.++-+++.||||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4567899999999998653
No 324
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=48.33 E-value=7.3 Score=39.85 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
...++++||+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999874
No 325
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=48.10 E-value=4.2 Score=44.49 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=28.6
Q ss_pred cccccCCCCHHHHHHHHHCCC--CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQKGF--KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~--~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
.+|+++.-.+.....+.+.-. ..+.-++... +.-.+.+++.||+|+|||..+
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~----~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG----ARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTT----CCCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcC----CCCCCeEEEECCCCCCHHHHH
Confidence 457777666666666554321 1111111111 111245999999999999753
No 326
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=47.81 E-value=10 Score=44.39 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
.+.+++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999874
No 327
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=47.61 E-value=23 Score=38.73 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCCCChHHHHhh-hhhhhccC---C-cEEEEccCCCchhHHHH
Q psy16310 161 TIIRALYQKGFKTPTKIQSMV-MPSALLAR---K-DIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 161 ~l~~~l~~~g~~~pt~iQ~~~-i~~~l~~~---~-dviv~apTGSGKTl~~~ 207 (1493)
.+.+.|.-.||. +++... +...+.+. + .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 677888888885 455332 22233221 2 49999999999999865
No 328
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=47.40 E-value=7.1 Score=39.97 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
...+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999764
No 329
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=47.05 E-value=14 Score=38.16 Aligned_cols=20 Identities=30% Similarity=0.027 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCcchhHhhH
Q psy16310 806 RKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~l 825 (1493)
|+=.++.||.|+|||...+-
T Consensus 3 g~i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS 22 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHH
Confidence 45578899999999987543
No 330
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=46.46 E-value=6.8 Score=39.95 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
..+++++||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 5689999999999998643
No 331
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=46.07 E-value=10 Score=42.66 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
.+..++++||||+|||+++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999874
No 332
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=45.83 E-value=11 Score=38.59 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
.|+-++++||+|||||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999864
No 333
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=45.79 E-value=3.6 Score=45.68 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=26.9
Q ss_pred cccccCCCCHHHHHHHHHCC---CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQKG---FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
..|++++-.+.+.+.|.+.- +..|.-++.-. +.-.+.+++.||.|+|||..+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~----l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALG----LVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTT----CCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC----CCCCCeEEEECCCCCcHHHHH
Confidence 46888887777777775421 11111111111 112244999999999999753
No 334
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=45.73 E-value=9.7 Score=42.90 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=16.9
Q ss_pred ccCCcEEEEccCCCcchhHh
Q psy16310 804 LARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~ 823 (1493)
..+..+++.||||+|||.++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34679999999999999764
No 335
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=45.64 E-value=7 Score=46.70 Aligned_cols=26 Identities=23% Similarity=0.001 Sum_probs=19.0
Q ss_pred hccCCcEEEEccCCCcchhHhhHHHH
Q psy16310 803 LLARKDIVGAAETGSGKTLAFGIPIL 828 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~lpil 828 (1493)
+..|.-+++.|++|+|||...+--+.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 44567789999999999975443333
No 336
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=45.53 E-value=8 Score=42.19 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHH
Q psy16310 190 KDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~ 206 (1493)
+.+++.+|+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999864
No 337
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=45.31 E-value=18 Score=40.96 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=30.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHh----hccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSA----LLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~----l~~~~dvlv~apTGsGKTla~ 823 (1493)
..|++++-.+.+.+.|.+.-. .|.+. |.. ....+.+++.||+|+|||..+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~~~---~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPIKF---PHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHHHC---GGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHHhC---HHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 468888777777777653210 01110 111 122368999999999999764
No 338
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=45.16 E-value=14 Score=44.66 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.0
Q ss_pred hhccCCcEEEEccCCCchhHHH
Q psy16310 185 ALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 185 ~l~~~~dviv~apTGSGKTl~~ 206 (1493)
++..+.+++++||+|+|||..+
T Consensus 37 al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 37 AALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHTCEEEEECCSSSSHHHHH
T ss_pred HHhcCCeeEeecCchHHHHHHH
Confidence 5567889999999999999864
No 339
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=44.95 E-value=6.5 Score=40.11 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
...+++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999764
No 340
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=44.92 E-value=11 Score=39.20 Aligned_cols=22 Identities=27% Similarity=0.057 Sum_probs=17.6
Q ss_pred ccCCcEEEEccCCCchhHHHHH
Q psy16310 187 LARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~~l 208 (1493)
..++.++++|++|||||.+.-.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHH
Confidence 3567899999999999997543
No 341
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=44.82 E-value=11 Score=39.35 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
.++-+++++|||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3667899999999998654
No 342
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=44.73 E-value=11 Score=40.26 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.+..++++||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 36789999999999998743
No 343
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=44.66 E-value=10 Score=38.83 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.|+-++++||+|||||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999754
No 344
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=44.42 E-value=9.4 Score=39.14 Aligned_cols=20 Identities=25% Similarity=0.106 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
.+.++++|++|||||.+.-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45799999999999997543
No 345
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=44.36 E-value=15 Score=43.02 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=17.4
Q ss_pred cCCcEEEEccCCCchhHHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~l 208 (1493)
.+.+++++|+||||||...-.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 467999999999999986544
No 346
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=44.35 E-value=8.8 Score=43.21 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
+.+++++||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999998753
No 347
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=43.98 E-value=5.3 Score=44.42 Aligned_cols=53 Identities=13% Similarity=-0.016 Sum_probs=29.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHh-hccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSA-LLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~-l~~~~dvlv~apTGsGKTla~ 823 (1493)
..|+++.-.+.+...+.+.-...-. ...+... +.-.+.+++.+|+|+|||..+
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~---~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKN---PSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHC---HHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHC---HHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 4577777677776666543211000 0111110 111235999999999999753
No 348
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=43.95 E-value=10 Score=40.55 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.+..+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 349
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=43.80 E-value=11 Score=39.43 Aligned_cols=21 Identities=29% Similarity=0.072 Sum_probs=17.1
Q ss_pred ccCCcEEEEccCCCcchhHhh
Q psy16310 804 LARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~~ 824 (1493)
..++.++++|++|||||...-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 356789999999999998643
No 350
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=43.79 E-value=5 Score=44.58 Aligned_cols=52 Identities=21% Similarity=0.366 Sum_probs=26.5
Q ss_pred ccccccCCCHHHHHHHHHCC---CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 151 AEWVKFNIPETIIRALYQKG---FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
.+|.+++-...+.+.|.+.- +..+.-++.-.+ .-.+.+++.||.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l----~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGL----VTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTC----CCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC----CCCCeEEEECCCCCcHHHHH
Confidence 35777776666666665421 111221221111 11234999999999999864
No 351
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=43.66 E-value=9.1 Score=41.80 Aligned_cols=17 Identities=29% Similarity=-0.146 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHHH
Q psy16310 191 DIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~ 207 (1493)
-++++||||||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47889999999998754
No 352
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=43.57 E-value=11 Score=42.97 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.1
Q ss_pred hhccCCcEEEEccCCCchhHH
Q psy16310 185 ALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 185 ~l~~~~dviv~apTGSGKTl~ 205 (1493)
.+..|..+++++|||||||..
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHH
T ss_pred hccCCCEEEEECCCCCCHHHH
Confidence 445688999999999999985
No 353
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=43.55 E-value=10 Score=43.28 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=18.4
Q ss_pred HhhccCCcEEEEccCCCcchhH
Q psy16310 801 SALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 801 ~~l~~~~dvlv~apTGsGKTla 822 (1493)
..+..|..++++||||||||..
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHH
T ss_pred hhccCCCEEEEECCCCCCHHHH
Confidence 3456788999999999999974
No 354
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=43.34 E-value=14 Score=44.58 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=32.5
Q ss_pred EEcccHHHHHHHHHHHHhhcccccceeeEeec-CcchhHHHH--HhhcCCcEEEecCCc
Q psy16310 1358 ILAPTRELAIQVQNHILDAGKYTPVKVACVVG-GMSTEKQLR--ILNKCPHILVATPGA 1413 (1493)
Q Consensus 1358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~ 1413 (1493)
|.....+|-.-++.--.=.|...+|+++|-.- +++...|+. |..+ --++|+-||.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~ 439 (500)
T 3nbx_X 382 ISFERSALEQWLSKGGEIRGKLNGIGFAQKLNLEVDSAQHLVVRDVSL-QGSTLALPGS 439 (500)
T ss_dssp EEEEHHHHHHHHHHCSCCEEEETTCSSEEECEEEECTTSCEEEECTTC-CEEEEECCCC
T ss_pred EEeeHHHHHHHHHcCceeeeeecccccceeeeeeeccccceEEEeecc-ccccccCCCc
Confidence 55567777766666322277888999999653 344444433 2222 2366777774
No 355
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=43.25 E-value=13 Score=38.91 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
.|+-+.++||+|||||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678899999999999864
No 356
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=43.22 E-value=8.4 Score=43.40 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCcchhHhh
Q psy16310 806 RKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~ 824 (1493)
+.++++.||+|+|||.++-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 357
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=42.53 E-value=11 Score=39.31 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.|+-+.++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678899999999999764
No 358
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=42.49 E-value=10 Score=43.88 Aligned_cols=20 Identities=40% Similarity=0.491 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.+.++++++|+|+|||.++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999999753
No 359
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=42.23 E-value=11 Score=39.38 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=17.6
Q ss_pred hccCCcEEEEccCCCchhHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~ 206 (1493)
+..++-++++||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 345778999999999999864
No 360
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=41.79 E-value=12 Score=41.87 Aligned_cols=18 Identities=39% Similarity=0.381 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
+..+++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999764
No 361
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=41.60 E-value=14 Score=38.94 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
.|.-++++||+|||||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999864
No 362
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=41.53 E-value=9.9 Score=44.07 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.+..+++.||+|+|||.++
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3468999999999999864
No 363
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=41.47 E-value=11 Score=38.04 Aligned_cols=17 Identities=29% Similarity=0.182 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHHH
Q psy16310 191 DIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~ 207 (1493)
-++++|++|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999743
No 364
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=41.46 E-value=29 Score=38.70 Aligned_cols=18 Identities=39% Similarity=0.381 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
..+++++||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999874
No 365
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=41.44 E-value=12 Score=38.32 Aligned_cols=20 Identities=25% Similarity=0.106 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCcchhHhhH
Q psy16310 806 RKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~l 825 (1493)
++.++++|++|||||.+.-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46799999999999986543
No 366
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=41.26 E-value=11 Score=42.23 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
++.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999874
No 367
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=41.14 E-value=12 Score=39.30 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.|.-++++||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999764
No 368
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=41.10 E-value=9.9 Score=43.35 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.3
Q ss_pred hhccCCcEEEEccCCCchhHHH
Q psy16310 185 ALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 185 ~l~~~~dviv~apTGSGKTl~~ 206 (1493)
++..+.++++.||+|+|||..+
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 4445789999999999999864
No 369
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=41.04 E-value=13 Score=42.05 Aligned_cols=19 Identities=26% Similarity=0.050 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchhHHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~l 208 (1493)
+.++++||||||||..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3688999999999987543
No 370
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=40.96 E-value=11 Score=41.09 Aligned_cols=17 Identities=29% Similarity=-0.146 Sum_probs=14.1
Q ss_pred cEEEEccCCCcchhHhh
Q psy16310 808 DIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~ 824 (1493)
-++++||||||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999997654
No 371
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=40.94 E-value=13 Score=37.93 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.5
Q ss_pred ccCCcEEEEccCCCchhHHHH
Q psy16310 187 LARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~~ 207 (1493)
..++.++++|++|||||.+.-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 346789999999999999754
No 372
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=40.85 E-value=9.9 Score=42.52 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=29.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHH-hhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~-~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
..|+++.-.....+.|...-. .|... ..+...-..++.+++.||+|+|||..+
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 357777666666666653210 00000 000001123578999999999999764
No 373
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=40.64 E-value=53 Score=38.60 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchhHHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~l 208 (1493)
.++-+++++++|+|||.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345677889999999986443
No 374
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=40.30 E-value=12 Score=43.36 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=17.3
Q ss_pred hccCCcEEEEccCCCchhHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~ 206 (1493)
+..|..+++++|||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345778999999999999863
No 375
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=40.25 E-value=21 Score=41.84 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCCcchhHhhH
Q psy16310 805 ARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~l 825 (1493)
.+.++++.||||||||...-.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 456899999999999976443
No 376
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=40.23 E-value=12 Score=38.00 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
+.-++++|+.|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3568999999999999753
No 377
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=40.02 E-value=12 Score=42.36 Aligned_cols=17 Identities=29% Similarity=0.083 Sum_probs=14.5
Q ss_pred cEEEEccCCCcchhHhh
Q psy16310 808 DIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~ 824 (1493)
-++++||||||||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999997654
No 378
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=39.73 E-value=14 Score=42.09 Aligned_cols=17 Identities=41% Similarity=0.104 Sum_probs=14.6
Q ss_pred cEEEEccCCCchhHHHH
Q psy16310 191 DIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~ 207 (1493)
-++++||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 57899999999998754
No 379
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=39.50 E-value=13 Score=42.71 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
.+..++++||||||||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4558899999999999863
No 380
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=39.35 E-value=11 Score=38.82 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.2
Q ss_pred hccCCcEEEEccCCCchhHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~ 206 (1493)
+..|.-++++||.|||||..+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 345677899999999999864
No 381
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=39.35 E-value=11 Score=41.88 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHH
Q psy16310 190 KDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~ 206 (1493)
+.+++.+|+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34999999999999864
No 382
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=39.31 E-value=18 Score=42.57 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCcchhH
Q psy16310 805 ARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla 822 (1493)
.+.-+++.||||||||..
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 445689999999999975
No 383
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=39.24 E-value=12 Score=38.56 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=13.9
Q ss_pred CcEEEEccCCCchhHH
Q psy16310 190 KDIVGAAETGSGKTLA 205 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~ 205 (1493)
+=++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3489999999999985
No 384
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=39.09 E-value=16 Score=38.91 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=14.1
Q ss_pred cEEEEccCCCcchhHh
Q psy16310 808 DIVGAAETGSGKTLAF 823 (1493)
Q Consensus 808 dvlv~apTGsGKTla~ 823 (1493)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999753
No 385
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=39.05 E-value=12 Score=40.73 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 457999999999999864
No 386
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=38.99 E-value=12 Score=42.71 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.0
Q ss_pred hhccCCcEEEEccCCCcchhHh
Q psy16310 802 ALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 802 ~l~~~~dvlv~apTGsGKTla~ 823 (1493)
.+..+.++++.||+|+|||..+
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 3445789999999999999754
No 387
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=38.96 E-value=16 Score=37.96 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
.|+-++++||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5778899999999999864
No 388
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=38.68 E-value=12 Score=43.51 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=17.1
Q ss_pred hccCCcEEEEccCCCcchhHh
Q psy16310 803 LLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~ 823 (1493)
+..|..++++||||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 346778999999999999753
No 389
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=38.67 E-value=11 Score=37.95 Aligned_cols=17 Identities=29% Similarity=0.182 Sum_probs=14.1
Q ss_pred cEEEEccCCCcchhHhh
Q psy16310 808 DIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~ 824 (1493)
-++++|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 390
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=38.65 E-value=13 Score=42.39 Aligned_cols=17 Identities=41% Similarity=0.104 Sum_probs=14.3
Q ss_pred cEEEEccCCCcchhHhh
Q psy16310 808 DIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~ 824 (1493)
-++++||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 57899999999997653
No 391
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=38.52 E-value=15 Score=38.33 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.|+-++++||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5678899999999999753
No 392
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=38.47 E-value=12 Score=42.37 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=30.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHH-hhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~-~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
..|.++.-...+.+.|...-. .|... +.+.......+.++++||+|+|||+.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 357777767777777654311 11110 011111122467999999999999874
No 393
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=38.40 E-value=15 Score=42.86 Aligned_cols=18 Identities=39% Similarity=0.191 Sum_probs=14.6
Q ss_pred cEEEEccCCCchhHHHHH
Q psy16310 191 DIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~l 208 (1493)
-++|+||||||||..+..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 467899999999987543
No 394
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=38.35 E-value=27 Score=36.71 Aligned_cols=31 Identities=29% Similarity=0.243 Sum_probs=23.7
Q ss_pred cHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 792 t~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
+.-|..++. .+..|.-+.+.||.|||||..+
T Consensus 9 ~~g~~~~l~-~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVD-AIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHH-HHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHH-hccCCCEEEEECCCCCCHHHHH
Confidence 444666775 4567888899999999999754
No 395
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=38.28 E-value=12 Score=40.95 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=28.0
Q ss_pred cccccCCCCHHHHHHHHHCC--CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQKG--FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
..|+++.-.+.+.+.+...- +..|..++... +...+.+++.||+|+|||..+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLG----GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC---------CCCCEEEEECCTTSCHHHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC----CCCCCeEEEECcCCCCHHHHH
Confidence 35677766666666654320 11111111111 112457999999999999764
No 396
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=38.25 E-value=12 Score=43.25 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4689999999999999743
No 397
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=38.18 E-value=15 Score=42.29 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=16.2
Q ss_pred hccCCc--EEEEccCCCcchhHh
Q psy16310 803 LLARKD--IVGAAETGSGKTLAF 823 (1493)
Q Consensus 803 l~~~~d--vlv~apTGsGKTla~ 823 (1493)
+.+|.+ +++.|+||||||...
T Consensus 80 ~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 80 YENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHCCEEEEEEECCTTSSHHHHH
T ss_pred ccCCceeEEEeeCCCCCCCCEEE
Confidence 334666 689999999999763
No 398
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=38.10 E-value=26 Score=36.91 Aligned_cols=22 Identities=18% Similarity=-0.129 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGIPI 210 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~lpi 210 (1493)
|+=.+++++-|||||...+--+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a 49 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRV 49 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 4445689999999998854433
No 399
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=38.09 E-value=13 Score=43.36 Aligned_cols=17 Identities=41% Similarity=0.239 Sum_probs=14.0
Q ss_pred cEEEEccCCCcchhHhh
Q psy16310 808 DIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~ 824 (1493)
-++++||||||||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 46889999999997643
No 400
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=37.96 E-value=10 Score=39.06 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.0
Q ss_pred hccCCcEEEEccCCCcchhHh
Q psy16310 803 LLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~ 823 (1493)
+..|.-+++.||.|||||..+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 345678899999999999753
No 401
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=37.96 E-value=13 Score=42.72 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCcchhH
Q psy16310 805 ARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla 822 (1493)
.+.-++++||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455899999999999975
No 402
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=37.95 E-value=13 Score=42.25 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=30.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHH-hhhhhhhccCCcEEEEccCCCchhHHHH
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~-~~i~~~l~~~~dviv~apTGSGKTl~~~ 207 (1493)
..|++++-...+.+.|.+.-. .|.+. +.+.......+.++++||+|+|||+.+-
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 357777666666666643210 01110 1111111234689999999999998743
No 403
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=37.92 E-value=17 Score=38.71 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHH
Q psy16310 191 DIVGAAETGSGKTLAF 206 (1493)
Q Consensus 191 dviv~apTGSGKTl~~ 206 (1493)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999864
No 404
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=37.81 E-value=17 Score=37.85 Aligned_cols=20 Identities=25% Similarity=0.089 Sum_probs=16.7
Q ss_pred ccCCcEEEEccCCCchhHHH
Q psy16310 187 LARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~ 206 (1493)
..|.-++++||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999864
No 405
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=37.63 E-value=11 Score=43.53 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCcchhHhh
Q psy16310 806 RKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~ 824 (1493)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4689999999999997643
No 406
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=37.59 E-value=13 Score=39.03 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=17.4
Q ss_pred hccCCcEEEEccCCCcchhHh
Q psy16310 803 LLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~ 823 (1493)
+..|+-++++||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346778999999999999754
No 407
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=37.27 E-value=20 Score=37.43 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHH
Q psy16310 190 KDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~ 206 (1493)
..++++||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 36999999999999864
No 408
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=37.27 E-value=13 Score=37.80 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCcchhHhh
Q psy16310 806 RKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~ 824 (1493)
+.-++++|+.|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3568999999999997643
No 409
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=37.24 E-value=18 Score=37.70 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=16.5
Q ss_pred ccCCcEEEEccCCCchhHHH
Q psy16310 187 LARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~ 206 (1493)
..|.-+.+.||+|||||...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35667889999999999864
No 410
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=37.15 E-value=16 Score=36.87 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
+..++++|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999864
No 411
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=37.02 E-value=14 Score=37.69 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.2
Q ss_pred ccCCcEEEEccCCCcchhHhh
Q psy16310 804 LARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~~ 824 (1493)
..+..++++|++|||||.+.-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 346789999999999998643
No 412
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=36.92 E-value=16 Score=38.12 Aligned_cols=20 Identities=25% Similarity=0.089 Sum_probs=16.6
Q ss_pred ccCCcEEEEccCCCcchhHh
Q psy16310 804 LARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~ 823 (1493)
..|.-+++.||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35678899999999999754
No 413
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=36.91 E-value=12 Score=38.57 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=13.7
Q ss_pred CcEEEEccCCCcchhH
Q psy16310 807 KDIVGAAETGSGKTLA 822 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla 822 (1493)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3589999999999975
No 414
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=36.90 E-value=14 Score=37.91 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.+..++++|+.|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45689999999999999753
No 415
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=36.46 E-value=14 Score=41.30 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
....++++||+|+|||..+-
T Consensus 35 ~p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34578999999999998643
No 416
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=36.39 E-value=59 Score=38.25 Aligned_cols=20 Identities=30% Similarity=0.194 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCcchhHhh
Q psy16310 805 ARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~ 824 (1493)
.++-+++++++|+|||....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34567788999999997644
No 417
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=36.25 E-value=19 Score=38.71 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCcchhHhh
Q psy16310 805 ARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~ 824 (1493)
.|.-+++.|++|+|||...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l 48 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHH
Confidence 45788999999999996543
No 418
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=36.23 E-value=15 Score=42.68 Aligned_cols=19 Identities=42% Similarity=0.513 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
..+++++||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5689999999999998753
No 419
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=35.98 E-value=17 Score=41.70 Aligned_cols=20 Identities=30% Similarity=0.234 Sum_probs=16.0
Q ss_pred hccCCc--EEEEccCCCchhHH
Q psy16310 186 LLARKD--IVGAAETGSGKTLA 205 (1493)
Q Consensus 186 l~~~~d--viv~apTGSGKTl~ 205 (1493)
+.+|.+ +++.|.||||||..
T Consensus 80 ~~~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 80 YENGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HHHCCEEEEEEECCTTSSHHHH
T ss_pred ccCCceeEEEeeCCCCCCCCEE
Confidence 334666 68899999999987
No 420
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=35.88 E-value=28 Score=36.53 Aligned_cols=31 Identities=29% Similarity=0.243 Sum_probs=23.4
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
+.-|..++. .+..|.-+.+.+|.|||||..+
T Consensus 9 ~~g~~~~l~-~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVD-AIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHH-HHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHH-hccCCCEEEEECCCCCCHHHHH
Confidence 334556665 4667888889999999999863
No 421
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=35.80 E-value=15 Score=42.27 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
.+.++++||+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4689999999999998753
No 422
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=35.77 E-value=14 Score=37.55 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=17.2
Q ss_pred ccCCcEEEEccCCCchhHHHH
Q psy16310 187 LARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~~ 207 (1493)
..|.-+.++||.|||||..+-
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 456678899999999998754
No 423
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=35.70 E-value=13 Score=41.71 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
...+++.||+|+|||..+
T Consensus 36 p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CSEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999764
No 424
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=35.47 E-value=17 Score=37.79 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=16.3
Q ss_pred ccCCcEEEEccCCCcchhHh
Q psy16310 804 LARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~ 823 (1493)
..|.-+.+.||+|||||...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35667889999999999753
No 425
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=35.34 E-value=15 Score=37.17 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHH
Q psy16310 191 DIVGAAETGSGKTLAF 206 (1493)
Q Consensus 191 dviv~apTGSGKTl~~ 206 (1493)
-++++|+.|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999974
No 426
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=35.06 E-value=12 Score=37.88 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=17.0
Q ss_pred ccCCcEEEEccCCCcchhHhh
Q psy16310 804 LARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~~ 824 (1493)
..|.-+.++||.|||||..+-
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 456678899999999997654
No 427
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=34.93 E-value=14 Score=42.86 Aligned_cols=19 Identities=42% Similarity=0.513 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCcchhHhh
Q psy16310 806 RKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~ 824 (1493)
...+++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4689999999999997643
No 428
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=34.77 E-value=35 Score=38.51 Aligned_cols=24 Identities=25% Similarity=0.051 Sum_probs=18.6
Q ss_pred hhccCCcEEEEccCCCchhHHHHH
Q psy16310 185 ALLARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 185 ~l~~~~dviv~apTGSGKTl~~~l 208 (1493)
-+..|.-++++|++|+|||..++-
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ 87 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALK 87 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHH
Confidence 345577899999999999976433
No 429
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=34.62 E-value=25 Score=37.03 Aligned_cols=23 Identities=17% Similarity=-0.155 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCcchhHhhHHHH
Q psy16310 806 RKDIVGAAETGSGKTLAFGIPIL 828 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~lpil 828 (1493)
|+=.++.|+.|||||.+.+--+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~ 50 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVR 50 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 44456899999999987554444
No 430
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=34.55 E-value=15 Score=42.48 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=28.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhh----ccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL----LARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l----~~~~dvlv~apTGsGKTla~ 823 (1493)
..|+++.-...+.+.|...-. .|.. .|..+ ...+.+++.||+|+|||+.+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~---~~~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTH---HHHH---CGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 457777655556666643210 0000 11111 22467999999999999764
No 431
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=34.26 E-value=13 Score=45.27 Aligned_cols=23 Identities=9% Similarity=-0.074 Sum_probs=17.7
Q ss_pred hccCCcEEEEccCCCcchhHhhH
Q psy16310 803 LLARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~l 825 (1493)
+..|.-+++.|++|+|||...+-
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~ 261 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQ 261 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHH
Confidence 33567789999999999975443
No 432
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=34.24 E-value=32 Score=50.73 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=33.6
Q ss_pred CHHHHHHHHHCCCCCCcHHH-HhhHH--HhhccCCcEEEEccCCCcchhHhhH
Q psy16310 776 PETIIRALYQKGFKTPTKIQ-SMVMP--SALLARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 776 ~~~l~~~l~~~g~~~pt~iQ-~~~i~--~~l~~~~dvlv~apTGsGKTla~~l 825 (1493)
...+.+.+.+.|+. |+|.+ .+++. ..+.-++.++++||||||||.++-.
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 35566777788885 45544 34442 2234567899999999999998653
No 433
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=34.23 E-value=15 Score=37.61 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCcchhHhh
Q psy16310 805 ARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~ 824 (1493)
.+..++++|+.|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45689999999999998643
No 434
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=34.23 E-value=19 Score=38.14 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=16.5
Q ss_pred hccCCcEEEEccCCCcchhHh
Q psy16310 803 LLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~ 823 (1493)
+..|+-+.++||+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 456788999999999999753
No 435
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=34.20 E-value=22 Score=37.60 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=16.6
Q ss_pred hccCCcEEEEccCCCchhHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~ 206 (1493)
+..|+-+.++||+|||||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 446788999999999999863
No 436
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=34.10 E-value=18 Score=42.71 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchhHH
Q psy16310 188 ARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~ 205 (1493)
.+.-+++++|||||||..
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 355688999999999986
No 437
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.90 E-value=14 Score=37.89 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCCchhHHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~l 208 (1493)
.|..++++|+.|||||..+-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 355789999999999987543
No 438
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=33.66 E-value=17 Score=42.04 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
..+.++++||+|+|||..+-
T Consensus 116 ~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999998753
No 439
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=33.57 E-value=22 Score=32.75 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=32.6
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCH
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~ 1113 (1493)
..+++|||.+-..+...+..|...|+++..+.|++..
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 4689999999988999999999999999999998643
No 440
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=33.50 E-value=14 Score=41.70 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999764
No 441
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=33.47 E-value=17 Score=36.44 Aligned_cols=17 Identities=12% Similarity=-0.128 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHHH
Q psy16310 191 DIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~ 207 (1493)
.++++|+.|||||.+.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999753
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=33.43 E-value=26 Score=37.55 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=17.5
Q ss_pred ccCCcEEEEccCCCchhHHHHH
Q psy16310 187 LARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~~l 208 (1493)
..|.-++++|++|+|||..++-
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~ 49 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHH
Confidence 3467889999999999976443
No 443
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=33.40 E-value=17 Score=41.42 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHH
Q psy16310 190 KDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~ 206 (1493)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 58999999999999874
No 444
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=33.17 E-value=20 Score=36.01 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
+..+++.||.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999764
No 445
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=33.02 E-value=15 Score=44.03 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCcchhHhh
Q psy16310 805 ARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~ 824 (1493)
.++.+++.||+|+|||..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 34689999999999997653
No 446
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=32.96 E-value=16 Score=42.26 Aligned_cols=19 Identities=37% Similarity=0.357 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
..+.+++.||+|+|||..+
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3568999999999999764
No 447
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=32.76 E-value=39 Score=34.99 Aligned_cols=27 Identities=26% Similarity=0.140 Sum_probs=21.8
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFGIPILTGI 214 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~lpil~~l 214 (1493)
....+++..++|.|||.+++-.++..+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~ 53 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV 53 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999877676555
No 448
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=32.70 E-value=11 Score=41.40 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4579999999999998753
No 449
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=32.68 E-value=15 Score=41.43 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
...++++||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999874
No 450
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=32.67 E-value=18 Score=36.94 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
+.-++++|+.|||||...-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999998743
No 451
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=32.62 E-value=16 Score=37.07 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=13.7
Q ss_pred cEEEEccCCCcchhHh
Q psy16310 808 DIVGAAETGSGKTLAF 823 (1493)
Q Consensus 808 dvlv~apTGsGKTla~ 823 (1493)
-++++|+.|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999764
No 452
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=32.62 E-value=20 Score=42.87 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.++.+++.+|+|+|||..+-
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 35689999999999998754
No 453
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=32.59 E-value=15 Score=44.14 Aligned_cols=51 Identities=25% Similarity=0.275 Sum_probs=28.3
Q ss_pred ccccCCCCHHHHHHHHHC--CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHh
Q psy16310 769 EWVKFNIPETIIRALYQK--GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
.|+++.-.....+.+.+. .+..|..++...+ .-.+.+++.||+|+|||+.+
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~----~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGA----RMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC----CCCSEEEEECCTTSSHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCC----CCCCeEEEECCCCCCHHHHH
Confidence 466666555555555432 1222222221111 12356999999999999764
No 454
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=32.23 E-value=25 Score=36.02 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHHH
Q psy16310 190 KDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~ 206 (1493)
+-+.+.||+|||||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45788999999999863
No 455
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=32.22 E-value=19 Score=38.17 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=16.6
Q ss_pred hccCCcEEEEccCCCchhHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~ 206 (1493)
+..|.-++++||.|||||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 346778899999999999863
No 456
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=32.00 E-value=22 Score=36.62 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=17.6
Q ss_pred hccCCcEEEEccCCCchhHHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~~ 207 (1493)
+..+.-++++|+.|||||.+.-
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHH
Confidence 3345679999999999999753
No 457
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=31.90 E-value=22 Score=36.49 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=13.9
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34788999999999753
No 458
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=31.87 E-value=26 Score=36.58 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=14.8
Q ss_pred cEEEEccCCCchhHHHHH
Q psy16310 191 DIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~l 208 (1493)
-.+++|+.|||||+.++.
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 467899999999997544
No 459
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=31.63 E-value=17 Score=36.52 Aligned_cols=17 Identities=12% Similarity=-0.128 Sum_probs=14.3
Q ss_pred cEEEEccCCCcchhHhh
Q psy16310 808 DIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~ 824 (1493)
-+++.|+.|||||.+.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997643
No 460
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=31.62 E-value=17 Score=40.70 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchhHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~ 207 (1493)
..++++||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 479999999999998753
No 461
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=31.61 E-value=10 Score=41.64 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCcchhHhh
Q psy16310 806 RKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~ 824 (1493)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4579999999999997643
No 462
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=31.48 E-value=24 Score=37.00 Aligned_cols=23 Identities=17% Similarity=-0.159 Sum_probs=18.1
Q ss_pred hccCCcEEEEccCCCchhHHHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~~l 208 (1493)
+..|.-+++.+|+|+|||..+..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHH
Confidence 33567789999999999987543
No 463
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=31.41 E-value=21 Score=37.37 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHH
Q psy16310 190 KDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~ 206 (1493)
+.+++.+|.|+|||..+
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36999999999999875
No 464
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=31.39 E-value=22 Score=44.10 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=14.7
Q ss_pred cEEEEccCCCchhHHH
Q psy16310 191 DIVGAAETGSGKTLAF 206 (1493)
Q Consensus 191 dviv~apTGSGKTl~~ 206 (1493)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999863
No 465
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=31.21 E-value=16 Score=40.98 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=15.2
Q ss_pred CcEEEEccCCCcchhHhh
Q psy16310 807 KDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~ 824 (1493)
..+++.||+|+|||.++-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 479999999999997643
No 466
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=31.20 E-value=22 Score=42.71 Aligned_cols=18 Identities=39% Similarity=0.462 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
.+.+++++|+|+|||+.+
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999874
No 467
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.18 E-value=25 Score=40.17 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHH
Q psy16310 190 KDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~ 206 (1493)
.++++.||+|+|||..+
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999864
No 468
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=31.18 E-value=19 Score=36.43 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
+..++++++.|||||..+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5578899999999998743
No 469
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=30.84 E-value=20 Score=40.95 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
...+++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 347999999999999764
No 470
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=30.72 E-value=21 Score=37.06 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.+.-++++||.|||||..+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46788999999999998743
No 471
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=30.69 E-value=17 Score=36.71 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCcchhHhh
Q psy16310 805 ARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~ 824 (1493)
.|.-++++|+.|||||..+-
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35678999999999997643
No 472
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=30.67 E-value=19 Score=37.02 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
+.-++++|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999999743
No 473
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=30.66 E-value=30 Score=30.81 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=30.9
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCC
Q psy16310 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112 (1493)
Q Consensus 1078 ~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~ 1112 (1493)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 57999999988899999999999999778888874
No 474
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=30.31 E-value=16 Score=41.84 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 347999999999999864
No 475
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=30.19 E-value=19 Score=36.80 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
+.-+++.|+.|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999764
No 476
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=30.14 E-value=21 Score=36.81 Aligned_cols=20 Identities=30% Similarity=0.165 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.+.-++++|+.|||||.++-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678999999999998753
No 477
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.08 E-value=25 Score=40.19 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.6
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999764
No 478
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=30.07 E-value=31 Score=36.49 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=17.5
Q ss_pred hccCCcEEEEccCCCchhHHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~~ 207 (1493)
+..|.-+++.+|+|+|||....
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHH
Confidence 3457788999999999997643
No 479
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=30.02 E-value=20 Score=37.30 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.|.-+++.||.|||||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 480
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=29.95 E-value=20 Score=38.23 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=13.1
Q ss_pred hccCCcEEEEccCCCcchhHh
Q psy16310 803 LLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~ 823 (1493)
+..|.-+.+.||+|||||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345777889999999999764
No 481
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=29.81 E-value=50 Score=39.84 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=17.1
Q ss_pred ccCCcEEEEccCCCcchhHhh
Q psy16310 804 LARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~~ 824 (1493)
..+..+++.|+||||||.+.-
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHH
Confidence 346789999999999997643
No 482
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.79 E-value=41 Score=49.61 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHH-hhhh--hhhccCCcEEEEccCCCchhHHHH
Q psy16310 158 IPETIIRALYQKGFKTPTKIQS-MVMP--SALLARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 158 l~~~l~~~l~~~g~~~pt~iQ~-~~i~--~~l~~~~dviv~apTGSGKTl~~~ 207 (1493)
+...+.+.+.++|+. |.+.+. .++. ..+.-++-++++||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 445667777888885 555554 3332 133446789999999999999864
No 483
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=29.65 E-value=22 Score=35.04 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhHH
Q psy16310 191 DIVGAAETGSGKTLA 205 (1493)
Q Consensus 191 dviv~apTGSGKTl~ 205 (1493)
-.++++|+|||||.+
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 457799999999987
No 484
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=29.49 E-value=31 Score=36.97 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=19.1
Q ss_pred hhccCCcEEEEccCCCchhHHHHH
Q psy16310 185 ALLARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 185 ~l~~~~dviv~apTGSGKTl~~~l 208 (1493)
-+..|.-+.+.+|+|||||.....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHH
Confidence 345678899999999999986544
No 485
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=29.41 E-value=34 Score=41.33 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=19.4
Q ss_pred ccCCcEEEEccCCCchhHHHHHHHHH
Q psy16310 187 LARKDIVGAAETGSGKTLAFGIPILT 212 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~~lpil~ 212 (1493)
..+.+++|.+.||||||.+.-..++.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999874443333
No 486
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=29.34 E-value=23 Score=36.75 Aligned_cols=20 Identities=30% Similarity=0.027 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.+.-++++|+.|||||.+.-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45678999999999999743
No 487
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=29.32 E-value=27 Score=39.28 Aligned_cols=17 Identities=35% Similarity=0.288 Sum_probs=14.8
Q ss_pred cEEEEccCCCchhHHHH
Q psy16310 191 DIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~ 207 (1493)
.+++.||+|+|||..+-
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999998743
No 488
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=29.30 E-value=27 Score=39.25 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=14.3
Q ss_pred cEEEEccCCCcchhHh
Q psy16310 808 DIVGAAETGSGKTLAF 823 (1493)
Q Consensus 808 dvlv~apTGsGKTla~ 823 (1493)
.+++.||+|+|||..+
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999764
No 489
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=29.29 E-value=26 Score=36.56 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=25.8
Q ss_pred eeEEEecccchhccCC--ChhHHHHHHHHhcccCCCCCceEEEEecc
Q psy16310 954 INYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTFVFSAT 998 (1493)
Q Consensus 954 l~~lVlDEah~ll~~~--~~~~l~~il~~l~~~~~~~~~q~ll~SAT 998 (1493)
-.+|||||||.++... ..+. ..++..+.. ......++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~-~rll~~l~~-~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKI-PENVQWLNT-HRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCC-CHHHHGGGG-TTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchh-HHHHHHHHh-cCcCCeEEEEECCC
Confidence 3689999999985322 1122 235555543 23456788888766
No 490
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=29.26 E-value=24 Score=37.04 Aligned_cols=21 Identities=19% Similarity=-0.187 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCcchhHhhH
Q psy16310 805 ARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~l 825 (1493)
.|.-+++.||+|+|||..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 567789999999999976443
No 491
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=29.15 E-value=22 Score=36.95 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchhHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~ 207 (1493)
.-++++|+.|||||..+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999999753
No 492
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=29.12 E-value=66 Score=37.49 Aligned_cols=20 Identities=15% Similarity=-0.074 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.|.-+++++|+|||||....
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHH
Confidence 35678899999999998754
No 493
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=29.05 E-value=16 Score=37.25 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCcchhHhh
Q psy16310 805 ARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~ 824 (1493)
.|..+++.|+.|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34578999999999997643
No 494
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=28.92 E-value=31 Score=36.17 Aligned_cols=31 Identities=16% Similarity=-0.008 Sum_probs=22.0
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchhHHHH
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~ 207 (1493)
++.+.... .+..+..++++|+.|||||..+-
T Consensus 13 ~~~~r~~~--~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTEL--RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHHH--HTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhcc--cCCCCCEEEEECCCCCCHHHHHH
Confidence 44555553 24456788999999999998643
No 495
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=28.92 E-value=23 Score=37.71 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
....++++|++|||||...-
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 34578999999999999753
No 496
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=28.87 E-value=21 Score=37.37 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHHHhhcc---CCcEEEEccCCCcchhHh
Q psy16310 778 TIIRALYQKGFKTPTKIQSMVMPSALLA---RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 778 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~~---~~dvlv~apTGsGKTla~ 823 (1493)
.|.+-|.-.|+. |... ..++...+.+ .+.+++.||.|+|||..+
T Consensus 29 ~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 455666555532 2222 3333322322 235999999999999764
No 497
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=28.79 E-value=26 Score=36.66 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=0.0
Q ss_pred hccCCcEEEEccCCCcchhHhhHHH
Q psy16310 803 LLARKDIVGAAETGSGKTLAFGIPI 827 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~lpi 827 (1493)
+..|.-+.+.||+|||||..+-+.+
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
No 498
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=28.66 E-value=22 Score=39.52 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
+.-++++||.|||||..+-
T Consensus 33 ~~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp CEEEEEECCTTSCTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998753
No 499
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=28.60 E-value=22 Score=42.33 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=30.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHH-hhhhhhhccCCcEEEEccCCCchhHHHH
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQS-MVMPSALLARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~-~~i~~~l~~~~dviv~apTGSGKTl~~~ 207 (1493)
..|+++.-...+.+.|...-. .|... ..+.......+.++++||+|+|||+.+-
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 357777656666666654210 01110 0111112234689999999999998743
No 500
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=28.54 E-value=26 Score=37.14 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=16.4
Q ss_pred hccCCcEEEEccCCCcchhHh
Q psy16310 803 LLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~ 823 (1493)
+..|.-++++||.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 346778899999999999753
Done!