Your job contains 1 sequence.
>psy16310
KNKTVVIGAPKTTAKVKDGGVKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADK
EKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQ
KKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSM
VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE
ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE
KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI
LDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL
KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL
YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI
LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA
TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN
LQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVN
KTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETII
RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE
EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG
KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID
ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS
KGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT
LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG
LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV
DLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLI
ESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWL
EKAAKDMDIIIDDENLIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYT
PVKVACVVGGMSTEKQLRILNKCPHILVATPGALSLKRIDLAKSIEYLESKIKKNRPDNW
LEKAAKDMDIIIDDENLIQPKANSRENALMSKALVSKRKELQSLLGKSVQSYQ
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16310
(1493 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0034496 - symbol:CG9143 species:7227 "Drosophila m... 975 1.9e-124 3
UNIPROTKB|F1SCG7 - symbol:LOC100620190 "Uncharacterized p... 891 1.9e-110 4
MGI|MGI:1351337 - symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) bo... 895 3.8e-109 3
UNIPROTKB|A6H7B6 - symbol:DDX24 "DDX24 protein" species:9... 900 4.7e-109 3
UNIPROTKB|G3V529 - symbol:DDX24 "ATP-dependent RNA helica... 899 6.3e-109 3
UNIPROTKB|Q9GZR7 - symbol:DDX24 "ATP-dependent RNA helica... 899 6.3e-109 3
RGD|727929 - symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box pol... 891 1.6e-108 3
UNIPROTKB|E2RIC4 - symbol:DDX24 "Uncharacterized protein"... 896 3.2e-108 3
UNIPROTKB|F1NJ62 - symbol:F1NJ62 "Uncharacterized protein... 939 4.0e-106 2
DICTYBASE|DDB_G0281841 - symbol:ddx24 "DEAD/DEAH box heli... 574 1.2e-96 2
UNIPROTKB|F5GYL3 - symbol:DDX24 "ATP-dependent RNA helica... 899 3.9e-94 2
WB|WBGene00018890 - symbol:F55F8.2 species:6239 "Caenorha... 750 3.1e-93 3
POMBASE|SPBC4F6.07c - symbol:SPBC4F6.07c "ATP-dependent R... 698 1.9e-81 2
UNIPROTKB|I3LKU6 - symbol:LOC100620190 "Uncharacterized p... 816 1.3e-80 1
CGD|CAL0005900 - symbol:MAK5 species:5476 "Candida albica... 619 2.8e-73 3
TAIR|locus:2086775 - symbol:AT3G16840 species:3702 "Arabi... 555 2.6e-55 3
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 316 6.3e-53 3
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 312 8.7e-53 3
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 317 5.8e-52 3
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 315 2.1e-51 3
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 311 2.2e-51 3
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 309 4.7e-51 3
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 308 6.5e-51 3
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 308 7.5e-51 3
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 311 2.0e-50 3
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 295 3.0e-50 3
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 307 5.5e-50 3
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 305 5.7e-50 3
ASPGD|ASPL0000042587 - symbol:AN1750 species:162425 "Emer... 531 1.7e-49 2
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 304 6.6e-49 3
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 309 4.1e-48 3
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 314 3.2e-47 3
SGD|S000000346 - symbol:MAK5 "Essential nucleolar protein... 390 2.7e-45 4
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-... 273 1.0e-44 3
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 261 3.0e-44 3
POMBASE|SPBC543.06c - symbol:dbp8 "ATP-dependent RNA heli... 264 6.7e-42 3
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 254 8.7e-42 3
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme... 249 1.0e-41 4
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 226 1.4e-41 3
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 256 2.0e-41 3
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 234 5.0e-41 3
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 234 5.0e-41 3
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ... 235 1.9e-40 3
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep... 235 1.9e-40 3
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 244 2.3e-40 3
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 244 2.3e-40 3
UNIPROTKB|Q9Y6V7 - symbol:DDX49 "Probable ATP-dependent R... 246 4.8e-40 3
UNIPROTKB|F1S7D9 - symbol:DDX49 "Uncharacterized protein"... 245 6.2e-40 3
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 226 7.2e-40 3
TAIR|locus:2032910 - symbol:RH36 "RNA helicase 36" specie... 266 7.7e-40 3
WB|WBGene00022378 - symbol:Y94H6A.5 species:6239 "Caenorh... 238 8.0e-40 3
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"... 239 1.7e-39 3
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 231 2.0e-39 3
SGD|S000001212 - symbol:DBP8 "ATPase, putative RNA helica... 259 2.0e-39 3
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 220 2.4e-39 3
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 220 2.4e-39 3
RGD|1311124 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box po... 236 2.6e-39 3
UNIPROTKB|Q81JK1 - symbol:BAS5307 "ATP-dependent RNA heli... 219 2.6e-39 3
TIGR_CMR|BA_5703 - symbol:BA_5703 "ATP-dependent RNA heli... 219 2.6e-39 3
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 223 2.9e-39 3
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 223 2.9e-39 3
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 223 2.9e-39 3
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 223 2.9e-39 3
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 223 2.9e-39 3
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 223 3.1e-39 3
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"... 244 3.4e-39 3
GENEDB_PFALCIPARUM|PFB0860c - symbol:PFB0860c "RNA helica... 234 3.5e-39 3
UNIPROTKB|O96264 - symbol:PFB0860c "DEAD/DEAH box helicas... 234 3.5e-39 3
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 221 4.7e-39 3
UNIPROTKB|E2RBM7 - symbol:DDX49 "Uncharacterized protein"... 237 5.9e-39 3
WB|WBGene00019219 - symbol:H20J04.4 species:6239 "Caenorh... 232 1.5e-38 3
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 236 1.6e-38 3
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 217 2.0e-38 3
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 217 2.0e-38 3
MGI|MGI:2136689 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) bo... 229 2.1e-38 3
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 212 2.5e-38 3
FB|FBgn0010220 - symbol:Dbp45A "DEAD box protein 45A" spe... 242 3.7e-38 3
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 240 6.2e-38 3
UNIPROTKB|Q9KU63 - symbol:VC_0660 "ATP-dependent RNA heli... 229 8.9e-38 3
TIGR_CMR|VC_0660 - symbol:VC_0660 "ATP-dependent RNA heli... 229 8.9e-38 3
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 219 9.5e-38 3
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 232 1.2e-37 3
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 240 1.2e-37 3
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he... 209 1.3e-37 4
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 223 1.6e-37 3
UNIPROTKB|Q485I3 - symbol:dbpA "ATP-dependent RNA helicas... 228 1.9e-37 3
TIGR_CMR|CPS_1540 - symbol:CPS_1540 "ATP-dependent RNA he... 228 1.9e-37 3
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 230 2.3e-37 3
CGD|CAL0005460 - symbol:DBP3 species:5476 "Candida albica... 211 3.3e-37 3
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 221 3.7e-37 3
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 230 6.7e-37 3
ASPGD|ASPL0000069536 - symbol:AN7424 species:162425 "Emer... 203 8.5e-37 3
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 223 9.2e-37 3
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 240 1.1e-36 3
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 223 1.2e-36 3
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 216 1.3e-36 3
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen... 219 1.3e-36 3
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende... 219 1.3e-36 3
GENEDB_PFALCIPARUM|PF14_0429 - symbol:PF14_0429 "RNA heli... 229 1.4e-36 4
UNIPROTKB|Q8IL21 - symbol:PF14_0429 "RNA helicase, putati... 229 1.4e-36 4
WARNING: Descriptions of 777 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0034496 [details] [associations]
symbol:CG9143 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14805 GeneTree:ENSGT00550000074847
OMA:DAYLYYI EMBL:BT010296 RefSeq:NP_611467.1 UniGene:Dm.22095
SMR:Q6NQY9 STRING:Q6NQY9 EnsemblMetazoa:FBtr0086304 GeneID:37296
KEGG:dme:Dmel_CG9143 UCSC:CG9143-RA FlyBase:FBgn0034496
InParanoid:Q6NQY9 OrthoDB:EOG4VQ84N GenomeRNAi:37296 NextBio:802980
Uniprot:Q6NQY9
Length = 813
Score = 975 (348.3 bits), Expect = 1.9e-124, Sum P(3) = 1.9e-124
Identities = 189/385 (49%), Positives = 263/385 (68%)
Query: 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923
++ E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ R+L
Sbjct: 328 SDAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVL 387
Query: 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
+CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E GHF EL+++L +
Sbjct: 388 RQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNS 447
Query: 984 TETSQ-PRQTFVFSATLT--HXXXXXXXXXXXXXX-XXXXXXXDPSIKRLQDLLNIKSPK 1039
E + RQ FV+SATLT H D I+ L + L I PK
Sbjct: 448 DEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIESLIEELGISQPK 507
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 1099
IVD+T +TLTES++LC D KD +LYYFI +HPGRT+VFCNSI VKRL L +
Sbjct: 508 IVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGL 567
Query: 1100 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EHVIHY VPRTSE
Sbjct: 568 LDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSE 627
Query: 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1219
Y+HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E + +++R+
Sbjct: 628 NYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPILERFMGAVRERV 687
Query: 1220 DLAKSIEYLESKIKKNRPDN-WLHR 1243
+LA+ ++ E K+K+ + + W+ +
Sbjct: 688 NLARDLDKEELKLKRVQSERGWMKK 712
Score = 539 (194.8 bits), Expect = 9.4e-101, Sum P(4) = 9.4e-101
Identities = 103/167 (61%), Positives = 128/167 (76%)
Query: 490 RTLCEEIQDL---LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 546
+T+ ++I+ L L I PKIVD+T +TLTES++LC D KD +LYYFI +HPGR
Sbjct: 488 QTVDQKIESLIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGR 547
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
T+VFCNSI VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAAR
Sbjct: 548 TIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAAR 607
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
GLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+TV+ +E E+
Sbjct: 608 GLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEV 654
Score = 339 (124.4 bits), Expect = 9.4e-101, Sum P(4) = 9.4e-101
Identities = 66/160 (41%), Positives = 102/160 (63%)
Query: 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306
++ E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ R+L
Sbjct: 328 SDAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVL 387
Query: 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 366
+CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E GHF EL+++L +
Sbjct: 388 RQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNS 447
Query: 367 TETSQ-PRQTMIESGHFPELKNILDRVTMTETSQPRQTFV 405
E + RQ + S + ++ D + + R FV
Sbjct: 448 DEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGK-RPKFV 486
Score = 226 (84.6 bits), Expect = 1.9e-124, Sum P(3) = 1.9e-124
Identities = 44/82 (53%), Positives = 62/82 (75%)
Query: 134 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
EL+ + T EDM + W +P +I+RAL ++GFKTPT+IQ++ +P+A+ +KDI+
Sbjct: 202 ELVPISTGEAEDM----SAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDIL 257
Query: 194 GAAETGSGKTLAFGIPILTGIV 215
GAAETGSGKTLAFGIP+L GI+
Sbjct: 258 GAAETGSGKTLAFGIPMLAGIM 279
Score = 226 (84.6 bits), Expect = 1.9e-124, Sum P(3) = 1.9e-124
Identities = 44/82 (53%), Positives = 62/82 (75%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
EL+ + T EDM + W +P +I+RAL ++GFKTPT+IQ++ +P+A+ +KDI+
Sbjct: 202 ELVPISTGEAEDM----SAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDIL 257
Query: 811 GAAETGSGKTLAFGIPILTGIV 832
GAAETGSGKTLAFGIP+L GI+
Sbjct: 258 GAAETGSGKTLAFGIPMLAGIM 279
Score = 216 (81.1 bits), Expect = 1.3e-62, Sum P(3) = 1.3e-62
Identities = 45/152 (29%), Positives = 91/152 (59%)
Query: 1180 LIESDEIPLYIKMFNSLE-KKVD-LPDFPIDESVLSLIKKR-IDLAKSIEYLESKIKKNR 1236
L++ + +PL+ M K ++ D P + + + R +D+ + ++ +
Sbjct: 567 LLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTS 626
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
+N++HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E + +++
Sbjct: 627 -ENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPILERFMGAVRE 685
Query: 1297 RIDLAKSIEYLESKIKKNRPDN-WLEKAAKDM 1327
R++LA+ ++ E K+K+ + + W++K A++M
Sbjct: 686 RVNLARDLDKEELKLKRVQSERGWMKKHAEEM 717
Score = 212 (79.7 bits), Expect = 4.1e-32, Sum P(3) = 4.1e-32
Identities = 52/127 (40%), Positives = 68/127 (53%)
Query: 376 MIESGHFPELKNILDRVTMTETSQ-PRQTFVFSATLT--HXXXXXXXXXXXXXX-XXXXX 431
M+E GHF EL+++L + E + RQ FV+SATLT H
Sbjct: 429 MVEKGHFEELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQ 488
Query: 432 XXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
D I+ L + L I PKIVD+T +TLTES++LC D KD +LYYFI +HPGRT
Sbjct: 489 TVDQKIESLIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRT 548
Query: 492 L--CEEI 496
+ C I
Sbjct: 549 IVFCNSI 555
Score = 189 (71.6 bits), Expect = 7.1e-29, Sum P(2) = 7.1e-29
Identities = 44/121 (36%), Positives = 70/121 (57%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ R+L +CP I+VATPG L
Sbjct: 344 LVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGRLWE 403
Query: 1417 KRIDLAKSIEYLE--SKIKKNRPDNWLEKAA-KDMXXXXXXENLIQPKANSRENALMSKA 1473
+ + +E S + + D +EK +++ N + K + R+N + S
Sbjct: 404 LYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQNFVYSAT 463
Query: 1474 L 1474
L
Sbjct: 464 L 464
Score = 57 (25.1 bits), Expect = 1.9e-124, Sum P(3) = 1.9e-124
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 1406 ILVATPGALSLKRIDLAKSIEYLESKIKKNRPDN-WLEKAAKDM 1448
IL GA+ +R++LA+ ++ E K+K+ + + W++K A++M
Sbjct: 675 ILERFMGAVR-ERVNLARDLDKEELKLKRVQSERGWMKKHAEEM 717
>UNIPROTKB|F1SCG7 [details] [associations]
symbol:LOC100620190 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 OMA:DQQEERR GeneTree:ENSGT00550000074847 EMBL:CT990641
RefSeq:XP_003356831.1 UniGene:Ssc.51900 UniGene:Ssc.99043
Ensembl:ENSSSCT00000002742 GeneID:100157901 KEGG:ssc:100157901
Uniprot:F1SCG7
Length = 856
Score = 891 (318.7 bits), Expect = 1.9e-110, Sum P(4) = 1.9e-110
Identities = 179/374 (47%), Positives = 253/374 (67%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 382 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIAT 441
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE ++ HL+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 442 PGRLWELVKEKQPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTL 501
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H D ++++ + K PK++DLT +
Sbjct: 502 VFSATLTLVHQAPARILHKKHAKKIDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEATVE 558
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 559 TLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACM 618
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 619 HQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 678
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
NEGL+L+L+ +++ + K++ +L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 679 TNEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIRLARQIEKAEYR 738
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 739 NFQACLHNSWIEQA 752
Score = 503 (182.1 bits), Expect = 1.5e-86, Sum P(4) = 1.5e-86
Identities = 93/149 (62%), Positives = 121/149 (81%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL
Sbjct: 545 PKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLL 604
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 605 KVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 664
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
SEIY+HRSGRTARA NEGL+++L+ +++
Sbjct: 665 SEIYVHRSGRTARATNEGLSLMLVGPEDV 693
Score = 316 (116.3 bits), Expect = 1.5e-86, Sum P(4) = 1.5e-86
Identities = 60/123 (48%), Positives = 86/123 (69%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 382 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIAT 441
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE ++ HL+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQT+
Sbjct: 442 PGRLWELVKEKQPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTL 501
Query: 377 IES 379
+ S
Sbjct: 502 VFS 504
Score = 215 (80.7 bits), Expect = 9.7e-26, Sum P(3) = 9.7e-26
Identities = 52/140 (37%), Positives = 74/140 (52%)
Query: 355 PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--H 412
P L N+ + R M+E GHF EL +L+ + ++ + RQT VFSATLT H
Sbjct: 454 PHLSNLRQLRCLVIDEADR--MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVH 511
Query: 413 XXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472
D ++++ + K PK++DLT +TLTE+KI C+
Sbjct: 512 QAPARILHKKHAKKIDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEATVETLTETKIHCE 568
Query: 473 HDEKDSYLYYFILQHPGRTL 492
DEKD YLYYF++Q+PGRTL
Sbjct: 569 TDEKDLYLYYFLMQYPGRTL 588
Score = 179 (68.1 bits), Expect = 9.8e-49, Sum P(3) = 9.8e-49
Identities = 47/156 (30%), Positives = 91/156 (58%)
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKV-DLPDFP-IDESVL---SLIKKRIDLAKSIEYLE 1229
GL VL D +PL + ++++ +L F +++ VL + + +D+ K +
Sbjct: 602 GLLKVL---DIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIH 658
Query: 1230 SKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1289
++ + + ++HRSGRTARA NEGL+L+L+ +++ + K++ +L+K D+P FP+
Sbjct: 659 YQVPRTS-EIYVHRSGRTARATNEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTK 717
Query: 1290 VLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLEKAA 1324
+ +K+RI LA+ IE E + + ++W+E+AA
Sbjct: 718 YMDAVKERIRLARQIEKAEYRNFQACLHNSWIEQAA 753
Score = 178 (67.7 bits), Expect = 5.0e-21, Sum P(4) = 5.0e-21
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 388 LVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRL 445
Score = 156 (60.0 bits), Expect = 1.9e-110, Sum P(4) = 1.9e-110
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 205 AFGIPILTGIV 215
AF IP++ ++
Sbjct: 245 AFAIPMIHAVL 255
Score = 156 (60.0 bits), Expect = 6.9e-108, Sum P(3) = 6.9e-108
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 822 AFGIPILTGIV 832
AF IP++ ++
Sbjct: 245 AFAIPMIHAVL 255
Score = 64 (27.6 bits), Expect = 1.9e-110, Sum P(4) = 1.9e-110
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 1417 KRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
+RI LA+ IE E + + ++W+E+AA + E K + +E K +
Sbjct: 724 ERIRLARQIEKAEYRNFQACLHNSWIEQAAAALEIELEEEMYKGGKVDQQEERRRQKQMK 783
Query: 1476 SKRKELQSLLGK 1487
+KEL+ LL +
Sbjct: 784 ILKKELRQLLAQ 795
Score = 45 (20.9 bits), Expect = 8.4e-37, Sum P(4) = 8.4e-37
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 1217 KRIDLAKSIEYLESKI-KKNRPDNW-LHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1272
K+ID ++ L KI + +P L R+ T E T + E+DE LY+ F
Sbjct: 524 KKIDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTE--TKIHCETDEKDLYLYYF 579
Score = 38 (18.4 bits), Expect = 1.9e-110, Sum P(4) = 1.9e-110
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 343 DET-DRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
DE + ++ H ELK L+ T + P++ ++
Sbjct: 351 DENKEEKLDEEHSGELKQELNSKIATSEAHPKRPLL 386
>MGI|MGI:1351337 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1351337
GO:GO:0005524 GO:GO:0003723 EMBL:CH466549 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 EMBL:AF214732 EMBL:BC055048
EMBL:BC055317 EMBL:U46690 IPI:IPI00380228 RefSeq:NP_001152974.1
RefSeq:NP_065240.2 UniGene:Mm.3935 UniGene:Mm.475067
ProteinModelPortal:Q9ESV0 SMR:Q9ESV0 PhosphoSite:Q9ESV0
PaxDb:Q9ESV0 PRIDE:Q9ESV0 Ensembl:ENSMUST00000044923 GeneID:27225
KEGG:mmu:27225 GeneTree:ENSGT00550000074847 InParanoid:Q7TM97
OrthoDB:EOG45TCMP NextBio:305144 Bgee:Q9ESV0 CleanEx:MM_DDX24
Genevestigator:Q9ESV0 GermOnline:ENSMUSG00000041645 Uniprot:Q9ESV0
Length = 857
Score = 895 (320.1 bits), Expect = 3.8e-109, Sum P(3) = 3.8e-109
Identities = 181/373 (48%), Positives = 253/373 (67%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
R L L+L PTRELAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 385 RRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIAT 444
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE ++ H HL+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 445 PGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPSRQTL 504
Query: 994 VFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKS-PKIVDLTEKIGITKT 1052
VFSATLT D + L + ++ PK++DLT G +T
Sbjct: 505 VFSATLT-LVHQAPARILHKKHVKKMDKTD-KLDLLMQKVGMRGKPKVIDLTRNEGTVET 562
Query: 1053 LTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
LTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+
Sbjct: 563 LTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMH 622
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA
Sbjct: 623 QKQRLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAA 682
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK- 1231
+EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 683 SEGLSLMLIGPEDVINFKKIYKTLQKDEDIPLFPVQSKYMDVVKERIRLARQIEKAEYRN 742
Query: 1232 IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 743 FQACLHNSWIEQA 755
Score = 499 (180.7 bits), Expect = 2.0e-87, Sum P(4) = 2.0e-87
Identities = 94/149 (63%), Positives = 122/149 (81%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK++DLT G +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL
Sbjct: 548 PKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLL 607
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 608 KVLDVMPLTLHACMHQKQRLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRT 667
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
SEIYIHRSGRTARA +EGL+++LI +++
Sbjct: 668 SEIYIHRSGRTARAASEGLSLMLIGPEDV 696
Score = 323 (118.8 bits), Expect = 2.0e-87, Sum P(4) = 2.0e-87
Identities = 62/123 (50%), Positives = 86/123 (69%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
R L L+L PTRELAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 385 RRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIAT 444
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE ++ H HL+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQT+
Sbjct: 445 PGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPSRQTL 504
Query: 377 IES 379
+ S
Sbjct: 505 VFS 507
Score = 217 (81.4 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 52/146 (35%), Positives = 77/146 (52%)
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
+++ H P L N+ + R M+E GHF EL +L+ + ++ + RQT VFS
Sbjct: 451 LVKEKH-PHLSNLRQLRCLVIDEADR--MVEKGHFAELSQLLEMLNDSQYNPSRQTLVFS 507
Query: 408 ATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTE 466
ATLT D + L + ++ PK++DLT G +TLTE
Sbjct: 508 ATLT-LVHQAPARILHKKHVKKMDKTD-KLDLLMQKVGMRGKPKVIDLTRNEGTVETLTE 565
Query: 467 SKILCKHDEKDSYLYYFILQHPGRTL 492
+KI C+ DEKD YLYYF++Q+PGR+L
Sbjct: 566 TKIHCETDEKDLYLYYFLMQYPGRSL 591
Score = 177 (67.4 bits), Expect = 6.4e-50, Sum P(3) = 6.4e-50
Identities = 47/156 (30%), Positives = 91/156 (58%)
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKV-DLPDFP-IDESVL---SLIKKRIDLAKSIEYLE 1229
GL VL D +PL + ++++ +L F + + VL + + +D+ K +
Sbjct: 605 GLLKVL---DVMPLTLHACMHQKQRLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIH 661
Query: 1230 SKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1289
++ + + ++HRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+
Sbjct: 662 YQVPRTS-EIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKDEDIPLFPVQSK 720
Query: 1290 VLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLEKAA 1324
+ ++K+RI LA+ IE E + + ++W+E+AA
Sbjct: 721 YMDVVKERIRLARQIEKAEYRNFQACLHNSWIEQAA 756
Score = 174 (66.3 bits), Expect = 4.8e-22, Sum P(3) = 4.8e-22
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 391 LVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 448
Score = 163 (62.4 bits), Expect = 3.8e-109, Sum P(3) = 3.8e-109
Identities = 47/152 (30%), Positives = 76/152 (50%)
Query: 698 QNPSQVEVSELSAN---TNDPDDQVN--KTEEIQSDEPHSXXXXXXXXXXXTYTSANKEL 752
QN +V+ SE A T D +V K+E + P T+ S + +L
Sbjct: 115 QNEYEVKASEPEAQGEVTACSDQKVGGAKSESLAQAAPRKKKNKGKKKLD-TFQSTSPKL 173
Query: 753 LEVDT----SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
+ + D ++ W +P+ ++RAL GF PT IQ++ + A+ + D
Sbjct: 174 PKKSKKTWMAEVHDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLD 233
Query: 809 IVGAAETGSGKTLAFGIPILTGIV--NKLENP 838
I+GAAETGSGKTLAF IP++ ++ +K++ P
Sbjct: 234 ILGAAETGSGKTLAFAIPMIHSVLQWHKMKAP 265
Score = 162 (62.1 bits), Expect = 4.8e-109, Sum P(3) = 4.8e-109
Identities = 47/152 (30%), Positives = 76/152 (50%)
Query: 81 QNPSQVEVSELSAN---TNDPDDQVN--KTEEIQSDEPSSXXXXXXXXXXXTYTSANKEL 135
QN +V+ SE A T D +V K+E + P T+ S + +L
Sbjct: 115 QNEYEVKASEPEAQGEVTACSDQKVGGAKSESLAQAAPRKKKNKGKKKLD-TFQSTSPKL 173
Query: 136 LEVDT----SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
+ + D ++ W +P+ ++RAL GF PT IQ++ + A+ + D
Sbjct: 174 PKKSKKTWMAEVHDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLD 233
Query: 192 IVGAAETGSGKTLAFGIPILTGIV--NKLENP 221
I+GAAETGSGKTLAF IP++ ++ +K++ P
Sbjct: 234 ILGAAETGSGKTLAFAIPMIHSVLQWHKMKAP 265
Score = 64 (27.6 bits), Expect = 3.8e-109, Sum P(3) = 3.8e-109
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 1417 KRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
+RI LA+ IE E + + ++W+E+AA + E KA+ +E K +
Sbjct: 727 ERIRLARQIEKAEYRNFQACLHNSWIEQAAAALEIELEEEMYKGGKADQQEERRRQKQMK 786
Query: 1476 SKRKELQSLLGK 1487
++EL+ LL +
Sbjct: 787 MLKQELRHLLSQ 798
Score = 44 (20.5 bits), Expect = 2.5e-85, Sum P(4) = 2.5e-85
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 812
QM + +K + + + L+Q+ KT QS P +LA ++I A
Sbjct: 784 QM-KMLKQELRHLLSQPLFQENLKTRYPTQSGRPPQPVLASRNIESA 829
>UNIPROTKB|A6H7B6 [details] [associations]
symbol:DDX24 "DDX24 protein" species:9913 "Bos taurus"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:DAAA02053048
EMBL:BC146184 IPI:IPI00687716 RefSeq:NP_001092515.1 UniGene:Bt.9433
Ensembl:ENSBTAT00000004441 GeneID:529613 KEGG:bta:529613
InParanoid:A6H7B6 NextBio:20875064 Uniprot:A6H7B6
Length = 852
Score = 900 (321.9 bits), Expect = 4.7e-109, Sum P(3) = 4.7e-109
Identities = 179/374 (47%), Positives = 256/374 (68%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ H+ K+T +K A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 380 KRPLLGLVLTPTRELAVQVKQHVDAVAKFTSIKTAILVGGMSTQKQQRMLNRQPEIVIAT 439
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE ++ H HL+ L ++ LVIDE DRM+E GHF EL +L+ ++ ++ + RQT
Sbjct: 440 PGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLSDSQYNPKRQTL 499
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H D ++++ + K PK++DLT K +
Sbjct: 500 VFSATLTLVHQAPARILHKKHAKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRKEATVE 556
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 557 TLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACM 616
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 617 HQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 676
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+EGL+L+L+ +++ + K++ +L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 677 TSEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIRLARQIEKAEYR 736
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 737 NFQACLHNSWIEQA 750
Score = 503 (182.1 bits), Expect = 1.6e-87, Sum P(4) = 1.6e-87
Identities = 93/149 (62%), Positives = 122/149 (81%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK++DLT K +TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL
Sbjct: 543 PKVIDLTRKEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLL 602
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 603 KVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 662
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
SEIY+HRSGRTARA +EGL+++L+ +++
Sbjct: 663 SEIYVHRSGRTARATSEGLSLMLVGPEDV 691
Score = 325 (119.5 bits), Expect = 1.6e-87, Sum P(4) = 1.6e-87
Identities = 60/123 (48%), Positives = 88/123 (71%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ L L+L PTRELA+QV+ H+ K+T +K A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 380 KRPLLGLVLTPTRELAVQVKQHVDAVAKFTSIKTAILVGGMSTQKQQRMLNRQPEIVIAT 439
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE ++ H HL+ L ++ LVIDE DRM+E GHF EL +L+ ++ ++ + RQT+
Sbjct: 440 PGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLSDSQYNPKRQTL 499
Query: 377 IES 379
+ S
Sbjct: 500 VFS 502
Score = 224 (83.9 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
Identities = 54/147 (36%), Positives = 80/147 (54%)
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
+++ H P L N+ + R M+E GHF EL +L+ ++ ++ + RQT VFS
Sbjct: 446 LVKEKH-PHLSNLRQLRCLVIDEADR--MVEKGHFAELSQLLEMLSDSQYNPKRQTLVFS 502
Query: 408 ATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
ATLT H D ++++ + K PK++DLT K +TLT
Sbjct: 503 ATLTLVHQAPARILHKKHAKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRKEATVETLT 559
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTL 492
E+KI C+ DEKD YLYYF++Q+PGRTL
Sbjct: 560 ETKIHCETDEKDLYLYYFLMQYPGRTL 586
Score = 178 (67.7 bits), Expect = 9.1e-22, Sum P(3) = 9.1e-22
Identities = 33/58 (56%), Positives = 45/58 (77%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ H+ K+T +K A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 386 LVLTPTRELAVQVKQHVDAVAKFTSIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRL 443
Score = 174 (66.3 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
Identities = 46/156 (29%), Positives = 91/156 (58%)
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKV-DLPDFP-IDESVL---SLIKKRIDLAKSIEYLE 1229
GL VL D +PL + ++++ +L F +++ VL + + +D+ K +
Sbjct: 600 GLLKVL---DIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIH 656
Query: 1230 SKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1289
++ + + ++HRSGRTARA +EGL+L+L+ +++ + K++ +L+K D+P FP+
Sbjct: 657 YQVPRTS-EIYVHRSGRTARATSEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTK 715
Query: 1290 VLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLEKAA 1324
+ +K+RI LA+ IE E + + ++W+E+AA
Sbjct: 716 YMDAVKERIRLARQIEKAEYRNFQACLHNSWIEQAA 751
Score = 157 (60.3 bits), Expect = 4.7e-109, Sum P(3) = 4.7e-109
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 205 AFGIPILTGIV 215
AF IP++ ++
Sbjct: 245 AFAIPMIDAVL 255
Score = 157 (60.3 bits), Expect = 4.7e-109, Sum P(3) = 4.7e-109
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 185 DHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 244
Query: 822 AFGIPILTGIV 832
AF IP++ ++
Sbjct: 245 AFAIPMIDAVL 255
Score = 63 (27.2 bits), Expect = 4.7e-109, Sum P(3) = 4.7e-109
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 1417 KRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
+RI LA+ IE E + + ++W+E+AA + E K + +E K +
Sbjct: 722 ERIRLARQIEKAEYRNFQACLHNSWIEQAAAALEIELEEEMYRGGKVDEQEERRRQKQMK 781
Query: 1476 SKRKELQSLLGK 1487
+KEL+ LL +
Sbjct: 782 ILKKELRHLLSQ 793
Score = 41 (19.5 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 1217 KRIDLAKSIEYLESKI-KKNRPDNW-LHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1272
K++D ++ L KI + +P L R T E T + E+DE LY+ F
Sbjct: 522 KKMDKTAKLDLLMQKIGMRGKPKVIDLTRKEATVETLTE--TKIHCETDEKDLYLYYF 577
>UNIPROTKB|G3V529 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL079302 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:13266 ChiTaRS:DDX24 ProteinModelPortal:G3V529 SMR:G3V529
Ensembl:ENST00000555054 ArrayExpress:G3V529 Bgee:G3V529
Uniprot:G3V529
Length = 816
Score = 899 (321.5 bits), Expect = 6.3e-109, Sum P(3) = 6.3e-109
Identities = 180/374 (48%), Positives = 255/374 (68%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 342 KRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVAT 401
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H+HL L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 402 PGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTL 461
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H D ++++ + K PK++DLT +
Sbjct: 462 VFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEATVE 518
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 519 TLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACM 578
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 579 HQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 638
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 639 TNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIRLARQIEKSEYR 698
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 699 NFQACLHNSWIEQA 712
Score = 499 (180.7 bits), Expect = 1.2e-87, Sum P(4) = 1.2e-87
Identities = 93/149 (62%), Positives = 121/149 (81%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL
Sbjct: 505 PKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLL 564
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 565 KVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 624
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
SEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 625 SEIYVHRSGRTARATNEGLSLMLIGPEDV 653
Score = 327 (120.2 bits), Expect = 1.2e-87, Sum P(4) = 1.2e-87
Identities = 61/123 (49%), Positives = 87/123 (70%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ L L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 342 KRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVAT 401
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE I+ H+HL L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT+
Sbjct: 402 PGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTL 461
Query: 377 IES 379
+ S
Sbjct: 462 VFS 464
Score = 214 (80.4 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 52/147 (35%), Positives = 79/147 (53%)
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
+I+ H+ L+N+ + R M+E GHF EL +L+ + ++ + RQT VFS
Sbjct: 408 LIKEKHY-HLRNLRQLRCLVVDEADR--MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFS 464
Query: 408 ATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
ATLT H D ++++ + K PK++DLT +TLT
Sbjct: 465 ATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEATVETLT 521
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTL 492
E+KI C+ DEKD YLYYF++Q+PGR+L
Sbjct: 522 ETKIHCETDEKDFYLYYFLMQYPGRSL 548
Score = 181 (68.8 bits), Expect = 2.1e-50, Sum P(3) = 2.1e-50
Identities = 48/156 (30%), Positives = 92/156 (58%)
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKV-DLPDFP-IDESVL---SLIKKRIDLAKSIEYLE 1229
GL VL D +PL + ++++ +L F +++ VL + + +D+ K +
Sbjct: 562 GLLKVL---DIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIH 618
Query: 1230 SKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1289
++ + + ++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+
Sbjct: 619 YQVPRTS-EIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTK 677
Query: 1290 VLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLEKAA 1324
+ ++K+RI LA+ IE E + + ++W+E+AA
Sbjct: 678 YMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 713
Score = 176 (67.0 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 348 LVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 405
Score = 157 (60.3 bits), Expect = 6.3e-109, Sum P(3) = 6.3e-109
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 143 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 202
Query: 205 AFGIPILTGIV 215
AF IP++ ++
Sbjct: 203 AFAIPMIHAVL 213
Score = 157 (60.3 bits), Expect = 6.3e-109, Sum P(3) = 6.3e-109
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 143 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 202
Query: 822 AFGIPILTGIV 832
AF IP++ ++
Sbjct: 203 AFAIPMIHAVL 213
Score = 63 (27.2 bits), Expect = 6.3e-109, Sum P(3) = 6.3e-109
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 1417 KRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
+RI LA+ IE E + + ++W+E+AA + + KA+ +E K +
Sbjct: 684 ERIRLARQIEKSEYRNFQACLHNSWIEQAAAALEIELEEDMYKGGKADQQEERRRQKQMK 743
Query: 1476 SKRKELQSLLGK 1487
+KEL+ LL +
Sbjct: 744 VLKKELRHLLSQ 755
Score = 38 (18.4 bits), Expect = 1.8e-37, Sum P(4) = 1.8e-37
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 1217 KRIDLAKSIEYLESKI-KKNRPDNW-LHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1272
K++D ++ L KI + +P L R+ T E T + E+DE Y+ F
Sbjct: 484 KKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTE--TKIHCETDEKDFYLYYF 539
>UNIPROTKB|Q9GZR7 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003724 "RNA helicase activity"
evidence=NAS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 EMBL:AF214731
EMBL:AL136886 EMBL:AK025162 EMBL:BC008847 EMBL:BC009406
IPI:IPI00006987 RefSeq:NP_065147.1 UniGene:Hs.510328
ProteinModelPortal:Q9GZR7 SMR:Q9GZR7 DIP:DIP-47301N IntAct:Q9GZR7
MINT:MINT-1378437 STRING:Q9GZR7 PhosphoSite:Q9GZR7 DMDM:18202929
SWISS-2DPAGE:Q9GZR7 PaxDb:Q9GZR7 PeptideAtlas:Q9GZR7 PRIDE:Q9GZR7
DNASU:57062 Ensembl:ENST00000330836 GeneID:57062 KEGG:hsa:57062
UCSC:uc001ycj.3 CTD:57062 GeneCards:GC14M094517 HGNC:HGNC:13266
HPA:HPA002554 MIM:606181 neXtProt:NX_Q9GZR7 PharmGKB:PA27211
HOGENOM:HOG000290702 HOVERGEN:HBG104200 InParanoid:Q9GZR7
OMA:DQQEERR PhylomeDB:Q9GZR7 ChiTaRS:DDX24 GenomeRNAi:57062
NextBio:62861 ArrayExpress:Q9GZR7 Bgee:Q9GZR7 CleanEx:HS_DDX24
Genevestigator:Q9GZR7 GermOnline:ENSG00000089737 Uniprot:Q9GZR7
Length = 859
Score = 899 (321.5 bits), Expect = 6.3e-109, Sum P(3) = 6.3e-109
Identities = 180/374 (48%), Positives = 255/374 (68%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 385 KRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVAT 444
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H+HL L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 445 PGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTL 504
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H D ++++ + K PK++DLT +
Sbjct: 505 VFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEATVE 561
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 562 TLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACM 621
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 622 HQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 681
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 682 TNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIRLARQIEKSEYR 741
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 742 NFQACLHNSWIEQA 755
Score = 499 (180.7 bits), Expect = 3.4e-87, Sum P(4) = 3.4e-87
Identities = 93/149 (62%), Positives = 121/149 (81%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL
Sbjct: 548 PKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLL 607
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 608 KVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 667
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
SEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 668 SEIYVHRSGRTARATNEGLSLMLIGPEDV 696
Score = 327 (120.2 bits), Expect = 3.4e-87, Sum P(4) = 3.4e-87
Identities = 61/123 (49%), Positives = 87/123 (70%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ L L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 385 KRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVAT 444
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE I+ H+HL L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT+
Sbjct: 445 PGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTL 504
Query: 377 IES 379
+ S
Sbjct: 505 VFS 507
Score = 214 (80.4 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 52/147 (35%), Positives = 79/147 (53%)
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
+I+ H+ L+N+ + R M+E GHF EL +L+ + ++ + RQT VFS
Sbjct: 451 LIKEKHY-HLRNLRQLRCLVVDEADR--MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFS 507
Query: 408 ATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
ATLT H D ++++ + K PK++DLT +TLT
Sbjct: 508 ATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEATVETLT 564
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTL 492
E+KI C+ DEKD YLYYF++Q+PGR+L
Sbjct: 565 ETKIHCETDEKDFYLYYFLMQYPGRSL 591
Score = 181 (68.8 bits), Expect = 3.0e-50, Sum P(3) = 3.0e-50
Identities = 48/156 (30%), Positives = 92/156 (58%)
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKV-DLPDFP-IDESVL---SLIKKRIDLAKSIEYLE 1229
GL VL D +PL + ++++ +L F +++ VL + + +D+ K +
Sbjct: 605 GLLKVL---DIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIH 661
Query: 1230 SKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1289
++ + + ++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+
Sbjct: 662 YQVPRTS-EIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTK 720
Query: 1290 VLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLEKAA 1324
+ ++K+RI LA+ IE E + + ++W+E+AA
Sbjct: 721 YMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 756
Score = 176 (67.0 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 391 LVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 448
Score = 157 (60.3 bits), Expect = 6.3e-109, Sum P(3) = 6.3e-109
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 245
Query: 205 AFGIPILTGIV 215
AF IP++ ++
Sbjct: 246 AFAIPMIHAVL 256
Score = 157 (60.3 bits), Expect = 6.3e-109, Sum P(3) = 6.3e-109
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D ++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 186 DQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 245
Query: 822 AFGIPILTGIV 832
AF IP++ ++
Sbjct: 246 AFAIPMIHAVL 256
Score = 63 (27.2 bits), Expect = 6.3e-109, Sum P(3) = 6.3e-109
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 1417 KRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
+RI LA+ IE E + + ++W+E+AA + + KA+ +E K +
Sbjct: 727 ERIRLARQIEKSEYRNFQACLHNSWIEQAAAALEIELEEDMYKGGKADQQEERRRQKQMK 786
Query: 1476 SKRKELQSLLGK 1487
+KEL+ LL +
Sbjct: 787 VLKKELRHLLSQ 798
Score = 38 (18.4 bits), Expect = 2.7e-37, Sum P(4) = 2.7e-37
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 1217 KRIDLAKSIEYLESKI-KKNRPDNW-LHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1272
K++D ++ L KI + +P L R+ T E T + E+DE Y+ F
Sbjct: 527 KKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTE--TKIHCETDEKDFYLYYF 582
>RGD|727929 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:727929 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH473982 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:BC097262
EMBL:AY341876 IPI:IPI00200634 RefSeq:NP_954550.1 UniGene:Rn.100166
Ensembl:ENSRNOT00000012256 GeneID:373065 KEGG:rno:373065
UCSC:RGD:727929 InParanoid:Q6VEU8 NextBio:692388
Genevestigator:Q6VEU8 Uniprot:Q6VEU8
Length = 851
Score = 891 (318.7 bits), Expect = 1.6e-108, Sum P(3) = 1.6e-108
Identities = 181/374 (48%), Positives = 254/374 (67%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
R L L+L PTRELA+QV+ HI K+T + A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 379 RRPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIAT 438
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H HL+ L ++ LVIDE DRM+E HF EL +L+ + ++ + RQT
Sbjct: 439 PGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDHFAELSQLLEMLNDSQYNPNRQTL 498
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H D ++++ + K PK++DLT G +
Sbjct: 499 VFSATLTLVHQAPARILHKKHVKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEGTVE 555
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 556 TLTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACM 615
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA
Sbjct: 616 HQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARA 675
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 676 TSEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQSKYMDMVKERIRLARQIEKAEYR 735
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 736 NFQACLHNSWIEQA 749
Score = 501 (181.4 bits), Expect = 6.9e-87, Sum P(4) = 6.9e-87
Identities = 94/149 (63%), Positives = 122/149 (81%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK++DLT G +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL
Sbjct: 542 PKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLL 601
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 602 KVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 661
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
SEIYIHRSGRTARA +EGL+++LI +++
Sbjct: 662 SEIYIHRSGRTARATSEGLSLMLIGPEDV 690
Score = 315 (115.9 bits), Expect = 6.9e-87, Sum P(4) = 6.9e-87
Identities = 61/123 (49%), Positives = 85/123 (69%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
R L L+L PTRELA+QV+ HI K+T + A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 379 RRPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIAT 438
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE I+ H HL+ L ++ LVIDE DRM+E HF EL +L+ + ++ + RQT+
Sbjct: 439 PGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDHFAELSQLLEMLNDSQYNPNRQTL 498
Query: 377 IES 379
+ S
Sbjct: 499 VFS 501
Score = 212 (79.7 bits), Expect = 4.8e-26, Sum P(3) = 4.8e-26
Identities = 53/147 (36%), Positives = 78/147 (53%)
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
+I+ H P L N+ + R M+E HF EL +L+ + ++ + RQT VFS
Sbjct: 445 LIKEKH-PHLSNLRQLRCLVIDEADR--MVEKDHFAELSQLLEMLNDSQYNPNRQTLVFS 501
Query: 408 ATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
ATLT H D ++++ + K PK++DLT G +TLT
Sbjct: 502 ATLTLVHQAPARILHKKHVKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEGTVETLT 558
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTL 492
E+KI C+ DEKD YLYYF++Q+PGR+L
Sbjct: 559 ETKIHCETDEKDLYLYYFLMQYPGRSL 585
Score = 180 (68.4 bits), Expect = 1.8e-49, Sum P(3) = 1.8e-49
Identities = 47/156 (30%), Positives = 92/156 (58%)
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKV-DLPDFP-IDESVL---SLIKKRIDLAKSIEYLE 1229
GL VL D +PL + ++++ +L F +++ VL + + +D+ K +
Sbjct: 599 GLLKVL---DIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIH 655
Query: 1230 SKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1289
++ + + ++HRSGRTARA +EGL+L+LI +++ + K++ +L+K D+P FP+
Sbjct: 656 YQVPRTS-EIYIHRSGRTARATSEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQSK 714
Query: 1290 VLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLEKAA 1324
+ ++K+RI LA+ IE E + + ++W+E+AA
Sbjct: 715 YMDMVKERIRLARQIEKAEYRNFQACLHNSWIEQAA 750
Score = 173 (66.0 bits), Expect = 7.6e-22, Sum P(3) = 7.6e-22
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T + A +VGGMST+KQ R+LN+ P I++ATPG L
Sbjct: 385 LVLTPTRELAVQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 442
Score = 163 (62.4 bits), Expect = 1.6e-108, Sum P(3) = 1.6e-108
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
+D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKT
Sbjct: 185 QDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKT 244
Query: 204 LAFGIPILTGIV--NKLENP 221
LAF IP++ ++ +K++ P
Sbjct: 245 LAFAIPMIHSVLQWHKMKAP 264
Score = 163 (62.4 bits), Expect = 1.6e-108, Sum P(3) = 1.6e-108
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
+D ++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKT
Sbjct: 185 QDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKT 244
Query: 821 LAFGIPILTGIV--NKLENP 838
LAF IP++ ++ +K++ P
Sbjct: 245 LAFAIPMIHSVLQWHKMKAP 264
Score = 63 (27.2 bits), Expect = 1.6e-108, Sum P(3) = 1.6e-108
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 1417 KRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
+RI LA+ IE E + + ++W+E+AA + E KA+ +E K +
Sbjct: 721 ERIRLARQIEKAEYRNFQACLHNSWIEQAAAALEIELEEEMYKGGKADQQEERRRQKQMK 780
Query: 1476 SKRKELQSLLGK 1487
++EL+ LL +
Sbjct: 781 ILKQELRHLLSQ 792
Score = 38 (18.4 bits), Expect = 2.8e-84, Sum P(4) = 2.8e-84
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 771 VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 812
+K + + + L+Q+ KT QS P ++A +++ A
Sbjct: 782 LKQELRHLLSQPLFQENLKTRYPTQSGRPPQPVVAPRNVESA 823
>UNIPROTKB|E2RIC4 [details] [associations]
symbol:DDX24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:DQQEERR
GeneTree:ENSGT00550000074847 EMBL:AAEX03005950
Ensembl:ENSCAFT00000027950 Uniprot:E2RIC4
Length = 818
Score = 896 (320.5 bits), Expect = 3.2e-108, Sum P(3) = 3.2e-108
Identities = 181/374 (48%), Positives = 253/374 (67%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 344 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVVAT 403
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H HL+ L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 404 PGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLGDSQYNPKRQTL 463
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
+FSATLT H D ++++ + K PK++DLT +
Sbjct: 464 IFSATLTLVHQAPARILHKKHTKKIDKTAKLDLFVQKIG--MRGK-PKVIDLTRNEATVE 520
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 521 TLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACM 580
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 581 HQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 640
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
NEGL+L+LI ++ + K++ +L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 641 TNEGLSLMLIGPEDAINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIHLARQIEKAEYR 700
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 701 NFQACLHNSWIEQA 714
Score = 501 (181.4 bits), Expect = 3.0e-87, Sum P(4) = 3.0e-87
Identities = 97/153 (63%), Positives = 121/153 (79%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL
Sbjct: 507 PKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLL 566
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 567 KVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 626
Query: 625 SEIYIHRSGRTARANNEGLTVVLI-ESDEIPLK 656
SEIY+HRSGRTARA NEGL+++LI D I K
Sbjct: 627 SEIYVHRSGRTARATNEGLSLMLIGPEDAINFK 659
Score = 324 (119.1 bits), Expect = 3.0e-87, Sum P(4) = 3.0e-87
Identities = 63/123 (51%), Positives = 87/123 (70%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 344 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVVAT 403
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE I+ H HL+ L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT+
Sbjct: 404 PGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLGDSQYNPKRQTL 463
Query: 377 IES 379
I S
Sbjct: 464 IFS 466
Score = 219 (82.2 bits), Expect = 6.0e-26, Sum P(3) = 6.0e-26
Identities = 53/147 (36%), Positives = 78/147 (53%)
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
+I+ H P L N+ + R M+E GHF EL +L+ + ++ + RQT +FS
Sbjct: 410 LIKEKH-PHLSNLRQLRCLVVDEADR--MVEKGHFAELSQLLEMLGDSQYNPKRQTLIFS 466
Query: 408 ATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
ATLT H D ++++ + K PK++DLT +TLT
Sbjct: 467 ATLTLVHQAPARILHKKHTKKIDKTAKLDLFVQKIG--MRGK-PKVIDLTRNEATVETLT 523
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTL 492
E+KI C+ DEKD YLYYF++Q+PGRTL
Sbjct: 524 ETKIHCETDEKDLYLYYFLMQYPGRTL 550
Score = 179 (68.1 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 350 LVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVVATPGRL 407
Score = 177 (67.4 bits), Expect = 3.2e-49, Sum P(3) = 3.2e-49
Identities = 48/156 (30%), Positives = 90/156 (57%)
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKV-DLPDFP-IDESVL---SLIKKRIDLAKSIEYLE 1229
GL VL D +PL + ++++ +L F +++ VL + + +D+ K +
Sbjct: 564 GLLKVL---DIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIH 620
Query: 1230 SKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1289
++ + + ++HRSGRTARA NEGL+L+LI ++ + K++ +L+K D+P FP+
Sbjct: 621 YQVPRTS-EIYVHRSGRTARATNEGLSLMLIGPEDAINFKKIYKTLKKDEDIPLFPVQTK 679
Query: 1290 VLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLEKAA 1324
+ +K+RI LA+ IE E + + ++W+E+AA
Sbjct: 680 YMDAVKERIHLARQIEKAEYRNFQACLHNSWIEQAA 715
Score = 153 (58.9 bits), Expect = 3.2e-108, Sum P(3) = 3.2e-108
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D + W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 184 DHKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 243
Query: 205 AFGIPIL 211
AF IP++
Sbjct: 244 AFAIPMI 250
Score = 153 (58.9 bits), Expect = 3.2e-108, Sum P(3) = 3.2e-108
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D + W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTL
Sbjct: 184 DHKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTL 243
Query: 822 AFGIPIL 828
AF IP++
Sbjct: 244 AFAIPMI 250
Score = 64 (27.6 bits), Expect = 3.2e-108, Sum P(3) = 3.2e-108
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 1417 KRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
+RI LA+ IE E + + ++W+E+AA + E K + +E K +
Sbjct: 686 ERIHLARQIEKAEYRNFQACLHNSWIEQAAAALEIELEEEMYKGRKTDQQEERRRQKQMK 745
Query: 1476 SKRKELQSLLGK 1487
+KEL+ LL +
Sbjct: 746 VLKKELRHLLSQ 757
Score = 41 (19.5 bits), Expect = 3.9e-37, Sum P(4) = 3.9e-37
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 1217 KRIDLAKSIEYLESKI-KKNRPDNW-LHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1272
K+ID ++ KI + +P L R+ T E T + E+DE LY+ F
Sbjct: 486 KKIDKTAKLDLFVQKIGMRGKPKVIDLTRNEATVETLTE--TKIHCETDEKDLYLYYF 541
>UNIPROTKB|F1NJ62 [details] [associations]
symbol:F1NJ62 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074847 EMBL:AADN02003663 EMBL:AADN02003664
EMBL:AADN02003665 EMBL:AADN02034739 IPI:IPI00571504
Ensembl:ENSGALT00000017692 Uniprot:F1NJ62
Length = 851
Score = 939 (335.6 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 183/373 (49%), Positives = 259/373 (69%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++AT
Sbjct: 391 KRPLLGLVLTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIAT 450
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H HL+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQTF
Sbjct: 451 PGRLWELIKERHPHLSNLRQLRCLVIDEADRMVERGHFLELSQLLEVLNDSQYNPKRQTF 510
Query: 994 VFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKS-PKIVDLTEKIGITKT 1052
VFSATLT ++ L + + IK PK++DLT K +T
Sbjct: 511 VFSATLT--LVHQTPARILQKKNAKKIDKKTKLEMLMEKVGIKGKPKVIDLTRKEATVET 568
Query: 1053 LTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
L E++I C +EKD YLYYF+LQ+PGRT+VF NSI +KRL+ LLT+L C P PLHA+M+
Sbjct: 569 LMETRIHCDTNEKDYYLYYFLLQYPGRTMVFANSIDCIKRLSSLLTILNCDPFPLHANMH 628
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q+QRLKNL+RF ++ + +LL TDVAARGLDIP ++HVIHY VPRTSE+Y+HRSGRTARA
Sbjct: 629 QKQRLKNLERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVPRTSELYVHRSGRTARAA 688
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLES-K 1231
NEGL+L+LI D++ + K++ +L+K +LP FP++ ++ IK+R++LA+ IE E
Sbjct: 689 NEGLSLLLIGPDDLINFRKIYKTLQKSEELPLFPVETKYMTAIKERVNLARQIEKAEFFN 748
Query: 1232 IKKNRPDNWLHRS 1244
+ + D+WL ++
Sbjct: 749 GRAKQHDSWLQQA 761
Score = 535 (193.4 bits), Expect = 9.3e-90, Sum P(4) = 9.3e-90
Identities = 98/165 (59%), Positives = 131/165 (79%)
Query: 490 RTLCEEIQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
+T E + + + IK PK++DLT K +TL E++I C +EKD YLYYF+LQ+PGRT+
Sbjct: 538 KTKLEMLMEKVGIKGKPKVIDLTRKEATVETLMETRIHCDTNEKDYYLYYFLLQYPGRTM 597
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608
VF NSI +KRL+ LLT+L C P PLHA+M+Q+QRLKNL+RF ++ + +LL TDVAARGL
Sbjct: 598 VFANSIDCIKRLSSLLTILNCDPFPLHANMHQKQRLKNLERFAERESCVLLTTDVAARGL 657
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
DIP ++HVIHY VPRTSE+Y+HRSGRTARA NEGL+++LI D++
Sbjct: 658 DIPNVQHVIHYQVPRTSELYVHRSGRTARAANEGLSLLLIGPDDL 702
Score = 312 (114.9 bits), Expect = 9.3e-90, Sum P(4) = 9.3e-90
Identities = 60/123 (48%), Positives = 86/123 (69%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ L L+L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++AT
Sbjct: 391 KRPLLGLVLTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIAT 450
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE I+ H HL+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 451 PGRLWELIKERHPHLSNLRQLRCLVIDEADRMVERGHFLELSQLLEVLNDSQYNPKRQTF 510
Query: 377 IES 379
+ S
Sbjct: 511 VFS 513
Score = 217 (81.4 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 53/146 (36%), Positives = 77/146 (52%)
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
+I+ H P L N+ + R M+E GHF EL +L+ + ++ + RQTFVFS
Sbjct: 457 LIKERH-PHLSNLRQLRCLVIDEADR--MVERGHFLELSQLLEVLNDSQYNPKRQTFVFS 513
Query: 408 ATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTE 466
ATLT ++ L + + IK PK++DLT K +TL E
Sbjct: 514 ATLT--LVHQTPARILQKKNAKKIDKKTKLEMLMEKVGIKGKPKVIDLTRKEATVETLME 571
Query: 467 SKILCKHDEKDSYLYYFILQHPGRTL 492
++I C +EKD YLYYF+LQ+PGRT+
Sbjct: 572 TRIHCDTNEKDYYLYYFLLQYPGRTM 597
Score = 202 (76.2 bits), Expect = 4.3e-48, Sum P(3) = 4.3e-48
Identities = 50/153 (32%), Positives = 89/153 (58%)
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSL---IKKR-IDLAKSIEYLESKIK 1233
L ++ D PL+ M K +L F ES + L + R +D+ + ++
Sbjct: 613 LTILNCDPFPLHANMHQKQRLK-NLERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVP 671
Query: 1234 KNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSL 1293
+ + ++HRSGRTARA NEGL+L+LI D++ + K++ +L+K +LP FP++ ++
Sbjct: 672 RTS-ELYVHRSGRTARAANEGLSLLLIGPDDLINFRKIYKTLQKSEELPLFPVETKYMTA 730
Query: 1294 IKKRIDLAKSIEYLES-KIKKNRPDNWLEKAAK 1325
IK+R++LA+ IE E + + D+WL++AA+
Sbjct: 731 IKERVNLARQIEKAEFFNGRAKQHDSWLQQAAE 763
Score = 172 (65.6 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 32/58 (55%), Positives = 45/58 (77%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++ATPG L
Sbjct: 397 LVLTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRL 454
Score = 131 (51.2 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
E+L T + D+ + W +P+ +++AL GF PT IQ++ +PSA+ DI+
Sbjct: 182 EVLSTSTDHKADV----SAWKDLFVPQPVLKALSSLGFSAPTPIQALTLPSAIRDNMDIL 237
Query: 811 GAAETGSGKTLAFGIPILTGIVN 833
GAAETG L P+++ I +
Sbjct: 238 GAAETGIN-LLTVSFPVISQITS 259
Score = 131 (51.2 bits), Expect = 9.3e-90, Sum P(4) = 9.3e-90
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 134 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
E+L T + D+ + W +P+ +++AL GF PT IQ++ +PSA+ DI+
Sbjct: 182 EVLSTSTDHKADV----SAWKDLFVPQPVLKALSSLGFSAPTPIQALTLPSAIRDNMDIL 237
Query: 194 GAAETGSGKTLAFGIPILTGIVN 216
GAAETG L P+++ I +
Sbjct: 238 GAAETGIN-LLTVSFPVISQITS 259
Score = 85 (35.0 bits), Expect = 9.3e-90, Sum P(4) = 9.3e-90
Identities = 25/95 (26%), Positives = 49/95 (51%)
Query: 1395 KQLRILNKCPHILVATPGALSLK-RIDLAKSIEYLES-KIKKNRPDNWLEKAAKDMXXXX 1452
K L+ + P V T ++K R++LA+ IE E + + D+WL++AA+ +
Sbjct: 710 KTLQKSEELPLFPVETKYMTAIKERVNLARQIEKAEFFNGRAKQHDSWLQQAAEALEVDL 769
Query: 1453 XXENLIQPKANSRENALMSKALVSKRKELQSLLGK 1487
+ L+ K + +E + K L +K+L+ +L +
Sbjct: 770 DDDLLMGKKTSEQEESQKQKMLKGMKKQLKHMLSQ 804
>DICTYBASE|DDB_G0281841 [details] [associations]
symbol:ddx24 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281841 GO:GO:0005524 GenomeReviews:CM000152_GR
GO:GO:0003723 EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_640452.1 ProteinModelPortal:Q54TD7
EnsemblProtists:DDB0234200 GeneID:8623265 KEGG:ddi:DDB_G0281841
KO:K14805 OMA:NIDHVAH Uniprot:Q54TD7
Length = 940
Score = 574 (207.1 bits), Expect = 1.2e-96, Sum P(2) = 1.2e-96
Identities = 139/372 (37%), Positives = 204/372 (54%)
Query: 960 DETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXX 1019
D+ D I EL+ + T+ RQTFVFSATL +
Sbjct: 552 DDMDDQIPDEEMEELEQ--EEQNHLTTTHKRQTFVFSATLVNIPGDGAPTSQKKKYRKLT 609
Query: 1020 XXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 1079
P ++ + + K++D+T+K K L E+KI C +EKD YLYYF+ ++PGR
Sbjct: 610 ----PIENLIEKVRFQRDYKLIDVTQKRLTAKNLLETKIFCNLEEKDMYLYYFVERYPGR 665
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
TLVF NSI +RL + +L+ LHA M Q+QRLKNLDRFR +N +L+ATDVAAR
Sbjct: 666 TLVFVNSIDCARRLIPIFNILEVPVFALHAQMQQKQRLKNLDRFRTLDNVVLIATDVAAR 725
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++HVIHY VPRT+++YIHRSGRTAR++ +G+++VL+ E PLYIK+ +S+E
Sbjct: 726 GLDIPLVQHVIHYQVPRTTQLYIHRSGRTARSDQDGISVVLVTPKERPLYIKLDSSIEH- 784
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSGRTARANNEGLTLV 1258
D+ +FP D + ++ RI+LAK I+ L + +K NR +W + +G
Sbjct: 785 -DIGNFPTDIRYMEGVRDRIELAKEIDKLSHQSLKDNREKSWFKKQAEEMDIELDGDFFG 843
Query: 1259 LIESDE------IPLYIKMFNSLEKKVDLPDFPIDESVLSL-IKKRIDLAKSIEYLESKI 1311
DE I K F + + L + S+L + + A +I+ LESK
Sbjct: 844 ENSDDEQSEDTRIAEQKKQFKLKQLRAQLKHL-LSRSLLPRGVSQSYITASAIQELESKS 902
Query: 1312 KKNRPDNWLEKA 1323
+ + ++ KA
Sbjct: 903 QSSAATDFSNKA 914
Score = 470 (170.5 bits), Expect = 1.2e-96, Sum P(2) = 1.2e-96
Identities = 103/258 (39%), Positives = 148/258 (57%)
Query: 133 KELLEVDTSNNEDMF-VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
KE+ E T + E+ + M+EW +N+ I++ L GF PT+IQS V+P A+ + D
Sbjct: 275 KEISEQKTISKEEQDQLDMSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYD 334
Query: 192 IVGAAETGSGKTLAFGIPILTGIVNKLEN--PTXXXXXXXXXXXXXXXXXXXXXXXSANT 249
++GAA+TGSGKTLAFGIP++ I+ L
Sbjct: 335 VIGAAQTGSGKTLAFGIPMVQRILQHLRKHGQNVENKANKQQNDNDDENEDVEEEEEEEE 394
Query: 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309
E K KL++L++ PTRELAIQV NHI +T +KV +VGGM++++Q R+L+K
Sbjct: 395 EEGRSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQQRVLSKR 454
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
P I+VATPGRLWE I GH HL EL + L IDE DRM+E GHF EL++IL + + T
Sbjct: 455 PEIVVATPGRLWELITEGHQHLVELESLLCLGIDEADRMVEQGHFAELESILKTLPIHRT 514
Query: 370 SQPRQTMIESGHFPELKN 387
+ ++ ++ E +N
Sbjct: 515 AMSKKERLKKKETEEKRN 532
Score = 463 (168.0 bits), Expect = 4.2e-95, Sum P(3) = 4.2e-95
Identities = 101/245 (41%), Positives = 143/245 (58%)
Query: 750 KELLEVDTSNNEDMF-VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
KE+ E T + E+ + M+EW +N+ I++ L GF PT+IQS V+P A+ + D
Sbjct: 275 KEISEQKTISKEEQDQLDMSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYD 334
Query: 809 IVGAAETGSGKTLAFGIPILTGIVNKLEN--PTXXXXXXXXXXXXXXXXXXXXXXXSANT 866
++GAA+TGSGKTLAFGIP++ I+ L
Sbjct: 335 VIGAAQTGSGKTLAFGIPMVQRILQHLRKHGQNVENKANKQQNDNDDENEDVEEEEEEEE 394
Query: 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926
E K KL++L++ PTRELAIQV NHI +T +KV +VGGM++++Q R+L+K
Sbjct: 395 EEGRSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQQRVLSKR 454
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 986
P I+VATPGRLWE I GH HL EL + L IDE DRM+E GHF EL++IL + + T
Sbjct: 455 PEIVVATPGRLWELITEGHQHLVELESLLCLGIDEADRMVEQGHFAELESILKTLPIHRT 514
Query: 987 SQPRQ 991
+ ++
Sbjct: 515 AMSKK 519
Score = 463 (168.0 bits), Expect = 2.6e-86, Sum P(3) = 2.6e-86
Identities = 87/155 (56%), Positives = 116/155 (74%)
Query: 506 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 565
K++D+T+K K L E+KI C +EKD YLYYF+ ++PGRTLVF NSI +RL +
Sbjct: 625 KLIDVTQKRLTAKNLLETKIFCNLEEKDMYLYYFVERYPGRTLVFVNSIDCARRLIPIFN 684
Query: 566 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625
+L+ LHA M Q+QRLKNLDRFR +N +L+ATDVAARGLDIP ++HVIHY VPRT+
Sbjct: 685 ILEVPVFALHAQMQQKQRLKNLDRFRTLDNVVLIATDVAARGLDIPLVQHVIHYQVPRTT 744
Query: 626 EIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660
++YIHRSGRTAR++ +G++VVL+ E PL K +
Sbjct: 745 QLYIHRSGRTARSDQDGISVVLVTPKERPLYIKLD 779
Score = 185 (70.2 bits), Expect = 3.2e-65, Sum P(3) = 3.2e-65
Identities = 37/89 (41%), Positives = 62/89 (69%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HRSGRTAR++ +G+++VL+ E PLYIK+ +S+E D+ +FP D + ++ RI+
Sbjct: 747 YIHRSGRTARSDQDGISVVLVTPKERPLYIKLDSSIEH--DIGNFPTDIRYMEGVRDRIE 804
Query: 1300 LAKSIEYLESK-IKKNRPDNWLEKAAKDM 1327
LAK I+ L + +K NR +W +K A++M
Sbjct: 805 LAKEIDKLSHQSLKDNREKSWFKKQAEEM 833
Score = 167 (63.8 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 35/70 (50%), Positives = 49/70 (70%)
Query: 1346 ESRNLRY-SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 1404
E R+ Y +L++ PTRELAIQV NHI +T +KV +VGGM++++Q R+L+K P
Sbjct: 396 EGRSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQQRVLSKRP 455
Query: 1405 HILVATPGAL 1414
I+VATPG L
Sbjct: 456 EIVVATPGRL 465
Score = 146 (56.5 bits), Expect = 3.2e-65, Sum P(3) = 3.2e-65
Identities = 35/96 (36%), Positives = 50/96 (52%)
Query: 397 TSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTE 456
T+ RQTFVFSATL + P ++ + + K++D+T+
Sbjct: 576 TTHKRQTFVFSATLVNIPGDGAPTSQKKKYRKLT----PIENLIEKVRFQRDYKLIDVTQ 631
Query: 457 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
K K L E+KI C +EKD YLYYF+ ++PGRTL
Sbjct: 632 KRLTAKNLLETKIFCNLEEKDMYLYYFVERYPGRTL 667
Score = 69 (29.3 bits), Expect = 2.6e-86, Sum P(3) = 2.6e-86
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 1418 RIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXX----ENLIQPKANSRENALMSK 1472
RI+LAK I+ L + +K NR +W +K A++M EN ++ A K
Sbjct: 802 RIELAKEIDKLSHQSLKDNREKSWFKKQAEEMDIELDGDFFGENSDDEQSEDTRIAEQKK 861
Query: 1473 ALVSK--RKELQSLLGKSV 1489
K R +L+ LL +S+
Sbjct: 862 QFKLKQLRAQLKHLLSRSL 880
Score = 57 (25.1 bits), Expect = 5.2e-43, Sum P(3) = 5.2e-43
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 353 HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402
H EL+++L + + E + M+E GHF EL++IL + + T+ ++
Sbjct: 475 HLVELESLLC-LGIDEADR----MVEQGHFAELESILKTLPIHRTAMSKK 519
Score = 38 (18.4 bits), Expect = 4.2e-95, Sum P(3) = 4.2e-95
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 450 KIVDLTEKIGITKTLTESKILCKHDEKD 477
K ++ EKI K ++E K + K +E+D
Sbjct: 263 KNINKLEKIKKRKEISEQKTISK-EEQD 289
Score = 38 (18.4 bits), Expect = 4.2e-95, Sum P(3) = 4.2e-95
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 506 KIVDLTEKIGITKTLTESKILCKHDEKD 533
K ++ EKI K ++E K + K +E+D
Sbjct: 263 KNINKLEKIKKRKEISEQKTISK-EEQD 289
Score = 38 (18.4 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKD 1066
K ++ EKI K ++E K + K +E+D
Sbjct: 263 KNINKLEKIKKRKEISEQKTISK-EEQD 289
>UNIPROTKB|F5GYL3 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL079302 GO:GO:0008026 HGNC:HGNC:13266 ChiTaRS:DDX24
IPI:IPI00911118 ProteinModelPortal:F5GYL3 SMR:F5GYL3
Ensembl:ENST00000544005 ArrayExpress:F5GYL3 Bgee:F5GYL3
Uniprot:F5GYL3
Length = 609
Score = 899 (321.5 bits), Expect = 3.9e-94, Sum P(2) = 3.9e-94
Identities = 180/374 (48%), Positives = 255/374 (68%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 135 KRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVAT 194
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H+HL L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 195 PGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTL 254
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H D ++++ + K PK++DLT +
Sbjct: 255 VFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEATVE 311
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 312 TLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACM 371
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 372 HQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 431
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 432 TNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIRLARQIEKSEYR 491
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 492 NFQACLHNSWIEQA 505
Score = 499 (180.7 bits), Expect = 6.8e-82, Sum P(3) = 6.8e-82
Identities = 93/149 (62%), Positives = 121/149 (81%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL
Sbjct: 298 PKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLL 357
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 358 KVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 417
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
SEIY+HRSGRTARA NEGL+++LI +++
Sbjct: 418 SEIYVHRSGRTARATNEGLSLMLIGPEDV 446
Score = 327 (120.2 bits), Expect = 6.8e-82, Sum P(3) = 6.8e-82
Identities = 61/123 (49%), Positives = 87/123 (70%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ L L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 135 KRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVAT 194
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRLWE I+ H+HL L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT+
Sbjct: 195 PGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTL 254
Query: 377 IES 379
+ S
Sbjct: 255 VFS 257
Score = 214 (80.4 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 52/147 (35%), Positives = 79/147 (53%)
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
+I+ H+ L+N+ + R M+E GHF EL +L+ + ++ + RQT VFS
Sbjct: 201 LIKEKHY-HLRNLRQLRCLVVDEADR--MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFS 257
Query: 408 ATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465
ATLT H D ++++ + K PK++DLT +TLT
Sbjct: 258 ATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEATVETLT 314
Query: 466 ESKILCKHDEKDSYLYYFILQHPGRTL 492
E+KI C+ DEKD YLYYF++Q+PGR+L
Sbjct: 315 ETKIHCETDEKDFYLYYFLMQYPGRSL 341
Score = 181 (68.8 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 48/156 (30%), Positives = 92/156 (58%)
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKV-DLPDFP-IDESVL---SLIKKRIDLAKSIEYLE 1229
GL VL D +PL + ++++ +L F +++ VL + + +D+ K +
Sbjct: 355 GLLKVL---DIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIH 411
Query: 1230 SKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1289
++ + + ++HRSGRTARA NEGL+L+LI +++ + K++ +L+K D+P FP+
Sbjct: 412 YQVPRTS-EIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTK 470
Query: 1290 VLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLEKAA 1324
+ ++K+RI LA+ IE E + + ++W+E+AA
Sbjct: 471 YMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 506
Score = 176 (67.0 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VATPG L
Sbjct: 141 LVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 198
Score = 63 (27.2 bits), Expect = 3.9e-94, Sum P(2) = 3.9e-94
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 1417 KRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
+RI LA+ IE E + + ++W+E+AA + + KA+ +E K +
Sbjct: 477 ERIRLARQIEKSEYRNFQACLHNSWIEQAAAALEIELEEDMYKGGKADQQEERRRQKQMK 536
Query: 1476 SKRKELQSLLGK 1487
+KEL+ LL +
Sbjct: 537 VLKKELRHLLSQ 548
Score = 38 (18.4 bits), Expect = 8.6e-27, Sum P(3) = 8.6e-27
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 1217 KRIDLAKSIEYLESKI-KKNRPDNW-LHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1272
K++D ++ L KI + +P L R+ T E T + E+DE Y+ F
Sbjct: 277 KKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTE--TKIHCETDEKDFYLYYF 332
>WB|WBGene00018890 [details] [associations]
symbol:F55F8.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003676 GO:GO:0040035 GO:GO:0040002 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K14805 HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847
OMA:VEEGYFA EMBL:FO081477 PIR:T29584 RefSeq:NP_491652.1
ProteinModelPortal:P91340 SMR:P91340 STRING:P91340 PaxDb:P91340
PRIDE:P91340 EnsemblMetazoa:F55F8.2a GeneID:172223
KEGG:cel:CELE_F55F8.2 UCSC:F55F8.2a CTD:172223 WormBase:F55F8.2a
InParanoid:P91340 NextBio:874573 ArrayExpress:P91340 Uniprot:P91340
Length = 746
Score = 750 (269.1 bits), Expect = 3.1e-93, Sum P(3) = 3.1e-93
Identities = 167/379 (44%), Positives = 234/379 (61%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGRL 937
ALI+APTREL IQ+ HI T + +VGG++ KQ RI+++ P I+VATPGRL
Sbjct: 238 ALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRL 297
Query: 938 WEFIQ---LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFV 994
W +Q G F L E + LV+DETDRM+E G+F EL +IL+++ + QT V
Sbjct: 298 WAMMQEAETGEF-LAEWKDLKCLVVDETDRMVEEGYFAELTHILNKIHEESEKEKLQTLV 356
Query: 995 FSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPK--IVDLTEKIGITKT 1052
FSATLT I+RL L ++ K ++DLT ++G
Sbjct: 357 FSATLTFAKAQDVAEEEKKKAKELSS--QQKIQRLIKLTGLRENKHKVIDLTRQMGTAGC 414
Query: 1053 LTESKILCKHD-EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
L E++I C + EKD+ L Y + ++PGRT+VF NSI + +RL +L + P+ LHA M
Sbjct: 415 LVEARINCGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAARRLYSVLKSVNIDPMILHAKM 474
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
Q+QRLKNL++F + N++LLATDVAARGLDI GI+HVIHY VP+ EIYIHRSGRTARA
Sbjct: 475 IQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPKKVEIYIHRSGRTARA 534
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID-ESVLSLIKKRIDLAKSIEYLES 1230
++ GLT+VL++ Y+K+ L + DL FPID E +++ IKKR+ LA I+ L
Sbjct: 535 SHRGLTVVLVDPPSRQFYMKLCKGLNRMQDLNVFPIDFEPLMNAIKKRVRLASEIDSLGF 594
Query: 1231 KIKKNR-PDNWLHRSGRTA 1248
+ KK + ++W ++ R A
Sbjct: 595 RCKKIKMSESWFEKAARAA 613
Score = 421 (153.3 bits), Expect = 6.7e-71, Sum P(4) = 6.7e-71
Identities = 81/145 (55%), Positives = 110/145 (75%)
Query: 506 KIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
K++DLT ++G L E++I C + EKD+ L Y + ++PGRT+VF NSI + +RL +L
Sbjct: 401 KVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAARRLYSVL 460
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+ P+ LHA M Q+QRLKNL++F + N++LLATDVAARGLDI GI+HVIHY VP+
Sbjct: 461 KSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPKK 520
Query: 625 SEIYIHRSGRTARANNEGLTVVLIE 649
EIYIHRSGRTARA++ GLTVVL++
Sbjct: 521 VEIYIHRSGRTARASHRGLTVVLVD 545
Score = 234 (87.4 bits), Expect = 6.7e-71, Sum P(4) = 6.7e-71
Identities = 54/122 (44%), Positives = 76/122 (62%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGRL 320
ALI+APTREL IQ+ HI T + +VGG++ KQ RI+++ P I+VATPGRL
Sbjct: 238 ALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRL 297
Query: 321 WEFIQ---LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
W +Q G F L E + LV+DETDRM+E G+F EL +IL+++ + QT++
Sbjct: 298 WAMMQEAETGEF-LAEWKDLKCLVVDETDRMVEEGYFAELTHILNKIHEESEKEKLQTLV 356
Query: 378 ES 379
S
Sbjct: 357 FS 358
Score = 189 (71.6 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 68/233 (29%), Positives = 115/233 (49%)
Query: 1109 ASMNQRQRLKNLDRFRDQNNSIL-LATDVAARGLDIPGIEHVIHYHVPRTSEIYI--HRS 1165
+S + QRL L R+ + ++ L + G + + + TS +Y+
Sbjct: 381 SSQQKIQRLIKLTGLRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYP 440
Query: 1166 GRTARANNE-----GLTLVL--IESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSL---I 1215
GRT N L VL + D + L+ KM K +L F ++ + L +
Sbjct: 441 GRTIVFVNSIDAARRLYSVLKSVNIDPMILHAKMIQKQRLK-NLEKFSESKNAVLLATDV 499
Query: 1216 KKR-IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1274
R +D+ + ++ K + + ++HRSGRTARA++ GLT+VL++ Y+K+
Sbjct: 500 AARGLDIQGIDHVIHYQVPK-KVEIYIHRSGRTARASHRGLTVVLVDPPSRQFYMKLCKG 558
Query: 1275 LEKKVDLPDFPID-ESVLSLIKKRIDLAKSIEYLESKIKKNR-PDNWLEKAAK 1325
L + DL FPID E +++ IKKR+ LA I+ L + KK + ++W EKAA+
Sbjct: 559 LNRMQDLNVFPIDFEPLMNAIKKRVRLASEIDSLGFRCKKIKMSESWFEKAAR 611
Score = 180 (68.4 bits), Expect = 3.1e-93, Sum P(3) = 3.1e-93
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 150 MAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
++ W +F +P ++ A+ Q GF PT+IQS V+P+A+ R+D++GAAETGSGKTLAFGI
Sbjct: 153 ISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGI 212
Query: 209 PILTGIVNKLEN 220
P++ ++ ++
Sbjct: 213 PLVARLLESSDD 224
Score = 180 (68.4 bits), Expect = 3.1e-93, Sum P(3) = 3.1e-93
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 767 MAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
++ W +F +P ++ A+ Q GF PT+IQS V+P+A+ R+D++GAAETGSGKTLAFGI
Sbjct: 153 ISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGI 212
Query: 826 PILTGIVNKLEN 837
P++ ++ ++
Sbjct: 213 PLVARLLESSDD 224
Score = 159 (61.0 bits), Expect = 8.3e-22, Sum P(3) = 8.3e-22
Identities = 47/147 (31%), Positives = 74/147 (50%)
Query: 350 ESGHF-PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 408
E+G F E K+ L + + ET + M+E G+F EL +IL+++ + QT VFSA
Sbjct: 305 ETGEFLAEWKD-LKCLVVDETDR----MVEEGYFAELTHILNKIHEESEKEKLQTLVFSA 359
Query: 409 TLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPK--IVDLTEKIGITKTLTE 466
TLT I+RL L ++ K ++DLT ++G L E
Sbjct: 360 TLTFAKAQDVAEEEKKKAKELSS--QQKIQRLIKLTGLRENKHKVIDLTRQMGTAGCLVE 417
Query: 467 SKILCKHD-EKDSYLYYFILQHPGRTL 492
++I C + EKD+ L Y + ++PGRT+
Sbjct: 418 ARINCGNLLEKDTSLVYLLTRYPGRTI 444
Score = 123 (48.4 bits), Expect = 4.1e-18, Sum P(3) = 4.1e-18
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGAL 1414
ALI+APTREL IQ+ HI T + +VGG++ KQ RI+++ P I+VATPG L
Sbjct: 238 ALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRL 297
Score = 57 (25.1 bits), Expect = 3.1e-93, Sum P(3) = 3.1e-93
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1417 KRIDLAKSIEYLESKIKKNR-PDNWLEKAAK 1446
KR+ LA I+ L + KK + ++W EKAA+
Sbjct: 581 KRVRLASEIDSLGFRCKKIKMSESWFEKAAR 611
Score = 42 (19.8 bits), Expect = 2.5e-69, Sum P(4) = 2.5e-69
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 1207 IDESVLSLIKKRIDLAKSIEYLESKIKKNRPD--NWLHRSGRTARANNEGL 1255
+ ++ + ++ ++ID K E+ K R D N + +S ++++ N E L
Sbjct: 679 VGDNAIDVLNQKIDETK--EWKRKSRKATREDEMNSMKKSLKSSQKNKERL 727
>POMBASE|SPBC4F6.07c [details] [associations]
symbol:SPBC4F6.07c "ATP-dependent RNA helicase Mak5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC4F6.07c
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702
OMA:VEEGYFA OrthoDB:EOG44J5S7 PIR:T40504 RefSeq:NP_596107.1
ProteinModelPortal:O74393 STRING:O74393 EnsemblFungi:SPBC4F6.07c.1
GeneID:2540874 KEGG:spo:SPBC4F6.07c NextBio:20801990 Uniprot:O74393
Length = 648
Score = 698 (250.8 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 146/367 (39%), Positives = 223/367 (60%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
AL++APTRELA Q+ H + K +P ++V + GG++ +KQ R+LNK PH++VATPGRL
Sbjct: 195 ALVVAPTRELAHQICQHF-ELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRL 253
Query: 938 WEFIQLGHFHLTELYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
W I + LT +K I LV+DE DR+++ HF EL +L+ + +Q RQTF+FS
Sbjct: 254 WSVINENN--LTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQ-RQTFIFS 310
Query: 997 ATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
AT P L+++ PK +D + + + E
Sbjct: 311 ATFDEGLQQRLKKNMKGNITEKYNS--PMENMLKEVRFFGKPKFLDANPQSAVASRVLEG 368
Query: 1057 KILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
I C EKD YLYY I+++PG+T+VF N I +KR+T L LK PLHA ++Q++R
Sbjct: 369 LIECAPAEKDLYLYYLIMRYPGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKR 428
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
L++L++F++ +L+ TDVAARG+DIP + HVIHYHVP T+++Y+HRSGRTARAN +G+
Sbjct: 429 LQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGV 488
Query: 1177 TLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK- 1234
++++ E+ ++ L+KK++ +FP+D S+L ++K R+ LA I L K +
Sbjct: 489 SILMCGPKELSQLKRLCYRLKKKIETFINFPVDMSILDILKTRVVLAHKIVNLTRKDGRV 548
Query: 1235 NRPDNWL 1241
R + WL
Sbjct: 549 GREEAWL 555
Score = 404 (147.3 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 69/149 (46%), Positives = 105/149 (70%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK +D + + + E I C EKD YLYY I+++PG+T+VF N I +KR+T L
Sbjct: 350 PKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRYPGKTMVFANGIEDIKRITPFL 409
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
LK PLHA ++Q++RL++L++F++ +L+ TDVAARG+DIP + HVIHYHVP T
Sbjct: 410 NELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHT 469
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
+++Y+HRSGRTARAN +G+++++ E+
Sbjct: 470 ADMYVHRSGRTARANEDGVSILMCGPKEL 498
Score = 241 (89.9 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 56/125 (44%), Positives = 80/125 (64%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
AL++APTRELA Q+ H + K +P ++V + GG++ +KQ R+LNK PH++VATPGRL
Sbjct: 195 ALVVAPTRELAHQICQHF-ELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRL 253
Query: 321 WEFIQLGHFHLTELYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
W I + LT +K I LV+DE DR+++ HF EL +L+ + +Q RQT I S
Sbjct: 254 WSVINENN--LTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQ-RQTFIFS 310
Query: 380 GHFPE 384
F E
Sbjct: 311 ATFDE 315
Score = 157 (60.3 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 752 LLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVG 811
L E D N+ V ++ W F++ ++ +L + GF P IQS+V+P A + DI+G
Sbjct: 108 LEEEDEHNSHG--VDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGF-DIIG 164
Query: 812 AAETGSGKTLAFGIPIL 828
A+TGSGKTLAFGIPIL
Sbjct: 165 KADTGSGKTLAFGIPIL 181
Score = 157 (60.3 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 135 LLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVG 194
L E D N+ V ++ W F++ ++ +L + GF P IQS+V+P A + DI+G
Sbjct: 108 LEEEDEHNSHG--VDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGF-DIIG 164
Query: 195 AAETGSGKTLAFGIPIL 211
A+TGSGKTLAFGIPIL
Sbjct: 165 KADTGSGKTLAFGIPIL 181
Score = 151 (58.2 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
Identities = 32/92 (34%), Positives = 58/92 (63%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDESVLSLIKK 1296
D ++HRSGRTARAN +G+++++ E+ ++ L+KK++ +FP+D S+L ++K
Sbjct: 471 DMYVHRSGRTARANEDGVSILMCGPKELSQLKRLCYRLKKKIETFINFPVDMSILDILKT 530
Query: 1297 RIDLAKSIEYLESKIKK-NRPDNWLEKAAKDM 1327
R+ LA I L K + R + WL+ A+++
Sbjct: 531 RVVLAHKIVNLTRKDGRVGREEAWLKSMAQEL 562
Score = 148 (57.2 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
Identities = 32/69 (46%), Positives = 48/69 (69%)
Query: 1348 RNLRYSW-DALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPH 1405
RN+ + AL++APTRELA Q+ H + K +P ++V + GG++ +KQ R+LNK PH
Sbjct: 186 RNVDAKYVQALVVAPTRELAHQICQHF-ELIKPSPNIRVMSITGGLAVQKQQRLLNKHPH 244
Query: 1406 ILVATPGAL 1414
++VATPG L
Sbjct: 245 VVVATPGRL 253
Score = 138 (53.6 bits), Expect = 4.1e-27, Sum P(3) = 4.1e-27
Identities = 38/137 (27%), Positives = 63/137 (45%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDP 435
+++ HF EL +L+ + +Q RQTF+FSAT P
Sbjct: 280 LLQKSHFEELSKLLEILGNPMHTQ-RQTFIFSATFDEGLQQRLKKNMKGNITEKYNS--P 336
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL--C 493
L+++ PK +D + + + E I C EKD YLYY I+++PG+T+
Sbjct: 337 MENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRYPGKTMVFA 396
Query: 494 EEIQDLLNIKSPKIVDL 510
I+D+ I +P + +L
Sbjct: 397 NGIEDIKRI-TPFLNEL 412
Score = 46 (21.3 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 1257 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1316
LVL E+D + L F L K +++ P+ + I A E L+ ++KKN
Sbjct: 272 LVLDEADRL-LQKSHFEELSKLLEILGNPMHTQRQTFIFS----ATFDEGLQQRLKKNMK 326
Query: 1317 DNWLEK 1322
N EK
Sbjct: 327 GNITEK 332
Score = 37 (18.1 bits), Expect = 1.7e-26, Sum P(3) = 1.7e-26
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1426 EYLESKIKKNRPDNWLEK 1443
E L+ ++KKN N EK
Sbjct: 315 EGLQQRLKKNMKGNITEK 332
>UNIPROTKB|I3LKU6 [details] [associations]
symbol:LOC100620190 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00550000074847 EMBL:CU468306
Ensembl:ENSSSCT00000028542 OMA:FANTIDC Uniprot:I3LKU6
Length = 373
Score = 816 (292.3 bits), Expect = 1.3e-80, P = 1.3e-80
Identities = 164/343 (47%), Positives = 233/343 (67%)
Query: 905 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964
+K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ HL+ L ++ LVIDE DR
Sbjct: 20 IKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKQPHLSNLRQLRCLVIDEADR 79
Query: 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HXXXXXXXXXXXXXXXXXXXXX 1022
M+E GHF EL +L+ + ++ + RQT VFSATLT H
Sbjct: 80 MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHAKKIDKTAKL 139
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082
D ++++ + K PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGRTLV
Sbjct: 140 DLLMQKIG--MRGK-PKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLV 196
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLD
Sbjct: 197 FANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLATDVAARGLD 256
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
IP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+L+ +++ + K++ +L+K D+
Sbjct: 257 IPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLVGPEDVINFKKIYKTLKKDEDI 316
Query: 1203 PDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRS 1244
P FP+ + +K+RI LA+ IE E + + ++W+ ++
Sbjct: 317 PLFPVQTKYMDAVKERIRLARQIEKAEYRNFQACLHNSWIEQA 359
Score = 503 (182.1 bits), Expect = 3.1e-69, Sum P(2) = 3.1e-69
Identities = 93/149 (62%), Positives = 121/149 (81%)
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL
Sbjct: 152 PKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLL 211
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
+L PL LHA M+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRT
Sbjct: 212 KVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRT 271
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
SEIY+HRSGRTARA NEGL+++L+ +++
Sbjct: 272 SEIYVHRSGRTARATNEGLSLMLVGPEDV 300
Score = 241 (89.9 bits), Expect = 3.1e-69, Sum P(2) = 3.1e-69
Identities = 45/92 (48%), Positives = 66/92 (71%)
Query: 288 VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347
+K A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ HL+ L ++ LVIDE DR
Sbjct: 20 IKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKQPHLSNLRQLRCLVIDEADR 79
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIES 379
M+E GHF EL +L+ + ++ + RQT++ S
Sbjct: 80 MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFS 111
Score = 215 (80.7 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 52/140 (37%), Positives = 74/140 (52%)
Query: 355 PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--H 412
P L N+ + R M+E GHF EL +L+ + ++ + RQT VFSATLT H
Sbjct: 61 PHLSNLRQLRCLVIDEADR--MVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVH 118
Query: 413 XXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472
D ++++ + K PK++DLT +TLTE+KI C+
Sbjct: 119 QAPARILHKKHAKKIDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEATVETLTETKIHCE 175
Query: 473 HDEKDSYLYYFILQHPGRTL 492
DEKD YLYYF++Q+PGRTL
Sbjct: 176 TDEKDLYLYYFLMQYPGRTL 195
Score = 179 (68.1 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 47/156 (30%), Positives = 91/156 (58%)
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKV-DLPDFP-IDESVL---SLIKKRIDLAKSIEYLE 1229
GL VL D +PL + ++++ +L F +++ VL + + +D+ K +
Sbjct: 209 GLLKVL---DIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIH 265
Query: 1230 SKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1289
++ + + ++HRSGRTARA NEGL+L+L+ +++ + K++ +L+K D+P FP+
Sbjct: 266 YQVPRTS-EIYVHRSGRTARATNEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTK 324
Query: 1290 VLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLEKAA 1324
+ +K+RI LA+ IE E + + ++W+E+AA
Sbjct: 325 YMDAVKERIRLARQIEKAEYRNFQACLHNSWIEQAA 360
Score = 45 (20.9 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 1217 KRIDLAKSIEYLESKI-KKNRPDNW-LHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1272
K+ID ++ L KI + +P L R+ T E T + E+DE LY+ F
Sbjct: 131 KKIDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTE--TKIHCETDEKDLYLYYF 186
>CGD|CAL0005900 [details] [associations]
symbol:MAK5 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0005900 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
RefSeq:XP_714899.1 RefSeq:XP_714962.1 ProteinModelPortal:Q59ZH9
STRING:Q59ZH9 GeneID:3643358 GeneID:3643454 KEGG:cal:CaO19.11024
KEGG:cal:CaO19.3540 Uniprot:Q59ZH9
Length = 782
Score = 619 (223.0 bits), Expect = 2.8e-73, Sum P(3) = 2.8e-73
Identities = 150/400 (37%), Positives = 227/400 (56%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPH 928
K N +I APTRELA QV +H+ KY+P+ + + GG+S +KQ R+L P
Sbjct: 273 KKINHPTGIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPG 332
Query: 929 ILVATPGRLWEFIQLGHFHLTE-LYKINYLVIDETDRMIESGHFPELKNILD-----RVT 982
I+VATPGR+ E +Q G L + L I+ +V+DE DR+++ GHF E + IL+ R
Sbjct: 333 IIVATPGRMLELVQ-GDSELAKRLASIDIIVLDEADRLLQDGHFDEFEKILELFGKNRPK 391
Query: 983 MTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKS--PKI 1040
QT VFSAT + D ++ L + L K P +
Sbjct: 392 SKSIEWKWQTLVFSATFSRDLFRKLDRHQKGKSSSLMGN-DEIVQLLNEKLKFKDKKPTL 450
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
VD K ++ +TE+ + C E+D YLYYF+L + G TLVF NSI SVKRL LL L
Sbjct: 451 VDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGSTLVFANSIDSVKRLVPLLNNL 510
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRD--QNN--SILLATDVAARGLDIPGIEHVIHYHVPR 1156
+H+SM Q+QRL+ L++F++ Q N ++L+A+DVAARGLDIP I+HV+HYH+PR
Sbjct: 511 NIPAFSIHSSMIQKQRLRALEKFKEASQKNEVAVLVASDVAARGLDIPNIDHVVHYHLPR 570
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEI--PLY-IKMF---NS-LEKKVDLPD----F 1205
++++YIHRSGRTARA EG++ + E PL ++ NS E ++++ +
Sbjct: 571 SADVYIHRSGRTARAGKEGVSAMFCSPQEASGPLRKLRRLVAGNSNKESRLNMHNDVKLL 630
Query: 1206 PIDESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLHRS 1244
PI+ ++S IK R++++ + S + D+W+ ++
Sbjct: 631 PIEMDLVSQIKPRVEISSKLADASISSTATRKEDSWVKQA 670
Score = 398 (145.2 bits), Expect = 5.6e-63, Sum P(4) = 5.6e-63
Identities = 84/175 (48%), Positives = 117/175 (66%)
Query: 494 EEIQDLLNIK------SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547
+EI LLN K P +VD K ++ +TE+ + C E+D YLYYF+L + G T
Sbjct: 431 DEIVQLLNEKLKFKDKKPTLVDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGST 490
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNN--SILLATDV 603
LVF NSI SVKRL LL L +H+SM Q+QRL+ L++F++ Q N ++L+A+DV
Sbjct: 491 LVFANSIDSVKRLVPLLNNLNIPAFSIHSSMIQKQRLRALEKFKEASQKNEVAVLVASDV 550
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI--PLK 656
AARGLDIP I+HV+HYH+PR++++YIHRSGRTARA EG++ + E PL+
Sbjct: 551 AARGLDIPNIDHVVHYHLPRSADVYIHRSGRTARAGKEGVSAMFCSPQEASGPLR 605
Score = 222 (83.2 bits), Expect = 5.6e-63, Sum P(4) = 5.6e-63
Identities = 51/128 (39%), Positives = 77/128 (60%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGMSTEKQLRILNKCPH 311
K N +I APTRELA QV +H+ KY+P+ + + GG+S +KQ R+L P
Sbjct: 273 KKINHPTGIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPG 332
Query: 312 ILVATPGRLWEFIQLGHFHLTE-LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
I+VATPGR+ E +Q G L + L I+ +V+DE DR+++ GHF E + IL+ + +
Sbjct: 333 IIVATPGRMLELVQ-GDSELAKRLASIDIIVLDEADRLLQDGHFDEFEKILE---LFGKN 388
Query: 371 QPRQTMIE 378
+P+ IE
Sbjct: 389 RPKSKSIE 396
Score = 140 (54.3 bits), Expect = 5.6e-63, Sum P(4) = 5.6e-63
Identities = 44/143 (30%), Positives = 68/143 (47%)
Query: 81 QNPSQVEVSELSANTNDPDDQVN-KTEEIQSDEPSSXXXXXXXXXXXTYTSANKELLEVD 139
+ + E E + +D ++Q + T E S+ + AN +L D
Sbjct: 127 EEEEEEEEEEFAGFEDDENNQEDANTSERVSNNDKDDKLAESNDELNAVSFANLDLPLPD 186
Query: 140 TSNNEDMFVQMAEWVKFNIPETI----IRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 195
+NE + + W + ++ +I + L Q FK PT IQ +P AL + KD++G
Sbjct: 187 --DNE---INLPNWQEGDLGSSISAYTLYGLSQLDFKKPTPIQKETIPIAL-SGKDVIGK 240
Query: 196 AETGSGKTLAFGIPILTGIVNKL 218
A TGSGKTLA+GIPIL + L
Sbjct: 241 ATTGSGKTLAYGIPILEKYIQSL 263
Score = 139 (54.0 bits), Expect = 2.8e-73, Sum P(3) = 2.8e-73
Identities = 44/143 (30%), Positives = 68/143 (47%)
Query: 698 QNPSQVEVSELSANTNDPDDQVN-KTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVD 756
+ + E E + +D ++Q + T E S+ + AN +L D
Sbjct: 127 EEEEEEEEEEFAGFEDDENNQEDANTSERVSNNDKDDKLAESNDELNAVSFANLDLPLPD 186
Query: 757 TSNNEDMFVQMAEWVKFNIPETI----IRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 812
+NE + + W + ++ +I + L Q FK PT IQ +P AL + KD++G
Sbjct: 187 --DNE---INLPNWQEGDLGSSISAYTLYGLSQLDFKKPTPIQKETIPIAL-SGKDVIGK 240
Query: 813 AETGSGKTLAFGIPILTGIVNKL 835
A TGSGKTLA+GIPIL + L
Sbjct: 241 ATTGSGKTLAYGIPILEKYIQSL 263
Score = 138 (53.6 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 38/101 (37%), Positives = 58/101 (57%)
Query: 1335 NLIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVK---VACVVGGM 1391
NLI+ N + + + + +I APTRELA QV +H+ KY+P+ + + GG+
Sbjct: 264 NLIKQNN----KDKKINHP-TGIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGL 318
Query: 1392 STEKQLRILNKCPHILVATPGA-LSLKRID--LAKSIEYLE 1429
S +KQ R+L P I+VATPG L L + D LAK + ++
Sbjct: 319 SIQKQQRLLRHGPGIIVATPGRMLELVQGDSELAKRLASID 359
Score = 128 (50.1 bits), Expect = 9.0e-15, Sum P(3) = 9.0e-15
Identities = 43/164 (26%), Positives = 70/164 (42%)
Query: 340 LVIDETDRMIE--SGHFPELKNI--LDRVTMTETSQPRQTMIESGHFPELKNILD----- 390
+++ RM+E G K + +D + + E + +++ GHF E + IL+
Sbjct: 333 IIVATPGRMLELVQGDSELAKRLASIDIIVLDEADR----LLQDGHFDEFEKILELFGKN 388
Query: 391 RVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKS-- 448
R QT VFSAT + D ++ L + L K
Sbjct: 389 RPKSKSIEWKWQTLVFSATFSRDLFRKLDRHQKGKSSSLMGN-DEIVQLLNEKLKFKDKK 447
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
P +VD K ++ +TE+ + C E+D YLYYF+L + G TL
Sbjct: 448 PTLVDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYKGSTL 491
Score = 105 (42.0 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 30/102 (29%), Positives = 57/102 (55%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI--PLY-IKMF---NS-LEKKVDLPD----FPI 1286
D ++HRSGRTARA EG++ + E PL ++ NS E ++++ + PI
Sbjct: 573 DVYIHRSGRTARAGKEGVSAMFCSPQEASGPLRKLRRLVAGNSNKESRLNMHNDVKLLPI 632
Query: 1287 DESVLSLIKKRIDLAKSIEYLE-SKIKKNRPDNWLEKAAKDM 1327
+ ++S IK R++++ + S + D+W+++AA+D+
Sbjct: 633 EMDLVSQIKPRVEISSKLADASISSTATRKEDSWVKQAAEDL 674
Score = 62 (26.9 bits), Expect = 5.6e-63, Sum P(4) = 5.6e-63
Identities = 22/113 (19%), Positives = 52/113 (46%)
Query: 1387 VVGGMSTEKQLRILNKCPHILVATPGALSLK-RIDLAKSIEYLE-SKIKKNRPDNWLEKA 1444
V G + E +L + N + + +K R++++ + S + D+W+++A
Sbjct: 611 VAGNSNKESRLNMHNDVKLLPIEMDLVSQIKPRVEISSKLADASISSTATRKEDSWVKQA 670
Query: 1445 AKDMXXXXXX------ENLIQPKANSRENALMSKALVSKRK-ELQSLLGKSVQ 1490
A+D+ +++I+ + +E ++SK K EL++LL ++
Sbjct: 671 AEDLGLDDLSGLEDFEDDIIKKQRKRKEGKMLSKDETKALKYELKTLLANPIK 723
Score = 49 (22.3 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 1346 ESRNLRYSWDALILAPT--RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 1403
+S+++ + W L+ + T R+L ++ H GK + + + + EK L+ +K
Sbjct: 391 KSKSIEWKWQTLVFSATFSRDLFRKLDRH--QKGKSSSLMGNDEIVQLLNEK-LKFKDKK 447
Query: 1404 PHILVATP 1411
P ++ A P
Sbjct: 448 PTLVDANP 455
Score = 45 (20.9 bits), Expect = 2.8e-73, Sum P(3) = 2.8e-73
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 81 QNPSQVE-VSELSANTNDPDDQVNKTEEIQSDEPS 114
+N S+ E +E N D +D N+T E++ ++P+
Sbjct: 80 ENKSKKEETNENGENNMDVED--NETPEVEDEKPT 112
Score = 44 (20.5 bits), Expect = 5.7e-61, Sum P(2) = 5.7e-61
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 698 QNPSQVE-VSELSANTNDPDDQVNKTEEIQSDEP 730
+N S+ E +E N D +D N+T E++ ++P
Sbjct: 80 ENKSKKEETNENGENNMDVED--NETPEVEDEKP 111
>TAIR|locus:2086775 [details] [associations]
symbol:AT3G16840 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB028608 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702 EMBL:AK318706
EMBL:AY045669 EMBL:AY054475 EMBL:AJ010465 IPI:IPI00535611
IPI:IPI01019866 PIR:T51744 RefSeq:NP_188307.3 UniGene:At.5723
ProteinModelPortal:Q93Y39 SMR:Q93Y39 PaxDb:Q93Y39 PRIDE:Q93Y39
GeneID:820937 KEGG:ath:AT3G16840 GeneFarm:929 TAIR:At3g16840
InParanoid:Q93Y39 OMA:DAYLYYI Genevestigator:Q93Y39
GermOnline:AT3G16840 Uniprot:Q93Y39
Length = 826
Score = 555 (200.4 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 156/499 (31%), Positives = 243/499 (48%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
E++ + + W + +++++Y+ FK PTKIQ A KD++GAAETGSGKT
Sbjct: 183 EEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKT 242
Query: 821 LAFGIPILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANT-------TEFVKKT 873
LAFG+PIL ++++ E T TE ++
Sbjct: 243 LAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENA 302
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGG----MST-EKQLRILNKCPH 928
L ++ + + Q L K P V G MS EK L L+
Sbjct: 303 AKNLSVKVVPIVGGMFSEKQERRL---KEKPEIVVATPGRLWELMSAGEKHLVELHSLSF 359
Query: 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 988
++ R+ ++ GHF EL I L + TD+ E G +K+ D V + +
Sbjct: 360 FVLDEADRM---VERGHFR--ELQSILDL-LPVTDKPNE-GKTQTVKSN-DTV-LNVPKK 410
Query: 989 PRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDP-SIKRLQDLLNIK-SPKIVDLTEK 1046
RQTFVFSAT+ + SI+ L + ++ + I+DLT
Sbjct: 411 KRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTT 470
Query: 1047 IGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPL 1105
+ + ES I C+ EKD+YLYY + H GRT+VFC S++ ++ ++ LL +L
Sbjct: 471 SILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVC 530
Query: 1106 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165
L + M QR RLK++DRFR N IL+ATD+ ARG+DI + +IHY +P ++E+Y+HR
Sbjct: 531 TLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRC 590
Query: 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
GRTARA +G ++ LIE +E + + S + + FP+D S + ++KR+ LA+ I
Sbjct: 591 GRTARAFADGCSIALIEPNETSKFYTLCKSFSME-SVKIFPLDNSYMPAVRKRLYLARQI 649
Query: 1226 EYLESKIKKNRPDN-WLHR 1243
+E K + D WL +
Sbjct: 650 YEIERKGSRENADRTWLKK 668
Score = 402 (146.6 bits), Expect = 2.6e-55, Sum P(3) = 2.6e-55
Identities = 102/257 (39%), Positives = 145/257 (56%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L ALI+ PTRELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPGR
Sbjct: 280 LRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGR 339
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
LWE + G HL EL+ +++ V+DE DRM+E GHF EL++ILD + +T+ +P +
Sbjct: 340 LWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTD--KPNE----- 392
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDP-SIK 438
G +K+ D V + + RQTFVFSAT+ + SI+
Sbjct: 393 GKTQTVKSN-DTV-LNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIE 450
Query: 439 RLQDLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTL--CE 494
L + ++ + I+DLT + + ES I C+ EKD+YLYY + H GRT+ C
Sbjct: 451 VLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCT 510
Query: 495 EIQDLLNIKSP-KIVDL 510
+ DL +I KI+ L
Sbjct: 511 SVTDLRHISGLLKILGL 527
Score = 352 (129.0 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 67/147 (45%), Positives = 98/147 (66%)
Query: 507 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLT 565
I+DLT + + ES I C+ EKD+YLYY + H GRT+VFC S++ ++ ++ LL
Sbjct: 464 IIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLK 523
Query: 566 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625
+L L + M QR RLK++DRFR N IL+ATD+ ARG+DI + +IHY +P ++
Sbjct: 524 ILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSA 583
Query: 626 EIYIHRSGRTARANNEGLTVVLIESDE 652
E+Y+HR GRTARA +G ++ LIE +E
Sbjct: 584 EVYVHRCGRTARAFADGCSIALIEPNE 610
Score = 162 (62.1 bits), Expect = 2.6e-55, Sum P(3) = 2.6e-55
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
E++ + + W + +++++Y+ FK PTKIQ A KD++GAAETGSGKT
Sbjct: 183 EEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKT 242
Query: 204 LAFGIPILTGIVNKLE 219
LAFG+PIL ++++ E
Sbjct: 243 LAFGLPILQRLLDERE 258
Score = 157 (60.3 bits), Expect = 2.5e-21, Sum P(3) = 2.5e-21
Identities = 34/59 (57%), Positives = 42/59 (71%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+ PTRELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPG L
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRL 340
Score = 143 (55.4 bits), Expect = 2.6e-55, Sum P(3) = 2.6e-55
Identities = 35/115 (30%), Positives = 62/115 (53%)
Query: 1214 LIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1273
L+ + ID+ + K+ + + ++HR GRTARA +G ++ LIE +E + +
Sbjct: 561 LVARGIDIKNVRTIIHYKLPHSA-EVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCK 619
Query: 1274 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN-WLEKAAKDM 1327
S + + FP+D S + ++KR+ LA+ I +E K + D WL+K A+ M
Sbjct: 620 SFSME-SVKIFPLDNSYMPAVRKRLYLARQIYEIERKGSRENADRTWLKKHAESM 673
Score = 75 (31.5 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 1417 KRIDLAKSIEYLESKIKKNRPDN-WLEKAAKDMXXXXXXENLIQPKA-NSRENALMSKAL 1474
KR+ LA+ I +E K + D WL+K A+ M E + + N R+ S L
Sbjct: 641 KRLYLARQIYEIERKGSRENADRTWLKKHAESMELELDDEESEEERVDNVRQRKATSARL 700
Query: 1475 VSKRKELQSLLGKSVQ 1490
++EL +LL +Q
Sbjct: 701 NKLKEELSTLLSHPMQ 716
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 316 (116.3 bits), Expect = 6.3e-53, Sum P(3) = 6.3e-53
Identities = 74/217 (34%), Positives = 123/217 (56%)
Query: 1027 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVF 1083
K++Q L ++ P ++ K L + I KD YL + + G + +VF
Sbjct: 265 KKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKYKDCYLVSILNELAGNSFMVF 324
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
C + ++ +R+ LL L + +PLH M+Q +RL L++F+ ++ S+LLATDVA+RGLDI
Sbjct: 325 CGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDI 384
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
P ++ VI++ +P S+ YIHR GRTARA G ++ + ++ L+ ++ + KK LP
Sbjct: 385 PHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEALIGKK--LP 442
Query: 1204 DFPIDESVLSLIKKRIDLAKS---IEYLESKIKKNRP 1237
FP E + ++ +R+ A+ IE ES K+ RP
Sbjct: 443 AFPTQEEEVMMLVERVSEAQRFARIEMKESSEKRKRP 479
Score = 272 (100.8 bits), Expect = 6.1e-45, Sum P(3) = 6.1e-45
Identities = 67/216 (31%), Positives = 117/216 (54%)
Query: 445 NIKSPKIVDLTEKIGITKTLTESKI--LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLN- 501
N+++ K + + E I ES++ + K +D + F T+ +++Q L
Sbjct: 219 NLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLF-----SATMTKKVQKLQRA 273
Query: 502 -IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKR 559
++ P ++ K L + I KD YL + + G + +VFC + ++ +R
Sbjct: 274 ALQDPVKCSVSSKYATVDKLQQFYIFIPSKYKDCYLVSILNELAGNSFMVFCGTCNNTQR 333
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
+ LL L + +PLH M+Q +RL L++F+ ++ S+LLATDVA+RGLDIP ++ VI++
Sbjct: 334 VALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINF 393
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+P S+ YIHR GRTARA G ++ + ++ L
Sbjct: 394 DIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVEL 429
Score = 200 (75.5 bits), Expect = 6.3e-53, Sum P(3) = 6.3e-53
Identities = 49/126 (38%), Positives = 72/126 (57%)
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
+L+ L+L PTRELA Q+ G VK A +VGG+ Q +L K PH+++ATPG
Sbjct: 147 RLHTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATPG 206
Query: 936 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFV 994
RL + ++ F+L L YLV+DE DR++ E+ IL + + R+TF+
Sbjct: 207 RLIDHMENTKGFNLRAL---KYLVMDEADRILNMDFESEVDKILKVIP-----RDRRTFL 258
Query: 995 FSATLT 1000
FSAT+T
Sbjct: 259 FSATMT 264
Score = 175 (66.7 bits), Expect = 5.9e-51, Sum P(4) = 5.9e-51
Identities = 41/104 (39%), Positives = 59/104 (56%)
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
+L+ L+L PTRELA Q+ G VK A +VGG+ Q +L K PH+++ATPG
Sbjct: 147 RLHTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATPG 206
Query: 319 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
RL + ++ F+L L YLV+DE DR++ E+ IL
Sbjct: 207 RLIDHMENTKGFNLRAL---KYLVMDEADRILNMDFESEVDKIL 247
Score = 155 (59.6 bits), Expect = 6.3e-53, Sum P(3) = 6.3e-53
Identities = 40/123 (32%), Positives = 60/123 (48%)
Query: 94 NTNDPDDQVNKTEEIQSD-EPSSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQMAE 152
NT+ P D +D E ++ T+T + L+E +T ++ E
Sbjct: 25 NTHTPADTEETNTHTPADTEETNTHTPADTEETNTHTHTEETLIE-ETVTTGEIHTSFKE 83
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ E + A Q G+K PTKIQ +P AL R D++G AETGSGKT AF +P+L
Sbjct: 84 ---LGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGR-DVIGLAETGSGKTGAFAVPVLQ 139
Query: 213 GIV 215
++
Sbjct: 140 SLL 142
Score = 152 (58.6 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 40/123 (32%), Positives = 59/123 (47%)
Query: 711 NTNDPDDQVNKTEEIQSD-EPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQMAE 769
NT+ P D +D E + T+T + L+E +T ++ E
Sbjct: 25 NTHTPADTEETNTHTPADTEETNTHTPADTEETNTHTHTEETLIE-ETVTTGEIHTSFKE 83
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ E + A Q G+K PTKIQ +P AL R D++G AETGSGKT AF +P+L
Sbjct: 84 ---LGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGR-DVIGLAETGSGKTGAFAVPVLQ 139
Query: 830 GIV 832
++
Sbjct: 140 SLL 142
Score = 130 (50.8 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 37/127 (29%), Positives = 58/127 (45%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L+L PTRELA Q+ G VK A +VGG+ Q +L K PH+++ATPG L +
Sbjct: 151 LVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATPGRL-I 209
Query: 1417 KRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
++ K K + + D L +M + +++ R L S +
Sbjct: 210 DHMENTKGFNLRALKYLVMDEADRIL-----NMDFESEVDKILKVIPRDRRTFLFSATMT 264
Query: 1476 SKRKELQ 1482
K ++LQ
Sbjct: 265 KKVQKLQ 271
Score = 108 (43.1 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ + ++ L+ ++ + KK LP FP E + ++ +R+
Sbjct: 401 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEALIGKK--LPAFPTQEEEVMMLVERV 458
Query: 1299 DLAKS---IEYLESKIKKNRP 1316
A+ IE ES K+ RP
Sbjct: 459 SEAQRFARIEMKESSEKRKRP 479
Score = 45 (20.9 bits), Expect = 5.9e-51, Sum P(4) = 5.9e-51
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 384 ELKNILDRVTMTETSQPRQTFVFSATLT 411
+ ++ +D++ + + R+TF+FSAT+T
Sbjct: 238 DFESEVDKI-LKVIPRDRRTFLFSATMT 264
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 312 (114.9 bits), Expect = 8.7e-53, Sum P(3) = 8.7e-53
Identities = 73/225 (32%), Positives = 129/225 (57%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FC 1084
I +LQ ++ +P ++ K TL ++ ++ K++YL Y + + G+T++ F
Sbjct: 270 IDKLQRA-SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFT 328
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
+ ++ +RL+ L +L+ S LH +NQ QR+ +LD F+ SIL+ATDVAARGLDIP
Sbjct: 329 RTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIP 388
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD 1204
++ V++Y +P S+ YIHR GRTARA G ++ L+ ++ L +++ L KK LP
Sbjct: 389 SVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKK--LPK 446
Query: 1205 FPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTAR 1249
+D++++ ++ +D A +E ++N+ + GR R
Sbjct: 447 ESVDKNIILTLRDSVDKANGEVVMEMN-RRNK-EKIARGKGRRGR 489
Score = 281 (104.0 bits), Expect = 7.3e-30, Sum P(2) = 7.3e-30
Identities = 70/223 (31%), Positives = 128/223 (57%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
S+++L+ L+ ++ +++D+ + + L KI+ E+ +YL+ T+ +
Sbjct: 221 SLRKLKFLVMDEADRLLDMEFGPVLDRIL---KII-PTQERTTYLF-------SATMTSK 269
Query: 496 IQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCN 552
I L ++ +P ++ K TL ++ ++ K++YL Y + + G+T++ F
Sbjct: 270 IDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTR 329
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
+ ++ +RL+ L +L+ S LH +NQ QR+ +LD F+ SIL+ATDVAARGLDIP
Sbjct: 330 TKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPS 389
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
++ V++Y +P S+ YIHR GRTARA G ++ L+ ++ L
Sbjct: 390 VDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 432
Score = 226 (84.6 bits), Expect = 8.7e-53, Sum P(3) = 8.7e-53
Identities = 51/123 (41%), Positives = 75/123 (60%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPGRL
Sbjct: 151 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRL 210
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+ ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T++FSA
Sbjct: 211 MDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLFSA 264
Query: 998 TLT 1000
T+T
Sbjct: 265 TMT 267
Score = 205 (77.2 bits), Expect = 1.4e-50, Sum P(3) = 1.4e-50
Identities = 50/135 (37%), Positives = 75/135 (55%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
YA ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPGRL
Sbjct: 151 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRL 210
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
+ ++ + L K+ +LV+DE DR+++ P +LDR+ +Q R T + S
Sbjct: 211 MDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGP----VLDRILKIIPTQERTTYLFSA 264
Query: 381 HFPELKNILDRVTMT 395
+ L R ++T
Sbjct: 265 TMTSKIDKLQRASLT 279
Score = 140 (54.3 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 42/129 (32%), Positives = 62/129 (48%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A ILAPTRELA Q++ G V+ C+VGGM+ Q R L + PHI++ATPG L
Sbjct: 152 ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRL- 210
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQP-KANSRENALMSKA 1473
+ ++ K + K + + D L DM + +++ R L S
Sbjct: 211 MDHLENTKGFSLRKLKFLVMDEADRLL-----DMEFGPVLDRILKIIPTQERTTYLFSAT 265
Query: 1474 LVSKRKELQ 1482
+ SK +LQ
Sbjct: 266 MTSKIDKLQ 274
Score = 131 (51.2 bits), Expect = 8.7e-53, Sum P(3) = 8.7e-53
Identities = 35/84 (41%), Positives = 45/84 (53%)
Query: 130 SANKELLEVDTSN-NED-MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALL 187
S +K + N NED F +E N+ +I+A + PT IQS +P AL
Sbjct: 61 SKSKSTVSTQNENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALE 117
Query: 188 ARKDIVGAAETGSGKTLAFGIPIL 211
DI+G A+TGSGKT AF IPIL
Sbjct: 118 GH-DIIGLAQTGSGKTAAFAIPIL 140
Score = 131 (51.2 bits), Expect = 8.7e-53, Sum P(3) = 8.7e-53
Identities = 35/84 (41%), Positives = 45/84 (53%)
Query: 747 SANKELLEVDTSN-NED-MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALL 804
S +K + N NED F +E N+ +I+A + PT IQS +P AL
Sbjct: 61 SKSKSTVSTQNENTNEDESFESFSE---LNLVPELIQACKNLNYSKPTPIQSKAIPPALE 117
Query: 805 ARKDIVGAAETGSGKTLAFGIPIL 828
DI+G A+TGSGKT AF IPIL
Sbjct: 118 GH-DIIGLAQTGSGKTAAFAIPIL 140
Score = 96 (38.9 bits), Expect = 5.6e-29, Sum P(3) = 5.6e-29
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 1239 NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1298
+++HR GRTARA G ++ L+ ++ L +++ L KK LP +D++++ ++ +
Sbjct: 404 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKK--LPKESVDKNIILTLRDSV 461
Query: 1299 DLAKSIEYLESKIKKNR 1315
D A +E ++N+
Sbjct: 462 DKANGEVVMEMN-RRNK 477
Score = 59 (25.8 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 384 ELKNILDRVTMTETSQPRQTFVFSATLT 411
E +LDR+ +Q R T++FSAT+T
Sbjct: 240 EFGPVLDRILKIIPTQERTTYLFSATMT 267
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 317 (116.6 bits), Expect = 5.8e-52, Sum P(3) = 5.8e-52
Identities = 71/206 (34%), Positives = 123/206 (59%)
Query: 1027 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVF 1083
K++Q L +K+P ++ K + L + I KDSYL Y + + G + ++F
Sbjct: 211 KQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMIF 270
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
C++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RGLDI
Sbjct: 271 CSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDI 330
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
P ++ VI++ +P S+ YIHR GRTARA G ++ + ++ L+ ++ + + KK LP
Sbjct: 331 PHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKK--LP 388
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLE 1229
FP+ E + ++ +R+ A+ +E
Sbjct: 389 AFPMQEEEVMMLTERVAEAQRFARME 414
Score = 284 (105.0 bits), Expect = 4.3e-45, Sum P(4) = 4.3e-45
Identities = 61/168 (36%), Positives = 102/168 (60%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++Q L +K+P ++ K + L + I KDSYL Y + + G +
Sbjct: 208 TMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSF 267
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RG
Sbjct: 268 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRG 327
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDIP ++ VI++ +P S+ YIHR GRTARA G ++ + ++ L
Sbjct: 328 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVEL 375
Score = 195 (73.7 bits), Expect = 5.8e-52, Sum P(3) = 5.8e-52
Identities = 49/126 (38%), Positives = 72/126 (57%)
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
+L+AL+L PTRELA Q+ G V A +VGG+ + Q L K PHI++ATPG
Sbjct: 93 RLFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATPG 152
Query: 936 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFV 994
RL + ++ F+L L +LV+DE DR++ E+ IL + + R+TF+
Sbjct: 153 RLVDHLENTKGFNLRAL---KFLVMDEADRILNMDFETEVDKILKVIP-----RDRKTFL 204
Query: 995 FSATLT 1000
FSAT+T
Sbjct: 205 FSATMT 210
Score = 170 (64.9 bits), Expect = 1.9e-50, Sum P(4) = 1.9e-50
Identities = 41/104 (39%), Positives = 59/104 (56%)
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
+L+AL+L PTRELA Q+ G V A +VGG+ + Q L K PHI++ATPG
Sbjct: 93 RLFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATPG 152
Query: 319 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
RL + ++ F+L L +LV+DE DR++ E+ IL
Sbjct: 153 RLVDHLENTKGFNLRAL---KFLVMDEADRILNMDFETEVDKIL 193
Score = 134 (52.2 bits), Expect = 5.8e-52, Sum P(3) = 5.8e-52
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+ + + A Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL +++
Sbjct: 32 VTDVLCEACDQLGWKVPTKIQVEAIPVALQGR-DIIGLAETGSGKTGAFALPILQALLD 89
Score = 134 (52.2 bits), Expect = 5.8e-52, Sum P(3) = 5.8e-52
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+ + + A Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL +++
Sbjct: 32 VTDVLCEACDQLGWKVPTKIQVEAIPVALQGR-DIIGLAETGSGKTGAFALPILQALLD 89
Score = 124 (48.7 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA Q+ G V A +VGG+ + Q L K PHI++ATPG L
Sbjct: 96 ALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATPGRL 154
Score = 102 (41.0 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 42/165 (25%), Positives = 77/165 (46%)
Query: 1172 NNEGLTLVLIES---DEIPLYIKMFNSLEKKV-DLPDFPIDESVLSLIKKRIDLAKSIEY 1227
NN T +L+ + IPL+ +M S K++ L F + L I +
Sbjct: 275 NNTQRTALLLRNLGFTAIPLHGQM--SQNKRLGSLNKFKAKARSILLATDVASRGLDIPH 332
Query: 1228 LESKIKKNRPDN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1284
++ I + P + ++HR GRTARA G ++ + ++ L+ ++ + + KK LP F
Sbjct: 333 VDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKK--LPAF 390
Query: 1285 PIDESVLSLIKKRIDLAKSI------EYLESKIKKNRPDNWLEKA 1323
P+ E + ++ +R+ A+ E E K +N D+ E+A
Sbjct: 391 PMQEEEVMMLTERVAEAQRFARMELREQGEKKRSRNADDDDTEEA 435
Score = 46 (21.3 bits), Expect = 6.7e-25, Sum P(5) = 6.7e-25
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 438 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
K++Q L +K+P ++ K + L + I KDSYL Y + + G +
Sbjct: 211 KQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNS 266
Score = 44 (20.5 bits), Expect = 1.9e-50, Sum P(4) = 1.9e-50
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 401 RQTFVFSATLT 411
R+TF+FSAT+T
Sbjct: 200 RKTFLFSATMT 210
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 315 (115.9 bits), Expect = 2.1e-51, Sum P(3) = 2.1e-51
Identities = 72/232 (31%), Positives = 133/232 (57%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFC 1084
+K+LQ ++K P V+++ K + L +S + KD YL + + + G + ++FC
Sbjct: 249 VKKLQRA-SLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFC 307
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
++ ++ + +L L + +PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP
Sbjct: 308 STCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIP 367
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD 1204
++ V+++ +P S+ YIHR GRTARA G + L+ +I LY ++ + L K++ L
Sbjct: 368 HVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTL-- 425
Query: 1205 FPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLT 1256
+ +E + +++R+ A+ LE K ++ H+ G ++E T
Sbjct: 426 YKCEEDEVMALQERVAEAQRTAKLELKDLEDTRGG--HKRGGDTHDDSENFT 475
Score = 286 (105.7 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 66/223 (29%), Positives = 132/223 (59%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
++K ++ L+ ++ +I+++ ++ + K L K+L + E+ ++L+ T+ ++
Sbjct: 201 NLKAIKYLVMDEADRILNMDFEVELDKIL---KVLPR--ERRTFLF-------SATMTKK 248
Query: 496 IQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCN 552
++ L ++K P V+++ K + L +S + KD YL + + + G + ++FC+
Sbjct: 249 VKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCS 308
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
+ ++ + +L L + +PLH M+Q +RL L++F+ +N SIL++TDVA+RGLDIP
Sbjct: 309 TCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPH 368
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
++ V+++ +P S+ YIHR GRTARA G + L+ +I L
Sbjct: 369 VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIEL 411
Score = 198 (74.8 bits), Expect = 2.1e-51, Sum P(3) = 2.1e-51
Identities = 53/126 (42%), Positives = 72/126 (57%)
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
+ +AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG
Sbjct: 129 RYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPG 188
Query: 936 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFV 994
RL + ++ + F+L I YLV+DE DR++ EL IL +V E R+TF+
Sbjct: 189 RLVDHLENMKGFNLKA---IKYLVMDEADRILNMDFEVELDKIL-KVLPRE----RRTFL 240
Query: 995 FSATLT 1000
FSAT+T
Sbjct: 241 FSATMT 246
Score = 172 (65.6 bits), Expect = 1.1e-48, Sum P(3) = 1.1e-48
Identities = 50/139 (35%), Positives = 72/139 (51%)
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
+ +AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG
Sbjct: 129 RYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPG 188
Query: 319 RLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
RL + ++ + F+L I YLV+DE DR++ EL IL +V E R+T +
Sbjct: 189 RLVDHLENMKGFNLKA---IKYLVMDEADRILNMDFEVELDKIL-KVLPRE----RRTFL 240
Query: 378 ESGHFPELKNILDRVTMTE 396
S + L R ++ +
Sbjct: 241 FSATMTKKVKKLQRASLKD 259
Score = 143 (55.4 bits), Expect = 2.1e-51, Sum P(3) = 2.1e-51
Identities = 43/135 (31%), Positives = 62/135 (45%)
Query: 87 EVSELSANTNDPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTYTSANKELLEVDTSNNEDM 146
E + T+D ++ + EE Q DE ++ E D + E
Sbjct: 6 EDEQTQLQTSDEEEDLGSEEE-QEDEDNNHKEGDSEAALSGEDDKGSE----DDAAEE-- 58
Query: 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206
Q W + E + +A + +K P+KIQ +P AL KD++G AETGSGKT AF
Sbjct: 59 --QKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAF 115
Query: 207 GIPILTGIVNKLENP 221
+PIL + LENP
Sbjct: 116 ALPILHAL---LENP 127
Score = 143 (55.4 bits), Expect = 2.1e-51, Sum P(3) = 2.1e-51
Identities = 43/135 (31%), Positives = 62/135 (45%)
Query: 704 EVSELSANTNDPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDM 763
E + T+D ++ + EE Q DE ++ E D + E
Sbjct: 6 EDEQTQLQTSDEEEDLGSEEE-QEDEDNNHKEGDSEAALSGEDDKGSE----DDAAEE-- 58
Query: 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 823
Q W + E + +A + +K P+KIQ +P AL KD++G AETGSGKT AF
Sbjct: 59 --QKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAF 115
Query: 824 GIPILTGIVNKLENP 838
+PIL + LENP
Sbjct: 116 ALPILHAL---LENP 127
Score = 131 (51.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 44/132 (33%), Positives = 62/132 (46%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA Q+ G +K VVGGM Q L K PHI++ATPG L
Sbjct: 132 ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 191
Query: 1415 ----SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALM 1470
++K +L K+I+YL + D L +M + +++ R L
Sbjct: 192 DHLENMKGFNL-KAIKYLVM----DEADRIL-----NMDFEVELDKILKVLPRERRTFLF 241
Query: 1471 SKALVSKRKELQ 1482
S + K K+LQ
Sbjct: 242 SATMTKKVKKLQ 253
Score = 93 (37.8 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 55/243 (22%), Positives = 110/243 (45%)
Query: 1073 ILQHPGRTLVFCNSISS-VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+L RT +F +++ VK+L + LK P+ + S N+ Q ++ L + S L
Sbjct: 231 VLPRERRTFLFSATMTKKVKKLQR--ASLK-DPVKVEVS-NKYQTVEQLQQ------SYL 280
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ + D+ + H+++ + I+ T + L L + IPL+ +
Sbjct: 281 F---IPVKYKDVY-LVHILNELAGNSFMIFCSTCNNTVKT---ALMLRALGLAAIPLHGQ 333
Query: 1192 MFNSLEKKVDLPDFPI-DESVL---SLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRT 1247
M + ++ L F + S+L + + +D+ + I + D ++HR GRT
Sbjct: 334 MSQN-KRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKD-YIHRVGRT 391
Query: 1248 ARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL 1307
ARA G + L+ +I LY ++ + L K++ L + +E + +++R+ A+ L
Sbjct: 392 ARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTL--YKCEEDEVMALQERVAEAQRTAKL 449
Query: 1308 ESK 1310
E K
Sbjct: 450 ELK 452
Score = 47 (21.6 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 389 LDRVTMTETSQPRQTFVFSATLT 411
LD++ + + R+TF+FSAT+T
Sbjct: 225 LDKI-LKVLPRERRTFLFSATMT 246
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 311 (114.5 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 72/220 (32%), Positives = 127/220 (57%)
Query: 1027 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVF 1083
K++Q L +K+P ++ K + L + I KD+YL Y + + G + ++F
Sbjct: 210 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIF 269
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
C++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RGLDI
Sbjct: 270 CSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDI 329
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
P ++ V+++ +P S+ YIHR GRTARA G + + ++ L+ ++ + + KK LP
Sbjct: 330 PHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LP 387
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
FP + + ++ +R+ A+ +E K K++R D
Sbjct: 388 GFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 427
Score = 277 (102.6 bits), Expect = 1.3e-44, Sum P(4) = 1.3e-44
Identities = 59/168 (35%), Positives = 101/168 (60%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++Q L +K+P ++ K + L + I KD+YL Y + + G +
Sbjct: 207 TMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSF 266
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 374
Score = 205 (77.2 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 51/130 (39%), Positives = 75/130 (57%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
+T +L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++
Sbjct: 88 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIII 147
Query: 932 ATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
ATPGRL + ++ F+L L YLV+DE DR++ E+ IL + + R
Sbjct: 148 ATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKILKVIP-----RDR 199
Query: 991 QTFVFSATLT 1000
+TF+FSAT+T
Sbjct: 200 KTFLFSATMT 209
Score = 180 (68.4 bits), Expect = 1.0e-49, Sum P(4) = 1.0e-49
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
+T +L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++
Sbjct: 88 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIII 147
Query: 315 ATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
ATPGRL + ++ F+L L YLV+DE DR++ E+ IL
Sbjct: 148 ATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKIL 192
Score = 131 (51.2 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 38/128 (29%), Positives = 60/128 (46%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
+ ++ K K + + D L +M + +++ R+ L S +
Sbjct: 154 IDHLENTKGFNLRALKYLVMDEADRIL-----NMDFETEVDKILKVIPRDRKTFLFSATM 208
Query: 1475 VSKRKELQ 1482
K ++LQ
Sbjct: 209 TKKVQKLQ 216
Score = 129 (50.5 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 86
Query: 218 LENP 221
LE P
Sbjct: 87 LETP 90
Score = 129 (50.5 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 86
Query: 835 LENP 838
LE P
Sbjct: 87 LETP 90
Score = 98 (39.6 bits), Expect = 6.9e-27, Sum P(3) = 6.9e-27
Identities = 37/157 (23%), Positives = 72/157 (45%)
Query: 1172 NNEGLTLVLIES---DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL 1228
NN T +L+ + IPL+ +M S ++ L F + L I ++
Sbjct: 274 NNTQRTALLLRNLGFTAIPLHGQMSQS-KRLGSLNKFKAKARSILLATDVASRGLDIPHV 332
Query: 1229 ESKIKKNRPDN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1285
+ + + P + ++HR GRTARA G + + ++ L+ ++ + + KK LP FP
Sbjct: 333 DVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPGFP 390
Query: 1286 IDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1317
+ + ++ +R+ A+ +E K K++R D
Sbjct: 391 TQDDEVMMLTERVAEAQRFARMELREHGEKKKRSRED 427
Score = 44 (20.5 bits), Expect = 1.0e-49, Sum P(4) = 1.0e-49
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 401 RQTFVFSATLT 411
R+TF+FSAT+T
Sbjct: 199 RKTFLFSATMT 209
Score = 44 (20.5 bits), Expect = 6.3e-25, Sum P(5) = 6.3e-25
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 438 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
K++Q L +K+P ++ K + L + I KD+YL Y + + G +
Sbjct: 210 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNS 265
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 309 (113.8 bits), Expect = 4.7e-51, Sum P(3) = 4.7e-51
Identities = 71/220 (32%), Positives = 127/220 (57%)
Query: 1027 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVF 1083
K++Q L +K+P ++ K + L + + KD+YL Y + + G + ++F
Sbjct: 210 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIF 269
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
C++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RGLDI
Sbjct: 270 CSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDI 329
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
P ++ V+++ +P S+ YIHR GRTARA G + + ++ L+ ++ + + KK LP
Sbjct: 330 PHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LP 387
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
FP + + ++ +R++ A+ +E K K+ R D
Sbjct: 388 VFPTQDEEVMMLTERVNEAQRFARMELREHGEKKKRKRED 427
Score = 275 (101.9 bits), Expect = 2.4e-44, Sum P(4) = 2.4e-44
Identities = 58/168 (34%), Positives = 101/168 (60%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++Q L +K+P ++ K + L + + KD+YL Y + + G +
Sbjct: 207 TMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSF 266
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 374
Score = 205 (77.2 bits), Expect = 4.7e-51, Sum P(3) = 4.7e-51
Identities = 51/130 (39%), Positives = 75/130 (57%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
+T +L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++
Sbjct: 88 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVI 147
Query: 932 ATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
ATPGRL + ++ F+L L YLV+DE DR++ E+ IL + + R
Sbjct: 148 ATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKILKVIP-----RDR 199
Query: 991 QTFVFSATLT 1000
+TF+FSAT+T
Sbjct: 200 KTFLFSATMT 209
Score = 180 (68.4 bits), Expect = 2.4e-49, Sum P(4) = 2.4e-49
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
+T +L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++
Sbjct: 88 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVI 147
Query: 315 ATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
ATPGRL + ++ F+L L YLV+DE DR++ E+ IL
Sbjct: 148 ATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKIL 192
Score = 131 (51.2 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 38/128 (29%), Positives = 60/128 (46%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
+ ++ K K + + D L +M + +++ R+ L S +
Sbjct: 154 IDHLENTKGFNLRALKYLVMDEADRIL-----NMDFETEVDKILKVIPRDRKTFLFSATM 208
Query: 1475 VSKRKELQ 1482
K ++LQ
Sbjct: 209 TKKVQKLQ 216
Score = 129 (50.5 bits), Expect = 4.7e-51, Sum P(3) = 4.7e-51
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 VTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 86
Query: 218 LENP 221
LE P
Sbjct: 87 LETP 90
Score = 129 (50.5 bits), Expect = 4.7e-51, Sum P(3) = 4.7e-51
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 VTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 86
Query: 835 LENP 838
LE P
Sbjct: 87 LETP 90
Score = 98 (39.6 bits), Expect = 6.9e-27, Sum P(3) = 6.9e-27
Identities = 37/157 (23%), Positives = 72/157 (45%)
Query: 1172 NNEGLTLVLIES---DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL 1228
NN T +L+ + IPL+ +M S ++ L F + L I ++
Sbjct: 274 NNTQRTALLLRNLGFTAIPLHGQMSQS-KRLGSLNKFKAKARSILLATDVASRGLDIPHV 332
Query: 1229 ESKIKKNRPDN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1285
+ + + P + ++HR GRTARA G + + ++ L+ ++ + + KK LP FP
Sbjct: 333 DVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFP 390
Query: 1286 IDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1317
+ + ++ +R++ A+ +E K K+ R D
Sbjct: 391 TQDEEVMMLTERVNEAQRFARMELREHGEKKKRKRED 427
Score = 44 (20.5 bits), Expect = 2.4e-49, Sum P(4) = 2.4e-49
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 401 RQTFVFSATLT 411
R+TF+FSAT+T
Sbjct: 199 RKTFLFSATMT 209
Score = 42 (19.8 bits), Expect = 1.0e-24, Sum P(5) = 1.0e-24
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 438 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
K++Q L +K+P ++ K + L + + KD+YL Y + + G +
Sbjct: 210 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNS 265
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 308 (113.5 bits), Expect = 6.5e-51, Sum P(3) = 6.5e-51
Identities = 71/220 (32%), Positives = 126/220 (57%)
Query: 1027 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVF 1083
K++Q L +K+P ++ K + L + + KD+YL Y + + G + ++F
Sbjct: 210 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIF 269
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
C++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RGLDI
Sbjct: 270 CSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDI 329
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
P ++ V+++ +P S+ YIHR GRTARA G + + ++ L+ ++ + + KK LP
Sbjct: 330 PHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LP 387
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
FP + + ++ +R+ A+ +E K K+ R D
Sbjct: 388 VFPTQDEEVMMLTERVSEAQRFARMELREHGEKKKRKRED 427
Score = 275 (101.9 bits), Expect = 2.4e-44, Sum P(4) = 2.4e-44
Identities = 58/168 (34%), Positives = 101/168 (60%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++Q L +K+P ++ K + L + + KD+YL Y + + G +
Sbjct: 207 TMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSF 266
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 374
Score = 205 (77.2 bits), Expect = 6.5e-51, Sum P(3) = 6.5e-51
Identities = 51/130 (39%), Positives = 75/130 (57%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
+T +L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++
Sbjct: 88 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVI 147
Query: 932 ATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
ATPGRL + ++ F+L L YLV+DE DR++ E+ IL + + R
Sbjct: 148 ATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKILKVIP-----RDR 199
Query: 991 QTFVFSATLT 1000
+TF+FSAT+T
Sbjct: 200 KTFLFSATMT 209
Score = 180 (68.4 bits), Expect = 3.4e-49, Sum P(4) = 3.4e-49
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
+T +L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++
Sbjct: 88 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVI 147
Query: 315 ATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
ATPGRL + ++ F+L L YLV+DE DR++ E+ IL
Sbjct: 148 ATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKIL 192
Score = 131 (51.2 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 38/128 (29%), Positives = 60/128 (46%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 153
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
+ ++ K K + + D L +M + +++ R+ L S +
Sbjct: 154 IDHLENTKGFNLRALKYLVMDEADRIL-----NMDFETEVDKILKVIPRDRKTFLFSATM 208
Query: 1475 VSKRKELQ 1482
K ++LQ
Sbjct: 209 TKKVQKLQ 216
Score = 129 (50.5 bits), Expect = 6.5e-51, Sum P(3) = 6.5e-51
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 VTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 86
Query: 218 LENP 221
LE P
Sbjct: 87 LETP 90
Score = 129 (50.5 bits), Expect = 6.5e-51, Sum P(3) = 6.5e-51
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 VTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 86
Query: 835 LENP 838
LE P
Sbjct: 87 LETP 90
Score = 97 (39.2 bits), Expect = 8.8e-27, Sum P(3) = 8.8e-27
Identities = 37/157 (23%), Positives = 71/157 (45%)
Query: 1172 NNEGLTLVLIES---DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL 1228
NN T +L+ + IPL+ +M S ++ L F + L I ++
Sbjct: 274 NNTQRTALLLRNLGFTAIPLHGQMSQS-KRLGSLNKFKAKARSILLATDVASRGLDIPHV 332
Query: 1229 ESKIKKNRPDN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1285
+ + + P + ++HR GRTARA G + + ++ L+ ++ + + KK LP FP
Sbjct: 333 DVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFP 390
Query: 1286 IDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1317
+ + ++ +R+ A+ +E K K+ R D
Sbjct: 391 TQDEEVMMLTERVSEAQRFARMELREHGEKKKRKRED 427
Score = 44 (20.5 bits), Expect = 3.4e-49, Sum P(4) = 3.4e-49
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 401 RQTFVFSATLT 411
R+TF+FSAT+T
Sbjct: 199 RKTFLFSATMT 209
Score = 42 (19.8 bits), Expect = 1.3e-24, Sum P(5) = 1.3e-24
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 438 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
K++Q L +K+P ++ K + L + + KD+YL Y + + G +
Sbjct: 210 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNS 265
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 308 (113.5 bits), Expect = 7.5e-51, Sum P(3) = 7.5e-51
Identities = 71/220 (32%), Positives = 127/220 (57%)
Query: 1027 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVF 1083
K++Q L +K+P ++ K + L + + KD+YL Y + + G + ++F
Sbjct: 212 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIF 271
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
C++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RGLDI
Sbjct: 272 CSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDI 331
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
P ++ V+++ +P S+ YIHR GRTARA G + + ++ L+ ++ + + KK LP
Sbjct: 332 PHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LP 389
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
FP + + ++ +R+ A+ +E K K++R D
Sbjct: 390 VFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRSRED 429
Score = 275 (101.9 bits), Expect = 2.7e-44, Sum P(4) = 2.7e-44
Identities = 58/168 (34%), Positives = 101/168 (60%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++Q L +K+P ++ K + L + + KD+YL Y + + G +
Sbjct: 209 TMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSF 268
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RG
Sbjct: 269 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 328
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L
Sbjct: 329 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 376
Score = 205 (77.2 bits), Expect = 7.5e-51, Sum P(3) = 7.5e-51
Identities = 51/130 (39%), Positives = 75/130 (57%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
+T +L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++
Sbjct: 90 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVI 149
Query: 932 ATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
ATPGRL + ++ F+L L YLV+DE DR++ E+ IL + + R
Sbjct: 150 ATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKILKVIP-----RDR 201
Query: 991 QTFVFSATLT 1000
+TF+FSAT+T
Sbjct: 202 KTFLFSATMT 211
Score = 180 (68.4 bits), Expect = 4.2e-49, Sum P(4) = 4.2e-49
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
+T +L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++
Sbjct: 90 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVI 149
Query: 315 ATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
ATPGRL + ++ F+L L YLV+DE DR++ E+ IL
Sbjct: 150 ATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKIL 194
Score = 131 (51.2 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 38/128 (29%), Positives = 60/128 (46%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 97 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 155
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
+ ++ K K + + D L +M + +++ R+ L S +
Sbjct: 156 IDHLENTKGFNLRALKYLVMDEADRIL-----NMDFETEVDKILKVIPRDRKTFLFSATM 210
Query: 1475 VSKRKELQ 1482
K ++LQ
Sbjct: 211 TKKVQKLQ 218
Score = 129 (50.5 bits), Expect = 7.5e-51, Sum P(3) = 7.5e-51
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 33 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 88
Query: 218 LENP 221
LE P
Sbjct: 89 LETP 92
Score = 129 (50.5 bits), Expect = 7.5e-51, Sum P(3) = 7.5e-51
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 33 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 88
Query: 835 LENP 838
LE P
Sbjct: 89 LETP 92
Score = 97 (39.2 bits), Expect = 9.1e-27, Sum P(3) = 9.1e-27
Identities = 37/157 (23%), Positives = 72/157 (45%)
Query: 1172 NNEGLTLVLIES---DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL 1228
NN T +L+ + IPL+ +M S ++ L F + L I ++
Sbjct: 276 NNTQRTALLLRNLGFTAIPLHGQMSQS-KRLGSLNKFKAKARSILLATDVASRGLDIPHV 334
Query: 1229 ESKIKKNRPDN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1285
+ + + P + ++HR GRTARA G + + ++ L+ ++ + + KK LP FP
Sbjct: 335 DVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFP 392
Query: 1286 IDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1317
+ + ++ +R+ A+ +E K K++R D
Sbjct: 393 TQDDEVMMLTERVTEAQRFARMELREHGEKKKRSRED 429
Score = 44 (20.5 bits), Expect = 4.2e-49, Sum P(4) = 4.2e-49
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 401 RQTFVFSATLT 411
R+TF+FSAT+T
Sbjct: 201 RKTFLFSATMT 211
Score = 42 (19.8 bits), Expect = 1.3e-24, Sum P(5) = 1.3e-24
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 438 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
K++Q L +K+P ++ K + L + + KD+YL Y + + G +
Sbjct: 212 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNS 267
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 311 (114.5 bits), Expect = 2.0e-50, Sum P(3) = 2.0e-50
Identities = 63/199 (31%), Positives = 116/199 (58%)
Query: 1034 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKR 1092
++ +P V ++ K TL S I H K+ YL Y + + G++ ++F ++ +R
Sbjct: 241 SLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAGQSAIIFTTTVHETQR 300
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152
+ +L L +PLH ++Q RL L +FR ++ IL+ATDVAARGLDIP ++ V ++
Sbjct: 301 VAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNF 360
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVL 1212
+P S+ YIHR GRTARA G+ + + ++ +++++ ++L KK LP++ +++ +
Sbjct: 361 DLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIEHALSKK--LPEYQVEKDEV 418
Query: 1213 SLIKKRIDLAKSIEYLESK 1231
++ +R+ A +E K
Sbjct: 419 MVMSERVAEASRQATIEMK 437
Score = 273 (101.2 bits), Expect = 4.7e-29, Sum P(3) = 4.7e-29
Identities = 56/166 (33%), Positives = 95/166 (57%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++ L ++ +P V ++ K TL S I H K+ YL Y + + G++
Sbjct: 229 TMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAGQSA 288
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++F ++ +R+ +L L +PLH ++Q RL L +FR ++ IL+ATDVAARG
Sbjct: 289 IIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARG 348
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LDIP ++ V ++ +P S+ YIHR GRTARA G+ + + ++
Sbjct: 349 LDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDV 394
Score = 194 (73.4 bits), Expect = 2.0e-50, Sum P(3) = 2.0e-50
Identities = 49/124 (39%), Positives = 70/124 (56%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L+ L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPGR
Sbjct: 115 LFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGR 174
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + L + YL IDE DR+++ L I+ R+ + T R T++FS
Sbjct: 175 LLDHLE--NTKGFSLRNLKYLAIDEADRLLDMDFGESLDKII-RI-LPRT---RHTYLFS 227
Query: 997 ATLT 1000
AT++
Sbjct: 228 ATMS 231
Score = 182 (69.1 bits), Expect = 3.7e-49, Sum P(3) = 3.7e-49
Identities = 54/148 (36%), Positives = 75/148 (50%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L+ L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPGR
Sbjct: 115 LFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGR 174
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIES--GH-FPELKNILDRVTMTET-SQPRQT 375
L + ++ + L + YL IDE DR+++ G ++ IL R T S T
Sbjct: 175 LLDHLE--NTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATMST 232
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQT 403
+ES L N + RV+++ Q T
Sbjct: 233 KVESLQRASLSNPV-RVSVSSKYQTVST 259
Score = 142 (55.0 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 43/127 (33%), Positives = 59/127 (46%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L+LAPTRELA Q+ G V+ A +VGGM Q L K PHI+VATPG L L
Sbjct: 118 LVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRL-L 176
Query: 1417 KRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
++ K K + + D L DM + +I+ +R L S +
Sbjct: 177 DHLENTKGFSLRNLKYLAIDEADRLL-----DMDFGESLDKIIRILPRTRHTYLFSATMS 231
Query: 1476 SKRKELQ 1482
+K + LQ
Sbjct: 232 TKVESLQ 238
Score = 134 (52.2 bits), Expect = 2.0e-50, Sum P(3) = 2.0e-50
Identities = 31/79 (39%), Positives = 43/79 (54%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
E TS E + + I + + A G+K PT IQS +P AL R D++G A
Sbjct: 34 ETQTSGEEP--APAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGR-DVIGLA 90
Query: 197 ETGSGKTLAFGIPILTGIV 215
ETGSGKT AF +P+L ++
Sbjct: 91 ETGSGKTAAFALPMLQALM 109
Score = 134 (52.2 bits), Expect = 2.0e-50, Sum P(3) = 2.0e-50
Identities = 31/79 (39%), Positives = 43/79 (54%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
E TS E + + I + + A G+K PT IQS +P AL R D++G A
Sbjct: 34 ETQTSGEEP--APAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGR-DVIGLA 90
Query: 814 ETGSGKTLAFGIPILTGIV 832
ETGSGKT AF +P+L ++
Sbjct: 91 ETGSGKTAAFALPMLQALM 109
Score = 97 (39.2 bits), Expect = 5.6e-26, Sum P(3) = 5.6e-26
Identities = 18/71 (25%), Positives = 43/71 (60%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA G+ + + ++ +++++ ++L KK LP++ +++ + ++ +R+
Sbjct: 369 YIHRVGRTARAGKSGVAISFVTQYDVEVWLRIEHALSKK--LPEYQVEKDEVMVMSERVA 426
Query: 1300 LAKSIEYLESK 1310
A +E K
Sbjct: 427 EASRQATIEMK 437
Score = 37 (18.1 bits), Expect = 4.6e-34, Sum P(3) = 4.6e-34
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 389 LDRVTMTETSQPRQTFVFSATLT 411
LD++ + R T++FSAT++
Sbjct: 210 LDKIIRI-LPRTRHTYLFSATMS 231
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 295 (108.9 bits), Expect = 3.0e-50, Sum P(3) = 3.0e-50
Identities = 70/208 (33%), Positives = 115/208 (55%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFC 1084
+++LQ +++P ++ K TL + KD YL Y + + P T ++F
Sbjct: 209 VRKLQRAC-LRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFT 267
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
+ + L +L L +P+ M Q +RL L++F+ +IL+ TDVA+RGLDIP
Sbjct: 268 RTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIP 327
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD 1204
++ VI+Y +P S+ YIHR GRTARA G+ + L+ E+ YI++ + KK LP+
Sbjct: 328 SVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKK--LPE 385
Query: 1205 FPIDES-VLSLIKKRIDLAKSIEYLESK 1231
+P +E VLSL++ R+ AK + + K
Sbjct: 386 YPAEEDEVLSLLE-RVAEAKKLSAMNMK 412
Score = 243 (90.6 bits), Expect = 5.5e-41, Sum P(3) = 5.5e-41
Identities = 54/166 (32%), Positives = 90/166 (54%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ ++++ L +++P ++ K TL + KD YL Y + + P T
Sbjct: 204 TMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTS 263
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++F + + L +L L +P+ M Q +RL L++F+ +IL+ TDVA+RG
Sbjct: 264 MIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRG 323
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LDIP ++ VI+Y +P S+ YIHR GRTARA G+ + L+ E+
Sbjct: 324 LDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYEL 369
Score = 210 (79.0 bits), Expect = 3.0e-50, Sum P(3) = 3.0e-50
Identities = 49/124 (39%), Positives = 71/124 (57%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
+A +L+PTRELAIQ+ G ++ A +VGG+ +Q L K PH++VATPGRL
Sbjct: 91 FACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRL 150
Query: 938 WEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
W+ + F L L YLV+DE DR++ L IL+ + + R+TF+FS
Sbjct: 151 WDHMSDTKGFSLKSL---KYLVLDEADRLLNEDFEKSLNQILEEIPLE-----RKTFLFS 202
Query: 997 ATLT 1000
AT+T
Sbjct: 203 ATMT 206
Score = 184 (69.8 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 41/107 (38%), Positives = 60/107 (56%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
+A +L+PTRELAIQ+ G ++ A +VGG+ +Q L K PH++VATPGRL
Sbjct: 91 FACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRL 150
Query: 321 WEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 366
W+ + F L L YLV+DE DR++ L IL+ + +
Sbjct: 151 WDHMSDTKGFSLKSL---KYLVLDEADRLLNEDFEKSLNQILEEIPL 194
Score = 136 (52.9 bits), Expect = 3.0e-50, Sum P(3) = 3.0e-50
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + + E +++A + G+K P+KIQ+ +P AL KD++G A+TGSGKT AF IPIL
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEG-KDVIGLAQTGSGKTGAFAIPILQ 69
Query: 213 GIV 215
++
Sbjct: 70 ALL 72
Score = 136 (52.9 bits), Expect = 3.0e-50, Sum P(3) = 3.0e-50
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + + E +++A + G+K P+KIQ+ +P AL KD++G A+TGSGKT AF IPIL
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEG-KDVIGLAQTGSGKTGAFAIPILQ 69
Query: 830 GIV 832
++
Sbjct: 70 ALL 72
Score = 125 (49.1 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
A +L+PTRELAIQ+ G ++ A +VGG+ +Q L K PH++VATPG L
Sbjct: 92 ACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLW 151
Query: 1415 ----SLKRIDLAKSIEYL 1428
K L KS++YL
Sbjct: 152 DHMSDTKGFSL-KSLKYL 168
Score = 115 (45.5 bits), Expect = 6.1e-30, Sum P(3) = 6.1e-30
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 1232 IKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES-V 1290
I N D ++HR GRTARA G+ + L+ E+ YI++ + KK LP++P +E V
Sbjct: 337 IPTNSKD-YIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKK--LPEYPAEEDEV 393
Query: 1291 LSLIKKRIDLAKSIEYLESK 1310
LSL++ R+ AK + + K
Sbjct: 394 LSLLE-RVAEAKKLSAMNMK 412
Score = 50 (22.7 bits), Expect = 7.4e-28, Sum P(4) = 7.4e-28
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
+++LQ +++P ++ K TL + KD YL Y + + P T
Sbjct: 209 VRKLQRAC-LRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPEST 262
Score = 46 (21.3 bits), Expect = 3.5e-33, Sum P(3) = 3.5e-33
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 384 ELKNILDRVTMTETSQPRQTFVFSATLT 411
+ + L+++ + E R+TF+FSAT+T
Sbjct: 180 DFEKSLNQI-LEEIPLERKTFLFSATMT 206
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 307 (113.1 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 71/220 (32%), Positives = 126/220 (57%)
Query: 1027 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVF 1083
K++Q L +K+P ++ K + L + + KD+YL Y + + G + ++F
Sbjct: 236 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIF 295
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
C++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RGLDI
Sbjct: 296 CSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDI 355
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
P ++ V+++ +P S+ YIHR GRTARA G + + ++ L+ ++ + + KK LP
Sbjct: 356 PHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LP 413
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1238
FP + + ++ +R+ A+ +E K K+ R D
Sbjct: 414 VFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRTRED 453
Score = 275 (101.9 bits), Expect = 9.3e-44, Sum P(4) = 9.3e-44
Identities = 58/168 (34%), Positives = 101/168 (60%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++Q L +K+P ++ K + L + + KD+YL Y + + G +
Sbjct: 233 TMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSF 292
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RG
Sbjct: 293 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 352
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDIP ++ V+++ +P S+ YIHR GRTARA G + + ++ L
Sbjct: 353 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 400
Score = 204 (76.9 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 51/130 (39%), Positives = 75/130 (57%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
+T +L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++
Sbjct: 114 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVI 173
Query: 932 ATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
ATPGRL + ++ F+L L YLV+DE DR++ E+ IL + + R
Sbjct: 174 ATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKILKVIP-----RDR 225
Query: 991 QTFVFSATLT 1000
+TF+FSAT+T
Sbjct: 226 KTFLFSATMT 235
Score = 179 (68.1 bits), Expect = 5.0e-48, Sum P(4) = 5.0e-48
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
+T +L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++
Sbjct: 114 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVI 173
Query: 315 ATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
ATPGRL + ++ F+L L YLV+DE DR++ E+ IL
Sbjct: 174 ATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKIL 218
Score = 130 (50.8 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
Identities = 38/128 (29%), Positives = 60/128 (46%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 121 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 179
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
+ ++ K K + + D L +M + +++ R+ L S +
Sbjct: 180 IDHLENTKGFNLRALKYLVMDEADRIL-----NMDFETEVDKILKVIPRDRKTFLFSATM 234
Query: 1475 VSKRKELQ 1482
K ++LQ
Sbjct: 235 TKKVQKLQ 242
Score = 129 (50.5 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 57 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 112
Query: 218 LENP 221
LE P
Sbjct: 113 LETP 116
Score = 129 (50.5 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 57 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 112
Query: 835 LENP 838
LE P
Sbjct: 113 LETP 116
Score = 96 (38.9 bits), Expect = 2.2e-26, Sum P(3) = 2.2e-26
Identities = 37/157 (23%), Positives = 71/157 (45%)
Query: 1172 NNEGLTLVLIES---DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL 1228
NN T +L+ + IPL+ +M S ++ L F + L I ++
Sbjct: 300 NNTQRTALLLRNLGFTAIPLHGQMSQS-KRLGSLNKFKAKARSILLATDVASRGLDIPHV 358
Query: 1229 ESKIKKNRPDN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1285
+ + + P + ++HR GRTARA G + + ++ L+ ++ + + KK LP FP
Sbjct: 359 DVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK--LPVFP 416
Query: 1286 IDESVLSLIKKRIDLAKSIEYLE-----SKIKKNRPD 1317
+ + ++ +R+ A+ +E K K+ R D
Sbjct: 417 TQDDEVMMLTERVTEAQRFARMELREHGEKKKRTRED 453
Score = 44 (20.5 bits), Expect = 5.0e-48, Sum P(4) = 5.0e-48
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 401 RQTFVFSATLT 411
R+TF+FSAT+T
Sbjct: 225 RKTFLFSATMT 235
Score = 42 (19.8 bits), Expect = 3.6e-24, Sum P(5) = 3.6e-24
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 438 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
K++Q L +K+P ++ K + L + + KD+YL Y + + G +
Sbjct: 236 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNS 291
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 305 (112.4 bits), Expect = 5.7e-50, Sum P(3) = 5.7e-50
Identities = 70/207 (33%), Positives = 122/207 (58%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFC 1084
I++LQ ++ +P V ++ K L +S +L K++ L + + + G+++ VF
Sbjct: 311 IEKLQRA-SLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFT 369
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
+++ +R L +L + +PLH ++Q QRL +L++F+ +IL+ATDVAARGLDIP
Sbjct: 370 RTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIP 429
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD 1204
++ VI+Y +P S+ YIHR GRTARA G ++ LI ++ +Y+++ + L KK+ D
Sbjct: 430 SVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLGKKLPKED 489
Query: 1205 FPIDESVLSLIKKRIDLAKSIEYLESK 1231
P E VL + +D A + ++K
Sbjct: 490 KPPKE-VLDALHVHVDKATAEAIRQTK 515
Score = 272 (100.8 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 68/223 (30%), Positives = 125/223 (56%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
S+K L+ L+ ++ +++D+ + K L I ++ +YL+ T+ +
Sbjct: 263 SLKNLKYLVMDEADRLLDMDFGPALDKILKVIPI-----KRTTYLF-------SATMTNK 310
Query: 496 IQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCN 552
I+ L ++ +P V ++ K L +S +L K++ L + + + G+++ VF
Sbjct: 311 IEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTR 370
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
+++ +R L +L + +PLH ++Q QRL +L++F+ +IL+ATDVAARGLDIP
Sbjct: 371 TVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPS 430
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
++ VI+Y +P S+ YIHR GRTARA G ++ LI ++ +
Sbjct: 431 VDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEM 473
Score = 214 (80.4 bits), Expect = 5.7e-50, Sum P(3) = 5.7e-50
Identities = 47/124 (37%), Positives = 74/124 (59%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
+AL+LAPTREL Q+++ G ++ +C+VGGM Q R L + PH++VATPGR+
Sbjct: 193 FALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRI 252
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+ ++ H L + YLV+DE DR+++ P L IL + + T T++FSA
Sbjct: 253 MDHLE--HTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRT-----TYLFSA 305
Query: 998 TLTH 1001
T+T+
Sbjct: 306 TMTN 309
Score = 197 (74.4 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 52/156 (33%), Positives = 79/156 (50%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
+AL+LAPTREL Q+++ G ++ +C+VGGM Q R L + PH++VATPGR+
Sbjct: 193 FALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRI 252
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET----SQPRQTM 376
+ ++ H L + YLV+DE DR+++ P L IL + + T S
Sbjct: 253 MDHLE--HTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNK 310
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412
IE L N + RV ++ Q V S L +
Sbjct: 311 IEKLQRASLHNPV-RVAVSSKYQTADNLVQSMMLVN 345
Score = 139 (54.0 bits), Expect = 9.2e-14, Sum P(2) = 9.2e-14
Identities = 38/128 (29%), Positives = 63/128 (49%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+LAPTREL Q+++ G ++ +C+VGGM Q R L + PH++VATPG +
Sbjct: 194 ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRI- 252
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
+ ++ K K + + D L DM + +++ R L S +
Sbjct: 253 MDHLEHTKGFSLKNLKYLVMDEADRLL-----DMDFGPALDKILKVIPIKRTTYLFSATM 307
Query: 1475 VSKRKELQ 1482
+K ++LQ
Sbjct: 308 TNKIEKLQ 315
Score = 129 (50.5 bits), Expect = 5.7e-50, Sum P(3) = 5.7e-50
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
T+ + D ++ + + N+ ++ ++ F PT IQS +P AL KDI+G A+TG
Sbjct: 112 TTIDPDAELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEG-KDIIGLAQTG 170
Query: 200 SGKTLAFGIPILTGI 214
SGKT AF IPIL +
Sbjct: 171 SGKTAAFAIPILQSL 185
Score = 129 (50.5 bits), Expect = 5.7e-50, Sum P(3) = 5.7e-50
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
T+ + D ++ + + N+ ++ ++ F PT IQS +P AL KDI+G A+TG
Sbjct: 112 TTIDPDAELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEG-KDIIGLAQTG 170
Query: 817 SGKTLAFGIPILTGI 831
SGKT AF IPIL +
Sbjct: 171 SGKTAAFAIPILQSL 185
Score = 101 (40.6 bits), Expect = 1.0e-27, Sum P(3) = 1.0e-27
Identities = 54/230 (23%), Positives = 106/230 (46%)
Query: 1090 VKRLTQLL--TML-KCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDI 1143
+KR T L TM K L AS++ R+ +++ +N S++L D G
Sbjct: 296 IKRTTYLFSATMTNKIEKLQ-RASLHNPVRVAVSSKYQTADNLVQSMMLVND----GYKN 350
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
+ H+++ + + S I R+ A A L ++ + +PL+ ++ S ++ L
Sbjct: 351 TILIHLLNEFMGK-SIIVFTRT--VAHAQRTALLARILGFNAVPLHGQLSQS-QRLGSLN 406
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN---WLHRSGRTARANNEGLTLVLI 1260
F +++ + + I ++ I + P + ++HR GRTARA G ++ LI
Sbjct: 407 KFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLI 466
Query: 1261 ESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1310
++ +Y+++ + L KK+ D P E VL + +D A + ++K
Sbjct: 467 TQYDLEMYLRIESVLGKKLPKEDKPPKE-VLDALHVHVDKATAEAIRQTK 515
>ASPGD|ASPL0000042587 [details] [associations]
symbol:AN1750 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:AACD01000027 EMBL:BN001307 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14805 HOGENOM:HOG000290702 RefSeq:XP_659354.1
ProteinModelPortal:Q5BCI0 STRING:Q5BCI0 PRIDE:Q5BCI0
EnsemblFungi:CADANIAT00008396 GeneID:2875695 KEGG:ani:AN1750.2
OMA:VEEGYFA OrthoDB:EOG44J5S7 Uniprot:Q5BCI0
Length = 770
Score = 531 (192.0 bits), Expect = 1.7e-49, Sum P(2) = 1.7e-49
Identities = 165/513 (32%), Positives = 251/513 (48%)
Query: 761 EDMFVQMAEWVKFNI-PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
+D ++ W + PET+ +L + F TPT +Q +P +L D++G A TGSGK
Sbjct: 190 DDDGADISAWEPLGLSPETLT-SLSKLKFSTPTSVQKSCIPP-ILDGHDVIGKASTGSGK 247
Query: 820 TLAFGIPILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYA 879
TLAFG+PIL + + T + T E + + +Y
Sbjct: 248 TLAFGLPILEHYLERERRKTIDSEEEKEKIPIALIL--------SPTRELAHQLQKHIYG 299
Query: 880 LIL-AP---------TRELAIQVQNHILDAGKY---TPVKVACVVGGMSTEKQLRILNKC 926
LI AP T L++Q Q +L+ TP +V V+ + + +R +
Sbjct: 300 LISNAPGVNARTALLTGGLSVQKQQRLLETADIVIGTPGRVWEVL--RTGQGLIRRMQGI 357
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 986
+++ RL + GHF E ++ DR +E G P+ ++ +
Sbjct: 358 KFLVIDEADRL---LSEGHFKEVED------ILSSLDR-VEDGGPPDEEDDSSEENVVPG 407
Query: 987 SQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKS--PKIVDLT 1044
+ RQT VFSAT H S++ L LN + PK +D+
Sbjct: 408 VE-RQTLVFSATF-HRDLQQKLAGKGKWTGGDIMNKKESMEYLLQKLNFREEKPKFIDVN 465
Query: 1045 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCS 1103
+ + L E + C EKD YLY +L HP RTLVF NSIS+V+R+TQLL L+
Sbjct: 466 PVSQMAEGLKEGIVECPAMEKDLYLYTLLLYHPKHRTLVFTNSISAVRRITQLLQTLQLP 525
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
L LH+SM Q+ RL++++RF +IL+ATDVAARGLDI GI+ VIHYH PRT++
Sbjct: 526 ALALHSSMAQKARLRSVERFSSSTANPGTILVATDVAARGLDIKGIDFVIHYHAPRTADT 585
Query: 1161 YIHRSGRTARANNEGLTLVLIESDE----IPLYIKMFNSLE--KKVDLPDFPIDESVLSL 1214
Y+HRSGRTARA G ++++ +E + L K+ ++ KK+ L +D ++S
Sbjct: 586 YVHRSGRTARAGASGKSVIICSPEEMVGVVRLAAKVHANMANGKKLPLESLELDRRIVSR 645
Query: 1215 IKKRIDLAKSIEYLESKIKKNR---PDNWLHRS 1244
+++R+ LA I +S I K + DNWL +
Sbjct: 646 VRQRVVLAARIT--DSNIAKEKITTEDNWLRNA 676
Score = 374 (136.7 bits), Expect = 4.3e-40, Sum P(3) = 4.3e-40
Identities = 80/166 (48%), Positives = 109/166 (65%)
Query: 494 EEIQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVF 550
E + LN + PK +D+ + + L E + C EKD YLY +L HP RTLVF
Sbjct: 446 EYLLQKLNFREEKPKFIDVNPVSQMAEGLKEGIVECPAMEKDLYLYTLLLYHPKHRTLVF 505
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARG 607
NSIS+V+R+TQLL L+ L LH+SM Q+ RL++++RF +IL+ATDVAARG
Sbjct: 506 TNSISAVRRITQLLQTLQLPALALHSSMAQKARLRSVERFSSSTANPGTILVATDVAARG 565
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LDI GI+ VIHYH PRT++ Y+HRSGRTARA G +V++ +E+
Sbjct: 566 LDIKGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIICSPEEM 611
Score = 291 (107.5 bits), Expect = 9.7e-39, Sum P(3) = 9.7e-39
Identities = 81/237 (34%), Positives = 115/237 (48%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 318
ALIL+PTRELA Q+Q HI P + A + GG+S +KQ R+L I++ TPG
Sbjct: 280 ALILSPTRELAHQLQKHIYGLISNAPGVNARTALLTGGLSVQKQQRLLETAD-IVIGTPG 338
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
R+WE ++ G + + I +LVIDE DR++ GHF E+++IL + E P +
Sbjct: 339 RVWEVLRTGQGLIRRMQGIKFLVIDEADRLLSEGHFKEVEDILSSLDRVEDGGPPDEEDD 398
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIK 438
S +N++ V RQT VFSAT H S++
Sbjct: 399 SSE----ENVVPGVE-------RQTLVFSATF-HRDLQQKLAGKGKWTGGDIMNKKESME 446
Query: 439 RLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTL 492
L LN + PK +D+ + + L E + C EKD YLY +L HP RTL
Sbjct: 447 YLLQKLNFREEKPKFIDVNPVSQMAEGLKEGIVECPAMEKDLYLYTLLLYHPKHRTL 503
Score = 133 (51.9 bits), Expect = 9.7e-39, Sum P(3) = 9.7e-39
Identities = 36/118 (30%), Positives = 64/118 (54%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDE----IPLYIKMFNS 1274
+D+ K I+++ D ++HRSGRTARA G ++++ +E + L K+ +
Sbjct: 566 LDI-KGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIICSPEEMVGVVRLAAKVHAN 624
Query: 1275 LE--KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR---PDNWLEKAAKDM 1327
+ KK+ L +D ++S +++R+ LA I +S I K + DNWL AA+D+
Sbjct: 625 MANGKKLPLESLELDRRIVSRVRQRVVLAARIT--DSNIAKEKITTEDNWLRNAAEDL 680
Score = 130 (50.8 bits), Expect = 4.3e-40, Sum P(3) = 4.3e-40
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 144 EDMFVQMAEWVKFNI-PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
+D ++ W + PET+ +L + F TPT +Q +P +L D++G A TGSGK
Sbjct: 190 DDDGADISAWEPLGLSPETLT-SLSKLKFSTPTSVQKSCIPP-ILDGHDVIGKASTGSGK 247
Query: 203 TLAFGIPIL 211
TLAFG+PIL
Sbjct: 248 TLAFGLPIL 256
Score = 112 (44.5 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALIL+PTRELA Q+Q HI P + A + GG+S +KQ R+L I++ TPG
Sbjct: 280 ALILSPTRELAHQLQKHIYGLISNAPGVNARTALLTGGLSVQKQQRLLETAD-IVIGTPG 338
Score = 57 (25.1 bits), Expect = 1.7e-49, Sum P(2) = 1.7e-49
Identities = 27/88 (30%), Positives = 37/88 (42%)
Query: 1417 KRIDLAKSIEYLESKIKKNR---PDNWLEKAAKDMXXXXXXENLIQPKA----------- 1462
+R+ LA I +S I K + DNWL AA+D+ + Q K
Sbjct: 648 QRVVLAARIT--DSNIAKEKITTEDNWLRNAAEDLGVEYDSDEFDQAKGWGRGRGRGRQE 705
Query: 1463 NSRENALMSKA-LVSKRKELQSLLGKSV 1489
R+ SKA L R EL+ LL + V
Sbjct: 706 RDRQVGSTSKAELAGLRAELKELLSQRV 733
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 304 (112.1 bits), Expect = 6.6e-49, Sum P(3) = 6.6e-49
Identities = 67/207 (32%), Positives = 120/207 (57%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FC 1084
+++LQ ++ P V ++ K TL + + KD+YL Y + + G +++ F
Sbjct: 234 VEKLQRA-SLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFA 292
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
+++ +RL LL L S +PLH ++Q RL L++F+ S L+ATDVAARGLDIP
Sbjct: 293 RTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIP 352
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD 1204
++ VI+Y +P S+ YIHR GRTARA G ++ L+ ++ ++++ ++ KK+ +
Sbjct: 353 LVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEATIGKKMQ--E 410
Query: 1205 FPIDESVLSLIKKRIDLAKSIEYLESK 1231
+ ID+ + L+ +R+ A+ ++ K
Sbjct: 411 YEIDKEGVFLLSERVGEAQREAIIQMK 437
Score = 279 (103.3 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 72/216 (33%), Positives = 120/216 (55%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
S+K L+ L+ ++ +++D+ I K L KI+ H E+ + L+ T+ +
Sbjct: 186 SLKNLKYLIMDEADRLLDMDFGPIIDKIL---KII-PH-ERRTLLF-------SATMTSK 233
Query: 496 IQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCN 552
++ L ++ P V ++ K TL + + KD+YL Y + + G +++ F
Sbjct: 234 VEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFAR 293
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
+++ +RL LL L S +PLH ++Q RL L++F+ S L+ATDVAARGLDIP
Sbjct: 294 TVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPL 353
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
++ VI+Y +P S+ YIHR GRTARA G ++ L+
Sbjct: 354 VDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALV 389
Score = 191 (72.3 bits), Expect = 6.6e-49, Sum P(3) = 6.6e-49
Identities = 45/123 (36%), Positives = 70/123 (56%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
+A++LAPTRELA Q+ G V+ +VGGM Q L+K PH+LV TPGRL
Sbjct: 116 FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRL 175
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+ ++ + L + YL++DE DR+++ P I+D++ + R+T +FSA
Sbjct: 176 MDHLE--NTKGFSLKNLKYLIMDEADRLLDMDFGP----IIDKI-LKIIPHERRTLLFSA 228
Query: 998 TLT 1000
T+T
Sbjct: 229 TMT 231
Score = 173 (66.0 bits), Expect = 5.0e-47, Sum P(3) = 5.0e-47
Identities = 49/153 (32%), Positives = 76/153 (49%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
+A++LAPTRELA Q+ G V+ +VGGM Q L+K PH+LV TPGRL
Sbjct: 116 FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRL 175
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-----DRVTM----TETSQ 371
+ ++ + L + YL++DE DR+++ P + IL +R T+ T TS+
Sbjct: 176 MDHLE--NTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSK 233
Query: 372 PRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404
+ S H P + + + +T R F
Sbjct: 234 VEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLF 266
Score = 136 (52.9 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 40/128 (31%), Positives = 60/128 (46%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A++LAPTRELA Q+ G V+ +VGGM Q L+K PH+LV TPG L
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRL- 175
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
+ ++ K K + + D L DM + +++ + R L S +
Sbjct: 176 MDHLENTKGFSLKNLKYLIMDEADRLL-----DMDFGPIIDKILKIIPHERRTLLFSATM 230
Query: 1475 VSKRKELQ 1482
SK ++LQ
Sbjct: 231 TSKVEKLQ 238
Score = 132 (51.5 bits), Expect = 6.6e-49, Sum P(3) = 6.6e-49
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 139 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 198
D+ NNE + + + + + A + GFKTPT IQ +P +L ++D++G A+T
Sbjct: 38 DSQNNE----APKTFKELGVIDELCEACEKLGFKTPTPIQQEAIP-VVLNKRDVIGLAQT 92
Query: 199 GSGKTLAFGIPILTGIVNKLENPT 222
GSGKT AF +P++ + N NP+
Sbjct: 93 GSGKTAAFALPVIQELWN---NPS 113
Score = 132 (51.5 bits), Expect = 6.6e-49, Sum P(3) = 6.6e-49
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAET 815
D+ NNE + + + + + A + GFKTPT IQ +P +L ++D++G A+T
Sbjct: 38 DSQNNE----APKTFKELGVIDELCEACEKLGFKTPTPIQQEAIP-VVLNKRDVIGLAQT 92
Query: 816 GSGKTLAFGIPILTGIVNKLENPT 839
GSGKT AF +P++ + N NP+
Sbjct: 93 GSGKTAAFALPVIQELWN---NPS 113
Score = 86 (35.3 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 18/71 (25%), Positives = 42/71 (59%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA G ++ L+ ++ ++++ ++ KK+ ++ ID+ + L+ +R+
Sbjct: 369 YIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEATIGKKMQ--EYEIDKEGVFLLSERVG 426
Query: 1300 LAKSIEYLESK 1310
A+ ++ K
Sbjct: 427 EAQREAIIQMK 437
Score = 41 (19.5 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 388 ILDRVTMTETSQPRQTFVFSATLT 411
I+D++ + R+T +FSAT+T
Sbjct: 209 IIDKI-LKIIPHERRTLLFSATMT 231
Score = 37 (18.1 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 1073 ILQHPGRTLVFCNSISS-VKRL 1093
I+ H RTL+F +++S V++L
Sbjct: 216 IIPHERRTLLFSATMTSKVEKL 237
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 309 (113.8 bits), Expect = 4.1e-48, Sum P(3) = 4.1e-48
Identities = 66/222 (29%), Positives = 128/222 (57%)
Query: 1034 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKR 1092
+++ P V ++ + L + I + K++YL Y + +H G + +VFC + ++ +
Sbjct: 239 SLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQ 298
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152
+ +L L +PLH M+Q +RL +L++F+ + IL+ TDVAARGLDIP ++ VI+Y
Sbjct: 299 IAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINY 358
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESV 1211
+P S+ Y+HR GRTARA G+ + ++ ++ Y K+ +L KK+D ++ ++ V
Sbjct: 359 DMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKLD--EYKCVENEV 416
Query: 1212 LSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNE 1253
+ L+++ + ++ ++I+ D +SG+ R N++
Sbjct: 417 MVLVERTQEATEN-----ARIEMKEMDE-KKKSGKKRRQNDD 452
Score = 291 (107.5 bits), Expect = 9.2e-32, Sum P(2) = 9.2e-32
Identities = 64/221 (28%), Positives = 128/221 (57%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
++K L+ L+ ++ +I+++ ++ + K L K++ + E+ +YL+ T+ ++
Sbjct: 184 NLKALKFLIMDEADRILNMDFEVELDKIL---KVIPR--ERRTYLF-------SATMTKK 231
Query: 496 IQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCN 552
+ L +++ P V ++ + L + I + K++YL Y + +H G + +VFC
Sbjct: 232 VSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCA 291
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
+ ++ ++ +L L +PLH M+Q +RL +L++F+ + IL+ TDVAARGLDIP
Sbjct: 292 TCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPH 351
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
++ VI+Y +P S+ Y+HR GRTARA G+ + ++ ++
Sbjct: 352 VDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDV 392
Score = 177 (67.4 bits), Expect = 4.1e-48, Sum P(3) = 4.1e-48
Identities = 47/124 (37%), Positives = 69/124 (55%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
+ L+L PTRELA Q+ G + A +VGG+ Q L + PHI+VATPGRL
Sbjct: 114 FCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRL 173
Query: 938 WEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
+ ++ F+L L +L++DE DR++ EL IL +V E R+T++FS
Sbjct: 174 VDHLENTKGFNLKAL---KFLIMDEADRILNMDFEVELDKIL-KVIPRE----RRTYLFS 225
Query: 997 ATLT 1000
AT+T
Sbjct: 226 ATMT 229
Score = 157 (60.3 bits), Expect = 5.0e-46, Sum P(3) = 5.0e-46
Identities = 45/140 (32%), Positives = 73/140 (52%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
+ L+L PTRELA Q+ G + A +VGG+ Q L + PHI+VATPGRL
Sbjct: 114 FCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRL 173
Query: 321 WEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
+ ++ F+L L +L++DE DR++ EL IL +V E R+T + S
Sbjct: 174 VDHLENTKGFNLKAL---KFLIMDEADRILNMDFEVELDKIL-KVIPRE----RRTYLFS 225
Query: 380 GHFPELKNILDRVTMTETSQ 399
+ + L+R ++ + ++
Sbjct: 226 ATMTKKVSKLERASLRDPAR 245
Score = 137 (53.3 bits), Expect = 4.1e-48, Sum P(3) = 4.1e-48
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
E++ + ED V+ + + + + + A + G+ P+KIQ +P AL KD++G A
Sbjct: 32 EIEKDDEED--VKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQG-KDVIGLA 88
Query: 197 ETGSGKTLAFGIPILTGIVN 216
ETGSGKT AF IP+L +++
Sbjct: 89 ETGSGKTGAFAIPVLQSLLD 108
Score = 137 (53.3 bits), Expect = 5.2e-48, Sum P(4) = 5.2e-48
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
E++ + ED V+ + + + + + A + G+ P+KIQ +P AL KD++G A
Sbjct: 32 EIEKDDEED--VKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQG-KDVIGLA 88
Query: 814 ETGSGKTLAFGIPILTGIVN 833
ETGSGKT AF IP+L +++
Sbjct: 89 ETGSGKTGAFAIPVLQSLLD 108
Score = 112 (44.5 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA Q+ G + A +VGG+ Q L + PHI+VATPG L
Sbjct: 116 LVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRL 173
Score = 90 (36.7 bits), Expect = 4.9e-23, Sum P(4) = 4.9e-23
Identities = 25/95 (26%), Positives = 52/95 (54%)
Query: 1225 IEYLESKIKKNRPD---NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1281
I +++ I + P +++HR GRTARA G+ + ++ ++ Y K+ +L KK+D
Sbjct: 349 IPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKLD- 407
Query: 1282 PDFP-IDESVLSLIKKRIDLAKS--IEYLESKIKK 1313
++ ++ V+ L+++ + ++ IE E KK
Sbjct: 408 -EYKCVENEVMVLVERTQEATENARIEMKEMDEKK 441
Score = 44 (20.5 bits), Expect = 2.9e-34, Sum P(3) = 2.9e-34
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 389 LDRVTMTETSQPRQTFVFSATLT 411
LD++ + + R+T++FSAT+T
Sbjct: 208 LDKI-LKVIPRERRTYLFSATMT 229
Score = 41 (19.5 bits), Expect = 4.6e-18, Sum P(4) = 4.6e-18
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 1389 GGMSTEKQLRILNK----CPHILVATPGA---LSLKRIDL 1421
G MS EK+L LNK ILV T A L + +D+
Sbjct: 315 GQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDM 354
Score = 40 (19.1 bits), Expect = 5.2e-38, Sum P(3) = 5.2e-38
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 462 KTLTESKILC----KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507
K LT+ K++ K DE+D F + LC+ Q L +K KI
Sbjct: 21 KNLTKKKVVTEEIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKI 70
Score = 38 (18.4 bits), Expect = 6.9e-21, Sum P(4) = 6.9e-21
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 912 GGMSTEKQLRILNK 925
G MS EK+L LNK
Sbjct: 315 GQMSQEKRLGSLNK 328
Score = 38 (18.4 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 295 GGMSTEKQLRILNK 308
G MS EK+L LNK
Sbjct: 315 GQMSQEKRLGSLNK 328
Score = 37 (18.1 bits), Expect = 5.2e-48, Sum P(4) = 5.2e-48
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 518 KTLTESKILCKHDEKD 533
K LT+ K++ + EKD
Sbjct: 21 KNLTKKKVVTEEIEKD 36
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 314 (115.6 bits), Expect = 3.2e-47, Sum P(3) = 3.2e-47
Identities = 71/209 (33%), Positives = 118/209 (56%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFC 1084
+ +LQ ++ +P V + K TL + + KD YL Y + + G T++F
Sbjct: 307 VAKLQRA-SLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAYILNELAGNLTIIFT 365
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
++ +S ++ +L L +P++ M+Q +RL +L++F+ SIL+ATDVAARGLDIP
Sbjct: 366 STCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAARGLDIP 425
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD 1204
++ VI+Y VP S+ Y+HR GRTARA N G + ++ ++ +Y ++ L+KK+D
Sbjct: 426 SVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVLKKKLD--S 483
Query: 1205 FPIDESVLSLIKKRIDLAKSIEYLESKIK 1233
FP E + + +R+ A I E K K
Sbjct: 484 FPCQEETVLIFLERVQEAHRIATNELKDK 512
Score = 275 (101.9 bits), Expect = 3.2e-40, Sum P(3) = 3.2e-40
Identities = 67/214 (31%), Positives = 112/214 (52%)
Query: 445 NIKSPK--IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNI 502
N++S K I+D +++ E + K K+ Y F + + L+N
Sbjct: 259 NLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYLFSATMTSKVAKLQRASLVN- 317
Query: 503 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFCNSISSVKRLT 561
P V + K TL + + KD YL Y + + G T++F ++ +S ++
Sbjct: 318 --PVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAYILNELAGNLTIIFTSTCASSTKIA 375
Query: 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621
+L L +P++ M+Q +RL +L++F+ SIL+ATDVAARGLDIP ++ VI+Y V
Sbjct: 376 MMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDLVINYDV 435
Query: 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
P S+ Y+HR GRTARA N G + ++ ++ +
Sbjct: 436 PTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEM 469
Score = 190 (71.9 bits), Expect = 3.2e-47, Sum P(3) = 3.2e-47
Identities = 47/124 (37%), Positives = 68/124 (54%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L+ L LAPTRELA Q+ + G VK +VGG+ + Q L K PH++V +PGR
Sbjct: 188 LFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGR 247
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
+ ++ H L I Y ++DE DR+ + E+ NIL +V E R T++FS
Sbjct: 248 VLHHLE--HTKGFNLRSIKYFIMDEADRLFSADFEEEVNNIL-KVIPKE----RNTYLFS 300
Query: 997 ATLT 1000
AT+T
Sbjct: 301 ATMT 304
Score = 167 (63.8 bits), Expect = 3.8e-45, Sum P(4) = 3.8e-45
Identities = 38/102 (37%), Positives = 55/102 (53%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L+ L LAPTRELA Q+ + G VK +VGG+ + Q L K PH++V +PGR
Sbjct: 188 LFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGR 247
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
+ ++ H L I Y ++DE DR+ + E+ NIL
Sbjct: 248 VLHHLE--HTKGFNLRSIKYFIMDEADRLFSADFEEEVNNIL 287
Score = 117 (46.2 bits), Expect = 3.2e-47, Sum P(3) = 3.2e-47
Identities = 29/71 (40%), Positives = 39/71 (54%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
S E+ + + + II A + GF P +IQ +P AL R DI+G A+TGS
Sbjct: 109 SEEEEKKYENVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGR-DIIGLAQTGS 167
Query: 201 GKTLAFGIPIL 211
GKT AF IP+L
Sbjct: 168 GKTAAFVIPVL 178
Score = 117 (46.2 bits), Expect = 3.2e-47, Sum P(3) = 3.2e-47
Identities = 29/71 (40%), Positives = 39/71 (54%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
S E+ + + + II A + GF P +IQ +P AL R DI+G A+TGS
Sbjct: 109 SEEEEKKYENVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGR-DIIGLAQTGS 167
Query: 818 GKTLAFGIPIL 828
GKT AF IP+L
Sbjct: 168 GKTAAFVIPVL 178
Score = 116 (45.9 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 40/126 (31%), Positives = 57/126 (45%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L LAPTRELA Q+ + G VK +VGG+ + Q L K PH++V +PG + L
Sbjct: 191 LALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRV-L 249
Query: 1417 KRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALVS 1476
++ K L S IK D + D N+++ R L S + S
Sbjct: 250 HHLEHTKGFN-LRS-IKYFIMDEADRLFSADFEEEV--NNILKVIPKERNTYLFSATMTS 305
Query: 1477 KRKELQ 1482
K +LQ
Sbjct: 306 KVAKLQ 311
Score = 104 (41.7 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1299
++HR GRTARA N G + ++ ++ +Y ++ L+KK+D FP E + + +R+
Sbjct: 442 YVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVLKKKLD--SFPCQEETVLIFLERVQ 499
Query: 1300 LAKSIEYLESKIK 1312
A I E K K
Sbjct: 500 EAHRIATNELKDK 512
Score = 43 (20.2 bits), Expect = 3.8e-45, Sum P(4) = 3.8e-45
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 384 ELKNILDRVTMTETSQPRQTFVFSATLT 411
E+ NIL +V E R T++FSAT+T
Sbjct: 282 EVNNIL-KVIPKE----RNTYLFSATMT 304
Score = 37 (18.1 bits), Expect = 6.8e-39, Sum P(3) = 6.8e-39
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 449 PKIVDLTEKIGITK 462
P+I+D K+G K
Sbjct: 128 PQIIDACNKLGFNK 141
Score = 37 (18.1 bits), Expect = 6.8e-39, Sum P(3) = 6.8e-39
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 505 PKIVDLTEKIGITK 518
P+I+D K+G K
Sbjct: 128 PQIIDACNKLGFNK 141
>SGD|S000000346 [details] [associations]
symbol:MAK5 "Essential nucleolar protein" species:4932
"Saccharomyces cerevisiae" [GO:0000466 "maturation of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000000346 GO:GO:0005524 GO:GO:0005730
EMBL:BK006936 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000463 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000466 KO:K14805
HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847 EMBL:X78937
OrthoDB:EOG44J5S7 EMBL:Z36011 PIR:S46011 RefSeq:NP_009700.1
ProteinModelPortal:P38112 SMR:P38112 DIP:DIP-6337N IntAct:P38112
MINT:MINT-612928 STRING:P38112 PaxDb:P38112 PeptideAtlas:P38112
EnsemblFungi:YBR142W GeneID:852439 KEGG:sce:YBR142W CYGD:YBR142w
OMA:HLPRAAD NextBio:971336 Genevestigator:P38112 GermOnline:YBR142W
Uniprot:P38112
Length = 773
Score = 390 (142.3 bits), Expect = 3.1e-45, Sum P(3) = 3.1e-45
Identities = 88/217 (40%), Positives = 132/217 (60%)
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
+DL +K+ ++ + + + DE ++ ++QH L +I N K P I+D
Sbjct: 383 IDLFDKLSSSRQVKDRRFKNNEDELNA-----VIQH----LMSKIH--FNSK-PVIIDTN 430
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+ ++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L L
Sbjct: 431 PESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNLGIPA 490
Query: 572 LPLHASMNQRQRLKNLDRFRDQ-------NNS---------ILLATDVAARGLDIPGIEH 615
+H+SM Q+ RLK+L+RF+ Q N+S +L+A+DVAARGLDIPG++H
Sbjct: 491 FQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQH 550
Query: 616 VIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
VIHYH+PR+++IYIHRSGRTARA +EG++ ++ E
Sbjct: 551 VIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQE 587
Score = 377 (137.8 bits), Expect = 9.3e-44, Sum P(3) = 9.3e-44
Identities = 77/164 (46%), Positives = 108/164 (65%)
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 1097
P I+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I SVK+LT L
Sbjct: 424 PVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYL 483
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQ-------NNS---------ILLATDVAARGL 1141
L +H+SM Q+ RLK+L+RF+ Q N+S +L+A+DVAARGL
Sbjct: 484 NNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGL 543
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
DIPG++HVIHYH+PR+++IYIHRSGRTARA +EG++ ++ E
Sbjct: 544 DIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQE 587
Score = 364 (133.2 bits), Expect = 2.7e-45, Sum P(4) = 2.7e-45
Identities = 92/280 (32%), Positives = 144/280 (51%)
Query: 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK----VACVVGGMSTEKQLRI 922
+ F +K + + +LI PTRELA QV +H+ + K + + GG+S +KQ R+
Sbjct: 235 SNFSQKNKKPI-SLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRL 293
Query: 923 L--NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-- 978
L + I++ATPGR E ++ + + K+N L++DE DR+++ GHF E + I+
Sbjct: 294 LKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKH 353
Query: 979 ---DRVTMTETSQPR----QTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPS---IKR 1028
+R E S+ QT +FSAT + D I+
Sbjct: 354 LLVERRKNRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQH 413
Query: 1029 LQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 1087
L ++ S P I+D + ++ + ES I C E+D Y YYF+ PG TL+FCN+I
Sbjct: 414 LMSKIHFNSKPVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAI 473
Query: 1088 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
SVK+LT L L +H+SM Q+ RLK+L+RF+ Q+
Sbjct: 474 DSVKKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQS 513
Score = 217 (81.4 bits), Expect = 7.2e-29, Sum P(4) = 7.2e-29
Identities = 70/259 (27%), Positives = 116/259 (44%)
Query: 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK----VACVVGGMSTEKQLRI 305
+ F +K + + +LI PTRELA QV +H+ + K + + GG+S +KQ R+
Sbjct: 235 SNFSQKNKKPI-SLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRL 293
Query: 306 L--NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 363
L + I++ATPGR E ++ + + K+N L++DE DR+++ GHF E + I+
Sbjct: 294 LKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKH 353
Query: 364 VTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXX 423
+ + E + R+ S I + + T FS L
Sbjct: 354 L-LVERRKNRENSEGSS------KIWQTLIFSAT--------FSIDL-FDKLSSSRQVKD 397
Query: 424 XXXXXXXXXXDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482
+ I+ L ++ S P I+D + ++ + ES I C E+D Y YY
Sbjct: 398 RRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKESLIECPPLERDLYCYY 457
Query: 483 FILQHPGRTL--CEEIQDL 499
F+ PG TL C I +
Sbjct: 458 FLTMFPGTTLIFCNAIDSV 476
Score = 146 (56.5 bits), Expect = 2.7e-45, Sum P(4) = 2.7e-45
Identities = 41/132 (31%), Positives = 68/132 (51%)
Query: 87 EVSELSANTNDPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTYTSANKELLEVDTSNNEDM 146
E+S S +++D D+Q N E + +PS NK++ N +D+
Sbjct: 112 ELSAASYSSSDEDEQGN-IESSKLTDPSEDVDEDVDEDVLKENVFNKDI------NIDDI 164
Query: 147 F-VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTL
Sbjct: 165 SPVNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTL 223
Query: 205 AFGIPILTGIVN 216
A+GIPI+ +++
Sbjct: 224 AYGIPIVEKLIS 235
Score = 141 (54.7 bits), Expect = 8.8e-45, Sum P(4) = 8.8e-45
Identities = 40/132 (30%), Positives = 67/132 (50%)
Query: 704 EVSELSANTNDPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDM 763
E+S S +++D D+Q N E + +P NK++ N +D+
Sbjct: 112 ELSAASYSSSDEDEQGN-IESSKLTDPSEDVDEDVDEDVLKENVFNKDI------NIDDI 164
Query: 764 F-VQMAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
V + EW + TI+++L F PT+IQ +P ++ D++G A TGSGKTL
Sbjct: 165 SPVNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP-VIMQGVDVMGKASTGSGKTL 223
Query: 822 AFGIPILTGIVN 833
A+GIPI+ +++
Sbjct: 224 AYGIPIVEKLIS 235
Score = 97 (39.2 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 38/122 (31%), Positives = 58/122 (47%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK----VACVVGGMSTEKQLRIL--NKCPHILVA 1409
+LI PTRELA QV +H+ + K + + GG+S +KQ R+L + I++A
Sbjct: 246 SLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIA 305
Query: 1410 TPGA-LSLKRID--LAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRE 1466
TPG L L D L K + + I + D L+ D L++ + N RE
Sbjct: 306 TPGRFLELLEKDNTLIKRFSKVNTLIL-DEADRLLQDGHFDEFEKIIKHLLVERRKN-RE 363
Query: 1467 NA 1468
N+
Sbjct: 364 NS 365
Score = 73 (30.8 bits), Expect = 2.7e-45, Sum P(4) = 2.7e-45
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 1281 LPDFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLEKAAKDM 1327
+P PI+ +LS +++R LA + E + ++K+ DNWL+KAA ++
Sbjct: 625 VPLLPIETDILSQLRERSRLAGELADHEIASNSLRKD--DNWLKKAADEL 672
Score = 72 (30.4 bits), Expect = 2.7e-45, Sum P(4) = 2.7e-45
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDE 1264
D ++HRSGRTARA +EG++ ++ E
Sbjct: 561 DIYIHRSGRTARAGSEGVSAMICSPQE 587
Score = 60 (26.2 bits), Expect = 5.9e-44, Sum P(4) = 5.9e-44
Identities = 29/113 (25%), Positives = 52/113 (46%)
Query: 1380 TPVKVACVVGGMSTE-KQLRILNKCPHILVATPGALSLK-RIDLAKSI---EYLESKIKK 1434
T V+ + ST K ++ N P + + T L+ R LA + E + ++K
Sbjct: 601 TKNSVSTDLNSRSTNRKPIKWQNTVPLLPIETDILSQLRERSRLAGELADHEIASNSLRK 660
Query: 1435 NRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALVSKRKELQSLLGK 1487
+ DNWL+KAA ++ + K+NS + L+ +K K++Q + K
Sbjct: 661 D--DNWLKKAADELGIDVDSDEDDISKSNS-DTFLLK----NKNKKMQKTINK 706
Score = 58 (25.5 bits), Expect = 1.2e-43, Sum P(3) = 1.2e-43
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 1202 LPDFPIDESVLSLIKKRIDLAKSI---EYLESKIKKNRPDNWLHRS 1244
+P PI+ +LS +++R LA + E + ++K+ DNWL ++
Sbjct: 625 VPLLPIETDILSQLRERSRLAGELADHEIASNSLRKD--DNWLKKA 668
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 273 (101.2 bits), Expect = 1.0e-44, Sum P(3) = 1.0e-44
Identities = 68/206 (33%), Positives = 115/206 (55%)
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHPGRT 1080
++++LQ + + P + + + L + IL KD+YL + I +H +
Sbjct: 192 TLQQLQSIA-MNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAYLVHLIQTFQDEHDDWS 250
Query: 1081 LV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
++ F N+ S + LT +L + LH+ M QRQR NL +F+ IL+ATDVAAR
Sbjct: 251 IIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVFKILIATDVAAR 310
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++ VI+++ P +IYIHR GRTARA G+++ L+ +I L N++E++
Sbjct: 311 GLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL----INAIEEQ 366
Query: 1200 --VDLPDFPIDESVLSLIKKRIDLAK 1223
L +FPI+E + I ++++ +
Sbjct: 367 NQTKLKEFPIEEKEVLKILTQVNVTR 392
Score = 257 (95.5 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 63/172 (36%), Positives = 95/172 (55%)
Query: 491 TLCEEIQDLLNI--KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHP 544
TL + +Q L +I P + + + L + IL KD+YL + I +H
Sbjct: 188 TLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAYLVHLIQTFQDEHD 247
Query: 545 GRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++ F N+ S + LT +L + LH+ M QRQR NL +F+ IL+ATDV
Sbjct: 248 DWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVFKILIATDV 307
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
AARGLDIP ++ VI+++ P +IYIHR GRTARA G+++ L+ +I L
Sbjct: 308 AARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL 359
Score = 205 (77.2 bits), Expect = 1.0e-44, Sum P(3) = 1.0e-44
Identities = 49/124 (39%), Positives = 71/124 (57%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
++ L+L PTRELA Q+ GK +K +VGGM Q L+K PH++VATPGR
Sbjct: 71 VFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPHVVVATPGR 130
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + I+ L +I +L++DE DR++E G K++ V ++ RQT +FS
Sbjct: 131 LADHIRSSD--TINLNRIQFLIMDEADRLLEQGCTDFTKDL--EVILSAVPAKRQTLLFS 186
Query: 997 ATLT 1000
ATLT
Sbjct: 187 ATLT 190
Score = 185 (70.2 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 46/135 (34%), Positives = 71/135 (52%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
++ L+L PTRELA Q+ GK +K +VGGM Q L+K PH++VATPGR
Sbjct: 71 VFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPHVVVATPGR 130
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + I+ L +I +L++DE DR++E G K++ V ++ RQT++ S
Sbjct: 131 LADHIRSSD--TINLNRIQFLIMDEADRLLEQGCTDFTKDL--EVILSAVPAKRQTLLFS 186
Query: 380 GHFPELKNILDRVTM 394
+ L + M
Sbjct: 187 ATLTDTLQQLQSIAM 201
Score = 138 (53.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 42/135 (31%), Positives = 64/135 (47%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y L+L PTRELA Q+ GK +K +VGGM Q L+K PH++VATP
Sbjct: 69 YGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPHVVVATP 128
Query: 1412 GALS--LKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENAL 1469
G L+ ++ D ++ ++ I + D LE+ D E ++ R+ L
Sbjct: 129 GRLADHIRSSDTI-NLNRIQFLIM-DEADRLLEQGCTDFTKDL--EVILSAVPAKRQTLL 184
Query: 1470 MSKALVSKRKELQSL 1484
S L ++LQS+
Sbjct: 185 FSATLTDTLQQLQSI 199
Score = 117 (46.2 bits), Expect = 1.0e-44, Sum P(3) = 1.0e-44
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
MA + + E +I+ Q G PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIP-AILDGRDCMGCAKTGSGKTAAFVLP 59
Query: 210 IL 211
+L
Sbjct: 60 VL 61
Score = 117 (46.2 bits), Expect = 1.0e-44, Sum P(3) = 1.0e-44
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
MA + + E +I+ Q G PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIP-AILDGRDCMGCAKTGSGKTAAFVLP 59
Query: 827 IL 828
+L
Sbjct: 60 VL 61
Score = 90 (36.7 bits), Expect = 9.9e-25, Sum P(3) = 9.9e-25
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK--VDLPDFPIDESVLSLI 1294
P ++HR GRTARA G+++ L+ +I L N++E++ L +FPI+E + I
Sbjct: 329 PKIYIHRVGRTARAGRNGVSITLVTQYDIHL----INAIEEQNQTKLKEFPIEEKEVLKI 384
Query: 1295 KKRIDLAK 1302
++++ +
Sbjct: 385 LTQVNVTR 392
Score = 53 (23.7 bits), Expect = 6.5e-29, Sum P(3) = 6.5e-29
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
EL K ++V+ R+ + + N L+R+ + + ++E G K++ V
Sbjct: 116 ELSKKPHVVVATPGRLADHIRSSDTIN-LNRIQFLIMDEADR-LLEQGCTDFTKDL--EV 171
Query: 393 TMTETSQPRQTFVFSATLT 411
++ RQT +FSATLT
Sbjct: 172 ILSAVPAKRQTLLFSATLT 190
Score = 51 (23.0 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
D+ +GL++ HV+ R ++ +I RS T N L++ E+D +
Sbjct: 109 DMVTQGLELSKKPHVVVATPGRLAD-HI-RSSDTINLNRIQF-LIMDEADRLLEQGCTDF 165
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRS 1244
+ + +V L P L L +++ L+S I NRP W H+S
Sbjct: 166 TKDLEVILSAVPAKRQTLLF---SATLTDTLQQLQS-IAMNRPFFWEHKS 211
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 261 (96.9 bits), Expect = 1.7e-42, Sum P(4) = 1.7e-42
Identities = 56/151 (37%), Positives = 95/151 (62%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
T+ +++Q L +K+P ++ K + L + + KD+YL Y + + G +
Sbjct: 206 TMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSF 265
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++FC++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RG
Sbjct: 266 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 325
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638
LDIP ++ V+++ +P S+ YIHR GRTARA
Sbjct: 326 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARA 356
Score = 258 (95.9 bits), Expect = 3.0e-44, Sum P(3) = 3.0e-44
Identities = 56/148 (37%), Positives = 93/148 (62%)
Query: 1027 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVF 1083
K++Q L +K+P ++ K + L + + KD+YL Y + + G + ++F
Sbjct: 209 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIF 268
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
C++ ++ +R LL L + +PLH M+Q +RL +L++F+ + SILLATDVA+RGLDI
Sbjct: 269 CSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDI 328
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
P ++ V+++ +P S+ YIHR GRTARA
Sbjct: 329 PHVDVVVNFDIPTHSKDYIHRVGRTARA 356
Score = 205 (77.2 bits), Expect = 3.0e-44, Sum P(3) = 3.0e-44
Identities = 51/130 (39%), Positives = 75/130 (57%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
+T +L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++
Sbjct: 87 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVI 146
Query: 932 ATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
ATPGRL + ++ F+L L YLV+DE DR++ E+ IL + + R
Sbjct: 147 ATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKILKVIP-----RDR 198
Query: 991 QTFVFSATLT 1000
+TF+FSAT+T
Sbjct: 199 KTFLFSATMT 208
Score = 180 (68.4 bits), Expect = 1.7e-42, Sum P(4) = 1.7e-42
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
+T +L+AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++
Sbjct: 87 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVI 146
Query: 315 ATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
ATPGRL + ++ F+L L YLV+DE DR++ E+ IL
Sbjct: 147 ATPGRLIDHLENTKGFNLRAL---KYLVMDEADRILNMDFETEVDKIL 191
Score = 131 (51.2 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 38/128 (29%), Positives = 60/128 (46%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA Q+ G V+ A +VGG+ + Q L K PHI++ATPG L
Sbjct: 94 ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL- 152
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
+ ++ K K + + D L +M + +++ R+ L S +
Sbjct: 153 IDHLENTKGFNLRALKYLVMDEADRIL-----NMDFETEVDKILKVIPRDRKTFLFSATM 207
Query: 1475 VSKRKELQ 1482
K ++LQ
Sbjct: 208 TKKVQKLQ 215
Score = 129 (50.5 bits), Expect = 3.0e-44, Sum P(3) = 3.0e-44
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 30 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 85
Query: 218 LENP 221
LE P
Sbjct: 86 LETP 89
Score = 129 (50.5 bits), Expect = 3.0e-44, Sum P(3) = 3.0e-44
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 30 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 85
Query: 835 LENP 838
LE P
Sbjct: 86 LETP 89
Score = 47 (21.6 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 1172 NNEGLTLVLIES---DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYL 1228
NN T +L+ + IPL+ +M S ++ L F + L I ++
Sbjct: 273 NNTQRTALLLRNLGFTAIPLHGQMSQS-KRLGSLNKFKAKARSILLATDVASRGLDIPHV 331
Query: 1229 ESKIKKNRPDN---WLHRSGRTARA 1250
+ + + P + ++HR GRTARA
Sbjct: 332 DVVVNFDIPTHSKDYIHRVGRTARA 356
Score = 44 (20.5 bits), Expect = 1.7e-42, Sum P(4) = 1.7e-42
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 401 RQTFVFSATLT 411
R+TF+FSAT+T
Sbjct: 198 RKTFLFSATMT 208
Score = 42 (19.8 bits), Expect = 1.3e-19, Sum P(5) = 1.3e-19
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 438 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491
K++Q L +K+P ++ K + L + + KD+YL Y + + G +
Sbjct: 209 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNS 264
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 264 (98.0 bits), Expect = 6.7e-42, Sum P(3) = 6.7e-42
Identities = 63/219 (28%), Positives = 121/219 (55%)
Query: 1044 TEKIGITKTLTESKILCKHDEKDSYLYYFIL--QHPGRT-LVFCNSISSVKRLTQLLTML 1100
T+ I + TL +S I +++YL + + ++ ++ ++F N + + + +L +L
Sbjct: 222 TDNISVPSTLQQSYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLL 281
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
+ LH+ M QR+R+ +L RFR + IL+ATDVA+RGLDIP ++ VI++ +PR +
Sbjct: 282 ELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDD 341
Query: 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1220
YIHR GRTARA G ++ ++ ++ L + + + K+ + + +L IK+ D
Sbjct: 342 YIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTKLSEYEHVSENKMLEYIKEVTD 401
Query: 1221 LAK--SIEYLE---SKIKKNRPDNWLHRSGRTARANNEG 1254
+ S+E ++ + ++ R + L +G + + N G
Sbjct: 402 AKRQASLEMIDRGFGERRQKRNEKRLMANGISNKLKNSG 440
Score = 249 (92.7 bits), Expect = 4.3e-38, Sum P(3) = 4.3e-38
Identities = 51/148 (34%), Positives = 90/148 (60%)
Query: 511 TEKIGITKTLTESKILCKHDEKDSYLYYFIL--QHPGRT-LVFCNSISSVKRLTQLLTML 567
T+ I + TL +S I +++YL + + ++ ++ ++F N + + + +L +L
Sbjct: 222 TDNISVPSTLQQSYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLL 281
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
+ LH+ M QR+R+ +L RFR + IL+ATDVA+RGLDIP ++ VI++ +PR +
Sbjct: 282 ELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDD 341
Query: 628 YIHRSGRTARANNEGLTVVLIESDEIPL 655
YIHR GRTARA G ++ ++ ++ L
Sbjct: 342 YIHRVGRTARAGRSGESISIVTERDVDL 369
Score = 237 (88.5 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 60/186 (32%), Positives = 101/186 (54%)
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F N + + + +L +L+ LH+ M QR+R+ +L RFR + IL+ATDVA+RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
LDIP ++ VI++ +PR + YIHR GRTARA G ++ ++ ++ L + + + K+
Sbjct: 322 LDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTKL 381
Query: 1201 DLPDFPIDESVLSLIKKRIDLAK--SIEYL-----ESKIKKNRP-------DNWLHRSGR 1246
+ + +L IK+ D + S+E + E + K+N N L SGR
Sbjct: 382 SEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQKRNEKRLMANGISNKLKNSGR 441
Query: 1247 TARANN 1252
+A N
Sbjct: 442 KKKAKN 447
Score = 217 (81.4 bits), Expect = 6.7e-42, Sum P(3) = 6.7e-42
Identities = 53/130 (40%), Positives = 80/130 (61%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
K + ++ALIL PTRELAIQ+ G +K A +VGGM +Q L+K PH++V
Sbjct: 71 KDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVV 130
Query: 932 ATPGRLWEFIQL-GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
ATPGRL + I+ G + L +I +LV+DE DR++ S F + ++ D ++ S+ R
Sbjct: 131 ATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLL-SPTFAD--DLDDCFSVLPASEDR 187
Query: 991 QTFVFSATLT 1000
QT +F+AT+T
Sbjct: 188 QTLLFTATVT 197
Score = 198 (74.8 bits), Expect = 6.3e-40, Sum P(3) = 6.3e-40
Identities = 49/124 (39%), Positives = 75/124 (60%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
K + ++ALIL PTRELAIQ+ G +K A +VGGM +Q L+K PH++V
Sbjct: 71 KDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVV 130
Query: 315 ATPGRLWEFIQL-GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
ATPGRL + I+ G + L +I +LV+DE DR++ S F + ++ D ++ S+ R
Sbjct: 131 ATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLL-SPTFAD--DLDDCFSVLPASEDR 187
Query: 374 QTMI 377
QT++
Sbjct: 188 QTLL 191
Score = 135 (52.6 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 30/60 (50%), Positives = 38/60 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALIL PTRELAIQ+ G +K A +VGGM +Q L+K PH++VATPG L+
Sbjct: 78 ALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLA 137
Score = 87 (35.7 bits), Expect = 6.7e-42, Sum P(3) = 6.7e-42
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
PT IQ V+ + +L ++ +G A+TGSGKT AF +PI+
Sbjct: 30 PTDIQEGVI-AQILEGRNCIGGAKTGSGKTAAFALPII 66
Score = 87 (35.7 bits), Expect = 6.7e-42, Sum P(3) = 6.7e-42
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
PT IQ V+ + +L ++ +G A+TGSGKT AF +PI+
Sbjct: 30 PTDIQEGVI-AQILEGRNCIGGAKTGSGKTAAFALPII 66
Score = 82 (33.9 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 20/81 (24%), Positives = 42/81 (51%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
PD+++HR GRTARA G ++ ++ ++ L + + + K+ + + +L IK+
Sbjct: 339 PDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTKLSEYEHVSENKMLEYIKE 398
Query: 1297 RIDLAK--SIEYLESKIKKNR 1315
D + S+E ++ + R
Sbjct: 399 VTDAKRQASLEMIDRGFGERR 419
Score = 45 (20.9 bits), Expect = 4.6e-24, Sum P(3) = 4.6e-24
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 390 DRVTMTETSQPRQTFVFSATLT 411
D ++ S+ RQT +F+AT+T
Sbjct: 176 DCFSVLPASEDRQTLLFTATVT 197
Score = 44 (20.5 bits), Expect = 4.7e-37, Sum P(4) = 4.7e-37
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 455 TEKIGITKTLTESKILCKHDEKDSYLYYFI 484
T+ I + TL +S I +++YL + +
Sbjct: 222 TDNISVPSTLQQSYIFVSSQVREAYLVHLL 251
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 254 (94.5 bits), Expect = 8.7e-42, Sum P(3) = 8.7e-42
Identities = 89/309 (28%), Positives = 147/309 (47%)
Query: 1028 RLQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDE---KDSYLYYFI--LQHPGRT 1080
++ DL L++ P V + K K LT+ + + + + L Y L H RT
Sbjct: 449 KVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHR-RT 507
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F S + ++ + +L + +H S++Q QR++ L+ FRD + LLATDVA+RG
Sbjct: 508 IIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRG 567
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI-ESDEIPLYIKMFNSLEKK 1199
+DI GIE VI+Y P T E+Y+HR GRTARA G + L E D L NS +
Sbjct: 568 IDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSSAQN 627
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVL 1259
L + +D + ++K K IE LE ++K + R + A + + ++
Sbjct: 628 TKLVNRNLD---FNKVEK---FGKEIEELEPVVQKVLDEEKQERELKIAERDLKKGENIM 681
Query: 1260 IESDEI---PLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1316
DEI P + +K+ D+ L+ KK+++ + + K K +R
Sbjct: 682 KYGDEIRSRPARTWFQSEKDKQASKASEAKDKKSLAKRKKQME-KEEVPRAYKKTKNDRL 740
Query: 1317 DNWLEKAAK 1325
N +K+ K
Sbjct: 741 SN--KKSTK 747
Score = 253 (94.1 bits), Expect = 2.0e-40, Sum P(3) = 2.0e-40
Identities = 64/177 (36%), Positives = 97/177 (54%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDE---KDSYLYYFI--LQH 543
T+ +++ DL L++ P V + K K LT+ + + + + L Y L H
Sbjct: 445 TMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFH 504
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
RT++F S + ++ + +L + +H S++Q QR++ L+ FRD + LLATDV
Sbjct: 505 R-RTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDV 563
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI-ESDEIPLKTKF 659
A+RG+DI GIE VI+Y P T E+Y+HR GRTARA G + L E D LK F
Sbjct: 564 ASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVF 620
Score = 187 (70.9 bits), Expect = 8.7e-42, Sum P(3) = 8.7e-42
Identities = 46/121 (38%), Positives = 66/121 (54%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LIL PTRELA+Q + +T + V +GG+S + Q + L K P I++ATPGR +
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
++ E I +V+DE DRM+E G EL I+ + RQT +FSAT+
Sbjct: 394 HMRNSQGFTVE--NIEIMVMDEADRMLEDGFADELNEIIQACPKS-----RQTMLFSATM 446
Query: 1000 T 1000
T
Sbjct: 447 T 447
Score = 175 (66.7 bits), Expect = 1.5e-40, Sum P(3) = 1.5e-40
Identities = 48/143 (33%), Positives = 75/143 (52%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LIL PTRELA+Q + +T + V +GG+S + Q + L K P I++ATPGR +
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ E I +V+DE DRM+E G EL I+ + RQTM+ S
Sbjct: 394 HMRNSQGFTVE--NIEIMVMDEADRMLEDGFADELNEIIQACPKS-----RQTMLFSATM 446
Query: 383 PELKNILDRVTMTETSQPRQTFV 405
+ + L R+++ ++P + FV
Sbjct: 447 TDKVDDLIRLSL---NRPVRVFV 466
Score = 144 (55.7 bits), Expect = 8.7e-42, Sum P(3) = 8.7e-42
Identities = 41/119 (34%), Positives = 58/119 (48%)
Query: 105 TEEIQSDEPSSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIR 164
T++ SD S+ N E D + M + + N+ I++
Sbjct: 216 TQDFNSD--SAAGSSDSEEDEEEIAKKNAFFAEGDKEKSM-MTTTHSSFQSMNLSRPILK 272
Query: 165 ALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN-PT 222
L GF+ PT+IQ +P ALL KDIVGAA TGSGKT AF +PIL ++ + + PT
Sbjct: 273 GLSNLGFEVPTQIQDKTIPLALLG-KDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPT 330
Score = 143 (55.4 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
N+ I++ L GF+ PT+IQ +P ALL KDIVGAA TGSGKT AF +PIL ++
Sbjct: 265 NLSRPILKGLSNLGFEVPTQIQDKTIPLALLG-KDIVGAAVTGSGKTAAFIVPILERLLY 323
Query: 834 KLEN-PT 839
+ + PT
Sbjct: 324 RPKKVPT 330
Score = 133 (51.9 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 42/138 (30%), Positives = 65/138 (47%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA-LS 1415
LIL PTRELA+Q + +T + V +GG+S + Q + L K P I++ATPG +
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
R ++E +E + + D LE D +IQ SR+ L S +
Sbjct: 394 HMRNSQGFTVENIEIMVM-DEADRMLEDGFAD-----ELNEIIQACPKSRQTMLFSATMT 447
Query: 1476 SKRKELQSL-LGKSVQSY 1492
K +L L L + V+ +
Sbjct: 448 DKVDDLIRLSLNRPVRVF 465
Score = 53 (23.7 bits), Expect = 7.1e-28, Sum P(3) = 7.1e-28
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 346 DRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFV 405
D M S F ++NI + + M E + M+E G EL I+ + RQT +
Sbjct: 393 DHMRNSQGFT-VENI-EIMVMDEADR----MLEDGFADELNEIIQACPKS-----RQTML 441
Query: 406 FSATLT 411
FSAT+T
Sbjct: 442 FSATMT 447
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 249 (92.7 bits), Expect = 1.0e-41, Sum P(4) = 1.0e-41
Identities = 61/179 (34%), Positives = 96/179 (53%)
Query: 1061 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
+ D++ YL + + + GR +VF R+ + +L LH SM+Q QR+K+
Sbjct: 526 REDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKS 585
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
++ FRD N + LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 586 VESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACT 645
Query: 1180 LI-ESDEIPLYIKMFNSLEKKVDLPDFPIDESVLS-LIKKRIDLAKSIEYL--ESKIKK 1234
+ E D + + + + +D SV K D+ + I+ + E K++K
Sbjct: 646 IAAEPDRKVVKAAVKAGKAQGAKIVSRVVDPSVADDWASKAKDMEEEIDAVLEEEKLEK 704
Score = 249 (92.7 bits), Expect = 4.6e-40, Sum P(4) = 4.6e-40
Identities = 53/131 (40%), Positives = 78/131 (59%)
Query: 528 KHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ D++ YL + + + GR +VF R+ + +L LH SM+Q QR+K+
Sbjct: 526 REDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKS 585
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT-V 645
++ FRD N + LLATD+A+RGLDI G+E VI+Y P++ EIY+HR GRTARA G
Sbjct: 586 VESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACT 645
Query: 646 VLIESDEIPLK 656
+ E D +K
Sbjct: 646 IAAEPDRKVVK 656
Score = 198 (74.8 bits), Expect = 1.0e-41, Sum P(4) = 1.0e-41
Identities = 48/120 (40%), Positives = 66/120 (55%)
Query: 881 ILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEF 940
IL PTRELA+Q N YT + +VGG S +Q +L K P +++ATPGR +
Sbjct: 374 ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDH 433
Query: 941 IQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000
++ + +I LV+DE DRM+E G EL IL T + RQT +FSAT+T
Sbjct: 434 MRNSASFTVDTLEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMT 486
Score = 182 (69.1 bits), Expect = 4.6e-40, Sum P(4) = 4.6e-40
Identities = 48/129 (37%), Positives = 67/129 (51%)
Query: 264 ILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEF 323
IL PTRELA+Q N YT + +VGG S +Q +L K P +++ATPGR +
Sbjct: 374 ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDH 433
Query: 324 IQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
++ + +I LV+DE DRM+E G EL IL T + RQTM+ S
Sbjct: 434 MRNSASFTVDTLEI--LVLDEADRMLEDGFADELNEIL-----TTIPKSRQTMLFSATMT 486
Query: 384 ELKNILDRV 392
+ + L RV
Sbjct: 487 DSVDKLIRV 495
Score = 148 (57.2 bits), Expect = 1.0e-41, Sum P(4) = 1.0e-41
Identities = 41/124 (33%), Positives = 58/124 (46%)
Query: 96 NDPDDQVNKTEEIQS------DEPSSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQ 149
+D DD + ++ + + DE S + K + +ED
Sbjct: 235 DDDDDAASDSDSVATPVHHPDDEASEPDSDAESEVDAEEEAKRKAFFAPEEKTDEDAATN 294
Query: 150 MAE--WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
A+ + +FN+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF
Sbjct: 295 SAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLG-KDIVGSAVTGSGKTAAFV 353
Query: 208 IPIL 211
+PIL
Sbjct: 354 VPIL 357
Score = 143 (55.4 bits), Expect = 3.4e-41, Sum P(4) = 3.4e-41
Identities = 40/124 (32%), Positives = 57/124 (45%)
Query: 713 NDPDDQVNKTEEIQS------DEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQ 766
+D DD + ++ + + DE + K + +ED
Sbjct: 235 DDDDDAASDSDSVATPVHHPDDEASEPDSDAESEVDAEEEAKRKAFFAPEEKTDEDAATN 294
Query: 767 MAE--WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
A+ + +FN+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF
Sbjct: 295 SAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLG-KDIVGSAVTGSGKTAAFV 353
Query: 825 IPIL 828
+PIL
Sbjct: 354 VPIL 357
Score = 128 (50.1 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F R + S A IL PTRELA+Q N YT + +VGG S +Q +L K
Sbjct: 360 LLFRPRKVPTSRVA-ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKK 418
Query: 1403 CPHILVATPGA-LSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKD 1447
P +++ATPG + R + +++ LE + + D LE D
Sbjct: 419 RPDVIIATPGRFIDHMRNSASFTVDTLEILVL-DEADRMLEDGFAD 463
Score = 58 (25.5 bits), Expect = 2.6e-27, Sum P(4) = 2.6e-27
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
M+E G EL IL T + RQT +FSAT+T
Sbjct: 456 MLEDGFADELNEIL-----TTIPKSRQTMLFSATMT 486
Score = 54 (24.1 bits), Expect = 3.8e-22, Sum P(3) = 3.8e-22
Identities = 27/104 (25%), Positives = 45/104 (43%)
Query: 1220 DLAK---SIEYLESKIKKNRPDN---WLHRSGRTARANNEGLTLVLI-ESDEIPLYIKMF 1272
DLA I+ +E+ I P + ++HR GRTARA G + E D + +
Sbjct: 601 DLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKAAVK 660
Query: 1273 NSLEKKVDLPDFPIDESVLS-LIKKRIDLAKSIEYL--ESKIKK 1313
+ + +D SV K D+ + I+ + E K++K
Sbjct: 661 AGKAQGAKIVSRVVDPSVADDWASKAKDMEEEIDAVLEEEKLEK 704
Score = 37 (18.1 bits), Expect = 1.0e-41, Sum P(4) = 1.0e-41
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 1216 KKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEG 1254
KKR+D AK + KK++ + R+G+ +G
Sbjct: 768 KKRLDAAKLRQEEGLGRKKSKAEREDPRAGKAKLGKGKG 806
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 226 (84.6 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 62/212 (29%), Positives = 112/212 (52%)
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK--DSYLYYFILQHPGRT 1080
DP I+R+ + + P++V + K +T + L H++K D +Q P
Sbjct: 187 DP-IRRIAERF-MNEPELVKVKAK-EMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELA 243
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
+VF + V L + L + + +H ++Q +RL L +F++ IL+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARG 303
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
LDI G+ HV ++ +P+ E Y+HR GRT RA G+ + + EI + + ++K+
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKM 363
Query: 1201 DLPDFP-IDESVLSLIKKRIDLAKSIEYLESK 1231
+ P +DE++ ++RI + K + +E++
Sbjct: 364 ERMKPPTLDEALEG--QQRIAIEKLLNVVETE 393
Score = 218 (81.8 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 50/132 (37%), Positives = 73/132 (55%)
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
E V + + AL++APTRELAIQV + G V+V + GG E+Q+R L K P
Sbjct: 62 EKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHP 121
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
H++V TPGR+ + I G L ++ + V+DE D M+ G +++ IL V
Sbjct: 122 HVIVGTPGRIIDHINRGTLRLEHVHTV---VLDEADEMLNMGFIEDIEAILSHVPAE--- 175
Query: 988 QPRQTFVFSATL 999
RQT +FSAT+
Sbjct: 176 --RQTLLFSATM 185
Score = 213 (80.0 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 50/142 (35%), Positives = 77/142 (54%)
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
E V + + AL++APTRELAIQV + G V+V + GG E+Q+R L K P
Sbjct: 62 EKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHP 121
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
H++V TPGR+ + I G L ++ + V+DE D M+ G +++ IL V
Sbjct: 122 HVIVGTPGRIIDHINRGTLRLEHVHTV---VLDEADEMLNMGFIEDIEAILSHVPAE--- 175
Query: 371 QPRQTMIESGHFPE-LKNILDR 391
RQT++ S P+ ++ I +R
Sbjct: 176 --RQTLLFSATMPDPIRRIAER 195
Score = 212 (79.7 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 55/181 (30%), Positives = 91/181 (50%)
Query: 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-- 532
E+ + L+ + P R + E + P++V + K +T + L H++K
Sbjct: 175 ERQTLLFSATMPDPIRRIAERFMN-----EPELVKVKAK-EMTVPNIQQYYLEVHEKKKF 228
Query: 533 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592
D +Q P +VF + V L + L + + +H ++Q +RL L +F++
Sbjct: 229 DILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKE 288
Query: 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
IL+ATDVAARGLDI G+ HV ++ +P+ E Y+HR GRT RA G+ + + E
Sbjct: 289 GAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
Query: 653 I 653
I
Sbjct: 349 I 349
Score = 149 (57.5 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 1344 IFESRNLRYSW-DALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
I E N++ S AL++APTRELAIQV + G V+V + GG E+Q+R L K
Sbjct: 60 IVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK 119
Query: 1403 CPHILVATPGAL 1414
PH++V TPG +
Sbjct: 120 HPHVIVGTPGRI 131
Score = 128 (50.1 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + + + + +++A+ + GF+ T IQ+ +P +L KD++G A+TG+GKT AFGIP
Sbjct: 1 MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSL-QNKDVIGQAQTGTGKTAAFGIP 59
Query: 210 IL 211
I+
Sbjct: 60 IV 61
Score = 128 (50.1 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + + + + +++A+ + GF+ T IQ+ +P +L KD++G A+TG+GKT AFGIP
Sbjct: 1 MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSL-QNKDVIGQAQTGTGKTAAFGIP 59
Query: 827 IL 828
I+
Sbjct: 60 IV 61
Score = 77 (32.2 bits), Expect = 5.1e-26, Sum P(3) = 5.1e-26
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESVLSLIK 1295
P++++HR GRT RA G+ + + EI + + ++K++ P +DE++ +
Sbjct: 321 PESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLDEALEG--Q 378
Query: 1296 KRIDLAKSIEYLESK 1310
+RI + K + +E++
Sbjct: 379 QRIAIEKLLNVVETE 393
Score = 43 (20.2 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
L K ++++ R+I+ + L+ L+ V T M+ G +++ IL V
Sbjct: 117 LKKHPHVIVGTPGRIIDHINRGTLR--LEHVH-TVVLDEADEMLNMGFIEDIEAILSHVP 173
Query: 394 MTETSQPRQTFVFSATL 410
RQT +FSAT+
Sbjct: 174 AE-----RQTLLFSATM 185
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 256 (95.2 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 63/197 (31%), Positives = 103/197 (52%)
Query: 1031 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISS 1089
D + + P I + K TL + I KD YL Y + +H G + +VF N+ +
Sbjct: 198 DSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKKHEGSSAIVFVNNCYA 257
Query: 1090 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 1149
V+ + +L L + LH+ ++Q+ RL L F+ +L+ATDVA+RGLDIP ++ V
Sbjct: 258 VEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIV 317
Query: 1150 IHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE 1209
I+Y + +S+ YIHR GRTAR G + I ++ L + ++K+++L DE
Sbjct: 318 INYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIEEIIKKQLELYKTDDDE 377
Query: 1210 SVLSLIKKRIDLAKSIE 1226
V +K+ K +E
Sbjct: 378 -VFRHLKEASTARKIVE 393
Score = 246 (91.7 bits), Expect = 1.7e-38, Sum P(3) = 1.7e-38
Identities = 55/159 (34%), Positives = 86/159 (54%)
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISS 556
D + + P I + K TL + I KD YL Y + +H G + +VF N+ +
Sbjct: 198 DSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKKHEGSSAIVFVNNCYA 257
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616
V+ + +L L + LH+ ++Q+ RL L F+ +L+ATDVA+RGLDIP ++ V
Sbjct: 258 VEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIV 317
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
I+Y + +S+ YIHR GRTAR G + I ++ L
Sbjct: 318 INYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSL 356
Score = 198 (74.8 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 51/126 (40%), Positives = 73/126 (57%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVAC--VVGGMSTEKQLRILNKCPHILVATP 934
++A+IL PTRELA+Q+ G P+ V C V+GG+ Q IL+K PHI+VATP
Sbjct: 73 VFAVILTPTRELAVQIGEQFNAIG--APMNVNCSVVIGGIDNVTQALILDKRPHIIVATP 130
Query: 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFV 994
GRL + G + K +LV+DE DR++ E+ +IL+ + E RQT +
Sbjct: 131 GRLASHLNNGLKIALKFCK--FLVLDEADRLLGEDFELEIASILEHLPPPEK---RQTLL 185
Query: 995 FSATLT 1000
FSAT+T
Sbjct: 186 FSATMT 191
Score = 181 (68.8 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 49/139 (35%), Positives = 75/139 (53%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVAC--VVGGMSTEKQLRILNKCPHILVATP 317
++A+IL PTRELA+Q+ G P+ V C V+GG+ Q IL+K PHI+VATP
Sbjct: 73 VFAVILTPTRELAVQIGEQFNAIG--APMNVNCSVVIGGIDNVTQALILDKRPHIIVATP 130
Query: 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
GRL + G + K +LV+DE DR++ E+ +IL+ + E RQT++
Sbjct: 131 GRLASHLNNGLKIALKFCK--FLVLDEADRLLGEDFELEIASILEHLPPPEK---RQTLL 185
Query: 378 ESGHFPELKNILDRVTMTE 396
S + LD + + +
Sbjct: 186 FSATMTKNLTKLDSIALNK 204
Score = 132 (51.5 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
Identities = 43/136 (31%), Positives = 66/136 (48%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVAC--VVGGMSTEKQLRILNKCPHILVA 1409
Y A+IL PTRELA+Q+ G P+ V C V+GG+ Q IL+K PHI+VA
Sbjct: 71 YGVFAVILTPTRELAVQIGEQFNAIG--APMNVNCSVVIGGIDNVTQALILDKRPHIIVA 128
Query: 1410 TPGAL-SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENA 1468
TPG L S L ++++ + + + D L + ++ E+L P R+
Sbjct: 129 TPGRLASHLNNGLKIALKFCKFLVL-DEADRLLGEDF-ELEIASILEHL--PPPEKRQTL 184
Query: 1469 LMSKALVSKRKELQSL 1484
L S + +L S+
Sbjct: 185 LFSATMTKNLTKLDSI 200
Score = 116 (45.9 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
Q GFK P+ IQ+ +P L R DI+ +A+TGSGKT +F IPIL
Sbjct: 21 QLGFKAPSNIQANTIPEILKGR-DIIASAKTGSGKTASFAIPIL 63
Score = 116 (45.9 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
Q GFK P+ IQ+ +P L R DI+ +A+TGSGKT +F IPIL
Sbjct: 21 QLGFKAPSNIQANTIPEILKGR-DIIASAKTGSGKTASFAIPIL 63
Score = 78 (32.5 bits), Expect = 2.3e-22, Sum P(3) = 2.3e-22
Identities = 29/108 (26%), Positives = 51/108 (47%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N +++HR GRTAR G + I ++ L + ++K+++L DE V +
Sbjct: 324 NSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIEEIIKKQLELYKTDDDE-VFRHL 382
Query: 1295 KKRIDLAKSIE-YLES-----KIKKNRPD-NWLEKAAKDMXXXXXXEN 1335
K+ K +E +L+ K K+ R + N L+K K++ EN
Sbjct: 383 KEASTARKIVEIHLDEIEFGVKQKERRTERNELQKQLKEVNNKEKFEN 430
Score = 57 (25.1 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 27/109 (24%), Positives = 48/109 (44%)
Query: 446 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLN-IKS 504
+K I+ + K G KT + + + +D Y + ++ P R L +I + N I +
Sbjct: 39 LKGRDII-ASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGA 97
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 553
P V+ + IG +T++ IL K + I+ PGR N+
Sbjct: 98 PMNVNCSVVIGGIDNVTQALILDKRP-------HIIVATPGRLASHLNN 139
Score = 47 (21.6 bits), Expect = 9.2e-26, Sum P(3) = 9.2e-26
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 384 ELKNILDRVTMTETSQPRQTFVFSATLT 411
E+ +IL+ + E RQT +FSAT+T
Sbjct: 167 EIASILEHLPPPEK---RQTLLFSATMT 191
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 234 (87.4 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 57/176 (32%), Positives = 92/176 (52%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFC 1084
IK L D L + SP ++++ + +T K L + I R LVF
Sbjct: 205 IKELTDKL-LHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFT 263
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
+ RL+Q L S +H + +Q R++ L +F+ +L+ATDVAARGLDI
Sbjct: 264 RTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDID 323
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
+ HVI++ +P ++ Y+HR GRT RA+N+G+ + L+ DE+ L + L+ K+
Sbjct: 324 KLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQSKM 379
Score = 231 (86.4 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 54/168 (32%), Positives = 90/168 (53%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-T 547
T +EI++L + + SP ++++ + +T K L + I R
Sbjct: 200 TFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFMIGSKNWRQV 259
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + RL+Q L S +H + +Q R++ L +F+ +L+ATDVAARG
Sbjct: 260 LVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARG 319
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDI + HVI++ +P ++ Y+HR GRT RA+N+G+ + L+ DE+ L
Sbjct: 320 LDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRL 367
Score = 221 (82.9 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 50/122 (40%), Positives = 74/122 (60%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
ALIL PTRELA+QV + GKY P+K V GG+S + Q+ L + ILVATPGRL
Sbjct: 89 ALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVATPGRLL 148
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ + G +L+ ++ + V+DE DRM++ G P+++ IL + + RQ +FSAT
Sbjct: 149 DLVNQGVLNLS---RVEFFVLDEADRMLDMGFLPDIRRILKLLP-----ESRQNLLFSAT 200
Query: 999 LT 1000
+
Sbjct: 201 FS 202
Score = 221 (82.9 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 51/132 (38%), Positives = 79/132 (59%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
ALIL PTRELA+QV + GKY P+K V GG+S + Q+ L + ILVATPGRL
Sbjct: 89 ALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVATPGRLL 148
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ + G +L+ ++ + V+DE DRM++ G P+++ IL + + RQ ++ S
Sbjct: 149 DLVNQGVLNLS---RVEFFVLDEADRMLDMGFLPDIRRILKLLP-----ESRQNLLFSAT 200
Query: 382 FP-ELKNILDRV 392
F E+K + D++
Sbjct: 201 FSKEIKELTDKL 212
Score = 148 (57.2 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 47/133 (35%), Positives = 68/133 (51%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALIL PTRELA+QV + GKY P+K V GG+S + Q+ L + ILVATPG L
Sbjct: 89 ALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVATPGRL- 147
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNW-LEKAAK--DMXXXXXXENLIQPKANSRENALMSK 1472
+DL + + +R + + L++A + DM +++ SR+N L S
Sbjct: 148 ---LDLVN-----QGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSA 199
Query: 1473 ALVSKRKELQSLL 1485
+ KEL L
Sbjct: 200 TFSKEIKELTDKL 212
Score = 106 (42.4 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++RA+ ++G+ PT +Q +P L AR D++ A+TG+GKT F +P+L
Sbjct: 21 LLRAIREQGYVEPTPVQRQAIPVILQAR-DVMVTAQTGTGKTAGFTLPLL 69
Score = 106 (42.4 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++RA+ ++G+ PT +Q +P L AR D++ A+TG+GKT F +P+L
Sbjct: 21 LLRAIREQGYVEPTPVQRQAIPVILQAR-DVMVTAQTGTGKTAGFTLPLL 69
Score = 85 (35.0 bits), Expect = 2.4e-25, Sum P(3) = 2.4e-25
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 1225 IEYLESKIKKNRPD---NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1279
I+ L I PD +++HR GRT RA+N+G+ + L+ DE+ L + L+ K+
Sbjct: 322 IDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQSKM 379
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 234 (87.4 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 57/176 (32%), Positives = 92/176 (52%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLVFC 1084
IK L D L + SP ++++ + +T K L + I R LVF
Sbjct: 205 IKELTDKL-LHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFT 263
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
+ RL+Q L S +H + +Q R++ L +F+ +L+ATDVAARGLDI
Sbjct: 264 RTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDID 323
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
+ HVI++ +P ++ Y+HR GRT RA+N+G+ + L+ DE+ L + L+ K+
Sbjct: 324 KLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQSKM 379
Score = 231 (86.4 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 54/168 (32%), Positives = 90/168 (53%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-T 547
T +EI++L + + SP ++++ + +T K L + I R
Sbjct: 200 TFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFMIGSKNWRQV 259
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + RL+Q L S +H + +Q R++ L +F+ +L+ATDVAARG
Sbjct: 260 LVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARG 319
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDI + HVI++ +P ++ Y+HR GRT RA+N+G+ + L+ DE+ L
Sbjct: 320 LDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRL 367
Score = 221 (82.9 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 50/122 (40%), Positives = 74/122 (60%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
ALIL PTRELA+QV + GKY P+K V GG+S + Q+ L + ILVATPGRL
Sbjct: 89 ALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVATPGRLL 148
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ + G +L+ ++ + V+DE DRM++ G P+++ IL + + RQ +FSAT
Sbjct: 149 DLVNQGVLNLS---RVEFFVLDEADRMLDMGFLPDIRRILKLLP-----ESRQNLLFSAT 200
Query: 999 LT 1000
+
Sbjct: 201 FS 202
Score = 221 (82.9 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 51/132 (38%), Positives = 79/132 (59%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
ALIL PTRELA+QV + GKY P+K V GG+S + Q+ L + ILVATPGRL
Sbjct: 89 ALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVATPGRLL 148
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ + G +L+ ++ + V+DE DRM++ G P+++ IL + + RQ ++ S
Sbjct: 149 DLVNQGVLNLS---RVEFFVLDEADRMLDMGFLPDIRRILKLLP-----ESRQNLLFSAT 200
Query: 382 FP-ELKNILDRV 392
F E+K + D++
Sbjct: 201 FSKEIKELTDKL 212
Score = 148 (57.2 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 47/133 (35%), Positives = 68/133 (51%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALIL PTRELA+QV + GKY P+K V GG+S + Q+ L + ILVATPG L
Sbjct: 89 ALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVATPGRL- 147
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNW-LEKAAK--DMXXXXXXENLIQPKANSRENALMSK 1472
+DL + + +R + + L++A + DM +++ SR+N L S
Sbjct: 148 ---LDLVN-----QGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSA 199
Query: 1473 ALVSKRKELQSLL 1485
+ KEL L
Sbjct: 200 TFSKEIKELTDKL 212
Score = 106 (42.4 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++RA+ ++G+ PT +Q +P L AR D++ A+TG+GKT F +P+L
Sbjct: 21 LLRAIREQGYVEPTPVQRQAIPVILQAR-DVMVTAQTGTGKTAGFTLPLL 69
Score = 106 (42.4 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++RA+ ++G+ PT +Q +P L AR D++ A+TG+GKT F +P+L
Sbjct: 21 LLRAIREQGYVEPTPVQRQAIPVILQAR-DVMVTAQTGTGKTAGFTLPLL 69
Score = 85 (35.0 bits), Expect = 2.4e-25, Sum P(3) = 2.4e-25
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 1225 IEYLESKIKKNRPD---NWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1279
I+ L I PD +++HR GRT RA+N+G+ + L+ DE+ L + L+ K+
Sbjct: 322 IDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQSKM 379
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 235 (87.8 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 58/191 (30%), Positives = 98/191 (51%)
Query: 1033 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVK 1091
L+++ P +++T KI + L + L D++ L+ F+ ++ + + VF N+ SV+
Sbjct: 346 LSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLKKNMSKKIMVFFNNCMSVQ 405
Query: 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151
LL + +H Q +RLK+ F +ILL T+VAARGLDIP + ++I
Sbjct: 406 FYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQ 465
Query: 1152 YHVPRTSEIYIHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLEKKVDLPDFPID 1208
Y P S+ YIHR GRT R ++ G ++ + E+ Y+K +N + + F D
Sbjct: 466 YDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFLNYLKFYN-----IPINQFAYD 520
Query: 1209 ESVLSLIKKRI 1219
+ L I+ I
Sbjct: 521 PNKLINIQSHI 531
Score = 224 (83.9 bits), Expect = 2.4e-37, Sum P(3) = 2.4e-37
Identities = 50/156 (32%), Positives = 84/156 (53%)
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVK 558
L+++ P +++T KI + L + L D++ L+ F+ ++ + + VF N+ SV+
Sbjct: 346 LSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLKKNMSKKIMVFFNNCMSVQ 405
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
LL + +H Q +RLK+ F +ILL T+VAARGLDIP + ++I
Sbjct: 406 FYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQ 465
Query: 619 YHVPRTSEIYIHRSGRTARA-NNEGLTVVLIESDEI 653
Y P S+ YIHR GRT R ++ G ++ + E+
Sbjct: 466 YDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHEL 501
Score = 173 (66.0 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 48/130 (36%), Positives = 72/130 (55%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+N LI++PTREL +Q+ D KY P ++GGMS ++ + +IL+AT
Sbjct: 218 KNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFIHGINILIAT 277
Query: 934 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
PGRL L H T+ +YK + L+IDE DR+++ G E+ I+ R+ + R
Sbjct: 278 PGRL-----LDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLP-----KKR 327
Query: 991 QTFVFSATLT 1000
QT +FSAT T
Sbjct: 328 QTALFSATQT 337
Score = 160 (61.4 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 43/124 (34%), Positives = 66/124 (53%)
Query: 94 NTNDPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTYTSANKELLEVDTSNN-EDMFVQMAE 152
N ND D++ NK E ++ SS TYT K +NN ++ F +
Sbjct: 91 NENDEDNKNNKNNE-NNENTSSEEICDHDKNDKTYTDEIKSNNSDHNNNNSKEHFYSELK 149
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + NI + + + L + F T T+IQ+ +P L+ KDI+GAA+TGSGKTLAF +P +
Sbjct: 150 FEELNICDALKKGLKELNFVTLTEIQAKCIPH-FLSGKDILGAAKTGSGKTLAFLVPSIN 208
Query: 213 GIVN 216
+ N
Sbjct: 209 ILYN 212
Score = 155 (59.6 bits), Expect = 6.2e-40, Sum P(3) = 6.2e-40
Identities = 42/124 (33%), Positives = 65/124 (52%)
Query: 711 NTNDPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNN-EDMFVQMAE 769
N ND D++ NK E ++ S TYT K +NN ++ F +
Sbjct: 91 NENDEDNKNNKNNE-NNENTSSEEICDHDKNDKTYTDEIKSNNSDHNNNNSKEHFYSELK 149
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + NI + + + L + F T T+IQ+ +P L+ KDI+GAA+TGSGKTLAF +P +
Sbjct: 150 FEELNICDALKKGLKELNFVTLTEIQAKCIPH-FLSGKDILGAAKTGSGKTLAFLVPSIN 208
Query: 830 GIVN 833
+ N
Sbjct: 209 ILYN 212
Score = 155 (59.6 bits), Expect = 1.4e-38, Sum P(3) = 1.4e-38
Identities = 40/111 (36%), Positives = 62/111 (55%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+N LI++PTREL +Q+ D KY P ++GGMS ++ + +IL+AT
Sbjct: 218 KNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFIHGINILIAT 277
Query: 317 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRV 364
PGRL L H T+ +YK + L+IDE DR+++ G E+ I+ R+
Sbjct: 278 PGRL-----LDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRL 323
Score = 112 (44.5 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 42/136 (30%), Positives = 66/136 (48%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LI++PTREL +Q+ D KY P ++GGMS ++ + +IL+ATPG L L
Sbjct: 224 LIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFIHGINILIATPGRL-L 282
Query: 1417 KRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXE-NLIQPKA-NSRENALMSKAL 1474
+ K Y KN +++A + + E NLI + R+ AL S
Sbjct: 283 DHMQNTKEFIY------KNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTALFSATQ 336
Query: 1475 VSKRKELQSLLGKSVQ 1490
+K ++SL+ S+Q
Sbjct: 337 TTK---VESLIRLSLQ 349
Score = 59 (25.8 bits), Expect = 8.7e-22, Sum P(3) = 8.7e-22
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 1232 IKKNRPDN---WLHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLEKKVDLPDFP 1285
I+ + PD+ ++HR GRT R ++ G ++ + E+ Y+K +N + + F
Sbjct: 464 IQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFLNYLKFYN-----IPINQFA 518
Query: 1286 IDESVLSLIKKRI 1298
D + L I+ I
Sbjct: 519 YDPNKLINIQSHI 531
Score = 49 (22.3 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 37/149 (24%), Positives = 58/149 (38%)
Query: 465 TESKILCKHDEKDSYLYYFILQ----HPGRTLCEEIQDLLNIKSPKIVDLTEKIGITK-- 518
T S+ +C HD+ D I H E L + I D +K G+ +
Sbjct: 109 TSSEEICDHDKNDKTYTDEIKSNNSDHNNNNSKEHFYSELKFEELNICDALKK-GLKELN 167
Query: 519 --TLTESKILC-KHDEKDSYLYYFILQHPGRTLVFC----NSISSVKRLTQLLT-MLKCS 570
TLTE + C H + G+TL F N + ++K L + T +L S
Sbjct: 168 FVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINILYNIKFLPKNGTGVLIIS 227
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILL 599
P + Q K+L ++ Q N I++
Sbjct: 228 PTR-ELCLQIYQVCKDLCKYIPQTNGIII 255
Score = 42 (19.8 bits), Expect = 7.3e-27, Sum P(3) = 7.3e-27
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
++ IN L+ R+++ H K + + + +++ G E+ I+ R+
Sbjct: 268 IHGINILIATP-GRLLD--HMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLP 324
Query: 394 MTETSQPRQTFVFSATLT 411
+ RQT +FSAT T
Sbjct: 325 -----KKRQTALFSATQT 337
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 235 (87.8 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 58/191 (30%), Positives = 98/191 (51%)
Query: 1033 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVK 1091
L+++ P +++T KI + L + L D++ L+ F+ ++ + + VF N+ SV+
Sbjct: 346 LSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLKKNMSKKIMVFFNNCMSVQ 405
Query: 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151
LL + +H Q +RLK+ F +ILL T+VAARGLDIP + ++I
Sbjct: 406 FYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQ 465
Query: 1152 YHVPRTSEIYIHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLEKKVDLPDFPID 1208
Y P S+ YIHR GRT R ++ G ++ + E+ Y+K +N + + F D
Sbjct: 466 YDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFLNYLKFYN-----IPINQFAYD 520
Query: 1209 ESVLSLIKKRI 1219
+ L I+ I
Sbjct: 521 PNKLINIQSHI 531
Score = 224 (83.9 bits), Expect = 2.4e-37, Sum P(3) = 2.4e-37
Identities = 50/156 (32%), Positives = 84/156 (53%)
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVK 558
L+++ P +++T KI + L + L D++ L+ F+ ++ + + VF N+ SV+
Sbjct: 346 LSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLKKNMSKKIMVFFNNCMSVQ 405
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
LL + +H Q +RLK+ F +ILL T+VAARGLDIP + ++I
Sbjct: 406 FYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQ 465
Query: 619 YHVPRTSEIYIHRSGRTARA-NNEGLTVVLIESDEI 653
Y P S+ YIHR GRT R ++ G ++ + E+
Sbjct: 466 YDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHEL 501
Score = 173 (66.0 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 48/130 (36%), Positives = 72/130 (55%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+N LI++PTREL +Q+ D KY P ++GGMS ++ + +IL+AT
Sbjct: 218 KNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFIHGINILIAT 277
Query: 934 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
PGRL L H T+ +YK + L+IDE DR+++ G E+ I+ R+ + R
Sbjct: 278 PGRL-----LDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLP-----KKR 327
Query: 991 QTFVFSATLT 1000
QT +FSAT T
Sbjct: 328 QTALFSATQT 337
Score = 160 (61.4 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 43/124 (34%), Positives = 66/124 (53%)
Query: 94 NTNDPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTYTSANKELLEVDTSNN-EDMFVQMAE 152
N ND D++ NK E ++ SS TYT K +NN ++ F +
Sbjct: 91 NENDEDNKNNKNNE-NNENTSSEEICDHDKNDKTYTDEIKSNNSDHNNNNSKEHFYSELK 149
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + NI + + + L + F T T+IQ+ +P L+ KDI+GAA+TGSGKTLAF +P +
Sbjct: 150 FEELNICDALKKGLKELNFVTLTEIQAKCIPH-FLSGKDILGAAKTGSGKTLAFLVPSIN 208
Query: 213 GIVN 216
+ N
Sbjct: 209 ILYN 212
Score = 155 (59.6 bits), Expect = 6.2e-40, Sum P(3) = 6.2e-40
Identities = 42/124 (33%), Positives = 65/124 (52%)
Query: 711 NTNDPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNN-EDMFVQMAE 769
N ND D++ NK E ++ S TYT K +NN ++ F +
Sbjct: 91 NENDEDNKNNKNNE-NNENTSSEEICDHDKNDKTYTDEIKSNNSDHNNNNSKEHFYSELK 149
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + NI + + + L + F T T+IQ+ +P L+ KDI+GAA+TGSGKTLAF +P +
Sbjct: 150 FEELNICDALKKGLKELNFVTLTEIQAKCIPH-FLSGKDILGAAKTGSGKTLAFLVPSIN 208
Query: 830 GIVN 833
+ N
Sbjct: 209 ILYN 212
Score = 155 (59.6 bits), Expect = 1.4e-38, Sum P(3) = 1.4e-38
Identities = 40/111 (36%), Positives = 62/111 (55%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+N LI++PTREL +Q+ D KY P ++GGMS ++ + +IL+AT
Sbjct: 218 KNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFIHGINILIAT 277
Query: 317 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRV 364
PGRL L H T+ +YK + L+IDE DR+++ G E+ I+ R+
Sbjct: 278 PGRL-----LDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRL 323
Score = 112 (44.5 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 42/136 (30%), Positives = 66/136 (48%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LI++PTREL +Q+ D KY P ++GGMS ++ + +IL+ATPG L L
Sbjct: 224 LIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFIHGINILIATPGRL-L 282
Query: 1417 KRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXE-NLIQPKA-NSRENALMSKAL 1474
+ K Y KN +++A + + E NLI + R+ AL S
Sbjct: 283 DHMQNTKEFIY------KNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTALFSATQ 336
Query: 1475 VSKRKELQSLLGKSVQ 1490
+K ++SL+ S+Q
Sbjct: 337 TTK---VESLIRLSLQ 349
Score = 59 (25.8 bits), Expect = 8.7e-22, Sum P(3) = 8.7e-22
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 1232 IKKNRPDN---WLHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLEKKVDLPDFP 1285
I+ + PD+ ++HR GRT R ++ G ++ + E+ Y+K +N + + F
Sbjct: 464 IQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFLNYLKFYN-----IPINQFA 518
Query: 1286 IDESVLSLIKKRI 1298
D + L I+ I
Sbjct: 519 YDPNKLINIQSHI 531
Score = 49 (22.3 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 37/149 (24%), Positives = 58/149 (38%)
Query: 465 TESKILCKHDEKDSYLYYFILQ----HPGRTLCEEIQDLLNIKSPKIVDLTEKIGITK-- 518
T S+ +C HD+ D I H E L + I D +K G+ +
Sbjct: 109 TSSEEICDHDKNDKTYTDEIKSNNSDHNNNNSKEHFYSELKFEELNICDALKK-GLKELN 167
Query: 519 --TLTESKILC-KHDEKDSYLYYFILQHPGRTLVFC----NSISSVKRLTQLLT-MLKCS 570
TLTE + C H + G+TL F N + ++K L + T +L S
Sbjct: 168 FVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINILYNIKFLPKNGTGVLIIS 227
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILL 599
P + Q K+L ++ Q N I++
Sbjct: 228 PTR-ELCLQIYQVCKDLCKYIPQTNGIII 255
Score = 42 (19.8 bits), Expect = 7.3e-27, Sum P(3) = 7.3e-27
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
++ IN L+ R+++ H K + + + +++ G E+ I+ R+
Sbjct: 268 IHGINILIATP-GRLLD--HMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLP 324
Query: 394 MTETSQPRQTFVFSATLT 411
+ RQT +FSAT T
Sbjct: 325 -----KKRQTALFSATQT 337
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 244 (91.0 bits), Expect = 2.3e-40, Sum P(3) = 2.3e-40
Identities = 67/192 (34%), Positives = 100/192 (52%)
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P + +VFC + V + + L + LH M+QR+R + + F+ +L+ATDV
Sbjct: 239 PIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDV 298
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
AARGLDIP + HVI++ +P+ E YIHR GRT RA EG + LI E L + ++
Sbjct: 299 AARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAI 358
Query: 1197 EKKVD---LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNE 1253
K++ LP+ P+D + KK +AK I L++ I K P +L + R
Sbjct: 359 NKRLKREILPE-PVDLEE-ARFKK---IAKKI--LDT-ITKGVPALYLEMAARLLEEEES 410
Query: 1254 ----GLTLVLIE 1261
G TL L+E
Sbjct: 411 EQLLGATLYLLE 422
Score = 227 (85.0 bits), Expect = 3.0e-37, Sum P(3) = 3.0e-37
Identities = 45/109 (41%), Positives = 64/109 (58%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
P + +VFC + V + + L + LH M+QR+R + + F+ +L+ATDV
Sbjct: 239 PIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDV 298
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
AARGLDIP + HVI++ +P+ E YIHR GRT RA EG + LI E
Sbjct: 299 AARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRE 347
Score = 201 (75.8 bits), Expect = 2.3e-40, Sum P(3) = 2.3e-40
Identities = 48/124 (38%), Positives = 74/124 (59%)
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
K LI+ PTRELA+QV + + GKY V+ V GG + E+Q+R L + ++V TPG
Sbjct: 69 KAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPG 128
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
R+ + I F E+ KI +++DE D M++ G +++ IL+ T+T +QT +F
Sbjct: 129 RILDHIGRKTFPAAEI-KI--VILDEADEMLDMGFIDDIEAILN--TLTNR---QQTLLF 180
Query: 996 SATL 999
SATL
Sbjct: 181 SATL 184
Score = 191 (72.3 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 47/134 (35%), Positives = 77/134 (57%)
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
K LI+ PTRELA+QV + + GKY V+ V GG + E+Q+R L + ++V TPG
Sbjct: 69 KAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPG 128
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
R+ + I F E+ KI +++DE D M++ G +++ IL+ T+T +QT++
Sbjct: 129 RILDHIGRKTFPAAEI-KI--VILDEADEMLDMGFIDDIEAILN--TLTNR---QQTLLF 180
Query: 379 SGHFPE-LKNILDR 391
S P +K I+ +
Sbjct: 181 SATLPAPIKTIIKK 194
Score = 139 (54.0 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LI+ PTRELA+QV + + GKY V+ V GG + E+Q+R L + ++V TPG + L
Sbjct: 73 LIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRI-L 131
Query: 1417 KRIDLAKSIEYLESKIK-KNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
I K+ E KI + D L DM E ++ N ++ L S L
Sbjct: 132 DHIG-RKTFPAAEIKIVILDEADEML-----DMGFIDDIEAILNTLTNRQQTLLFSATLP 185
Query: 1476 SKRKEL-QSLLG 1486
+ K + + LG
Sbjct: 186 APIKTIIKKFLG 197
Score = 109 (43.4 bits), Expect = 2.3e-40, Sum P(3) = 2.3e-40
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M E+ K + +++A+ GF+ PT IQ +P +L ++VG A TG+GKT A+ +P
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIP-LILEGHNLVGQAPTGTGKTAAYLLP 59
Query: 210 ILTGI 214
+L I
Sbjct: 60 VLQRI 64
Score = 109 (43.4 bits), Expect = 2.3e-40, Sum P(3) = 2.3e-40
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M E+ K + +++A+ GF+ PT IQ +P +L ++VG A TG+GKT A+ +P
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIP-LILEGHNLVGQAPTGTGKTAAYLLP 59
Query: 827 ILTGI 831
+L I
Sbjct: 60 VLQRI 64
Score = 102 (41.0 bits), Expect = 1.7e-25, Sum P(4) = 1.7e-25
Identities = 41/136 (30%), Positives = 68/136 (50%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1278
+D+ + I +N P++++HR GRT RA EG + LI E L + ++ K+
Sbjct: 303 LDIPDVSHVINFDIPQN-PESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAINKR 361
Query: 1279 VD---LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXEN 1335
+ LP+ P+D + KK +AK I L++ I K P +LE AA+ + E
Sbjct: 362 LKREILPE-PVDLEE-ARFKK---IAKKI--LDT-ITKGVPALYLEMAAR-LLEEEESEQ 412
Query: 1336 LIQPNQLLIFESRNLR 1351
L+ L + E R+L+
Sbjct: 413 LLGAT-LYLLEDRSLQ 427
Score = 46 (21.3 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
M++ G +++ IL+ T+T +QT +FSATL
Sbjct: 155 MLDMGFIDDIEAILN--TLTNR---QQTLLFSATL 184
Score = 45 (20.9 bits), Expect = 1.7e-25, Sum P(4) = 1.7e-25
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195
+ R +P I V +Y +P T +I EGL +L + E+P+ +F
Sbjct: 204 LVGREKTVPAIRQV-YYELPETEKI-------------EGLVSIL--NSELPIQAIVFCR 247
Query: 1196 LEKKVD 1201
+K+VD
Sbjct: 248 TKKRVD 253
Score = 42 (19.8 bits), Expect = 8.6e-19, Sum P(3) = 8.6e-19
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 1204 DFPIDESVLSLIKKRID-LAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIES 1262
+ PI V KKR+D + + + + K D +T ++ G T +L+ +
Sbjct: 237 ELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVAT 296
Query: 1263 D 1263
D
Sbjct: 297 D 297
Score = 41 (19.5 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 1253 EGLTLVLIESDEIPLYIKMFNSLEKKVD 1280
EGL +L + E+P+ +F +K+VD
Sbjct: 228 EGLVSIL--NSELPIQAIVFCRTKKRVD 253
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 244 (91.0 bits), Expect = 2.3e-40, Sum P(3) = 2.3e-40
Identities = 67/192 (34%), Positives = 100/192 (52%)
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P + +VFC + V + + L + LH M+QR+R + + F+ +L+ATDV
Sbjct: 239 PIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDV 298
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
AARGLDIP + HVI++ +P+ E YIHR GRT RA EG + LI E L + ++
Sbjct: 299 AARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAI 358
Query: 1197 EKKVD---LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNE 1253
K++ LP+ P+D + KK +AK I L++ I K P +L + R
Sbjct: 359 NKRLKREILPE-PVDLEE-ARFKK---IAKKI--LDT-ITKGVPALYLEMAARLLEEEES 410
Query: 1254 ----GLTLVLIE 1261
G TL L+E
Sbjct: 411 EQLLGATLYLLE 422
Score = 227 (85.0 bits), Expect = 3.0e-37, Sum P(3) = 3.0e-37
Identities = 45/109 (41%), Positives = 64/109 (58%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
P + +VFC + V + + L + LH M+QR+R + + F+ +L+ATDV
Sbjct: 239 PIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDV 298
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
AARGLDIP + HVI++ +P+ E YIHR GRT RA EG + LI E
Sbjct: 299 AARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRE 347
Score = 201 (75.8 bits), Expect = 2.3e-40, Sum P(3) = 2.3e-40
Identities = 48/124 (38%), Positives = 74/124 (59%)
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
K LI+ PTRELA+QV + + GKY V+ V GG + E+Q+R L + ++V TPG
Sbjct: 69 KAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPG 128
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
R+ + I F E+ KI +++DE D M++ G +++ IL+ T+T +QT +F
Sbjct: 129 RILDHIGRKTFPAAEI-KI--VILDEADEMLDMGFIDDIEAILN--TLTNR---QQTLLF 180
Query: 996 SATL 999
SATL
Sbjct: 181 SATL 184
Score = 191 (72.3 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 47/134 (35%), Positives = 77/134 (57%)
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
K LI+ PTRELA+QV + + GKY V+ V GG + E+Q+R L + ++V TPG
Sbjct: 69 KAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPG 128
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
R+ + I F E+ KI +++DE D M++ G +++ IL+ T+T +QT++
Sbjct: 129 RILDHIGRKTFPAAEI-KI--VILDEADEMLDMGFIDDIEAILN--TLTNR---QQTLLF 180
Query: 379 SGHFPE-LKNILDR 391
S P +K I+ +
Sbjct: 181 SATLPAPIKTIIKK 194
Score = 139 (54.0 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LI+ PTRELA+QV + + GKY V+ V GG + E+Q+R L + ++V TPG + L
Sbjct: 73 LIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRI-L 131
Query: 1417 KRIDLAKSIEYLESKIK-KNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
I K+ E KI + D L DM E ++ N ++ L S L
Sbjct: 132 DHIG-RKTFPAAEIKIVILDEADEML-----DMGFIDDIEAILNTLTNRQQTLLFSATLP 185
Query: 1476 SKRKEL-QSLLG 1486
+ K + + LG
Sbjct: 186 APIKTIIKKFLG 197
Score = 109 (43.4 bits), Expect = 2.3e-40, Sum P(3) = 2.3e-40
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M E+ K + +++A+ GF+ PT IQ +P +L ++VG A TG+GKT A+ +P
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIP-LILEGHNLVGQAPTGTGKTAAYLLP 59
Query: 210 ILTGI 214
+L I
Sbjct: 60 VLQRI 64
Score = 109 (43.4 bits), Expect = 2.3e-40, Sum P(3) = 2.3e-40
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M E+ K + +++A+ GF+ PT IQ +P +L ++VG A TG+GKT A+ +P
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIP-LILEGHNLVGQAPTGTGKTAAYLLP 59
Query: 827 ILTGI 831
+L I
Sbjct: 60 VLQRI 64
Score = 102 (41.0 bits), Expect = 1.7e-25, Sum P(4) = 1.7e-25
Identities = 41/136 (30%), Positives = 68/136 (50%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1278
+D+ + I +N P++++HR GRT RA EG + LI E L + ++ K+
Sbjct: 303 LDIPDVSHVINFDIPQN-PESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAINKR 361
Query: 1279 VD---LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXEN 1335
+ LP+ P+D + KK +AK I L++ I K P +LE AA+ + E
Sbjct: 362 LKREILPE-PVDLEE-ARFKK---IAKKI--LDT-ITKGVPALYLEMAAR-LLEEEESEQ 412
Query: 1336 LIQPNQLLIFESRNLR 1351
L+ L + E R+L+
Sbjct: 413 LLGAT-LYLLEDRSLQ 427
Score = 46 (21.3 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
M++ G +++ IL+ T+T +QT +FSATL
Sbjct: 155 MLDMGFIDDIEAILN--TLTNR---QQTLLFSATL 184
Score = 45 (20.9 bits), Expect = 1.7e-25, Sum P(4) = 1.7e-25
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195
+ R +P I V +Y +P T +I EGL +L + E+P+ +F
Sbjct: 204 LVGREKTVPAIRQV-YYELPETEKI-------------EGLVSIL--NSELPIQAIVFCR 247
Query: 1196 LEKKVD 1201
+K+VD
Sbjct: 248 TKKRVD 253
Score = 42 (19.8 bits), Expect = 8.6e-19, Sum P(3) = 8.6e-19
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 1204 DFPIDESVLSLIKKRID-LAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIES 1262
+ PI V KKR+D + + + + K D +T ++ G T +L+ +
Sbjct: 237 ELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVAT 296
Query: 1263 D 1263
D
Sbjct: 297 D 297
Score = 41 (19.5 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 1253 EGLTLVLIESDEIPLYIKMFNSLEKKVD 1280
EGL +L + E+P+ +F +K+VD
Sbjct: 228 EGLVSIL--NSELPIQAIVFCRTKKRVD 253
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 246 (91.7 bits), Expect = 4.8e-40, Sum P(3) = 4.8e-40
Identities = 59/204 (28%), Positives = 110/204 (53%)
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHPGRT 1080
+++ LQ L P + + + L + +L KD+YL + I +H +
Sbjct: 192 TLRELQGLAT-NQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWS 250
Query: 1081 LV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
++ F N+ + + L +L + LH+ M Q++R L +F+ IL+ATDVA+R
Sbjct: 251 IIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASR 310
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++ VI+++ P +IYIHR GRTARA +G + L+ +I L + ++KK
Sbjct: 311 GLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKK 370
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAK 1223
++ +F ++E+ + I ++++ +
Sbjct: 371 LE--EFSVEEAEVLQILTQVNVVR 392
Score = 228 (85.3 bits), Expect = 7.6e-36, Sum P(4) = 7.6e-36
Identities = 55/172 (31%), Positives = 92/172 (53%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHP 544
TL + +++L L P + + + L + +L KD+YL + I +H
Sbjct: 188 TLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHE 247
Query: 545 GRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++ F N+ + + L +L + LH+ M Q++R L +F+ IL+ATDV
Sbjct: 248 DWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDV 307
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
A+RGLDIP ++ VI+++ P +IYIHR GRTARA +G + L+ +I L
Sbjct: 308 ASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHL 359
Score = 196 (74.1 bits), Expect = 4.8e-40, Sum P(3) = 4.8e-40
Identities = 46/124 (37%), Positives = 72/124 (58%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
++ L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATPGR
Sbjct: 71 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGR 130
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + + KI +LV+DE DR++E G + L+ + ++ RQT +FS
Sbjct: 131 LADHLRSSNTF--SIKKIRFLVMDEADRLLEQG-CTDFTVDLEAILAAVPAR-RQTLLFS 186
Query: 997 ATLT 1000
ATLT
Sbjct: 187 ATLT 190
Score = 176 (67.0 bits), Expect = 7.6e-36, Sum P(4) = 7.6e-36
Identities = 46/141 (32%), Positives = 76/141 (53%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
++ L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATPGR
Sbjct: 71 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGR 130
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ + + KI +LV+DE DR++E G + L+ + ++ RQT++ S
Sbjct: 131 LADHLRSSNTF--SIKKIRFLVMDEADRLLEQG-CTDFTVDLEAILAAVPAR-RQTLLFS 186
Query: 380 GHFPELKNILDRVTMTETSQP 400
L + L + T+QP
Sbjct: 187 A---TLTDTLRELQGLATNQP 204
Score = 139 (54.0 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 42/134 (31%), Positives = 61/134 (45%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATP
Sbjct: 69 YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128
Query: 1412 GALSLK-RIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALM 1470
G L+ R SI+ + + + D LE+ D E ++ R+ L
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVM-DEADRLLEQGCTDFTVDL--EAILAAVPARRQTLLF 185
Query: 1471 SKALVSKRKELQSL 1484
S L +ELQ L
Sbjct: 186 SATLTDTLRELQGL 199
Score = 114 (45.2 bits), Expect = 4.8e-40, Sum P(3) = 4.8e-40
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 827 IL 828
IL
Sbjct: 60 IL 61
Score = 114 (45.2 bits), Expect = 7.6e-36, Sum P(4) = 7.6e-36
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 210 IL 211
IL
Sbjct: 60 IL 61
Score = 86 (35.3 bits), Expect = 6.8e-23, Sum P(3) = 6.8e-23
Identities = 18/66 (27%), Positives = 39/66 (59%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P ++HR GRTARA +G + L+ +I L + ++KK++ +F ++E+ + I
Sbjct: 329 PKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLE--EFSVEEAEVLQILT 386
Query: 1297 RIDLAK 1302
++++ +
Sbjct: 387 QVNVVR 392
Score = 44 (20.5 bits), Expect = 2.5e-22, Sum P(4) = 2.5e-22
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
RQT +FSATLT
Sbjct: 180 RQTLLFSATLT 190
Score = 41 (19.5 bits), Expect = 7.6e-36, Sum P(4) = 7.6e-36
Identities = 8/44 (18%), Positives = 23/44 (52%)
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEK 1065
+ IK+ + +++ +++ + ++ + + E K+ H DEK
Sbjct: 364 EEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEK 407
Score = 41 (19.5 bits), Expect = 4.8e-16, Sum P(3) = 4.8e-16
Identities = 8/44 (18%), Positives = 23/44 (52%)
Query: 434 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEK 476
+ IK+ + +++ +++ + ++ + + E K+ H DEK
Sbjct: 364 EEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEK 407
Score = 39 (18.8 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 951 LYKINYLVIDETDRMIESGHFPELKNILDR 980
L ++N +V E + +E+ HF E K I R
Sbjct: 385 LTQVN-VVRRECEIKLEAAHFDEKKEINKR 413
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 245 (91.3 bits), Expect = 6.2e-40, Sum P(3) = 6.2e-40
Identities = 59/204 (28%), Positives = 110/204 (53%)
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHPGRT 1080
+++ LQ L P + + + L + +L KD+YL + I +H +
Sbjct: 192 TLRELQSLAT-NQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWS 250
Query: 1081 LV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
++ F N+ + + L +L + LH+ M Q++R L +F+ IL+ATDVA+R
Sbjct: 251 IIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASR 310
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++ VI+++ P +IYIHR GRTARA +G + L+ +I L + ++KK
Sbjct: 311 GLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKK 370
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAK 1223
++ +F ++E+ + I ++++ +
Sbjct: 371 LE--EFSVEEAEVLQILTQVNVVR 392
Score = 226 (84.6 bits), Expect = 7.6e-36, Sum P(3) = 7.6e-36
Identities = 54/172 (31%), Positives = 94/172 (54%)
Query: 491 TLCEEIQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHP 544
TL + +++L ++ + P + + + L + +L KD+YL + I +H
Sbjct: 188 TLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHE 247
Query: 545 GRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++ F N+ + + L +L + LH+ M Q++R L +F+ IL+ATDV
Sbjct: 248 DWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDV 307
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
A+RGLDIP ++ VI+++ P +IYIHR GRTARA +G + L+ +I L
Sbjct: 308 ASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHL 359
Score = 196 (74.1 bits), Expect = 6.2e-40, Sum P(3) = 6.2e-40
Identities = 46/124 (37%), Positives = 72/124 (58%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
++ L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATPGR
Sbjct: 71 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGR 130
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + + KI +LV+DE DR++E G + L+ + ++ RQT +FS
Sbjct: 131 LADHLRSSNTF--SIKKIRFLVMDEADRLLEQG-CTDFTVDLEAILAAVPAR-RQTLLFS 186
Query: 997 ATLT 1000
ATLT
Sbjct: 187 ATLT 190
Score = 178 (67.7 bits), Expect = 4.7e-38, Sum P(3) = 4.7e-38
Identities = 46/141 (32%), Positives = 76/141 (53%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
++ L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATPGR
Sbjct: 71 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGR 130
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ + + KI +LV+DE DR++E G + L+ + ++ RQT++ S
Sbjct: 131 LADHLRSSNTF--SIKKIRFLVMDEADRLLEQG-CTDFTVDLEAILAAVPAR-RQTLLFS 186
Query: 380 GHFPELKNILDRVTMTETSQP 400
L + L + T+QP
Sbjct: 187 A---TLTDTLRELQSLATNQP 204
Score = 143 (55.4 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 43/134 (32%), Positives = 62/134 (46%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATP
Sbjct: 69 YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128
Query: 1412 GALSLK-RIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALM 1470
G L+ R SI+ + + + D LE+ D E ++ R+ L
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVM-DEADRLLEQGCTDFTVDL--EAILAAVPARRQTLLF 185
Query: 1471 SKALVSKRKELQSL 1484
S L +ELQSL
Sbjct: 186 SATLTDTLRELQSL 199
Score = 114 (45.2 bits), Expect = 6.2e-40, Sum P(3) = 6.2e-40
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 210 IL 211
IL
Sbjct: 60 IL 61
Score = 114 (45.2 bits), Expect = 6.2e-40, Sum P(3) = 6.2e-40
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 827 IL 828
IL
Sbjct: 60 IL 61
Score = 86 (35.3 bits), Expect = 6.8e-23, Sum P(3) = 6.8e-23
Identities = 18/66 (27%), Positives = 39/66 (59%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P ++HR GRTARA +G + L+ +I L + ++KK++ +F ++E+ + I
Sbjct: 329 PKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLE--EFSVEEAEVLQILT 386
Query: 1297 RIDLAK 1302
++++ +
Sbjct: 387 QVNVVR 392
Score = 44 (20.5 bits), Expect = 3.6e-24, Sum P(3) = 3.6e-24
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
RQT +FSATLT
Sbjct: 180 RQTLLFSATLT 190
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 226 (84.6 bits), Expect = 7.2e-40, Sum P(3) = 7.2e-40
Identities = 60/203 (29%), Positives = 105/203 (51%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK--DSYLYYFILQHPGRTLVF 1083
IKR+ + + +P+ V + K +T + + L H+ K D+ +Q P +VF
Sbjct: 190 IKRIAERF-MTNPEHVKVKAK-EMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIVF 247
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
+ V LT+ L + + +H + Q +R+ L +F+ +L+ATDVAARGLDI
Sbjct: 248 GRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDI 307
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
G+ HV ++ VP+ E Y+HR GRT RA G+ + I E + + + ++K+D
Sbjct: 308 SGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRM 367
Query: 1204 DFP-IDESVLSLIKKRIDLAKSI 1225
P +DE++ + +D ++I
Sbjct: 368 KAPTLDEAIEGQQQVTVDRIRTI 390
Score = 203 (76.5 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 45/126 (35%), Positives = 68/126 (53%)
Query: 529 HDEK--DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
H+ K D+ +Q P +VF + V LT+ L + + +H + Q +R+
Sbjct: 224 HERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVA 283
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
L +F+ +L+ATDVAARGLDI G+ HV ++ VP+ E Y+HR GRT RA G+ +
Sbjct: 284 LRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMT 343
Query: 647 LIESDE 652
I E
Sbjct: 344 FITPRE 349
Score = 202 (76.2 bits), Expect = 7.2e-40, Sum P(3) = 7.2e-40
Identities = 46/123 (37%), Positives = 68/123 (55%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
+ A+++APTRELAIQV + G+ +V + GG +Q+R L K PHI+V TPGR
Sbjct: 72 IQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGR 131
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + I L +N +V+DE D M+ G ++++IL V QT +FS
Sbjct: 132 LLDHINR---RTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEH-----QTLLFS 183
Query: 997 ATL 999
AT+
Sbjct: 184 ATM 186
Score = 197 (74.4 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 47/133 (35%), Positives = 71/133 (53%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
+ A+++APTRELAIQV + G+ +V + GG +Q+R L K PHI+V TPGR
Sbjct: 72 IQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGR 131
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + I L +N +V+DE D M+ G ++++IL V QT++ S
Sbjct: 132 LLDHINR---RTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEH-----QTLLFS 183
Query: 380 GHFPE-LKNILDR 391
P +K I +R
Sbjct: 184 ATMPAPIKRIAER 196
Score = 137 (53.3 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 1346 ESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 1405
ES N++ A+++APTRELAIQV + G+ +V + GG +Q+R L K PH
Sbjct: 68 ESPNIQ----AIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPH 123
Query: 1406 ILVATPGAL 1414
I+V TPG L
Sbjct: 124 IIVGTPGRL 132
Score = 129 (50.5 bits), Expect = 7.2e-40, Sum P(3) = 7.2e-40
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
F + + +A+ + GF+ T IQ+ +P L A KD++G A+TG+GKT AFGIP++ I
Sbjct: 8 FQLSSDLTKAIKRMGFEEATPIQAQTIPLGL-ANKDVIGQAQTGTGKTAAFGIPLVEKI 65
Score = 129 (50.5 bits), Expect = 7.2e-40, Sum P(3) = 7.2e-40
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
F + + +A+ + GF+ T IQ+ +P L A KD++G A+TG+GKT AFGIP++ I
Sbjct: 8 FQLSSDLTKAIKRMGFEEATPIQAQTIPLGL-ANKDVIGQAQTGTGKTAAFGIPLVEKI 65
Score = 80 (33.2 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESVLSLIK 1295
P++++HR GRT RA G+ + I E + + + ++K+D P +DE++ +
Sbjct: 322 PESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKAPTLDEAIEGQQQ 381
Query: 1296 KRIDLAKSI 1304
+D ++I
Sbjct: 382 VTVDRIRTI 390
Score = 47 (21.6 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 19/90 (21%), Positives = 37/90 (41%)
Query: 96 NDPDDQVNK--TEEIQSDEPSSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQMAEW 153
++ D+ +N E+I+S + T + K + E +N E + V+ E
Sbjct: 152 DEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEM 211
Query: 154 VKFNIPETIIRALYQKGFKTPTKIQSMVMP 183
NI + + +K F T T++ + P
Sbjct: 212 TVSNIQQFYLEVHERKKFDTLTRLLDIQSP 241
Score = 47 (21.6 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 19/90 (21%), Positives = 37/90 (41%)
Query: 713 NDPDDQVNK--TEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQMAEW 770
++ D+ +N E+I+S + T + K + E +N E + V+ E
Sbjct: 152 DEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEM 211
Query: 771 VKFNIPETIIRALYQKGFKTPTKIQSMVMP 800
NI + + +K F T T++ + P
Sbjct: 212 TVSNIQQFYLEVHERKKFDTLTRLLDIQSP 241
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 266 (98.7 bits), Expect = 7.7e-40, Sum P(3) = 7.7e-40
Identities = 71/219 (32%), Positives = 115/219 (52%)
Query: 1029 LQDLLNIKSPK--IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR----TLV 1082
LQ LL S K + E + TLT+ I D K+ YL + + Q + ++
Sbjct: 248 LQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMI 307
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F ++ + +RL+ +L L+ + +H+ +Q RL L +F+ ILLATDVA+RGLD
Sbjct: 308 FVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLD 367
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
IP ++ VI+Y +PR Y+HR GRTARA GL + +I ++ L K+ + KK++
Sbjct: 368 IPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEP 427
Query: 1203 PDFPIDESVLSLIK----KRIDLAKSIEY-LESKIKKNR 1236
+ + L + K KR+ + K ++ E K+K R
Sbjct: 428 YNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRR 466
Score = 249 (92.7 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 60/171 (35%), Positives = 93/171 (54%)
Query: 491 TLCEEIQDLLNIKSPK--IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-- 546
T+ +Q LL S K + E + TLT+ I D K+ YL + + Q +
Sbjct: 243 TMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGI 302
Query: 547 --TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
++F ++ + +RL+ +L L+ + +H+ +Q RL L +F+ ILLATDVA
Sbjct: 303 RSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVA 362
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+RGLDIP ++ VI+Y +PR Y+HR GRTARA GL V +I ++ L
Sbjct: 363 SRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKL 413
Score = 172 (65.6 bits), Expect = 7.7e-40, Sum P(3) = 7.7e-40
Identities = 41/124 (33%), Positives = 66/124 (53%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
++AL++ PTRELA Q+ G ++ + +VGGM Q L PHI++ TPGR
Sbjct: 127 VFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGR 186
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
+ ++ + +LV+DE DR+++ G EL+ I + + RQT +FS
Sbjct: 187 IKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKS-----RQTLLFS 241
Query: 997 ATLT 1000
AT+T
Sbjct: 242 ATMT 245
Score = 150 (57.9 bits), Expect = 9.3e-38, Sum P(4) = 9.3e-38
Identities = 33/101 (32%), Positives = 54/101 (53%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
++AL++ PTRELA Q+ G ++ + +VGGM Q L PHI++ TPGR
Sbjct: 127 VFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGR 186
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 360
+ ++ + +LV+DE DR+++ G EL+ I
Sbjct: 187 IKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTI 227
Score = 114 (45.2 bits), Expect = 7.7e-40, Sum P(3) = 7.7e-40
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ E + + G + PT +Q+ +P +LA +D++G A+TGSGKT AF +PIL
Sbjct: 65 LAEWAVETCKELGMRKPTPVQTHCVPK-ILAGRDVLGLAQTGSGKTAAFALPIL 117
Score = 114 (45.2 bits), Expect = 7.7e-40, Sum P(3) = 7.7e-40
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ E + + G + PT +Q+ +P +LA +D++G A+TGSGKT AF +PIL
Sbjct: 65 LAEWAVETCKELGMRKPTPVQTHCVPK-ILAGRDVLGLAQTGSGKTAAFALPIL 117
Score = 110 (43.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 38/137 (27%), Positives = 61/137 (44%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y AL++ PTRELA Q+ G ++ + +VGGM Q L PHI++ TP
Sbjct: 125 YGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTP 184
Query: 1412 GALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMS 1471
G + + ++ + + S+ K D ++ D+ + Q SR+ L S
Sbjct: 185 GRIKVL-LENNPDVPPVFSRTKFLVLDE-ADRVL-DVGFQDELRTIFQCLPKSRQTLLFS 241
Query: 1472 KALVSKRKELQSLLGKS 1488
+ S LQ+LL S
Sbjct: 242 ATMTSN---LQALLEHS 255
Score = 92 (37.4 bits), Expect = 8.6e-21, Sum P(3) = 8.6e-21
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK- 1295
P +++HR GRTARA GL + +I ++ L K+ + KK++ + + L + K
Sbjct: 383 PRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKV 442
Query: 1296 ---KRIDLAKSIEY-LESKIKKNR 1315
KR+ + K ++ E K+K R
Sbjct: 443 SKAKRVAMMKMLDNGFEDKVKDRR 466
Score = 45 (20.9 bits), Expect = 5.3e-19, Sum P(5) = 5.3e-19
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 440 LQDLLNIKSPK--IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 486
LQ LL S K + E + TLT+ I D K+ YL + + Q
Sbjct: 248 LQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQ 296
Score = 42 (19.8 bits), Expect = 9.3e-38, Sum P(4) = 9.3e-38
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
RQT +FSAT+T
Sbjct: 235 RQTLLFSATMT 245
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 238 (88.8 bits), Expect = 8.0e-40, Sum P(3) = 8.0e-40
Identities = 64/215 (29%), Positives = 116/215 (53%)
Query: 1035 IKSPKIV--DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISS 1089
+ P +V D+ EK+ + L+ +C+ DEK L + + +T+VFC ++
Sbjct: 220 LTDPMLVRLDVDEKV--SDKLSMVFCMCRPDEKLFALLHLCRRMDRENKQTVVFCATMKH 277
Query: 1090 VKRLTQLLTM--LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 1147
V+ + +L + CS + ++ ++ R N+ +F ++ N+IL+ TDVAARG+DIP ++
Sbjct: 278 VEYVVGILHRAGIDCSFV--YSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLD 335
Query: 1148 HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV----DLP 1203
VI+ H P +++++HR GR ARA G + LI +DE+P +F L K + D
Sbjct: 336 TVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLFMFLGKPINFASDKS 395
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD 1238
++ DE+++ + I ++ E+ S I N D
Sbjct: 396 EYKEDETLIGRVPDSI-VSLETEFFHS-IHDNNED 428
Score = 220 (82.5 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 53/163 (32%), Positives = 94/163 (57%)
Query: 502 IKSPKIV--DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISS 556
+ P +V D+ EK+ + L+ +C+ DEK L + + +T+VFC ++
Sbjct: 220 LTDPMLVRLDVDEKV--SDKLSMVFCMCRPDEKLFALLHLCRRMDRENKQTVVFCATMKH 277
Query: 557 VKRLTQLLTM--LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 614
V+ + +L + CS + ++ ++ R N+ +F ++ N+IL+ TDVAARG+DIP ++
Sbjct: 278 VEYVVGILHRAGIDCSFV--YSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLD 335
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKT 657
VI+ H P +++++HR GR ARA G + LI +DE+P T
Sbjct: 336 TVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLT 378
Score = 207 (77.9 bits), Expect = 8.0e-40, Sum P(3) = 8.0e-40
Identities = 49/121 (40%), Positives = 73/121 (60%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
AL+++PTRELA+Q + + G++T ++ AC+VGG E+Q +++ P IL+ATPGRL
Sbjct: 96 ALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRLL 155
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
I L+ Y + Y+V DE DR+ E G +L L R+ + RQT +FSAT
Sbjct: 156 HVIVEMDLRLS--Y-VQYVVFDEADRLFEMGFQDQLTETLKRIP-----ESRQTLLFSAT 207
Query: 999 L 999
L
Sbjct: 208 L 208
Score = 196 (74.1 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 46/124 (37%), Positives = 73/124 (58%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
AL+++PTRELA+Q + + G++T ++ AC+VGG E+Q +++ P IL+ATPGRL
Sbjct: 96 ALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRLL 155
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
I L+ Y + Y+V DE DR+ E G +L L R+ + RQT++ S
Sbjct: 156 HVIVEMDLRLS--Y-VQYVVFDEADRLFEMGFQDQLTETLKRIP-----ESRQTLLFSAT 207
Query: 382 FPEL 385
P++
Sbjct: 208 LPKM 211
Score = 141 (54.7 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 35/124 (28%), Positives = 66/124 (53%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+++PTRELA+Q + + G++T ++ AC+VGG E+Q +++ P IL+ATPG L
Sbjct: 96 ALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRLL 155
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
+++ + Y++ + + D E +D + + + + +A + K LV
Sbjct: 156 HVIVEMDLRLSYVQYVVF-DEADRLFEMGFQDQLTETL-KRIPESRQTLLFSATLPKMLV 213
Query: 1476 SKRK 1479
K
Sbjct: 214 DFAK 217
Score = 125 (49.1 bits), Expect = 8.0e-40, Sum P(3) = 8.0e-40
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
W + + ++ +A+ +KGF PT IQ +P ++ KD+V + TGSGKT AF IP+L
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIP-CIMDGKDVVAMSRTGSGKTAAFVIPML 83
Score = 125 (49.1 bits), Expect = 8.0e-40, Sum P(3) = 8.0e-40
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
W + + ++ +A+ +KGF PT IQ +P ++ KD+V + TGSGKT AF IP+L
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIP-CIMDGKDVVAMSRTGSGKTAAFVIPML 83
Score = 92 (37.4 bits), Expect = 8.5e-24, Sum P(4) = 8.5e-24
Identities = 31/127 (24%), Positives = 59/127 (46%)
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN---WLHRSGRTARANNEG 1254
+K+++ F ++ + ++ I L++ I + P ++HR GR ARA G
Sbjct: 304 RKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSG 363
Query: 1255 LTLVLIESDEIPLYIKMFNSLEKKV----DLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1310
+ LI +DE+P +F L K + D ++ DE+++ + I ++ E+ S
Sbjct: 364 TAISLIANDELPYLTDLFMFLGKPINFASDKSEYKEDETLIGRVPDSI-VSLETEFFHS- 421
Query: 1311 IKKNRPD 1317
I N D
Sbjct: 422 IHDNNED 428
Score = 44 (20.5 bits), Expect = 6.3e-23, Sum P(3) = 6.3e-23
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 393 TMTETSQPRQTFVFSATL 410
T+ + RQT +FSATL
Sbjct: 191 TLKRIPESRQTLLFSATL 208
Score = 38 (18.4 bits), Expect = 8.5e-24, Sum P(4) = 8.5e-24
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 990 RQTFVFSATLTH 1001
+QT VF AT+ H
Sbjct: 266 KQTVVFCATMKH 277
Score = 38 (18.4 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 401 RQTFVFSATLTH 412
+QT VF AT+ H
Sbjct: 266 KQTVVFCATMKH 277
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 239 (89.2 bits), Expect = 1.7e-39, Sum P(3) = 1.7e-39
Identities = 64/206 (31%), Positives = 107/206 (51%)
Query: 1029 LQDLLN-IKS-----PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHPG 1078
L D LN +KS P + ++ L + +L KD+YL + I +H
Sbjct: 189 LTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQTFQDEHED 248
Query: 1079 RTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
+++ F + + L +L + LH+ M QRQR L +F+ IL+ATDVA
Sbjct: 249 WSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKILIATDVA 308
Query: 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197
ARGLDIP ++ VI+++ P +IYIHR GRTARA G+++ ++ +I L + E
Sbjct: 309 ARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHL-VHAIEE-E 366
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAK 1223
K+ L +F ++E ++ I +++ +
Sbjct: 367 IKLKLQEFSVEEKLVLDILTHVNVTR 392
Score = 231 (86.4 bits), Expect = 9.7e-37, Sum P(3) = 9.7e-37
Identities = 56/172 (32%), Positives = 91/172 (52%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHP 544
TL + + +L L + P + ++ L + +L KD+YL + I +H
Sbjct: 188 TLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQTFQDEHE 247
Query: 545 GRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++ F + + L +L + LH+ M QRQR L +F+ IL+ATDV
Sbjct: 248 DWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKILIATDV 307
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
AARGLDIP ++ VI+++ P +IYIHR GRTARA G+++ ++ +I L
Sbjct: 308 AARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHL 359
Score = 197 (74.4 bits), Expect = 1.7e-39, Sum P(3) = 1.7e-39
Identities = 50/127 (39%), Positives = 74/127 (58%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
++ L+L PTRELA Q+ GK +K VVGG+ Q L++ PH+++ATPGR
Sbjct: 71 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIATPGR 130
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFP-ELKNILDRVTMTETSQPRQTF 993
L + ++ + L K+ +LV+DE DR++E G F +L+ IL+ V RQT
Sbjct: 131 LADHLRSSNTF--SLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPAR-----RQTL 183
Query: 994 VFSATLT 1000
+FSATLT
Sbjct: 184 LFSATLT 190
Score = 180 (68.4 bits), Expect = 9.7e-38, Sum P(3) = 9.7e-38
Identities = 48/138 (34%), Positives = 75/138 (54%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
++ L+L PTRELA Q+ GK +K VVGG+ Q L++ PH+++ATPGR
Sbjct: 71 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIATPGR 130
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFP-ELKNILDRVTMTETSQPRQTM 376
L + ++ + L K+ +LV+DE DR++E G F +L+ IL+ V RQT+
Sbjct: 131 LADHLRSSNTF--SLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPAR-----RQTL 183
Query: 377 IESGHFPELKNILDRVTM 394
+ S + N L + M
Sbjct: 184 LFSATLTDTLNELKSLAM 201
Score = 138 (53.6 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 42/134 (31%), Positives = 63/134 (47%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y L+L PTRELA Q+ GK +K VVGG+ Q L++ PH+++ATP
Sbjct: 69 YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIATP 128
Query: 1412 GALSLK-RIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALM 1470
G L+ R S++ L+ + + D LE+ D E +++ R+ L
Sbjct: 129 GRLADHLRSSNTFSLKKLKFLVL-DEADRLLEQGCADFTADL--EVILEAVPARRQTLLF 185
Query: 1471 SKALVSKRKELQSL 1484
S L EL+SL
Sbjct: 186 SATLTDTLNELKSL 199
Score = 107 (42.7 bits), Expect = 1.7e-39, Sum P(3) = 1.7e-39
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
MA + + + ++ Q G PT +Q+ +P L R D +G A+TGSGKT AF +P
Sbjct: 1 MAAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGR-DCLGCAKTGSGKTAAFVLP 59
Query: 210 IL 211
+L
Sbjct: 60 VL 61
Score = 107 (42.7 bits), Expect = 1.7e-39, Sum P(3) = 1.7e-39
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
MA + + + ++ Q G PT +Q+ +P L R D +G A+TGSGKT AF +P
Sbjct: 1 MAAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGR-DCLGCAKTGSGKTAAFVLP 59
Query: 827 IL 828
+L
Sbjct: 60 VL 61
Score = 81 (33.6 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P ++HR GRTARA G+++ ++ +I L + E K+ L +F ++E ++ I
Sbjct: 329 PKIYIHRVGRTARAGRNGISITMVTQYDIHL-VHAIEE-EIKLKLQEFSVEEKLVLDILT 386
Query: 1297 RIDLAK 1302
+++ +
Sbjct: 387 HVNVTR 392
Score = 44 (20.5 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
RQT +FSATLT
Sbjct: 180 RQTLLFSATLT 190
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 231 (86.4 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 56/192 (29%), Positives = 99/192 (51%)
Query: 1024 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY------LYYFILQHP 1077
P I+R+ + + +P +++ + ++T+ + +L K +D + ++
Sbjct: 190 PEIERITNTF-LSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRALIDAE 248
Query: 1078 GR----TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
G ++FCN + V + + L P+H ++Q QR + LD FR+ +L+A
Sbjct: 249 GEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLRLLVA 308
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
+DVAARGLD+P + HV ++ VP E Y+HR GRT RA +G + L IP K
Sbjct: 309 SDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLC----IPRDEKAL 364
Query: 1194 NSLEKKV--DLP 1203
+++EK + D+P
Sbjct: 365 DAIEKLIQKDIP 376
Score = 228 (85.3 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY------LYYFILQ 542
T+ EI+ + N + +P +++ + ++T+ + +L K +D + ++
Sbjct: 187 TMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRALID 246
Query: 543 HPGR----TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598
G ++FCN + V + + L P+H ++Q QR + LD FR+ +L
Sbjct: 247 AEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLRLL 306
Query: 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL-IESDE 652
+A+DVAARGLD+P + HV ++ VP E Y+HR GRT RA +G + L I DE
Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDE 361
Score = 187 (70.9 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 43/121 (35%), Positives = 70/121 (57%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
+L+L PTRELA QV + K+ + A ++GG+S ++Q ++++ +L+ATPGRL
Sbjct: 76 SLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIATPGRLL 135
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ + G LT + +V+DE DRM++ G P+++ I T RQT FSAT
Sbjct: 136 DHFERGKLLLTG---VQIMVVDEADRMLDMGFIPDIERIFSLTPFT-----RQTLFFSAT 187
Query: 999 L 999
+
Sbjct: 188 M 188
Score = 182 (69.1 bits), Expect = 6.5e-39, Sum P(3) = 6.5e-39
Identities = 47/140 (33%), Positives = 77/140 (55%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
+L+L PTRELA QV + K+ + A ++GG+S ++Q ++++ +L+ATPGRL
Sbjct: 76 SLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIATPGRLL 135
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ + G LT + +V+DE DRM++ G P+++ I T RQT+ S
Sbjct: 136 DHFERGKLLLTG---VQIMVVDEADRMLDMGFIPDIERIFSLTPFT-----RQTLFFSAT 187
Query: 382 F-PELKNILDRVTMTETSQP 400
PE+ +R+T T S P
Sbjct: 188 MAPEI----ERITNTFLSAP 203
Score = 133 (51.9 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 24/63 (38%), Positives = 45/63 (71%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M ++ + N+ +++A+ + G++TPT IQ+ +P AL R D++G A+TG+GKT +F +P
Sbjct: 1 MTKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGR-DVLGIAQTGTGKTASFTLP 59
Query: 210 ILT 212
++T
Sbjct: 60 MIT 62
Score = 133 (51.9 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 24/63 (38%), Positives = 45/63 (71%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M ++ + N+ +++A+ + G++TPT IQ+ +P AL R D++G A+TG+GKT +F +P
Sbjct: 1 MTKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGR-DVLGIAQTGTGKTASFTLP 59
Query: 827 ILT 829
++T
Sbjct: 60 MIT 62
Score = 104 (41.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
+L+L PTRELA QV + K+ + A ++GG+S ++Q ++++ +L+ATPG L
Sbjct: 76 SLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIATPGRL 134
Score = 71 (30.1 bits), Expect = 2.3e-22, Sum P(3) = 2.3e-22
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV--DLP 1282
P++++HR GRT RA +G + L IP K +++EK + D+P
Sbjct: 333 PEDYVHRIGRTGRAGRDGKAITLC----IPRDEKALDAIEKLIQKDIP 376
Score = 59 (25.8 bits), Expect = 3.7e-26, Sum P(3) = 3.7e-26
Identities = 33/140 (23%), Positives = 54/140 (38%)
Query: 285 YTPVKVACVVGGMSTEKQLRILNKCP-HILVATPGRLWEFIQLGHFHLTELYKINYLVID 343
+T + + G + + R L CP L A ++ H LT+ I +
Sbjct: 56 FTLPMITLLARGRARARMPRSLVLCPTRELAAQVAENFD-TYTKHLKLTKALLIGGVSFK 114
Query: 344 ETDRMIESG-------------HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
E D +I+ G HF K +L V + + + M++ G P+++ I
Sbjct: 115 EQDALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR-MLDMGFIPDIERIFS 173
Query: 391 RVTMTETSQPRQTFVFSATL 410
T RQT FSAT+
Sbjct: 174 LTPFT-----RQTLFFSATM 188
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 259 (96.2 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 66/220 (30%), Positives = 115/220 (52%)
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL--QHPGRT-LVFCNSISSVKRLTQLL 1097
V+ + + I TL IL K++YLY + ++ +T ++F N + + L + L
Sbjct: 215 VESVDNVAIPSTLKIEYILVPEHVKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTL 274
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
L+ LH+ M Q++R +L RFR IL+ATDVA+RGLDIP +E V++Y +P
Sbjct: 275 KQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSD 334
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217
+++IHRSGRTARA G + + ++ + + + KK+ + D +V+
Sbjct: 335 PDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALT 394
Query: 1218 RIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTL 1257
++ AK ES + + +N+ R + + N+G +L
Sbjct: 395 KVTKAKR----ESLMAMQK-ENFGERKRQQKKKQNDGKSL 429
Score = 245 (91.3 bits), Expect = 6.0e-36, Sum P(5) = 6.0e-36
Identities = 53/149 (35%), Positives = 85/149 (57%)
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL--QHPGRT-LVFCNSISSVKRLTQLL 564
V+ + + I TL IL K++YLY + ++ +T ++F N + + L + L
Sbjct: 215 VESVDNVAIPSTLKIEYILVPEHVKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTL 274
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L+ LH+ M Q++R +L RFR IL+ATDVA+RGLDIP +E V++Y +P
Sbjct: 275 KQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSD 334
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
+++IHRSGRTARA G + + ++
Sbjct: 335 PDVFIHRSGRTARAGRIGDAISFVTQRDV 363
Score = 178 (67.7 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 42/125 (33%), Positives = 67/125 (53%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
++ ++L PTRELA+Q+ G ++V+ +VGG S +Q L + PH ++ATPGR
Sbjct: 71 MFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIATPGR 130
Query: 937 LWEFIQL-GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L I G + L + YLV+DE D ++ S L + + + RQT +F
Sbjct: 131 LAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDK---RQTLLF 187
Query: 996 SATLT 1000
+AT+T
Sbjct: 188 TATIT 192
Score = 158 (60.7 bits), Expect = 6.0e-36, Sum P(5) = 6.0e-36
Identities = 38/119 (31%), Positives = 62/119 (52%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
++ ++L PTRELA+Q+ G ++V+ +VGG S +Q L + PH ++ATPGR
Sbjct: 71 MFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIATPGR 130
Query: 320 LWEFIQL-GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
L I G + L + YLV+DE D ++ S L + + + RQT++
Sbjct: 131 LAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDK---RQTLL 186
Score = 119 (46.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
++L PTRELA+Q+ G ++V+ +VGG S +Q L + PH ++ATPG L+
Sbjct: 74 VVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIATPGRLA 132
Score = 105 (42.0 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
MA++ + + + +L PT IQ +P L R D +G A+TGSGKT+AF P
Sbjct: 1 MADFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGR-DCIGGAKTGSGKTIAFAGP 59
Query: 210 ILT 212
+LT
Sbjct: 60 MLT 62
Score = 105 (42.0 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
MA++ + + + +L PT IQ +P L R D +G A+TGSGKT+AF P
Sbjct: 1 MADFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGR-DCIGGAKTGSGKTIAFAGP 59
Query: 827 ILT 829
+LT
Sbjct: 60 MLT 62
Score = 74 (31.1 bits), Expect = 4.9e-19, Sum P(3) = 4.9e-19
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
PD ++HRSGRTARA G + + ++ + + + KK+ + D +V+
Sbjct: 335 PDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALT 394
Query: 1297 RIDLAKSIEYLESKIKKN 1314
++ AK E L + K+N
Sbjct: 395 KVTKAKR-ESLMAMQKEN 411
Score = 45 (20.9 bits), Expect = 5.8e-14, Sum P(5) = 5.8e-14
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484
V+ + + I TL IL K++YLY +
Sbjct: 215 VESVDNVAIPSTLKIEYILVPEHVKEAYLYQLL 247
Score = 39 (18.8 bits), Expect = 6.0e-36, Sum P(5) = 6.0e-36
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
RQT +F+AT+T
Sbjct: 182 RQTLLFTATIT 192
Score = 39 (18.8 bits), Expect = 6.0e-36, Sum P(5) = 6.0e-36
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 974 LKNILDRVT--MTETSQPRQTFVFSATLT 1000
++ I DR+ MTET++ T V LT
Sbjct: 366 IQAIEDRINKKMTETNKVHDTAVIRKALT 394
Score = 39 (18.8 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 385 LKNILDRVT--MTETSQPRQTFVFSATLT 411
++ I DR+ MTET++ T V LT
Sbjct: 366 IQAIEDRINKKMTETNKVHDTAVIRKALT 394
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 220 (82.5 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 52/121 (42%), Positives = 74/121 (61%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
AL+L PTRELA+QVQ + K T ++V GG+S E Q + N +L+ATPGRL
Sbjct: 78 ALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLL 137
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ ++ G +L +L N LV DE DRM++ G E++ +L +V +Q RQT +FSAT
Sbjct: 138 DHLRQGALNLNQL---NTLVFDEADRMLDMGFMDEIQAVLKQVP----AQ-RQTLLFSAT 189
Query: 999 L 999
L
Sbjct: 190 L 190
Score = 215 (80.7 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 50/142 (35%), Positives = 76/142 (53%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
AL+L PTRELA+QVQ + K T ++V GG+S E Q + N +L+ATPGRL
Sbjct: 78 ALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLL 137
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ ++ G +L +L N LV DE DRM++ G E++ +L +V + ++
Sbjct: 138 DHLRQGALNLNQL---NTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDDSI 194
Query: 382 FPELKNILDRVTMTETSQPRQT 403
F KN+L E ++P T
Sbjct: 195 FSFSKNLLRDPKRIEVAKPNTT 216
Score = 214 (80.4 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 52/174 (29%), Positives = 92/174 (52%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFIL-QHPGRTLVFCNSISSVKR 1092
++ PK +++ K T E ++ D K ++ + + ++ + L+F + V +
Sbjct: 202 LRDPKRIEVA-KPNTTAAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDK 260
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152
LT L L + H ++Q R K L F+ +L+ATDVAARGLDI +++VI++
Sbjct: 261 LTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINF 320
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206
+P +E YIHR GRT RA + GL + L ++ L ++ L+K++ +P
Sbjct: 321 ELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLLDKRLPQQWYP 374
Score = 206 (77.6 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 48/153 (31%), Positives = 82/153 (53%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFIL-QHPGRTLVFCNSISSVKR 559
++ PK +++ K T E ++ D K ++ + + ++ + L+F + V +
Sbjct: 202 LRDPKRIEVA-KPNTTAAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDK 260
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
LT L L + H ++Q R K L F+ +L+ATDVAARGLDI +++VI++
Sbjct: 261 LTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINF 320
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+P +E YIHR GRT RA + GL + L ++
Sbjct: 321 ELPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 353
Score = 129 (50.5 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA+QVQ + K T ++V GG+S E Q + N +L+ATPG L
Sbjct: 78 ALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRL 136
Score = 112 (44.5 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ L + G++ PT IQ +P A+L ++D++ A+TG+GKT AF +PIL
Sbjct: 12 LVDTLAELGYQQPTPIQVEAIP-AILTKQDVMAGAQTGTGKTAAFALPIL 60
Score = 112 (44.5 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ L + G++ PT IQ +P A+L ++D++ A+TG+GKT AF +PIL
Sbjct: 12 LVDTLAELGYQQPTPIQVEAIP-AILTKQDVMAGAQTGTGKTAAFALPIL 60
Score = 72 (30.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1285
++++HR GRT RA + GL + L ++ L ++ L+K++ +P
Sbjct: 327 EDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLLDKRLPQQWYP 374
Score = 49 (22.3 bits), Expect = 2.0e-20, Sum P(4) = 2.0e-20
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
M++ G E++ +L +V +Q RQT +FSATL
Sbjct: 161 MLDMGFMDEIQAVLKQVP----AQ-RQTLLFSATL 190
Score = 37 (18.1 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 1413 ALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSR---ENAL 1469
A++L + A +E +E+ + K P W D + L +P+ NS+ +
Sbjct: 345 AITLFSQEDALLLEEVETLLDKRLPQQWYPGFEPDFN-----KMLPEPRRNSKAAQKQRA 399
Query: 1470 MSKALVSKRK 1479
+AL K++
Sbjct: 400 KKRALGGKKR 409
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 220 (82.5 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 52/121 (42%), Positives = 74/121 (61%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
AL+L PTRELA+QVQ + K T ++V GG+S E Q + N +L+ATPGRL
Sbjct: 78 ALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLL 137
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ ++ G +L +L N LV DE DRM++ G E++ +L +V +Q RQT +FSAT
Sbjct: 138 DHLRQGALNLNQL---NTLVFDEADRMLDMGFMDEIQAVLKQVP----AQ-RQTLLFSAT 189
Query: 999 L 999
L
Sbjct: 190 L 190
Score = 215 (80.7 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 50/142 (35%), Positives = 76/142 (53%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
AL+L PTRELA+QVQ + K T ++V GG+S E Q + N +L+ATPGRL
Sbjct: 78 ALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLL 137
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ ++ G +L +L N LV DE DRM++ G E++ +L +V + ++
Sbjct: 138 DHLRQGALNLNQL---NTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDDSI 194
Query: 382 FPELKNILDRVTMTETSQPRQT 403
F KN+L E ++P T
Sbjct: 195 FSFSKNLLRDPKRIEVAKPNTT 216
Score = 214 (80.4 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 52/174 (29%), Positives = 92/174 (52%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFIL-QHPGRTLVFCNSISSVKR 1092
++ PK +++ K T E ++ D K ++ + + ++ + L+F + V +
Sbjct: 202 LRDPKRIEVA-KPNTTAAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDK 260
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152
LT L L + H ++Q R K L F+ +L+ATDVAARGLDI +++VI++
Sbjct: 261 LTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINF 320
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206
+P +E YIHR GRT RA + GL + L ++ L ++ L+K++ +P
Sbjct: 321 ELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLLDKRLPQQWYP 374
Score = 206 (77.6 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 48/153 (31%), Positives = 82/153 (53%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFIL-QHPGRTLVFCNSISSVKR 559
++ PK +++ K T E ++ D K ++ + + ++ + L+F + V +
Sbjct: 202 LRDPKRIEVA-KPNTTAAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDK 260
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
LT L L + H ++Q R K L F+ +L+ATDVAARGLDI +++VI++
Sbjct: 261 LTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINF 320
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+P +E YIHR GRT RA + GL + L ++
Sbjct: 321 ELPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 353
Score = 129 (50.5 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA+QVQ + K T ++V GG+S E Q + N +L+ATPG L
Sbjct: 78 ALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRL 136
Score = 112 (44.5 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ L + G++ PT IQ +P A+L ++D++ A+TG+GKT AF +PIL
Sbjct: 12 LVDTLAELGYQQPTPIQVEAIP-AILTKQDVMAGAQTGTGKTAAFALPIL 60
Score = 112 (44.5 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ L + G++ PT IQ +P A+L ++D++ A+TG+GKT AF +PIL
Sbjct: 12 LVDTLAELGYQQPTPIQVEAIP-AILTKQDVMAGAQTGTGKTAAFALPIL 60
Score = 72 (30.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1285
++++HR GRT RA + GL + L ++ L ++ L+K++ +P
Sbjct: 327 EDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLLDKRLPQQWYP 374
Score = 49 (22.3 bits), Expect = 2.0e-20, Sum P(4) = 2.0e-20
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
M++ G E++ +L +V +Q RQT +FSATL
Sbjct: 161 MLDMGFMDEIQAVLKQVP----AQ-RQTLLFSATL 190
Score = 37 (18.1 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 1413 ALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSR---ENAL 1469
A++L + A +E +E+ + K P W D + L +P+ NS+ +
Sbjct: 345 AITLFSQEDALLLEEVETLLDKRLPQQWYPGFEPDFN-----KMLPEPRRNSKAAQKQRA 399
Query: 1470 MSKALVSKRK 1479
+AL K++
Sbjct: 400 KKRALGGKKR 409
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 236 (88.1 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 58/206 (28%), Positives = 108/206 (52%)
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT---- 1080
++K LQ L P + + + L + +L KD+YL + + +
Sbjct: 192 TLKELQGLAT-NQPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLEDCS 250
Query: 1081 -LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
++F N+ + + L +L + LH+ M Q++R L RF+ IL+ATDVA+R
Sbjct: 251 IIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYRILIATDVASR 310
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++ VI+++ P +IYIHR GRTARA +G + L+ +I L +++E++
Sbjct: 311 GLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHL----LHAIEEE 366
Query: 1200 V--DLPDFPIDESVLSLIKKRIDLAK 1223
+ L + ++E+ + I ++++ +
Sbjct: 367 IKQQLAELAVEEAQVLQILTQVNVVR 392
Score = 228 (85.3 bits), Expect = 2.2e-36, Sum P(4) = 2.2e-36
Identities = 54/172 (31%), Positives = 90/172 (52%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
TL + +++L L P + + + L + +L KD+YL + + +
Sbjct: 188 TLTDTLKELQGLATNQPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLE 247
Query: 548 ----LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
++F N+ + + L +L + LH+ M Q++R L RF+ IL+ATDV
Sbjct: 248 DCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYRILIATDV 307
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
A+RGLDIP ++ VI+++ P +IYIHR GRTARA +G + L+ +I L
Sbjct: 308 ASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHL 359
Score = 200 (75.5 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 50/127 (39%), Positives = 73/127 (57%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
++ L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATPGR
Sbjct: 71 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPHVVIATPGR 130
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFP-ELKNILDRVTMTETSQPRQTF 993
L + ++ + + KI +LV+DE DR++E G F +L+ IL V RQT
Sbjct: 131 LADHLRSSNTF--NMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPAR-----RQTL 183
Query: 994 VFSATLT 1000
+FSATLT
Sbjct: 184 LFSATLT 190
Score = 181 (68.8 bits), Expect = 2.2e-36, Sum P(4) = 2.2e-36
Identities = 50/144 (34%), Positives = 77/144 (53%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
++ L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATPGR
Sbjct: 71 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPHVVIATPGR 130
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFP-ELKNILDRVTMTETSQPRQTM 376
L + ++ + + KI +LV+DE DR++E G F +L+ IL V RQT+
Sbjct: 131 LADHLRSSNTF--NMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPAR-----RQTL 183
Query: 377 IESGHFPELKNILDRVTMTETSQP 400
+ S L + L + T+QP
Sbjct: 184 LFSA---TLTDTLKELQGLATNQP 204
Score = 145 (56.1 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 44/136 (32%), Positives = 61/136 (44%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATP
Sbjct: 69 YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPHVVIATP 128
Query: 1412 GALSLKRIDLAKSIEYLESKIK---KNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENA 1468
G L+ L S + KI+ + D LE+ D E ++ R+
Sbjct: 129 GRLA---DHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADL--ETILSAVPARRQTL 183
Query: 1469 LMSKALVSKRKELQSL 1484
L S L KELQ L
Sbjct: 184 LFSATLTDTLKELQGL 199
Score = 114 (45.2 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELRLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 827 IL 828
IL
Sbjct: 60 IL 61
Score = 114 (45.2 bits), Expect = 2.2e-36, Sum P(4) = 2.2e-36
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELRLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 210 IL 211
IL
Sbjct: 60 IL 61
Score = 73 (30.8 bits), Expect = 5.0e-22, Sum P(3) = 5.0e-22
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV--DLPDFPIDESVLSLI 1294
P ++HR GRTARA +G + L+ +I L +++E+++ L + ++E+ + I
Sbjct: 329 PKIYIHRVGRTARAGRQGQAITLVTQYDIHL----LHAIEEEIKQQLAELAVEEAQVLQI 384
Query: 1295 KKRIDLAK 1302
++++ +
Sbjct: 385 LTQVNVVR 392
Score = 44 (20.5 bits), Expect = 2.3e-22, Sum P(4) = 2.3e-22
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
RQT +FSATLT
Sbjct: 180 RQTLLFSATLT 190
Score = 41 (19.5 bits), Expect = 2.2e-36, Sum P(4) = 2.2e-36
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
L ++N +V E + +E+ HF E K I R M
Sbjct: 385 LTQVN-VVRRECEIKLEASHFDEKKEINKRKQM 416
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 219 (82.2 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 54/162 (33%), Positives = 85/162 (52%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKIL-CKHDEKDSYLY-YFILQHPGR 546
TL E+++ L + +P +++ + GIT E + + +EK S L +++P
Sbjct: 186 TLPEDVERLSRTYMNAPTHIEI-KAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDS 244
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
++FC + +V + + L + +H M Q R +D FR L+ATDVAAR
Sbjct: 245 CIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAAR 304
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
G+DI I HVI+Y +P E Y+HR+GRT RA N G + I
Sbjct: 305 GIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFI 346
Score = 215 (80.7 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 56/161 (34%), Positives = 85/161 (52%)
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
E V+ NK AL+L PTRELA+QV+ I + G++ +K A + G +Q L +
Sbjct: 64 EMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKT 123
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
HI+V TPGR+ + I+ G L L YLVIDE D M+ G +++ I+D E
Sbjct: 124 HIVVGTPGRVLDHIEKGTLSLERL---KYLVIDEADEMLNMGFIDQVEAIID-----ELP 175
Query: 371 QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
R TM+ S PE ++R++ T + P + +A +T
Sbjct: 176 TKRMTMLFSATLPE---DVERLSRTYMNAPTHIEIKAAGIT 213
Score = 215 (80.7 bits), Expect = 6.7e-23, Sum P(3) = 6.7e-23
Identities = 58/204 (28%), Positives = 93/204 (45%)
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
E V+ NK AL+L PTRELA+QV+ I + G++ +K A + G +Q L +
Sbjct: 64 EMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKT 123
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
HI+V TPGR+ + I+ G L L YLVIDE D M+ G +++ I+D E
Sbjct: 124 HIVVGTPGRVLDHIEKGTLSLERL---KYLVIDEADEMLNMGFIDQVEAIID-----ELP 175
Query: 988 QPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQD-LLNIKSPKIVDLTEK 1046
R T +FSATL + +++ L ++ + + L +
Sbjct: 176 TKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKD 235
Query: 1047 IGITKTLTESKILCKHDEKDSYLY 1070
+ + I C+ E ++Y
Sbjct: 236 VTTIENPDSCIIFCRTQENVDHVY 259
Score = 211 (79.3 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 50/149 (33%), Positives = 78/149 (52%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKIL-CKHDEKDSYLY-YFILQHPGRTLVFCNSISSVKR 1092
+ +P +++ + GIT E + + +EK S L +++P ++FC + +V
Sbjct: 199 MNAPTHIEI-KAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRTQENVDH 257
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152
+ + L + +H M Q R +D FR L+ATDVAARG+DI I HVI+Y
Sbjct: 258 VYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINY 317
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
+P E Y+HR+GRT RA N G + I
Sbjct: 318 DIPLEKESYVHRTGRTGRAGNSGKAITFI 346
Score = 119 (46.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA+QV+ I + G++ +K A + G +Q L + HI+V TPG +
Sbjct: 75 ALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRV- 133
Query: 1416 LKRIDLAK-SIEYLE 1429
L I+ S+E L+
Sbjct: 134 LDHIEKGTLSLERLK 148
Score = 118 (46.6 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+ + + + RAL G++ PT++Q V+P AL +KD+V ++TGSGKT +FGIP+
Sbjct: 9 YALSKEVRRALTGLGYEHPTEVQGEVIPVAL-QKKDLVVKSQTGSGKTASFGIPL 62
Score = 118 (46.6 bits), Expect = 6.7e-23, Sum P(3) = 6.7e-23
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+ + + + RAL G++ PT++Q V+P AL +KD+V ++TGSGKT +FGIP+
Sbjct: 9 YALSKEVRRALTGLGYEHPTEVQGEVIPVAL-QKKDLVVKSQTGSGKTASFGIPL 62
Score = 61 (26.5 bits), Expect = 6.7e-23, Sum P(3) = 6.7e-23
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLI 1260
++++HR+GRT RA N G + I
Sbjct: 324 ESYVHRTGRTGRAGNSGKAITFI 346
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 219 (82.2 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 54/162 (33%), Positives = 85/162 (52%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKIL-CKHDEKDSYLY-YFILQHPGR 546
TL E+++ L + +P +++ + GIT E + + +EK S L +++P
Sbjct: 186 TLPEDVERLSRTYMNAPTHIEI-KAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDS 244
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
++FC + +V + + L + +H M Q R +D FR L+ATDVAAR
Sbjct: 245 CIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAAR 304
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
G+DI I HVI+Y +P E Y+HR+GRT RA N G + I
Sbjct: 305 GIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFI 346
Score = 215 (80.7 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 56/161 (34%), Positives = 85/161 (52%)
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
E V+ NK AL+L PTRELA+QV+ I + G++ +K A + G +Q L +
Sbjct: 64 EMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKT 123
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
HI+V TPGR+ + I+ G L L YLVIDE D M+ G +++ I+D E
Sbjct: 124 HIVVGTPGRVLDHIEKGTLSLERL---KYLVIDEADEMLNMGFIDQVEAIID-----ELP 175
Query: 371 QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
R TM+ S PE ++R++ T + P + +A +T
Sbjct: 176 TKRMTMLFSATLPE---DVERLSRTYMNAPTHIEIKAAGIT 213
Score = 215 (80.7 bits), Expect = 6.7e-23, Sum P(3) = 6.7e-23
Identities = 58/204 (28%), Positives = 93/204 (45%)
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
E V+ NK AL+L PTRELA+QV+ I + G++ +K A + G +Q L +
Sbjct: 64 EMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKT 123
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
HI+V TPGR+ + I+ G L L YLVIDE D M+ G +++ I+D E
Sbjct: 124 HIVVGTPGRVLDHIEKGTLSLERL---KYLVIDEADEMLNMGFIDQVEAIID-----ELP 175
Query: 988 QPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQD-LLNIKSPKIVDLTEK 1046
R T +FSATL + +++ L ++ + + L +
Sbjct: 176 TKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKD 235
Query: 1047 IGITKTLTESKILCKHDEKDSYLY 1070
+ + I C+ E ++Y
Sbjct: 236 VTTIENPDSCIIFCRTQENVDHVY 259
Score = 211 (79.3 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 50/149 (33%), Positives = 78/149 (52%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKIL-CKHDEKDSYLY-YFILQHPGRTLVFCNSISSVKR 1092
+ +P +++ + GIT E + + +EK S L +++P ++FC + +V
Sbjct: 199 MNAPTHIEI-KAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRTQENVDH 257
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152
+ + L + +H M Q R +D FR L+ATDVAARG+DI I HVI+Y
Sbjct: 258 VYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINY 317
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
+P E Y+HR+GRT RA N G + I
Sbjct: 318 DIPLEKESYVHRTGRTGRAGNSGKAITFI 346
Score = 119 (46.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA+QV+ I + G++ +K A + G +Q L + HI+V TPG +
Sbjct: 75 ALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRV- 133
Query: 1416 LKRIDLAK-SIEYLE 1429
L I+ S+E L+
Sbjct: 134 LDHIEKGTLSLERLK 148
Score = 118 (46.6 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+ + + + RAL G++ PT++Q V+P AL +KD+V ++TGSGKT +FGIP+
Sbjct: 9 YALSKEVRRALTGLGYEHPTEVQGEVIPVAL-QKKDLVVKSQTGSGKTASFGIPL 62
Score = 118 (46.6 bits), Expect = 6.7e-23, Sum P(3) = 6.7e-23
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+ + + + RAL G++ PT++Q V+P AL +KD+V ++TGSGKT +FGIP+
Sbjct: 9 YALSKEVRRALTGLGYEHPTEVQGEVIPVAL-QKKDLVVKSQTGSGKTASFGIPL 62
Score = 61 (26.5 bits), Expect = 6.7e-23, Sum P(3) = 6.7e-23
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLI 1260
++++HR+GRT RA N G + I
Sbjct: 324 ESYVHRTGRTGRAGNSGKAITFI 346
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 223 (83.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 64/238 (26%), Positives = 123/238 (51%)
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTL 1081
DP I+R+ + + P+ + + K + + + + +K L + +Q P +
Sbjct: 187 DP-IRRIAERF-MTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAI 244
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF + V L++ L + + +H + Q +R+ L +F++ + +L+ATDVAARGL
Sbjct: 245 VFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGL 304
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
DI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E + + ++K+D
Sbjct: 305 DISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMD 364
Query: 1202 LPDFP-IDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLV 1258
D P +DE++ ++R+ +A E L+S I+ N + R N+ +T+V
Sbjct: 365 RMDAPTLDEALEG--QQRL-IA---EKLQSTIE-NENLAYYKRIAEEMLEENDSVTVV 415
Score = 206 (77.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 44/126 (34%), Positives = 70/126 (55%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 994 VFSATL 999
+FSAT+
Sbjct: 180 LFSATM 185
Score = 206 (77.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 47/141 (33%), Positives = 77/141 (54%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT+
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 377 IESGHFPE-LKNILDRVTMTE 396
+ S P+ ++ I +R MTE
Sbjct: 180 LFSATMPDPIRRIAERF-MTE 199
Score = 203 (76.5 bits), Expect = 4.9e-37, Sum P(3) = 4.9e-37
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+Q P +VF + V L++ L + + +H + Q +R+ L +F++ + +L+A
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
TDVAARGLDI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 143 (55.4 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V TPG
Sbjct: 70 SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
Query: 1413 AL 1414
+
Sbjct: 130 RI 131
Score = 125 (49.1 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 210 IL 211
+L
Sbjct: 60 LL 61
Score = 125 (49.1 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 827 IL 828
+L
Sbjct: 60 LL 61
Score = 81 (33.6 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESV 1290
P++++HR GRT RA +G+ ++ + E + + ++K+D D P +DE++
Sbjct: 321 PESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
Score = 46 (21.3 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
L+N+ + V + E + M+ G +++ IL T+ + QT +FSAT+
Sbjct: 142 LQNV-ETVVLDEADE----MLNMGFIEDIEAIL-----TDVPETHQTLLFSATM 185
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 223 (83.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 64/238 (26%), Positives = 123/238 (51%)
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTL 1081
DP I+R+ + + P+ + + K + + + + +K L + +Q P +
Sbjct: 187 DP-IRRIAERF-MTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAI 244
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF + V L++ L + + +H + Q +R+ L +F++ + +L+ATDVAARGL
Sbjct: 245 VFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGL 304
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
DI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E + + ++K+D
Sbjct: 305 DISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMD 364
Query: 1202 LPDFP-IDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLV 1258
D P +DE++ ++R+ +A E L+S I+ N + R N+ +T+V
Sbjct: 365 RMDAPTLDEALEG--QQRL-IA---EKLQSTIE-NENLAYYKRIAEEMLEENDSVTVV 415
Score = 206 (77.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 44/126 (34%), Positives = 70/126 (55%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 994 VFSATL 999
+FSAT+
Sbjct: 180 LFSATM 185
Score = 206 (77.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 47/141 (33%), Positives = 77/141 (54%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT+
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 377 IESGHFPE-LKNILDRVTMTE 396
+ S P+ ++ I +R MTE
Sbjct: 180 LFSATMPDPIRRIAERF-MTE 199
Score = 203 (76.5 bits), Expect = 4.9e-37, Sum P(3) = 4.9e-37
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+Q P +VF + V L++ L + + +H + Q +R+ L +F++ + +L+A
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
TDVAARGLDI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 143 (55.4 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V TPG
Sbjct: 70 SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
Query: 1413 AL 1414
+
Sbjct: 130 RI 131
Score = 125 (49.1 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 210 IL 211
+L
Sbjct: 60 LL 61
Score = 125 (49.1 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 827 IL 828
+L
Sbjct: 60 LL 61
Score = 81 (33.6 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESV 1290
P++++HR GRT RA +G+ ++ + E + + ++K+D D P +DE++
Sbjct: 321 PESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
Score = 46 (21.3 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
L+N+ + V + E + M+ G +++ IL T+ + QT +FSAT+
Sbjct: 142 LQNV-ETVVLDEADE----MLNMGFIEDIEAIL-----TDVPETHQTLLFSATM 185
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 223 (83.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 64/238 (26%), Positives = 123/238 (51%)
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTL 1081
DP I+R+ + + P+ + + K + + + + +K L + +Q P +
Sbjct: 187 DP-IRRIAERF-MTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAI 244
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF + V L++ L + + +H + Q +R+ L +F++ + +L+ATDVAARGL
Sbjct: 245 VFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGL 304
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
DI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E + + ++K+D
Sbjct: 305 DISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMD 364
Query: 1202 LPDFP-IDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLV 1258
D P +DE++ ++R+ +A E L+S I+ N + R N+ +T+V
Sbjct: 365 RMDAPTLDEALEG--QQRL-IA---EKLQSTIE-NENLAYYKRIAEEMLEENDSVTVV 415
Score = 206 (77.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 44/126 (34%), Positives = 70/126 (55%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 994 VFSATL 999
+FSAT+
Sbjct: 180 LFSATM 185
Score = 206 (77.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 47/141 (33%), Positives = 77/141 (54%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT+
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 377 IESGHFPE-LKNILDRVTMTE 396
+ S P+ ++ I +R MTE
Sbjct: 180 LFSATMPDPIRRIAERF-MTE 199
Score = 203 (76.5 bits), Expect = 4.9e-37, Sum P(3) = 4.9e-37
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+Q P +VF + V L++ L + + +H + Q +R+ L +F++ + +L+A
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
TDVAARGLDI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 143 (55.4 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V TPG
Sbjct: 70 SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
Query: 1413 AL 1414
+
Sbjct: 130 RI 131
Score = 125 (49.1 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 210 IL 211
+L
Sbjct: 60 LL 61
Score = 125 (49.1 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 827 IL 828
+L
Sbjct: 60 LL 61
Score = 81 (33.6 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESV 1290
P++++HR GRT RA +G+ ++ + E + + ++K+D D P +DE++
Sbjct: 321 PESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
Score = 46 (21.3 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
L+N+ + V + E + M+ G +++ IL T+ + QT +FSAT+
Sbjct: 142 LQNV-ETVVLDEADE----MLNMGFIEDIEAIL-----TDVPETHQTLLFSATM 185
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 223 (83.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 64/238 (26%), Positives = 123/238 (51%)
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTL 1081
DP I+R+ + + P+ + + K + + + + +K L + +Q P +
Sbjct: 187 DP-IRRIAERF-MTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAI 244
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF + V L++ L + + +H + Q +R+ L +F++ + +L+ATDVAARGL
Sbjct: 245 VFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGL 304
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
DI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E + + ++K+D
Sbjct: 305 DISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMD 364
Query: 1202 LPDFP-IDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLV 1258
D P +DE++ ++R+ +A E L+S I+ N + R N+ +T+V
Sbjct: 365 RMDAPTLDEALEG--QQRL-IA---EKLQSTIE-NENLAYYKRIAEEMLEENDSVTVV 415
Score = 206 (77.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 44/126 (34%), Positives = 70/126 (55%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 994 VFSATL 999
+FSAT+
Sbjct: 180 LFSATM 185
Score = 206 (77.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 47/141 (33%), Positives = 77/141 (54%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT+
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 377 IESGHFPE-LKNILDRVTMTE 396
+ S P+ ++ I +R MTE
Sbjct: 180 LFSATMPDPIRRIAERF-MTE 199
Score = 203 (76.5 bits), Expect = 4.9e-37, Sum P(3) = 4.9e-37
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+Q P +VF + V L++ L + + +H + Q +R+ L +F++ + +L+A
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
TDVAARGLDI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 143 (55.4 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V TPG
Sbjct: 70 SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
Query: 1413 AL 1414
+
Sbjct: 130 RI 131
Score = 125 (49.1 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 210 IL 211
+L
Sbjct: 60 LL 61
Score = 125 (49.1 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 827 IL 828
+L
Sbjct: 60 LL 61
Score = 81 (33.6 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESV 1290
P++++HR GRT RA +G+ ++ + E + + ++K+D D P +DE++
Sbjct: 321 PESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
Score = 46 (21.3 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
L+N+ + V + E + M+ G +++ IL T+ + QT +FSAT+
Sbjct: 142 LQNV-ETVVLDEADE----MLNMGFIEDIEAIL-----TDVPETHQTLLFSATM 185
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 223 (83.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 64/238 (26%), Positives = 123/238 (51%)
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTL 1081
DP I+R+ + + P+ + + K + + + + +K L + +Q P +
Sbjct: 187 DP-IRRIAERF-MTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAI 244
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF + V L++ L + + +H + Q +R+ L +F++ + +L+ATDVAARGL
Sbjct: 245 VFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGL 304
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
DI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E + + ++K+D
Sbjct: 305 DISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMD 364
Query: 1202 LPDFP-IDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLV 1258
D P +DE++ ++R+ +A E L+S I+ N + R N+ +T+V
Sbjct: 365 RMDAPTLDEALEG--QQRL-IA---EKLQSTIE-NENLAYYKRIAEEMLEENDSVTVV 415
Score = 206 (77.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 44/126 (34%), Positives = 70/126 (55%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 994 VFSATL 999
+FSAT+
Sbjct: 180 LFSATM 185
Score = 206 (77.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 47/141 (33%), Positives = 77/141 (54%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT+
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 377 IESGHFPE-LKNILDRVTMTE 396
+ S P+ ++ I +R MTE
Sbjct: 180 LFSATMPDPIRRIAERF-MTE 199
Score = 203 (76.5 bits), Expect = 4.9e-37, Sum P(3) = 4.9e-37
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+Q P +VF + V L++ L + + +H + Q +R+ L +F++ + +L+A
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
TDVAARGLDI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 143 (55.4 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V TPG
Sbjct: 70 SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
Query: 1413 AL 1414
+
Sbjct: 130 RI 131
Score = 125 (49.1 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 210 IL 211
+L
Sbjct: 60 LL 61
Score = 125 (49.1 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 827 IL 828
+L
Sbjct: 60 LL 61
Score = 81 (33.6 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESV 1290
P++++HR GRT RA +G+ ++ + E + + ++K+D D P +DE++
Sbjct: 321 PESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
Score = 46 (21.3 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
L+N+ + V + E + M+ G +++ IL T+ + QT +FSAT+
Sbjct: 142 LQNV-ETVVLDEADE----MLNMGFIEDIEAIL-----TDVPETHQTLLFSATM 185
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 223 (83.6 bits), Expect = 3.1e-39, Sum P(3) = 3.1e-39
Identities = 64/238 (26%), Positives = 123/238 (51%)
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTL 1081
DP I+R+ + + P+ + + K + + + + +K L + +Q P +
Sbjct: 187 DP-IRRIAERF-MTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAI 244
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF + V L++ L + + +H + Q +R+ L +F++ + +L+ATDVAARGL
Sbjct: 245 VFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGL 304
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
DI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E + + ++K+D
Sbjct: 305 DISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMD 364
Query: 1202 LPDFP-IDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLV 1258
D P +DE++ ++R+ +A E L+S I+ N + R N+ +T+V
Sbjct: 365 RMDAPTLDEALEG--QQRL-IA---EKLQSTIE-NENLAYYKRIAEEMLEENDSVTVV 415
Score = 206 (77.6 bits), Expect = 3.1e-39, Sum P(3) = 3.1e-39
Identities = 44/126 (34%), Positives = 70/126 (55%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 994 VFSATL 999
+FSAT+
Sbjct: 180 LFSATM 185
Score = 206 (77.6 bits), Expect = 3.1e-39, Sum P(3) = 3.1e-39
Identities = 47/141 (33%), Positives = 77/141 (54%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT+
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 377 IESGHFPE-LKNILDRVTMTE 396
+ S P+ ++ I +R MTE
Sbjct: 180 LFSATMPDPIRRIAERF-MTE 199
Score = 203 (76.5 bits), Expect = 5.2e-37, Sum P(3) = 5.2e-37
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+Q P +VF + V L++ L + + +H + Q +R+ L +F++ + +L+A
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
TDVAARGLDI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 143 (55.4 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V TPG
Sbjct: 70 SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
Query: 1413 AL 1414
+
Sbjct: 130 RI 131
Score = 125 (49.1 bits), Expect = 3.1e-39, Sum P(3) = 3.1e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 210 IL 211
+L
Sbjct: 60 LL 61
Score = 125 (49.1 bits), Expect = 3.1e-39, Sum P(3) = 3.1e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 827 IL 828
+L
Sbjct: 60 LL 61
Score = 81 (33.6 bits), Expect = 2.3e-24, Sum P(3) = 2.3e-24
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESV 1290
P++++HR GRT RA +G+ ++ + E + + ++K+D D P +DE++
Sbjct: 321 PESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
Score = 46 (21.3 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
L+N+ + V + E + M+ G +++ IL T+ + QT +FSAT+
Sbjct: 142 LQNV-ETVVLDEADE----MLNMGFIEDIEAIL-----TDVPETHQTLLFSATM 185
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 244 (91.0 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 68/222 (30%), Positives = 114/222 (51%)
Query: 1029 LQDLLN-IKS-----PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHPG 1078
L D LN +KS P + ++ L + +L KD+YL + I +H
Sbjct: 192 LTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQTFQDEHED 251
Query: 1079 RTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
+++ F + + L +L + LH+ M QRQR L +F+ IL+ATDVA
Sbjct: 252 WSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKILIATDVA 311
Query: 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197
ARGLDIP ++ VI+++ P +IYIHR GRTARA G+++ ++ +I L + E
Sbjct: 312 ARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHL-VHAIEE-E 369
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAK-----SIEYLESKIKK 1234
K+ L +F ++E ++ I +++ + +EY++ KK
Sbjct: 370 IKLKLQEFSVEEKLVLDILTHVNVTRRECEIELEYMDFDEKK 411
Score = 231 (86.4 bits), Expect = 6.5e-36, Sum P(3) = 6.5e-36
Identities = 56/172 (32%), Positives = 91/172 (52%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHP 544
TL + + +L L + P + ++ L + +L KD+YL + I +H
Sbjct: 191 TLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQTFQDEHE 250
Query: 545 GRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++ F + + L +L + LH+ M QRQR L +F+ IL+ATDV
Sbjct: 251 DWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKILIATDV 310
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
AARGLDIP ++ VI+++ P +IYIHR GRTARA G+++ ++ +I L
Sbjct: 311 AARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHL 362
Score = 197 (74.4 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 50/127 (39%), Positives = 74/127 (58%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
++ L+L PTRELA Q+ GK +K VVGG+ Q L++ PH+++ATPGR
Sbjct: 74 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIATPGR 133
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFP-ELKNILDRVTMTETSQPRQTF 993
L + ++ + L K+ +LV+DE DR++E G F +L+ IL+ V RQT
Sbjct: 134 LADHLRSSNTF--SLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPAR-----RQTL 186
Query: 994 VFSATLT 1000
+FSATLT
Sbjct: 187 LFSATLT 193
Score = 180 (68.4 bits), Expect = 2.0e-37, Sum P(3) = 2.0e-37
Identities = 48/138 (34%), Positives = 75/138 (54%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
++ L+L PTRELA Q+ GK +K VVGG+ Q L++ PH+++ATPGR
Sbjct: 74 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIATPGR 133
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFP-ELKNILDRVTMTETSQPRQTM 376
L + ++ + L K+ +LV+DE DR++E G F +L+ IL+ V RQT+
Sbjct: 134 LADHLRSSNTF--SLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPAR-----RQTL 186
Query: 377 IESGHFPELKNILDRVTM 394
+ S + N L + M
Sbjct: 187 LFSATLTDTLNELKSLAM 204
Score = 138 (53.6 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 42/134 (31%), Positives = 63/134 (47%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y L+L PTRELA Q+ GK +K VVGG+ Q L++ PH+++ATP
Sbjct: 72 YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIATP 131
Query: 1412 GALSLK-RIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALM 1470
G L+ R S++ L+ + + D LE+ D E +++ R+ L
Sbjct: 132 GRLADHLRSSNTFSLKKLKFLVL-DEADRLLEQGCADFTADL--EVILEAVPARRQTLLF 188
Query: 1471 SKALVSKRKELQSL 1484
S L EL+SL
Sbjct: 189 SATLTDTLNELKSL 202
Score = 107 (42.7 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
MA + + + ++ Q G PT +Q+ +P L R D +G A+TGSGKT AF +P
Sbjct: 4 MAAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGR-DCLGCAKTGSGKTAAFVLP 62
Query: 210 IL 211
+L
Sbjct: 63 VL 64
Score = 107 (42.7 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
MA + + + ++ Q G PT +Q+ +P L R D +G A+TGSGKT AF +P
Sbjct: 4 MAAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGR-DCLGCAKTGSGKTAAFVLP 62
Query: 827 IL 828
+L
Sbjct: 63 VL 64
Score = 86 (35.3 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P ++HR GRTARA G+++ ++ +I L + E K+ L +F ++E ++ I
Sbjct: 332 PKIYIHRVGRTARAGRNGISITMVTQYDIHL-VHAIEE-EIKLKLQEFSVEEKLVLDILT 389
Query: 1297 RIDLAK-----SIEYLESKIKK 1313
+++ + +EY++ KK
Sbjct: 390 HVNVTRRECEIELEYMDFDEKK 411
Score = 44 (20.5 bits), Expect = 2.5e-23, Sum P(3) = 2.5e-23
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
RQT +FSATLT
Sbjct: 183 RQTLLFSATLT 193
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 234 (87.4 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 64/209 (30%), Positives = 110/209 (52%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRL 1093
+K+P V+++ K TL E+ I K +YL + R ++ F N+ ++ ++L
Sbjct: 352 LKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKL 411
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
L + LH + Q QRL +L+ F+ +IL++T V ARGLD+ I+ VI++
Sbjct: 412 NFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFD 471
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDES-V 1211
+ E YIHR GRTARA G ++ + ++ ++ + L KK+D D +DE+ V
Sbjct: 472 ICSCKE-YIHRVGRTARAGRSGKSITFVTQYDVENFLAIEKQLNKKIDKFTD--LDENDV 528
Query: 1212 LSLIKKRIDLAK--SIEYLESK--IKKNR 1236
L ++ I+ + IE E++ KKN+
Sbjct: 529 LLYHEQTIEALRLSEIEMKENQELYKKNK 557
Score = 207 (77.9 bits), Expect = 4.7e-34, Sum P(4) = 4.7e-34
Identities = 48/153 (31%), Positives = 81/153 (52%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRL 560
+K+P V+++ K TL E+ I K +YL + R ++ F N+ ++ ++L
Sbjct: 352 LKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKL 411
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
L + LH + Q QRL +L+ F+ +IL++T V ARGLD+ I+ VI++
Sbjct: 412 NFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFD 471
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+ E YIHR GRTARA G ++ + ++
Sbjct: 472 ICSCKE-YIHRVGRTARAGRSGKSITFVTQYDV 503
Score = 167 (63.8 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 39/131 (29%), Positives = 71/131 (54%)
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
+K + YAL+++PTREL IQ+ + G + + + GG+ Q L K P++
Sbjct: 218 LKVNKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNV 277
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
+V+TPGR+ + L + L + YLV DE D+++ + ++ ++++ +
Sbjct: 278 IVSTPGRILD--HLNNTKGFNLKNLKYLVFDEADKLLSQ----DFESSINKLLLILPPN- 330
Query: 990 RQTFVFSATLT 1000
R TF+FSAT+T
Sbjct: 331 RITFLFSATMT 341
Score = 153 (58.9 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 35/76 (46%), Positives = 49/76 (64%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
NE+ Q + NI E I+ ++ + G+K PT+IQ ++P A L +KDI+G +ETGSGK
Sbjct: 148 NEEREKQNVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFL-KKDIIGLSETGSGK 206
Query: 203 TLAFGIPILTGI-VNK 217
T F IPIL + VNK
Sbjct: 207 TACFIIPILQDLKVNK 222
Score = 153 (58.9 bits), Expect = 7.0e-39, Sum P(4) = 7.0e-39
Identities = 35/76 (46%), Positives = 49/76 (64%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
NE+ Q + NI E I+ ++ + G+K PT+IQ ++P A L +KDI+G +ETGSGK
Sbjct: 148 NEEREKQNVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFL-KKDIIGLSETGSGK 206
Query: 820 TLAFGIPILTGI-VNK 834
T F IPIL + VNK
Sbjct: 207 TACFIIPILQDLKVNK 222
Score = 150 (57.9 bits), Expect = 3.9e-37, Sum P(4) = 3.9e-37
Identities = 32/109 (29%), Positives = 56/109 (51%)
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
+K + YAL+++PTREL IQ+ + G + + + GG+ Q L K P++
Sbjct: 218 LKVNKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNV 277
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
+V+TPGR+ + L + L + YLV DE D+++ + +L
Sbjct: 278 IVSTPGRILD--HLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLL 324
Score = 107 (42.7 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
+ S+ AL+++PTREL IQ+ + G + + + GG+ Q L K P+++V+T
Sbjct: 222 KQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNVIVST 281
Query: 1411 PGAL-----SLKRIDLAKSIEYL 1428
PG + + K +L K+++YL
Sbjct: 282 PGRILDHLNNTKGFNL-KNLKYL 303
Score = 83 (34.3 bits), Expect = 1.0e-22, Sum P(4) = 1.0e-22
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDES-VLSLIKKR 1297
++HR GRTARA G ++ + ++ ++ + L KK+D D +DE+ VL ++
Sbjct: 478 YIHRVGRTARAGRSGKSITFVTQYDVENFLAIEKQLNKKIDKFTD--LDENDVLLYHEQT 535
Query: 1298 IDLAK--SIEYLESK--IKKNR 1315
I+ + IE E++ KKN+
Sbjct: 536 IEALRLSEIEMKENQELYKKNK 557
Score = 44 (20.5 bits), Expect = 2.8e-21, Sum P(5) = 2.8e-21
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 446 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
+K+P V+++ K TL E+ I K +YL + R +
Sbjct: 352 LKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNI 398
Score = 40 (19.1 bits), Expect = 7.0e-39, Sum P(4) = 7.0e-39
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 596
+K+ QL K H + ++++ KNL++ +QNN+
Sbjct: 42 IKKKEQLKLQKKQIKKQEHKN-EKKKKNKNLNKKHNQNNT 80
Score = 40 (19.1 bits), Expect = 3.9e-37, Sum P(4) = 3.9e-37
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
R TF+FSAT+T
Sbjct: 331 RITFLFSATMT 341
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 234 (87.4 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 64/209 (30%), Positives = 110/209 (52%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRL 1093
+K+P V+++ K TL E+ I K +YL + R ++ F N+ ++ ++L
Sbjct: 352 LKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKL 411
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
L + LH + Q QRL +L+ F+ +IL++T V ARGLD+ I+ VI++
Sbjct: 412 NFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFD 471
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDES-V 1211
+ E YIHR GRTARA G ++ + ++ ++ + L KK+D D +DE+ V
Sbjct: 472 ICSCKE-YIHRVGRTARAGRSGKSITFVTQYDVENFLAIEKQLNKKIDKFTD--LDENDV 528
Query: 1212 LSLIKKRIDLAK--SIEYLESK--IKKNR 1236
L ++ I+ + IE E++ KKN+
Sbjct: 529 LLYHEQTIEALRLSEIEMKENQELYKKNK 557
Score = 207 (77.9 bits), Expect = 4.7e-34, Sum P(4) = 4.7e-34
Identities = 48/153 (31%), Positives = 81/153 (52%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV-FCNSISSVKRL 560
+K+P V+++ K TL E+ I K +YL + R ++ F N+ ++ ++L
Sbjct: 352 LKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKL 411
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
L + LH + Q QRL +L+ F+ +IL++T V ARGLD+ I+ VI++
Sbjct: 412 NFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFD 471
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+ E YIHR GRTARA G ++ + ++
Sbjct: 472 ICSCKE-YIHRVGRTARAGRSGKSITFVTQYDV 503
Score = 167 (63.8 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 39/131 (29%), Positives = 71/131 (54%)
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
+K + YAL+++PTREL IQ+ + G + + + GG+ Q L K P++
Sbjct: 218 LKVNKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNV 277
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
+V+TPGR+ + L + L + YLV DE D+++ + ++ ++++ +
Sbjct: 278 IVSTPGRILD--HLNNTKGFNLKNLKYLVFDEADKLLSQ----DFESSINKLLLILPPN- 330
Query: 990 RQTFVFSATLT 1000
R TF+FSAT+T
Sbjct: 331 RITFLFSATMT 341
Score = 153 (58.9 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 35/76 (46%), Positives = 49/76 (64%)
Query: 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 202
NE+ Q + NI E I+ ++ + G+K PT+IQ ++P A L +KDI+G +ETGSGK
Sbjct: 148 NEEREKQNVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFL-KKDIIGLSETGSGK 206
Query: 203 TLAFGIPILTGI-VNK 217
T F IPIL + VNK
Sbjct: 207 TACFIIPILQDLKVNK 222
Score = 153 (58.9 bits), Expect = 7.0e-39, Sum P(4) = 7.0e-39
Identities = 35/76 (46%), Positives = 49/76 (64%)
Query: 760 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
NE+ Q + NI E I+ ++ + G+K PT+IQ ++P A L +KDI+G +ETGSGK
Sbjct: 148 NEEREKQNVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFL-KKDIIGLSETGSGK 206
Query: 820 TLAFGIPILTGI-VNK 834
T F IPIL + VNK
Sbjct: 207 TACFIIPILQDLKVNK 222
Score = 150 (57.9 bits), Expect = 3.9e-37, Sum P(4) = 3.9e-37
Identities = 32/109 (29%), Positives = 56/109 (51%)
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
+K + YAL+++PTREL IQ+ + G + + + GG+ Q L K P++
Sbjct: 218 LKVNKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNV 277
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
+V+TPGR+ + L + L + YLV DE D+++ + +L
Sbjct: 278 IVSTPGRILD--HLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLL 324
Score = 107 (42.7 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 1410
+ S+ AL+++PTREL IQ+ + G + + + GG+ Q L K P+++V+T
Sbjct: 222 KQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNVIVST 281
Query: 1411 PGAL-----SLKRIDLAKSIEYL 1428
PG + + K +L K+++YL
Sbjct: 282 PGRILDHLNNTKGFNL-KNLKYL 303
Score = 83 (34.3 bits), Expect = 1.0e-22, Sum P(4) = 1.0e-22
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDFPIDES-VLSLIKKR 1297
++HR GRTARA G ++ + ++ ++ + L KK+D D +DE+ VL ++
Sbjct: 478 YIHRVGRTARAGRSGKSITFVTQYDVENFLAIEKQLNKKIDKFTD--LDENDVLLYHEQT 535
Query: 1298 IDLAK--SIEYLESK--IKKNR 1315
I+ + IE E++ KKN+
Sbjct: 536 IEALRLSEIEMKENQELYKKNK 557
Score = 44 (20.5 bits), Expect = 2.8e-21, Sum P(5) = 2.8e-21
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 446 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
+K+P V+++ K TL E+ I K +YL + R +
Sbjct: 352 LKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNI 398
Score = 40 (19.1 bits), Expect = 7.0e-39, Sum P(4) = 7.0e-39
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 596
+K+ QL K H + ++++ KNL++ +QNN+
Sbjct: 42 IKKKEQLKLQKKQIKKQEHKN-EKKKKNKNLNKKHNQNNT 80
Score = 40 (19.1 bits), Expect = 3.9e-37, Sum P(4) = 3.9e-37
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
R TF+FSAT+T
Sbjct: 331 RITFLFSATMT 341
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 221 (82.9 bits), Expect = 4.7e-39, Sum P(3) = 4.7e-39
Identities = 53/191 (27%), Positives = 102/191 (53%)
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTL 1081
DP I+R+ + + P+ + + K + + + + +K L + +Q P +
Sbjct: 187 DP-IRRIAERF-MTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAI 244
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF + V L++ L + + +H + Q +R+ L +F++ + +L+ATDVAARGL
Sbjct: 245 VFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGL 304
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
DI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E + + ++K+D
Sbjct: 305 DISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMD 364
Query: 1202 LPDFP-IDESV 1211
D P +DE++
Sbjct: 365 RMDAPTLDEAL 375
Score = 206 (77.6 bits), Expect = 4.7e-39, Sum P(3) = 4.7e-39
Identities = 44/126 (34%), Positives = 70/126 (55%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 994 VFSATL 999
+FSAT+
Sbjct: 180 LFSATM 185
Score = 206 (77.6 bits), Expect = 4.7e-39, Sum P(3) = 4.7e-39
Identities = 47/141 (33%), Positives = 77/141 (54%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
+ + +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V T
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+ + I L + +V+DE D M+ G +++ IL T+ + QT+
Sbjct: 128 PGRILDHINR---KTLRLQNVETVVLDEADEMLNMGFIEDIEAIL-----TDVPETHQTL 179
Query: 377 IESGHFPE-LKNILDRVTMTE 396
+ S P+ ++ I +R MTE
Sbjct: 180 LFSATMPDPIRRIAERF-MTE 199
Score = 203 (76.5 bits), Expect = 4.7e-37, Sum P(3) = 4.7e-37
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+Q P +VF + V L++ L + + +H + Q +R+ L +F++ + +L+A
Sbjct: 237 IQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
TDVAARGLDI G+ HV ++ +P+ E Y+HR GRT RA +G+ ++ + E
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 143 (55.4 bits), Expect = 8.2e-14, Sum P(2) = 8.2e-14
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 1353 SWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
S +++APTRELAIQV + GK+ V++ + GG +Q+R L K PHI+V TPG
Sbjct: 70 SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
Query: 1413 AL 1414
+
Sbjct: 130 RI 131
Score = 125 (49.1 bits), Expect = 4.7e-39, Sum P(3) = 4.7e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 210 IL 211
+L
Sbjct: 60 LL 61
Score = 125 (49.1 bits), Expect = 4.7e-39, Sum P(3) = 4.7e-39
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 827 IL 828
+L
Sbjct: 60 LL 61
Score = 81 (33.6 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESV 1290
P++++HR GRT RA +G+ ++ + E + + ++K+D D P +DE++
Sbjct: 321 PESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
Score = 46 (21.3 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
L+N+ + V + E + M+ G +++ IL T+ + QT +FSAT+
Sbjct: 142 LQNV-ETVVLDEADE----MLNMGFIEDIEAIL-----TDVPETHQTLLFSATM 185
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 237 (88.5 bits), Expect = 5.9e-39, Sum P(3) = 5.9e-39
Identities = 58/204 (28%), Positives = 109/204 (53%)
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHPGRT 1080
++K LQ L P + + + L + +L KD+YL + I +H +
Sbjct: 192 TLKELQGLAT-NQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWS 250
Query: 1081 LV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
++ F N+ + + L +L + LH+ M Q++R L +F+ IL+ATDVA+R
Sbjct: 251 IIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASR 310
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++ VI+++ P +IYIHR GRTARA +G + L+ +I L + ++K+
Sbjct: 311 GLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKQ 370
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAK 1223
++ + ++E+ + I ++++ +
Sbjct: 371 LE--ELSVEEAKVLQILTQVNVVR 392
Score = 226 (84.6 bits), Expect = 7.3e-36, Sum P(4) = 7.3e-36
Identities = 55/172 (31%), Positives = 92/172 (53%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHP 544
TL + +++L L P + + + L + +L KD+YL + I +H
Sbjct: 188 TLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHE 247
Query: 545 GRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++ F N+ + + L +L + LH+ M Q++R L +F+ IL+ATDV
Sbjct: 248 DWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDV 307
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
A+RGLDIP ++ VI+++ P +IYIHR GRTARA +G + L+ +I L
Sbjct: 308 ASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHL 359
Score = 196 (74.1 bits), Expect = 5.9e-39, Sum P(3) = 5.9e-39
Identities = 46/124 (37%), Positives = 72/124 (58%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
++ L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATPGR
Sbjct: 71 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGR 130
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + + KI +LV+DE DR++E G + L+ + ++ RQT +FS
Sbjct: 131 LADHLRSSNTF--SIKKIRFLVMDEADRLLEQG-CTDFTVDLEAILAAVPTR-RQTLLFS 186
Query: 997 ATLT 1000
ATLT
Sbjct: 187 ATLT 190
Score = 177 (67.4 bits), Expect = 7.3e-36, Sum P(4) = 7.3e-36
Identities = 46/141 (32%), Positives = 76/141 (53%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
++ L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATPGR
Sbjct: 71 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGR 130
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ + + KI +LV+DE DR++E G + L+ + ++ RQT++ S
Sbjct: 131 LADHLRSSNTF--SIKKIRFLVMDEADRLLEQG-CTDFTVDLEAILAAVPTR-RQTLLFS 186
Query: 380 GHFPELKNILDRVTMTETSQP 400
L + L + T+QP
Sbjct: 187 A---TLTDTLKELQGLATNQP 204
Score = 144 (55.7 bits), Expect = 7.0e-13, Sum P(2) = 7.0e-13
Identities = 43/134 (32%), Positives = 61/134 (45%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATP
Sbjct: 69 YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128
Query: 1412 GALSLK-RIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALM 1470
G L+ R SI+ + + + D LE+ D E ++ R+ L
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVM-DEADRLLEQGCTDFTVDL--EAILAAVPTRRQTLLF 185
Query: 1471 SKALVSKRKELQSL 1484
S L KELQ L
Sbjct: 186 SATLTDTLKELQGL 199
Score = 114 (45.2 bits), Expect = 5.9e-39, Sum P(3) = 5.9e-39
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 827 IL 828
IL
Sbjct: 60 IL 61
Score = 114 (45.2 bits), Expect = 7.3e-36, Sum P(4) = 7.3e-36
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 210 IL 211
IL
Sbjct: 60 IL 61
Score = 76 (31.8 bits), Expect = 7.7e-22, Sum P(3) = 7.7e-22
Identities = 16/66 (24%), Positives = 38/66 (57%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
P ++HR GRTARA +G + L+ +I L + ++K+++ + ++E+ + I
Sbjct: 329 PKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKQLE--ELSVEEAKVLQILT 386
Query: 1297 RIDLAK 1302
++++ +
Sbjct: 387 QVNVVR 392
Score = 44 (20.5 bits), Expect = 3.0e-22, Sum P(4) = 3.0e-22
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
RQT +FSATLT
Sbjct: 180 RQTLLFSATLT 190
Score = 43 (20.2 bits), Expect = 7.3e-36, Sum P(4) = 7.3e-36
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI-LCKHDEK 1065
+ IK+ + L+++ K++ + ++ + + E K+ DEK
Sbjct: 364 EEQIKKQLEELSVEEAKVLQILTQVNVVRRECEIKLEAANFDEK 407
Score = 43 (20.2 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 434 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI-LCKHDEK 476
+ IK+ + L+++ K++ + ++ + + E K+ DEK
Sbjct: 364 EEQIKKQLEELSVEEAKVLQILTQVNVVRRECEIKLEAANFDEK 407
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 232 (86.7 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 52/126 (41%), Positives = 78/126 (61%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
+YALIL PTRELA Q+ GK +K + +VGG S Q R L++ PH++VATPGR
Sbjct: 158 IYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGR 217
Query: 937 LWEFIQLGHFHLTELYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L + I+ + +++K I + V+DE DRM+E + +LK I + + S+ RQT +
Sbjct: 218 LADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESI-----SEKRQTLLL 272
Query: 996 SATLTH 1001
SAT+T+
Sbjct: 273 SATITN 278
Score = 226 (84.6 bits), Expect = 7.2e-38, Sum P(3) = 7.2e-38
Identities = 53/135 (39%), Positives = 80/135 (59%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
+YALIL PTRELA Q+ GK +K + +VGG S Q R L++ PH++VATPGR
Sbjct: 158 IYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGR 217
Query: 320 LWEFIQLGHFHLTELYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
L + I+ + +++K I + V+DE DRM+E + +LK I + + S+ RQT++
Sbjct: 218 LADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESI-----SEKRQTLLL 272
Query: 379 SGHFPELKNILDRVT 393
S N+L RV+
Sbjct: 273 SATITNNINMLHRVS 287
Score = 210 (79.0 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 47/154 (30%), Positives = 82/154 (53%)
Query: 1053 LTESKILCKHDEKDSYLYYFILQHPGRT-----LVFCNSISSVKRLTQLLTMLKCSPLPL 1107
L + ++C KD+YL Y + + + ++F + + L + L L
Sbjct: 308 LEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSL 367
Query: 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
H+ + Q+QRL L FR + +++ TDVA+RGLDIP ++ V++++VP+ + YIHR GR
Sbjct: 368 HSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGR 427
Query: 1168 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
+ARA G L + ++ L + + KK+D
Sbjct: 428 SARAGRFGSALSFVTQYDVELLQAVEQVIGKKLD 461
Score = 199 (75.1 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 43/141 (30%), Positives = 76/141 (53%)
Query: 520 LTESKILCKHDEKDSYLYYFILQHPGRT-----LVFCNSISSVKRLTQLLTMLKCSPLPL 574
L + ++C KD+YL Y + + + ++F + + L + L L
Sbjct: 308 LEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSL 367
Query: 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
H+ + Q+QRL L FR + +++ TDVA+RGLDIP ++ V++++VP+ + YIHR GR
Sbjct: 368 HSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGR 427
Query: 635 TARANNEGLTVVLIESDEIPL 655
+ARA G + + ++ L
Sbjct: 428 SARAGRFGSALSFVTQYDVEL 448
Score = 136 (52.9 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 30/64 (46%), Positives = 39/64 (60%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y ALIL PTRELA Q+ GK +K + +VGG S Q R L++ PH++VATP
Sbjct: 156 YGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATP 215
Query: 1412 GALS 1415
G L+
Sbjct: 216 GRLA 219
Score = 106 (42.4 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
I + L KT T +Q+ +P +L DI+G A TG+GKTLAF IPIL
Sbjct: 100 ITQQLQTMQIKTATPVQAACIPK-ILEGSDILGCARTGTGKTLAFAIPIL 148
Score = 106 (42.4 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
I + L KT T +Q+ +P +L DI+G A TG+GKTLAF IPIL
Sbjct: 100 ITQQLQTMQIKTATPVQAACIPK-ILEGSDILGCARTGTGKTLAFAIPIL 148
Score = 64 (27.6 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1280
P ++HR GR+ARA G L + ++ L + + KK+D
Sbjct: 418 PKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLD 461
Score = 50 (22.7 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412
M+E + +LK I + + S+ RQT + SAT+T+
Sbjct: 247 MLEGQYNDQLKPIFESI-----SEKRQTLLLSATITN 278
Score = 43 (20.2 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 505 PKIVDLTEKIGITKTLTESKI-----LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKR 559
PKI++ ++ +G +T T + + + D Y Y ++ P R L F
Sbjct: 121 PKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAF-QIAEQFTA 179
Query: 560 LTQLLTMLKCS 570
L + +T LKCS
Sbjct: 180 LGKPIT-LKCS 189
Score = 39 (18.8 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 464 LTESKILCKHDEKDSYLYYFI 484
L + ++C KD+YL Y +
Sbjct: 308 LEQKYVVCPVAVKDAYLVYVV 328
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 236 (88.1 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 60/173 (34%), Positives = 92/173 (53%)
Query: 491 TLCEEIQDLLNIKSPK----IVDLTEKIGITKTLTESKILCKHDEKD-SYLYYFILQ-HP 544
T+ + +L+ + K +VD +K +T T ++ +EK YL Y +
Sbjct: 441 TMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLCKNLYT 500
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
R ++F + +L S LH SM+Q QR+++++ FRD S LLATD+A
Sbjct: 501 ERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDLA 560
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI-ESDEIPLK 656
+RGLDI G++ VI+Y P++ EIY+HR GRTARA G + L E D +K
Sbjct: 561 SRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVK 613
Score = 231 (86.4 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
Identities = 54/143 (37%), Positives = 80/143 (55%)
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEKD-SYLYYFILQ-HPGRTLVFCNSISSVKRLTQLL 1097
+VD +K +T T ++ +EK YL Y + R ++F +
Sbjct: 461 MVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLCKNLYTERVIIFFRQKKIAHHARIIF 520
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
+L S LH SM+Q QR+++++ FRD S LLATD+A+RGLDI G++ VI+Y P++
Sbjct: 521 GLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQS 580
Query: 1158 SEIYIHRSGRTARANNEGLTLVL 1180
EIY+HR GRTARA G + L
Sbjct: 581 LEIYVHRVGRTARAGRSGTAITL 603
Score = 187 (70.9 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
Identities = 48/121 (39%), Positives = 66/121 (54%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
+ILAPTRELAIQ +T +K VGG+S + Q L P +++ATPGR +
Sbjct: 330 VILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFID 389
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
++ + +I LV+DE DRM+E G EL IL T + RQT +FSAT+
Sbjct: 390 HMRNSASFAVDTVEI--LVLDEADRMLEDGFADELNEIL-----TTLPKSRQTMLFSATM 442
Query: 1000 T 1000
T
Sbjct: 443 T 443
Score = 170 (64.9 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 48/134 (35%), Positives = 68/134 (50%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
+ILAPTRELAIQ +T +K VGG+S + Q L P +++ATPGR +
Sbjct: 330 VILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFID 389
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ + +I LV+DE DRM+E G EL IL T + RQTM+ S
Sbjct: 390 HMRNSASFAVDTVEI--LVLDEADRMLEDGFADELNEIL-----TTLPKSRQTMLFSATM 442
Query: 383 PELKNILDRVTMTE 396
+ L RV + +
Sbjct: 443 TSSVDNLIRVGLNK 456
Score = 138 (53.6 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
Identities = 36/91 (39%), Positives = 49/91 (53%)
Query: 133 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
KE D + D A + ++ I+R L GF PT IQS +P AL+ KD+
Sbjct: 238 KEFFAADEPKS-DTNKGNASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMG-KDV 295
Query: 193 VGAAETGSGKTLAFGIPILTGIVNKLEN-PT 222
VG A TGSGKT AF +PIL ++ + + PT
Sbjct: 296 VGGAVTGSGKTAAFVVPILERLLYRPKKVPT 326
Score = 138 (53.6 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
Identities = 36/91 (39%), Positives = 49/91 (53%)
Query: 750 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
KE D + D A + ++ I+R L GF PT IQS +P AL+ KD+
Sbjct: 238 KEFFAADEPKS-DTNKGNASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMG-KDV 295
Query: 810 VGAAETGSGKTLAFGIPILTGIVNKLEN-PT 839
VG A TGSGKT AF +PIL ++ + + PT
Sbjct: 296 VGGAVTGSGKTAAFVVPILERLLYRPKKVPT 326
Score = 112 (44.5 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 39/136 (28%), Positives = 61/136 (44%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA-LS 1415
+ILAPTRELAIQ +T +K VGG+S + Q L P +++ATPG +
Sbjct: 330 VILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFID 389
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
R + +++ +E + + D LE D ++ SR+ L S +
Sbjct: 390 HMRNSASFAVDTVEILVL-DEADRMLEDGFAD-----ELNEILTTLPKSRQTMLFSATMT 443
Query: 1476 SKRKELQSL-LGKSVQ 1490
S L + L K V+
Sbjct: 444 SSVDNLIRVGLNKPVR 459
Score = 58 (25.5 bits), Expect = 3.7e-25, Sum P(3) = 3.7e-25
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
M+E G EL IL T + RQT +FSAT+T
Sbjct: 413 MLEDGFADELNEIL-----TTLPKSRQTMLFSATMT 443
Score = 56 (24.8 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 31/128 (24%), Positives = 59/128 (46%)
Query: 1220 DLAK---SIEYLESKIKKNRPDN---WLHRSGRTARANNEGLTLVLI-ESDE--IPLYIK 1270
DLA I+ +++ I P + ++HR GRTARA G + L E D + +K
Sbjct: 558 DLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVK 617
Query: 1271 MFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXX 1330
+ K+ ID + + +ID + + +E+ +++ + + L +A +M
Sbjct: 618 AGKAQGAKIS--SRIIDAADADSWQAKIDELE--DEVEAVMREEKEEKVLAQADMEMRKG 673
Query: 1331 XXXENLIQ 1338
EN+I+
Sbjct: 674 ---ENMIR 678
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 217 (81.4 bits), Expect = 3.9e-38, Sum P(3) = 3.9e-38
Identities = 57/165 (34%), Positives = 84/165 (50%)
Query: 491 TLCEEIQDLL-NIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRT 547
T ++I + NI PK+V++ EK + + D K + I ++ +
Sbjct: 190 TFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIGSRNWKQV 249
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + L + +T L +H +Q R K L F++ L+ATDVAARG
Sbjct: 250 LVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARG 309
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+DI G+ HVI+Y +P +E Y+HR GRTARA N GL V L+ E
Sbjct: 310 IDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGE 354
Score = 215 (80.7 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 59/185 (31%), Positives = 93/185 (50%)
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQL 1096
PK+V++ EK + + D K + I ++ + LVF + L +
Sbjct: 206 PKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKE 265
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
+T L +H +Q R K L F++ L+ATDVAARG+DI G+ HVI+Y +P
Sbjct: 266 MTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPY 325
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD---LPDFPIDESVLS 1213
+E Y+HR GRTARA N GL + L+ E L + L+ ++ LP + +D + ++
Sbjct: 326 NAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELLDIQLLQQWLPGYELDLTKIA 385
Query: 1214 LIKKR 1218
KR
Sbjct: 386 NSNKR 390
Score = 197 (74.4 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 50/129 (38%), Positives = 73/129 (56%)
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
V+ + +L AL+L PTRELA QV G++T V + GG+ST+KQ+ L I
Sbjct: 70 VQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDI 129
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
L+ATPGRL + ++ L+ I LV DE DRM++ G K +D++T +
Sbjct: 130 LIATPGRLLDLLRTESVSLSN---IETLVFDEADRMLDMG----FKEEIDQITQY-LPKT 181
Query: 990 RQTFVFSAT 998
+QT +FSAT
Sbjct: 182 KQTLLFSAT 190
Score = 192 (72.6 bits), Expect = 3.9e-38, Sum P(3) = 3.9e-38
Identities = 54/152 (35%), Positives = 80/152 (52%)
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
V+ + +L AL+L PTRELA QV G++T V + GG+ST+KQ+ L I
Sbjct: 70 VQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDI 129
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
L+ATPGRL + ++ L+ I LV DE DRM++ G K +D++T +
Sbjct: 130 LIATPGRLLDLLRTESVSLSN---IETLVFDEADRMLDMG----FKEEIDQITQY-LPKT 181
Query: 373 RQTMIESGHFPE-----LKNILDRVTMTETSQ 399
+QT++ S F + KNIL M E +
Sbjct: 182 KQTLLFSATFADDIYKMSKNILVEPKMVEIDE 213
Score = 132 (51.5 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA QV G++T V + GG+ST+KQ+ L IL+ATPG L
Sbjct: 79 ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLL 138
Query: 1415 SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKD 1447
L R + + S+ +E+ + + D L+ K+
Sbjct: 139 DLLRTE-SVSLSNIETLVF-DEADRMLDMGFKE 169
Score = 127 (49.8 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 22/61 (36%), Positives = 42/61 (68%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F++ T+++A+ + + PT+IQ +P +LA+ D++ A+TG+GKT AF +PIL ++
Sbjct: 10 FSLDSTLLKAITESAYDEPTEIQKQSIP-LILAKHDVMARAQTGTGKTAAFALPILQQLI 68
Query: 216 N 216
+
Sbjct: 69 S 69
Score = 127 (49.8 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 22/61 (36%), Positives = 42/61 (68%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F++ T+++A+ + + PT+IQ +P +LA+ D++ A+TG+GKT AF +PIL ++
Sbjct: 10 FSLDSTLLKAITESAYDEPTEIQKQSIP-LILAKHDVMARAQTGTGKTAAFALPILQQLI 68
Query: 833 N 833
+
Sbjct: 69 S 69
Score = 75 (31.5 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1278
ID+ + ++ N D ++HR GRTARA N GL + L+ E L + L+ +
Sbjct: 310 IDIKGLSHVINYELPYNAED-YVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELLDIQ 368
Query: 1279 VD---LPDFPIDESVLSLIKKR 1297
+ LP + +D + ++ KR
Sbjct: 369 LLQQWLPGYELDLTKIANSNKR 390
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 217 (81.4 bits), Expect = 3.9e-38, Sum P(3) = 3.9e-38
Identities = 57/165 (34%), Positives = 84/165 (50%)
Query: 491 TLCEEIQDLL-NIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRT 547
T ++I + NI PK+V++ EK + + D K + I ++ +
Sbjct: 190 TFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIGSRNWKQV 249
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + L + +T L +H +Q R K L F++ L+ATDVAARG
Sbjct: 250 LVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARG 309
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+DI G+ HVI+Y +P +E Y+HR GRTARA N GL V L+ E
Sbjct: 310 IDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGE 354
Score = 215 (80.7 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 59/185 (31%), Positives = 93/185 (50%)
Query: 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQL 1096
PK+V++ EK + + D K + I ++ + LVF + L +
Sbjct: 206 PKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKE 265
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
+T L +H +Q R K L F++ L+ATDVAARG+DI G+ HVI+Y +P
Sbjct: 266 MTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPY 325
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD---LPDFPIDESVLS 1213
+E Y+HR GRTARA N GL + L+ E L + L+ ++ LP + +D + ++
Sbjct: 326 NAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELLDIQLLQQWLPGYELDLTKIA 385
Query: 1214 LIKKR 1218
KR
Sbjct: 386 NSNKR 390
Score = 197 (74.4 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 50/129 (38%), Positives = 73/129 (56%)
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
V+ + +L AL+L PTRELA QV G++T V + GG+ST+KQ+ L I
Sbjct: 70 VQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDI 129
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
L+ATPGRL + ++ L+ I LV DE DRM++ G K +D++T +
Sbjct: 130 LIATPGRLLDLLRTESVSLSN---IETLVFDEADRMLDMG----FKEEIDQITQY-LPKT 181
Query: 990 RQTFVFSAT 998
+QT +FSAT
Sbjct: 182 KQTLLFSAT 190
Score = 192 (72.6 bits), Expect = 3.9e-38, Sum P(3) = 3.9e-38
Identities = 54/152 (35%), Positives = 80/152 (52%)
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
V+ + +L AL+L PTRELA QV G++T V + GG+ST+KQ+ L I
Sbjct: 70 VQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDI 129
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
L+ATPGRL + ++ L+ I LV DE DRM++ G K +D++T +
Sbjct: 130 LIATPGRLLDLLRTESVSLSN---IETLVFDEADRMLDMG----FKEEIDQITQY-LPKT 181
Query: 373 RQTMIESGHFPE-----LKNILDRVTMTETSQ 399
+QT++ S F + KNIL M E +
Sbjct: 182 KQTLLFSATFADDIYKMSKNILVEPKMVEIDE 213
Score = 132 (51.5 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
AL+L PTRELA QV G++T V + GG+ST+KQ+ L IL+ATPG L
Sbjct: 79 ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLL 138
Query: 1415 SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKD 1447
L R + + S+ +E+ + + D L+ K+
Sbjct: 139 DLLRTE-SVSLSNIETLVF-DEADRMLDMGFKE 169
Score = 127 (49.8 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 22/61 (36%), Positives = 42/61 (68%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F++ T+++A+ + + PT+IQ +P +LA+ D++ A+TG+GKT AF +PIL ++
Sbjct: 10 FSLDSTLLKAITESAYDEPTEIQKQSIP-LILAKHDVMARAQTGTGKTAAFALPILQQLI 68
Query: 216 N 216
+
Sbjct: 69 S 69
Score = 127 (49.8 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 22/61 (36%), Positives = 42/61 (68%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F++ T+++A+ + + PT+IQ +P +LA+ D++ A+TG+GKT AF +PIL ++
Sbjct: 10 FSLDSTLLKAITESAYDEPTEIQKQSIP-LILAKHDVMARAQTGTGKTAAFALPILQQLI 68
Query: 833 N 833
+
Sbjct: 69 S 69
Score = 75 (31.5 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1278
ID+ + ++ N D ++HR GRTARA N GL + L+ E L + L+ +
Sbjct: 310 IDIKGLSHVINYELPYNAED-YVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELLDIQ 368
Query: 1279 VD---LPDFPIDESVLSLIKKR 1297
+ LP + +D + ++ KR
Sbjct: 369 LLQQWLPGYELDLTKIANSNKR 390
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 229 (85.7 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
Identities = 57/206 (27%), Positives = 108/206 (52%)
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT---- 1080
++K LQ L P + + + L + +L KD+YL + + +
Sbjct: 192 TLKELQGLAT-NEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLEDCS 250
Query: 1081 -LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
++F N+ + + L +L + LH+ M Q++R L +F+ IL+ATDVA+R
Sbjct: 251 IIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASR 310
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++ VI+++ P +IYIHR GRTARA +G + L+ +I L +++E++
Sbjct: 311 GLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHL----LHAIEEQ 366
Query: 1200 V--DLPDFPIDESVLSLIKKRIDLAK 1223
+ L + ++E+ + I ++++ +
Sbjct: 367 IKQQLAELVVEEAEVLQILTQVNVVR 392
Score = 222 (83.2 bits), Expect = 3.0e-35, Sum P(4) = 3.0e-35
Identities = 53/172 (30%), Positives = 90/172 (52%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT- 547
TL + +++L L P + + + L + +L KD+YL + + +
Sbjct: 188 TLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLE 247
Query: 548 ----LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
++F N+ + + L +L + LH+ M Q++R L +F+ IL+ATDV
Sbjct: 248 DCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDV 307
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
A+RGLDIP ++ VI+++ P +IYIHR GRTARA +G + L+ +I L
Sbjct: 308 ASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHL 359
Score = 199 (75.1 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
Identities = 46/124 (37%), Positives = 72/124 (58%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
++ L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATPGR
Sbjct: 71 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGR 130
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + + KI +LV+DE DR++E G + L+ + ++ RQT +FS
Sbjct: 131 LADHLRSSNTF--NMKKIQFLVMDEADRLLEQG-CTDFTTDLETILAAVPAR-RQTLLFS 186
Query: 997 ATLT 1000
ATLT
Sbjct: 187 ATLT 190
Score = 177 (67.4 bits), Expect = 3.0e-35, Sum P(4) = 3.0e-35
Identities = 45/141 (31%), Positives = 76/141 (53%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
++ L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATPGR
Sbjct: 71 IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGR 130
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ + + KI +LV+DE DR++E G + L+ + ++ RQT++ S
Sbjct: 131 LADHLRSSNTF--NMKKIQFLVMDEADRLLEQG-CTDFTTDLETILAAVPAR-RQTLLFS 186
Query: 380 GHFPELKNILDRVTMTETSQP 400
L + L + T++P
Sbjct: 187 A---TLTDTLKELQGLATNEP 204
Score = 144 (55.7 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 44/136 (32%), Positives = 61/136 (44%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
Y L+L PTRELA Q+ GK +K +VGGM Q L++ PH+++ATP
Sbjct: 69 YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128
Query: 1412 GALSLKRIDLAKSIEYLESKIK---KNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENA 1468
G L+ L S + KI+ + D LE+ D E ++ R+
Sbjct: 129 GRLA---DHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDL--ETILAAVPARRQTL 183
Query: 1469 LMSKALVSKRKELQSL 1484
L S L KELQ L
Sbjct: 184 LFSATLTDTLKELQGL 199
Score = 114 (45.2 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 827 IL 828
IL
Sbjct: 60 IL 61
Score = 114 (45.2 bits), Expect = 3.0e-35, Sum P(4) = 3.0e-35
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 210 IL 211
IL
Sbjct: 60 IL 61
Score = 72 (30.4 bits), Expect = 8.2e-22, Sum P(3) = 8.2e-22
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV--DLPDFPIDESVLSLI 1294
P ++HR GRTARA +G + L+ +I L +++E+++ L + ++E+ + I
Sbjct: 329 PKIYIHRVGRTARAGRQGQAITLVTQYDIHL----LHAIEEQIKQQLAELVVEEAEVLQI 384
Query: 1295 KKRIDLAK 1302
++++ +
Sbjct: 385 LTQVNVVR 392
Score = 44 (20.5 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
RQT +FSATLT
Sbjct: 180 RQTLLFSATLT 190
Score = 41 (19.5 bits), Expect = 3.0e-35, Sum P(4) = 3.0e-35
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
L ++N +V E + +E+ HF E K I R M
Sbjct: 385 LTQVN-VVRRECEIKLEASHFDEKKEINKRKQM 416
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 212 (79.7 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
Identities = 54/188 (28%), Positives = 96/188 (51%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFC 1084
IKR+ + + P+ V + K + + + + +K D+ +Q P +VF
Sbjct: 190 IKRIAERF-MTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFG 248
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
+ V L + L + + +H + Q +R+ L +F++ +L+ATDVAARGLDI
Sbjct: 249 RTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDIS 308
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD 1204
G+ HV ++ VP+ E Y+HR GRT RA G+ + I E + + + ++K+D
Sbjct: 309 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMK 368
Query: 1205 FP-IDESV 1211
P +DE++
Sbjct: 369 EPTLDEAL 376
Score = 198 (74.8 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
Identities = 46/123 (37%), Positives = 68/123 (55%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
+ A+++APTRELAIQV + G+ KV + GG +Q+R L K P+I+V TPGR
Sbjct: 72 IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGR 131
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + I L +N +V+DE D M+ G ++++IL V QT +FS
Sbjct: 132 LLDHINRRTIRLNN---VNTVVMDEADEMLNMGFIDDIESILSNVP-----SEHQTLLFS 183
Query: 997 ATL 999
AT+
Sbjct: 184 ATM 186
Score = 198 (74.8 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
Identities = 50/138 (36%), Positives = 74/138 (53%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
+ A+++APTRELAIQV + G+ KV + GG +Q+R L K P+I+V TPGR
Sbjct: 72 IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGR 131
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + I L +N +V+DE D M+ G ++++IL V QT++ S
Sbjct: 132 LLDHINRRTIRLNN---VNTVVMDEADEMLNMGFIDDIESILSNVP-----SEHQTLLFS 183
Query: 380 GHFPE-LKNILDRVTMTE 396
P +K I +R MTE
Sbjct: 184 ATMPAPIKRIAERF-MTE 200
Score = 197 (74.4 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 41/112 (36%), Positives = 63/112 (56%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+Q P +VF + V L + L + + +H + Q +R+ L +F++ +L+A
Sbjct: 238 IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVA 297
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
TDVAARGLDI G+ HV ++ VP+ E Y+HR GRT RA G+ + I E
Sbjct: 298 TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPRE 349
Score = 134 (52.2 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
FN+ +++A+ + GF+ T IQ+ +P L + KD++G A+TG+GKT AFGIP++ I
Sbjct: 8 FNLSSDLMKAINRMGFEEATPIQAQTIPLGL-SNKDVIGQAQTGTGKTAAFGIPLVEKI 65
Score = 134 (52.2 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
FN+ +++A+ + GF+ T IQ+ +P L + KD++G A+TG+GKT AFGIP++ I
Sbjct: 8 FNLSSDLMKAINRMGFEEATPIQAQTIPLGL-SNKDVIGQAQTGTGKTAAFGIPLVEKI 65
Score = 133 (51.9 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 1346 ESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 1405
ES N++ A+++APTRELAIQV + G+ KV + GG +Q+R L K P+
Sbjct: 68 ESPNIQ----AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPN 123
Query: 1406 ILVATPGAL 1414
I+V TPG L
Sbjct: 124 IIVGTPGRL 132
Score = 79 (32.9 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 22/90 (24%), Positives = 49/90 (54%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESVLSLIK 1295
P++++HR GRT RA G+ + I E + + + ++K+D P +DE++ +
Sbjct: 322 PESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEG--Q 379
Query: 1296 KRIDLAKSIEYLESKIKKNRPDNWLEKAAK 1325
+++ ++E L + I +N + ++ AA+
Sbjct: 380 QQV----TVERLRTTISENNLNFYMTAAAE 405
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 242 (90.2 bits), Expect = 3.7e-38, Sum P(3) = 3.7e-38
Identities = 54/184 (29%), Positives = 105/184 (57%)
Query: 1047 IGITKTLTESKILCKHDEKDSYLYYFILQHP-----GRTLVFCNSISSVKRLTQLLTMLK 1101
+ +TL + +LC ++D L + ++ ++F N+ + L+ L ++
Sbjct: 216 VATVETLDQRYLLCADYDRDMVLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNME 275
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
+ LH M Q++R+ L RF+ L+ATDVAARGLDIP +E V+++ +PRT + Y
Sbjct: 276 IDNVCLHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEY 335
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD--LPDFPIDESVLSLIKKRI 1219
IHR GRTARA +G+++ + P +++ ++E++++ L + PID+ ++ I ++
Sbjct: 336 IHRVGRTARAGRKGMSISIFR---FPRDLELLAAIEEEINTKLTEHPIDQRMVERIFMQV 392
Query: 1220 DLAK 1223
++ +
Sbjct: 393 NVTR 396
Score = 218 (81.8 bits), Expect = 4.6e-34, Sum P(3) = 4.6e-34
Identities = 47/137 (34%), Positives = 79/137 (57%)
Query: 514 IGITKTLTESKILCKHDEKDSYLYYFILQHP-----GRTLVFCNSISSVKRLTQLLTMLK 568
+ +TL + +LC ++D L + ++ ++F N+ + L+ L ++
Sbjct: 216 VATVETLDQRYLLCADYDRDMVLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNME 275
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
+ LH M Q++R+ L RF+ L+ATDVAARGLDIP +E V+++ +PRT + Y
Sbjct: 276 IDNVCLHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEY 335
Query: 629 IHRSGRTARANNEGLTV 645
IHR GRTARA +G+++
Sbjct: 336 IHRVGRTARAGRKGMSI 352
Score = 180 (68.4 bits), Expect = 3.7e-38, Sum P(3) = 3.7e-38
Identities = 49/123 (39%), Positives = 69/123 (56%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
+AL+L PT ELA Q+ L AG+ V+V V GG + + L + PHI+VA PGRL
Sbjct: 77 FALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRL 136
Query: 938 WEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
+ + F L YLV+DE DRM+ +G F E +I++R + +T RQ FS
Sbjct: 137 ADHLTGCDTFSFDNL---KYLVVDEADRML-NGDFDESLSIIERC-LPKT---RQNLFFS 188
Query: 997 ATL 999
AT+
Sbjct: 189 ATM 191
Score = 167 (63.8 bits), Expect = 8.4e-37, Sum P(3) = 8.4e-37
Identities = 44/112 (39%), Positives = 63/112 (56%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
+AL+L PT ELA Q+ L AG+ V+V V GG + + L + PHI+VA PGRL
Sbjct: 77 FALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRL 136
Query: 321 WEFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 371
+ + F L YLV+DE DRM+ +G F E +I++R + +T Q
Sbjct: 137 ADHLTGCDTFSFDNL---KYLVVDEADRML-NGDFDESLSIIERC-LPKTRQ 183
Score = 119 (46.9 bits), Expect = 3.7e-38, Sum P(3) = 3.7e-38
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+++ L + G K T IQ +P A+LA +D +GAA+TGSGKT AF +PIL
Sbjct: 18 LVKQLTKLGLKGATPIQQKCIP-AILAGQDCIGAAKTGSGKTFAFALPIL 66
Score = 119 (46.9 bits), Expect = 3.7e-38, Sum P(3) = 3.7e-38
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+++ L + G K T IQ +P A+LA +D +GAA+TGSGKT AF +PIL
Sbjct: 18 LVKQLTKLGLKGATPIQQKCIP-AILAGQDCIGAAKTGSGKTFAFALPIL 66
Score = 113 (44.8 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PT ELA Q+ L AG+ V+V V GG + + L + PHI+VA PG L+
Sbjct: 78 ALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLA 137
Score = 98 (39.6 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 36/156 (23%), Positives = 80/156 (51%)
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK-----KRIDLAKSIEYLES 1230
+TL +E D + L+ M E+ L F ++ + +LI + +D+ S+E + +
Sbjct: 269 MTLKNMEIDNVCLHGFM-RQKERVAALSRFKSNQ-IRTLIATDVAARGLDIP-SVELVMN 325
Query: 1231 KIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD--LPDFPIDE 1288
+ P ++HR GRTARA +G+++ + P +++ ++E++++ L + PID+
Sbjct: 326 HMLPRTPKEYIHRVGRTARAGRKGMSISIFR---FPRDLELLAAIEEEINTKLTEHPIDQ 382
Query: 1289 SVLSLIKKRIDLAK--SIEYLESKIKKNRPDNWLEK 1322
++ I ++++ + S L++ R N+ K
Sbjct: 383 RMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRK 418
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 240 (89.5 bits), Expect = 5.3e-25, Sum P(2) = 5.3e-25
Identities = 62/174 (35%), Positives = 99/174 (56%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTES--KILCKH-DEKDSYLYYFILQ--H 543
TL +E++ L L+++ P V + + +T TL + KI +H ++ + L + +
Sbjct: 376 TLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRVFN 435
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
G T++FC S V RL + + LH +++Q QR +L +FRD + LLA+DV
Sbjct: 436 QGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLASDV 495
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI-ESDEIPLK 656
A+RGLDI G++ VI+Y++P YIHR GRTARA +G + I ++D LK
Sbjct: 496 ASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLK 549
Score = 232 (86.7 bits), Expect = 6.2e-38, Sum P(3) = 6.2e-38
Identities = 63/220 (28%), Positives = 114/220 (51%)
Query: 1033 LNIKSPKIVDLTEKIGITKTLTES--KILCKH-DEKDSYLYYFILQ--HPGRTLVFCNSI 1087
L+++ P V + + +T TL + KI +H ++ + L + + G T++FC S
Sbjct: 387 LSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSK 446
Query: 1088 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 1147
V RL + + LH +++Q QR +L +FRD + LLA+DVA+RGLDI G++
Sbjct: 447 KEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVK 506
Query: 1148 HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPI 1207
VI+Y++P YIHR GRTARA +G + I ++ L + K +
Sbjct: 507 TVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRS--V 564
Query: 1208 DESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRT 1247
+ ++ + RI+ + E ++S +++ + L ++ +T
Sbjct: 565 SQDNVNFWRNRIE--ELTEDIKSIVREEMKEADLRKAEKT 602
Score = 181 (68.8 bits), Expect = 6.2e-38, Sum P(3) = 6.2e-38
Identities = 44/120 (36%), Positives = 70/120 (58%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LIL PTRELA+Q Q+ + + +++ + +VGG+S + Q L K P +++ATPGRL +
Sbjct: 265 LILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLID 324
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
L + H L + L++DE DR+++ G E+ I++ RQT +FSATL
Sbjct: 325 --HLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTN-----RQTMLFSATL 377
Score = 167 (63.8 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 44/149 (29%), Positives = 79/149 (53%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LIL PTRELA+Q Q+ + + +++ + +VGG+S + Q L K P +++ATPGRL +
Sbjct: 265 LILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLID 324
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
L + H L + L++DE DR+++ G E+ I++ RQTM+ S
Sbjct: 325 --HLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTN-----RQTMLFSATL 377
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLT 411
+ L ++++ + + + + T T
Sbjct: 378 NDEVKTLAKLSLQQPIRVQVDALMQVTST 406
Score = 137 (53.3 bits), Expect = 6.2e-38, Sum P(3) = 6.2e-38
Identities = 39/126 (30%), Positives = 67/126 (53%)
Query: 94 NTNDPDDQ-VNKTEEIQSDEPSSXXXXXXXXXXXTYTS-ANKEL---LEVDTSNNEDMFV 148
N ND DD+ VN+ EE + +E + +NK+ ++V SN + +
Sbjct: 125 NDNDDDDEEVNEEEEEEEEEEDNENEKEINKKQQQQQQQSNKQTTDKIKVLQSNRKLKKI 184
Query: 149 ---QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205
++ + + ++ +++A+ + GF PT IQ+ +P AL KDI+ +A TGSGKT A
Sbjct: 185 VEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNG-KDILASASTGSGKTAA 243
Query: 206 FGIPIL 211
F +P+L
Sbjct: 244 FLLPVL 249
Score = 137 (53.3 bits), Expect = 4.7e-37, Sum P(4) = 4.7e-37
Identities = 39/126 (30%), Positives = 67/126 (53%)
Query: 711 NTNDPDDQ-VNKTEEIQSDEP-HSXXXXXXXXXXXTYTSANKEL---LEVDTSNNEDMFV 765
N ND DD+ VN+ EE + +E + +NK+ ++V SN + +
Sbjct: 125 NDNDDDDEEVNEEEEEEEEEEDNENEKEINKKQQQQQQQSNKQTTDKIKVLQSNRKLKKI 184
Query: 766 ---QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822
++ + + ++ +++A+ + GF PT IQ+ +P AL KDI+ +A TGSGKT A
Sbjct: 185 VEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNG-KDILASASTGSGKTAA 243
Query: 823 FGIPIL 828
F +P+L
Sbjct: 244 FLLPVL 249
Score = 124 (48.7 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 41/143 (28%), Positives = 69/143 (48%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F R + LIL PTRELA+Q Q+ + + +++ + +VGG+S + Q L K
Sbjct: 252 LLFRDSEYR-AIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRK 310
Query: 1403 CPHILVATPGALSLKRIDL-AKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPK 1461
P +++ATPG L ++ ++ LE I + D L+ KD +++
Sbjct: 311 SPDVVIATPGRLIDHLLNAHGIGLDDLEILIL-DEADRLLDMGFKD-----EINKIVESC 364
Query: 1462 ANSRENALMSKALVSKRKELQSL 1484
+R+ L S L + K L L
Sbjct: 365 PTNRQTMLFSATLNDEVKTLAKL 387
Score = 70 (29.7 bits), Expect = 3.9e-20, Sum P(4) = 3.9e-20
Identities = 40/173 (23%), Positives = 78/173 (45%)
Query: 1228 LESKIKKNRPDN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1284
+++ I N P+N ++HR GRTARA +G + I ++ L + K
Sbjct: 505 VKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRS- 563
Query: 1285 PIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPNQLLI 1344
+ + ++ + RI+ + E ++S +++ + L KA K + E +I N
Sbjct: 564 -VSQDNVNFWRNRIE--ELTEDIKSIVREEMKEADLRKAEKTLDKA---EKIIS-NADAN 616
Query: 1345 FESRNLRYSWDALILAPTRELAIQVQNHILDAGKY--TPVKVACVVGGMSTEK 1395
E+ + Y ++EL +++N+I++ GK P+ V V S +K
Sbjct: 617 VETPKVWYKTKQEE-DKSKELW-KIENNIVNPGKKLKAPIDVTGVNNVPSIKK 667
Score = 37 (18.1 bits), Expect = 4.7e-37, Sum P(4) = 4.7e-37
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 435 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468
P+I++++ + K+ L +KI KT+ + K
Sbjct: 69 PTIEKMKQQTHKKTDGQTSLEDKINQRKTVKKLK 102
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 229 (85.7 bits), Expect = 8.9e-38, Sum P(3) = 8.9e-38
Identities = 48/139 (34%), Positives = 87/139 (62%)
Query: 1065 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP---LHASMNQRQRLKNLD 1121
K L + + R++VF + + +RL L L+ + +P + M Q +R +
Sbjct: 234 KVELLKKILTEQAERSIVF---LKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAIS 290
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
RFR+ + +ILLATDVAARG+D+P I HVI++ +PR++++Y+HR GRT RA +G+ + L+
Sbjct: 291 RFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLV 350
Query: 1182 ESDEIPLYIKMFNSLEKKV 1200
E+ + P+ ++ ++++V
Sbjct: 351 EAHDQPMMARVERYIKEEV 369
Score = 226 (84.6 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 47/130 (36%), Positives = 81/130 (62%)
Query: 532 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP---LHASMNQRQRLKNLD 588
K L + + R++VF + + +RL L L+ + +P + M Q +R +
Sbjct: 234 KVELLKKILTEQAERSIVF---LKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAIS 290
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
RFR+ + +ILLATDVAARG+D+P I HVI++ +PR++++Y+HR GRT RA +G+ + L+
Sbjct: 291 RFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLV 350
Query: 649 ESDEIPLKTK 658
E+ + P+ +
Sbjct: 351 EAHDQPMMAR 360
Score = 192 (72.6 bits), Expect = 8.9e-38, Sum P(3) = 8.9e-38
Identities = 49/132 (37%), Positives = 72/132 (54%)
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
+F ++ LIL PTRELA+QV K T + + + GG+ ++ IL
Sbjct: 67 DFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQ 126
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
I+VATPGRL E+I F + I +L++DE DRM++ G P + DR++ TE
Sbjct: 127 DIVVATPGRLLEYIDAERF---DCRAIEWLILDEADRMLDMGFGPTV----DRLS-TECR 178
Query: 988 QPRQTFVFSATL 999
+QT +FSATL
Sbjct: 179 WRKQTLLFSATL 190
Score = 173 (66.0 bits), Expect = 8.4e-36, Sum P(3) = 8.4e-36
Identities = 45/129 (34%), Positives = 69/129 (53%)
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
+F ++ LIL PTRELA+QV K T + + + GG+ ++ IL
Sbjct: 67 DFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQ 126
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
I+VATPGRL E+I F + I +L++DE DRM++ G P + DR++ TE
Sbjct: 127 DIVVATPGRLLEYIDAERF---DCRAIEWLILDEADRMLDMGFGPTV----DRLS-TECR 178
Query: 371 QPRQTMIES 379
+QT++ S
Sbjct: 179 WRKQTLLFS 187
Score = 110 (43.8 bits), Expect = 8.9e-38, Sum P(3) = 8.9e-38
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ A+ + GF PT++Q+ +P AL R D++ +A TG+GKT AF IP L
Sbjct: 14 LLEAIEEMGFSRPTQVQAEAIPQALDGR-DVLASAPTGTGKTAAFVIPAL 62
Score = 110 (43.8 bits), Expect = 8.9e-38, Sum P(3) = 8.9e-38
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ A+ + GF PT++Q+ +P AL R D++ +A TG+GKT AF IP L
Sbjct: 14 LLEAIEEMGFSRPTQVQAEAIPQALDGR-DVLASAPTGTGKTAAFVIPAL 62
Score = 108 (43.1 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LIL PTRELA+QV K T + + + GG+ ++ IL I+VATPG L L
Sbjct: 79 LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRL-L 137
Query: 1417 KRIDL----AKSIEYL 1428
+ ID ++IE+L
Sbjct: 138 EYIDAERFDCRAIEWL 153
Score = 79 (32.9 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1279
D +LHR GRT RA +G+ + L+E+ + P+ ++ ++++V
Sbjct: 328 DVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEV 369
Score = 46 (21.3 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
M++ G P + DR++ TE +QT +FSATL
Sbjct: 161 MLDMGFGPTV----DRLS-TECRWRKQTLLFSATL 190
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 229 (85.7 bits), Expect = 8.9e-38, Sum P(3) = 8.9e-38
Identities = 48/139 (34%), Positives = 87/139 (62%)
Query: 1065 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP---LHASMNQRQRLKNLD 1121
K L + + R++VF + + +RL L L+ + +P + M Q +R +
Sbjct: 234 KVELLKKILTEQAERSIVF---LKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAIS 290
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
RFR+ + +ILLATDVAARG+D+P I HVI++ +PR++++Y+HR GRT RA +G+ + L+
Sbjct: 291 RFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLV 350
Query: 1182 ESDEIPLYIKMFNSLEKKV 1200
E+ + P+ ++ ++++V
Sbjct: 351 EAHDQPMMARVERYIKEEV 369
Score = 226 (84.6 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 47/130 (36%), Positives = 81/130 (62%)
Query: 532 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP---LHASMNQRQRLKNLD 588
K L + + R++VF + + +RL L L+ + +P + M Q +R +
Sbjct: 234 KVELLKKILTEQAERSIVF---LKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAIS 290
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
RFR+ + +ILLATDVAARG+D+P I HVI++ +PR++++Y+HR GRT RA +G+ + L+
Sbjct: 291 RFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLV 350
Query: 649 ESDEIPLKTK 658
E+ + P+ +
Sbjct: 351 EAHDQPMMAR 360
Score = 192 (72.6 bits), Expect = 8.9e-38, Sum P(3) = 8.9e-38
Identities = 49/132 (37%), Positives = 72/132 (54%)
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
+F ++ LIL PTRELA+QV K T + + + GG+ ++ IL
Sbjct: 67 DFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQ 126
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
I+VATPGRL E+I F + I +L++DE DRM++ G P + DR++ TE
Sbjct: 127 DIVVATPGRLLEYIDAERF---DCRAIEWLILDEADRMLDMGFGPTV----DRLS-TECR 178
Query: 988 QPRQTFVFSATL 999
+QT +FSATL
Sbjct: 179 WRKQTLLFSATL 190
Score = 173 (66.0 bits), Expect = 8.4e-36, Sum P(3) = 8.4e-36
Identities = 45/129 (34%), Positives = 69/129 (53%)
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
+F ++ LIL PTRELA+QV K T + + + GG+ ++ IL
Sbjct: 67 DFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQ 126
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
I+VATPGRL E+I F + I +L++DE DRM++ G P + DR++ TE
Sbjct: 127 DIVVATPGRLLEYIDAERF---DCRAIEWLILDEADRMLDMGFGPTV----DRLS-TECR 178
Query: 371 QPRQTMIES 379
+QT++ S
Sbjct: 179 WRKQTLLFS 187
Score = 110 (43.8 bits), Expect = 8.9e-38, Sum P(3) = 8.9e-38
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ A+ + GF PT++Q+ +P AL R D++ +A TG+GKT AF IP L
Sbjct: 14 LLEAIEEMGFSRPTQVQAEAIPQALDGR-DVLASAPTGTGKTAAFVIPAL 62
Score = 110 (43.8 bits), Expect = 8.9e-38, Sum P(3) = 8.9e-38
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ A+ + GF PT++Q+ +P AL R D++ +A TG+GKT AF IP L
Sbjct: 14 LLEAIEEMGFSRPTQVQAEAIPQALDGR-DVLASAPTGTGKTAAFVIPAL 62
Score = 108 (43.1 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LIL PTRELA+QV K T + + + GG+ ++ IL I+VATPG L L
Sbjct: 79 LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRL-L 137
Query: 1417 KRIDL----AKSIEYL 1428
+ ID ++IE+L
Sbjct: 138 EYIDAERFDCRAIEWL 153
Score = 79 (32.9 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1279
D +LHR GRT RA +G+ + L+E+ + P+ ++ ++++V
Sbjct: 328 DVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEV 369
Score = 46 (21.3 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
M++ G P + DR++ TE +QT +FSATL
Sbjct: 161 MLDMGFGPTV----DRLS-TECRWRKQTLLFSATL 190
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 219 (82.2 bits), Expect = 9.5e-38, Sum P(3) = 9.5e-38
Identities = 48/119 (40%), Positives = 71/119 (59%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA+Q+Q G + + CV GG S Q+ L K I++ATPGRL +
Sbjct: 461 LVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLID 520
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
++ G T L ++ YLV+DE DRM++ G P+++ I+ ++ RQT +FSAT
Sbjct: 521 ILESGK---TNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR-----PDRQTLMFSAT 571
Score = 211 (79.3 bits), Expect = 7.0e-37, Sum P(3) = 7.0e-37
Identities = 49/137 (35%), Positives = 77/137 (56%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA+Q+Q G + + CV GG S Q+ L K I++ATPGRL +
Sbjct: 461 LVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLID 520
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ G T L ++ YLV+DE DRM++ G P+++ I+ ++ RQT++ S +
Sbjct: 521 ILESGK---TNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR-----PDRQTLMFSATW 572
Query: 383 PELKNILDRVTMTETSQ 399
P+ L +T+ Q
Sbjct: 573 PKEVQALAHDFLTDHIQ 589
Score = 209 (78.6 bits), Expect = 9.5e-38, Sum P(3) = 9.5e-38
Identities = 53/166 (31%), Positives = 90/166 (54%)
Query: 1059 LCKHDEKDSYLYYFI--LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
+C+ EK + F+ + + +VF + V L ++L + +H + +Q +R
Sbjct: 609 VCQDFEKKERMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPER 668
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
L +F++ I++ATDVA+RGLDI I++V++Y P T E+YIHR GRTARA G+
Sbjct: 669 DFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGV 728
Query: 1177 TLVLIESDEIPL---YIKMFNSLEKKV--DLPDFPIDESVLSLIKK 1217
+ L+ +D L IK+ ++K+ +L + + S S KK
Sbjct: 729 SYSLLTTDNARLANELIKVLTEAKQKIPIELSNLSVTPSTSSNTKK 774
Score = 197 (74.4 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 45/132 (34%), Positives = 75/132 (56%)
Query: 526 LCKHDEKDSYLYYFI--LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+C+ EK + F+ + + +VF + V L ++L + +H + +Q +R
Sbjct: 609 VCQDFEKKERMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPER 668
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L +F++ I++ATDVA+RGLDI I++V++Y P T E+YIHR GRTARA G+
Sbjct: 669 DFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGV 728
Query: 644 TVVLIESDEIPL 655
+ L+ +D L
Sbjct: 729 SYSLLTTDNARL 740
Score = 122 (48.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L+LAPTRELA+Q+Q G + + CV GG S Q+ L K I++ATPG L
Sbjct: 461 LVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRL-- 518
Query: 1417 KRIDLAKS 1424
ID+ +S
Sbjct: 519 --IDILES 524
Score = 121 (47.7 bits), Expect = 9.5e-38, Sum P(3) = 9.5e-38
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
P +++ + GF PT IQS P AL R DI+G A+TGSGKTLAF +P + I
Sbjct: 392 PGYLMKEIIGAGFPNPTPIQSQAWPIALKGR-DIIGLAKTGSGKTLAFLLPSIVHI 446
Score = 121 (47.7 bits), Expect = 9.5e-38, Sum P(3) = 9.5e-38
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
P +++ + GF PT IQS P AL R DI+G A+TGSGKTLAF +P + I
Sbjct: 392 PGYLMKEIIGAGFPNPTPIQSQAWPIALKGR-DIIGLAKTGSGKTLAFLLPSIVHI 446
Score = 82 (33.9 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPL---YIKMFNSL 1275
+D+ K I+Y+ + N + ++HR GRTARA G++ L+ +D L IK+
Sbjct: 693 LDI-KDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVLTEA 751
Query: 1276 EKKV--DLPDFPIDESVLSLIKK 1296
++K+ +L + + S S KK
Sbjct: 752 KQKIPIELSNLSVTPSTSSNTKK 774
Score = 57 (25.1 bits), Expect = 6.2e-21, Sum P(3) = 6.2e-21
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 328 HFHLTELYKINYLVIDETDRMI---ESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
H + L K +VI R+I ESG K L RVT + + M++ G P+
Sbjct: 498 HTQVAALKKGVEIVIATPGRLIDILESG-----KTNLRRVTYLVLDEADR-MLDMGFEPQ 551
Query: 385 LKNILDRVTMTETSQPRQTFVFSAT 409
++ I+ ++ RQT +FSAT
Sbjct: 552 IRKIISQIR-----PDRQTLMFSAT 571
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 232 (86.7 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 52/119 (43%), Positives = 74/119 (62%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ D GK + +K CV GG Q+R L + I +ATPGRL +
Sbjct: 172 LVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLID 231
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F+++G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 232 FLEVGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 282
Score = 229 (85.7 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 52/129 (40%), Positives = 79/129 (61%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ D GK + +K CV GG Q+R L + I +ATPGRL +
Sbjct: 172 LVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLID 231
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F+++G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 232 FLEVGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 283
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 284 PKEVRQLAE 292
Score = 189 (71.6 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 50/158 (31%), Positives = 83/158 (52%)
Query: 490 RTLCEE-IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI----LQHP 544
R L E+ +QD + I + +L+ I + + +C +EKD+ L + +
Sbjct: 288 RQLAEDFLQDYVQINIGAL-ELSANHNILQIVD----VCMENEKDNKLIQLMEEIMAEKE 342
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+T++F + LT+ + + +H +Q +R L FR IL+ATDVA
Sbjct: 343 NKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVA 402
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+G
Sbjct: 403 SRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 440
Score = 187 (70.9 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 1059 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+C +EKD+ L + + +T++F + LT+ + + +H +Q
Sbjct: 320 VCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQP 379
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
+R L FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 380 ERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 439
Query: 1175 G 1175
G
Sbjct: 440 G 440
Score = 129 (50.5 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 29/58 (50%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ D GK + +K CV GG Q+R L + I +ATPG L
Sbjct: 172 LVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRL 229
Score = 125 (49.1 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
P+ ++ L Q+ FK PT IQ+ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 103 PQYVMDVLLQQNFKEPTAIQAQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 157
Score = 125 (49.1 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
P+ ++ L Q+ FK PT IQ+ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 103 PQYVMDVLLQQNFKEPTAIQAQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 157
Score = 60 (26.2 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 1235 NRPDNWLHRSGRTARANNEG 1254
N ++++HR GRTAR+ N+G
Sbjct: 421 NSSEDYVHRIGRTARSTNKG 440
Score = 48 (22.0 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 254 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 282
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 240 (89.5 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 55/168 (32%), Positives = 99/168 (58%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHD---EKDSYLYYFILQ-HP 544
T+ EE++DL +++K+P + + + L + I + + ++++ + + + P
Sbjct: 366 TMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRTFP 425
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
++F + R+ LL ++ LH +++Q QRL+ L RF+D+ IL+ATDVA
Sbjct: 426 DHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATDVA 485
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
ARGLDI G++ VI++ +P T++ Y+HR GRTARA G +V L+ +E
Sbjct: 486 ARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEE 533
Score = 226 (84.6 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 52/149 (34%), Positives = 86/149 (57%)
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P ++F + R+ LL ++ LH +++Q QRL+ L RF+D+ IL+ATDV
Sbjct: 425 PDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATDV 484
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
AARGLDI G++ VI++ +P T++ Y+HR GRTARA G ++ L+ +E + ++ +
Sbjct: 485 AARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA 544
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
+ V P D +L +K +L K +
Sbjct: 545 KTPVKARILPQDV-ILKFREKIENLEKDV 572
Score = 187 (70.9 bits), Expect = 6.9e-21, Sum P(3) = 6.9e-21
Identities = 61/222 (27%), Positives = 102/222 (45%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L PTREL IQV + +++ V VGG+ + Q L P IL+ATPGRL +
Sbjct: 255 LVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPDILIATPGRLID 314
Query: 940 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ FHL+ + L++DE DRM++ ++K I+ R+ S+ RQT +FSAT
Sbjct: 315 HLHNCPSFHLSS---VEVLILDEADRMLDEYFEEQMKEII-RLC----SRHRQTMLFSAT 366
Query: 999 LTHXXXXXXXXXXXX-XXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIG--ITKTLTE 1055
+T D + Q+ + I+ + D + +T+T +
Sbjct: 367 MTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRTFPD 426
Query: 1056 SKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQL 1096
+L +K ++ + +L G R ++S +RL L
Sbjct: 427 HVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEAL 468
Score = 175 (66.7 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 51/148 (34%), Positives = 76/148 (51%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L PTREL IQV + +++ V VGG+ + Q L P IL+ATPGRL +
Sbjct: 255 LVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPDILIATPGRLID 314
Query: 323 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ FHL+ + L++DE DRM++ ++K I+ R+ S+ RQTM+ S
Sbjct: 315 HLHNCPSFHLSS---VEVLILDEADRMLDEYFEEQMKEII-RLC----SRHRQTMLFSAT 366
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSAT 409
E L V++ P + FV S T
Sbjct: 367 MTEEVKDLASVSL---KNPTRIFVNSNT 391
Score = 131 (51.2 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 41/146 (28%), Positives = 66/146 (45%)
Query: 85 QVEVSELSANTNDPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTYTSANK-ELLEVDTSNN 143
Q +V + +A T D + + E+ +E +T A+ ++ E S
Sbjct: 101 QAKVKDGNAETEDNQSEKRECEDFGREEEEDNESQYSLDDETIFTKADTLKVKERKRSKK 160
Query: 144 ------EDMFVQMAEW---VKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
E F +E+ + F N+ +++A+ GFK PT IQ +P LL KD
Sbjct: 161 GGQKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLG-KD 219
Query: 192 IVGAAETGSGKTLAFGIPILTGIVNK 217
I A TG+GKT AF +P+L ++ K
Sbjct: 220 ICACAATGTGKTAAFILPVLERLIYK 245
Score = 131 (51.2 bits), Expect = 6.9e-21, Sum P(3) = 6.9e-21
Identities = 41/146 (28%), Positives = 66/146 (45%)
Query: 702 QVEVSELSANTNDPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANK-ELLEVDTSNN 760
Q +V + +A T D + + E+ +E +T A+ ++ E S
Sbjct: 101 QAKVKDGNAETEDNQSEKRECEDFGREEEEDNESQYSLDDETIFTKADTLKVKERKRSKK 160
Query: 761 ------EDMFVQMAEW---VKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
E F +E+ + F N+ +++A+ GFK PT IQ +P LL KD
Sbjct: 161 GGQKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLG-KD 219
Query: 809 IVGAAETGSGKTLAFGIPILTGIVNK 834
I A TG+GKT AF +P+L ++ K
Sbjct: 220 ICACAATGTGKTAAFILPVLERLIYK 245
Score = 115 (45.5 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 37/143 (25%), Positives = 66/143 (46%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
LI++ R + L+L PTREL IQV + +++ V VGG+ + Q L
Sbjct: 242 LIYKPRQAPIT-RVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRS 300
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIK-KNRPDNWLEKAAKDMXXXXXXENLIQPK 1461
P IL+ATPG L + + S ++ + D L++ ++ + +I+
Sbjct: 301 GPDILIATPGRL-IDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQM-----KEIIRLC 354
Query: 1462 ANSRENALMSKALVSKRKELQSL 1484
+ R+ L S + + K+L S+
Sbjct: 355 SRHRQTMLFSATMTEEVKDLASV 377
Score = 69 (29.3 bits), Expect = 6.9e-21, Sum P(3) = 6.9e-21
Identities = 25/102 (24%), Positives = 50/102 (49%)
Query: 1204 DFPIDESVLSLIKKR-IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIES 1262
D ID V + + R +D+ + ++ + + N +++HR GRTARA G ++ L+
Sbjct: 473 DEQIDILVATDVAARGLDI-EGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGE 531
Query: 1263 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1304
+E + ++ + + V P D +L +K +L K +
Sbjct: 532 EERKMLKEIVKAAKTPVKARILPQDV-ILKFREKIENLEKDV 572
Score = 45 (20.9 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 398 SQPRQTFVFSATLT 411
S+ RQT +FSAT+T
Sbjct: 355 SRHRQTMLFSATMT 368
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 209 (78.6 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 57/134 (42%), Positives = 76/134 (56%)
Query: 868 EFVKKT--RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
E +K T + ALIL+P RELA+Q + D K T ++ +VGG+S E+Q +L+
Sbjct: 129 EHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSG 188
Query: 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
P I+VATPGR F+ L EL I Y+V DE DR+ E G +L IL +
Sbjct: 189 KPDIVVATPGR---FLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALP--- 242
Query: 986 TSQPRQTFVFSATL 999
TS RQT +FSATL
Sbjct: 243 TS--RQTLLFSATL 254
Score = 195 (73.7 bits), Expect = 4.4e-36, Sum P(4) = 4.4e-36
Identities = 54/135 (40%), Positives = 74/135 (54%)
Query: 251 EFVKKT--RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
E +K T + ALIL+P RELA+Q + D K T ++ +VGG+S E+Q +L+
Sbjct: 129 EHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSG 188
Query: 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
P I+VATPGR F+ L EL I Y+V DE DR+ E G +L IL +
Sbjct: 189 KPDIVVATPGR---FLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALP--- 242
Query: 369 TSQPRQTMIESGHFP 383
TS RQT++ S P
Sbjct: 243 TS--RQTLLFSATLP 255
Score = 193 (73.0 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 39/109 (35%), Positives = 66/109 (60%)
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P TLVF + V+ +++LL S ++ S++Q RL ++ FR ++L+ TDV
Sbjct: 346 PDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDV 405
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
A+RG+DIP + +VI+Y P ++++HR GRTARA G L+ +++
Sbjct: 406 ASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAED 454
Score = 193 (73.0 bits), Expect = 4.4e-36, Sum P(4) = 4.4e-36
Identities = 39/109 (35%), Positives = 66/109 (60%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
P TLVF + V+ +++LL S ++ S++Q RL ++ FR ++L+ TDV
Sbjct: 346 PDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDV 405
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
A+RG+DIP + +VI+Y P ++++HR GRTARA G L+ +++
Sbjct: 406 ASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAED 454
Score = 150 (57.9 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
+T++RA+++KGFK PT IQ +P LL +D+VG A TGSGKT AF IP++ + + L
Sbjct: 78 QTLLRAIFKKGFKAPTPIQRKTIP-LLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLA 136
Query: 220 N 220
N
Sbjct: 137 N 137
Score = 150 (57.9 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
+T++RA+++KGFK PT IQ +P LL +D+VG A TGSGKT AF IP++ + + L
Sbjct: 78 QTLLRAIFKKGFKAPTPIQRKTIP-LLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLA 136
Query: 837 N 837
N
Sbjct: 137 N 137
Score = 140 (54.3 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 35/77 (45%), Positives = 51/77 (66%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA-L 1414
ALIL+P RELA+Q + D K T ++ +VGG+S E+Q +L+ P I+VATPG L
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL 201
Query: 1415 SLK---RIDLAKSIEYL 1428
LK +++L+ SIEY+
Sbjct: 202 HLKVEMKLELS-SIEYV 217
Score = 62 (26.9 bits), Expect = 5.6e-24, Sum P(4) = 5.6e-24
Identities = 19/80 (23%), Positives = 41/80 (51%)
Query: 1191 KMFNSLEKKV---DLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN---RPDNWLHRS 1244
K++ SL+++ ++ +F + ++ L ++ I L + I + +P ++HR
Sbjct: 375 KIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRV 434
Query: 1245 GRTARANNEGLTLVLIESDE 1264
GRTARA G L+ +++
Sbjct: 435 GRTARAGRTGWAYSLVRAED 454
Score = 44 (20.5 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 1211 VLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHR 1243
V S +K +++ K+ E E ++ KN + HR
Sbjct: 816 VNSELKSAVEIRKARELKEKRLAKNNRPSKKHR 848
Score = 43 (20.2 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
+ E G +L IL + TS RQT +FSATL
Sbjct: 225 LFEMGFAAQLTEILHALP---TS--RQTLLFSATL 254
Score = 42 (19.8 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 1290 VLSLIKKRIDLAKSIEYLESKI-KKNRP 1316
V S +K +++ K+ E E ++ K NRP
Sbjct: 816 VNSELKSAVEIRKARELKEKRLAKNNRP 843
Score = 38 (18.4 bits), Expect = 5.4e-37, Sum P(4) = 5.4e-37
Identities = 20/99 (20%), Positives = 36/99 (36%)
Query: 1395 KQLRILNKCPHILVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXX 1454
KQ+ +L P LVA + + ++ L + + + +A
Sbjct: 486 KQI-VLGSLPQELVAELLEWVQRIVSRDVELQQLSNVAARGEKLYFRTRATCSAESAKRA 544
Query: 1455 ENLIQPKANSRENALMSKALVSKRKELQSLLGKSVQSYQ 1493
+ L+ K S N L V + +E + L V SY+
Sbjct: 545 KELVDSKGWSSNNPLFGDVSVIEAEEKYAELLSKVSSYR 583
Score = 37 (18.1 bits), Expect = 6.8e-37, Sum P(4) = 6.8e-37
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 1423 KSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALVSKRK 1479
++ E + + K +P + A D N+ + + E + +SK+K
Sbjct: 600 EAAEIMRKRRNKVKPKGIKSEVASDKITDSSPGNMSEASESELEEVFKNPKELSKKK 656
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 223 (83.6 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 48/119 (40%), Positives = 75/119 (63%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LILAPTRELA+Q+Q I GK + ++ CV GG+ Q+R L++ + +ATPGRL +
Sbjct: 217 LILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLID 276
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
++ G T L ++ YLV+DE DRM++ G P+++ I+ ++ RQT ++SAT
Sbjct: 277 MLEAGR---TNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR-----PDRQTCMWSAT 327
Score = 218 (81.8 bits), Expect = 4.6e-37, Sum P(3) = 4.6e-37
Identities = 47/122 (38%), Positives = 75/122 (61%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LILAPTRELA+Q+Q I GK + ++ CV GG+ Q+R L++ + +ATPGRL +
Sbjct: 217 LILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLID 276
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ G T L ++ YLV+DE DRM++ G P+++ I+ ++ RQT + S +
Sbjct: 277 MLEAGR---TNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR-----PDRQTCMWSATW 328
Query: 383 PE 384
P+
Sbjct: 329 PK 330
Score = 193 (73.0 bits), Expect = 4.6e-37, Sum P(3) = 4.6e-37
Identities = 45/147 (30%), Positives = 81/147 (55%)
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYF--ILQHPG-RTLVFCNSISSVKRLTQLL 564
+DL+ IT+ + +++ + +++D + + I+++ G + LVF + +T+ L
Sbjct: 351 MDLSANHRITQIV---EVISEFEKRDRMIKHLEKIMENRGNKCLVFTGTKRIADEITRFL 407
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L +H Q++R L+ F+ + I++ATDVA+RG+D+ I HVI+Y P
Sbjct: 408 RQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNN 467
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESD 651
SE Y+HR GRT RA +G + +D
Sbjct: 468 SEDYVHRIGRTGRAGAKGTAITFFTTD 494
Score = 192 (72.6 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 45/147 (30%), Positives = 81/147 (55%)
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYF--ILQHPG-RTLVFCNSISSVKRLTQLL 1097
+DL+ IT+ + +++ + +++D + + I+++ G + LVF + +T+ L
Sbjct: 351 MDLSANHRITQIV---EVISEFEKRDRMIKHLEKIMENRGNKCLVFTGTKRIADEITRFL 407
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
L +H Q++R L+ F+ + I++ATDVA+RG+D+ I HVI+Y P
Sbjct: 408 RQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNN 467
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESD 1184
SE Y+HR GRT RA +G + +D
Sbjct: 468 SEDYVHRIGRTGRAGAKGTAITFFTTD 494
Score = 130 (50.8 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LILAPTRELA+Q+Q I GK + ++ CV GG+ Q+R L++ + +ATPG L
Sbjct: 217 LILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRL 274
Score = 124 (48.7 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
P+ ++ + +GF+ PT IQS P AL R D+VG AETGSGKTL++ +P + I
Sbjct: 148 PQYVLSEVKAQGFEKPTAIQSQGWPMALSGR-DVVGIAETGSGKTLSYCLPAIVHI 202
Score = 124 (48.7 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
P+ ++ + +GF+ PT IQS P AL R D+VG AETGSGKTL++ +P + I
Sbjct: 148 PQYVLSEVKAQGFEKPTAIQSQGWPMALSGR-DVVGIAETGSGKTLSYCLPAIVHI 202
Score = 59 (25.8 bits), Expect = 9.6e-24, Sum P(3) = 9.6e-24
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESD 1263
N ++++HR GRT RA +G + +D
Sbjct: 466 NNSEDYVHRIGRTGRAGAKGTAITFFTTD 494
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 228 (85.3 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 58/158 (36%), Positives = 91/158 (57%)
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
T +FCN+ +++ L S L LH + QR R + L RF +++ SIL+ATDVAAR
Sbjct: 252 TAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAAR 311
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDI ++ VI+YH+ R SE+++HR GRT RA + G+ L SD+ + + +
Sbjct: 312 GLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLF-SDKESYKVGLLEDYLEA 370
Query: 1200 VDLPDFPIDE-SVLSLIKKRIDLAKSIEYLESKIKKNR 1236
V P+ P+ +VLS + + +A +I+ K +K R
Sbjct: 371 VITPE-PLPSLAVLSNERPQAKMA-TIQIDGGKKQKVR 406
Score = 225 (84.3 bits), Expect = 4.4e-37, Sum P(3) = 4.4e-37
Identities = 46/106 (43%), Positives = 66/106 (62%)
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
T +FCN+ +++ L S L LH + QR R + L RF +++ SIL+ATDVAAR
Sbjct: 252 TAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAAR 311
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
GLDI ++ VI+YH+ R SE+++HR GRT RA + G+ L E
Sbjct: 312 GLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKE 357
Score = 186 (70.5 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 55/147 (37%), Positives = 80/147 (54%)
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
VKK R + ++++ PTRELA QV + L G + +K+ + GG Q+ L
Sbjct: 74 VKKFR--IQSMVICPTRELADQVAKELRKLARGIHN-IKILTLCGGTPFGPQIGSLEHGA 130
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
H++V TPGRL E + G L L N LV+DE DRM+E G L NI+ R T
Sbjct: 131 HVIVGTPGRLEEHVIKGTLQLDNL---NLLVLDEADRMLEMGFQAALDNIVGR-----TP 182
Query: 371 QPRQTMIESGHFPE-LKNILDRVTMTE 396
RQT++ S FP+ +K+I + + MT+
Sbjct: 183 LDRQTLLFSATFPDQIKSISESI-MTD 208
Score = 180 (68.4 bits), Expect = 8.1e-37, Sum P(3) = 8.1e-37
Identities = 52/131 (39%), Positives = 70/131 (53%)
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
VKK R + ++++ PTRELA QV + L G + +K+ + GG Q+ L
Sbjct: 74 VKKFR--IQSMVICPTRELADQVAKELRKLARGIHN-IKILTLCGGTPFGPQIGSLEHGA 130
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
H++V TPGRL E + G L L N LV+DE DRM+E G L NI+ R T
Sbjct: 131 HVIVGTPGRLEEHVIKGTLQLDNL---NLLVLDEADRMLEMGFQAALDNIVGR-----TP 182
Query: 988 QPRQTFVFSAT 998
RQT +FSAT
Sbjct: 183 LDRQTLLFSAT 193
Score = 118 (46.6 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
++ + +++ L G++ T IQ+ +P LL KD++G A+TGSGKT AFG+ +L N
Sbjct: 16 SLKQDLVKNLSSLGYEQMTPIQAKTLPE-LLKGKDVIGEAKTGSGKTAAFGLALL----N 70
Query: 217 KLE 219
KLE
Sbjct: 71 KLE 73
Score = 118 (46.6 bits), Expect = 8.1e-37, Sum P(3) = 8.1e-37
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
++ + +++ L G++ T IQ+ +P LL KD++G A+TGSGKT AFG+ +L N
Sbjct: 16 SLKQDLVKNLSSLGYEQMTPIQAKTLPE-LLKGKDVIGEAKTGSGKTAAFGLALL----N 70
Query: 834 KLE 836
KLE
Sbjct: 71 KLE 73
Score = 89 (36.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 33/138 (23%), Positives = 60/138 (43%)
Query: 1351 RYSWDALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 1408
++ ++++ PTRELA QV + L G + +K+ + GG Q+ L H++V
Sbjct: 76 KFRIQSMVICPTRELADQVAKELRKLARGIHN-IKILTLCGGTPFGPQIGSLEHGAHVIV 134
Query: 1409 ATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENA 1468
TPG L I ++ L + + D LE M +N++ R+
Sbjct: 135 GTPGRLEEHVIKGTLQLDNLNLLVL-DEADRMLE-----MGFQAALDNIVGRTPLDRQTL 188
Query: 1469 LMSKALVSKRKEL-QSLL 1485
L S + K + +S++
Sbjct: 189 LFSATFPDQIKSISESIM 206
Score = 53 (23.7 bits), Expect = 1.6e-18, Sum P(4) = 1.6e-18
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 1241 LHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE-SVLSLIKKRID 1299
+HR GRT RA + G+ L SD+ + + + V P+ P+ +VLS + +
Sbjct: 334 VHRIGRTGRAGSTGIAYSLF-SDKESYKVGLLEDYLEAVITPE-PLPSLAVLSNERPQAK 391
Query: 1300 LAKSIEYLESKIKKNR 1315
+A +I+ K +K R
Sbjct: 392 MA-TIQIDGGKKQKVR 406
Score = 48 (22.0 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M+E G L NI+ R T RQT +FSAT
Sbjct: 165 MLEMGFQAALDNIVGR-----TPLDRQTLLFSAT 193
Score = 40 (19.1 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 1397 LRILNKCPHILVATPGA---LSLKRIDL 1421
LR NK ILVAT A L + +DL
Sbjct: 293 LRFANKSASILVATDVAARGLDIDSLDL 320
Score = 37 (18.1 bits), Expect = 1.6e-18, Sum P(4) = 1.6e-18
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 920 LRILNKCPHILVAT 933
LR NK ILVAT
Sbjct: 293 LRFANKSASILVAT 306
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 228 (85.3 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 58/158 (36%), Positives = 91/158 (57%)
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
T +FCN+ +++ L S L LH + QR R + L RF +++ SIL+ATDVAAR
Sbjct: 252 TAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAAR 311
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDI ++ VI+YH+ R SE+++HR GRT RA + G+ L SD+ + + +
Sbjct: 312 GLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLF-SDKESYKVGLLEDYLEA 370
Query: 1200 VDLPDFPIDE-SVLSLIKKRIDLAKSIEYLESKIKKNR 1236
V P+ P+ +VLS + + +A +I+ K +K R
Sbjct: 371 VITPE-PLPSLAVLSNERPQAKMA-TIQIDGGKKQKVR 406
Score = 225 (84.3 bits), Expect = 4.4e-37, Sum P(3) = 4.4e-37
Identities = 46/106 (43%), Positives = 66/106 (62%)
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
T +FCN+ +++ L S L LH + QR R + L RF +++ SIL+ATDVAAR
Sbjct: 252 TAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAAR 311
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
GLDI ++ VI+YH+ R SE+++HR GRT RA + G+ L E
Sbjct: 312 GLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKE 357
Score = 186 (70.5 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 55/147 (37%), Positives = 80/147 (54%)
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
VKK R + ++++ PTRELA QV + L G + +K+ + GG Q+ L
Sbjct: 74 VKKFR--IQSMVICPTRELADQVAKELRKLARGIHN-IKILTLCGGTPFGPQIGSLEHGA 130
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
H++V TPGRL E + G L L N LV+DE DRM+E G L NI+ R T
Sbjct: 131 HVIVGTPGRLEEHVIKGTLQLDNL---NLLVLDEADRMLEMGFQAALDNIVGR-----TP 182
Query: 371 QPRQTMIESGHFPE-LKNILDRVTMTE 396
RQT++ S FP+ +K+I + + MT+
Sbjct: 183 LDRQTLLFSATFPDQIKSISESI-MTD 208
Score = 180 (68.4 bits), Expect = 8.1e-37, Sum P(3) = 8.1e-37
Identities = 52/131 (39%), Positives = 70/131 (53%)
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
VKK R + ++++ PTRELA QV + L G + +K+ + GG Q+ L
Sbjct: 74 VKKFR--IQSMVICPTRELADQVAKELRKLARGIHN-IKILTLCGGTPFGPQIGSLEHGA 130
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
H++V TPGRL E + G L L N LV+DE DRM+E G L NI+ R T
Sbjct: 131 HVIVGTPGRLEEHVIKGTLQLDNL---NLLVLDEADRMLEMGFQAALDNIVGR-----TP 182
Query: 988 QPRQTFVFSAT 998
RQT +FSAT
Sbjct: 183 LDRQTLLFSAT 193
Score = 118 (46.6 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
++ + +++ L G++ T IQ+ +P LL KD++G A+TGSGKT AFG+ +L N
Sbjct: 16 SLKQDLVKNLSSLGYEQMTPIQAKTLPE-LLKGKDVIGEAKTGSGKTAAFGLALL----N 70
Query: 217 KLE 219
KLE
Sbjct: 71 KLE 73
Score = 118 (46.6 bits), Expect = 8.1e-37, Sum P(3) = 8.1e-37
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
++ + +++ L G++ T IQ+ +P LL KD++G A+TGSGKT AFG+ +L N
Sbjct: 16 SLKQDLVKNLSSLGYEQMTPIQAKTLPE-LLKGKDVIGEAKTGSGKTAAFGLALL----N 70
Query: 834 KLE 836
KLE
Sbjct: 71 KLE 73
Score = 89 (36.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 33/138 (23%), Positives = 60/138 (43%)
Query: 1351 RYSWDALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 1408
++ ++++ PTRELA QV + L G + +K+ + GG Q+ L H++V
Sbjct: 76 KFRIQSMVICPTRELADQVAKELRKLARGIHN-IKILTLCGGTPFGPQIGSLEHGAHVIV 134
Query: 1409 ATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENA 1468
TPG L I ++ L + + D LE M +N++ R+
Sbjct: 135 GTPGRLEEHVIKGTLQLDNLNLLVL-DEADRMLE-----MGFQAALDNIVGRTPLDRQTL 188
Query: 1469 LMSKALVSKRKEL-QSLL 1485
L S + K + +S++
Sbjct: 189 LFSATFPDQIKSISESIM 206
Score = 53 (23.7 bits), Expect = 1.6e-18, Sum P(4) = 1.6e-18
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 1241 LHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE-SVLSLIKKRID 1299
+HR GRT RA + G+ L SD+ + + + V P+ P+ +VLS + +
Sbjct: 334 VHRIGRTGRAGSTGIAYSLF-SDKESYKVGLLEDYLEAVITPE-PLPSLAVLSNERPQAK 391
Query: 1300 LAKSIEYLESKIKKNR 1315
+A +I+ K +K R
Sbjct: 392 MA-TIQIDGGKKQKVR 406
Score = 48 (22.0 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M+E G L NI+ R T RQT +FSAT
Sbjct: 165 MLEMGFQAALDNIVGR-----TPLDRQTLLFSAT 193
Score = 40 (19.1 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 1397 LRILNKCPHILVATPGA---LSLKRIDL 1421
LR NK ILVAT A L + +DL
Sbjct: 293 LRFANKSASILVATDVAARGLDIDSLDL 320
Score = 37 (18.1 bits), Expect = 1.6e-18, Sum P(4) = 1.6e-18
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 920 LRILNKCPHILVAT 933
LR NK ILVAT
Sbjct: 293 LRFANKSASILVAT 306
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 230 (86.0 bits), Expect = 2.3e-37, Sum P(3) = 2.3e-37
Identities = 47/119 (39%), Positives = 77/119 (64%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA+Q+Q G + ++ CV GG+ +Q+R L++ I++ATPGRL +
Sbjct: 190 LVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLID 249
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+++G T L ++ YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 250 MLEIGK---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 300
Score = 229 (85.7 bits), Expect = 3.0e-37, Sum P(3) = 3.0e-37
Identities = 48/127 (37%), Positives = 81/127 (63%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA+Q+Q G + ++ CV GG+ +Q+R L++ I++ATPGRL +
Sbjct: 190 LVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLID 249
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
+++G T L ++ YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 250 MLEIGK---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 301
Query: 383 P-ELKNI 388
P E+K +
Sbjct: 302 PKEVKQL 308
Score = 197 (74.4 bits), Expect = 2.3e-37, Sum P(3) = 2.3e-37
Identities = 52/176 (29%), Positives = 87/176 (49%)
Query: 1029 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 1088
L D + ++ + +L+ IT+ + K D + YL + +TL+F ++
Sbjct: 313 LNDPIQVQVGSL-ELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKR 371
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
+T+ L L +H +QR+R L FR+ + I++ATDVAARG+D+ GI +
Sbjct: 372 MCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINY 431
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLP 1203
VI+Y +P E Y+HR GRT RA G + L K+ + + E ++P
Sbjct: 432 VINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIP 487
Score = 194 (73.4 bits), Expect = 6.2e-37, Sum P(3) = 6.2e-37
Identities = 46/138 (33%), Positives = 73/138 (52%)
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
++L+ IT+ + K D + YL + +TL+F ++ +T+ L
Sbjct: 324 LELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLRED 383
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
L +H +QR+R L FR+ + I++ATDVAARG+D+ GI +VI+Y +P E
Sbjct: 384 GWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIED 443
Query: 628 YIHRSGRTARANNEGLTV 645
Y+HR GRT RA G +
Sbjct: 444 YVHRIGRTGRAGATGTAI 461
Score = 131 (51.2 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L+LAPTRELA+Q+Q G + ++ CV GG+ +Q+R L++ I++ATPG L +
Sbjct: 190 LVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRL-I 248
Query: 1417 KRIDLAKS 1424
+++ K+
Sbjct: 249 DMLEIGKT 256
Score = 109 (43.4 bits), Expect = 2.3e-37, Sum P(3) = 2.3e-37
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
T + D+ + + + P+ ++ + +GF PT IQ P AL R D+VG A TG
Sbjct: 102 TISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGR-DMVGIAATG 160
Query: 200 SGKTLAFGIPILTGIVN 216
SGKTL++ +P GIV+
Sbjct: 161 SGKTLSYCLP---GIVH 174
Score = 109 (43.4 bits), Expect = 2.3e-37, Sum P(3) = 2.3e-37
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
T + D+ + + + P+ ++ + +GF PT IQ P AL R D+VG A TG
Sbjct: 102 TISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGR-DMVGIAATG 160
Query: 817 SGKTLAFGIPILTGIVN 833
SGKTL++ +P GIV+
Sbjct: 161 SGKTLSYCLP---GIVH 174
Score = 56 (24.8 bits), Expect = 9.3e-23, Sum P(3) = 9.3e-23
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EK 1277
ID+ K I Y+ + ++++HR GRT RA G + L K+ + + E
Sbjct: 424 IDV-KGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREA 482
Query: 1278 KVDLP 1282
++P
Sbjct: 483 NQNIP 487
Score = 55 (24.4 bits), Expect = 5.5e-19, Sum P(3) = 5.5e-19
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
+ +L + + +VI R+I+ K L RVT + + M++ G P+++ I+D
Sbjct: 230 IRDLSRGSEIVIATPGRLIDMLEIG--KTNLKRVTYLVLDEADR-MLDMGFEPQIRKIVD 286
Query: 391 RVTMTETSQPRQTFVFSAT 409
++ RQT ++SAT
Sbjct: 287 QIR-----PDRQTLMWSAT 300
Score = 42 (19.8 bits), Expect = 2.6e-21, Sum P(3) = 2.6e-21
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 1285 PIDESVLSL-IKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKD 1326
PI V SL + ++ + +E + K++R + +LE A++D
Sbjct: 316 PIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQD 358
Score = 40 (19.1 bits), Expect = 4.1e-21, Sum P(3) = 4.1e-21
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 1412 GALSLKRI-DLAKSIEYLESKIKKNRPDNWLEKAAKD 1447
G+L L ++ + +E + K++R + +LE A++D
Sbjct: 322 GSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQD 358
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 211 (79.3 bits), Expect = 3.3e-37, Sum P(3) = 3.3e-37
Identities = 48/122 (39%), Positives = 77/122 (63%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L L ++PTRELA+Q+ +++++ + V V GG+S + Q+R + K +++VATPGR
Sbjct: 224 LSVLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKI-KTANVVVATPGR 282
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + I G +L K+NYLV+DE DRM+E G ++K I+ + +E RQT +F+
Sbjct: 283 LVDLINDGAINLG---KVNYLVLDEADRMLEKGFEEDIKTIISNTSNSE----RQTLMFT 335
Query: 997 AT 998
AT
Sbjct: 336 AT 337
Score = 203 (76.5 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 55/170 (32%), Positives = 90/170 (52%)
Query: 494 EEIQDLLN--IKSP-KI-VDLTEKIGITKTLTES-KILCKHDEKDSYLYYFILQH----- 543
+E+++L N + SP K+ V +++ K +T+ +++ K D K+ L + ++
Sbjct: 340 KEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVINKFD-KEKKLIQLLRKYNANES 398
Query: 544 -PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 602
+ L+F R+ L + S +H ++Q+QR L F+ +++LLATD
Sbjct: 399 SDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATD 458
Query: 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
VAARGLDIP ++ VI+ P T E Y+HR GRT RA +G L DE
Sbjct: 459 VAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDE 508
Score = 202 (76.2 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 46/125 (36%), Positives = 78/125 (62%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L L ++PTRELA+Q+ +++++ + V V GG+S + Q+R + K +++VATPGR
Sbjct: 224 LSVLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKI-KTANVVVATPGR 282
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + I G +L K+NYLV+DE DRM+E G ++K I+ + +E RQT++ +
Sbjct: 283 LVDLINDGAINLG---KVNYLVLDEADRMLEKGFEEDIKTIISNTSNSE----RQTLMFT 335
Query: 380 GHFPE 384
+P+
Sbjct: 336 ATWPK 340
Score = 200 (75.5 bits), Expect = 3.3e-37, Sum P(3) = 3.3e-37
Identities = 55/170 (32%), Positives = 89/170 (52%)
Query: 1027 KRLQDLLN--IKSP-KI-VDLTEKIGITKTLTES-KILCKHDEKDSYLYYFILQH----- 1076
K +++L N + SP K+ V +++ K +T+ +++ K D K+ L + ++
Sbjct: 340 KEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVINKFD-KEKKLIQLLRKYNANES 398
Query: 1077 -PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
+ L+F R+ L + S +H ++Q+QR L F+ +++LLATD
Sbjct: 399 SDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATD 458
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
VAARGLDIP ++ VI+ P T E Y+HR GRT RA +G L DE
Sbjct: 459 VAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDE 508
Score = 126 (49.4 bits), Expect = 3.3e-37, Sum P(3) = 3.3e-37
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F PT IQS+ P LL+ KD++G AETGSGKT AFG+P + I+
Sbjct: 173 FDKPTPIQSVSWPF-LLSGKDVIGVAETGSGKTFAFGVPAINNII 216
Score = 126 (49.4 bits), Expect = 3.3e-37, Sum P(3) = 3.3e-37
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F PT IQS+ P LL+ KD++G AETGSGKT AFG+P + I+
Sbjct: 173 FDKPTPIQSVSWPF-LLSGKDVIGVAETGSGKTFAFGVPAINNII 216
Score = 115 (45.5 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 41/139 (29%), Positives = 71/139 (51%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL-- 1414
L ++PTRELA+Q+ +++++ + V V GG+S + Q+R + K +++VATPG L
Sbjct: 227 LCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKI-KTANVVVATPGRLVD 285
Query: 1415 --SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSK 1472
+ I+L K + YL + D LEK ++ + +I +NS LM
Sbjct: 286 LINDGAINLGK-VNYLVL----DEADRMLEKGFEE-----DIKTIISNTSNSERQTLMFT 335
Query: 1473 ALVSKRKELQSLLGKSVQS 1491
A + KE++ L + S
Sbjct: 336 A--TWPKEVRELANNFMNS 352
Score = 57 (25.1 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDE 1264
++++HR GRT RA +G L DE
Sbjct: 482 EDYVHRIGRTGRAGAKGTAHTLFTEDE 508
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 221 (82.9 bits), Expect = 3.7e-37, Sum P(3) = 3.7e-37
Identities = 70/238 (29%), Positives = 117/238 (49%)
Query: 1024 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-TLV 1082
P I+ L + + +P + + + + +T+ K + L + I ++ + LV
Sbjct: 197 PEIRALAKGM-VNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTHLIKENNWQQVLV 255
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F + +LT+ L + +H + +Q R K L F+D + IL+ATD+AARG+D
Sbjct: 256 FTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIAARGID 315
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLY--IK--MFNSLEK 1198
I + V+++ +P E Y+HR GRTARA N G L L+ +DE+ L I+ + +E+
Sbjct: 316 IDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGIEHVIQQHIER 375
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWL-HRSGRTARANNEG 1254
KV P +E S + K + K + + K R ++ RSGR A NN G
Sbjct: 376 KVIEKFIPANELGESRVIKPLKQGKPPKSAKPHGAGKGRVEHKDGQRSGRNANGNNAG 433
Score = 201 (75.8 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 51/168 (30%), Positives = 87/168 (51%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR-T 547
T EI+ L + +P + + + + +T+ K + L + I ++ +
Sbjct: 194 TFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTHLIKENNWQQV 253
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + +LT+ L + +H + +Q R K L F+D + IL+ATD+AARG
Sbjct: 254 LVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIAARG 313
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+DI + V+++ +P E Y+HR GRTARA N G + L+ +DE+ L
Sbjct: 314 IDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDL 361
Score = 183 (69.5 bits), Expect = 3.7e-37, Sum P(3) = 3.7e-37
Identities = 46/130 (35%), Positives = 69/130 (53%)
Query: 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
K + N + ALIL PTRELA Q+ I GKY + V GG+ Q+ L + +L
Sbjct: 75 KVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVDVL 134
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
VATPGRL + L + + ++ ++DE DRM++ G ++K + MT + R
Sbjct: 135 VATPGRL---LDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKL-----MTALPKDR 186
Query: 991 QTFVFSATLT 1000
Q +FSAT +
Sbjct: 187 QNLLFSATFS 196
Score = 178 (67.7 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 46/134 (34%), Positives = 71/134 (52%)
Query: 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
K + N + ALIL PTRELA Q+ I GKY + V GG+ Q+ L + +L
Sbjct: 75 KVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVDVL 134
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
VATPGRL + L + + ++ ++DE DRM++ G ++K + MT + R
Sbjct: 135 VATPGRL---LDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKL-----MTALPKDR 186
Query: 374 QTMIESGHF-PELK 386
Q ++ S F PE++
Sbjct: 187 QNLLFSATFSPEIR 200
Score = 126 (49.4 bits), Expect = 3.7e-37, Sum P(3) = 3.7e-37
Identities = 21/60 (35%), Positives = 43/60 (71%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + E +++A+ KG++TP+ IQ+ +P A+++ +D++ AA+TG+GKT F +P+L
Sbjct: 7 KFTDLGLSEALLKAVRDKGYETPSPIQAQAIP-AVISGRDVMAAAQTGTGKTAGFTLPLL 65
Score = 126 (49.4 bits), Expect = 3.7e-37, Sum P(3) = 3.7e-37
Identities = 21/60 (35%), Positives = 43/60 (71%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + E +++A+ KG++TP+ IQ+ +P A+++ +D++ AA+TG+GKT F +P+L
Sbjct: 7 KFTDLGLSEALLKAVRDKGYETPSPIQAQAIP-AVISGRDVMAAAQTGTGKTAGFTLPLL 65
Score = 117 (46.2 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 43/128 (33%), Positives = 63/128 (49%)
Query: 1347 SRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 1406
S N+R ALIL PTRELA Q+ I GKY + V GG+ Q+ L + +
Sbjct: 78 SNNVR----ALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVDV 133
Query: 1407 LVATPGALSLKRIDLAKSIEYLESKIKKNRPDNW-LEKAAK--DMXXXXXXENLIQPKAN 1463
LVATPG L +DL Y + +K ++ + + L++A + DM + L+
Sbjct: 134 LVATPGRL----LDL-----YNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPK 184
Query: 1464 SRENALMS 1471
R+N L S
Sbjct: 185 DRQNLLFS 192
Score = 87 (35.7 bits), Expect = 7.1e-23, Sum P(3) = 7.1e-23
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPL 1267
N P++++HR GRTARA N G L L+ +DE+ L
Sbjct: 329 NVPEDYVHRIGRTARAGNTGQALSLVCADELDL 361
Score = 49 (22.3 bits), Expect = 1.9e-18, Sum P(4) = 1.9e-18
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 603 VAARGLDIP-GIEHVIHYHVPR 623
V A LD+ GIEHVI H+ R
Sbjct: 354 VCADELDLLWGIEHVIQQHIER 375
Score = 43 (20.2 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
M++ G ++K + MT + RQ +FSAT +
Sbjct: 166 MLDMGFIRDIKKL-----MTALPKDRQNLLFSATFS 196
Score = 41 (19.5 bits), Expect = 1.9e-18, Sum P(4) = 1.9e-18
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 631 RSGRTARANNEG 642
RSGR A NN G
Sbjct: 422 RSGRNANGNNAG 433
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 230 (86.0 bits), Expect = 6.7e-37, Sum P(3) = 6.7e-37
Identities = 56/173 (32%), Positives = 99/173 (57%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILC---KHDEKDSYLYYFILQ-HP 544
T+ EE++DL +++K P + + + L + + K ++++ + + +
Sbjct: 387 TMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAALLTRTFQ 446
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
++F + R+ LL ++ LH +++Q QRL++L RF+D+ IL+ATDVA
Sbjct: 447 DHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVA 506
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI-ESDEIPLK 656
ARGLDI G++ VI++ +P T + Y+HR GRTARA G +V L+ E++ LK
Sbjct: 507 ARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLK 559
Score = 226 (84.6 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 56/148 (37%), Positives = 86/148 (58%)
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F + R+ LL ++ LH +++Q QRL++L RF+D+ IL+ATDVAARG
Sbjct: 450 MLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARG 509
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
LDI G++ VI++ +P T + Y+HR GRTARA G ++ L+ E KM + KK
Sbjct: 510 LDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETER----KMLKEIVKKA 565
Query: 1201 DLPDFPIDESVL--SLIKKRIDLAKSIE 1226
FP+ V+ +I K DL + +E
Sbjct: 566 K---FPVKARVIPQEVILKFRDLIEKLE 590
Score = 185 (70.2 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 61/224 (27%), Positives = 101/224 (45%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L PTREL IQV ++T + VGG+ + Q L P +L+ATPGRL
Sbjct: 276 LVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAGPDVLIATPGRL-- 333
Query: 940 FIQLGHFHLT---ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
+ H H T EL +I L++DE DRM++ ++K I+ R+ + RQT +FS
Sbjct: 334 ---IDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEII-RMCAYQ----RQTMLFS 385
Query: 997 ATLTHXXXXXXXXXXXX-XXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIG--ITKTL 1053
AT++ D + Q+ + I+ K D + +T+T
Sbjct: 386 ATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAALLTRTF 445
Query: 1054 TESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQL 1096
+ +L +K ++ + +L G + ++S +RL L
Sbjct: 446 QDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESL 489
Score = 180 (68.4 bits), Expect = 6.7e-37, Sum P(3) = 6.7e-37
Identities = 53/150 (35%), Positives = 76/150 (50%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L PTREL IQV ++T + VGG+ + Q L P +L+ATPGRL
Sbjct: 276 LVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAGPDVLIATPGRL-- 333
Query: 323 FIQLGHFHLT---ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
+ H H T EL +I L++DE DRM++ ++K I+ R+ + RQTM+ S
Sbjct: 334 ---IDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEII-RMCAYQ----RQTMLFS 385
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSAT 409
E L V++ QP + FV S T
Sbjct: 386 ATMSEEVKDLASVSL---KQPVRIFVNSNT 412
Score = 130 (50.8 bits), Expect = 6.7e-37, Sum P(3) = 6.7e-37
Identities = 39/144 (27%), Positives = 62/144 (43%)
Query: 81 QNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPS-SXXXXXXXXXXXTYTSANKELLEVD 139
+ + E + A+ ND D+ ++ DE S T K+
Sbjct: 124 EEDDEEEEEDNDADDNDADEVSGGGDDDDDDEDEFSSADEEVLKKADTLREKQKKGKRKM 183
Query: 140 TSNNEDMFVQMAEW---VKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 193
E F +++ + F N+ +++A+ GFK PT IQ +P LL KDI
Sbjct: 184 ADTTEGFFEDASQYDENLTFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLG-KDIC 242
Query: 194 GAAETGSGKTLAFGIPILTGIVNK 217
A TG+GKT AF +P+L ++ K
Sbjct: 243 ACAATGTGKTAAFMLPVLERLIYK 266
Score = 130 (50.8 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 39/144 (27%), Positives = 62/144 (43%)
Query: 698 QNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPH-SXXXXXXXXXXXTYTSANKELLEVD 756
+ + E + A+ ND D+ ++ DE S T K+
Sbjct: 124 EEDDEEEEEDNDADDNDADEVSGGGDDDDDDEDEFSSADEEVLKKADTLREKQKKGKRKM 183
Query: 757 TSNNEDMFVQMAEW---VKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
E F +++ + F N+ +++A+ GFK PT IQ +P LL KDI
Sbjct: 184 ADTTEGFFEDASQYDENLTFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLG-KDIC 242
Query: 811 GAAETGSGKTLAFGIPILTGIVNK 834
A TG+GKT AF +P+L ++ K
Sbjct: 243 ACAATGTGKTAAFMLPVLERLIYK 266
Score = 128 (50.1 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 39/143 (27%), Positives = 68/143 (47%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
LI++ R + + L+L PTREL IQV ++T + VGG+ + Q L
Sbjct: 263 LIYKPRETQVT-RVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRA 321
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIK-KNRPDNWLEKAAKDMXXXXXXENLIQPK 1461
P +L+ATPG L + + S E + +I + D L++ ++ + +I+
Sbjct: 322 GPDVLIATPGRL-IDHLHNTPSFELSQIEILILDEADRMLDEYFEEQM-----KEIIRMC 375
Query: 1462 ANSRENALMSKALVSKRKELQSL 1484
A R+ L S + + K+L S+
Sbjct: 376 AYQRQTMLFSATMSEEVKDLASV 398
Score = 76 (31.8 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 46/182 (25%), Positives = 76/182 (41%)
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR-IDLAKSIEYLESKIKK 1234
L L+ ++ E+ + LE D ID V + + R +D+ + ++ + +
Sbjct: 466 LGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMP 524
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVL--S 1292
N +++HR GRTARA G ++ L+ E KM + KK FP+ V+
Sbjct: 525 NTVKHYVHRVGRTARAGKVGRSVSLVGETER----KMLKEIVKKAK---FPVKARVIPQE 577
Query: 1293 LIKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPNQLLIFESRNLRY 1352
+I K DL IE LE + LEK K+M + Q + + L
Sbjct: 578 VILKFRDL---IEKLEKDVYAVL---CLEKEEKEMAHSEAQISSAQKRLTKSEDEKQLPR 631
Query: 1353 SW 1354
+W
Sbjct: 632 TW 633
Score = 38 (18.4 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 89 SELSANTNDPDDQVNKTEEIQSDE 112
+E SA+ DDQ + EE + DE
Sbjct: 106 TETSASKKH-DDQEEEEEEEEDDE 128
Score = 38 (18.4 bits), Expect = 3.4e-22, Sum P(3) = 3.4e-22
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
RQT +FSAT++
Sbjct: 379 RQTMLFSATMS 389
Score = 38 (18.4 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 706 SELSANTNDPDDQVNKTEEIQSDE 729
+E SA+ DDQ + EE + DE
Sbjct: 106 TETSASKKH-DDQEEEEEEEEDDE 128
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 203 (76.5 bits), Expect = 2.1e-36, Sum P(3) = 2.1e-36
Identities = 46/130 (35%), Positives = 73/130 (56%)
Query: 528 KHDEKDSYLYYFILQH----PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
K EK+ L + +H P + L FC R+ +LL +H ++Q++R
Sbjct: 303 KPHEKEQRLVQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQER 362
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
++L+ F+ ++L+ATDVAARGLDIP ++ V++ P T E Y+HR GRT RA +G
Sbjct: 363 FRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGH 422
Query: 644 TVVLI-ESDE 652
+ L E+D+
Sbjct: 423 AITLFTETDK 432
Score = 202 (76.2 bits), Expect = 8.5e-37, Sum P(3) = 8.5e-37
Identities = 46/130 (35%), Positives = 73/130 (56%)
Query: 1061 KHDEKDSYLYYFILQH----PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
K EK+ L + +H P + L FC R+ +LL +H ++Q++R
Sbjct: 303 KPHEKEQRLVQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQER 362
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
++L+ F+ ++L+ATDVAARGLDIP ++ V++ P T E Y+HR GRT RA +G
Sbjct: 363 FRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGH 422
Query: 1177 TLVLI-ESDE 1185
+ L E+D+
Sbjct: 423 AITLFTETDK 432
Score = 198 (74.8 bits), Expect = 8.5e-37, Sum P(3) = 8.5e-37
Identities = 45/130 (34%), Positives = 81/130 (62%)
Query: 872 KTRNKL---YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928
KT+ K A++++PTRELA+Q+ + ++ + ++VAC+ GG+ ++Q L K
Sbjct: 139 KTKQKSCRPLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREAL-KSAA 197
Query: 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 988
++VATPGRL + G +L ++ YLV+DE DRM++ G ++K+I+ + +++
Sbjct: 198 VVVATPGRLKDLQNDGSL---DLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSK--- 251
Query: 989 PRQTFVFSAT 998
RQT +F+AT
Sbjct: 252 -RQTVMFTAT 260
Score = 193 (73.0 bits), Expect = 2.1e-36, Sum P(3) = 2.1e-36
Identities = 46/144 (31%), Positives = 85/144 (59%)
Query: 255 KTRNKL---YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311
KT+ K A++++PTRELA+Q+ + ++ + ++VAC+ GG+ ++Q L K
Sbjct: 139 KTKQKSCRPLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREAL-KSAA 197
Query: 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 371
++VATPGRL + G +L ++ YLV+DE DRM++ G ++K+I+ + +++
Sbjct: 198 VVVATPGRLKDLQNDGSL---DLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSK--- 251
Query: 372 PRQTMIESGHFPELKNILDRVTMT 395
RQT++ + +P + L MT
Sbjct: 252 -RQTVMFTATWPPIVRNLASTFMT 274
Score = 130 (50.8 bits), Expect = 8.5e-37, Sum P(3) = 8.5e-37
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
GF +PT IQS P L A +D++G AETGSGKTLAFG+P L +++
Sbjct: 92 GFASPTAIQSATWP-LLFAGRDVIGIAETGSGKTLAFGLPCLKKVLD 137
Score = 130 (50.8 bits), Expect = 8.5e-37, Sum P(3) = 8.5e-37
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
GF +PT IQS P L A +D++G AETGSGKTLAFG+P L +++
Sbjct: 92 GFASPTAIQSATWP-LLFAGRDVIGIAETGSGKTLAFGLPCLKKVLD 137
Score = 125 (49.1 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 31/97 (31%), Positives = 56/97 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A++++PTRELA+Q+ + ++ + ++VAC+ GG+ ++Q L K ++VATPG L
Sbjct: 149 AVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREAL-KSAAVVVATPGRLK 207
Query: 1416 -LKR---IDLAKSIEYLESKIKKNRPDNWLEKAAKDM 1448
L+ +DL + ++YL D E+ KD+
Sbjct: 208 DLQNDGSLDLGR-VKYLVLDEADRMLDKGFEQDIKDI 243
Score = 55 (24.4 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLI-ESDE 1264
++++HR GRT RA +G + L E+D+
Sbjct: 405 EDYVHRIGRTGRAGADGHAITLFTETDK 432
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 223 (83.6 bits), Expect = 9.2e-37, Sum P(3) = 9.2e-37
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 167 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 226
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 227 FLEAGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 277
Score = 220 (82.5 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 51/129 (39%), Positives = 78/129 (60%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 167 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 226
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 227 FLEAGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 278
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 279 PKEVRQLAE 287
Score = 188 (71.2 bits), Expect = 9.2e-37, Sum P(3) = 9.2e-37
Identities = 49/164 (29%), Positives = 81/164 (49%)
Query: 1059 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 315 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 374
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 375 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 434
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
G P +K L K ++ + I+ ++ L+ R
Sbjct: 435 GTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLVDHR 474
Score = 186 (70.5 bits), Expect = 3.3e-36, Sum P(3) = 3.3e-36
Identities = 50/158 (31%), Positives = 82/158 (51%)
Query: 490 RTLCEE-IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI----LQHP 544
R L E+ +QD + I + +L+ I + + +C EKD L + +
Sbjct: 283 RQLAEDFLQDYVQINVGNL-ELSANHNILQIVD----VCMESEKDHKLIQLMEEIMAEKE 337
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+T++F + LT+ + + +H +Q +R L+ FR IL+ATDVA
Sbjct: 338 NKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVA 397
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+G
Sbjct: 398 SRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 435
Score = 122 (48.0 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPG L
Sbjct: 167 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 224
Score = 117 (46.2 bits), Expect = 9.2e-37, Sum P(3) = 9.2e-37
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ P+ ++ AL + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 96 SFPQYVMDALMDQNFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 152
Score = 117 (46.2 bits), Expect = 9.2e-37, Sum P(3) = 9.2e-37
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ P+ ++ AL + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 96 SFPQYVMDALMDQNFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 152
Score = 65 (27.9 bits), Expect = 5.1e-24, Sum P(3) = 5.1e-24
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRTAR+ N+G P +K L K ++ + I+ ++ L+
Sbjct: 416 NSSEDYVHRIGRTARSTNKGTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLV 471
Query: 1295 KKR 1297
R
Sbjct: 472 DHR 474
Score = 48 (22.0 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 249 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 277
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 240 (89.5 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 55/168 (32%), Positives = 99/168 (58%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHD---EKDSYLYYFILQ-HP 544
T+ EE++DL +++K+P + + + L + I + + ++++ + + + P
Sbjct: 367 TMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRTFP 426
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
++F + R+ LL ++ LH +++Q QRL+ L RF+D+ IL+ATDVA
Sbjct: 427 DHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATDVA 486
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
ARGLDI G++ VI++ +P T++ Y+HR GRTARA G +V L+ +E
Sbjct: 487 ARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEE 534
Score = 226 (84.6 bits), Expect = 3.7e-35, Sum P(3) = 3.7e-35
Identities = 52/149 (34%), Positives = 86/149 (57%)
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
P ++F + R+ LL ++ LH +++Q QRL+ L RF+D+ IL+ATDV
Sbjct: 426 PDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATDV 485
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
AARGLDI G++ VI++ +P T++ Y+HR GRTARA G ++ L+ +E + ++ +
Sbjct: 486 AARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA 545
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
+ V P D +L +K +L K +
Sbjct: 546 KTPVKARILPQDV-ILKFREKIENLEKDV 573
Score = 187 (70.9 bits), Expect = 5.8e-20, Sum P(3) = 5.8e-20
Identities = 61/222 (27%), Positives = 102/222 (45%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L PTREL IQV + +++ V VGG+ + Q L P IL+ATPGRL +
Sbjct: 256 LVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPDILIATPGRLID 315
Query: 940 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ FHL+ + L++DE DRM++ ++K I+ R+ S+ RQT +FSAT
Sbjct: 316 HLHNCPSFHLSS---VEVLILDEADRMLDEYFEEQMKEII-RLC----SRHRQTMLFSAT 367
Query: 999 LTHXXXXXXXXXXXX-XXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIG--ITKTLTE 1055
+T D + Q+ + I+ + D + +T+T +
Sbjct: 368 MTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRTFPD 427
Query: 1056 SKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQL 1096
+L +K ++ + +L G R ++S +RL L
Sbjct: 428 HVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEAL 469
Score = 175 (66.7 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 51/148 (34%), Positives = 76/148 (51%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L PTREL IQV + +++ V VGG+ + Q L P IL+ATPGRL +
Sbjct: 256 LVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPDILIATPGRLID 315
Query: 323 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ FHL+ + L++DE DRM++ ++K I+ R+ S+ RQTM+ S
Sbjct: 316 HLHNCPSFHLSS---VEVLILDEADRMLDEYFEEQMKEII-RLC----SRHRQTMLFSAT 367
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSAT 409
E L V++ P + FV S T
Sbjct: 368 MTEEVKDLASVSL---KNPTRIFVNSNT 392
Score = 122 (48.0 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 41/147 (27%), Positives = 66/147 (44%)
Query: 85 QVEVSELSANTNDPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTYTSANK-ELLEVDTSNN 143
Q +V + +A T D + + E+ +E +T A+ ++ E S
Sbjct: 101 QAKVKDGNAETEDNQSEKRECEDFGREEEEDNESQYSLDDETIFTKADTLKVKERKRSKK 160
Query: 144 ------EDMFVQMAEW---VKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
E F +E+ + F N+ +++A+ GFK PT IQ +P LL KD
Sbjct: 161 GGQKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLG-KD 219
Query: 192 IVGAAETGS-GKTLAFGIPILTGIVNK 217
I A TG+ GKT AF +P+L ++ K
Sbjct: 220 ICACAATGTVGKTAAFILPVLERLIYK 246
Score = 122 (48.0 bits), Expect = 5.8e-20, Sum P(3) = 5.8e-20
Identities = 41/147 (27%), Positives = 66/147 (44%)
Query: 702 QVEVSELSANTNDPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANK-ELLEVDTSNN 760
Q +V + +A T D + + E+ +E +T A+ ++ E S
Sbjct: 101 QAKVKDGNAETEDNQSEKRECEDFGREEEEDNESQYSLDDETIFTKADTLKVKERKRSKK 160
Query: 761 ------EDMFVQMAEW---VKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
E F +E+ + F N+ +++A+ GFK PT IQ +P LL KD
Sbjct: 161 GGQKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLG-KD 219
Query: 809 IVGAAETGS-GKTLAFGIPILTGIVNK 834
I A TG+ GKT AF +P+L ++ K
Sbjct: 220 ICACAATGTVGKTAAFILPVLERLIYK 246
Score = 115 (45.5 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 37/143 (25%), Positives = 66/143 (46%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
LI++ R + L+L PTREL IQV + +++ V VGG+ + Q L
Sbjct: 243 LIYKPRQAPIT-RVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRS 301
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIK-KNRPDNWLEKAAKDMXXXXXXENLIQPK 1461
P IL+ATPG L + + S ++ + D L++ ++ + +I+
Sbjct: 302 GPDILIATPGRL-IDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQM-----KEIIRLC 355
Query: 1462 ANSRENALMSKALVSKRKELQSL 1484
+ R+ L S + + K+L S+
Sbjct: 356 SRHRQTMLFSATMTEEVKDLASV 378
Score = 69 (29.3 bits), Expect = 5.8e-20, Sum P(3) = 5.8e-20
Identities = 25/102 (24%), Positives = 50/102 (49%)
Query: 1204 DFPIDESVLSLIKKR-IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIES 1262
D ID V + + R +D+ + ++ + + N +++HR GRTARA G ++ L+
Sbjct: 474 DEQIDILVATDVAARGLDI-EGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGE 532
Query: 1263 DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1304
+E + ++ + + V P D +L +K +L K +
Sbjct: 533 EERKMLKEIVKAAKTPVKARILPQDV-ILKFREKIENLEKDV 573
Score = 45 (20.9 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 398 SQPRQTFVFSATLT 411
S+ RQT +FSAT+T
Sbjct: 356 SRHRQTMLFSATMT 369
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 223 (83.6 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 49/127 (38%), Positives = 80/127 (62%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LILAPTRELA+Q+Q I GK + ++ CV GG+ Q+R L++ + +ATPGRL +
Sbjct: 202 LILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLID 261
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ G T L ++ YLV+DE DRM++ G P+++ I+ ++ RQT++ S +
Sbjct: 262 MLESGK---TNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIR-----PDRQTLMWSATW 313
Query: 383 P-ELKNI 388
P E++N+
Sbjct: 314 PKEVRNM 320
Score = 222 (83.2 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 48/119 (40%), Positives = 75/119 (63%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LILAPTRELA+Q+Q I GK + ++ CV GG+ Q+R L++ + +ATPGRL +
Sbjct: 202 LILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLID 261
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
++ G T L ++ YLV+DE DRM++ G P+++ I+ ++ RQT ++SAT
Sbjct: 262 MLESGK---TNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIR-----PDRQTLMWSAT 312
Score = 185 (70.2 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 46/161 (28%), Positives = 82/161 (50%)
Query: 1029 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-----LVF 1083
LQD + + + DL+ IT+ + +++ + +++D + + G+ L+F
Sbjct: 325 LQDFIQVNIGSL-DLSANHRITQIV---EVVSESEKRDRMIRHMEKVMDGKDSKNKILIF 380
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
+ +T+ L L +H Q +R LD+F+ + I++ATDVA+RG+D+
Sbjct: 381 VGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDV 440
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
I HV++Y P SE YIHR GRT RA +G + ++
Sbjct: 441 RNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTE 481
Score = 184 (69.8 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 45/161 (27%), Positives = 82/161 (50%)
Query: 496 IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-----LVF 550
+QD + + + DL+ IT+ + +++ + +++D + + G+ L+F
Sbjct: 325 LQDFIQVNIGSL-DLSANHRITQIV---EVVSESEKRDRMIRHMEKVMDGKDSKNKILIF 380
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610
+ +T+ L L +H Q +R LD+F+ + I++ATDVA+RG+D+
Sbjct: 381 VGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDV 440
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651
I HV++Y P SE YIHR GRT RA +G + ++
Sbjct: 441 RNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTE 481
Score = 131 (51.2 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LILAPTRELA+Q+Q I GK + ++ CV GG+ Q+R L++ + +ATPG L
Sbjct: 202 LILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRL-- 259
Query: 1417 KRIDLAKS 1424
ID+ +S
Sbjct: 260 --IDMLES 265
Score = 122 (48.0 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 36/91 (39%), Positives = 48/91 (52%)
Query: 132 NKELLEVDTSNNE-DMFVQMAEWVK----FN---IPETIIRALYQKGFKTPTKIQSMVMP 183
N+ EVD E M VQ ++ K F+ P ++ + +GF PT IQS P
Sbjct: 98 NRSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWP 157
Query: 184 SALLARKDIVGAAETGSGKTLAFGIPILTGI 214
AL R D+VG AETGSGKTL + +P + I
Sbjct: 158 MALSGR-DVVGIAETGSGKTLTYCLPAIVHI 187
Score = 122 (48.0 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 36/91 (39%), Positives = 48/91 (52%)
Query: 749 NKELLEVDTSNNE-DMFVQMAEWVK----FN---IPETIIRALYQKGFKTPTKIQSMVMP 800
N+ EVD E M VQ ++ K F+ P ++ + +GF PT IQS P
Sbjct: 98 NRSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWP 157
Query: 801 SALLARKDIVGAAETGSGKTLAFGIPILTGI 831
AL R D+VG AETGSGKTL + +P + I
Sbjct: 158 MALSGR-DVVGIAETGSGKTLTYCLPAIVHI 187
Score = 57 (25.1 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESD 1263
ID+ ++I ++ + N ++++HR GRT RA +G + ++
Sbjct: 438 IDV-RNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTE 481
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 216 (81.1 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 65/214 (30%), Positives = 108/214 (50%)
Query: 1031 DLLNIKSPKIVD-LTEKIG-ITKTLTESKILCKHDEK-DSYLYYFILQHPGR--TLVFCN 1085
D+ + +VD +T ++G + +T + L ++ + L +L+H L+F
Sbjct: 188 DIRTLAQDILVDPVTVQVGTVAPAVTVAHALYPVEQHLKTPLLLELLRHTDTESVLIFTR 247
Query: 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145
+ KRL + L L +++Q +R LD FRD IL+ATD+AARG+D+
Sbjct: 248 TKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQ 307
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
+ HVI+Y +P T+E YIHR GRT RA G L+ SD+ + + SL ++
Sbjct: 308 VSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIERSLGAPIERRTV 367
Query: 1206 P-IDESVLSLIKKRIDLAKSI-EYLESKIKKNRP 1237
D SV + KK ++ A+ E +++ N+P
Sbjct: 368 QGFDYSVPAP-KKDVEFARPPREPRQARPHANQP 400
Score = 214 (80.4 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 54/160 (33%), Positives = 85/160 (53%)
Query: 498 DLLNIKSPKIVD-LTEKIG-ITKTLTESKILCKHDEK-DSYLYYFILQHPGR--TLVFCN 552
D+ + +VD +T ++G + +T + L ++ + L +L+H L+F
Sbjct: 188 DIRTLAQDILVDPVTVQVGTVAPAVTVAHALYPVEQHLKTPLLLELLRHTDTESVLIFTR 247
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612
+ KRL + L L +++Q +R LD FRD IL+ATD+AARG+D+
Sbjct: 248 TKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQ 307
Query: 613 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+ HVI+Y +P T+E YIHR GRT RA G L+ SD+
Sbjct: 308 VSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDD 347
Score = 193 (73.0 bits), Expect = 4.9e-21, Sum P(3) = 4.9e-21
Identities = 59/205 (28%), Positives = 98/205 (47%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
R ++ AL++APTRELA Q+ + + G+ T ++ V GG+ Q++ L ++VA
Sbjct: 68 RGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVAC 127
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRL + I G L+ L LV+DE D+M + G P+++ +L + RQT
Sbjct: 128 PGRLLDHIAQGTIDLSRL---EVLVLDEADQMFDMGFLPDIRRVLKHLPPR-----RQTL 179
Query: 994 VFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLL----NIKSPKIVDL-----T 1044
+FSAT+ P++ L ++K+P +++L T
Sbjct: 180 LFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVTVAHALYPVEQHLKTPLLLELLRHTDT 239
Query: 1045 EKIGI-TKTLTESKILCKHDEKDSY 1068
E + I T+T +K L + EK Y
Sbjct: 240 ESVLIFTRTKHRAKRLGEQLEKAGY 264
Score = 184 (69.8 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 45/157 (28%), Positives = 81/157 (51%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
R ++ AL++APTRELA Q+ + + G+ T ++ V GG+ Q++ L ++VA
Sbjct: 68 RGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVAC 127
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRL + I G L+ L LV+DE D+M + G P+++ +L + RQT+
Sbjct: 128 PGRLLDHIAQGTIDLSRL---EVLVLDEADQMFDMGFLPDIRRVLKHLPPR-----RQTL 179
Query: 377 IESGHFP-ELKNILDRVTMTETSQPRQTFVFSATLTH 412
+ S P +++ + + + + T + T+ H
Sbjct: 180 LFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVTVAH 216
Score = 124 (48.7 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ F + + G++TPT IQ+ +P A++A +D++G A+TG+GKT AF +PIL
Sbjct: 2 DFKSFGFHPAVATGIAAAGYETPTPIQAQAIP-AVMAGRDVMGLAQTGTGKTAAFALPIL 60
Score = 124 (48.7 bits), Expect = 4.9e-21, Sum P(3) = 4.9e-21
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ F + + G++TPT IQ+ +P A++A +D++G A+TG+GKT AF +PIL
Sbjct: 2 DFKSFGFHPAVATGIAAAGYETPTPIQAQAIP-AVMAGRDVMGLAQTGTGKTAAFALPIL 60
Score = 106 (42.4 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL++APTRELA Q+ + + G+ T ++ V GG+ Q++ L ++VA PG L
Sbjct: 73 ALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACPGRL 131
Score = 59 (25.8 bits), Expect = 4.9e-21, Sum P(3) = 4.9e-21
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP-IDESVLSLIKKRI 1298
++HR GRT RA G L+ SD+ + + SL ++ D SV + KK +
Sbjct: 323 YIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIERSLGAPIERRTVQGFDYSVPAP-KKDV 381
Query: 1299 DLAKSI-EYLESKIKKNRP 1316
+ A+ E +++ N+P
Sbjct: 382 EFARPPREPRQARPHANQP 400
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 219 (82.2 bits), Expect = 6.4e-36, Sum P(3) = 6.4e-36
Identities = 55/206 (26%), Positives = 105/206 (50%)
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPG------RTLCEEIQDLLNIKSPKIVDLT 511
+G +K LT+ H ++ + L+ L H L + + +N + VD+
Sbjct: 162 LGFSKELTQINKAADHRKRQTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIA 221
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
++ + LT+ + L +H + + + + ++F + S RL +LLT +
Sbjct: 222 KRFYLADNLTQKEALLQH--------FLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNA 273
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+ L +NQ QR + ++ F + IL+ TD+A+RGLD+ + HVI++ +P+ +E ++HR
Sbjct: 274 VALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHR 333
Query: 632 SGRTARANNEGLTVVLI-ESDEIPLK 656
GRT RA +G + L+ +D + LK
Sbjct: 334 IGRTGRAGTKGDAISLVGPNDWLSLK 359
Score = 207 (77.9 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 50/122 (40%), Positives = 68/122 (55%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
+IL PTRELA QV + + T K ++GG + Q+++L K P +VATPGRL +
Sbjct: 77 VILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGRLAD 136
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+ GHFHL L L++DE DRM++ G EL I + RQT +FSATL
Sbjct: 137 HLTQGHFHLNGL---ELLILDEADRMLDLGFSKELTQI----NKAADHRKRQTLLFSATL 189
Query: 1000 TH 1001
H
Sbjct: 190 DH 191
Score = 201 (75.8 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 47/169 (27%), Positives = 93/169 (55%)
Query: 1033 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKR 1092
+N + VD+ ++ + LT+ + L +H + + + + ++F + S R
Sbjct: 210 INAGHSEHVDIAKRFYLADNLTQKEALLQH--------FLVTEKSQQIIIFTATRSDTDR 261
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152
L +LLT + + L +NQ QR + ++ F + IL+ TD+A+RGLD+ + HVI++
Sbjct: 262 LAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINF 321
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS-LEKKV 1200
+P+ +E ++HR GRT RA +G + L+ ++ L +K + L++K+
Sbjct: 322 DMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDW-LSLKNVEAFLQQKI 369
Score = 181 (68.8 bits), Expect = 6.4e-36, Sum P(3) = 6.4e-36
Identities = 45/117 (38%), Positives = 64/117 (54%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
+IL PTRELA QV + + T K ++GG + Q+++L K P +VATPGRL +
Sbjct: 77 VILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGRLAD 136
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
+ GHFHL L L++DE DRM++ G EL I + RQT++ S
Sbjct: 137 HLTQGHFHLNGL---ELLILDEADRMLDLGFSKELTQI----NKAADHRKRQTLLFS 186
Score = 117 (46.2 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
F + ++ + GF PT+IQ +P+A+ A D++ +++TGSGKTLAF IP L
Sbjct: 6 FGLDSALMSTIEHMGFNEPTQIQQQAIPAAM-AGHDLIASSKTGSGKTLAFIIPAL 60
Score = 117 (46.2 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
F + ++ + GF PT+IQ +P+A+ A D++ +++TGSGKTLAF IP L
Sbjct: 6 FGLDSALMSTIEHMGFNEPTQIQQQAIPAAM-AGHDLIASSKTGSGKTLAFIIPAL 60
Score = 106 (42.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+IL PTRELA QV + + T K ++GG + Q+++L K P +VATPG L+
Sbjct: 77 VILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGRLA 135
Score = 60 (26.2 bits), Expect = 5.2e-22, Sum P(3) = 5.2e-22
Identities = 26/118 (22%), Positives = 54/118 (45%)
Query: 1214 LIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1273
L + +DL + + K+ + ++HR GRT RA +G + L+ ++ L +K
Sbjct: 305 LASRGLDLINVSHVINFDMPKHT-EEFVHRIGRTGRAGTKGDAISLVGPNDW-LSLKNVE 362
Query: 1274 S-LEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDM 1327
+ L++K+ + +K + + A + +K KK N+P ++K D+
Sbjct: 363 AFLQQKISFTKVEGIKVKFKGLKPKKEKAVKAKVSVAKDKKAVSNKPRKVIKKTFLDI 420
Score = 53 (23.7 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 349 IESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 408
+ GHF L N L+ + + E + M++ G EL I + RQT +FSA
Sbjct: 138 LTQGHF-HL-NGLELLILDEADR----MLDLGFSKELTQI----NKAADHRKRQTLLFSA 187
Query: 409 TLTH 412
TL H
Sbjct: 188 TLDH 191
Score = 49 (22.3 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 23/98 (23%), Positives = 38/98 (38%)
Query: 389 LDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKS 448
L ++ + RQT +FSATL H P KR+ +N
Sbjct: 168 LTQINKAADHRKRQTLLFSATLDHAQVNEFATELLTK---------P--KRIA--INAGH 214
Query: 449 PKIVDLTEKIGITKTLTESKILCKH---DEKDSYLYYF 483
+ VD+ ++ + LT+ + L +H EK + F
Sbjct: 215 SEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQIIIF 252
Score = 40 (19.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 1047 IGITKTLTESKILCKHDEKDSYLYYFILQH 1076
+G +K LT+ H ++ + L+ L H
Sbjct: 162 LGFSKELTQINKAADHRKRQTLLFSATLDH 191
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 219 (82.2 bits), Expect = 6.4e-36, Sum P(3) = 6.4e-36
Identities = 55/206 (26%), Positives = 105/206 (50%)
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPG------RTLCEEIQDLLNIKSPKIVDLT 511
+G +K LT+ H ++ + L+ L H L + + +N + VD+
Sbjct: 162 LGFSKELTQINKAADHRKRQTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIA 221
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
++ + LT+ + L +H + + + + ++F + S RL +LLT +
Sbjct: 222 KRFYLADNLTQKEALLQH--------FLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNA 273
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+ L +NQ QR + ++ F + IL+ TD+A+RGLD+ + HVI++ +P+ +E ++HR
Sbjct: 274 VALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHR 333
Query: 632 SGRTARANNEGLTVVLI-ESDEIPLK 656
GRT RA +G + L+ +D + LK
Sbjct: 334 IGRTGRAGTKGDAISLVGPNDWLSLK 359
Score = 207 (77.9 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 50/122 (40%), Positives = 68/122 (55%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
+IL PTRELA QV + + T K ++GG + Q+++L K P +VATPGRL +
Sbjct: 77 VILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGRLAD 136
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+ GHFHL L L++DE DRM++ G EL I + RQT +FSATL
Sbjct: 137 HLTQGHFHLNGL---ELLILDEADRMLDLGFSKELTQI----NKAADHRKRQTLLFSATL 189
Query: 1000 TH 1001
H
Sbjct: 190 DH 191
Score = 201 (75.8 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 47/169 (27%), Positives = 93/169 (55%)
Query: 1033 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKR 1092
+N + VD+ ++ + LT+ + L +H + + + + ++F + S R
Sbjct: 210 INAGHSEHVDIAKRFYLADNLTQKEALLQH--------FLVTEKSQQIIIFTATRSDTDR 261
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152
L +LLT + + L +NQ QR + ++ F + IL+ TD+A+RGLD+ + HVI++
Sbjct: 262 LAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINF 321
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS-LEKKV 1200
+P+ +E ++HR GRT RA +G + L+ ++ L +K + L++K+
Sbjct: 322 DMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDW-LSLKNVEAFLQQKI 369
Score = 181 (68.8 bits), Expect = 6.4e-36, Sum P(3) = 6.4e-36
Identities = 45/117 (38%), Positives = 64/117 (54%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
+IL PTRELA QV + + T K ++GG + Q+++L K P +VATPGRL +
Sbjct: 77 VILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGRLAD 136
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
+ GHFHL L L++DE DRM++ G EL I + RQT++ S
Sbjct: 137 HLTQGHFHLNGL---ELLILDEADRMLDLGFSKELTQI----NKAADHRKRQTLLFS 186
Score = 117 (46.2 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
F + ++ + GF PT+IQ +P+A+ A D++ +++TGSGKTLAF IP L
Sbjct: 6 FGLDSALMSTIEHMGFNEPTQIQQQAIPAAM-AGHDLIASSKTGSGKTLAFIIPAL 60
Score = 117 (46.2 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
F + ++ + GF PT+IQ +P+A+ A D++ +++TGSGKTLAF IP L
Sbjct: 6 FGLDSALMSTIEHMGFNEPTQIQQQAIPAAM-AGHDLIASSKTGSGKTLAFIIPAL 60
Score = 106 (42.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+IL PTRELA QV + + T K ++GG + Q+++L K P +VATPG L+
Sbjct: 77 VILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGRLA 135
Score = 60 (26.2 bits), Expect = 5.2e-22, Sum P(3) = 5.2e-22
Identities = 26/118 (22%), Positives = 54/118 (45%)
Query: 1214 LIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1273
L + +DL + + K+ + ++HR GRT RA +G + L+ ++ L +K
Sbjct: 305 LASRGLDLINVSHVINFDMPKHT-EEFVHRIGRTGRAGTKGDAISLVGPNDW-LSLKNVE 362
Query: 1274 S-LEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDM 1327
+ L++K+ + +K + + A + +K KK N+P ++K D+
Sbjct: 363 AFLQQKISFTKVEGIKVKFKGLKPKKEKAVKAKVSVAKDKKAVSNKPRKVIKKTFLDI 420
Score = 53 (23.7 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 349 IESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 408
+ GHF L N L+ + + E + M++ G EL I + RQT +FSA
Sbjct: 138 LTQGHF-HL-NGLELLILDEADR----MLDLGFSKELTQI----NKAADHRKRQTLLFSA 187
Query: 409 TLTH 412
TL H
Sbjct: 188 TLDH 191
Score = 49 (22.3 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 23/98 (23%), Positives = 38/98 (38%)
Query: 389 LDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKS 448
L ++ + RQT +FSATL H P KR+ +N
Sbjct: 168 LTQINKAADHRKRQTLLFSATLDHAQVNEFATELLTK---------P--KRIA--INAGH 214
Query: 449 PKIVDLTEKIGITKTLTESKILCKH---DEKDSYLYYF 483
+ VD+ ++ + LT+ + L +H EK + F
Sbjct: 215 SEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQIIIF 252
Score = 40 (19.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 1047 IGITKTLTESKILCKHDEKDSYLYYFILQH 1076
+G +K LT+ H ++ + L+ L H
Sbjct: 162 LGFSKELTQINKAADHRKRQTLLFSATLDH 191
>GENEDB_PFALCIPARUM|PF14_0429 [details] [associations]
symbol:PF14_0429 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HSSP:P10081 RefSeq:XP_001348603.1
ProteinModelPortal:Q8IL21 PRIDE:Q8IL21
EnsemblProtists:PF14_0429:mRNA GeneID:812011 KEGG:pfa:PF14_0429
EuPathDB:PlasmoDB:PF3D7_1445200 HOGENOM:HOG000282109
ProtClustDB:CLSZ2431945 Uniprot:Q8IL21
Length = 796
Score = 229 (85.7 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 54/140 (38%), Positives = 81/140 (57%)
Query: 868 EFVKKTRN--KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
E+ KK +N K LIL PTRELA+Q+ H KY + ++ ++GG++ KQ RIL K
Sbjct: 306 EYKKKLKNIQKFRCLILVPTRELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMK 365
Query: 926 CPHILVATPGRLWEFIQLGH--FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
P IL+ TPGRL F+ L + ++ ++ I YLV DE D+MIE ++ I +
Sbjct: 366 KPEILICTPGRLKYFLHLENPIKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHIYK 425
Query: 984 TETSQPR---QTFVFSATLT 1000
+ + + QTF+ SATL+
Sbjct: 426 SVGDKKKKLIQTFLLSATLS 445
Score = 211 (79.3 bits), Expect = 1.3e-34, Sum P(4) = 1.3e-34
Identities = 47/118 (39%), Positives = 69/118 (58%)
Query: 251 EFVKKTRN--KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
E+ KK +N K LIL PTRELA+Q+ H KY + ++ ++GG++ KQ RIL K
Sbjct: 306 EYKKKLKNIQKFRCLILVPTRELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMK 365
Query: 309 CPHILVATPGRLWEFIQLGH--FHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364
P IL+ TPGRL F+ L + ++ ++ I YLV DE D+MIE ++ I +
Sbjct: 366 KPEILICTPGRLKYFLHLENPIKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHI 423
Score = 182 (69.1 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 58/181 (32%), Positives = 95/181 (52%)
Query: 1085 NSISSV--KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN-SILLATDVAARGL 1141
N SS+ K + L K + +H+ ++RL+N+++F QN+ +IL TDV +RG+
Sbjct: 574 NLESSIPKKYRSNLYIKNKVNIYSIHSKQKLKERLENINKFSQQNHKAILFCTDVLSRGI 633
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK-V 1200
D+ + +I + P + ++HRSGRTAR +G + I EI Y K SLEK +
Sbjct: 634 DLDKCDLIIQLNCPISDITFVHRSGRTARNFKKGKCICFITETEI--Y-KWKTSLEKVGI 690
Query: 1201 DLPDFP-------IDESVLSLIKKRIDLA-KSIEYLESKIKKNRPDNWLHRSGRTARANN 1252
++ D I+E + I K I+ A K IE+ + I K + D+ L + R A ++
Sbjct: 691 NIQDLQELDYLKSINEEDYAKINKAIECANKMIEFQDKLILKKK-DSLLKKLAREAELDD 749
Query: 1253 E 1253
E
Sbjct: 750 E 750
Score = 153 (58.9 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 38/114 (33%), Positives = 64/114 (56%)
Query: 552 NSISSV--KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN-SILLATDVAARGL 608
N SS+ K + L K + +H+ ++RL+N+++F QN+ +IL TDV +RG+
Sbjct: 574 NLESSIPKKYRSNLYIKNKVNIYSIHSKQKLKERLENINKFSQQNHKAILFCTDVLSRGI 633
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662
D+ + +I + P + ++HRSGRTAR +G + I EI K K +L+
Sbjct: 634 DLDKCDLIIQLNCPISDITFVHRSGRTARNFKKGKCICFITETEI-YKWKTSLE 686
Score = 147 (56.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 36/96 (37%), Positives = 56/96 (58%)
Query: 1335 NLIQPNQLLIFESR--NLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS 1392
N I N+L ++ + N++ + LIL PTRELA+Q+ H KY + ++ ++GG++
Sbjct: 297 NNILINKLKEYKKKLKNIQ-KFRCLILVPTRELALQILKHFNYINKYINLFISTIIGGLN 355
Query: 1393 TEKQLRILNKCPHILVATPGALSLKRIDLAKSIEYL 1428
KQ RIL K P IL+ TPG L + L I+Y+
Sbjct: 356 LNKQKRILMKKPEILICTPGRLKYF-LHLENPIKYI 390
Score = 134 (52.2 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWV---KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
N+E LE D NN + W K I +++++L+ F PT+IQS + ++
Sbjct: 216 NEEELEKD--NNIKYKIHCNNWNNGGKIFILHSVMKSLFDNAFFKPTEIQSKTLEKSIND 273
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGI-VNKLE 219
+ DIV ++TG+GKTL F +PIL I +NKL+
Sbjct: 274 KNDIVVISKTGTGKTLTFCLPILNNILINKLK 305
Score = 134 (52.2 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWV---KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
N+E LE D NN + W K I +++++L+ F PT+IQS + ++
Sbjct: 216 NEEELEKD--NNIKYKIHCNNWNNGGKIFILHSVMKSLFDNAFFKPTEIQSKTLEKSIND 273
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGI-VNKLE 836
+ DIV ++TG+GKTL F +PIL I +NKL+
Sbjct: 274 KNDIVVISKTGTGKTLTFCLPILNNILINKLK 305
Score = 88 (36.0 bits), Expect = 6.3e-27, Sum P(4) = 6.3e-27
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK-VDLPDFP-------IDESVL 1291
++HRSGRTAR +G + I EI Y K SLEK +++ D I+E
Sbjct: 653 FVHRSGRTARNFKKGKCICFITETEI--Y-KWKTSLEKVGINIQDLQELDYLKSINEEDY 709
Query: 1292 SLIKKRIDLA-KSIEYLESKIKKNRPDNWLEKAAKD 1326
+ I K I+ A K IE+ + I K + D+ L+K A++
Sbjct: 710 AKINKAIECANKMIEFQDKLILKKK-DSLLKKLARE 744
Score = 46 (21.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 1247 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES--VLSLIKKRIDLAKSI 1304
T R N + T+ I ++ IK+ SL+ L F I+++ + +KR K
Sbjct: 79 TKRENQDDTTVGCISREDKK--IKIEESLQND-RLEHFDINDNNFIEKRKRKRKRGKKKK 135
Query: 1305 EYLESKIKKNRPDNWLEKAAKD 1326
+ + S ++ N DN L+K D
Sbjct: 136 KIINSNMQINTTDNNLKKEKDD 157
Score = 40 (19.1 bits), Expect = 6.3e-27, Sum P(4) = 6.3e-27
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 552 NSISSVKRLTQLLTMLKCSPLPLHASMNQ----RQRLKNLDRFR 591
N I + + T+ C P+ + +N+ +++LKN+ +FR
Sbjct: 275 NDIVVISKTGTGKTLTFCLPILNNILINKLKEYKKKLKNIQKFR 318
Score = 38 (18.4 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 1079 RTLVFCNSISSVKRLTQLLTML 1100
+ ++F N+I S K+L + L
Sbjct: 548 KIIIFVNTIKSAKQLNAIFKHL 569
Score = 38 (18.4 bits), Expect = 1.3e-34, Sum P(4) = 1.3e-34
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 546 RTLVFCNSISSVKRLTQLLTML 567
+ ++F N+I S K+L + L
Sbjct: 548 KIIIFVNTIKSAKQLNAIFKHL 569
Score = 38 (18.4 bits), Expect = 3.9e-34, Sum P(5) = 3.9e-34
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 872 KTRNKLYALILAPTRELAIQVQN 894
K + + +L+ T L +Q+QN
Sbjct: 430 KKKKLIQTFLLSATLSLTVQLQN 452
Score = 38 (18.4 bits), Expect = 9.0e-17, Sum P(4) = 9.0e-17
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 255 KTRNKLYALILAPTRELAIQVQN 277
K + + +L+ T L +Q+QN
Sbjct: 430 KKKKLIQTFLLSATLSLTVQLQN 452
>UNIPROTKB|Q8IL21 [details] [associations]
symbol:PF14_0429 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P10081 RefSeq:XP_001348603.1
ProteinModelPortal:Q8IL21 PRIDE:Q8IL21
EnsemblProtists:PF14_0429:mRNA GeneID:812011 KEGG:pfa:PF14_0429
EuPathDB:PlasmoDB:PF3D7_1445200 HOGENOM:HOG000282109
ProtClustDB:CLSZ2431945 Uniprot:Q8IL21
Length = 796
Score = 229 (85.7 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 54/140 (38%), Positives = 81/140 (57%)
Query: 868 EFVKKTRN--KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
E+ KK +N K LIL PTRELA+Q+ H KY + ++ ++GG++ KQ RIL K
Sbjct: 306 EYKKKLKNIQKFRCLILVPTRELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMK 365
Query: 926 CPHILVATPGRLWEFIQLGH--FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
P IL+ TPGRL F+ L + ++ ++ I YLV DE D+MIE ++ I +
Sbjct: 366 KPEILICTPGRLKYFLHLENPIKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHIYK 425
Query: 984 TETSQPR---QTFVFSATLT 1000
+ + + QTF+ SATL+
Sbjct: 426 SVGDKKKKLIQTFLLSATLS 445
Score = 211 (79.3 bits), Expect = 1.3e-34, Sum P(4) = 1.3e-34
Identities = 47/118 (39%), Positives = 69/118 (58%)
Query: 251 EFVKKTRN--KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
E+ KK +N K LIL PTRELA+Q+ H KY + ++ ++GG++ KQ RIL K
Sbjct: 306 EYKKKLKNIQKFRCLILVPTRELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMK 365
Query: 309 CPHILVATPGRLWEFIQLGH--FHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364
P IL+ TPGRL F+ L + ++ ++ I YLV DE D+MIE ++ I +
Sbjct: 366 KPEILICTPGRLKYFLHLENPIKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHI 423
Score = 182 (69.1 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 58/181 (32%), Positives = 95/181 (52%)
Query: 1085 NSISSV--KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN-SILLATDVAARGL 1141
N SS+ K + L K + +H+ ++RL+N+++F QN+ +IL TDV +RG+
Sbjct: 574 NLESSIPKKYRSNLYIKNKVNIYSIHSKQKLKERLENINKFSQQNHKAILFCTDVLSRGI 633
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK-V 1200
D+ + +I + P + ++HRSGRTAR +G + I EI Y K SLEK +
Sbjct: 634 DLDKCDLIIQLNCPISDITFVHRSGRTARNFKKGKCICFITETEI--Y-KWKTSLEKVGI 690
Query: 1201 DLPDFP-------IDESVLSLIKKRIDLA-KSIEYLESKIKKNRPDNWLHRSGRTARANN 1252
++ D I+E + I K I+ A K IE+ + I K + D+ L + R A ++
Sbjct: 691 NIQDLQELDYLKSINEEDYAKINKAIECANKMIEFQDKLILKKK-DSLLKKLAREAELDD 749
Query: 1253 E 1253
E
Sbjct: 750 E 750
Score = 153 (58.9 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 38/114 (33%), Positives = 64/114 (56%)
Query: 552 NSISSV--KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN-SILLATDVAARGL 608
N SS+ K + L K + +H+ ++RL+N+++F QN+ +IL TDV +RG+
Sbjct: 574 NLESSIPKKYRSNLYIKNKVNIYSIHSKQKLKERLENINKFSQQNHKAILFCTDVLSRGI 633
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662
D+ + +I + P + ++HRSGRTAR +G + I EI K K +L+
Sbjct: 634 DLDKCDLIIQLNCPISDITFVHRSGRTARNFKKGKCICFITETEI-YKWKTSLE 686
Score = 147 (56.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 36/96 (37%), Positives = 56/96 (58%)
Query: 1335 NLIQPNQLLIFESR--NLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS 1392
N I N+L ++ + N++ + LIL PTRELA+Q+ H KY + ++ ++GG++
Sbjct: 297 NNILINKLKEYKKKLKNIQ-KFRCLILVPTRELALQILKHFNYINKYINLFISTIIGGLN 355
Query: 1393 TEKQLRILNKCPHILVATPGALSLKRIDLAKSIEYL 1428
KQ RIL K P IL+ TPG L + L I+Y+
Sbjct: 356 LNKQKRILMKKPEILICTPGRLKYF-LHLENPIKYI 390
Score = 134 (52.2 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWV---KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
N+E LE D NN + W K I +++++L+ F PT+IQS + ++
Sbjct: 216 NEEELEKD--NNIKYKIHCNNWNNGGKIFILHSVMKSLFDNAFFKPTEIQSKTLEKSIND 273
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGI-VNKLE 219
+ DIV ++TG+GKTL F +PIL I +NKL+
Sbjct: 274 KNDIVVISKTGTGKTLTFCLPILNNILINKLK 305
Score = 134 (52.2 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWV---KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
N+E LE D NN + W K I +++++L+ F PT+IQS + ++
Sbjct: 216 NEEELEKD--NNIKYKIHCNNWNNGGKIFILHSVMKSLFDNAFFKPTEIQSKTLEKSIND 273
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGI-VNKLE 836
+ DIV ++TG+GKTL F +PIL I +NKL+
Sbjct: 274 KNDIVVISKTGTGKTLTFCLPILNNILINKLK 305
Score = 88 (36.0 bits), Expect = 6.3e-27, Sum P(4) = 6.3e-27
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK-VDLPDFP-------IDESVL 1291
++HRSGRTAR +G + I EI Y K SLEK +++ D I+E
Sbjct: 653 FVHRSGRTARNFKKGKCICFITETEI--Y-KWKTSLEKVGINIQDLQELDYLKSINEEDY 709
Query: 1292 SLIKKRIDLA-KSIEYLESKIKKNRPDNWLEKAAKD 1326
+ I K I+ A K IE+ + I K + D+ L+K A++
Sbjct: 710 AKINKAIECANKMIEFQDKLILKKK-DSLLKKLARE 744
Score = 46 (21.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 1247 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES--VLSLIKKRIDLAKSI 1304
T R N + T+ I ++ IK+ SL+ L F I+++ + +KR K
Sbjct: 79 TKRENQDDTTVGCISREDKK--IKIEESLQND-RLEHFDINDNNFIEKRKRKRKRGKKKK 135
Query: 1305 EYLESKIKKNRPDNWLEKAAKD 1326
+ + S ++ N DN L+K D
Sbjct: 136 KIINSNMQINTTDNNLKKEKDD 157
Score = 40 (19.1 bits), Expect = 6.3e-27, Sum P(4) = 6.3e-27
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 552 NSISSVKRLTQLLTMLKCSPLPLHASMNQ----RQRLKNLDRFR 591
N I + + T+ C P+ + +N+ +++LKN+ +FR
Sbjct: 275 NDIVVISKTGTGKTLTFCLPILNNILINKLKEYKKKLKNIQKFR 318
Score = 38 (18.4 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 1079 RTLVFCNSISSVKRLTQLLTML 1100
+ ++F N+I S K+L + L
Sbjct: 548 KIIIFVNTIKSAKQLNAIFKHL 569
Score = 38 (18.4 bits), Expect = 1.3e-34, Sum P(4) = 1.3e-34
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 546 RTLVFCNSISSVKRLTQLLTML 567
+ ++F N+I S K+L + L
Sbjct: 548 KIIIFVNTIKSAKQLNAIFKHL 569
Score = 38 (18.4 bits), Expect = 3.9e-34, Sum P(5) = 3.9e-34
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 872 KTRNKLYALILAPTRELAIQVQN 894
K + + +L+ T L +Q+QN
Sbjct: 430 KKKKLIQTFLLSATLSLTVQLQN 452
Score = 38 (18.4 bits), Expect = 9.0e-17, Sum P(4) = 9.0e-17
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 255 KTRNKLYALILAPTRELAIQVQN 277
K + + +L+ T L +Q+QN
Sbjct: 430 KKKKLIQTFLLSATLSLTVQLQN 452
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 352 (129.0 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 91/301 (30%), Positives = 151/301 (50%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 936
YA+++APTRELA Q++ + Y +V +VGG S E+Q L+I C I++ATPGR
Sbjct: 391 YAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGC-EIVIATPGR 449
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + L + NY+V+DE DRMI+ G P++ +LD + + +
Sbjct: 450 LIDCLERRYAVLNQC---NYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELD 506
Query: 997 ATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
+ P ++RL +++P +V + T +++
Sbjct: 507 EKKIYRTTYMFSATM-----------PPGVERLARKY-LRNPVVVTIGTAGKTTDLISQH 554
Query: 1057 KILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
I+ K EK L + + +T +VF N+ + + + L LH +Q Q
Sbjct: 555 VIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQ 614
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
R +L+ FR + ++L+ATDV RG+DIP + HVI+Y +P+ E+Y HR GRT RA G
Sbjct: 615 REISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSG 674
Query: 1176 L 1176
+
Sbjct: 675 V 675
Score = 199 (75.1 bits), Expect = 5.6e-35, Sum P(3) = 5.6e-35
Identities = 46/143 (32%), Positives = 77/143 (53%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRL 560
+++P +V + T +++ I+ K EK L + + +T +VF N+ + +
Sbjct: 533 LRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSI 592
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L LH +Q QR +L+ FR + ++L+ATDV RG+DIP + HVI+Y
Sbjct: 593 AKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYD 652
Query: 621 VPRTSEIYIHRSGRTARANNEGL 643
+P+ E+Y HR GRT RA G+
Sbjct: 653 MPKHIEMYTHRIGRTGRAGKSGV 675
Score = 194 (73.4 bits), Expect = 5.6e-35, Sum P(3) = 5.6e-35
Identities = 42/103 (40%), Positives = 65/103 (63%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 319
YA+++APTRELA Q++ + Y +V +VGG S E+Q L+I C I++ATPGR
Sbjct: 391 YAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGC-EIVIATPGR 449
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 362
L + ++ + L + NY+V+DE DRMI+ G P++ +LD
Sbjct: 450 LIDCLERRYAVLNQC---NYVVLDEADRMIDMGFEPQVAGVLD 489
Score = 129 (50.5 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M W + + +++A+ + G+K P+ IQ +P L R D++G AETGSGKT AF +P
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR-DVIGIAETGSGKTAAFVLP 370
Query: 827 ILTGI 831
+L I
Sbjct: 371 MLAYI 375
Score = 129 (50.5 bits), Expect = 5.6e-35, Sum P(3) = 5.6e-35
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M W + + +++A+ + G+K P+ IQ +P L R D++G AETGSGKT AF +P
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR-DVIGIAETGSGKTAAFVLP 370
Query: 210 ILTGI 214
+L I
Sbjct: 371 MLAYI 375
Score = 119 (46.9 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGAL 1414
A+++APTRELA Q++ + Y +V +VGG S E+Q L+I C I++ATPG L
Sbjct: 392 AVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGC-EIVIATPGRL 450
Score = 75 (31.5 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
L + NY+V+DE DRMI+ G P++ +LD M S PE N +
Sbjct: 461 LNQCNYVVLDEADRMIDMGFEPQVAGVLD------------AMPSSNLKPE--N--EEEE 504
Query: 394 MTETSQPRQTFVFSATL 410
+ E R T++FSAT+
Sbjct: 505 LDEKKIYRTTYMFSATM 521
Score = 45 (20.9 bits), Expect = 4.9e-19, Sum P(3) = 4.9e-19
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 1214 LIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGL 1255
++ + ID+ + + K+ + + HR GRT RA G+
Sbjct: 635 VVGRGIDIPDVAHVINYDMPKHI-EMYTHRIGRTGRAGKSGV 675
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 203 (76.5 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 50/130 (38%), Positives = 79/130 (60%)
Query: 872 KTR-NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
K R N++ ALIL PTRELA Q+Q++++ G++ P+K A V GG+ Q++ + K IL
Sbjct: 68 KVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADIL 127
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
VATPGRL + L + + + ++ LV+DE DRM++ G ++ IL + + R
Sbjct: 128 VATPGRLMD---LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP-----EKR 179
Query: 991 QTFVFSATLT 1000
Q +FSAT +
Sbjct: 180 QNLLFSATFS 189
Score = 192 (72.6 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 59/185 (31%), Positives = 95/185 (51%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+ LVF + RL L + +H + +Q R + L F+ IL+ATD+AA
Sbjct: 245 QVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAA 304
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP-LYI--KMFNS 1195
RG+DIP + V+++ +P+ +E Y+HR GRT RA G + L+ + E P L+ ++ +
Sbjct: 305 RGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERLTQA 364
Query: 1196 LEKKVDLPDF-P---IDESVLS---LIKKRIDLAKSIEYL-ESK--IKKNRPDNWLHRSG 1245
L +V+L F P + ES L L K+ K +E E+K + +N+P HR
Sbjct: 365 LLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKAG-HRGQ 423
Query: 1246 RTARA 1250
T +A
Sbjct: 424 PTGQA 428
Score = 192 (72.6 bits), Expect = 2.8e-35, Sum P(3) = 2.8e-35
Identities = 49/136 (36%), Positives = 81/136 (59%)
Query: 255 KTR-NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
K R N++ ALIL PTRELA Q+Q++++ G++ P+K A V GG+ Q++ + K IL
Sbjct: 68 KVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADIL 127
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
VATPGRL + L + + + ++ LV+DE DRM++ G ++ IL + + R
Sbjct: 128 VATPGRLMD---LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP-----EKR 179
Query: 374 QTMIESGHFP-ELKNI 388
Q ++ S F E++ +
Sbjct: 180 QNLLFSATFSTEIREL 195
Score = 184 (69.8 bits), Expect = 1.9e-34, Sum P(3) = 1.9e-34
Identities = 46/167 (27%), Positives = 82/167 (49%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRT 547
T EI++L + +P + ++ +T+ + +K L + + + +
Sbjct: 187 TFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQV 246
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + RL L + +H + +Q R + L F+ IL+ATD+AARG
Sbjct: 247 LVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARG 306
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
+DIP + V+++ +P+ +E Y+HR GRT RA G + L+ + E P
Sbjct: 307 IDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAP 353
Score = 147 (56.8 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 44/136 (32%), Positives = 69/136 (50%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALIL PTRELA Q+Q++++ G++ P+K A V GG+ Q++ + K ILVATPG L
Sbjct: 76 ALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGRLM 135
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
A + LE + + D L DM +++ R+N L S
Sbjct: 136 DLYNQNAVKFDQLEILVL-DEADRML-----DMGFIRDIHKILKLLPEKRQNLLFSATFS 189
Query: 1476 SKRKEL-QSLLGKSVQ 1490
++ +EL + L+ V+
Sbjct: 190 TEIRELAKGLVNNPVE 205
Score = 130 (50.8 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
I++A+ +KG+ TP+ IQ +P A+LA KD++ AA+TG+GKT F +PIL
Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIP-AVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Score = 130 (50.8 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
I++A+ +KG+ TP+ IQ +P A+LA KD++ AA+TG+GKT F +PIL
Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIP-AVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Score = 70 (29.7 bits), Expect = 6.6e-24, Sum P(3) = 6.6e-24
Identities = 37/132 (28%), Positives = 64/132 (48%)
Query: 1202 LPDFPIDE-SVL---SLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTL 1257
L DF E +L + + ID+ + + + ++ K D ++HR GRT RA G +
Sbjct: 286 LADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAED-YVHRIGRTGRAGEVGKAI 344
Query: 1258 VLIESDEIP-LYI--KMFNSLEKKVDLPDF-P---IDESVLS---LIKKRIDLAKSIEYL 1307
L+ + E P L+ ++ +L +V+L F P + ES L L K+ K +E
Sbjct: 345 SLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGA 404
Query: 1308 -ESK--IKKNRP 1316
E+K + +N+P
Sbjct: 405 GENKGSVAENKP 416
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 203 (76.5 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 50/130 (38%), Positives = 79/130 (60%)
Query: 872 KTR-NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
K R N++ ALIL PTRELA Q+Q++++ G++ P+K A V GG+ Q++ + K IL
Sbjct: 68 KVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADIL 127
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
VATPGRL + L + + + ++ LV+DE DRM++ G ++ IL + + R
Sbjct: 128 VATPGRLMD---LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP-----EKR 179
Query: 991 QTFVFSATLT 1000
Q +FSAT +
Sbjct: 180 QNLLFSATFS 189
Score = 192 (72.6 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 59/185 (31%), Positives = 95/185 (51%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+ LVF + RL L + +H + +Q R + L F+ IL+ATD+AA
Sbjct: 245 QVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAA 304
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP-LYI--KMFNS 1195
RG+DIP + V+++ +P+ +E Y+HR GRT RA G + L+ + E P L+ ++ +
Sbjct: 305 RGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERLTQA 364
Query: 1196 LEKKVDLPDF-P---IDESVLS---LIKKRIDLAKSIEYL-ESK--IKKNRPDNWLHRSG 1245
L +V+L F P + ES L L K+ K +E E+K + +N+P HR
Sbjct: 365 LLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKAG-HRGQ 423
Query: 1246 RTARA 1250
T +A
Sbjct: 424 PTGQA 428
Score = 192 (72.6 bits), Expect = 2.8e-35, Sum P(3) = 2.8e-35
Identities = 49/136 (36%), Positives = 81/136 (59%)
Query: 255 KTR-NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
K R N++ ALIL PTRELA Q+Q++++ G++ P+K A V GG+ Q++ + K IL
Sbjct: 68 KVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADIL 127
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
VATPGRL + L + + + ++ LV+DE DRM++ G ++ IL + + R
Sbjct: 128 VATPGRLMD---LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP-----EKR 179
Query: 374 QTMIESGHFP-ELKNI 388
Q ++ S F E++ +
Sbjct: 180 QNLLFSATFSTEIREL 195
Score = 184 (69.8 bits), Expect = 1.9e-34, Sum P(3) = 1.9e-34
Identities = 46/167 (27%), Positives = 82/167 (49%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRT 547
T EI++L + +P + ++ +T+ + +K L + + + +
Sbjct: 187 TFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQV 246
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + RL L + +H + +Q R + L F+ IL+ATD+AARG
Sbjct: 247 LVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARG 306
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
+DIP + V+++ +P+ +E Y+HR GRT RA G + L+ + E P
Sbjct: 307 IDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAP 353
Score = 147 (56.8 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 44/136 (32%), Positives = 69/136 (50%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALIL PTRELA Q+Q++++ G++ P+K A V GG+ Q++ + K ILVATPG L
Sbjct: 76 ALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGRLM 135
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
A + LE + + D L DM +++ R+N L S
Sbjct: 136 DLYNQNAVKFDQLEILVL-DEADRML-----DMGFIRDIHKILKLLPEKRQNLLFSATFS 189
Query: 1476 SKRKEL-QSLLGKSVQ 1490
++ +EL + L+ V+
Sbjct: 190 TEIRELAKGLVNNPVE 205
Score = 130 (50.8 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
I++A+ +KG+ TP+ IQ +P A+LA KD++ AA+TG+GKT F +PIL
Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIP-AVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Score = 130 (50.8 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
I++A+ +KG+ TP+ IQ +P A+LA KD++ AA+TG+GKT F +PIL
Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIP-AVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Score = 70 (29.7 bits), Expect = 6.6e-24, Sum P(3) = 6.6e-24
Identities = 37/132 (28%), Positives = 64/132 (48%)
Query: 1202 LPDFPIDE-SVL---SLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTL 1257
L DF E +L + + ID+ + + + ++ K D ++HR GRT RA G +
Sbjct: 286 LADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAED-YVHRIGRTGRAGEVGKAI 344
Query: 1258 VLIESDEIP-LYI--KMFNSLEKKVDLPDF-P---IDESVLS---LIKKRIDLAKSIEYL 1307
L+ + E P L+ ++ +L +V+L F P + ES L L K+ K +E
Sbjct: 345 SLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGA 404
Query: 1308 -ESK--IKKNRP 1316
E+K + +N+P
Sbjct: 405 GENKGSVAENKP 416
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 234 (87.4 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 64/225 (28%), Positives = 115/225 (51%)
Query: 1025 SIKRLQDLLNIKSPKIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFI--LQHPGRTL 1081
+++RL +K P IV + T + T+T++ I+ DEK S++ FI + + +
Sbjct: 432 AVRRLAQSY-LKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDSMSPKDKVI 490
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
+F + + L+ L + + S LH + Q R + L F+ IL+ATD+A+RGL
Sbjct: 491 IFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIATDLASRGL 550
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
D+ + HV +Y PR E Y+HR GRT RA G+++ LI ++ + ++ N LE+
Sbjct: 551 DVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELINILERA-- 608
Query: 1202 LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGR 1246
+ + E ++S+ ++ Y +K+KK + W G+
Sbjct: 609 --NQSVPEDLVSMAER---------YKANKLKKETENKWGRPQGK 642
Score = 216 (81.1 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 51/154 (33%), Positives = 84/154 (54%)
Query: 502 IKSPKIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFI--LQHPGRTLVFCNSISSVK 558
+K P IV + T + T+T++ I+ DEK S++ FI + + ++F + +
Sbjct: 441 LKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDSMSPKDKVIIFVSRKAVAD 500
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
L+ L + + S LH + Q R + L F+ IL+ATD+A+RGLD+ + HV +
Sbjct: 501 HLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIATDLASRGLDVHDVTHVYN 560
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
Y PR E Y+HR GRT RA G+++ LI ++
Sbjct: 561 YDFPRNIEEYVHRVGRTGRAGRTGVSITLITRND 594
Score = 193 (73.0 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 48/129 (37%), Positives = 74/129 (57%)
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
+++ RN L+L PTRELA+QV + Y +K C+ GG + Q++ L+K I
Sbjct: 309 LQRARNGPGMLVLTPTRELALQVDAECSEYS-YRGLKSVCIYGGGDRDGQIKDLSKGADI 367
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
++ATPGRL + +Q+ +F L I YLV+DE D+M++ G P++ IL +
Sbjct: 368 IIATPGRLHD-LQMNNF--VYLKSITYLVLDEADKMLDMGFEPQIMKIL-----LDVRPD 419
Query: 990 RQTFVFSAT 998
RQT + SAT
Sbjct: 420 RQTVMTSAT 428
Score = 193 (73.0 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 47/131 (35%), Positives = 75/131 (57%)
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
+++ RN L+L PTRELA+QV + Y +K C+ GG + Q++ L+K I
Sbjct: 309 LQRARNGPGMLVLTPTRELALQVDAECSEYS-YRGLKSVCIYGGGDRDGQIKDLSKGADI 367
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
++ATPGRL + +Q+ +F L I YLV+DE D+M++ G P++ IL +
Sbjct: 368 IIATPGRLHD-LQMNNF--VYLKSITYLVLDEADKMLDMGFEPQIMKIL-----LDVRPD 419
Query: 373 RQTMIESGHFP 383
RQT++ S +P
Sbjct: 420 RQTVMTSATWP 430
Score = 117 (46.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL-- 1414
L+L PTRELA+QV + Y +K C+ GG + Q++ L+K I++ATPG L
Sbjct: 319 LVLTPTRELALQVDAECSEYS-YRGLKSVCIYGGGDRDGQIKDLSKGADIIIATPGRLHD 377
Query: 1415 -SLKRIDLAKSIEYL 1428
+ KSI YL
Sbjct: 378 LQMNNFVYLKSITYL 392
Score = 105 (42.0 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
PE ++R + + GF+ PT IQS P +L D++G A+TG+GKTL++ +P
Sbjct: 250 PE-VMRNIEKAGFQKPTPIQSQAWP-IILQGIDLIGVAQTGTGKTLSYLMP 298
Score = 105 (42.0 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
PE ++R + + GF+ PT IQS P +L D++G A+TG+GKTL++ +P
Sbjct: 250 PE-VMRNIEKAGFQKPTPIQSQAWP-IILQGIDLIGVAQTGTGKTLSYLMP 298
Score = 74 (31.1 bits), Expect = 5.1e-21, Sum P(4) = 5.1e-21
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+ ++HR GRT RA G+++ LI ++ + ++ N LE+ + + E ++S+ ++
Sbjct: 568 EEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELINILERA----NQSVPEDLVSMAER- 622
Query: 1298 IDLAKSIEYLESKIKKNRPDNW 1319
Y +K+KK + W
Sbjct: 623 --------YKANKLKKETENKW 636
Score = 56 (24.8 bits), Expect = 5.1e-21, Sum P(4) = 5.1e-21
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 436 SIKRLQDLLNIKSPKIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCE 494
+++RL +K P IV + T + T+T++ I+ DEK S++ FI ++
Sbjct: 432 AVRRLAQSY-LKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFI-----DSMSP 485
Query: 495 EIQDLLNIKSPKIVD-LTEKIGITKTLTES 523
+ + ++ + + D L+ +GI + ES
Sbjct: 486 KDKVIIFVSRKAVADHLSSDLGIRRISVES 515
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 221 (82.9 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 55/184 (29%), Positives = 96/184 (52%)
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQLLTM 1099
VD +I + L + ++C + + LY F+ ++ + + VF +S ++VK +LL
Sbjct: 328 VDDEREISTVEGLEQGYVVCPSERRFLLLYTFLKKNLSKKIIVFLSSCNAVKYTAELLNY 387
Query: 1100 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
+ L LH Q++R F + IL+ TDVAARGLDIP ++ +I Y P +
Sbjct: 388 IDIPVLELHGRQKQQKRTNTFYEFVNAEKGILICTDVAARGLDIPSVDWIIQYDPPDDPK 447
Query: 1160 IYIHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLEKKVDLPDFPIDESVLSLIK 1216
YIHR GRTAR +G L+ + E+ Y+K+ KV L ++ +S ++ ++
Sbjct: 448 EYIHRVGRTARGVGKKGRALLFLLPKELGFLKYLKL-----AKVPLNEYEFPKSKIANVQ 502
Query: 1217 KRID 1220
+++
Sbjct: 503 DQLE 506
Score = 209 (78.6 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 48/148 (32%), Positives = 78/148 (52%)
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQLLTM 566
VD +I + L + ++C + + LY F+ ++ + + VF +S ++VK +LL
Sbjct: 328 VDDEREISTVEGLEQGYVVCPSERRFLLLYTFLKKNLSKKIIVFLSSCNAVKYTAELLNY 387
Query: 567 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626
+ L LH Q++R F + IL+ TDVAARGLDIP ++ +I Y P +
Sbjct: 388 IDIPVLELHGRQKQQKRTNTFYEFVNAEKGILICTDVAARGLDIPSVDWIIQYDPPDDPK 447
Query: 627 IYIHRSGRTARA-NNEGLTVVLIESDEI 653
YIHR GRTAR +G ++ + E+
Sbjct: 448 EYIHRVGRTARGVGKKGRALLFLLPKEL 475
Score = 188 (71.2 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 50/129 (38%), Positives = 72/129 (55%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
K RN +I++PTRELA+Q+ + KY V+GG S + + L K ++LV
Sbjct: 187 KPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKPEEERLEKGVNLLV 246
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + +Q +T+ K L+IDE DR++E G E+ I+ +V T RQ
Sbjct: 247 ATPGRLLDHLQNTKGFITKNLKC--LIIDEADRILEVGFEEEMHQIIKKVPKT-----RQ 299
Query: 992 TFVFSATLT 1000
T +FSAT T
Sbjct: 300 TMLFSATQT 308
Score = 173 (66.0 bits), Expect = 6.1e-35, Sum P(3) = 6.1e-35
Identities = 47/125 (37%), Positives = 69/125 (55%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
K RN +I++PTRELA+Q+ + KY V+GG S + + L K ++LV
Sbjct: 187 KPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKPEEERLEKGVNLLV 246
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + +Q +T+ K L+IDE DR++E G E+ I+ +V T RQ
Sbjct: 247 ATPGRLLDHLQNTKGFITKNLKC--LIIDEADRILEVGFEEEMHQIIKKVPKT-----RQ 299
Query: 375 TMIES 379
TM+ S
Sbjct: 300 TMLFS 304
Score = 122 (48.0 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 47/164 (28%), Positives = 76/164 (46%)
Query: 69 TVSSXXXXXXXXQNPSQV-EVSELSANTNDPDDQ-----VNKTEEIQSDEPSSXXXXXXX 122
T ++ Q+ +Q E+ EL++ + Q V K EE + P
Sbjct: 27 TTTASKKVKQTKQSKAQAKEIQELASTPSVKQIQSQKVLVPKLEETKPITPPDQEEEDQE 86
Query: 123 XXXXTYTSANKELLEVDTSNNEDMFVQMA-EWVKF-NIP--ETIIRALYQKGFKTPTKIQ 178
E + +T N + + ++ E ++F N+P E +++ + GFK T IQ
Sbjct: 87 EEEQEQEEEENENNDNNTGNVSEKELGISKESIEFSNLPIEENTKKSIEEMGFKKMTPIQ 146
Query: 179 SM-VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
+ ++P LL KD++GAA TGSGKTLAF IP + +V P
Sbjct: 147 AKSILP--LLEGKDLLGAARTGSGKTLAFLIPAIEVLVKSNFKP 188
Score = 121 (47.7 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 47/164 (28%), Positives = 76/164 (46%)
Query: 686 TVSSXXXXXXXXQNPSQV-EVSELSANTNDPDDQ-----VNKTEEIQSDEPHSXXXXXXX 739
T ++ Q+ +Q E+ EL++ + Q V K EE + P
Sbjct: 27 TTTASKKVKQTKQSKAQAKEIQELASTPSVKQIQSQKVLVPKLEETKPITPPDQEEEDQE 86
Query: 740 XXXXTYTSANKELLEVDTSNNEDMFVQMA-EWVKF-NIP--ETIIRALYQKGFKTPTKIQ 795
E + +T N + + ++ E ++F N+P E +++ + GFK T IQ
Sbjct: 87 EEEQEQEEEENENNDNNTGNVSEKELGISKESIEFSNLPIEENTKKSIEEMGFKKMTPIQ 146
Query: 796 SM-VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
+ ++P LL KD++GAA TGSGKTLAF IP + +V P
Sbjct: 147 AKSILP--LLEGKDLLGAARTGSGKTLAFLIPAIEVLVKSNFKP 188
Score = 104 (41.7 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 1336 LIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK 1395
LI ++L+ + R +I++PTRELA+Q+ + KY V+GG S +
Sbjct: 174 LIPAIEVLVKSNFKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKP 233
Query: 1396 QLRILNKCPHILVATPGAL 1414
+ L K ++LVATPG L
Sbjct: 234 EEERLEKGVNLLVATPGRL 252
Score = 62 (26.9 bits), Expect = 8.0e-20, Sum P(3) = 8.0e-20
Identities = 18/79 (22%), Positives = 41/79 (51%)
Query: 1224 SIEYLESKIKKNRPDNWLHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLEKKVD 1280
S++++ + P ++HR GRTAR +G L+ + E+ Y+K+ KV
Sbjct: 433 SVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELGFLKYLKL-----AKVP 487
Query: 1281 LPDFPIDESVLSLIKKRID 1299
L ++ +S ++ ++ +++
Sbjct: 488 LNEYEFPKSKIANVQDQLE 506
Score = 50 (22.7 bits), Expect = 3.3e-22, Sum P(3) = 3.3e-22
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399
L++ R+++ H K + + ++E G E+ I+ +V T
Sbjct: 244 LLVATPGRLLD--HLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKT---- 297
Query: 400 PRQTFVFSATLT 411
RQT +FSAT T
Sbjct: 298 -RQTMLFSATQT 308
Score = 39 (18.8 bits), Expect = 8.1e-18, Sum P(4) = 8.1e-18
Identities = 18/105 (17%), Positives = 43/105 (40%)
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
VD +I + L + ++C + + LY F+ ++ + + + +K +L
Sbjct: 328 VDDEREISTVEGLEQGYVVCPSERRFLLLYTFLKKNLSKKIIVFLSSCNAVKYT--AELL 385
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556
I I + E K ++ + Y F+ G ++ C +++
Sbjct: 386 NYIDIP--VLELHGRQKQQKRTNTFYEFVNAEKG--ILICTDVAA 426
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 231 (86.4 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 54/168 (32%), Positives = 98/168 (58%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHD---EKDSYLYYFILQ-HP 544
T+ +E++DL +++K+P + + + L + I + + ++++ + +++
Sbjct: 370 TMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFT 429
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
++F + R+ LL +L LH +++Q QRL+ L RF+D+ IL+ATDVA
Sbjct: 430 DHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 489
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
ARGLDI G++ VI++ +P T + Y+HR GRTARA G +V L+ +E
Sbjct: 490 ARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEE 537
Score = 217 (81.4 bits), Expect = 2.4e-36, Sum P(3) = 2.4e-36
Identities = 52/146 (35%), Positives = 85/146 (58%)
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F + R+ LL +L LH +++Q QRL+ L RF+D+ IL+ATDVAARG
Sbjct: 433 MLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARG 492
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
LDI G++ VI++ +P T + Y+HR GRTARA G ++ L+ +E + ++ + + V
Sbjct: 493 LDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPV 552
Query: 1201 DLPDFPIDESVLSLIKKRID-LAKSI 1225
P D V+ + +I+ L K +
Sbjct: 553 KARILPQD--VILKFRDKIEKLEKDV 576
Score = 185 (70.2 bits), Expect = 2.4e-36, Sum P(3) = 2.4e-36
Identities = 46/122 (37%), Positives = 67/122 (54%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L PTREL IQV + ++ + VGG+ + Q L P IL+ATPGRL +
Sbjct: 259 LVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID 318
Query: 940 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ FHL+ I L++DE DRM++ ++K I+ R+ S RQT +FSAT
Sbjct: 319 HLHNCPSFHLSS---IEVLILDEADRMLDEYFEEQMKEII-RMC----SHHRQTMLFSAT 370
Query: 999 LT 1000
+T
Sbjct: 371 MT 372
Score = 170 (64.9 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 50/148 (33%), Positives = 74/148 (50%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L PTREL IQV + ++ + VGG+ + Q L P IL+ATPGRL +
Sbjct: 259 LVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID 318
Query: 323 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ FHL+ I L++DE DRM++ ++K I+ R+ S RQTM+ S
Sbjct: 319 HLHNCPSFHLSS---IEVLILDEADRMLDEYFEEQMKEII-RMC----SHHRQTMLFSAT 370
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSAT 409
+ L V++ P + FV S T
Sbjct: 371 MTDEVKDLASVSL---KNPVRIFVNSNT 395
Score = 133 (51.9 bits), Expect = 2.4e-36, Sum P(3) = 2.4e-36
Identities = 36/133 (27%), Positives = 58/133 (43%)
Query: 89 SELSANTNDPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTYTSANKELLEVDTSNN--EDM 146
S+L N +D+ +E + SS K+ + + ED
Sbjct: 118 SDLKGQENPGEDEAGSKDEDSETDYSSEDEEILTKADTLKVKEKKKKKKGQAAGGFFEDA 177
Query: 147 --FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
+ + + N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT
Sbjct: 178 SEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTA 236
Query: 205 AFGIPILTGIVNK 217
AF +P+L ++ K
Sbjct: 237 AFALPVLERLIYK 249
Score = 131 (51.2 bits), Expect = 3.8e-36, Sum P(3) = 3.8e-36
Identities = 38/135 (28%), Positives = 60/135 (44%)
Query: 706 SELSANTNDPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFV 765
S+L N +D+ +E S+ +S T K+ + + F
Sbjct: 118 SDLKGQENPGEDEAGSKDE-DSETDYSSEDEEILTKADTLKVKEKKKKKKGQAAG-GFFE 175
Query: 766 QMAEWVK------FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGK 819
+E+ K N+ +++A+ GFK PT IQ +P LL KDI A TG+GK
Sbjct: 176 DASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGK 234
Query: 820 TLAFGIPILTGIVNK 834
T AF +P+L ++ K
Sbjct: 235 TAAFALPVLERLIYK 249
Score = 118 (46.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 36/143 (25%), Positives = 66/143 (46%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
LI++ R + L+L PTREL IQV + ++ + VGG+ + Q L
Sbjct: 246 LIYKPRQAAVT-RVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 304
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIK-KNRPDNWLEKAAKDMXXXXXXENLIQPK 1461
P IL+ATPG L + + S ++ + D L++ ++ + +I+
Sbjct: 305 APDILIATPGRL-IDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQM-----KEIIRMC 358
Query: 1462 ANSRENALMSKALVSKRKELQSL 1484
++ R+ L S + + K+L S+
Sbjct: 359 SHHRQTMLFSATMTDEVKDLASV 381
Score = 67 (28.6 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 30/131 (22%), Positives = 61/131 (46%)
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR-IDLAKSIEYLESKIKK 1234
L L+ ++ E+ + LE D ID V + + R +D+ + ++ + +
Sbjct: 449 LGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMP 507
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N +++HR GRTARA G ++ L+ +E + ++ + + V P D V+
Sbjct: 508 NTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQD--VILKF 565
Query: 1295 KKRID-LAKSI 1304
+ +I+ L K +
Sbjct: 566 RDKIEKLEKDV 576
Score = 44 (20.5 bits), Expect = 9.2e-22, Sum P(3) = 9.2e-22
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 398 SQPRQTFVFSATLT 411
S RQT +FSAT+T
Sbjct: 359 SHHRQTMLFSATMT 372
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 218 (81.8 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 57/159 (35%), Positives = 87/159 (54%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGIT--KTLTESKILCKHDEKDSY--LYYFILQH- 543
T E+IQ + + +P +V K +T K E D+K L +L+H
Sbjct: 184 TFPEQIQSIAKQIMYNPVMV----KAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHK 239
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
P +VFCN+ +++ L L S L LH + QR R + L +F +++ +L+ATDV
Sbjct: 240 PESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 299
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
AARGLDI ++ V +YHV +E++IHR GRT RA ++G
Sbjct: 300 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 338
Score = 215 (80.7 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 51/135 (37%), Positives = 76/135 (56%)
Query: 1046 KIGIT--KTLTESKILCKHDEKDSY--LYYFILQH-PGRTLVFCNSISSVKRLTQLLTML 1100
K +T K E D+K L +L+H P +VFCN+ +++ L L
Sbjct: 204 KAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPESAVVFCNTKRETQKVADELEGL 263
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
S L LH + QR R + L +F +++ +L+ATDVAARGLDI ++ V +YHV +E+
Sbjct: 264 GFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEV 323
Query: 1161 YIHRSGRTARANNEG 1175
+IHR GRT RA ++G
Sbjct: 324 HIHRIGRTGRAGSKG 338
Score = 188 (71.2 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 51/139 (36%), Positives = 78/139 (56%)
Query: 257 RNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
R ++ L+L PTRELA QV I L G + VKV + GG+ Q+ L HI+V
Sbjct: 67 RFRIQTLVLCPTRELADQVAQEIRTLARGIHN-VKVLTLCGGVPMGPQIGSLEHGAHIIV 125
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
TPGR+ + + L+ L N LV+DE DRM+E G P+L I++ ++ + RQ
Sbjct: 126 GTPGRIVDHLDRNRLDLSNL---NMLVLDEADRMLEMGFQPQLDAIIE-----QSPRERQ 177
Query: 375 TMIESGHFPE-LKNILDRV 392
T++ S FPE +++I ++
Sbjct: 178 TLLFSATFPEQIQSIAKQI 196
Score = 186 (70.5 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
Identities = 50/127 (39%), Positives = 71/127 (55%)
Query: 874 RNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
R ++ L+L PTRELA QV I L G + VKV + GG+ Q+ L HI+V
Sbjct: 67 RFRIQTLVLCPTRELADQVAQEIRTLARGIHN-VKVLTLCGGVPMGPQIGSLEHGAHIIV 125
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
TPGR+ + + L+ L N LV+DE DRM+E G P+L I++ ++ + RQ
Sbjct: 126 GTPGRIVDHLDRNRLDLSNL---NMLVLDEADRMLEMGFQPQLDAIIE-----QSPRERQ 177
Query: 992 TFVFSAT 998
T +FSAT
Sbjct: 178 TLLFSAT 184
Score = 111 (44.1 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
++ L G+ T IQ+ +P A+LA +D++G +TGSGKT AFG+ G++NKL+
Sbjct: 12 LLENLSSMGYNEMTPIQAQSLP-AILAGEDVIGQGKTGSGKTAAFGL----GLLNKLD 64
Score = 111 (44.1 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
++ L G+ T IQ+ +P A+LA +D++G +TGSGKT AFG+ G++NKL+
Sbjct: 12 LLENLSSMGYNEMTPIQAQSLP-AILAGEDVIGQGKTGSGKTAAFGL----GLLNKLD 64
Score = 101 (40.6 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 31/78 (39%), Positives = 40/78 (51%)
Query: 1351 RYSWDALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 1408
R+ L+L PTRELA QV I L G + VKV + GG+ Q+ L HI+V
Sbjct: 67 RFRIQTLVLCPTRELADQVAQEIRTLARGIHN-VKVLTLCGGVPMGPQIGSLEHGAHIIV 125
Query: 1409 ATPGA----LSLKRIDLA 1422
TPG L R+DL+
Sbjct: 126 GTPGRIVDHLDRNRLDLS 143
Score = 54 (24.1 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 17/71 (23%), Positives = 36/71 (50%)
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS 398
++++ R+++ H + L + M + + M+E G P+L I++ ++
Sbjct: 122 HIIVGTPGRIVD--HLDRNRLDLSNLNMLVLDEADR-MLEMGFQPQLDAIIE-----QSP 173
Query: 399 QPRQTFVFSAT 409
+ RQT +FSAT
Sbjct: 174 RERQTLLFSAT 184
Score = 46 (21.3 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 1241 LHRSGRTARANNEG 1254
+HR GRT RA ++G
Sbjct: 325 IHRIGRTGRAGSKG 338
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 218 (81.8 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 57/159 (35%), Positives = 87/159 (54%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGIT--KTLTESKILCKHDEKDSY--LYYFILQH- 543
T E+IQ + + +P +V K +T K E D+K L +L+H
Sbjct: 184 TFPEQIQSIAKQIMYNPVMV----KAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHK 239
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
P +VFCN+ +++ L L S L LH + QR R + L +F +++ +L+ATDV
Sbjct: 240 PESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 299
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
AARGLDI ++ V +YHV +E++IHR GRT RA ++G
Sbjct: 300 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 338
Score = 215 (80.7 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 51/135 (37%), Positives = 76/135 (56%)
Query: 1046 KIGIT--KTLTESKILCKHDEKDSY--LYYFILQH-PGRTLVFCNSISSVKRLTQLLTML 1100
K +T K E D+K L +L+H P +VFCN+ +++ L L
Sbjct: 204 KAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPESAVVFCNTKRETQKVADELEGL 263
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
S L LH + QR R + L +F +++ +L+ATDVAARGLDI ++ V +YHV +E+
Sbjct: 264 GFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEV 323
Query: 1161 YIHRSGRTARANNEG 1175
+IHR GRT RA ++G
Sbjct: 324 HIHRIGRTGRAGSKG 338
Score = 188 (71.2 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 51/139 (36%), Positives = 78/139 (56%)
Query: 257 RNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
R ++ L+L PTRELA QV I L G + VKV + GG+ Q+ L HI+V
Sbjct: 67 RFRIQTLVLCPTRELADQVAQEIRTLARGIHN-VKVLTLCGGVPMGPQIGSLEHGAHIIV 125
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
TPGR+ + + L+ L N LV+DE DRM+E G P+L I++ ++ + RQ
Sbjct: 126 GTPGRIVDHLDRNRLDLSNL---NMLVLDEADRMLEMGFQPQLDAIIE-----QSPRERQ 177
Query: 375 TMIESGHFPE-LKNILDRV 392
T++ S FPE +++I ++
Sbjct: 178 TLLFSATFPEQIQSIAKQI 196
Score = 186 (70.5 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
Identities = 50/127 (39%), Positives = 71/127 (55%)
Query: 874 RNKLYALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
R ++ L+L PTRELA QV I L G + VKV + GG+ Q+ L HI+V
Sbjct: 67 RFRIQTLVLCPTRELADQVAQEIRTLARGIHN-VKVLTLCGGVPMGPQIGSLEHGAHIIV 125
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
TPGR+ + + L+ L N LV+DE DRM+E G P+L I++ ++ + RQ
Sbjct: 126 GTPGRIVDHLDRNRLDLSNL---NMLVLDEADRMLEMGFQPQLDAIIE-----QSPRERQ 177
Query: 992 TFVFSAT 998
T +FSAT
Sbjct: 178 TLLFSAT 184
Score = 111 (44.1 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
++ L G+ T IQ+ +P A+LA +D++G +TGSGKT AFG+ G++NKL+
Sbjct: 12 LLENLSSMGYNEMTPIQAQSLP-AILAGEDVIGQGKTGSGKTAAFGL----GLLNKLD 64
Score = 111 (44.1 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
++ L G+ T IQ+ +P A+LA +D++G +TGSGKT AFG+ G++NKL+
Sbjct: 12 LLENLSSMGYNEMTPIQAQSLP-AILAGEDVIGQGKTGSGKTAAFGL----GLLNKLD 64
Score = 101 (40.6 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 31/78 (39%), Positives = 40/78 (51%)
Query: 1351 RYSWDALILAPTRELAIQVQNHI--LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 1408
R+ L+L PTRELA QV I L G + VKV + GG+ Q+ L HI+V
Sbjct: 67 RFRIQTLVLCPTRELADQVAQEIRTLARGIHN-VKVLTLCGGVPMGPQIGSLEHGAHIIV 125
Query: 1409 ATPGA----LSLKRIDLA 1422
TPG L R+DL+
Sbjct: 126 GTPGRIVDHLDRNRLDLS 143
Score = 54 (24.1 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 17/71 (23%), Positives = 36/71 (50%)
Query: 339 YLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS 398
++++ R+++ H + L + M + + M+E G P+L I++ ++
Sbjct: 122 HIIVGTPGRIVD--HLDRNRLDLSNLNMLVLDEADR-MLEMGFQPQLDAIIE-----QSP 173
Query: 399 QPRQTFVFSAT 409
+ RQT +FSAT
Sbjct: 174 RERQTLLFSAT 184
Score = 46 (21.3 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 1241 LHRSGRTARANNEG 1254
+HR GRT RA ++G
Sbjct: 325 IHRIGRTGRAGSKG 338
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 263 (97.6 bits), Expect = 2.6e-36, Sum P(3) = 2.6e-36
Identities = 65/202 (32%), Positives = 118/202 (58%)
Query: 1027 KRLQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQH-PGRTL 1081
K ++DL L++K+P+ + + EK + TL ++ I+C+ +K S LY F+ H +++
Sbjct: 258 KSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSI 317
Query: 1082 VFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
VF +S V+ L ++ L+ S L LH Q +R++ + F + +++L ATD+AAR
Sbjct: 318 VFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRSAVLFATDIAAR 377
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG-LTLVLIESDEIPLYIKMFNSLEK 1198
GLD P + V+ + P + YIHR+GRTAR +G L+L+ S+E + ++ L+K
Sbjct: 378 GLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGMVQQL---LQK 434
Query: 1199 KVDLPDFPIDESVLSLIKKRID 1220
KV + + I+ L ++K+++
Sbjct: 435 KVPVKEIKINPEKLIDVQKKLE 456
Score = 243 (90.6 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 57/170 (33%), Positives = 100/170 (58%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQH-PG 545
T + ++DL L++K+P+ + + EK + TL ++ I+C+ +K S LY F+ H
Sbjct: 255 TQTKSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKK 314
Query: 546 RTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++VF +S V+ L ++ L+ S L LH Q +R++ + F + +++L ATD+
Sbjct: 315 KSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRSAVLFATDI 374
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG-LTVVLIESDE 652
AARGLD P + V+ + P + YIHR+GRTAR +G ++L+ S+E
Sbjct: 375 AARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEE 424
Score = 154 (59.3 bits), Expect = 2.6e-36, Sum P(3) = 2.6e-36
Identities = 43/125 (34%), Positives = 65/125 (52%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L LI++PTRELA Q + GK ++GG + + +N +ILV TPGR
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200
Query: 937 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L + + + FH T L LV+DE DR+++ G + I++ + + RQT +F
Sbjct: 201 LLQHMDETICFHATNL---QMLVLDEADRILDMGFADTMNAIIENLP-----KKRQTLLF 252
Query: 996 SATLT 1000
SAT T
Sbjct: 253 SATQT 257
Score = 138 (53.6 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 41/132 (31%), Positives = 67/132 (50%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L LI++PTRELA Q + GK ++GG + + +N +ILV TPGR
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200
Query: 320 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
L + + + FH T L LV+DE DR+++ G + I++ + + RQT++
Sbjct: 201 LLQHMDETICFHATNL---QMLVLDEADRILDMGFADTMNAIIENLP-----KKRQTLLF 252
Query: 379 SGHFPELKNILD 390
S + K++ D
Sbjct: 253 SA--TQTKSVKD 262
Score = 118 (46.6 bits), Expect = 2.6e-36, Sum P(3) = 2.6e-36
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 750 KELLEVDTSNNEDMFV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
+E + T N E + V ++ + F + + ++ L + ++ T+IQ + AL KD
Sbjct: 50 REAISRLTQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KD 108
Query: 809 IVGAAETGSGKTLAFGIPILTGI 831
++GAA+TGSGKTLAF +P+L +
Sbjct: 109 VLGAAKTGSGKTLAFLVPVLEAL 131
Score = 118 (46.6 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 133 KELLEVDTSNNEDMFV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
+E + T N E + V ++ + F + + ++ L + ++ T+IQ + AL KD
Sbjct: 50 REAISRLTQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KD 108
Query: 192 IVGAAETGSGKTLAFGIPILTGI 214
++GAA+TGSGKTLAF +P+L +
Sbjct: 109 VLGAAKTGSGKTLAFLVPVLEAL 131
Score = 95 (38.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 38/131 (29%), Positives = 59/131 (45%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LI++PTRELA Q + GK ++GG + + +N +ILV TPG L L
Sbjct: 145 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRL-L 202
Query: 1417 KRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKA 1473
+ +D ++I + + ++ + D L+ D ENL PK R+ L S
Sbjct: 203 QHMD--ETICFHATNLQMLVLDEADRILDMGFAD-TMNAIIENL--PK--KRQTLLFSAT 255
Query: 1474 LVSKRKELQSL 1484
K+L L
Sbjct: 256 QTKSVKDLARL 266
Score = 80 (33.2 bits), Expect = 6.2e-18, Sum P(4) = 6.2e-18
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 1238 DNWLHRSGRTARANNEG-LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
+ ++HR+GRTAR +G L+L+ S+E + ++ L+KKV + + I+ L ++K
Sbjct: 397 NTYIHRAGRTARYKEDGEALLILLPSEEKGMVQQL---LQKKVPVKEIKINPEKLIDVQK 453
Query: 1297 RID 1299
+++
Sbjct: 454 KLE 456
Score = 72 (30.4 bits), Expect = 6.2e-18, Sum P(4) = 6.2e-18
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 438 KRLQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQHPGR--- 490
K ++DL L++K+P+ + + EK + TL ++ I+C+ +K S LY F+ H +
Sbjct: 258 KSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSI 317
Query: 491 ---TLCEEIQDLLNI 502
+ C+E+Q L +
Sbjct: 318 VFFSSCKEVQYLYRV 332
Score = 42 (19.8 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 1455 ENLIQPKANSRENALMSKALVSKRKELQSLLGK 1487
+ L+Q K +E + + L+ +K+L+S L +
Sbjct: 429 QQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQ 461
Score = 38 (18.4 bits), Expect = 6.9e-22, Sum P(4) = 6.9e-22
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 401 RQTFVFSATLT 411
RQT +FSAT T
Sbjct: 247 RQTLLFSATQT 257
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 227 (85.0 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 58/173 (33%), Positives = 91/173 (52%)
Query: 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKT--LTESKILCKHDEK---DSYLYYFILQ-HP 544
T+ EE+++L+ + K + L+ + LTE + + + ++ L +
Sbjct: 353 TMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTFK 412
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+ ++F + + RL L + LH ++ Q QRL +L+ FR Q L+ATDVA
Sbjct: 413 SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVA 472
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI-ESDEIPLK 656
ARGLDI G++ VI+Y PR + Y+HR GRTARA EG V + +SD LK
Sbjct: 473 ARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLK 525
Score = 218 (81.8 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 50/130 (38%), Positives = 76/130 (58%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+ ++F + + RL L + LH ++ Q QRL +L+ FR Q L+ATDVAA
Sbjct: 414 KVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAA 473
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI-ESDEIPLYI---KMFN 1194
RGLDI G++ VI+Y PR + Y+HR GRTARA EG + + +SD L + K+ +
Sbjct: 474 RGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGS 533
Query: 1195 SLEKKVDLPD 1204
L+ +V +P+
Sbjct: 534 KLKSRV-IPE 542
Score = 199 (75.1 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 44/121 (36%), Positives = 76/121 (62%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LIL PTRELA+Q+ + I + ++T +K +VGG+S +Q +L P I+VATPGR+ +
Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
++ + +L + L++DE DR++++G E+ ++ R+ + RQT +FSAT+
Sbjct: 302 HLR--NSMSVDLDDLAVLILDEADRLLQTGFATEITELV-RLC----PKRRQTMLFSATM 354
Query: 1000 T 1000
T
Sbjct: 355 T 355
Score = 182 (69.1 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 42/122 (34%), Positives = 73/122 (59%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LIL PTRELA+Q+ + I + ++T +K +VGG+S +Q +L P I+VATPGR+ +
Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ + +L + L++DE DR++++G E+ ++ R+ + RQTM+ S
Sbjct: 302 HLR--NSMSVDLDDLAVLILDEADRLLQTGFATEITELV-RLC----PKRRQTMLFSATM 354
Query: 383 PE 384
E
Sbjct: 355 TE 356
Score = 143 (55.4 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 42/151 (27%), Positives = 78/151 (51%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L+F + + ++ LIL PTRELA+Q+ + I + ++T +K +VGG+S +Q +L
Sbjct: 229 LLFRPKRV-FATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRS 287
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXE--NLIQP 1460
P I+VATPG + + + + S++ + + L++A + + E L++
Sbjct: 288 MPDIVVATPGRM-IDHLRNSMSVDLDDLAVLI------LDEADRLLQTGFATEITELVRL 340
Query: 1461 KANSRENALMSKALVSKRKELQSL-LGKSVQ 1490
R+ L S + + KEL L L K ++
Sbjct: 341 CPKRRQTMLFSATMTEEVKELVKLSLNKPLR 371
Score = 118 (46.6 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+++ N+ ++RA G+K PT IQ+ +P AL R D+ +A TGSGKT AF +P L
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR-DLCASAITGSGKTAAFALPTL 226
Score = 118 (46.6 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+++ N+ ++RA G+K PT IQ+ +P AL R D+ +A TGSGKT AF +P L
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR-DLCASAITGSGKTAAFALPTL 226
Score = 72 (30.4 bits), Expect = 4.5e-21, Sum P(3) = 4.5e-21
Identities = 29/105 (27%), Positives = 54/105 (51%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLI-ESDEIPLYI---KMFNSLEKKVDLPDFPIDESVLSL 1293
D+++HR GRTARA EG + + +SD L + K+ + L+ +V +P+ +S++
Sbjct: 494 DSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRV-IPE----QSIVKW 548
Query: 1294 IKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQ 1338
+ ID + +Y + I R + L KA + EN+++
Sbjct: 549 -SQIIDEMED-QY-SAVISAERDERALRKAEMEFAKA---ENMLE 587
Score = 42 (19.8 bits), Expect = 4.8e-20, Sum P(3) = 4.8e-20
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 401 RQTFVFSATLT 411
RQT +FSAT+T
Sbjct: 345 RQTMLFSATMT 355
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 211 (79.3 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 59/199 (29%), Positives = 95/199 (47%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PGRTLVF 1083
IK+L + P+++ + + +T E +++ D F++ P ++F
Sbjct: 193 IKKLAKRY-MDEPQMIQVQSE-EVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIF 250
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
C + +L L L + LH + Q +R + + FR+ L+ATDVAARGLD+
Sbjct: 251 CRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDV 310
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES-DEIPLYIKMFNSLEKKVDL 1202
G+ HV +Y +P E YIHR GRT RA GL + + + DE K +EK +
Sbjct: 311 DGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDE-----KHLEEIEKTLGA 365
Query: 1203 PDFPIDESVLSLIK-KRID 1220
P I ++ K KR+D
Sbjct: 366 P---IQREIIEQPKIKRVD 381
Score = 205 (77.2 bits), Expect = 4.1e-35, Sum P(3) = 4.1e-35
Identities = 50/167 (29%), Positives = 84/167 (50%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PGR 546
T+ ++I+ L + P+++ + + +T E +++ D F++ P
Sbjct: 188 TIPKDIKKLAKRYMDEPQMIQVQSE-EVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFL 246
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
++FC + +L L L + LH + Q +R + + FR+ L+ATDVAAR
Sbjct: 247 AVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAAR 306
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIES-DE 652
GLD+ G+ HV +Y +P E YIHR GRT RA GL + + + DE
Sbjct: 307 GLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDE 353
Score = 185 (70.2 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 50/133 (37%), Positives = 74/133 (55%)
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDA-GKYTPVKVACVVGGMSTEKQLRILNKC 926
E + + + ALI+APTRELA+Q+ I + + V + GG +QLR L
Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 986
HI+VATPGRL + I+ L+ L I V+DE D+M+ G ++++ILD ET
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTI---VLDEADQMLYFGFLYDIEDILD-----ET 176
Query: 987 SQPRQTFVFSATL 999
+QT +FSAT+
Sbjct: 177 PGSKQTMLFSATI 189
Score = 181 (68.8 bits), Expect = 8.2e-36, Sum P(3) = 8.2e-36
Identities = 51/143 (35%), Positives = 77/143 (53%)
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDA-GKYTPVKVACVVGGMSTEKQLRILNKC 309
E + + + ALI+APTRELA+Q+ I + + V + GG +QLR L
Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
HI+VATPGRL + I+ L+ L I V+DE D+M+ G ++++ILD ET
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTI---VLDEADQMLYFGFLYDIEDILD-----ET 176
Query: 370 SQPRQTMIESGHFP-ELKNILDR 391
+QTM+ S P ++K + R
Sbjct: 177 PGSKQTMLFSATIPKDIKKLAKR 199
Score = 125 (49.1 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V + +++ I ET L + G T IQ +P +L+ KDI+G A+TG+GKTLAF
Sbjct: 2 VYLKNFLELGISETFNHTLRENGITEATPIQEKAIP-VILSGKDIIGQAKTGTGKTLAFV 60
Query: 208 IPILTGI 214
+PIL I
Sbjct: 61 LPILEKI 67
Score = 125 (49.1 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V + +++ I ET L + G T IQ +P +L+ KDI+G A+TG+GKTLAF
Sbjct: 2 VYLKNFLELGISETFNHTLRENGITEATPIQEKAIP-VILSGKDIIGQAKTGTGKTLAFV 60
Query: 825 IPILTGI 831
+PIL I
Sbjct: 61 LPILEKI 67
Score = 113 (44.8 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 1356 ALILAPTRELAIQVQNHILDA-GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q+ I + + V + GG +QLR L HI+VATPG L
Sbjct: 76 ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRL 135
Query: 1415 --SLKR--IDLA 1422
++R IDL+
Sbjct: 136 LDHIRRETIDLS 147
Score = 69 (29.3 bits), Expect = 3.1e-21, Sum P(3) = 3.1e-21
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIES-DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK- 1295
++++HR GRT RA GL + + + DE K +EK + P I ++ K
Sbjct: 326 ESYIHRIGRTGRAGGSGLAITFVAAKDE-----KHLEEIEKTLGAP---IQREIIEQPKI 377
Query: 1296 KRID 1299
KR+D
Sbjct: 378 KRVD 381
Score = 53 (23.7 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 356 ELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
+L N L + + E Q M+ G ++++ILD ET +QT +FSAT+
Sbjct: 145 DLSN-LSTIVLDEADQ----MLYFGFLYDIEDILD-----ETPGSKQTMLFSATI 189
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 211 (79.3 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 59/199 (29%), Positives = 95/199 (47%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PGRTLVF 1083
IK+L + P+++ + + +T E +++ D F++ P ++F
Sbjct: 193 IKKLAKRY-MDEPQMIQVQSE-EVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIF 250
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
C + +L L L + LH + Q +R + + FR+ L+ATDVAARGLD+
Sbjct: 251 CRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDV 310
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES-DEIPLYIKMFNSLEKKVDL 1202
G+ HV +Y +P E YIHR GRT RA GL + + + DE K +EK +
Sbjct: 311 DGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDE-----KHLEEIEKTLGA 365
Query: 1203 PDFPIDESVLSLIK-KRID 1220
P I ++ K KR+D
Sbjct: 366 P---IQREIIEQPKIKRVD 381
Score = 205 (77.2 bits), Expect = 4.1e-35, Sum P(3) = 4.1e-35
Identities = 50/167 (29%), Positives = 84/167 (50%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PGR 546
T+ ++I+ L + P+++ + + +T E +++ D F++ P
Sbjct: 188 TIPKDIKKLAKRYMDEPQMIQVQSE-EVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFL 246
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
++FC + +L L L + LH + Q +R + + FR+ L+ATDVAAR
Sbjct: 247 AVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAAR 306
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIES-DE 652
GLD+ G+ HV +Y +P E YIHR GRT RA GL + + + DE
Sbjct: 307 GLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDE 353
Score = 185 (70.2 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 50/133 (37%), Positives = 74/133 (55%)
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDA-GKYTPVKVACVVGGMSTEKQLRILNKC 926
E + + + ALI+APTRELA+Q+ I + + V + GG +QLR L
Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 986
HI+VATPGRL + I+ L+ L I V+DE D+M+ G ++++ILD ET
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTI---VLDEADQMLYFGFLYDIEDILD-----ET 176
Query: 987 SQPRQTFVFSATL 999
+QT +FSAT+
Sbjct: 177 PGSKQTMLFSATI 189
Score = 181 (68.8 bits), Expect = 8.2e-36, Sum P(3) = 8.2e-36
Identities = 51/143 (35%), Positives = 77/143 (53%)
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDA-GKYTPVKVACVVGGMSTEKQLRILNKC 309
E + + + ALI+APTRELA+Q+ I + + V + GG +QLR L
Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
HI+VATPGRL + I+ L+ L I V+DE D+M+ G ++++ILD ET
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTI---VLDEADQMLYFGFLYDIEDILD-----ET 176
Query: 370 SQPRQTMIESGHFP-ELKNILDR 391
+QTM+ S P ++K + R
Sbjct: 177 PGSKQTMLFSATIPKDIKKLAKR 199
Score = 125 (49.1 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V + +++ I ET L + G T IQ +P +L+ KDI+G A+TG+GKTLAF
Sbjct: 2 VYLKNFLELGISETFNHTLRENGITEATPIQEKAIP-VILSGKDIIGQAKTGTGKTLAFV 60
Query: 208 IPILTGI 214
+PIL I
Sbjct: 61 LPILEKI 67
Score = 125 (49.1 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V + +++ I ET L + G T IQ +P +L+ KDI+G A+TG+GKTLAF
Sbjct: 2 VYLKNFLELGISETFNHTLRENGITEATPIQEKAIP-VILSGKDIIGQAKTGTGKTLAFV 60
Query: 825 IPILTGI 831
+PIL I
Sbjct: 61 LPILEKI 67
Score = 113 (44.8 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 1356 ALILAPTRELAIQVQNHILDA-GKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALI+APTRELA+Q+ I + + V + GG +QLR L HI+VATPG L
Sbjct: 76 ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRL 135
Query: 1415 --SLKR--IDLA 1422
++R IDL+
Sbjct: 136 LDHIRRETIDLS 147
Score = 69 (29.3 bits), Expect = 3.1e-21, Sum P(3) = 3.1e-21
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIES-DEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK- 1295
++++HR GRT RA GL + + + DE K +EK + P I ++ K
Sbjct: 326 ESYIHRIGRTGRAGGSGLAITFVAAKDE-----KHLEEIEKTLGAP---IQREIIEQPKI 377
Query: 1296 KRID 1299
KR+D
Sbjct: 378 KRVD 381
Score = 53 (23.7 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 356 ELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
+L N L + + E Q M+ G ++++ILD ET +QT +FSAT+
Sbjct: 145 DLSN-LSTIVLDEADQ----MLYFGFLYDIEDILD-----ETPGSKQTMLFSATI 189
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 223 (83.6 bits), Expect = 3.3e-36, Sum P(4) = 3.3e-36
Identities = 47/122 (38%), Positives = 73/122 (59%)
Query: 1065 KDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
+D L +L H P ++VFCN+ V+ + L S + LH M QR+R + L +F
Sbjct: 230 RDEALETLLLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQF 289
Query: 1124 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183
+++ SIL+ATDVAARGLD+ ++ V +Y + R E+++HR GRT RA ++GL
Sbjct: 290 ANKSISILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSD 349
Query: 1184 DE 1185
+E
Sbjct: 350 NE 351
Score = 222 (83.2 bits), Expect = 7.2e-36, Sum P(4) = 7.2e-36
Identities = 47/122 (38%), Positives = 73/122 (59%)
Query: 532 KDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 590
+D L +L H P ++VFCN+ V+ + L S + LH M QR+R + L +F
Sbjct: 230 RDEALETLLLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQF 289
Query: 591 RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIES 650
+++ SIL+ATDVAARGLD+ ++ V +Y + R E+++HR GRT RA ++GL
Sbjct: 290 ANKSISILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSD 349
Query: 651 DE 652
+E
Sbjct: 350 NE 351
Score = 187 (70.9 bits), Expect = 3.3e-36, Sum P(4) = 3.3e-36
Identities = 52/126 (41%), Positives = 70/126 (55%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVA 932
R ++ AL+L PTRELA QV I G+ +KV + GGM Q+ L HILV
Sbjct: 70 RFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVG 129
Query: 933 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT 992
TPGR+ + + L+EL N LV+DE DRM+E G F E L+ + ++ RQT
Sbjct: 130 TPGRILDHLSKDRIDLSEL---NTLVLDEADRMLEMG-FQEA---LEAIIAAAPAE-RQT 181
Query: 993 FVFSAT 998
+FSAT
Sbjct: 182 LLFSAT 187
Score = 185 (70.2 bits), Expect = 5.4e-36, Sum P(4) = 5.4e-36
Identities = 53/139 (38%), Positives = 75/139 (53%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVA 315
R ++ AL+L PTRELA QV I G+ +KV + GGM Q+ L HILV
Sbjct: 70 RFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVG 129
Query: 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT 375
TPGR+ + + L+EL N LV+DE DRM+E G F E L+ + ++ RQT
Sbjct: 130 TPGRILDHLSKDRIDLSEL---NTLVLDEADRMLEMG-FQEA---LEAIIAAAPAE-RQT 181
Query: 376 MIESGHFP-ELKNILDRVT 393
++ S +P ++ I VT
Sbjct: 182 LLFSATYPASIEQIAQSVT 200
Score = 119 (46.9 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 34/78 (43%), Positives = 42/78 (53%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVA 1409
R+ AL+L PTRELA QV I G+ +KV + GGM Q+ L HILV
Sbjct: 70 RFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVG 129
Query: 1410 TPGA----LSLKRIDLAK 1423
TPG LS RIDL++
Sbjct: 130 TPGRILDHLSKDRIDLSE 147
Score = 114 (45.2 bits), Expect = 3.3e-36, Sum P(4) = 3.3e-36
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N+ ++ L GF T T IQ+ +P A+L +D++G +TGSGKT AFG+ +L+ +
Sbjct: 10 NLKPELLANLETMGFATMTPIQAQSLP-AILKGQDVIGQGKTGSGKTAAFGLGVLSNL 66
Score = 114 (45.2 bits), Expect = 3.3e-36, Sum P(4) = 3.3e-36
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N+ ++ L GF T T IQ+ +P A+L +D++G +TGSGKT AFG+ +L+ +
Sbjct: 10 NLKPELLANLETMGFATMTPIQAQSLP-AILKGQDVIGQGKTGSGKTAAFGLGVLSNL 66
Score = 57 (25.1 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDE 1264
P+ +HR GRT RA ++GL +E
Sbjct: 324 PEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
Score = 40 (19.1 bits), Expect = 3.7e-21, Sum P(4) = 3.7e-21
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 362 DRVTMTETS----QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
DR+ ++E + M+E G F E L+ + ++ RQT +FSAT
Sbjct: 141 DRIDLSELNTLVLDEADRMLEMG-FQEA---LEAIIAAAPAE-RQTLLFSAT 187
Score = 37 (18.1 bits), Expect = 3.3e-36, Sum P(4) = 3.3e-36
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 1360 APTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL 1397
A R A + +D GK V+ ++G ++++ +L
Sbjct: 376 AGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGEL 413
Score = 37 (18.1 bits), Expect = 7.2e-36, Sum P(4) = 7.2e-36
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 883 APTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL 920
A R A + +D GK V+ ++G ++++ +L
Sbjct: 376 AGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGEL 413
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 216 (81.1 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 48/120 (40%), Positives = 73/120 (60%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
AL+LAPTRELA Q+Q ++ G T V+ C+ GG +Q R L + I++ATPGRL
Sbjct: 233 ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLI 292
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+F++ G T L + YLV+DE DRM++ G P+++ I+ ++ RQ ++SAT
Sbjct: 293 DFLERG---TTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIR-----PDRQVLMWSAT 344
Score = 213 (80.0 bits), Expect = 9.1e-36, Sum P(3) = 9.1e-36
Identities = 48/130 (36%), Positives = 78/130 (60%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
AL+LAPTRELA Q+Q ++ G T V+ C+ GG +Q R L + I++ATPGRL
Sbjct: 233 ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLI 292
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+F++ G T L + YLV+DE DRM++ G P+++ I+ ++ RQ ++ S
Sbjct: 293 DFLERG---TTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIR-----PDRQVLMWSAT 344
Query: 382 FP-ELKNILD 390
+P E++ + +
Sbjct: 345 WPKEVRQLAE 354
Score = 194 (73.4 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 40/102 (39%), Positives = 61/102 (59%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+T++F + V +T+ ++ +H +Q++R L FR+ +SIL+ATDVAA
Sbjct: 406 KTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAA 465
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
RGLD+ ++ VI+Y P SE Y+HR GRT R+NN G L
Sbjct: 466 RGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTL 507
Score = 194 (73.4 bits), Expect = 9.1e-36, Sum P(3) = 9.1e-36
Identities = 40/102 (39%), Positives = 61/102 (59%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+T++F + V +T+ ++ +H +Q++R L FR+ +SIL+ATDVAA
Sbjct: 406 KTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAA 465
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
RGLD+ ++ VI+Y P SE Y+HR GRT R+NN G L
Sbjct: 466 RGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTL 507
Score = 126 (49.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+LAPTRELA Q+Q ++ G T V+ C+ GG +Q R L + I++ATPG L
Sbjct: 233 ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRL 291
Score = 124 (48.7 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
E+ + P+ ++ + ++GF PT IQ+ P A+ R D+VG A+TGSGKTLA+ +P +
Sbjct: 158 EFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGR-DLVGVAQTGSGKTLAYVLPAV 216
Query: 212 TGIVNK 217
I N+
Sbjct: 217 VHINNQ 222
Score = 124 (48.7 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
E+ + P+ ++ + ++GF PT IQ+ P A+ R D+VG A+TGSGKTLA+ +P +
Sbjct: 158 EFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGR-DLVGVAQTGSGKTLAYVLPAV 216
Query: 829 TGIVNK 834
I N+
Sbjct: 217 VHINNQ 222
Score = 58 (25.5 bits), Expect = 5.1e-22, Sum P(3) = 5.1e-22
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1238 DNWLHRSGRTARANNEGLTLVL 1259
++++HR GRT R+NN G L
Sbjct: 486 EDYVHRIGRTGRSNNTGTAYTL 507
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 214 (80.4 bits), Expect = 4.5e-36, Sum P(3) = 4.5e-36
Identities = 47/119 (39%), Positives = 72/119 (60%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LILAPTRELA+Q+Q G + V+ C+ GG Q+R L + I++ATPGRL +
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
++ H T L ++ YLV+DE DRM++ G P+++ I+ ++ RQT ++SAT
Sbjct: 302 MLECQH---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIR-----PDRQTLLWSAT 352
Score = 211 (79.3 bits), Expect = 9.6e-36, Sum P(3) = 9.6e-36
Identities = 48/129 (37%), Positives = 74/129 (57%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LILAPTRELA+Q+Q G + V+ C+ GG Q+R L + I++ATPGRL +
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ H T L ++ YLV+DE DRM++ G P+++ I+ ++ RQT++ S +
Sbjct: 302 MLECQH---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIR-----PDRQTLLWSATW 353
Query: 383 PELKNILDR 391
P L R
Sbjct: 354 PREVETLAR 362
Score = 178 (67.7 bits), Expect = 4.5e-36, Sum P(3) = 4.5e-36
Identities = 40/111 (36%), Positives = 58/111 (52%)
Query: 1074 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
L + L+F + ++T+ L M L +H Q +R + L F+ + I+ A
Sbjct: 407 LMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTA 466
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
TDVAARGLD+ I+ V++Y P T E YIHR GRT RA +G+ D
Sbjct: 467 TDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHD 517
Score = 177 (67.4 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 40/111 (36%), Positives = 58/111 (52%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
L + L+F + ++T+ L M L +H Q +R + L F+ + I+ A
Sbjct: 407 LMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTA 466
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651
TDVAARGLD+ I+ V++Y P T E YIHR GRT RA +G+ D
Sbjct: 467 TDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHD 517
Score = 135 (52.6 bits), Expect = 4.5e-36, Sum P(3) = 4.5e-36
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N P+ I+ A+ + GF PT IQ+ P AL R D++G AETGSGKTLA+ +P L +
Sbjct: 171 NFPDNILEAIAKLGFTEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPALVHV 227
Score = 135 (52.6 bits), Expect = 4.5e-36, Sum P(3) = 4.5e-36
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N P+ I+ A+ + GF PT IQ+ P AL R D++G AETGSGKTLA+ +P L +
Sbjct: 171 NFPDNILEAIAKLGFTEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPALVHV 227
Score = 120 (47.3 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LILAPTRELA+Q+Q G + V+ C+ GG Q+R L + I++ATPG L
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL 299
Score = 56 (24.8 bits), Expect = 3.3e-23, Sum P(4) = 3.3e-23
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESD 1263
N ++++HR GRT RA +G+ D
Sbjct: 489 NTLEDYIHRIGRTGRAGAKGMAFTFFTHD 517
Score = 40 (19.1 bits), Expect = 3.3e-23, Sum P(4) = 3.3e-23
Identities = 10/43 (23%), Positives = 27/43 (62%)
Query: 1190 IKMFNSLEKKVDLPDFPIDES-VLSLIKKRIDLAKSIEYLESK 1231
+K S+ + +++ P + +L+L+K+ +D +K + ++E+K
Sbjct: 378 LKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETK 420
Score = 40 (19.1 bits), Expect = 8.5e-22, Sum P(3) = 8.5e-22
Identities = 10/43 (23%), Positives = 27/43 (62%)
Query: 1269 IKMFNSLEKKVDLPDFPIDES-VLSLIKKRIDLAKSIEYLESK 1310
+K S+ + +++ P + +L+L+K+ +D +K + ++E+K
Sbjct: 378 LKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETK 420
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 217 (81.4 bits), Expect = 4.7e-36, Sum P(3) = 4.7e-36
Identities = 55/196 (28%), Positives = 99/196 (50%)
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTM 1099
VD + + L + ++ D++ L+ F+ ++ + +VF +S +SVK + +LL
Sbjct: 299 VDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNY 358
Query: 1100 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
+ L LH Q++R F + ILL T+VAARGLDIP ++ ++ Y P
Sbjct: 359 IDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPR 418
Query: 1160 IYIHRSGRTARANN-EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
YIHR GRTAR G +L+ + E+ +++ + KV L +F + ++ ++ +
Sbjct: 419 DYIHRVGRTARGTKGTGKSLMFLAPSELG-FLRYLKTA--KVSLNEFEFPANKVANVQSQ 475
Query: 1219 ID-LAKSIEYLESKIK 1233
++ L YL+ K
Sbjct: 476 LEKLVSKNYYLQQSAK 491
Score = 201 (75.8 bits), Expect = 2.1e-32, Sum P(3) = 2.1e-32
Identities = 50/170 (29%), Positives = 88/170 (51%)
Query: 491 TLCEEIQDL--LNIKSPKI---VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-P 544
T +++DL +++K + VD + + L + ++ D++ L+ F+ ++
Sbjct: 277 TQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLK 336
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+ +VF +S +SVK + +LL + L LH Q++R F + ILL T+VA
Sbjct: 337 KKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVA 396
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN-EGLTVVLIESDEI 653
ARGLDIP ++ ++ Y P YIHR GRTAR G +++ + E+
Sbjct: 397 ARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSEL 446
Score = 169 (64.5 bits), Expect = 4.7e-36, Sum P(3) = 4.7e-36
Identities = 47/129 (36%), Positives = 71/129 (55%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
K RN +I++PTRELA+Q+ + KY V+GG + + L K ++LV
Sbjct: 157 KPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLV 216
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + +Q + + LVIDE DR++E G E++ I+ ++ +E RQ
Sbjct: 217 ATPGRLLDHLQNTKGFVFR--NLRSLVIDEADRILEIGFEDEMRQIM-KILPSEN---RQ 270
Query: 992 TFVFSATLT 1000
T +FSAT T
Sbjct: 271 TLLFSATQT 279
Score = 151 (58.2 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
Identities = 43/125 (34%), Positives = 68/125 (54%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
K RN +I++PTRELA+Q+ + KY V+GG + + L K ++LV
Sbjct: 157 KPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLV 216
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + +Q + + LVIDE DR++E G E++ I+ ++ +E RQ
Sbjct: 217 ATPGRLLDHLQNTKGFVFR--NLRSLVIDEADRILEIGFEDEMRQIM-KILPSEN---RQ 270
Query: 375 TMIES 379
T++ S
Sbjct: 271 TLLFS 275
Score = 140 (54.3 bits), Expect = 4.7e-36, Sum P(3) = 4.7e-36
Identities = 36/115 (31%), Positives = 61/115 (53%)
Query: 97 DPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQMAEWVKF 156
D DD + E +D+ +S ++ + ++ S+ D+ ++
Sbjct: 39 DEDDYEQEEENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTSDI----EKFSDL 94
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ E I +A+ + GF+T T+IQ +P LLA +D++GAA+TGSGKTLAF IP +
Sbjct: 95 QLSENIQKAIKEMGFETMTEIQKRSIPP-LLAGRDVLGAAKTGSGKTLAFLIPTI 148
Score = 137 (53.3 bits), Expect = 9.7e-36, Sum P(3) = 9.7e-36
Identities = 36/115 (31%), Positives = 60/115 (52%)
Query: 714 DPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQMAEWVKF 773
D DD + E +D+ S ++ + ++ S+ D+ ++
Sbjct: 39 DEDDYEQEEENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTSDI----EKFSDL 94
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ E I +A+ + GF+T T+IQ +P LLA +D++GAA+TGSGKTLAF IP +
Sbjct: 95 QLSENIQKAIKEMGFETMTEIQKRSIPP-LLAGRDVLGAAKTGSGKTLAFLIPTI 148
Score = 96 (38.9 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 40/140 (28%), Positives = 62/140 (44%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L F+ RN +I++PTRELA+Q+ + KY V+GG + + L K
Sbjct: 154 LKFKPRN---GTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVK 210
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPK 1461
++LVATPG L L + K + + + + D LE +D I P
Sbjct: 211 GVNLLVATPGRL-LDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMK---ILPS 266
Query: 1462 ANSRENALMSKALVSKRKEL 1481
N R+ L S +K ++L
Sbjct: 267 EN-RQTLLFSATQTTKVEDL 285
Score = 67 (28.6 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 1237 PDNWLHRSGRTARANN-EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1295
P +++HR GRTAR G +L+ + E+ +++ + KV L +F + ++ ++
Sbjct: 417 PRDYIHRVGRTARGTKGTGKSLMFLAPSELG-FLRYLKTA--KVSLNEFEFPANKVANVQ 473
Query: 1296 KRID-LAKSIEYLESKIK 1312
+++ L YL+ K
Sbjct: 474 SQLEKLVSKNYYLQQSAK 491
Score = 51 (23.0 bits), Expect = 7.8e-24, Sum P(3) = 7.8e-24
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399
L++ R+++ H K + R + ++E G E++ I+ ++ +E
Sbjct: 214 LLVATPGRLLD--HLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIM-KILPSEN-- 268
Query: 400 PRQTFVFSATLT 411
RQT +FSAT T
Sbjct: 269 -RQTLLFSATQT 279
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 212 (79.7 bits), Expect = 5.7e-36, Sum P(3) = 5.7e-36
Identities = 50/128 (39%), Positives = 81/128 (63%)
Query: 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
+K R + L+++PTRELA Q+ ++++ ++ CV GG+ ++Q RI K ++
Sbjct: 178 QKKRG-IQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQ-RIQLKKSQVV 235
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
VATPGRL + +Q G L++ +NYLV+DE DRM+E G ++KNI+ T+ S+ R
Sbjct: 236 VATPGRLLDLLQEGSVDLSQ---VNYLVLDEADRMLEKGFEEDIKNIIRE---TDASK-R 288
Query: 991 QTFVFSAT 998
QT +F+AT
Sbjct: 289 QTLMFTAT 296
Score = 203 (76.5 bits), Expect = 3.7e-35, Sum P(3) = 3.7e-35
Identities = 48/131 (36%), Positives = 82/131 (62%)
Query: 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
+K R + L+++PTRELA Q+ ++++ ++ CV GG+ ++Q RI K ++
Sbjct: 178 QKKRG-IQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQ-RIQLKKSQVV 235
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
VATPGRL + +Q G L++ +NYLV+DE DRM+E G ++KNI+ T+ S+ R
Sbjct: 236 VATPGRLLDLLQEGSVDLSQ---VNYLVLDEADRMLEKGFEEDIKNIIRE---TDASK-R 288
Query: 374 QTMIESGHFPE 384
QT++ + +P+
Sbjct: 289 QTLMFTATWPK 299
Score = 184 (69.8 bits), Expect = 3.7e-35, Sum P(3) = 3.7e-35
Identities = 51/169 (30%), Positives = 87/169 (51%)
Query: 494 EEIQDLLN--IKSPKIVDL--TEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPG--- 545
+E+++L + + +P V + T+++ K +T+ + K+ L + + H G
Sbjct: 299 KEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKK 358
Query: 546 --RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+ L+F R+ + L + +H ++Q+QR + L+ F+ +++LLATDV
Sbjct: 359 NEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDV 418
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
AARGLDIP ++ VI+ P T E Y+HR GRT RA G L E
Sbjct: 419 AARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE 467
Score = 182 (69.1 bits), Expect = 5.7e-36, Sum P(3) = 5.7e-36
Identities = 40/107 (37%), Positives = 59/107 (55%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+ L+F R+ + L + +H ++Q+QR + L+ F+ +++LLATDVAA
Sbjct: 361 KVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAA 420
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
RGLDIP ++ VI+ P T E Y+HR GRT RA G L E
Sbjct: 421 RGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE 467
Score = 129 (50.5 bits), Expect = 5.7e-36, Sum P(3) = 5.7e-36
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
++ I+A K F PT IQ++ P LL+ KD+VG AETGSGKT AFG+P ++ ++N
Sbjct: 122 DSSIQAEISK-FPKPTPIQAVAWPY-LLSGKDVVGVAETGSGKTFAFGVPAISHLMN 176
Score = 129 (50.5 bits), Expect = 5.7e-36, Sum P(3) = 5.7e-36
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
++ I+A K F PT IQ++ P LL+ KD+VG AETGSGKT AFG+P ++ ++N
Sbjct: 122 DSSIQAEISK-FPKPTPIQAVAWPY-LLSGKDVVGVAETGSGKTFAFGVPAISHLMN 176
Score = 113 (44.8 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 41/132 (31%), Positives = 69/132 (52%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS- 1415
L+++PTRELA Q+ ++++ ++ CV GG+ ++Q RI K ++VATPG L
Sbjct: 186 LVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQ-RIQLKKSQVVVATPGRLLD 244
Query: 1416 -LKR--IDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSK 1472
L+ +DL++ + YL + D LEK ++ +N+I+ S+ LM
Sbjct: 245 LLQEGSVDLSQ-VNYLVL----DEADRMLEKGFEE-----DIKNIIRETDASKRQTLMFT 294
Query: 1473 ALVSKR-KELQS 1483
A K +EL S
Sbjct: 295 ATWPKEVRELAS 306
Score = 54 (24.1 bits), Expect = 2.2e-19, Sum P(3) = 2.2e-19
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M+E G ++KNI+ T+ S+ RQT +F+AT
Sbjct: 267 MLEKGFEEDIKNIIRE---TDASK-RQTLMFTAT 296
Score = 51 (23.0 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDE 1264
++++HR GRT RA G L E
Sbjct: 441 EDYVHRIGRTGRAGQTGTAHTLFTEQE 467
Score = 46 (21.3 bits), Expect = 6.8e-22, Sum P(3) = 6.8e-22
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
LI A ++ A +V+ ++ KY VA + G +S +++ + LN+
Sbjct: 363 LIFALYKKEAARVERNL----KYNGYNVAAIHGDLSQQQRTQALNE 404
Score = 46 (21.3 bits), Expect = 7.0e-22, Sum P(4) = 7.0e-22
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
LI A ++ A +V+ ++ KY VA + G +S +++ + LN+
Sbjct: 363 LIFALYKKEAARVERNL----KYNGYNVAAIHGDLSQQQRTQALNE 404
Score = 46 (21.3 bits), Expect = 6.0e-05, Sum P(3) = 6.0e-05
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308
LI A ++ A +V+ ++ KY VA + G +S +++ + LN+
Sbjct: 363 LIFALYKKEAARVERNL----KYNGYNVAAIHGDLSQQQRTQALNE 404
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 220 (82.5 bits), Expect = 6.2e-36, Sum P(3) = 6.2e-36
Identities = 50/148 (33%), Positives = 82/148 (55%)
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F + + + + L L L+ +NQ QR + +D+ + +SIL+ATDV ARG
Sbjct: 258 IIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARG 317
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE---IPLYIKMFNSLE 1197
LDIP I VI+Y +P +E Y+HR GRT RA EG+++ + E I Y ++ N
Sbjct: 318 LDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLTNGTV 377
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSI 1225
DLP+ D + + + R+++AK +
Sbjct: 378 LNYDLPNIQ-DIGKIRIERTRVEVAKIV 404
Score = 199 (75.1 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 40/106 (37%), Positives = 63/106 (59%)
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++F + + + + L L L+ +NQ QR + +D+ + +SIL+ATDV ARG
Sbjct: 258 IIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARG 317
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LDIP I VI+Y +P +E Y+HR GRT RA EG+++ + E+
Sbjct: 318 LDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREM 363
Score = 162 (62.1 bits), Expect = 6.2e-36, Sum P(3) = 6.2e-36
Identities = 44/121 (36%), Positives = 65/121 (53%)
Query: 880 LILAPTRELAIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
++LAPTRELA+QV I GK ++VA + GG S Q + L + ++V TPGRL
Sbjct: 87 MVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVGTPGRLM 146
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ ++ L EL V+DE D M+ G +++ ILD + T Q +FSAT
Sbjct: 147 DHLRRKSLKLDEL---RVCVLDEADEMLNMGFLEDIQWILDHIPKTA-----QMCLFSAT 198
Query: 999 L 999
+
Sbjct: 199 M 199
Score = 156 (60.0 bits), Expect = 2.6e-35, Sum P(3) = 2.6e-35
Identities = 39/106 (36%), Positives = 58/106 (54%)
Query: 263 LILAPTRELAIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
++LAPTRELA+QV I GK ++VA + GG S Q + L + ++V TPGRL
Sbjct: 87 MVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVGTPGRLM 146
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 367
+ ++ L EL V+DE D M+ G +++ ILD + T
Sbjct: 147 DHLRRKSLKLDEL---RVCVLDEADEMLNMGFLEDIQWILDHIPKT 189
Score = 144 (55.7 bits), Expect = 6.2e-36, Sum P(3) = 6.2e-36
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ +PE ++ A+ GF + T IQ++ +P LLA KD++G A+TG+GKT AFG+P L
Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPP-LLAGKDVLGEAQTGTGKTAAFGLPALA 75
Query: 213 GIVNKLENP 221
I ++ P
Sbjct: 76 KIDTSIKKP 84
Score = 144 (55.7 bits), Expect = 6.2e-36, Sum P(3) = 6.2e-36
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ +PE ++ A+ GF + T IQ++ +P LLA KD++G A+TG+GKT AFG+P L
Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPP-LLAGKDVLGEAQTGTGKTAAFGLPALA 75
Query: 830 GIVNKLENP 838
I ++ P
Sbjct: 76 KIDTSIKKP 84
Score = 102 (41.0 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 1357 LILAPTRELAIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
++LAPTRELA+QV I GK ++VA + GG S Q + L + ++V TPG L
Sbjct: 87 MVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVGTPGRL 145
Score = 84 (34.6 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 1238 DN--WLHRSGRTARANNEGLTLVLIESDE---IPLYIKMFNSLEKKVDLPDFPIDESVLS 1292
DN ++HR GRT RA EG+++ + E I Y ++ N DLP+ D +
Sbjct: 334 DNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLTNGTVLNYDLPNIQ-DIGKIR 392
Query: 1293 LIKKRIDLAKSI 1304
+ + R+++AK +
Sbjct: 393 IERTRVEVAKIV 404
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 219 (82.2 bits), Expect = 6.4e-36, Sum P(3) = 6.4e-36
Identities = 58/215 (26%), Positives = 113/215 (52%)
Query: 1028 RLQDLLNIK---SPKIVDLT-EK-IGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTL 1081
+++DL I P +++ EK + L + ++C D++ L+ F+ ++ + +
Sbjct: 299 KVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFLKRNVKKKII 358
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF +S +SVK ++LL + L LH Q++R F + IL+ TDVAARGL
Sbjct: 359 VFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVAARGL 418
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANN-EGLTLVLIESDEIPLYIKMFNSLEKKV 1200
DIP ++ ++ + P YIHR GRTAR +G +L+ + E+ +++ + + +
Sbjct: 419 DIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELG-FLRYLKAAKVPL 477
Query: 1201 DLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN 1235
+ +FP ++ + ++ + L K+ YL ++ K+
Sbjct: 478 NEYEFPANK-IANIQSQLTKLIKT-NYLLNQSAKD 510
Score = 210 (79.0 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 51/170 (30%), Positives = 89/170 (52%)
Query: 491 TLCEEIQDLLNIK---SPKIVDLT-EK-IGITKTLTESKILCKHDEKDSYLYYFILQH-P 544
T +++DL I P +++ EK + L + ++C D++ L+ F+ ++
Sbjct: 295 TQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFLKRNVK 354
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+ +VF +S +SVK ++LL + L LH Q++R F + IL+ TDVA
Sbjct: 355 KKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVA 414
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN-EGLTVVLIESDEI 653
ARGLDIP ++ ++ + P YIHR GRTAR +G +++ + E+
Sbjct: 415 ARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSEL 464
Score = 171 (65.3 bits), Expect = 6.4e-36, Sum P(3) = 6.4e-36
Identities = 47/129 (36%), Positives = 70/129 (54%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
K RN +I+ PTRELA+Q+ + ++ V+GG ++ L K ++LV
Sbjct: 176 KPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLV 235
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + ++ F + L LVIDE DR++E G E+K I+ +V E RQ
Sbjct: 236 ATPGRLLDHLKNTQFVFSNL---KALVIDEADRILEIGFEDEMKQII-KVLPNEN---RQ 288
Query: 992 TFVFSATLT 1000
+ +FSAT T
Sbjct: 289 SMLFSATQT 297
Score = 156 (60.0 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 44/125 (35%), Positives = 67/125 (53%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
K RN +I+ PTRELA+Q+ + ++ V+GG ++ L K ++LV
Sbjct: 176 KPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLV 235
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + ++ F + L LVIDE DR++E G E+K I+ +V E RQ
Sbjct: 236 ATPGRLLDHLKNTQFVFSNL---KALVIDEADRILEIGFEDEMKQII-KVLPNEN---RQ 288
Query: 375 TMIES 379
+M+ S
Sbjct: 289 SMLFS 293
Score = 134 (52.2 bits), Expect = 6.4e-36, Sum P(3) = 6.4e-36
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
EV ++N+D + + + E ++A+ + GF TK+Q+ +P LLA +D++GAA
Sbjct: 94 EVPDNDNDDDSSEDVLFENADFSEPTMKAIKEMGFTKMTKVQAKTIPP-LLAGRDVLGAA 152
Query: 197 ETGSGKTLAFGIPIL 211
+TGSGKTLAF IP +
Sbjct: 153 KTGSGKTLAFLIPAI 167
Score = 134 (52.2 bits), Expect = 6.4e-36, Sum P(3) = 6.4e-36
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
EV ++N+D + + + E ++A+ + GF TK+Q+ +P LLA +D++GAA
Sbjct: 94 EVPDNDNDDDSSEDVLFENADFSEPTMKAIKEMGFTKMTKVQAKTIPP-LLAGRDVLGAA 152
Query: 814 ETGSGKTLAFGIPIL 828
+TGSGKTLAF IP +
Sbjct: 153 KTGSGKTLAFLIPAI 167
Score = 99 (39.9 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 35/128 (27%), Positives = 61/128 (47%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
+I+ PTRELA+Q+ + ++ V+GG ++ L K ++LVATPG L
Sbjct: 184 IIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRL-- 241
Query: 1417 KRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKA 1473
+D K+ +++ S +K + D LE +D + P N R++ L S
Sbjct: 242 --LDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIK---VLPNEN-RQSMLFSAT 295
Query: 1474 LVSKRKEL 1481
+K ++L
Sbjct: 296 QTTKVEDL 303
Score = 63 (27.2 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 18/79 (22%), Positives = 44/79 (55%)
Query: 1237 PDNWLHRSGRTARANN-EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1295
P +++HR GRTAR +G +L+ + E+ +++ + + ++ +FP ++ + ++
Sbjct: 435 PRDYIHRVGRTARGTQGKGKSLMFLTPSELG-FLRYLKAAKVPLNEYEFPANK-IANIQS 492
Query: 1296 KRIDLAKSIEYLESKIKKN 1314
+ L K+ YL ++ K+
Sbjct: 493 QLTKLIKT-NYLLNQSAKD 510
Score = 45 (20.9 bits), Expect = 7.1e-23, Sum P(3) = 7.1e-23
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
++E G E+K I+ +V E RQ+ +FSAT T
Sbjct: 266 ILEIGFEDEMKQII-KVLPNEN---RQSMLFSATQT 297
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 219 (82.2 bits), Expect = 6.4e-36, Sum P(3) = 6.4e-36
Identities = 58/215 (26%), Positives = 113/215 (52%)
Query: 1028 RLQDLLNIK---SPKIVDLT-EK-IGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTL 1081
+++DL I P +++ EK + L + ++C D++ L+ F+ ++ + +
Sbjct: 299 KVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFLKRNVKKKII 358
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF +S +SVK ++LL + L LH Q++R F + IL+ TDVAARGL
Sbjct: 359 VFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVAARGL 418
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANN-EGLTLVLIESDEIPLYIKMFNSLEKKV 1200
DIP ++ ++ + P YIHR GRTAR +G +L+ + E+ +++ + + +
Sbjct: 419 DIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELG-FLRYLKAAKVPL 477
Query: 1201 DLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKN 1235
+ +FP ++ + ++ + L K+ YL ++ K+
Sbjct: 478 NEYEFPANK-IANIQSQLTKLIKT-NYLLNQSAKD 510
Score = 210 (79.0 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 51/170 (30%), Positives = 89/170 (52%)
Query: 491 TLCEEIQDLLNIK---SPKIVDLT-EK-IGITKTLTESKILCKHDEKDSYLYYFILQH-P 544
T +++DL I P +++ EK + L + ++C D++ L+ F+ ++
Sbjct: 295 TQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFLKRNVK 354
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+ +VF +S +SVK ++LL + L LH Q++R F + IL+ TDVA
Sbjct: 355 KKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVA 414
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN-EGLTVVLIESDEI 653
ARGLDIP ++ ++ + P YIHR GRTAR +G +++ + E+
Sbjct: 415 ARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSEL 464
Score = 171 (65.3 bits), Expect = 6.4e-36, Sum P(3) = 6.4e-36
Identities = 47/129 (36%), Positives = 70/129 (54%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
K RN +I+ PTRELA+Q+ + ++ V+GG ++ L K ++LV
Sbjct: 176 KPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLV 235
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + ++ F + L LVIDE DR++E G E+K I+ +V E RQ
Sbjct: 236 ATPGRLLDHLKNTQFVFSNL---KALVIDEADRILEIGFEDEMKQII-KVLPNEN---RQ 288
Query: 992 TFVFSATLT 1000
+ +FSAT T
Sbjct: 289 SMLFSATQT 297
Score = 156 (60.0 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 44/125 (35%), Positives = 67/125 (53%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
K RN +I+ PTRELA+Q+ + ++ V+GG ++ L K ++LV
Sbjct: 176 KPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLV 235
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + ++ F + L LVIDE DR++E G E+K I+ +V E RQ
Sbjct: 236 ATPGRLLDHLKNTQFVFSNL---KALVIDEADRILEIGFEDEMKQII-KVLPNEN---RQ 288
Query: 375 TMIES 379
+M+ S
Sbjct: 289 SMLFS 293
Score = 134 (52.2 bits), Expect = 6.4e-36, Sum P(3) = 6.4e-36
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
EV ++N+D + + + E ++A+ + GF TK+Q+ +P LLA +D++GAA
Sbjct: 94 EVPDNDNDDDSSEDVLFENADFSEPTMKAIKEMGFTKMTKVQAKTIPP-LLAGRDVLGAA 152
Query: 197 ETGSGKTLAFGIPIL 211
+TGSGKTLAF IP +
Sbjct: 153 KTGSGKTLAFLIPAI 167
Score = 134 (52.2 bits), Expect = 6.4e-36, Sum P(3) = 6.4e-36
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
EV ++N+D + + + E ++A+ + GF TK+Q+ +P LLA +D++GAA
Sbjct: 94 EVPDNDNDDDSSEDVLFENADFSEPTMKAIKEMGFTKMTKVQAKTIPP-LLAGRDVLGAA 152
Query: 814 ETGSGKTLAFGIPIL 828
+TGSGKTLAF IP +
Sbjct: 153 KTGSGKTLAFLIPAI 167
Score = 99 (39.9 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 35/128 (27%), Positives = 61/128 (47%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
+I+ PTRELA+Q+ + ++ V+GG ++ L K ++LVATPG L
Sbjct: 184 IIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRL-- 241
Query: 1417 KRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKA 1473
+D K+ +++ S +K + D LE +D + P N R++ L S
Sbjct: 242 --LDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIK---VLPNEN-RQSMLFSAT 295
Query: 1474 LVSKRKEL 1481
+K ++L
Sbjct: 296 QTTKVEDL 303
Score = 63 (27.2 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 18/79 (22%), Positives = 44/79 (55%)
Query: 1237 PDNWLHRSGRTARANN-EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1295
P +++HR GRTAR +G +L+ + E+ +++ + + ++ +FP ++ + ++
Sbjct: 435 PRDYIHRVGRTARGTQGKGKSLMFLTPSELG-FLRYLKAAKVPLNEYEFPANK-IANIQS 492
Query: 1296 KRIDLAKSIEYLESKIKKN 1314
+ L K+ YL ++ K+
Sbjct: 493 QLTKLIKT-NYLLNQSAKD 510
Score = 45 (20.9 bits), Expect = 7.1e-23, Sum P(3) = 7.1e-23
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
++E G E+K I+ +V E RQ+ +FSAT T
Sbjct: 266 ILEIGFEDEMKQII-KVLPNEN---RQSMLFSATQT 297
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 209 (78.6 bits), Expect = 7.7e-36, Sum P(3) = 7.7e-36
Identities = 45/115 (39%), Positives = 69/115 (60%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ L+FC++ + L + L + + L +H QR+R + L+ ++ +IL+ATDVA+
Sbjct: 602 KILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVAS 661
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE-IPLKTKF 659
RGLDI I VI+Y +P T E YIHR GRT RA +G +++ D +P K KF
Sbjct: 662 RGLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKF 716
Score = 202 (76.2 bits), Expect = 4.5e-35, Sum P(3) = 4.5e-35
Identities = 45/121 (37%), Positives = 70/121 (57%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+ L+FC++ + L + L + + L +H QR+R + L+ ++ +IL+ATDVA+
Sbjct: 602 KILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVAS 661
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE-IPLYIKMFNSLE 1197
RGLDI I VI+Y +P T E YIHR GRT RA +G +++ D +P +K L
Sbjct: 662 RGLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKELI 721
Query: 1198 K 1198
K
Sbjct: 722 K 722
Score = 200 (75.5 bits), Expect = 7.7e-36, Sum P(3) = 7.7e-36
Identities = 48/124 (38%), Positives = 72/124 (58%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
Y LIL PTREL +QV + I K P+K V GG+ Q+ L K I+VATPGRL
Sbjct: 429 YGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRL 488
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
+F++ G+ +L K Y+VIDE DR+++ G +L+ I MT+ ++ +Q + +
Sbjct: 489 LDFLENGNINLL---KCIYVVIDEADRLLDMGFEKQLRKI-----MTQVNKNKQLLFLTA 540
Query: 381 HFPE 384
+PE
Sbjct: 541 TWPE 544
Score = 198 (74.8 bits), Expect = 7.3e-35, Sum P(3) = 7.3e-35
Identities = 48/121 (39%), Positives = 70/121 (57%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
Y LIL PTREL +QV + I K P+K V GG+ Q+ L K I+VATPGRL
Sbjct: 429 YGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRL 488
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+F++ G+ +L K Y+VIDE DR+++ G +L+ I MT+ ++ +Q +A
Sbjct: 489 LDFLENGNINLL---KCIYVVIDEADRLLDMGFEKQLRKI-----MTQVNKNKQLLFLTA 540
Query: 998 T 998
T
Sbjct: 541 T 541
Score = 121 (47.7 bits), Expect = 7.7e-36, Sum P(3) = 7.7e-36
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219
E+I+ L K F PT IQ + P AL + KD++G AETGSGKTLAF +P I+ E
Sbjct: 297 ESILNYLNNK-FSEPTAIQKITWPIAL-SGKDLIGVAETGSGKTLAFVLPCFMHILKHKE 354
Score = 121 (47.7 bits), Expect = 7.3e-35, Sum P(3) = 7.3e-35
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
E+I+ L K F PT IQ + P AL + KD++G AETGSGKTLAF +P I+ E
Sbjct: 297 ESILNYLNNK-FSEPTAIQKITWPIAL-SGKDLIGVAETGSGKTLAFVLPCFMHILKHKE 354
Score = 113 (44.8 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 27/58 (46%), Positives = 33/58 (56%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL PTREL +QV + I K P+K V GG+ Q+ L K I+VATPG L
Sbjct: 431 LILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRL 488
Score = 62 (26.9 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDE-IPLYIKMFNSLEK 1277
N ++++HR GRT RA +G +++ D +P +K L K
Sbjct: 679 NTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKELIK 722
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 221 (82.9 bits), Expect = 8.2e-36, Sum P(3) = 8.2e-36
Identities = 62/231 (26%), Positives = 127/231 (54%)
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
T+VF + +R+ LL +L + +S+ Q QR+++L +F+ +L++TD+A+R
Sbjct: 396 TIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASR 455
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDI G++ VI+ ++P++ + YIHR GRTARA G ++ L+ DE L ++ NS +
Sbjct: 456 GLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLLKEIVNSNADR 515
Query: 1200 VDLPDFPIDESVLSLIKKRID-LAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLV 1258
L + V+ ++RID L ++I+ ++ +++R + L R + A + L
Sbjct: 516 T-LKQRLVAPEVVEAYRRRIDELEETIQQID---EEDRAEKEL-RIAEASMAKTQN-ALE 569
Query: 1259 LIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSL-IKKRIDLAKSIEYLE 1308
+ E+ P +++ E +++ ++ + + +K+ + AK+ E ++
Sbjct: 570 VGENGGAPAERRVWMMKESQIEKQRKREEKRQMKVDARKKAEAAKTPEDIQ 620
Score = 209 (78.6 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 49/168 (29%), Positives = 95/168 (56%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCK---HDEKDSYLYYFILQ-HP 544
T+ EEI +L ++++ P + + E L + I + ++++ + + +
Sbjct: 334 TMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAALVTRTFQ 393
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
T+VF + +R+ LL +L + +S+ Q QR+++L +F+ +L++TD+A
Sbjct: 394 TNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLA 453
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+RGLDI G++ VI+ ++P++ + YIHR GRTARA G ++ L+ DE
Sbjct: 454 SRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDE 501
Score = 189 (71.6 bits), Expect = 8.2e-36, Sum P(3) = 8.2e-36
Identities = 59/193 (30%), Positives = 89/193 (46%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L PTRELAIQV + ++V GG+ + Q L P ++VATPGRL
Sbjct: 223 LVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRL-- 280
Query: 940 FIQLGHFHLT---ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
+ H H + L I LV+DE DRM+E F + N L R+ +Q RQT +FS
Sbjct: 281 ---IDHLHNSPSFNLSNIEVLVLDEADRMLEEA-FRDQMNELIRLC----AQNRQTLLFS 332
Query: 997 ATLTHXXXXXXXXXXXX-XXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIG--ITKTL 1053
AT+T D ++K Q+ + I++ + D + +T+T
Sbjct: 333 ATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAALVTRTF 392
Query: 1054 TESKILCKHDEKD 1066
+ I+ +KD
Sbjct: 393 QTNTIVFVRTKKD 405
Score = 160 (61.4 bits), Expect = 1.1e-32, Sum P(3) = 1.1e-32
Identities = 51/152 (33%), Positives = 73/152 (48%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L PTRELAIQV + ++V GG+ + Q L P ++VATPGRL
Sbjct: 223 LVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRL-- 280
Query: 323 FIQLGHFHLT---ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
+ H H + L I LV+DE DRM+E F + N L R+ +Q RQT++ S
Sbjct: 281 ---IDHLHNSPSFNLSNIEVLVLDEADRMLEEA-FRDQMNELIRLC----AQNRQTLLFS 332
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
E +D + +P + F+ T T
Sbjct: 333 ATMTEE---IDELASMSLQKPVKIFINENTDT 361
Score = 125 (49.1 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 41/138 (29%), Positives = 65/138 (47%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L+L PTRELAIQV + ++V GG+ + Q L P ++VATPG L +
Sbjct: 223 LVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRL-I 281
Query: 1417 KRIDLAKSIEYLESKIKK-NRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
+ + S ++ + D LE+A +D LI+ A +R+ L S +
Sbjct: 282 DHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQM-----NELIRLCAQNRQTLLFSATMT 336
Query: 1476 SKRKELQSL-LGKSVQSY 1492
+ EL S+ L K V+ +
Sbjct: 337 EEIDELASMSLQKPVKIF 354
Score = 119 (46.9 bits), Expect = 8.2e-36, Sum P(3) = 8.2e-36
Identities = 34/132 (25%), Positives = 60/132 (45%)
Query: 703 VEVSELSANTNDPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLE--VDTSNN 760
VE +A + D++ + +++ E + N++ +D +
Sbjct: 83 VEDEAEAAEAEEKDEEEDDVQQLGGKETRDTVREKRKSGKSKKSQENEDFFSALID-GKS 141
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
D V ++ + + N+ I++A G+ PT IQ +P AL KDI A TG+GKT
Sbjct: 142 LDTSVNVS-FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTG-KDICACAATGTGKT 199
Query: 821 LAFGIPILTGIV 832
AF +PIL ++
Sbjct: 200 AAFVLPILERMI 211
Score = 118 (46.6 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 34/132 (25%), Positives = 60/132 (45%)
Query: 86 VEVSELSANTNDPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTYTSANKELLE--VDTSNN 143
VE +A + D++ + +++ E + N++ +D +
Sbjct: 83 VEDEAEAAEAEEKDEEEDDVQQLGGKETRDTVREKRKSGKSKKSQENEDFFSALID-GKS 141
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
D V ++ + + N+ I++A G+ PT IQ +P AL KDI A TG+GKT
Sbjct: 142 LDTSVNVS-FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTG-KDICACAATGTGKT 199
Query: 204 LAFGIPILTGIV 215
AF +PIL ++
Sbjct: 200 AAFVLPILERMI 211
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 222 (83.2 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 169 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 229 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 279
Score = 219 (82.2 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 51/129 (39%), Positives = 78/129 (60%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 169 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 229 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 280
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 281 PKEVRQLAE 289
Score = 188 (71.2 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 49/164 (29%), Positives = 81/164 (49%)
Query: 1059 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 317 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 376
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 377 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 436
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
G P +K L K ++ + I+ ++ L+ R
Sbjct: 437 GTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLVDHR 476
Score = 183 (69.5 bits), Expect = 6.1e-35, Sum P(3) = 6.1e-35
Identities = 42/121 (34%), Positives = 66/121 (54%)
Query: 526 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 317 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 376
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 377 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 436
Query: 642 G 642
G
Sbjct: 437 G 437
Score = 122 (48.0 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPG L
Sbjct: 169 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 226
Score = 116 (45.9 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 98 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 154
Score = 116 (45.9 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 98 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 154
Score = 65 (27.9 bits), Expect = 4.6e-23, Sum P(3) = 4.6e-23
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRTAR+ N+G P +K L K ++ + I+ ++ L+
Sbjct: 418 NSSEDYVHRIGRTARSTNKGTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLV 473
Query: 1295 KKR 1297
R
Sbjct: 474 DHR 476
Score = 48 (22.0 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 251 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 279
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 222 (83.2 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 169 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 229 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 279
Score = 219 (82.2 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 51/129 (39%), Positives = 78/129 (60%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 169 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 229 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 280
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 281 PKEVRQLAE 289
Score = 188 (71.2 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 49/164 (29%), Positives = 81/164 (49%)
Query: 1059 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 317 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 376
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 377 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 436
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
G P +K L K ++ + I+ ++ L+ R
Sbjct: 437 GTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLVDHR 476
Score = 183 (69.5 bits), Expect = 6.1e-35, Sum P(3) = 6.1e-35
Identities = 42/121 (34%), Positives = 66/121 (54%)
Query: 526 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 317 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 376
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 377 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 436
Query: 642 G 642
G
Sbjct: 437 G 437
Score = 122 (48.0 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPG L
Sbjct: 169 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 226
Score = 116 (45.9 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 98 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 154
Score = 116 (45.9 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 98 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 154
Score = 65 (27.9 bits), Expect = 4.6e-23, Sum P(3) = 4.6e-23
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRTAR+ N+G P +K L K ++ + I+ ++ L+
Sbjct: 418 NSSEDYVHRIGRTARSTNKGTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLV 473
Query: 1295 KKR 1297
R
Sbjct: 474 DHR 476
Score = 48 (22.0 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 251 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 279
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 222 (83.2 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 169 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 229 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 279
Score = 219 (82.2 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 51/129 (39%), Positives = 78/129 (60%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 169 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 229 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 280
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 281 PKEVRQLAE 289
Score = 188 (71.2 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 49/164 (29%), Positives = 81/164 (49%)
Query: 1059 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 317 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 376
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 377 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 436
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
G P +K L K ++ + I+ ++ L+ R
Sbjct: 437 GTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLVDHR 476
Score = 183 (69.5 bits), Expect = 6.1e-35, Sum P(3) = 6.1e-35
Identities = 42/121 (34%), Positives = 66/121 (54%)
Query: 526 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 317 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 376
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 377 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 436
Query: 642 G 642
G
Sbjct: 437 G 437
Score = 122 (48.0 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPG L
Sbjct: 169 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 226
Score = 116 (45.9 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 98 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 154
Score = 116 (45.9 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 98 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 154
Score = 65 (27.9 bits), Expect = 4.6e-23, Sum P(3) = 4.6e-23
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRTAR+ N+G P +K L K ++ + I+ ++ L+
Sbjct: 418 NSSEDYVHRIGRTARSTNKGTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLV 473
Query: 1295 KKR 1297
R
Sbjct: 474 DHR 476
Score = 48 (22.0 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 251 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 279
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 222 (83.2 bits), Expect = 8.8e-36, Sum P(3) = 8.8e-36
Identities = 55/178 (30%), Positives = 94/178 (52%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGRTLVFCNSISSVK 1091
+ P ++ L + + L S +L + D K + L Y +++ +T+VF + +
Sbjct: 292 LTEPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFVATKHHAE 351
Query: 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151
LT+LL S ++++++Q R NL +F S L+ TD+AARGLDIP +++VI+
Sbjct: 352 YLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVIN 411
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE 1209
Y P ++++HR GR ARA G L+ DE+P + + L + V L P +E
Sbjct: 412 YSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLAR-PCEE 468
Score = 215 (80.7 bits), Expect = 1.2e-33, Sum P(4) = 1.2e-33
Identities = 50/156 (32%), Positives = 85/156 (54%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGRTLVFCNSISSVK 558
+ P ++ L + + L S +L + D K + L Y +++ +T+VF + +
Sbjct: 292 LTEPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFVATKHHAE 351
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
LT+LL S ++++++Q R NL +F S L+ TD+AARGLDIP +++VI+
Sbjct: 352 YLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVIN 411
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
Y P ++++HR GR ARA G L+ DE+P
Sbjct: 412 YSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVP 447
Score = 202 (76.2 bits), Expect = 8.8e-36, Sum P(3) = 8.8e-36
Identities = 48/121 (39%), Positives = 70/121 (57%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
ALIL+PTRELA+Q + GK+T +K A ++GG E Q L++ P I++ATPGRL
Sbjct: 168 ALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL- 226
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ + +L + Y+V DE DR+ E G +L+ I+ R+ QT +FSAT
Sbjct: 227 --VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP-----GGHQTVLFSAT 279
Query: 999 L 999
L
Sbjct: 280 L 280
Score = 198 (74.8 bits), Expect = 1.2e-33, Sum P(4) = 1.2e-33
Identities = 49/135 (36%), Positives = 74/135 (54%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
ALIL+PTRELA+Q + GK+T +K A ++GG E Q L++ P I++ATPGRL
Sbjct: 168 ALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL- 226
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ + +L + Y+V DE DR+ E G +L+ I+ R+ QT++ S
Sbjct: 227 --VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP-----GGHQTVLFSAT 279
Query: 382 FPELKNILDRVTMTE 396
P+L R +TE
Sbjct: 280 LPKLLVEFARAGLTE 294
Score = 146 (56.5 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 1346 ESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 1405
++R+ + ALIL+PTRELA+Q + GK+T +K A ++GG E Q L++ P
Sbjct: 158 KARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPD 217
Query: 1406 ILVATPGALSLKRIDL---AKSIEYL 1428
I++ATPG L +++ +S+EY+
Sbjct: 218 IIIATPGRLVHVAVEMNLKLQSVEYV 243
Score = 108 (43.1 bits), Expect = 8.8e-36, Sum P(3) = 8.8e-36
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+ + + +KG+K PT IQ +P +L KD+V A TGSGKT F +P+
Sbjct: 106 VFKGIMKKGYKVPTPIQRKTIP-VILDGKDVVAMARTGSGKTACFLLPM 153
Score = 108 (43.1 bits), Expect = 8.8e-36, Sum P(3) = 8.8e-36
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+ + + +KG+K PT IQ +P +L KD+V A TGSGKT F +P+
Sbjct: 106 VFKGIMKKGYKVPTPIQRKTIP-VILDGKDVVAMARTGSGKTACFLLPM 153
Score = 79 (32.9 bits), Expect = 6.7e-21, Sum P(3) = 6.7e-21
Identities = 25/94 (26%), Positives = 42/94 (44%)
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN---WLHRSGRTARANNEG 1254
+K++L F ++ ++ I L++ I + P +LHR GR ARA G
Sbjct: 376 RKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSG 435
Query: 1255 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE 1288
L+ DE+P + + L + V L P +E
Sbjct: 436 TAYSLVAPDEVPYLLDLHLFLGRSVTLAR-PCEE 468
Score = 37 (18.1 bits), Expect = 1.2e-33, Sum P(4) = 1.2e-33
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 701 SQVEVSELSANTNDPDDQVNKTEEIQSD 728
++ + E++A++ DP Q+ + + Q D
Sbjct: 572 TRTTIFEINASSKDPSSQMMRAKR-QRD 598
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 218 (81.8 bits), Expect = 7.9e-35, Sum P(3) = 7.9e-35
Identities = 67/201 (33%), Positives = 108/201 (53%)
Query: 458 IGITKTLTESKILCKHD-EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516
+G ++T+ ++I+ + K + L+ L+ PG L E ++LN P V L K
Sbjct: 174 LGFSETI--NRIVAEARWRKQTMLFSATLESPGVQLFAE--EVLN--EP--VFLESKPSR 225
Query: 517 TKTLTESKILCKHDEKDSYLYYFI--LQHPG--RTLVFCNSISSVKRLTQLLTMLKCSPL 572
+ + L D+ + L + L+ G RT+VF N +V+ L+ L + +
Sbjct: 226 KEKAVIHQWLHLADDANHKLNLLVNTLKQEGVERTVVFANKRETVQYLSGKLYAEELPCV 285
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
L M Q +R K ++RF+ +L+ATDVAARGLDI I HVI++ +PR +IYIHR
Sbjct: 286 WLEGKMPQDKRNKAIERFKKGEVKVLVATDVAARGLDIDDISHVINFDMPRKVDIYIHRI 345
Query: 633 GRTARANNEGLTVVLIESDEI 653
GRT RA +G + L+E+ ++
Sbjct: 346 GRTGRAGKKGTAISLVEAHDM 366
Score = 212 (79.7 bits), Expect = 8.8e-36, Sum P(3) = 8.8e-36
Identities = 46/108 (42%), Positives = 68/108 (62%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
RT+VF N +V+ L+ L + + L M Q +R K ++RF+ +L+ATDVAA
Sbjct: 259 RTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVLVATDVAA 318
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
RGLDI I HVI++ +PR +IYIHR GRT RA +G + L+E+ ++
Sbjct: 319 RGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDM 366
Score = 188 (71.2 bits), Expect = 8.8e-36, Sum P(3) = 8.8e-36
Identities = 51/120 (42%), Positives = 66/120 (55%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LIL PTRELAIQ+ + T +K + GG++ IL ILVATPGRL E
Sbjct: 89 LILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTTDILVATPGRLLE 148
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
+I+ F E I LV+DE DRM++ G F E N R+ + E +QT +FSATL
Sbjct: 149 YIENEQFDARE---IEILVLDEADRMLDLG-FSETIN---RI-VAEARWRKQTMLFSATL 200
Score = 172 (65.6 bits), Expect = 7.9e-35, Sum P(3) = 7.9e-35
Identities = 48/117 (41%), Positives = 63/117 (53%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LIL PTRELAIQ+ + T +K + GG++ IL ILVATPGRL E
Sbjct: 89 LILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTTDILVATPGRLLE 148
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
+I+ F E I LV+DE DRM++ G F E N R+ + E +QTM+ S
Sbjct: 149 YIENEQFDARE---IEILVLDEADRMLDLG-FSETIN---RI-VAEARWRKQTMLFS 197
Score = 115 (45.5 bits), Expect = 8.8e-36, Sum P(3) = 8.8e-36
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+F++ ++ ++ + G+ PT IQ +V+P A++ KD++ +A TG+GKT AF +PI
Sbjct: 17 QFDLDSELLASINKIGYTKPTSIQELVIPQAMVG-KDVLASAPTGTGKTAAFLLPI 71
Score = 115 (45.5 bits), Expect = 8.8e-36, Sum P(3) = 8.8e-36
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+F++ ++ ++ + G+ PT IQ +V+P A++ KD++ +A TG+GKT AF +PI
Sbjct: 17 QFDLDSELLASINKIGYTKPTSIQELVIPQAMVG-KDVLASAPTGTGKTAAFLLPI 71
Score = 106 (42.4 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 25/58 (43%), Positives = 31/58 (53%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL PTRELAIQ+ + T +K + GG++ IL ILVATPG L
Sbjct: 89 LILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTTDILVATPGRL 146
Score = 64 (27.6 bits), Expect = 3.6e-20, Sum P(3) = 3.6e-20
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEI 1265
D ++HR GRT RA +G + L+E+ ++
Sbjct: 339 DIYIHRIGRTGRAGKKGTAISLVEAHDM 366
Score = 48 (22.0 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
Identities = 37/119 (31%), Positives = 48/119 (40%)
Query: 310 PHILVATPGRLWEFIQLGHF--HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 367
P +L+ TP R IQ+G LTEL KI VI T + H L + D + T
Sbjct: 86 PRVLILTPTRELA-IQIGEDSEQLTELTKIKTGVI--TGGVNYGSHADILTSTTDILVAT 142
Query: 368 --------ETSQPRQTMIESGHFPELKNILD--------RVTMTETSQPRQTFVFSATL 410
E Q IE E +LD R+ + E +QT +FSATL
Sbjct: 143 PGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRI-VAEARWRKQTMLFSATL 200
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 229 (85.7 bits), Expect = 8.9e-36, Sum P(3) = 8.9e-36
Identities = 58/151 (38%), Positives = 94/151 (62%)
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLP--LHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
T++F + V+ ++QLL C L ++ +++Q R + L FR SIL+ TDVA
Sbjct: 435 TILFVPTRHHVEYISQLLR--DCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVA 492
Query: 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197
ARG+DIP + +VI+Y +P +S+I++HR GRTARA N+G ++ +E+P + + L
Sbjct: 493 ARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLG 552
Query: 1198 KKVDLPDFPIDESVLSLIKKR-IDLAKSIEY 1227
KK+ L P+ +S++ ++KKR ID K EY
Sbjct: 553 KKILLT--PMYDSLVDVMKKRWIDEGKP-EY 580
Score = 202 (76.2 bits), Expect = 6.5e-31, Sum P(4) = 6.5e-31
Identities = 63/212 (29%), Positives = 110/212 (51%)
Query: 448 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGRTLCEEIQDLLNIKS 504
+P +V L + +++ L + K+ ++++ L Y I++ P T E++Q L N +
Sbjct: 336 NPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLAT-SEQLQKLQNSNN 394
Query: 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 564
D ++ K K + K L T++F + V+ ++QLL
Sbjct: 395 EADSDSDDENDRQKKRRNFKK--EKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLL 452
Query: 565 TMLKCSPLP--LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 622
C L ++ +++Q R + L FR SIL+ TDVAARG+DIP + +VI+Y +P
Sbjct: 453 R--DCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVINYTLP 510
Query: 623 RTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
+S+I++HR GRTARA N+G ++ +E+P
Sbjct: 511 GSSKIFVHRVGRTARAGNKGWAYSIVAENELP 542
Score = 179 (68.1 bits), Expect = 8.9e-36, Sum P(3) = 8.9e-36
Identities = 45/121 (37%), Positives = 68/121 (56%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
A+IL+P+RELA+Q N D + T ++ + GG S E+Q ++ P +++ATPGR
Sbjct: 210 AVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGR-- 267
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F+ L +L + Y+V DE DR+ E G +L +L + T RQT +FSAT
Sbjct: 268 -FLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTT-----RQTLLFSAT 321
Query: 999 L 999
L
Sbjct: 322 L 322
Score = 165 (63.1 bits), Expect = 6.5e-31, Sum P(4) = 6.5e-31
Identities = 42/122 (34%), Positives = 66/122 (54%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
A+IL+P+RELA+Q N D + T ++ + GG S E+Q ++ P +++ATPGR
Sbjct: 210 AVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGR-- 267
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
F+ L +L + Y+V DE DR+ E G +L +L + T RQT++ S
Sbjct: 268 -FLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTT-----RQTLLFSAT 321
Query: 382 FP 383
P
Sbjct: 322 LP 323
Score = 126 (49.4 bits), Expect = 8.9e-36, Sum P(3) = 8.9e-36
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
T+N E + + F + + ++ + +KGF+ PT IQ +P L +R DIVG A TG
Sbjct: 126 TNNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSR-DIVGMARTG 184
Query: 817 SGKTLAFGIPIL 828
SGKT AF +P++
Sbjct: 185 SGKTAAFILPMV 196
Score = 126 (49.4 bits), Expect = 6.5e-31, Sum P(4) = 6.5e-31
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
T+N E + + F + + ++ + +KGF+ PT IQ +P L +R DIVG A TG
Sbjct: 126 TNNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSR-DIVGMARTG 184
Query: 200 SGKTLAFGIPIL 211
SGKT AF +P++
Sbjct: 185 SGKTAAFILPMV 196
Score = 126 (49.4 bits), Expect = 0.00090, P = 0.00090
Identities = 54/188 (28%), Positives = 86/188 (45%)
Query: 1251 NNEGLTLVLIESDEIPLYIKMFNSLEK----KVDLPDFPIDESVLSLIKKRIDLAKSIEY 1306
N G T + D++ Y N+LEK K P F + + VL+ IK+ K
Sbjct: 106 NASGKTQTGDDEDDVNEYFST-NNLEKTKHKKGSFPSFGLSKIVLNNIKR-----KGFRQ 159
Query: 1307 LESKIKKNRPDNWLEKAAKDMXXXXXXEN--LIQPNQLLIFESRNLRYSWDALILAPTRE 1364
+K P + M + I P + +S + + A+IL+P+RE
Sbjct: 160 PTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILP-MVEKLKSHSGKIGARAVILSPSRE 218
Query: 1365 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA-LSLK---RID 1420
LA+Q N D + T ++ + GG S E+Q ++ P +++ATPG L LK +D
Sbjct: 219 LAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLD 278
Query: 1421 LAKSIEYL 1428
L KS+EY+
Sbjct: 279 L-KSVEYV 285
Score = 100 (40.3 bits), Expect = 3.2e-22, Sum P(3) = 3.2e-22
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR-I 1298
++HR GRTARA N+G ++ +E+P + + L KK+ L P+ +S++ ++KKR I
Sbjct: 516 FVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGKKILLT--PMYDSLVDVMKKRWI 573
Query: 1299 DLAKSIEY 1306
D K EY
Sbjct: 574 DEGKP-EY 580
Score = 42 (19.8 bits), Expect = 6.5e-31, Sum P(4) = 6.5e-31
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 880 LILAPTRELAIQV-QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
++L P + + V + +D GK P + +S K+L +L CP + V G L+
Sbjct: 555 ILLTPMYDSLVDVMKKRWIDEGK--P-EYQFQPPKLSYTKRL-VLGSCPRLDVEGLGDLY 610
Query: 939 EFIQLGHFHL 948
+ + +F L
Sbjct: 611 KNLMSSNFDL 620
Score = 42 (19.8 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
+ E G +L +L + T RQT +FSATL
Sbjct: 293 LFEMGFQEQLNELLASLPTT-----RQTLLFSATL 322
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 227 (85.0 bits), Expect = 3.3e-21, Sum P(3) = 3.3e-21
Identities = 61/190 (32%), Positives = 95/190 (50%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA+Q+Q GK + ++ CV GG Q+R L + I +ATPGRL +
Sbjct: 204 LVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLID 263
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ G T L ++ YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 264 MLEAGK---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 315
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQD 442
P K + ++T + P Q + S L D +K L+
Sbjct: 316 P--KEV-QQLTRDYLNDPIQVTIGSLELA----ASHTITQLVEVIDEFSKRDRLVKHLES 368
Query: 443 LLNIKSPKIV 452
LN K KI+
Sbjct: 369 ALNEKDNKIL 378
Score = 221 (82.9 bits), Expect = 9.6e-36, Sum P(3) = 9.6e-36
Identities = 48/119 (40%), Positives = 73/119 (61%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA+Q+Q GK + ++ CV GG Q+R L + I +ATPGRL +
Sbjct: 204 LVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLID 263
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
++ G T L ++ YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 264 MLEAGK---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 314
Score = 192 (72.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 46/138 (33%), Positives = 68/138 (49%)
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 567
++L IT+ + K D +L + + + LVF ++ + +T L
Sbjct: 338 LELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKILVFASTKRTCDEITTYLRSD 397
Query: 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627
L +H Q +R LD FR SI++ATDVAARG+D+ GI HVI+Y +P E
Sbjct: 398 GWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIED 457
Query: 628 YIHRSGRTARANNEGLTV 645
Y+HR GRT R G +
Sbjct: 458 YVHRIGRTGRGGASGTAI 475
Score = 191 (72.3 bits), Expect = 9.6e-36, Sum P(3) = 9.6e-36
Identities = 46/138 (33%), Positives = 68/138 (49%)
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
++L IT+ + K D +L + + + LVF ++ + +T L
Sbjct: 338 LELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKILVFASTKRTCDEITTYLRSD 397
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
L +H Q +R LD FR SI++ATDVAARG+D+ GI HVI+Y +P E
Sbjct: 398 GWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIED 457
Query: 1161 YIHRSGRTARANNEGLTL 1178
Y+HR GRT R G +
Sbjct: 458 YVHRIGRTGRGGASGTAI 475
Score = 122 (48.0 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA+Q+Q GK + ++ CV GG Q+R L + I +ATPG L
Sbjct: 204 LVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRL 261
Score = 110 (43.8 bits), Expect = 9.6e-36, Sum P(3) = 9.6e-36
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
P+ +++ + +GF PT IQ P AL R D++G A TGSGKTL++ +P + I
Sbjct: 135 PDYVLQEVKDQGFPKPTPIQCQGWPMALSGR-DMIGIAATGSGKTLSYCLPSIVHI 189
Score = 110 (43.8 bits), Expect = 9.6e-36, Sum P(3) = 9.6e-36
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
P+ +++ + +GF PT IQ P AL R D++G A TGSGKTL++ +P + I
Sbjct: 135 PDYVLQEVKDQGFPKPTPIQCQGWPMALSGR-DMIGIAATGSGKTLSYCLPSIVHI 189
Score = 44 (20.5 bits), Expect = 3.3e-21, Sum P(3) = 3.3e-21
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTL 1257
ID+ K I ++ + ++++HR GRT R G +
Sbjct: 438 IDV-KGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAI 475
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 211 (79.3 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 59/199 (29%), Positives = 102/199 (51%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRL 1093
+K P+ V + + +++S K+ L F+ + ++F + ++ +
Sbjct: 202 MKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEV 261
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
+ L + L+ MNQ R + L+R +D IL+ATDVAARGLD+ I V++Y
Sbjct: 262 AEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYD 321
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLS 1213
+P SE Y+HR GRT RA G L+ +E+ E L + ++ K+ +P+ + + L
Sbjct: 322 IPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM--KLTIPEVELPNAEL- 378
Query: 1214 LIKKRID--LAKSIEYLES 1230
L K+R++ AK + LES
Sbjct: 379 LGKRRLEKFAAKVQQQLES 397
Score = 194 (73.4 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 51/150 (34%), Positives = 80/150 (53%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
L+LAPTRELA+QV + D K+ V V + GG + QLR L + P I+V TPGRL
Sbjct: 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLL 137
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ ++ G L+ K++ LV+DE D M+ G +++ I M + + QT + S
Sbjct: 138 DHLKRGTLDLS---KLSGLVLDEADEMLRMGFIEDVETI-----MAQIPEGHQTALFSAT 189
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSATLT 411
PE + R+T +P++ + S+ T
Sbjct: 190 MPEA---IRRITRRFMKEPQEVRIQSSVTT 216
Score = 193 (73.0 bits), Expect = 1.0e-33, Sum P(3) = 1.0e-33
Identities = 49/165 (29%), Positives = 84/165 (50%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRT 547
T+ E I+ + +K P+ V + + +++S K+ L F+ +
Sbjct: 189 TMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAA 248
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++F + ++ + + L + L+ MNQ R + L+R +D IL+ATDVAARG
Sbjct: 249 IIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARG 308
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
LD+ I V++Y +P SE Y+HR GRT RA G ++ +E+ E
Sbjct: 309 LDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353
Score = 191 (72.3 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
L+LAPTRELA+QV + D K+ V V + GG + QLR L + P I+V TPGRL
Sbjct: 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLL 137
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ ++ G L+ K++ LV+DE D M+ G +++ I M + + QT +FSAT
Sbjct: 138 DHLKRGTLDLS---KLSGLVLDEADEMLRMGFIEDVETI-----MAQIPEGHQTALFSAT 189
Query: 999 L 999
+
Sbjct: 190 M 190
Score = 131 (51.2 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 34/72 (47%), Positives = 44/72 (61%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
L+LAPTRELA+QV + D K+ V V + GG + QLR L + P I+V TPG L
Sbjct: 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLL 137
Query: 1415 -SLKR--IDLAK 1423
LKR +DL+K
Sbjct: 138 DHLKRGTLDLSK 149
Score = 120 (47.3 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
I+ AL G++ P+ IQ+ +P LL +D++G A+TGSGKT AF +P+L + +L+ P
Sbjct: 17 ILEALNDLGYEKPSPIQAECIPH-LLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAP 75
Score = 120 (47.3 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
I+ AL G++ P+ IQ+ +P LL +D++G A+TGSGKT AF +P+L + +L+ P
Sbjct: 17 ILEALNDLGYEKPSPIQAECIPH-LLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAP 75
Score = 78 (32.5 bits), Expect = 8.1e-22, Sum P(3) = 8.1e-22
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
++++HR GRT RA G L+ +E+ E L + ++ K+ +P+ + + L L K+R
Sbjct: 327 ESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM--KLTIPEVELPNAEL-LGKRR 383
Query: 1298 ID--LAKSIEYLES 1309
++ AK + LES
Sbjct: 384 LEKFAAKVQQQLES 397
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 232 (86.7 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 58/189 (30%), Positives = 98/189 (51%)
Query: 1035 IKSPKIVDLTEKIG--ITKTLTESKILCKHDEKDSYLYYFILQHP--GRTLVFCNSISSV 1090
+ +P VDL + +T I+ + S + + +H G+ +VF +
Sbjct: 303 LNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDA 362
Query: 1091 KRLTQLLTM-LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 1149
RL+ L KC L H ++Q QR + L FRD + +IL+ATDVAARGLD+P ++ +
Sbjct: 363 DRLSYALARSFKCEAL--HGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLI 420
Query: 1150 IHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL--EKKVDLPDFPI 1207
IHY +P +E ++HR+GRT RA +G + +LI S + +K+ + +LP +
Sbjct: 421 IHYELPNNTETFVHRTGRTGRAGKKG-SAILIYSQDQSRAVKIIEREVGSRFTELPSIAV 479
Query: 1208 DESVLSLIK 1216
+ S+ +
Sbjct: 480 ERGSASMFE 488
Score = 231 (86.4 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 52/156 (33%), Positives = 85/156 (54%)
Query: 502 IKSPKIVDLTEKIG--ITKTLTESKILCKHDEKDSYLYYFILQHP--GRTLVFCNSISSV 557
+ +P VDL + +T I+ + S + + +H G+ +VF +
Sbjct: 303 LNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDA 362
Query: 558 KRLTQLLTM-LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616
RL+ L KC L H ++Q QR + L FRD + +IL+ATDVAARGLD+P ++ +
Sbjct: 363 DRLSYALARSFKCEAL--HGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLI 420
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
IHY +P +E ++HR+GRT RA +G +++ D+
Sbjct: 421 IHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQ 456
Score = 169 (64.5 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 42/126 (33%), Positives = 75/126 (59%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
RN L L+LAPTRELA QV+ ++ + C+ GG +Q+R L+ + V T
Sbjct: 177 RNPL-CLVLAPTRELARQVEKEFRESAP--SLDTICLYGGTPIGQQMRQLDYGVDVAVGT 233
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGR+ + ++ G +L+E + ++V+DE D+M++ G +++ IL+++ + RQ+
Sbjct: 234 PGRVIDLMKRGALNLSE---VQFVVLDEADQMLQVGFAEDVEIILEKLP-----EKRQSM 285
Query: 994 VFSATL 999
+FSAT+
Sbjct: 286 MFSATM 291
Score = 159 (61.0 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 41/127 (32%), Positives = 73/127 (57%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
RN L L+LAPTRELA QV+ ++ + C+ GG +Q+R L+ + V T
Sbjct: 177 RNPL-CLVLAPTRELARQVEKEFRESAP--SLDTICLYGGTPIGQQMRQLDYGVDVAVGT 233
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+ + ++ G +L+E + ++V+DE D+M++ G +++ IL+++ + RQ+M
Sbjct: 234 PGRVIDLMKRGALNLSE---VQFVVLDEADQMLQVGFAEDVEIILEKLP-----EKRQSM 285
Query: 377 IESGHFP 383
+ S P
Sbjct: 286 MFSATMP 292
Score = 122 (48.0 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
PE I++AL KG + IQ V+ A+ R D++G A TG+GKTLAFGIPI+ I+
Sbjct: 113 PE-IVKALSSKGIEKLFPIQKAVLEPAMEGR-DMIGRARTGTGKTLAFGIPIIDKII 167
Score = 122 (48.0 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
PE I++AL KG + IQ V+ A+ R D++G A TG+GKTLAFGIPI+ I+
Sbjct: 113 PE-IVKALSSKGIEKLFPIQKAVLEPAMEGR-DMIGRARTGTGKTLAFGIPIIDKII 167
Score = 90 (36.7 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L+LAPTRELA QV+ ++ + C+ GG +Q+R L+ + V TPG +
Sbjct: 182 LVLAPTRELARQVEKEFRESAP--SLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRV-- 237
Query: 1417 KRIDLAK 1423
IDL K
Sbjct: 238 --IDLMK 242
Score = 67 (28.6 bits), Expect = 3.2e-18, Sum P(3) = 3.2e-18
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL--EKKVDLPDFPIDESVLS 1292
N + ++HR+GRT RA +G + +LI S + +K+ + +LP ++ S
Sbjct: 427 NNTETFVHRTGRTGRAGKKG-SAILIYSQDQSRAVKIIEREVGSRFTELPSIAVERGSAS 485
Query: 1293 LIK 1295
+ +
Sbjct: 486 MFE 488
Score = 39 (18.8 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
M++ G +++ IL+++ + RQ+ +FSAT+
Sbjct: 262 MLQVGFAEDVEIILEKLP-----EKRQSMMFSATM 291
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 261 (96.9 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 66/202 (32%), Positives = 117/202 (57%)
Query: 1027 KRLQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQH-PGRTL 1081
K ++DL L++K+P+ V + EK + TL ++ I+C+ +K S LY F+ H +++
Sbjct: 258 KSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSI 317
Query: 1082 VFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
VF +S V+ L ++ L+ S L LH Q +R++ + F + ++L ATD+AAR
Sbjct: 318 VFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAAR 377
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG-LTLVLIESDEIPLYIKMFNSLEK 1198
GLD P + V+ + P + YIHR+GRTAR +G L+L+ S+E + ++ L+K
Sbjct: 378 GLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGMVQQL---LQK 434
Query: 1199 KVDLPDFPIDESVLSLIKKRID 1220
KV + + I+ L ++K+++
Sbjct: 435 KVPVKEIKINPEKLIDVQKKLE 456
Score = 241 (89.9 bits), Expect = 1.5e-31, Sum P(4) = 1.5e-31
Identities = 58/170 (34%), Positives = 99/170 (58%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQH-PG 545
T + ++DL L++K+P+ V + EK + TL ++ I+C+ +K S LY F+ H
Sbjct: 255 TQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKK 314
Query: 546 RTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++VF +S V+ L ++ L+ S L LH Q +R++ + F + ++L ATD+
Sbjct: 315 KSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVRKRAAVLFATDI 374
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG-LTVVLIESDE 652
AARGLD P + V+ + P + YIHR+GRTAR +G ++L+ S+E
Sbjct: 375 AARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEE 424
Score = 154 (59.3 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 43/125 (34%), Positives = 65/125 (52%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L LI++PTRELA Q + GK ++GG + + +N +ILV TPGR
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200
Query: 937 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L + + + FH T L LV+DE DR+++ G + I++ + + RQT +F
Sbjct: 201 LLQHMDETICFHATNL---QMLVLDEADRILDMGFADTMNAIIENLP-----KKRQTLLF 252
Query: 996 SATLT 1000
SAT T
Sbjct: 253 SATQT 257
Score = 139 (54.0 bits), Expect = 1.5e-31, Sum P(4) = 1.5e-31
Identities = 43/147 (29%), Positives = 72/147 (48%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L LI++PTRELA Q + GK ++GG + + +N +ILV TPGR
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200
Query: 320 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
L + + + FH T L LV+DE DR+++ G + I++ + + RQT++
Sbjct: 201 LLQHMDETICFHATNL---QMLVLDEADRILDMGFADTMNAIIENLP-----KKRQTLLF 252
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFV 405
S + K++ D ++ P +V
Sbjct: 253 SA--TQTKSVKDLARLS-LKNPEYVWV 276
Score = 114 (45.2 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 133 KELLEVDTSNNEDMFV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
+E++ N E + V ++ + F + + ++ L + ++ T+IQ + AL KD
Sbjct: 50 REVISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KD 108
Query: 192 IVGAAETGSGKTLAFGIPILTGI 214
++GAA+TGSGKTLAF +P+L +
Sbjct: 109 VLGAAKTGSGKTLAFLVPVLEAL 131
Score = 114 (45.2 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 750 KELLEVDTSNNEDMFV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
+E++ N E + V ++ + F + + ++ L + ++ T+IQ + AL KD
Sbjct: 50 REVISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KD 108
Query: 809 IVGAAETGSGKTLAFGIPILTGI 831
++GAA+TGSGKTLAF +P+L +
Sbjct: 109 VLGAAKTGSGKTLAFLVPVLEAL 131
Score = 95 (38.5 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 38/131 (29%), Positives = 59/131 (45%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LI++PTRELA Q + GK ++GG + + +N +ILV TPG L L
Sbjct: 145 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRL-L 202
Query: 1417 KRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKA 1473
+ +D ++I + + ++ + D L+ D ENL PK R+ L S
Sbjct: 203 QHMD--ETICFHATNLQMLVLDEADRILDMGFAD-TMNAIIENL--PK--KRQTLLFSAT 255
Query: 1474 LVSKRKELQSL 1484
K+L L
Sbjct: 256 QTKSVKDLARL 266
Score = 80 (33.2 bits), Expect = 1.0e-17, Sum P(4) = 1.0e-17
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 1238 DNWLHRSGRTARANNEG-LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
+ ++HR+GRTAR +G L+L+ S+E + ++ L+KKV + + I+ L ++K
Sbjct: 397 NTYIHRAGRTARYKEDGEALLILLPSEEKGMVQQL---LQKKVPVKEIKINPEKLIDVQK 453
Query: 1297 RID 1299
+++
Sbjct: 454 KLE 456
Score = 73 (30.8 bits), Expect = 1.0e-17, Sum P(4) = 1.0e-17
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 438 KRLQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQHPGR--- 490
K ++DL L++K+P+ V + EK + TL ++ I+C+ +K S LY F+ H +
Sbjct: 258 KSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSI 317
Query: 491 ---TLCEEIQDLLNI 502
+ C+E+Q L +
Sbjct: 318 VFFSSCKEVQYLYRV 332
Score = 42 (19.8 bits), Expect = 1.5e-31, Sum P(4) = 1.5e-31
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 1455 ENLIQPKANSRENALMSKALVSKRKELQSLLGK 1487
+ L+Q K +E + + L+ +K+L+S L +
Sbjct: 429 QQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQ 461
Score = 38 (18.4 bits), Expect = 3.0e-21, Sum P(4) = 3.0e-21
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 401 RQTFVFSATLT 411
RQT +FSAT T
Sbjct: 247 RQTLLFSATQT 257
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 232 (86.7 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 56/184 (30%), Positives = 99/184 (53%)
Query: 1053 LTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
L + ++C D++ L+ F+ ++ + + VF +S +SVK +LL + L LH
Sbjct: 264 LEQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQ 323
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
Q++R F + IL+ TDVAARGLDIP ++ +I + P YIHR GRTAR
Sbjct: 324 KQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARG 383
Query: 1172 NN-EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID-LAKSIEYLE 1229
+G +L+ + +E+ +++ + KV L ++ E+ ++ ++ +++ L KS YL
Sbjct: 384 TKGKGKSLMFLTPNELG-FLRYLKA--SKVPLNEYEFPENKIANVQSQLEKLIKSNYYLH 440
Query: 1230 SKIK 1233
K
Sbjct: 441 QTAK 444
Score = 208 (78.3 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 58/219 (26%), Positives = 109/219 (49%)
Query: 445 NIKSPKIVDLTEKI---GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLN 501
N+K+ I+D ++I G + + + ++++ S L+ T +++DL
Sbjct: 189 NLKA-LIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLF-------SATQTTKVEDLAR 240
Query: 502 IK---SPKIVDLTEKIGITKT--LTESKILCKHDEKDSYLYYFILQHPGRTL-VFCNSIS 555
I P +++ + + L + ++C D++ L+ F+ ++ + + VF +S +
Sbjct: 241 ISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCN 300
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615
SVK +LL + L LH Q++R F + IL+ TDVAARGLDIP ++
Sbjct: 301 SVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDW 360
Query: 616 VIHYHVPRTSEIYIHRSGRTARANN-EGLTVVLIESDEI 653
+I + P YIHR GRTAR +G +++ + +E+
Sbjct: 361 IIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNEL 399
Score = 158 (60.7 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 44/132 (33%), Positives = 73/132 (55%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
K RN +++ PTRELA+Q+ + ++ V+GG + ++ L K ++L+
Sbjct: 110 KPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNMLI 169
Query: 932 ATPGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 988
ATPGRL L H T+ ++K + L+IDE DR++E G E++ I+ ++ E
Sbjct: 170 ATPGRL-----LDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQII-KILPNED-- 221
Query: 989 PRQTFVFSATLT 1000
RQ+ +FSAT T
Sbjct: 222 -RQSMLFSATQT 232
Score = 143 (55.4 bits), Expect = 4.3e-34, Sum P(3) = 4.3e-34
Identities = 41/128 (32%), Positives = 70/128 (54%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
K RN +++ PTRELA+Q+ + ++ V+GG + ++ L K ++L+
Sbjct: 110 KPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNMLI 169
Query: 315 ATPGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 371
ATPGRL L H T+ ++K + L+IDE DR++E G E++ I+ ++ E
Sbjct: 170 ATPGRL-----LDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQII-KILPNED-- 221
Query: 372 PRQTMIES 379
RQ+M+ S
Sbjct: 222 -RQSMLFS 228
Score = 127 (49.8 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V+ E +K + P ++A+ + GF T T +Q+ +P LLA +D++GAA+TGSGKTLAF
Sbjct: 41 VEKFEELKLSQPT--LKAIEKMGFTTMTSVQARTIPP-LLAGRDVLGAAKTGSGKTLAFL 97
Query: 208 IPIL 211
IP +
Sbjct: 98 IPAI 101
Score = 127 (49.8 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V+ E +K + P ++A+ + GF T T +Q+ +P LLA +D++GAA+TGSGKTLAF
Sbjct: 41 VEKFEELKLSQPT--LKAIEKMGFTTMTSVQARTIPP-LLAGRDVLGAAKTGSGKTLAFL 97
Query: 825 IPIL 828
IP +
Sbjct: 98 IPAI 101
Score = 88 (36.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 36/140 (25%), Positives = 63/140 (45%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L F+ RN +++ PTRELA+Q+ + ++ V+GG + ++ L K
Sbjct: 107 LKFKPRN---GTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMK 163
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPK 1461
++L+ATPG L L + K + K + + D LE +D I P
Sbjct: 164 GVNMLIATPGRL-LDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIK---ILPN 219
Query: 1462 ANSRENALMSKALVSKRKEL 1481
+ R++ L S +K ++L
Sbjct: 220 ED-RQSMLFSATQTTKVEDL 238
Score = 79 (32.9 bits), Expect = 3.5e-19, Sum P(3) = 3.5e-19
Identities = 21/78 (26%), Positives = 44/78 (56%)
Query: 1237 PDNWLHRSGRTARANN-EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1295
P +++HR GRTAR +G +L+ + +E+ +++ + KV L ++ E+ ++ ++
Sbjct: 370 PRDYIHRVGRTARGTKGKGKSLMFLTPNELG-FLRYLKA--SKVPLNEYEFPENKIANVQ 426
Query: 1296 KRID-LAKSIEYLESKIK 1312
+++ L KS YL K
Sbjct: 427 SQLEKLIKSNYYLHQTAK 444
Score = 40 (19.1 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
++E G E++ I+ ++ E RQ+ +FSAT T
Sbjct: 201 ILEIGFEDEMRQII-KILPNED---RQSMLFSATQT 232
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 200 (75.5 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 55/190 (28%), Positives = 93/190 (48%)
Query: 1064 EKDSYLYYFILQHPG--RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
E + L +L+ P R++VF V L L + L M Q +R + +
Sbjct: 233 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
R + ++L+ATDVAARG+DIP + HV ++ +PR+ + Y+HR GRTARA +G + L+
Sbjct: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352
Query: 1182 ESD------------EIPLYIKMFNSLEKKVDLP-DFPIDESVLSLIKKRIDLAKSIEYL 1228
E+ E P+ ++ + L K P + + ++ KR + K+ E
Sbjct: 353 EAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKE 412
Query: 1229 ESKIKKNRPD 1238
+ ++KK D
Sbjct: 413 KPRVKKRHRD 422
Score = 195 (73.7 bits), Expect = 4.5e-33, Sum P(3) = 4.5e-33
Identities = 43/124 (34%), Positives = 69/124 (55%)
Query: 531 EKDSYLYYFILQHPG--RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
E + L +L+ P R++VF V L L + L M Q +R + +
Sbjct: 233 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 292
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
R + ++L+ATDVAARG+DIP + HV ++ +PR+ + Y+HR GRTARA +G + L+
Sbjct: 293 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352
Query: 649 ESDE 652
E+ +
Sbjct: 353 EAHD 356
Score = 192 (72.6 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 45/132 (34%), Positives = 76/132 (57%)
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
+F +K LIL PTRELA+QV +H + K+T + +A + GG++ + ++
Sbjct: 68 DFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQ 127
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
I+VAT GRL ++I+ +F + + L++DE DRM++ G ++++I ET
Sbjct: 128 DIVVATTGRLLQYIKEENF---DCRAVETLILDEADRMLDMGFAQDIEHIAG-----ETR 179
Query: 988 QPRQTFVFSATL 999
+QT +FSATL
Sbjct: 180 WRKQTLLFSATL 191
Score = 173 (66.0 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 41/129 (31%), Positives = 73/129 (56%)
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
+F +K LIL PTRELA+QV +H + K+T + +A + GG++ + ++
Sbjct: 68 DFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQ 127
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
I+VAT GRL ++I+ +F + + L++DE DRM++ G ++++I ET
Sbjct: 128 DIVVATTGRLLQYIKEENF---DCRAVETLILDEADRMLDMGFAQDIEHIAG-----ETR 179
Query: 371 QPRQTMIES 379
+QT++ S
Sbjct: 180 WRKQTLLFS 188
Score = 124 (48.7 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ + E+++ AL KGF PT IQ+ +P AL R D++G+A TG+GKT A+ +P L +
Sbjct: 8 ELELDESLLEALQDKGFTRPTAIQAAAIPPALDGR-DVLGSAPTGTGKTAAYLLPALQHL 66
Query: 215 VN 216
++
Sbjct: 67 LD 68
Score = 124 (48.7 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ + E+++ AL KGF PT IQ+ +P AL R D++G+A TG+GKT A+ +P L +
Sbjct: 8 ELELDESLLEALQDKGFTRPTAIQAAAIPPALDGR-DVLGSAPTGTGKTAAYLLPALQHL 66
Query: 832 VN 833
++
Sbjct: 67 LD 68
Score = 113 (44.8 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL PTRELA+QV +H + K+T + +A + GG++ + ++ I+VAT G L
Sbjct: 80 LILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137
Score = 78 (32.5 bits), Expect = 7.2e-23, Sum P(4) = 7.2e-23
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESD------------EIPLYIKMFNSLEKKVDLP-DF 1284
D +LHR GRTARA +G + L+E+ E P+ ++ + L K P +
Sbjct: 330 DTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEK 389
Query: 1285 PIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD 1317
+ ++ KR + K+ E + ++KK D
Sbjct: 390 QTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD 422
Score = 53 (23.7 bits), Expect = 3.0e-21, Sum P(3) = 3.0e-21
Identities = 30/116 (25%), Positives = 51/116 (43%)
Query: 297 MSTEKQLRILNKCPHILVAT-PGRLWEFIQLGHFHLTELYKINY-LVIDETDRMIESGHF 354
M R L K H+ +AT G + + H E++ N +V+ T R+++ +
Sbjct: 90 MQVSDHARELAKHTHLDIATITGGV---AYMNH---AEVFSENQDIVVATTGRLLQ--YI 141
Query: 355 PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
E +N R T M++ G ++++I ET +QT +FSATL
Sbjct: 142 KE-ENFDCRAVETLILDEADRMLDMGFAQDIEHIAG-----ETRWRKQTLLFSATL 191
Score = 41 (19.5 bits), Expect = 4.3e-19, Sum P(3) = 4.3e-19
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWLEKA 1444
LK+ + +SI ++ + + + NWL +A
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREA 271
Score = 40 (19.1 bits), Expect = 7.2e-23, Sum P(4) = 7.2e-23
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 1210 SVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSG 1245
++L + K+ + +SI ++ + + + NWL +G
Sbjct: 237 ALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG 272
Score = 38 (18.4 bits), Expect = 8.7e-19, Sum P(3) = 8.7e-19
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 1289 SVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEKA 1323
++L + K+ + +SI ++ + + + NWL +A
Sbjct: 237 ALLVHLLKQPEATRSIVFVRKRERVHELANWLREA 271
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 221 (82.9 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 53/171 (30%), Positives = 90/171 (52%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGRTLVFCNSISSVK 1091
+ P ++ L + + L S L + D K + L Y +++ + +VF + +
Sbjct: 292 LTEPVLIRLDVDSKLNEQLKTSFFLVREDTKTAVLLYLLQNVVRPQDQNVVFVATKHHAE 351
Query: 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151
LT+LLT S ++++++Q R NL +F S L+ TD+AARGLDIP +++VI+
Sbjct: 352 YLTELLTGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVIN 411
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
Y P ++++HR GR ARA G L+ DE+P + + L + V L
Sbjct: 412 YSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTL 462
Score = 215 (80.7 bits), Expect = 1.4e-33, Sum P(4) = 1.4e-33
Identities = 50/156 (32%), Positives = 84/156 (53%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGRTLVFCNSISSVK 558
+ P ++ L + + L S L + D K + L Y +++ + +VF + +
Sbjct: 292 LTEPVLIRLDVDSKLNEQLKTSFFLVREDTKTAVLLYLLQNVVRPQDQNVVFVATKHHAE 351
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
LT+LLT S ++++++Q R NL +F S L+ TD+AARGLDIP +++VI+
Sbjct: 352 YLTELLTGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVIN 411
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
Y P ++++HR GR ARA G L+ DE+P
Sbjct: 412 YSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVP 447
Score = 202 (76.2 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 48/121 (39%), Positives = 70/121 (57%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
ALIL+PTRELA+Q + GK+T +K A ++GG E Q L++ P I++ATPGRL
Sbjct: 168 ALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL- 226
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ + +L + Y+V DE DR+ E G +L+ I+ R+ QT +FSAT
Sbjct: 227 --VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP-----GGHQTVLFSAT 279
Query: 999 L 999
L
Sbjct: 280 L 280
Score = 198 (74.8 bits), Expect = 1.4e-33, Sum P(4) = 1.4e-33
Identities = 49/135 (36%), Positives = 74/135 (54%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
ALIL+PTRELA+Q + GK+T +K A ++GG E Q L++ P I++ATPGRL
Sbjct: 168 ALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL- 226
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ + +L + Y+V DE DR+ E G +L+ I+ R+ QT++ S
Sbjct: 227 --VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP-----GGHQTVLFSAT 279
Query: 382 FPELKNILDRVTMTE 396
P+L R +TE
Sbjct: 280 LPKLLVEFARAGLTE 294
Score = 146 (56.5 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 1346 ESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 1405
++R+ + ALIL+PTRELA+Q + GK+T +K A ++GG E Q L++ P
Sbjct: 158 KARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPD 217
Query: 1406 ILVATPGALSLKRIDL---AKSIEYL 1428
I++ATPG L +++ +S+EY+
Sbjct: 218 IIIATPGRLVHVAVEMNLKLQSVEYV 243
Score = 108 (43.1 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+ + + +KG+K PT IQ +P +L KD+V A TGSGKT F +P+
Sbjct: 106 VFKGIMKKGYKVPTPIQRKTIP-VILDGKDVVAMARTGSGKTACFLLPM 153
Score = 108 (43.1 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+ + + +KG+K PT IQ +P +L KD+V A TGSGKT F +P+
Sbjct: 106 VFKGIMKKGYKVPTPIQRKTIP-VILDGKDVVAMARTGSGKTACFLLPM 153
Score = 78 (32.5 bits), Expect = 9.9e-21, Sum P(3) = 9.9e-21
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN---WLHRSGRTARANNEG 1254
+K++L F ++ ++ I L++ I + P +LHR GR ARA G
Sbjct: 376 RKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSG 435
Query: 1255 LTLVLIESDEIPLYIKMFNSLEKKVDL 1281
L+ DE+P + + L + V L
Sbjct: 436 TAYSLVAPDEVPYLLDLHLFLGRSVTL 462
Score = 37 (18.1 bits), Expect = 1.4e-33, Sum P(4) = 1.4e-33
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 701 SQVEVSELSANTNDPDDQVNKTEEIQSD 728
++ + E++A++ DP Q+ + + Q D
Sbjct: 572 TRTTIFEINASSKDPSSQMMRAKR-QRD 598
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 229 (85.7 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 53/168 (31%), Positives = 98/168 (58%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHD---EKDSYLYYFILQ-HP 544
T+ +E++DL +++K+P + + + L + I + + ++++ + +++
Sbjct: 373 TMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFT 432
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
++F + R+ LL ++ LH +++Q QRL+ L RF+D+ IL+ATDVA
Sbjct: 433 DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 492
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
ARGLDI G++ VI++ +P T + Y+HR GRTARA G +V L+ +E
Sbjct: 493 ARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 540
Score = 213 (80.0 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
Identities = 48/123 (39%), Positives = 73/123 (59%)
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F + R+ LL ++ LH +++Q QRL+ L RF+D+ IL+ATDVAARG
Sbjct: 436 MLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARG 495
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
LDI G++ VI++ +P T + Y+HR GRTARA G ++ L+ +E KM + K
Sbjct: 496 LDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEER----KMLKEIVKAA 551
Query: 1201 DLP 1203
P
Sbjct: 552 KAP 554
Score = 185 (70.2 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
Identities = 46/122 (37%), Positives = 67/122 (54%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L PTREL IQV + ++ + VGG+ + Q L P IL+ATPGRL +
Sbjct: 262 LVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID 321
Query: 940 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ FHL+ I L++DE DRM++ ++K I+ R+ S RQT +FSAT
Sbjct: 322 HLHNCPSFHLSS---IEVLILDEADRMLDEYFEEQMKEII-RMC----SHHRQTMLFSAT 373
Query: 999 LT 1000
+T
Sbjct: 374 MT 375
Score = 170 (64.9 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 50/148 (33%), Positives = 74/148 (50%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L PTREL IQV + ++ + VGG+ + Q L P IL+ATPGRL +
Sbjct: 262 LVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID 321
Query: 323 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ FHL+ I L++DE DRM++ ++K I+ R+ S RQTM+ S
Sbjct: 322 HLHNCPSFHLSS---IEVLILDEADRMLDEYFEEQMKEII-RMC----SHHRQTMLFSAT 373
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSAT 409
+ L V++ P + FV S T
Sbjct: 374 MTDEVKDLASVSL---KNPVRIFVNSNT 398
Score = 128 (50.1 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIY 251
Query: 217 K 217
K
Sbjct: 252 K 252
Score = 128 (50.1 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIY 251
Query: 834 K 834
K
Sbjct: 252 K 252
Score = 117 (46.2 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 36/143 (25%), Positives = 66/143 (46%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
LI++ R + L+L PTREL IQV + ++ + VGG+ + Q L
Sbjct: 249 LIYKPRQAPVT-RVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 307
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIK-KNRPDNWLEKAAKDMXXXXXXENLIQPK 1461
P IL+ATPG L + + S ++ + D L++ ++ + +I+
Sbjct: 308 APDILIATPGRL-IDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQM-----KEIIRMC 361
Query: 1462 ANSRENALMSKALVSKRKELQSL 1484
++ R+ L S + + K+L S+
Sbjct: 362 SHHRQTMLFSATMTDEVKDLASV 384
Score = 64 (27.6 bits), Expect = 7.8e-20, Sum P(3) = 7.8e-20
Identities = 27/108 (25%), Positives = 49/108 (45%)
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR-IDLAKSIEYLESKIKK 1234
L L+ ++ E+ + LE D ID V + + R +D+ + ++ + +
Sbjct: 452 LGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMP 510
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1282
N +++HR GRTARA G ++ L+ +E KM + K P
Sbjct: 511 NTIKHYVHRVGRTARAGRAGRSVSLVGEEER----KMLKEIVKAAKAP 554
Score = 44 (20.5 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 398 SQPRQTFVFSATLT 411
S RQT +FSAT+T
Sbjct: 362 SHHRQTMLFSATMT 375
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 257 (95.5 bits), Expect = 1.5e-35, Sum P(3) = 1.5e-35
Identities = 64/201 (31%), Positives = 115/201 (57%)
Query: 1027 KRLQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQH-PGRTL 1081
K ++DL L++K+P+ V + EK + TL ++ I+C+ +K S LY F+ H +++
Sbjct: 258 KSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSI 317
Query: 1082 VFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
VF +S V+ L ++ L+ S L LH Q +R++ + F + ++L ATD+AAR
Sbjct: 318 VFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAAR 377
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLD P + V+ + P + YIHR+GRTAR +G L+++ E + ++ L+KK
Sbjct: 378 GLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQL---LQKK 434
Query: 1200 VDLPDFPIDESVLSLIKKRID 1220
V + + I+ L ++K+++
Sbjct: 435 VPVKEIKINPEKLIDVQKKLE 455
Score = 237 (88.5 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 57/170 (33%), Positives = 99/170 (58%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQH-PG 545
T + ++DL L++K+P+ V + EK + TL ++ I+C+ +K S LY F+ H
Sbjct: 255 TQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKK 314
Query: 546 RTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++VF +S V+ L ++ L+ S L LH Q +R++ + F + ++L ATD+
Sbjct: 315 KSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDI 374
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG-LTVVLIESDE 652
AARGLD P + V+ + P + YIHR+GRTAR +G ++L+ S++
Sbjct: 375 AARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEK 424
Score = 158 (60.7 bits), Expect = 1.5e-35, Sum P(3) = 1.5e-35
Identities = 42/125 (33%), Positives = 66/125 (52%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L LI++PTRELA Q + GK ++GG + + +N +ILV TPGR
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200
Query: 937 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L + + + FH T+L LV+DE DR+++ G + +++ + + RQT +F
Sbjct: 201 LLQHMDETVSFHATDL---QMLVLDEADRILDMGFADTMNAVIENLP-----KKRQTLLF 252
Query: 996 SATLT 1000
SAT T
Sbjct: 253 SATQT 257
Score = 143 (55.4 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 42/147 (28%), Positives = 73/147 (49%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L LI++PTRELA Q + GK ++GG + + +N +ILV TPGR
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200
Query: 320 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
L + + + FH T+L LV+DE DR+++ G + +++ + + RQT++
Sbjct: 201 LLQHMDETVSFHATDL---QMLVLDEADRILDMGFADTMNAVIENLP-----KKRQTLLF 252
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFV 405
S + K++ D ++ P +V
Sbjct: 253 SA--TQTKSVKDLARLS-LKNPEYVWV 276
Score = 112 (44.5 bits), Expect = 1.5e-35, Sum P(3) = 1.5e-35
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 759 NNEDMFV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
N E + V ++ + F + + ++ L + ++ T+IQ + AL KD++GAA+TGS
Sbjct: 59 NYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGS 117
Query: 818 GKTLAFGIPILTGI 831
GKTLAF +P+L +
Sbjct: 118 GKTLAFLVPVLEAL 131
Score = 112 (44.5 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 142 NNEDMFV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
N E + V ++ + F + + ++ L + ++ T+IQ + AL KD++GAA+TGS
Sbjct: 59 NYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGS 117
Query: 201 GKTLAFGIPILTGI 214
GKTLAF +P+L +
Sbjct: 118 GKTLAFLVPVLEAL 131
Score = 101 (40.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 38/129 (29%), Positives = 56/129 (43%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LI++PTRELA Q + GK ++GG + + +N +ILV TPG L L
Sbjct: 145 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRL-L 202
Query: 1417 KRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
+ +D S + + + + D L+ D ENL PK R+ L S
Sbjct: 203 QHMDETVSFHATDLQMLVLDEADRILDMGFAD-TMNAVIENL--PK--KRQTLLFSATQT 257
Query: 1476 SKRKELQSL 1484
K+L L
Sbjct: 258 KSVKDLARL 266
Score = 76 (31.8 bits), Expect = 1.2e-17, Sum P(4) = 1.2e-17
Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+ ++HR+GRTAR +G L+++ E + ++ L+KKV + + I+ L ++K+
Sbjct: 397 NTYIHRAGRTARYKEDGEALLILLPSEKAMVQQL---LQKKVPVKEIKINPEKLIDVQKK 453
Query: 1298 ID 1299
++
Sbjct: 454 LE 455
Score = 73 (30.8 bits), Expect = 1.2e-17, Sum P(4) = 1.2e-17
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 438 KRLQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQHPGR--- 490
K ++DL L++K+P+ V + EK + TL ++ I+C+ +K S LY F+ H +
Sbjct: 258 KSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSI 317
Query: 491 ---TLCEEIQDLLNI 502
+ C+E+Q L +
Sbjct: 318 VFFSSCKEVQYLYRV 332
Score = 44 (20.5 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 1455 ENLIQPKANSRENALMSKALVSKRKELQSLLGK 1487
+ L+Q K +E + + L+ +K+L+S+L +
Sbjct: 428 QQLLQKKVPVKEIKINPEKLIDVQKKLESILAQ 460
Score = 38 (18.4 bits), Expect = 6.0e-21, Sum P(4) = 6.0e-21
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 401 RQTFVFSATLT 411
RQT +FSAT T
Sbjct: 247 RQTLLFSATQT 257
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 222 (83.2 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 248 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 307
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 308 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 358
Score = 219 (82.2 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 51/129 (39%), Positives = 78/129 (60%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 248 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 307
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 308 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 359
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 360 PKEVRQLAE 368
Score = 188 (71.2 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 49/164 (29%), Positives = 81/164 (49%)
Query: 1059 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 396 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 455
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 456 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 515
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
G P +K L K ++ + I+ ++ L+ R
Sbjct: 516 GTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLVDHR 555
Score = 183 (69.5 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 42/121 (34%), Positives = 66/121 (54%)
Query: 526 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 396 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 455
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 456 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 515
Query: 642 G 642
G
Sbjct: 516 G 516
Score = 122 (48.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPG L
Sbjct: 248 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 305
Score = 116 (45.9 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 177 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 233
Score = 116 (45.9 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 177 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 233
Score = 65 (27.9 bits), Expect = 8.4e-23, Sum P(3) = 8.4e-23
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRTAR+ N+G P +K L K ++ + I+ ++ L+
Sbjct: 497 NSSEDYVHRIGRTARSTNKGTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLV 552
Query: 1295 KKR 1297
R
Sbjct: 553 DHR 555
Score = 48 (22.0 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 330 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 358
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 222 (83.2 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 248 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 307
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 308 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 358
Score = 219 (82.2 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 51/129 (39%), Positives = 78/129 (60%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 248 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 307
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 308 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 359
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 360 PKEVRQLAE 368
Score = 188 (71.2 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 49/164 (29%), Positives = 81/164 (49%)
Query: 1059 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 396 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 455
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 456 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 515
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
G P +K L K ++ + I+ ++ L+ R
Sbjct: 516 GTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLVDHR 555
Score = 183 (69.5 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 42/121 (34%), Positives = 66/121 (54%)
Query: 526 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 396 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 455
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 456 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 515
Query: 642 G 642
G
Sbjct: 516 G 516
Score = 122 (48.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPG L
Sbjct: 248 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 305
Score = 116 (45.9 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 177 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 233
Score = 116 (45.9 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 177 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 233
Score = 65 (27.9 bits), Expect = 8.5e-23, Sum P(3) = 8.5e-23
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRTAR+ N+G P +K L K ++ + I+ ++ L+
Sbjct: 497 NSSEDYVHRIGRTARSTNKGTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLV 552
Query: 1295 KKR 1297
R
Sbjct: 553 DHR 555
Score = 48 (22.0 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 330 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 358
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 222 (83.2 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 250 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 309
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 310 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 360
Score = 219 (82.2 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 51/129 (39%), Positives = 78/129 (60%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 250 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 309
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 310 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 361
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 362 PKEVRQLAE 370
Score = 188 (71.2 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 49/164 (29%), Positives = 81/164 (49%)
Query: 1059 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 398 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 457
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 458 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 517
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
G P +K L K ++ + I+ ++ L+ R
Sbjct: 518 GTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLVDHR 557
Score = 183 (69.5 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 42/121 (34%), Positives = 66/121 (54%)
Query: 526 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 398 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 457
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 458 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 517
Query: 642 G 642
G
Sbjct: 518 G 518
Score = 122 (48.0 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPG L
Sbjct: 250 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 307
Score = 116 (45.9 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 179 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 235
Score = 116 (45.9 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 179 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 235
Score = 65 (27.9 bits), Expect = 8.8e-23, Sum P(3) = 8.8e-23
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRTAR+ N+G P +K L K ++ + I+ ++ L+
Sbjct: 499 NSSEDYVHRIGRTARSTNKGTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLV 554
Query: 1295 KKR 1297
R
Sbjct: 555 DHR 557
Score = 48 (22.0 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 332 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 360
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 222 (83.2 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 250 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 309
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 310 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 360
Score = 219 (82.2 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 51/129 (39%), Positives = 78/129 (60%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 250 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 309
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 310 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 361
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 362 PKEVRQLAE 370
Score = 188 (71.2 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 49/164 (29%), Positives = 81/164 (49%)
Query: 1059 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 398 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 457
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 458 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 517
Query: 1175 GLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
G P +K L K ++ + I+ ++ L+ R
Sbjct: 518 GTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLVDHR 557
Score = 183 (69.5 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 42/121 (34%), Positives = 66/121 (54%)
Query: 526 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 398 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 457
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641
+R L+ FR IL+ATDVA+RGLD+ ++ VI+Y P +SE Y+HR GRTAR+ N+
Sbjct: 458 ERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK 517
Query: 642 G 642
G
Sbjct: 518 G 518
Score = 122 (48.0 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPG L
Sbjct: 250 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 307
Score = 116 (45.9 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 179 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 235
Score = 116 (45.9 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 179 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 235
Score = 65 (27.9 bits), Expect = 8.8e-23, Sum P(3) = 8.8e-23
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRTAR+ N+G P +K L K ++ + I+ ++ L+
Sbjct: 499 NSSEDYVHRIGRTARSTNKGTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLV 554
Query: 1295 KKR 1297
R
Sbjct: 555 DHR 557
Score = 48 (22.0 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 332 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 360
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 230 (86.0 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 54/168 (32%), Positives = 97/168 (57%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHD---EKDSYLYYFILQ-HP 544
T+ +E++DL +++K+P + + + L + I + + ++++ + + +
Sbjct: 404 TMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFT 463
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
++F + R+ LL ++ LH +++Q QRL+ L RF+D+ IL+ATDVA
Sbjct: 464 DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 523
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
ARGLDI G++ VI++ +P T + Y+HR GRTARA G +V L+ DE
Sbjct: 524 ARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 571
Score = 217 (81.4 bits), Expect = 4.5e-34, Sum P(3) = 4.5e-34
Identities = 49/123 (39%), Positives = 73/123 (59%)
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F + R+ LL ++ LH +++Q QRL+ L RF+D+ IL+ATDVAARG
Sbjct: 467 MLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARG 526
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
LDI G++ VI++ +P T + Y+HR GRTARA G ++ L+ DE KM + K
Sbjct: 527 LDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDER----KMLKEIVKAA 582
Query: 1201 DLP 1203
P
Sbjct: 583 KAP 585
Score = 187 (70.9 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
Identities = 61/222 (27%), Positives = 101/222 (45%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L PTREL IQV + ++ + VGG+ + Q L P IL+ATPGRL +
Sbjct: 293 LVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID 352
Query: 940 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ FHL+ I L++DE DRM++ ++K I+ R+ S RQT +FSAT
Sbjct: 353 HLHNCPSFHLSS---IEVLILDEADRMLDEYFEEQMKEII-RMC----SHHRQTMLFSAT 404
Query: 999 LTHXXXXXXXXXXXX-XXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIG--ITKTLTE 1055
+T D + Q+ + I+ + D + +T+T T+
Sbjct: 405 MTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTD 464
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQL 1096
+L +K ++ + +L G + ++S +RL L
Sbjct: 465 HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEAL 506
Score = 169 (64.5 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 50/148 (33%), Positives = 74/148 (50%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L PTREL IQV + ++ + VGG+ + Q L P IL+ATPGRL +
Sbjct: 293 LVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID 352
Query: 323 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ FHL+ I L++DE DRM++ ++K I+ R+ S RQTM+ S
Sbjct: 353 HLHNCPSFHLSS---IEVLILDEADRMLDEYFEEQMKEII-RMC----SHHRQTMLFSAT 404
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSAT 409
+ L V++ P + FV S T
Sbjct: 405 MTDEVKDLASVSL---KNPVRIFVNSNT 429
Score = 128 (50.1 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIY 282
Query: 217 K 217
K
Sbjct: 283 K 283
Score = 128 (50.1 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIY 282
Query: 834 K 834
K
Sbjct: 283 K 283
Score = 116 (45.9 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 36/143 (25%), Positives = 66/143 (46%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
LI++ R + L+L PTREL IQV + ++ + VGG+ + Q L
Sbjct: 280 LIYKPRQAPVT-RVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 338
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIK-KNRPDNWLEKAAKDMXXXXXXENLIQPK 1461
P IL+ATPG L + + S ++ + D L++ ++ + +I+
Sbjct: 339 APDILIATPGRL-IDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQM-----KEIIRMC 392
Query: 1462 ANSRENALMSKALVSKRKELQSL 1484
++ R+ L S + + K+L S+
Sbjct: 393 SHHRQTMLFSATMTDEVKDLASV 415
Score = 69 (29.3 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
Identities = 39/181 (21%), Positives = 80/181 (44%)
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR-IDLAKSIEYLESKIKK 1234
L L+ ++ E+ + LE D ID V + + R +D+ + ++ + +
Sbjct: 483 LGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMP 541
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N +++HR GRTARA G ++ L+ DE + ++ + + V P D V+
Sbjct: 542 NTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQD--VILKF 599
Query: 1295 KKRIDLAKSIEY----LESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPNQLLIFESRNL 1350
+ +I+ + Y LE++ K+ + AK + E ++Q + F+++
Sbjct: 600 RDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK-EAVVQEPERSWFQTKEE 658
Query: 1351 R 1351
R
Sbjct: 659 R 659
Score = 45 (20.9 bits), Expect = 2.9e-21, Sum P(3) = 2.9e-21
Identities = 19/91 (20%), Positives = 36/91 (39%)
Query: 398 SQPRQTFVFSATLTHXXXXXXXXXXXX-XXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTE 456
S RQT +FSAT+T D + Q+ + I+ + D
Sbjct: 393 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREA 452
Query: 457 KIG--ITKTLTESKILCKHDEKDSYLYYFIL 485
+ +T+T T+ +L +K ++ + +L
Sbjct: 453 IVAALLTRTFTDHVMLFTQTKKQAHRMHILL 483
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 327 (120.2 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 91/336 (27%), Positives = 166/336 (49%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYT-PVKVACV--VGGMSTEKQLRILNKCPHILVATP 934
YA++LAPTRELA Q+Q ++ K+ P+ CV VGG + E+Q +++ HI+VATP
Sbjct: 327 YAVVLAPTRELAQQIQ---VEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATP 383
Query: 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFV 994
GRL + ++ F L++ Y+V+DE DRM++ G ++ IL + + S+ + +
Sbjct: 384 GRLLDCLERRLFVLSQC---TYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSIL 440
Query: 995 FSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 1054
+A P + L I+ P ++ + IG
Sbjct: 441 ATAN---------SSSSRRQTIMFSATLPPRVANLAKSYLIE-PVMLTIGN-IGQAVDRV 489
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGR----TLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
E ++ D+ + + R ++F N +++ + + L + + LH S
Sbjct: 490 EQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGS 549
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
+Q QR + +++ R++ IL+ATD+A RG+DIP + V++Y++ ++ E Y HR GRT R
Sbjct: 550 KSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGR 609
Query: 1171 ANNEGLTLVLIESDEIPLY--IKMFNSLEKKVDLPD 1204
A G + + ++ +Y +++ S K +PD
Sbjct: 610 AGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPD 645
Score = 184 (69.8 bits), Expect = 6.4e-33, Sum P(3) = 6.4e-33
Identities = 33/105 (31%), Positives = 63/105 (60%)
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++F N +++ + + L + + LH S +Q QR + +++ R++ IL+ATD+A RG
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+DIP + V++Y++ ++ E Y HR GRT RA G + + ++
Sbjct: 580 IDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPED 624
Score = 174 (66.3 bits), Expect = 6.4e-33, Sum P(3) = 6.4e-33
Identities = 46/144 (31%), Positives = 81/144 (56%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYT-PVKVACV--VGGMSTEKQLRILNKCPHILVATP 317
YA++LAPTRELA Q+Q ++ K+ P+ CV VGG + E+Q +++ HI+VATP
Sbjct: 327 YAVVLAPTRELAQQIQ---VEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATP 383
Query: 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
GRL + ++ F L++ Y+V+DE DRM++ G ++ IL + + S+ +++
Sbjct: 384 GRLLDCLERRLFVLSQC---TYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSIL 440
Query: 378 ESGHFPELKNILDRVTMTETSQPR 401
+ + + + + T PR
Sbjct: 441 ATANSSSSRR--QTIMFSATLPPR 462
Score = 143 (55.4 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
+D+ + W + +P +++ L + +K P+ IQ +P LL RKD++G AETGSGKT
Sbjct: 242 DDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIP-VLLQRKDLIGIAETGSGKT 300
Query: 821 LAFGIPILTGIVNKL 835
AF IP++ I +KL
Sbjct: 301 AAFIIPLIIAI-SKL 314
Score = 143 (55.4 bits), Expect = 6.4e-33, Sum P(3) = 6.4e-33
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
+D+ + W + +P +++ L + +K P+ IQ +P LL RKD++G AETGSGKT
Sbjct: 242 DDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIP-VLLQRKDLIGIAETGSGKT 300
Query: 204 LAFGIPILTGIVNKL 218
AF IP++ I +KL
Sbjct: 301 AAFIIPLIIAI-SKL 314
Score = 109 (43.4 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYT-PVKVACV--VGGMSTEKQLRILNKCPHILVATPG 1412
A++LAPTRELA Q+Q ++ K+ P+ CV VGG + E+Q +++ HI+VATPG
Sbjct: 328 AVVLAPTRELAQQIQ---VEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPG 384
Query: 1413 AL 1414
L
Sbjct: 385 RL 386
Score = 75 (31.5 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
L + Y+V+DE DRM++ G ++ IL + + S+ + G +IL T
Sbjct: 397 LSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASE------KDG------SIL--AT 442
Query: 394 MTETSQPRQTFVFSATL 410
+S RQT +FSATL
Sbjct: 443 ANSSSSRRQTIMFSATL 459
Score = 68 (29.0 bits), Expect = 7.1e-21, Sum P(3) = 7.1e-21
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLY--IKMFNSLE 1276
ID+ L + K+ D + HR GRT RA G + + ++ +Y +++ S
Sbjct: 580 IDIPNVSLVLNYNMAKSIED-YTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRS 638
Query: 1277 KKVDLPD 1283
K +PD
Sbjct: 639 AKAHIPD 645
Score = 38 (18.4 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
P R WE L L L K+NY + I+ P L D + + ET
Sbjct: 247 PLRNWEEAGLPSEMLKVLKKVNY----KEPSSIQRAAIPVLLQRKDLIGIAET 295
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 225 (84.3 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 50/145 (34%), Positives = 75/145 (51%)
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 412 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 471
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ FRD +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 472 EAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 531
Query: 1181 IES--DEIPLYIKMFNSLEKKVDLP 1203
I DE L LE K +P
Sbjct: 532 INKACDESVLMDLKALLLEAKQKVP 556
Score = 223 (83.6 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
Identities = 50/162 (30%), Positives = 84/162 (51%)
Query: 491 TLCEEIQDLLNIKSPKIVDLTEKIG----ITKTLTESKILCKHDEKDSYLYYFILQHPGR 546
T+ ++IQ+ KS + +T +G + + + K + K YL + + P
Sbjct: 373 TMPKKIQNFA--KSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYLLECLQKTPPP 430
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
L+F + V + + L + + +H +Q +R K ++ FRD +L+ATDVA++
Sbjct: 431 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASK 490
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
GLD P I+HVI+Y +P E Y+HR GRT R+ N G+ I
Sbjct: 491 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 532
Score = 173 (66.0 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 45/128 (35%), Positives = 67/128 (52%)
Query: 878 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
Y LI+ P+RELA Q +L P++ A +GGMS ++Q+ + H++V
Sbjct: 255 YGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMV 314
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 315 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 366
Query: 992 TFVFSATL 999
T +FSAT+
Sbjct: 367 TLLFSATM 374
Score = 162 (62.1 bits), Expect = 1.2e-33, Sum P(4) = 1.2e-33
Identities = 43/130 (33%), Positives = 66/130 (50%)
Query: 261 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
Y LI+ P+RELA Q +L P++ A +GGMS ++Q+ + H++V
Sbjct: 255 YGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMV 314
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 315 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 366
Query: 375 TMIESGHFPE 384
T++ S P+
Sbjct: 367 TLLFSATMPK 376
Score = 123 (48.4 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ P I+R L +KG + PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 181 EMKFPAAILRGLKKKGIQQPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 236
Score = 123 (48.4 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ P I+R L +KG + PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 181 EMKFPAAILRGLKKKGIQQPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 236
Score = 102 (41.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 1337 IQPNQLLIFESRNLRYSWDALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGG 1390
++ + L F R Y LI+ P+RELA Q +L P++ A +GG
Sbjct: 240 LEQEKRLPFSKREGPYG---LIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGG 296
Query: 1391 MSTEKQLRILNKCPHILVATPGAL 1414
MS ++Q+ + H++VATPG L
Sbjct: 297 MSVKEQMETIKHGVHMMVATPGRL 320
Score = 64 (27.6 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIES--DEIPLYIKMFNSLEKKVDLP 1282
+N++HR GRT R+ N G+ I DE L LE K +P
Sbjct: 510 ENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 556
Score = 37 (18.1 bits), Expect = 1.2e-33, Sum P(4) = 1.2e-33
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 401 RQTFVFSATL 410
RQT +FSAT+
Sbjct: 365 RQTLLFSATM 374
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 259 (96.2 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 66/202 (32%), Positives = 116/202 (57%)
Query: 1027 KRLQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQH-PGRTL 1081
K ++DL L++K P+ V + EK + TL ++ I+C+ +K S L+ F+ H +++
Sbjct: 258 KSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLTKKSI 317
Query: 1082 VFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
VF +S V+ L ++ L+ S L LH Q +R++ + F + ++L ATD+AAR
Sbjct: 318 VFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAAR 377
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG-LTLVLIESDEIPLYIKMFNSLEK 1198
GLD P + V+ + P + YIHR+GRTAR +G L+L+ S+E + ++ L+K
Sbjct: 378 GLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQL---LQK 434
Query: 1199 KVDLPDFPIDESVLSLIKKRID 1220
KV + + I+ L ++KR++
Sbjct: 435 KVPVKEIKINPEKLIDVQKRLE 456
Score = 236 (88.1 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 57/170 (33%), Positives = 98/170 (57%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQH-PG 545
T + ++DL L++K P+ V + EK + TL ++ I+C+ +K S L+ F+ H
Sbjct: 255 TQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLTK 314
Query: 546 RTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++VF +S V+ L ++ L+ S L LH Q +R++ + F + ++L ATD+
Sbjct: 315 KSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDI 374
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG-LTVVLIESDE 652
AARGLD P + V+ + P + YIHR+GRTAR +G ++L+ S+E
Sbjct: 375 AARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEE 424
Score = 154 (59.3 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 43/125 (34%), Positives = 65/125 (52%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L LI++PTRELA Q + GK ++GG + + +N +ILV TPGR
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200
Query: 937 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L + + + FH T L LV+DE DR+++ G + I++ + + RQT +F
Sbjct: 201 LLQHMDETICFHATNL---QMLVLDEADRILDMGFADTMNAIIENLP-----KKRQTLLF 252
Query: 996 SATLT 1000
SAT T
Sbjct: 253 SATQT 257
Score = 139 (54.0 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 43/147 (29%), Positives = 72/147 (48%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L LI++PTRELA Q + GK ++GG + + +N +ILV TPGR
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200
Query: 320 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
L + + + FH T L LV+DE DR+++ G + I++ + + RQT++
Sbjct: 201 LLQHMDETICFHATNL---QMLVLDEADRILDMGFADTMNAIIENLP-----KKRQTLLF 252
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFV 405
S + K++ D ++ P +V
Sbjct: 253 SA--TQTKSVKDLARLS-LKDPEYVWV 276
Score = 114 (45.2 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 35/129 (27%), Positives = 60/129 (46%)
Query: 705 VSELSANTN-DPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDM 763
V L T DP N+ ++ S H + +E + N E +
Sbjct: 5 VGSLGQGTRPDPVRSFNRWKKKHSHRQHQKKERRKQLKKPEW-QVEREGISRLMQNYEKI 63
Query: 764 FV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822
V ++ + F + + ++ L + ++ T+IQ + AL KD++GAA+TGSGKTLA
Sbjct: 64 NVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLA 122
Query: 823 FGIPILTGI 831
F +P+L +
Sbjct: 123 FLVPVLEAL 131
Score = 112 (44.5 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 142 NNEDMFV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
N E + V ++ + F + + ++ L + ++ T+IQ + AL KD++GAA+TGS
Sbjct: 59 NYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGS 117
Query: 201 GKTLAFGIPILTGI 214
GKTLAF +P+L +
Sbjct: 118 GKTLAFLVPVLEAL 131
Score = 95 (38.5 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 38/131 (29%), Positives = 59/131 (45%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LI++PTRELA Q + GK ++GG + + +N +ILV TPG L L
Sbjct: 145 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRL-L 202
Query: 1417 KRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKA 1473
+ +D ++I + + ++ + D L+ D ENL PK R+ L S
Sbjct: 203 QHMD--ETICFHATNLQMLVLDEADRILDMGFAD-TMNAIIENL--PK--KRQTLLFSAT 255
Query: 1474 LVSKRKELQSL 1484
K+L L
Sbjct: 256 QTKSVKDLARL 266
Score = 83 (34.3 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 1238 DNWLHRSGRTARANNEG-LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
+ ++HR+GRTAR +G L+L+ S+E + ++ L+KKV + + I+ L ++K
Sbjct: 397 NTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQL---LQKKVPVKEIKINPEKLIDVQK 453
Query: 1297 RID 1299
R++
Sbjct: 454 RLE 456
Score = 68 (29.0 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 438 KRLQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQHPGR--- 490
K ++DL L++K P+ V + EK + TL ++ I+C+ +K S L+ F+ H +
Sbjct: 258 KSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLTKKSI 317
Query: 491 ---TLCEEIQDLLNI 502
+ C+E+Q L +
Sbjct: 318 VFFSSCKEVQYLYRV 332
Score = 41 (19.5 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 1455 ENLIQPKANSRENALMSKALVSKRKELQSLLGK 1487
+ L+Q K +E + + L+ +K L+S L +
Sbjct: 429 QQLLQKKVPVKEIKINPEKLIDVQKRLESFLAQ 461
Score = 38 (18.4 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 401 RQTFVFSATLT 411
RQT +FSAT T
Sbjct: 247 RQTLLFSATQT 257
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 257 (95.5 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 64/201 (31%), Positives = 115/201 (57%)
Query: 1027 KRLQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQH-PGRTL 1081
K ++DL L++K+P+ V + EK + TL ++ I+C+ +K S LY F+ H +++
Sbjct: 258 KSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSI 317
Query: 1082 VFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
VF +S V+ L ++ L+ S L LH Q +R++ + F + ++L ATD+AAR
Sbjct: 318 VFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAAR 377
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLD P + V+ + P + YIHR+GRTAR +G L+++ E + ++ L+KK
Sbjct: 378 GLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQL---LQKK 434
Query: 1200 VDLPDFPIDESVLSLIKKRID 1220
V + + I+ L ++K+++
Sbjct: 435 VPVKEIKINPEKLIDVQKKLE 455
Score = 237 (88.5 bits), Expect = 1.5e-31, Sum P(4) = 1.5e-31
Identities = 57/170 (33%), Positives = 99/170 (58%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQH-PG 545
T + ++DL L++K+P+ V + EK + TL ++ I+C+ +K S LY F+ H
Sbjct: 255 TQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKK 314
Query: 546 RTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++VF +S V+ L ++ L+ S L LH Q +R++ + F + ++L ATD+
Sbjct: 315 KSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDI 374
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG-LTVVLIESDE 652
AARGLD P + V+ + P + YIHR+GRTAR +G ++L+ S++
Sbjct: 375 AARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEK 424
Score = 158 (60.7 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 42/125 (33%), Positives = 66/125 (52%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L LI++PTRELA Q + GK ++GG + + +N +ILV TPGR
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200
Query: 937 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L + + + FH T+L LV+DE DR+++ G + +++ + + RQT +F
Sbjct: 201 LLQHMDETVSFHATDL---QMLVLDEADRILDMGFADTMNAVIENLP-----KKRQTLLF 252
Query: 996 SATLT 1000
SAT T
Sbjct: 253 SATQT 257
Score = 143 (55.4 bits), Expect = 1.5e-31, Sum P(4) = 1.5e-31
Identities = 42/147 (28%), Positives = 73/147 (49%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L LI++PTRELA Q + GK ++GG + + +N +ILV TPGR
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200
Query: 320 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
L + + + FH T+L LV+DE DR+++ G + +++ + + RQT++
Sbjct: 201 LLQHMDETVSFHATDL---QMLVLDEADRILDMGFADTMNAVIENLP-----KKRQTLLF 252
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFV 405
S + K++ D ++ P +V
Sbjct: 253 SA--TQTKSVKDLARLS-LKNPEYVWV 276
Score = 112 (44.5 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 142 NNEDMFV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
N E + V ++ + F + + ++ L + ++ T+IQ + AL KD++GAA+TGS
Sbjct: 59 NYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGS 117
Query: 201 GKTLAFGIPILTGI 214
GKTLAF +P+L +
Sbjct: 118 GKTLAFLVPVLEAL 131
Score = 112 (44.5 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 759 NNEDMFV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
N E + V ++ + F + + ++ L + ++ T+IQ + AL KD++GAA+TGS
Sbjct: 59 NYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGS 117
Query: 818 GKTLAFGIPILTGI 831
GKTLAF +P+L +
Sbjct: 118 GKTLAFLVPVLEAL 131
Score = 101 (40.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 38/129 (29%), Positives = 56/129 (43%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LI++PTRELA Q + GK ++GG + + +N +ILV TPG L L
Sbjct: 145 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRL-L 202
Query: 1417 KRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKALV 1475
+ +D S + + + + D L+ D ENL PK R+ L S
Sbjct: 203 QHMDETVSFHATDLQMLVLDEADRILDMGFAD-TMNAVIENL--PK--KRQTLLFSATQT 257
Query: 1476 SKRKELQSL 1484
K+L L
Sbjct: 258 KSVKDLARL 266
Score = 76 (31.8 bits), Expect = 1.5e-17, Sum P(4) = 1.5e-17
Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+ ++HR+GRTAR +G L+++ E + ++ L+KKV + + I+ L ++K+
Sbjct: 397 NTYIHRAGRTARYKEDGEALLILLPSEKAMVQQL---LQKKVPVKEIKINPEKLIDVQKK 453
Query: 1298 ID 1299
++
Sbjct: 454 LE 455
Score = 73 (30.8 bits), Expect = 1.5e-17, Sum P(4) = 1.5e-17
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 438 KRLQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQHPGR--- 490
K ++DL L++K+P+ V + EK + TL ++ I+C+ +K S LY F+ H +
Sbjct: 258 KSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSI 317
Query: 491 ---TLCEEIQDLLNI 502
+ C+E+Q L +
Sbjct: 318 VFFSSCKEVQYLYRV 332
Score = 44 (20.5 bits), Expect = 1.5e-31, Sum P(4) = 1.5e-31
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 1455 ENLIQPKANSRENALMSKALVSKRKELQSLLGK 1487
+ L+Q K +E + + L+ +K+L+S+L +
Sbjct: 428 QQLLQKKVPVKEIKINPEKLIDVQKKLESILAQ 460
Score = 38 (18.4 bits), Expect = 8.0e-21, Sum P(4) = 8.0e-21
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 401 RQTFVFSATLT 411
RQT +FSAT T
Sbjct: 247 RQTLLFSATQT 257
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 230 (86.0 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
Identities = 56/197 (28%), Positives = 103/197 (52%)
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTM 1099
VD ++ + L + ++C+ D++ L+ F+ ++ + +VF +S + VK +LL
Sbjct: 338 VDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVKYHAELLNY 397
Query: 1100 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
+ L LH Q++R F + +L+ TDVAARGLDIP ++ +I + P +
Sbjct: 398 IDLPVLDLHGKQKQQKRTNTFFEFCNAKQGVLICTDVAARGLDIPAVDWIIQFDPPDDTR 457
Query: 1160 IYIHRSGRTAR-ANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
YIHR GRTAR AN G +L+ ++ E+ ++K E +V + +F + ++ +
Sbjct: 458 DYIHRVGRTARGANGRGRSLMFLQPSEVG-FLKYLK--EARVPVVEFDFPAKKIVNVQSQ 514
Query: 1219 IDLAKSIEYLESKIKKN 1235
++ S Y +K K+
Sbjct: 515 LEKLISQNYYLNKSAKD 531
Score = 216 (81.1 bits), Expect = 2.8e-32, Sum P(3) = 2.8e-32
Identities = 47/148 (31%), Positives = 82/148 (55%)
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTM 566
VD ++ + L + ++C+ D++ L+ F+ ++ + +VF +S + VK +LL
Sbjct: 338 VDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVKYHAELLNY 397
Query: 567 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626
+ L LH Q++R F + +L+ TDVAARGLDIP ++ +I + P +
Sbjct: 398 IDLPVLDLHGKQKQQKRTNTFFEFCNAKQGVLICTDVAARGLDIPAVDWIIQFDPPDDTR 457
Query: 627 IYIHRSGRTAR-ANNEGLTVVLIESDEI 653
YIHR GRTAR AN G +++ ++ E+
Sbjct: 458 DYIHRVGRTARGANGRGRSLMFLQPSEV 485
Score = 161 (61.7 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
Identities = 48/132 (36%), Positives = 72/132 (54%)
Query: 872 KTRNKLYALILAPTRELAIQ---VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928
K RN ++++PTRELA+Q V +L A T V+GG + + L K +
Sbjct: 196 KPRNGTGVIVVSPTRELALQIFGVARELLTAHSQT---YGIVIGGANRRAEAEKLTKGVN 252
Query: 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 988
+L+ATPGRL + +Q + + K LVIDE DR++E G E++ I+ ++ E
Sbjct: 253 LLIATPGRLLDHLQNTPGFVFKNLKT--LVIDEADRILEVGFEDEMRQII-KILPNED-- 307
Query: 989 PRQTFVFSATLT 1000
RQT +FSAT T
Sbjct: 308 -RQTMLFSATQT 318
Score = 146 (56.5 bits), Expect = 7.8e-34, Sum P(3) = 7.8e-34
Identities = 45/128 (35%), Positives = 69/128 (53%)
Query: 255 KTRNKLYALILAPTRELAIQ---VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311
K RN ++++PTRELA+Q V +L A T V+GG + + L K +
Sbjct: 196 KPRNGTGVIVVSPTRELALQIFGVARELLTAHSQT---YGIVIGGANRRAEAEKLTKGVN 252
Query: 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 371
+L+ATPGRL + +Q + + K LVIDE DR++E G E++ I+ ++ E
Sbjct: 253 LLIATPGRLLDHLQNTPGFVFKNLKT--LVIDEADRILEVGFEDEMRQII-KILPNED-- 307
Query: 372 PRQTMIES 379
RQTM+ S
Sbjct: 308 -RQTMLFS 314
Score = 129 (50.5 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
Identities = 26/60 (43%), Positives = 42/60 (70%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + + E ++ + + GF+T T+IQ +P LLA +D++GAA+TGSGKTLAF IP +
Sbjct: 129 KFTELGLSEKTLQGIKEMGFETMTEIQQRTIPP-LLAGRDVLGAAKTGSGKTLAFLIPAI 187
Score = 129 (50.5 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
Identities = 26/60 (43%), Positives = 42/60 (70%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + + E ++ + + GF+T T+IQ +P LLA +D++GAA+TGSGKTLAF IP +
Sbjct: 129 KFTELGLSEKTLQGIKEMGFETMTEIQQRTIPP-LLAGRDVLGAAKTGSGKTLAFLIPAI 187
Score = 86 (35.3 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQ---VQNHILDAGKYTPVKVACVVGGMSTEKQLRI 1399
L F+ RN ++++PTRELA+Q V +L A T V+GG + +
Sbjct: 193 LRFKPRN---GTGVIVVSPTRELALQIFGVARELLTAHSQT---YGIVIGGANRRAEAEK 246
Query: 1400 LNKCPHILVATPGAL 1414
L K ++L+ATPG L
Sbjct: 247 LTKGVNLLIATPGRL 261
Score = 78 (32.5 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 25/97 (25%), Positives = 51/97 (52%)
Query: 1232 IKKNRPDN---WLHRSGRTAR-ANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1287
I+ + PD+ ++HR GRTAR AN G +L+ ++ E+ ++K E +V + +F
Sbjct: 448 IQFDPPDDTRDYIHRVGRTARGANGRGRSLMFLQPSEVG-FLKYLK--EARVPVVEFDFP 504
Query: 1288 ESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEKAA 1324
+ ++ +++ S Y +K K+ ++L+ A
Sbjct: 505 AKKIVNVQSQLEKLISQNYYLNKSAKDGYRSYLQAYA 541
Score = 45 (20.9 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399
L+I R+++ H + + T ++E G E++ I+ ++ E
Sbjct: 253 LLIATPGRLLD--HLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQII-KILPNED-- 307
Query: 400 PRQTFVFSATLT 411
RQT +FSAT T
Sbjct: 308 -RQTMLFSATQT 318
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 210 (79.0 bits), Expect = 2.6e-35, Sum P(3) = 2.6e-35
Identities = 42/110 (38%), Positives = 64/110 (58%)
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
G T++F + + +++ LT + +H + Q R K L FR +L+ATDVA
Sbjct: 271 GATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVA 330
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
ARG+DI + HVI+Y P ++Y+HR GRT RA G+ V L++ DE+P
Sbjct: 331 ARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELP 380
Score = 207 (77.9 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 41/110 (37%), Positives = 64/110 (58%)
Query: 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
G T++F + + +++ LT + +H + Q R K L FR +L+ATDVA
Sbjct: 271 GATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVA 330
Query: 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
ARG+DI + HVI+Y P ++Y+HR GRT RA G+ + L++ DE+P
Sbjct: 331 ARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELP 380
Score = 172 (65.6 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 47/135 (34%), Positives = 70/135 (51%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYT---P-----------VKVACVVGGMSTEKQLRILN 924
AL++ PTREL +QV + + AGKY P + V + GG E Q+ L
Sbjct: 87 ALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIEALR 146
Query: 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 984
++V TPGRL + Q GH L L + LV+DE D M++ G P+++ IL ++
Sbjct: 147 AGADVVVGTPGRLLDLCQQGHLQLGGL---SVLVLDEADEMLDLGFLPDIERILRQIPAD 203
Query: 985 ETSQPRQTFVFSATL 999
RQ+ +FSAT+
Sbjct: 204 -----RQSMLFSATM 213
Score = 170 (64.9 bits), Expect = 2.6e-35, Sum P(3) = 2.6e-35
Identities = 52/167 (31%), Positives = 78/167 (46%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYT---P-----------VKVACVVGGMSTEKQLRILN 307
AL++ PTREL +QV + + AGKY P + V + GG E Q+ L
Sbjct: 87 ALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIEALR 146
Query: 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 367
++V TPGRL + Q GH L L + LV+DE D M++ G P+++ IL ++
Sbjct: 147 AGADVVVGTPGRLLDLCQQGHLQLGGL---SVLVLDEADEMLDLGFLPDIERILRQIPAD 203
Query: 368 ETSQPRQTMIESGHFPE-----LKNILDRVTMTETSQPRQTFVFSAT 409
RQ+M+ S P+ + + R T P + V AT
Sbjct: 204 -----RQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDAT 245
Score = 137 (53.3 bits), Expect = 2.6e-35, Sum P(3) = 2.6e-35
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ K + + I+RAL ++G K P IQ + +P AL +D++G A TG GKT AFG+P+L
Sbjct: 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDG-EDVIGQARTGMGKTFAFGVPLLQ 70
Query: 213 GIVN 216
I +
Sbjct: 71 RITS 74
Score = 137 (53.3 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ K + + I+RAL ++G K P IQ + +P AL +D++G A TG GKT AFG+P+L
Sbjct: 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDG-EDVIGQARTGMGKTFAFGVPLLQ 70
Query: 830 GIVN 833
I +
Sbjct: 71 RITS 74
Score = 85 (35.0 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 25/73 (34%), Positives = 35/73 (47%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYT---P-----------VKVACVVGGMSTEKQLRILN 1401
AL++ PTREL +QV + + AGKY P + V + GG E Q+ L
Sbjct: 87 ALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIEALR 146
Query: 1402 KCPHILVATPGAL 1414
++V TPG L
Sbjct: 147 AGADVVVGTPGRL 159
Score = 72 (30.4 bits), Expect = 6.2e-21, Sum P(3) = 6.2e-21
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIP 1266
++HR GRT RA G+ + L++ DE+P
Sbjct: 354 YVHRIGRTGRAGRTGVAVTLVDWDELP 380
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 212 (79.7 bits), Expect = 2.7e-35, Sum P(4) = 2.7e-35
Identities = 75/235 (31%), Positives = 111/235 (47%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI-LCKHDEKD--SYLYYFI-LQHPGRTL 1081
I+RL K PK +++T +T+++ + L +D K + L I + +
Sbjct: 194 IQRLAKTFQ-KDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVIEATNVKNGI 252
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VFCN V + LT P+H + Q R + L RFRD +L+A+DVAARGL
Sbjct: 253 VFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAARGL 312
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTLVLIESDEI-PLYIKMFNSLEK 1198
DIP + HV ++ P E Y+HR GRT RA G T+V D+ +KM K
Sbjct: 313 DIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFVVKMI----K 368
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNE 1253
K D+P+F + E +L + ++ E + K D R GR+AR E
Sbjct: 369 K-DVPEF-MPEGLL----EELETLPPEEKRDRKTGGRGGDR--DRGGRSARGRTE 415
Score = 200 (75.5 bits), Expect = 9.9e-34, Sum P(4) = 9.9e-34
Identities = 59/170 (34%), Positives = 84/170 (49%)
Query: 491 TLCEEIQDLLNI--KSPKIVDLTEKIGITKTLTESKI-LCKHDEKD--SYLYYFI-LQHP 544
T +IQ L K PK +++T +T+++ + L +D K + L I +
Sbjct: 189 TFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVIEATNV 248
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+VFCN V + LT P+H + Q R + L RFRD +L+A+DVA
Sbjct: 249 KNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVA 308
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESDE 652
ARGLDIP + HV ++ P E Y+HR GRT RA G TVV D+
Sbjct: 309 ARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDK 358
Score = 192 (72.6 bits), Expect = 2.7e-35, Sum P(4) = 2.7e-35
Identities = 45/119 (37%), Positives = 69/119 (57%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LIL PTRELA QV + GKY + +A ++GG+S ++Q +L + +L+ATPGRL +
Sbjct: 79 LILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIATPGRLMD 138
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
G + + L+IDE DRM++ G P+++ I ++ RQT +FSAT
Sbjct: 139 QFDRGKLLMMG---VETLIIDEADRMLDMGFIPDIEKICAKLPAN-----RQTLLFSAT 189
Score = 190 (71.9 bits), Expect = 4.3e-35, Sum P(4) = 4.3e-35
Identities = 47/140 (33%), Positives = 76/140 (54%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LIL PTRELA QV + GKY + +A ++GG+S ++Q +L + +L+ATPGRL +
Sbjct: 79 LILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIATPGRLMD 138
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
G + + L+IDE DRM++ G P+++ I ++ RQT++ S F
Sbjct: 139 QFDRGKLLMMG---VETLIIDEADRMLDMGFIPDIEKICAKLPAN-----RQTLLFSATF 190
Query: 383 PELKNILDRVTMTETSQPRQ 402
P + R+ T P++
Sbjct: 191 P---TDIQRLAKTFQKDPKK 207
Score = 125 (49.1 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LIL PTRELA QV + GKY + +A ++GG+S ++Q +L + +L+ATPG L +
Sbjct: 79 LILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIATPGRL-M 137
Query: 1417 KRIDLAK 1423
+ D K
Sbjct: 138 DQFDRGK 144
Score = 117 (46.2 bits), Expect = 2.7e-35, Sum P(4) = 2.7e-35
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
F + E I++A+ + G+ PT IQ +P L+ D+ G A+TG+GKT AF +P++
Sbjct: 9 FGLAENILKAVTESGYTIPTPIQREAIPHILMGG-DVTGVAQTGTGKTAAFVLPMI 63
Score = 117 (46.2 bits), Expect = 2.7e-35, Sum P(4) = 2.7e-35
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
F + E I++A+ + G+ PT IQ +P L+ D+ G A+TG+GKT AF +P++
Sbjct: 9 FGLAENILKAVTESGYTIPTPIQREAIPHILMGG-DVTGVAQTGTGKTAAFVLPMI 63
Score = 56 (24.8 bits), Expect = 3.8e-19, Sum P(4) = 3.8e-19
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 1236 RPDNWLHRSGRTARANNEG--LTLVLIESDEI-PLYIKMFNSLEKKVDLPDFPIDESVL 1291
+ ++++HR GRT RA G T+V D+ +KM KK D+P+F + E +L
Sbjct: 328 KDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFVVKMI----KK-DVPEF-MPEGLL 380
Score = 45 (20.9 bits), Expect = 2.8e-20, Sum P(4) = 2.8e-20
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I ++ RQT +FSAT
Sbjct: 161 MLDMGFIPDIEKICAKLPAN-----RQTLLFSAT 189
Score = 39 (18.8 bits), Expect = 2.7e-35, Sum P(4) = 2.7e-35
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 1423 KSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENA 1468
+++E E + +P E+A + E QP+A RE +
Sbjct: 451 ETVEAAEPAAVQEKPKR--ERAPRGEKRRERTEETPQPRAEKRERS 494
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 237 (88.5 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 56/145 (38%), Positives = 83/145 (57%)
Query: 1078 GRTLVFCNSISSVKRLT-QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
G+ +VF + RL L KC L H ++Q QR + L FRD N SIL+ATDV
Sbjct: 362 GKCIVFTQTKRDADRLAFGLAKSYKCEAL--HGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
AARGLD+P ++ VIHY +P +E ++HR+GRT RA +G + +LI + +KM +
Sbjct: 420 AARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKG-SAILIHGQDQTRAVKM---I 475
Query: 1197 EKKV-----DLPDFPIDESVLSLIK 1216
EK+V +LP ++ S+ +
Sbjct: 476 EKEVGSRFNELPSIAVERGSASMFE 500
Score = 227 (85.0 bits), Expect = 4.4e-33, Sum P(3) = 4.4e-33
Identities = 47/109 (43%), Positives = 67/109 (61%)
Query: 545 GRTLVFCNSISSVKRLT-QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
G+ +VF + RL L KC L H ++Q QR + L FRD N SIL+ATDV
Sbjct: 362 GKCIVFTQTKRDADRLAFGLAKSYKCEAL--HGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
AARGLD+P ++ VIHY +P +E ++HR+GRT RA +G +++ D+
Sbjct: 420 AARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQ 468
Score = 164 (62.8 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 40/120 (33%), Positives = 70/120 (58%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QV+ ++ + C+ GG +Q+R LN + V TPGR+ +
Sbjct: 194 LVLAPTRELARQVEKEFRESAP--SLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIID 251
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
++ G +L+E + ++V+DE D+M++ G +++ IL ++ RQ+ +FSAT+
Sbjct: 252 LMKRGALNLSE---VQFVVLDEADQMLQVGFAEDVEIILQKLPAK-----RQSMMFSATM 303
Score = 154 (59.3 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 39/121 (32%), Positives = 68/121 (56%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QV+ ++ + C+ GG +Q+R LN + V TPGR+ +
Sbjct: 194 LVLAPTRELARQVEKEFRESAP--SLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIID 251
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ G +L+E + ++V+DE D+M++ G +++ IL ++ RQ+M+ S
Sbjct: 252 LMKRGALNLSE---VQFVVLDEADQMLQVGFAEDVEIILQKLPAK-----RQSMMFSATM 303
Query: 383 P 383
P
Sbjct: 304 P 304
Score = 117 (46.2 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
PE I++AL +G + IQ V+ A+ R D++G A TG+GKTLAFGIPI+ I+
Sbjct: 125 PE-IVKALKGRGIEKLFPIQKAVLEPAMEGR-DMIGRARTGTGKTLAFGIPIIDKII 179
Score = 117 (46.2 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
PE I++AL +G + IQ V+ A+ R D++G A TG+GKTLAFGIPI+ I+
Sbjct: 125 PE-IVKALKGRGIEKLFPIQKAVLEPAMEGR-DMIGRARTGTGKTLAFGIPIIDKII 179
Score = 95 (38.5 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L+LAPTRELA QV+ ++ + C+ GG +Q+R LN + V TPG +
Sbjct: 194 LVLAPTRELARQVEKEFRESAP--SLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRI-- 249
Query: 1417 KRIDLAK 1423
IDL K
Sbjct: 250 --IDLMK 254
Score = 72 (30.4 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV-----DLPDFPIDES 1289
N + ++HR+GRT RA +G + +LI + +KM +EK+V +LP ++
Sbjct: 439 NNTETFVHRTGRTGRAGKKG-SAILIHGQDQTRAVKM---IEKEVGSRFNELPSIAVERG 494
Query: 1290 VLSLIK 1295
S+ +
Sbjct: 495 SASMFE 500
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 225 (84.3 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 52/168 (30%), Positives = 97/168 (57%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHD---EKDSYLYYFILQ-HP 544
T+ +E++DL +++K+P + + + L + + + + ++++ + + +
Sbjct: 373 TMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTRTFT 432
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
++F + R+ LL ++ LH +++Q QRL+ L RF+D+ IL+ATDVA
Sbjct: 433 DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 492
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
ARGLDI G++ VI++ +P T + Y+HR GRTARA G +V L+ +E
Sbjct: 493 ARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 540
Score = 213 (80.0 bits), Expect = 6.4e-34, Sum P(3) = 6.4e-34
Identities = 48/123 (39%), Positives = 73/123 (59%)
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F + R+ LL ++ LH +++Q QRL+ L RF+D+ IL+ATDVAARG
Sbjct: 436 MLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARG 495
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
LDI G++ VI++ +P T + Y+HR GRTARA G ++ L+ +E KM + K
Sbjct: 496 LDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEER----KMLKEIVKAA 551
Query: 1201 DLP 1203
P
Sbjct: 552 KAP 554
Score = 186 (70.5 bits), Expect = 2.6e-19, Sum P(4) = 2.6e-19
Identities = 61/222 (27%), Positives = 101/222 (45%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L PTREL IQV + ++ + VGG+ + Q L P IL+ATPGRL +
Sbjct: 262 LVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID 321
Query: 940 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ FHL+ I L++DE DRM++ ++K I+ R+ S RQT +FSAT
Sbjct: 322 HLHNCPSFHLSS---IEVLILDEADRMLDEYFEEQMKEII-RMC----SHHRQTMLFSAT 373
Query: 999 LTHXXXXXXXXXXXX-XXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIG--ITKTLTE 1055
+T D + Q+ + I+ + D + +T+T T+
Sbjct: 374 MTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTRTFTD 433
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQL 1096
+L +K ++ + +L G + ++S +RL L
Sbjct: 434 HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEAL 475
Score = 169 (64.5 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 50/148 (33%), Positives = 74/148 (50%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L PTREL IQV + ++ + VGG+ + Q L P IL+ATPGRL +
Sbjct: 262 LVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID 321
Query: 323 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ FHL+ I L++DE DRM++ ++K I+ R+ S RQTM+ S
Sbjct: 322 HLHNCPSFHLSS---IEVLILDEADRMLDEYFEEQMKEII-RMC----SHHRQTMLFSAT 373
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSAT 409
+ L V++ P + FV S T
Sbjct: 374 MTDEVKDLASVSL---KNPVRIFVNSNT 398
Score = 130 (50.8 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 43/145 (29%), Positives = 64/145 (44%)
Query: 84 SQVEVSELSANTNDPDDQVNKTEEIQSDEPS----SXXXXXXXXXXXTYTSANKELLEVD 139
S+ + ++ + + +D K EE DE S S T T KE +
Sbjct: 109 SEEKEAKEGSELEEQEDHEGKDEEGPEDEDSETDYSSADENILTKAATDTLKVKERKKKK 168
Query: 140 TSNNEDMFVQMA----EWVKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
F + A E + F N+ +++A+ GFK PT IQ +P LL KDI
Sbjct: 169 KGQETGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDI 227
Query: 193 VGAAETGSGKTLAFGIPILTGIVNK 217
A TG+GKT AF +P+L ++ K
Sbjct: 228 CACAATGTGKTAAFALPVLERLIYK 252
Score = 128 (50.1 bits), Expect = 2.6e-19, Sum P(4) = 2.6e-19
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIY 251
Query: 834 K 834
K
Sbjct: 252 K 252
Score = 115 (45.5 bits), Expect = 8.7e-10, Sum P(3) = 8.7e-10
Identities = 36/143 (25%), Positives = 66/143 (46%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
LI++ R + L+L PTREL IQV + ++ + VGG+ + Q L
Sbjct: 249 LIYKPRQSPVT-RVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRA 307
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIK-KNRPDNWLEKAAKDMXXXXXXENLIQPK 1461
P IL+ATPG L + + S ++ + D L++ ++ + +I+
Sbjct: 308 APDILIATPGRL-IDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQM-----KEIIRMC 361
Query: 1462 ANSRENALMSKALVSKRKELQSL 1484
++ R+ L S + + K+L S+
Sbjct: 362 SHHRQTMLFSATMTDEVKDLASV 384
Score = 64 (27.6 bits), Expect = 2.6e-19, Sum P(4) = 2.6e-19
Identities = 27/108 (25%), Positives = 49/108 (45%)
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR-IDLAKSIEYLESKIKK 1234
L L+ ++ E+ + LE D ID V + + R +D+ + ++ + +
Sbjct: 452 LGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMP 510
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1282
N +++HR GRTARA G ++ L+ +E KM + K P
Sbjct: 511 NTIKHYVHRVGRTARAGRAGRSVSLVGEEER----KMLKEIVKAAKAP 554
Score = 44 (20.5 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 398 SQPRQTFVFSATLT 411
S RQT +FSAT+T
Sbjct: 362 SHHRQTMLFSATMT 375
Score = 38 (18.4 bits), Expect = 2.6e-19, Sum P(4) = 2.6e-19
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 454 LTEKIGITKTLTESKILCKHDEKDS 478
+ E++G+ T+ E + H E DS
Sbjct: 1 MLEELGLIGTIGEDDDVPGHPESDS 25
Score = 38 (18.4 bits), Expect = 2.6e-19, Sum P(4) = 2.6e-19
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 510 LTEKIGITKTLTESKILCKHDEKDS 534
+ E++G+ T+ E + H E DS
Sbjct: 1 MLEELGLIGTIGEDDDVPGHPESDS 25
Score = 38 (18.4 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1043 LTEKIGITKTLTESKILCKHDEKDS 1067
+ E++G+ T+ E + H E DS
Sbjct: 1 MLEELGLIGTIGEDDDVPGHPESDS 25
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 256 (95.2 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 65/202 (32%), Positives = 116/202 (57%)
Query: 1027 KRLQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQH-PGRTL 1081
K ++DL L++K P+ V + EK + TL ++ I+C+ +K S L+ F+ H +++
Sbjct: 258 KSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLKKKSI 317
Query: 1082 VFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
VF +S V+ L ++ L+ S L LH Q +R++ + F + ++L ATD+AAR
Sbjct: 318 VFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAAR 377
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG-LTLVLIESDEIPLYIKMFNSLEK 1198
GLD P + V+ + P + YIHR+GRTAR +G L+L+ S+E + ++ L+K
Sbjct: 378 GLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQL---LQK 434
Query: 1199 KVDLPDFPIDESVLSLIKKRID 1220
KV + + I+ L ++K+++
Sbjct: 435 KVPVKEIKINPEKLIDVQKKLE 456
Score = 236 (88.1 bits), Expect = 8.2e-31, Sum P(4) = 8.2e-31
Identities = 57/170 (33%), Positives = 98/170 (57%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQH-PG 545
T + ++DL L++K P+ V + EK + TL ++ I+C+ +K S L+ F+ H
Sbjct: 255 TQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLKK 314
Query: 546 RTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+++VF +S V+ L ++ L+ S L LH Q +R++ + F + ++L ATD+
Sbjct: 315 KSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDI 374
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG-LTVVLIESDE 652
AARGLD P + V+ + P + YIHR+GRTAR +G ++L+ S+E
Sbjct: 375 AARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEE 424
Score = 154 (59.3 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 43/125 (34%), Positives = 65/125 (52%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L LI++PTRELA Q + GK ++GG + + +N +ILV TPGR
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200
Query: 937 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L + + + FH T L LV+DE DR+++ G + I++ + + RQT +F
Sbjct: 201 LLQHMDETICFHATNL---QMLVLDEADRILDMGFADTMNAIIENLP-----KKRQTLLF 252
Query: 996 SATLT 1000
SAT T
Sbjct: 253 SATQT 257
Score = 139 (54.0 bits), Expect = 8.2e-31, Sum P(4) = 8.2e-31
Identities = 43/147 (29%), Positives = 72/147 (48%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L LI++PTRELA Q + GK ++GG + + +N +ILV TPGR
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200
Query: 320 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
L + + + FH T L LV+DE DR+++ G + I++ + + RQT++
Sbjct: 201 LLQHMDETICFHATNL---QMLVLDEADRILDMGFADTMNAIIENLP-----KKRQTLLF 252
Query: 379 SGHFPELKNILDRVTMTETSQPRQTFV 405
S + K++ D ++ P +V
Sbjct: 253 SA--TQTKSVKDLARLS-LKDPEYVWV 276
Score = 115 (45.5 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 35/129 (27%), Positives = 61/129 (47%)
Query: 705 VSELSANTN-DPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDM 763
V+ L T DP N+ ++ S H + +E + N E +
Sbjct: 5 VASLGQGTRPDPVRSFNRWKKKHSHRQHQKKERRKQLKKPEW-QVEREGISRLMQNYEKI 63
Query: 764 FV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822
V ++ + F + + ++ L + ++ T+IQ + AL KD++GAA+TGSGKTLA
Sbjct: 64 NVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLA 122
Query: 823 FGIPILTGI 831
F +P+L +
Sbjct: 123 FLVPVLEAL 131
Score = 112 (44.5 bits), Expect = 8.2e-31, Sum P(4) = 8.2e-31
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 142 NNEDMFV-QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
N E + V ++ + F + + ++ L + ++ T+IQ + AL KD++GAA+TGS
Sbjct: 59 NYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGS 117
Query: 201 GKTLAFGIPILTGI 214
GKTLAF +P+L +
Sbjct: 118 GKTLAFLVPVLEAL 131
Score = 95 (38.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 38/131 (29%), Positives = 59/131 (45%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LI++PTRELA Q + GK ++GG + + +N +ILV TPG L L
Sbjct: 145 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGRL-L 202
Query: 1417 KRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKA 1473
+ +D ++I + + ++ + D L+ D ENL PK R+ L S
Sbjct: 203 QHMD--ETICFHATNLQMLVLDEADRILDMGFAD-TMNAIIENL--PK--KRQTLLFSAT 255
Query: 1474 LVSKRKELQSL 1484
K+L L
Sbjct: 256 QTKSVKDLARL 266
Score = 80 (33.2 bits), Expect = 5.1e-17, Sum P(4) = 5.1e-17
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 1238 DNWLHRSGRTARANNEG-LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
+ ++HR+GRTAR +G L+L+ S+E + ++ L+KKV + + I+ L ++K
Sbjct: 397 NTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQL---LQKKVPVKEIKINPEKLIDVQK 453
Query: 1297 RID 1299
+++
Sbjct: 454 KLE 456
Score = 68 (29.0 bits), Expect = 5.1e-17, Sum P(4) = 5.1e-17
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 438 KRLQDL--LNIKSPKIVDLTEKIGITK--TLTESKILCKHDEKDSYLYYFILQHPGR--- 490
K ++DL L++K P+ V + EK + TL ++ I+C+ +K S L+ F+ H +
Sbjct: 258 KSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLKKKSI 317
Query: 491 ---TLCEEIQDLLNI 502
+ C+E+Q L +
Sbjct: 318 VFFSSCKEVQYLYRV 332
Score = 42 (19.8 bits), Expect = 8.2e-31, Sum P(4) = 8.2e-31
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 1455 ENLIQPKANSRENALMSKALVSKRKELQSLLGK 1487
+ L+Q K +E + + L+ +K+L+S L +
Sbjct: 429 QQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQ 461
Score = 38 (18.4 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 401 RQTFVFSATLT 411
RQT +FSAT T
Sbjct: 247 RQTLLFSATQT 257
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 206 (77.6 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 57/172 (33%), Positives = 83/172 (48%)
Query: 1042 DLTEKIGITKTLTESKILCKHDEKDSYLY----YFILQHPGRT-LVFCNSISSVKRLTQL 1096
+LT I +T+ + L + D +Y + P T +VFCN
Sbjct: 321 ELTGSINVTQHIVNIDDLSDL-QSDDLIYDEINKILTADPTNTVIVFCNEKYKCDDFQHY 379
Query: 1097 LTMLK-CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 1155
L+ K + LH+ +QR R L FRD IL+ATDVAARGLDIP ++ V +Y +P
Sbjct: 380 LSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSVKAVFNYRLP 439
Query: 1156 RTSEIYIHRSGRTARANNEG--LTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
E Y+HR GRT RA G + V ++ + +K+ +K+ PDF
Sbjct: 440 GNIEDYVHRIGRTGRAGKTGDAWSYVTTQTPNLRDLVKILQRTNQKI--PDF 489
Score = 196 (74.1 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 43/119 (36%), Positives = 71/119 (59%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L++APTRELA Q++ + + T ++ C GG+ Q RIL I++ TPGRL +
Sbjct: 188 LVMAPTRELAQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLND 247
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
++ H L + YLV+DE DRM++ G P++++++D++ + RQT +FSAT
Sbjct: 248 LLRKHH-----LSSVQYLVLDEADRMLDMGFMPQIESLIDQIP-----KERQTLMFSAT 296
Score = 196 (74.1 bits), Expect = 2.9e-33, Sum P(3) = 2.9e-33
Identities = 51/140 (36%), Positives = 69/140 (49%)
Query: 509 DLTEKIGITKTLTESKILCKHDEKDSYLY----YFILQHPGRT-LVFCNSISSVKRLTQL 563
+LT I +T+ + L + D +Y + P T +VFCN
Sbjct: 321 ELTGSINVTQHIVNIDDLSDL-QSDDLIYDEINKILTADPTNTVIVFCNEKYKCDDFQHY 379
Query: 564 LTMLK-CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 622
L+ K + LH+ +QR R L FRD IL+ATDVAARGLDIP ++ V +Y +P
Sbjct: 380 LSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSVKAVFNYRLP 439
Query: 623 RTSEIYIHRSGRTARANNEG 642
E Y+HR GRT RA G
Sbjct: 440 GNIEDYVHRIGRTGRAGKTG 459
Score = 188 (71.2 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 43/125 (34%), Positives = 74/125 (59%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L++APTRELA Q++ + + T ++ C GG+ Q RIL I++ TPGRL +
Sbjct: 188 LVMAPTRELAQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLND 247
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ H L + YLV+DE DRM++ G P++++++D++ + RQT++ S +
Sbjct: 248 LLRKHH-----LSSVQYLVLDEADRMLDMGFMPQIESLIDQIP-----KERQTLMFSATW 297
Query: 383 P-ELK 386
P E+K
Sbjct: 298 PKEVK 302
Score = 117 (46.2 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 41/167 (24%), Positives = 71/167 (42%)
Query: 66 INVTVSSXXXXXXXXQNPSQVEVSELSANTNDPDDQV---NKTEEIQSDEPSSXXXXXXX 122
+ V SS ++ S E S + + +K+EE +S++ SS
Sbjct: 17 VKVEQSSSKKLKMSKRDESSDESSSSDSEVESKSKSIKKSSKSEEKKSEKKSSSSKEDKE 76
Query: 123 XXXXTYTSANKELLEVDTSNNEDMFVQ-------MAEWVKFNIPETIIRALYQKGFKTPT 175
T + L + ++ ++ ++ + P + + ++Q GF PT
Sbjct: 77 EEVKEETKEDIVLSPTEWRKKHNVLIEGKSQPNPFQKFTDYEFPR-MFQHIFQ-GFTAPT 134
Query: 176 KIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 222
IQ P +L D+VG A TGSGKTLAF +P L I++ + P+
Sbjct: 135 VIQGQSWP-IILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKRPS 180
Score = 113 (44.8 bits), Expect = 3.3e-34, Sum P(4) = 3.3e-34
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + P + + ++Q GF PT IQ P +L D+VG A TGSGKTLAF +P L
Sbjct: 113 KFTDYEFPR-MFQHIFQ-GFTAPTVIQGQSWP-IILGGNDLVGLAATGSGKTLAFLLPAL 169
Query: 829 TGIVNKLENPT 839
I++ + P+
Sbjct: 170 LKIISLPKRPS 180
Score = 112 (44.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS- 1415
L++APTRELA Q++ + + T ++ C GG+ Q RIL I++ TPG L+
Sbjct: 188 LVMAPTRELAQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLND 247
Query: 1416 LKRIDLAKSIEYL 1428
L R S++YL
Sbjct: 248 LLRKHHLSSVQYL 260
Score = 57 (25.1 bits), Expect = 7.8e-21, Sum P(3) = 7.8e-21
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P++++++D++ + RQT +FSAT
Sbjct: 268 MLDMGFMPQIESLIDQIP-----KERQTLMFSAT 296
Score = 57 (25.1 bits), Expect = 6.6e-19, Sum P(4) = 6.6e-19
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 1238 DNWLHRSGRTARANNEG--LTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1284
++++HR GRT RA G + V ++ + +K+ +K+ PDF
Sbjct: 443 EDYVHRIGRTGRAGKTGDAWSYVTTQTPNLRDLVKILQRTNQKI--PDF 489
Score = 38 (18.4 bits), Expect = 3.3e-34, Sum P(4) = 3.3e-34
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 707 ELSANTNDPDDQV-NKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFV 765
E S ++ D +V +K++ I+ S + + +KE EV ED+ +
Sbjct: 34 ESSDESSSSDSEVESKSKSIKKS---SKSEEKKSEKKSSSSKEDKEE-EVKEETKEDIVL 89
Query: 766 QMAEWVK 772
EW K
Sbjct: 90 SPTEWRK 96
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 225 (84.3 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 52/168 (30%), Positives = 97/168 (57%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHD---EKDSYLYYFILQ-HP 544
T+ +E++DL +++K+P + + + L + + + + ++++ + + +
Sbjct: 394 TMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTRTFT 453
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
++F + R+ LL ++ LH +++Q QRL+ L RF+D+ IL+ATDVA
Sbjct: 454 DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 513
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
ARGLDI G++ VI++ +P T + Y+HR GRTARA G +V L+ +E
Sbjct: 514 ARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 561
Score = 213 (80.0 bits), Expect = 7.2e-34, Sum P(3) = 7.2e-34
Identities = 48/123 (39%), Positives = 73/123 (59%)
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F + R+ LL ++ LH +++Q QRL+ L RF+D+ IL+ATDVAARG
Sbjct: 457 MLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARG 516
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
LDI G++ VI++ +P T + Y+HR GRTARA G ++ L+ +E KM + K
Sbjct: 517 LDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEER----KMLKEIVKAA 572
Query: 1201 DLP 1203
P
Sbjct: 573 KAP 575
Score = 186 (70.5 bits), Expect = 3.0e-19, Sum P(4) = 3.0e-19
Identities = 61/222 (27%), Positives = 101/222 (45%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L PTREL IQV + ++ + VGG+ + Q L P IL+ATPGRL +
Sbjct: 283 LVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID 342
Query: 940 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ FHL+ I L++DE DRM++ ++K I+ R+ S RQT +FSAT
Sbjct: 343 HLHNCPSFHLSS---IEVLILDEADRMLDEYFEEQMKEII-RMC----SHHRQTMLFSAT 394
Query: 999 LTHXXXXXXXXXXXX-XXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIG--ITKTLTE 1055
+T D + Q+ + I+ + D + +T+T T+
Sbjct: 395 MTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTRTFTD 454
Query: 1056 SKILCKHDEKDSYLYYFILQHPGRTL-VFCNSISSVKRLTQL 1096
+L +K ++ + +L G + ++S +RL L
Sbjct: 455 HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEAL 496
Score = 169 (64.5 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 50/148 (33%), Positives = 74/148 (50%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L PTREL IQV + ++ + VGG+ + Q L P IL+ATPGRL +
Sbjct: 283 LVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID 342
Query: 323 FIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ FHL+ I L++DE DRM++ ++K I+ R+ S RQTM+ S
Sbjct: 343 HLHNCPSFHLSS---IEVLILDEADRMLDEYFEEQMKEII-RMC----SHHRQTMLFSAT 394
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSAT 409
+ L V++ P + FV S T
Sbjct: 395 MTDEVKDLASVSL---KNPVRIFVNSNT 419
Score = 130 (50.8 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 42/143 (29%), Positives = 63/143 (44%)
Query: 84 SQVEVSELSANTNDPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTY--TSANKELLEVDTS 141
S+ + ++ + + +D K EE DE S T T KE +
Sbjct: 132 SEEKEAKEGSELEEQEDHEGKDEEGPEDEDSETDYSSADENILTKADTLKVKERKKKKKG 191
Query: 142 NNEDMFVQMA----EWVKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVG 194
F + A E + F N+ +++A+ GFK PT IQ +P LL KDI
Sbjct: 192 QETGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICA 250
Query: 195 AAETGSGKTLAFGIPILTGIVNK 217
A TG+GKT AF +P+L ++ K
Sbjct: 251 CAATGTGKTAAFALPVLERLIYK 273
Score = 128 (50.1 bits), Expect = 3.0e-19, Sum P(4) = 3.0e-19
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 214 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIY 272
Query: 834 K 834
K
Sbjct: 273 K 273
Score = 115 (45.5 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 36/143 (25%), Positives = 66/143 (46%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
LI++ R + L+L PTREL IQV + ++ + VGG+ + Q L
Sbjct: 270 LIYKPRQSPVT-RVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRA 328
Query: 1403 CPHILVATPGALSLKRIDLAKSIEYLESKIK-KNRPDNWLEKAAKDMXXXXXXENLIQPK 1461
P IL+ATPG L + + S ++ + D L++ ++ + +I+
Sbjct: 329 APDILIATPGRL-IDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQM-----KEIIRMC 382
Query: 1462 ANSRENALMSKALVSKRKELQSL 1484
++ R+ L S + + K+L S+
Sbjct: 383 SHHRQTMLFSATMTDEVKDLASV 405
Score = 64 (27.6 bits), Expect = 3.0e-19, Sum P(4) = 3.0e-19
Identities = 27/108 (25%), Positives = 49/108 (45%)
Query: 1176 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR-IDLAKSIEYLESKIKK 1234
L L+ ++ E+ + LE D ID V + + R +D+ + ++ + +
Sbjct: 473 LGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI-EGVKTVINFTMP 531
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1282
N +++HR GRTARA G ++ L+ +E KM + K P
Sbjct: 532 NTIKHYVHRVGRTARAGRAGRSVSLVGEEER----KMLKEIVKAAKAP 575
Score = 44 (20.5 bits), Expect = 3.0e-22, Sum P(3) = 3.0e-22
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 398 SQPRQTFVFSATLT 411
S RQT +FSAT+T
Sbjct: 383 SHHRQTMLFSATMT 396
Score = 38 (18.4 bits), Expect = 3.0e-19, Sum P(4) = 3.0e-19
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 454 LTEKIGITKTLTESKILCKHDEKDS 478
+ E++G+ T+ E + H E DS
Sbjct: 24 MLEELGLIGTIGEDDDVPGHPESDS 48
Score = 38 (18.4 bits), Expect = 3.0e-19, Sum P(4) = 3.0e-19
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 510 LTEKIGITKTLTESKILCKHDEKDS 534
+ E++G+ T+ E + H E DS
Sbjct: 24 MLEELGLIGTIGEDDDVPGHPESDS 48
Score = 38 (18.4 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1043 LTEKIGITKTLTESKILCKHDEKDS 1067
+ E++G+ T+ E + H E DS
Sbjct: 24 MLEELGLIGTIGEDDDVPGHPESDS 48
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 343 (125.8 bits), Expect = 3.7e-35, Sum P(2) = 3.7e-35
Identities = 98/333 (29%), Positives = 160/333 (48%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
++A+IL PTRELA+Q+ I +K + GG Q L PH++VATPGR
Sbjct: 164 IFAVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAGRPHVVVATPGR 223
Query: 937 LWEFIQL-GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L + I G + L ++ +V+DE DR++ G L ++ ++ RQT +F
Sbjct: 224 LADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFLPGPSQRQTLLF 283
Query: 996 SATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTE-----KIGIT 1050
+ATLT P ++ L+ + + +TE K +
Sbjct: 284 TATLT-----------------------PEVRALKSMPQTPGKPPIFVTEISTEAKDTVP 320
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPGRT---LVFCNSISSVKRLTQLLTMLKCSPLPL 1107
TL + + ++++L+ + T +VF N+ S L +LL L L
Sbjct: 321 PTLRTTYVQVPLTHREAFLHVLLSTESNITKSAIVFTNTTKSADLLERLLRSLGHRVTSL 380
Query: 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
H+ + Q +R NL RFR +L+ATDVA+RGLDIP + V+++ VPR + Y+HR GR
Sbjct: 381 HSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGR 440
Query: 1168 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
TARA G + L+ ++ L + + + +K+
Sbjct: 441 TARAGRTGEAVTLVGQRDVQLVLAIEERIGRKM 473
Score = 217 (81.4 bits), Expect = 3.6e-32, Sum P(3) = 3.6e-32
Identities = 53/149 (35%), Positives = 80/149 (53%)
Query: 511 TE-KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT---LVFCNSISSVKRLTQLLTM 566
TE K + TL + + ++++L+ + T +VF N+ S L +LL
Sbjct: 313 TEAKDTVPPTLRTTYVQVPLTHREAFLHVLLSTESNITKSAIVFTNTTKSADLLERLLRS 372
Query: 567 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626
L LH+ + Q +R NL RFR +L+ATDVA+RGLDIP + V+++ VPR +
Sbjct: 373 LGHRVTSLHSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPD 432
Query: 627 IYIHRSGRTARANNEGLTVVLIESDEIPL 655
Y+HR GRTARA G V L+ ++ L
Sbjct: 433 DYVHRVGRTARAGRTGEAVTLVGQRDVQL 461
Score = 156 (60.0 bits), Expect = 3.6e-32, Sum P(3) = 3.6e-32
Identities = 40/129 (31%), Positives = 66/129 (51%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
++A+IL PTRELA+Q+ I +K + GG Q L PH++VATPGR
Sbjct: 164 IFAVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAGRPHVVVATPGR 223
Query: 320 LWEFIQL-GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
L + I G + L ++ +V+DE DR++ G L ++ ++ RQT++
Sbjct: 224 LADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFLPGPSQRQTLLF 283
Query: 379 SGHF-PELK 386
+ PE++
Sbjct: 284 TATLTPEVR 292
Score = 113 (44.8 bits), Expect = 3.7e-35, Sum P(2) = 3.7e-35
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 133 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
K+ LE+ + E+ F + N+ ++ +L + PT IQ +P L R D
Sbjct: 83 KDALEIGLNAEENSFKAL------NVAPWLVGSLTTMAVRKPTAIQRACIPEILKGR-DC 135
Query: 193 VGAAETGSGKTLAFGIPIL 211
+G + TGSGKT+AF +PIL
Sbjct: 136 IGGSRTGSGKTIAFSVPIL 154
Score = 113 (44.8 bits), Expect = 3.7e-35, Sum P(2) = 3.7e-35
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 750 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
K+ LE+ + E+ F + N+ ++ +L + PT IQ +P L R D
Sbjct: 83 KDALEIGLNAEENSFKAL------NVAPWLVGSLTTMAVRKPTAIQRACIPEILKGR-DC 135
Query: 810 VGAAETGSGKTLAFGIPIL 828
+G + TGSGKT+AF +PIL
Sbjct: 136 IGGSRTGSGKTIAFSVPIL 154
Score = 103 (41.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A+IL PTRELA+Q+ I +K + GG Q L PH++VATPG L+
Sbjct: 166 AVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAGRPHVVVATPGRLA 225
Score = 78 (32.5 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 1231 KIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1279
++ +N PD+++HR GRTARA G + L+ ++ L + + + +K+
Sbjct: 426 EVPRN-PDDYVHRVGRTARAGRTGEAVTLVGQRDVQLVLAIEERIGRKM 473
Score = 47 (21.6 bits), Expect = 4.9e-06, Sum P(3) = 4.9e-06
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT-VVLIESDEI 653
TD+ ++ +++ G HV+ R ++ +I+ SG A + + VVL E+D +
Sbjct: 201 TDMRSQAIELAGRPHVVVATPGRLAD-HINTSGTDTVAGLKRVRMVVLDEADRL 253
Score = 42 (19.8 bits), Expect = 2.2e-20, Sum P(3) = 2.2e-20
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 361 LDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
L RV M + + ++ G L ++ ++ RQT +F+ATLT
Sbjct: 239 LKRVRMVVLDEADR-LLSPGPGSMLPDVETCLSFLPGPSQRQTLLFTATLT 288
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 321 (118.1 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 90/315 (28%), Positives = 148/315 (46%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 936
YA+I+APTRELA Q++ G+ ++ VVGG+S E+Q R+ C I++ATPGR
Sbjct: 473 YAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGC-EIVIATPGR 531
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + L + Y+V+DE DRMI+ G P+++ IL+ + +T + +
Sbjct: 532 LIDVLENRYLVLNQC---TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEE---A 585
Query: 997 ATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
T P+++RL ++ P V + +G TE
Sbjct: 586 EDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTY-LRRPATVYIGS-VGKPTERTEQ 643
Query: 1057 KI--LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+ + ++D++ + + ++F N L + L L + LH Q
Sbjct: 644 IVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQE 703
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR L + IL+ATDVA RG+DI + VI+Y + +T E Y HR GRT RA
Sbjct: 704 QREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKT 763
Query: 1175 GLTLVLIESDEIPLY 1189
G + + D+ L+
Sbjct: 764 GCAISFVTKDDSALF 778
Score = 192 (72.6 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 53/151 (35%), Positives = 86/151 (56%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 319
YA+I+APTRELA Q++ G+ ++ VVGG+S E+Q R+ C I++ATPGR
Sbjct: 473 YAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGC-EIVIATPGR 531
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ + L + Y+V+DE DRMI+ G P+++ IL+ + +T +P E
Sbjct: 532 LIDVLENRYLVLNQC---TYIVLDEADRMIDMGFEPDVQKILEYMPVTNL-KPDTEEAED 587
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATL 410
E K + + T + RQT +F+AT+
Sbjct: 588 ----ETKLMENFYTKKKY---RQTVMFTATM 611
Score = 161 (61.7 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 38/108 (35%), Positives = 52/108 (48%)
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++F N L + L L + LH Q QR L + IL+ATDVA RG
Sbjct: 670 IIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRG 729
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
+DI + VI+Y + +T E Y HR GRT RA G + + D+ L
Sbjct: 730 IDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKDDSAL 777
Score = 140 (54.3 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + P+ II + + G+K PT IQ +P L R DI+G AETGSGKTLAF IP+L+
Sbjct: 396 WNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLIPLLS 454
Query: 213 GI 214
I
Sbjct: 455 WI 456
Score = 140 (54.3 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + P+ II + + G+K PT IQ +P L R DI+G AETGSGKTLAF IP+L+
Sbjct: 396 WNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLIPLLS 454
Query: 830 GI 831
I
Sbjct: 455 WI 456
Score = 113 (44.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGAL 1414
A+I+APTRELA Q++ G+ ++ VVGG+S E+Q R+ C I++ATPG L
Sbjct: 474 AIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGC-EIVIATPGRL 532
Score = 58 (25.5 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLY 1268
+++ HR GRT RA G + + D+ L+
Sbjct: 748 EDYTHRIGRTGRAGKTGCAISFVTKDDSALF 778
Score = 41 (19.5 bits), Expect = 1.1e-20, Sum P(4) = 1.1e-20
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
P +E + ++ R + +YI G+ E + ++ E+D+
Sbjct: 613 PAVERLARTYLRRPATVYIGSVGKPTE-RTEQIVYMMGENDK 653
Score = 39 (18.8 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 350 ESGHFP-ELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406
ESG FP E+ +I+D+V E + ++ I G L+N D + + ET + T F
Sbjct: 398 ESG-FPKEIIDIIDKVGYKEPTPIQRQAIPIG----LQN-RDIIGVAETGSGK-TLAF 448
Score = 37 (18.1 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 372 PRQTMIESGHFP-ELKNILDRVTMTE-TSQPRQ 402
P ++ ESG FP E+ +I+D+V E T RQ
Sbjct: 392 PIRSWNESG-FPKEIIDIIDKVGYKEPTPIQRQ 423
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 216 (81.1 bits), Expect = 4.1e-35, Sum P(3) = 4.1e-35
Identities = 47/125 (37%), Positives = 72/125 (57%)
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
+L G L+F ++ +V++L+ LT LH NQ +R + + F++ +IL+
Sbjct: 546 LLLSQGSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILI 605
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDVAARGLDIP I++V++Y R E + HR GRT RA N G+ LI +I + +
Sbjct: 606 ATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDL 665
Query: 1193 FNSLE 1197
+LE
Sbjct: 666 IKNLE 670
Score = 206 (77.6 bits), Expect = 6.8e-33, Sum P(3) = 6.8e-33
Identities = 45/114 (39%), Positives = 67/114 (58%)
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
+L G L+F ++ +V++L+ LT LH NQ +R + + F++ +IL+
Sbjct: 546 LLLSQGSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILI 605
Query: 600 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
ATDVAARGLDIP I++V++Y R E + HR GRT RA N G+ LI +I
Sbjct: 606 ATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDI 659
Score = 205 (77.2 bits), Expect = 4.1e-35, Sum P(3) = 4.1e-35
Identities = 50/120 (41%), Positives = 73/120 (60%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
AL LAPTRELA Q+ L KY +K + GG+S ++Q + L I+VATPGRL
Sbjct: 381 ALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLI 440
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ I+L T+L +++YLV+DE D+M + G P++ +I++ V RQT +FSAT
Sbjct: 441 DMIKL---KATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVR-----PDRQTLLFSAT 492
Score = 194 (73.4 bits), Expect = 5.7e-34, Sum P(3) = 5.7e-34
Identities = 48/121 (39%), Positives = 72/121 (59%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
AL LAPTRELA Q+ L KY +K + GG+S ++Q + L I+VATPGRL
Sbjct: 381 ALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLI 440
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ I+L T+L +++YLV+DE D+M + G P++ +I++ V RQT++ S
Sbjct: 441 DMIKL---KATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVR-----PDRQTLLFSAT 492
Query: 382 F 382
F
Sbjct: 493 F 493
Score = 116 (45.9 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 30/68 (44%), Positives = 39/68 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL LAPTRELA Q+ L KY +K + GG+S ++Q + L I+VATPG L
Sbjct: 381 ALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRL- 439
Query: 1416 LKRIDLAK 1423
ID+ K
Sbjct: 440 ---IDMIK 444
Score = 107 (42.7 bits), Expect = 4.1e-35, Sum P(3) = 4.1e-35
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 204
D+ + + + + +++A+ ++ +TPT IQ +P AL R D++ A+TGSGKT
Sbjct: 299 DLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGR-DLIAIAKTGSGKTA 357
Query: 205 AFGIPILTGIVNK 217
F P ++ I+++
Sbjct: 358 TFIWPSISHIMDQ 370
Score = 107 (42.7 bits), Expect = 4.1e-35, Sum P(3) = 4.1e-35
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 821
D+ + + + + +++A+ ++ +TPT IQ +P AL R D++ A+TGSGKT
Sbjct: 299 DLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGR-DLIAIAKTGSGKTA 357
Query: 822 AFGIPILTGIVNK 834
F P ++ I+++
Sbjct: 358 TFIWPSISHIMDQ 370
Score = 68 (29.0 bits), Expect = 9.0e-20, Sum P(3) = 9.0e-20
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 1242 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1276
HR GRT RA N G+ LI +I + + +LE
Sbjct: 636 HRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLE 670
Score = 43 (20.2 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399
+++ R+I+ K L+RV+ + + M + G P++ +I++ V
Sbjct: 431 IIVATPGRLIDMIKLKATK--LNRVSYLVLDEADK-MFDFGFGPQVLSIVNHVR-----P 482
Query: 400 PRQTFVFSAT 409
RQT +FSAT
Sbjct: 483 DRQTLLFSAT 492
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 211 (79.3 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 49/120 (40%), Positives = 72/120 (60%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
AL+LAPTRELA Q+Q + G + V+ CV GG Q+R L + I++ATPGRL
Sbjct: 357 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLI 416
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+F+ G T L + YLV+DE DRM++ G P+++ I+ ++ RQT ++SAT
Sbjct: 417 DFLSAGS---TNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR-----PDRQTLMWSAT 468
Score = 211 (79.3 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 50/130 (38%), Positives = 77/130 (59%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
AL+LAPTRELA Q+Q + G + V+ CV GG Q+R L + I++ATPGRL
Sbjct: 357 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLI 416
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+F+ G T L + YLV+DE DRM++ G P+++ I+ ++ RQT++ S
Sbjct: 417 DFLSAGS---TNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR-----PDRQTLMWSAT 468
Query: 382 FP-ELKNILD 390
+P E+K + +
Sbjct: 469 WPKEVKQLAE 478
Score = 196 (74.1 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 42/107 (39%), Positives = 65/107 (60%)
Query: 538 YFILQHPGRTLVFCNSISSVKRLTQLLTM--LKCSPLPLHASMNQRQRLKNLDRFRDQNN 595
Y + PG+ ++F + V L + + ++C + H +Q +R L FR +
Sbjct: 524 YDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAI--HGDKSQSERDFVLREFRSGKS 581
Query: 596 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
+IL+ATDVAARGLD+ GI++VI++ P+ SE YIHR GRT R+N +G
Sbjct: 582 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKG 628
Score = 196 (74.1 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 42/107 (39%), Positives = 65/107 (60%)
Query: 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTM--LKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
Y + PG+ ++F + V L + + ++C + H +Q +R L FR +
Sbjct: 524 YDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAI--HGDKSQSERDFVLREFRSGKS 581
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
+IL+ATDVAARGLD+ GI++VI++ P+ SE YIHR GRT R+N +G
Sbjct: 582 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKG 628
Score = 118 (46.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+LAPTRELA Q+Q + G + V+ CV GG Q+R L + I++ATPG L
Sbjct: 357 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRL 415
Score = 115 (45.5 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 22/66 (33%), Positives = 44/66 (66%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + ++P+ +++ + ++G+K PT IQ+ P A+ + + VG A+TGSGKTL + +P +
Sbjct: 282 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAM-SGSNFVGIAKTGSGKTLGYILPAI 340
Query: 212 TGIVNK 217
I N+
Sbjct: 341 VHINNQ 346
Score = 115 (45.5 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 22/66 (33%), Positives = 44/66 (66%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + ++P+ +++ + ++G+K PT IQ+ P A+ + + VG A+TGSGKTL + +P +
Sbjct: 282 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAM-SGSNFVGIAKTGSGKTLGYILPAI 340
Query: 829 TGIVNK 834
I N+
Sbjct: 341 VHINNQ 346
Score = 54 (24.1 bits), Expect = 2.1e-20, Sum P(3) = 2.1e-20
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 1225 IEYLESKIKKNRPDNWLHRSGRTARANNEG 1254
I+Y+ + ++++HR GRT R+N +G
Sbjct: 599 IKYVINFDYPQNSEDYIHRIGRTGRSNTKG 628
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 215 (80.7 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 46/119 (38%), Positives = 71/119 (59%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA+Q+Q G + +K C+ GG+ Q+R L K I++ATPGRL +
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
++ + T L ++ YLV+DE DRM++ G P+++ I+ + RQT +SAT
Sbjct: 236 MMESNN---TNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIR-----PDRQTLYWSAT 286
Score = 211 (79.3 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 45/122 (36%), Positives = 72/122 (59%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA+Q+Q G + +K C+ GG+ Q+R L K I++ATPGRL +
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ + T L ++ YLV+DE DRM++ G P+++ I+ + RQT+ S +
Sbjct: 236 MMESNN---TNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIR-----PDRQTLYWSATW 287
Query: 383 PE 384
P+
Sbjct: 288 PK 289
Score = 177 (67.4 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R LVF ++ ++T+ L M L +H +Q +R L FR + I+ ATDVAA
Sbjct: 346 RILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAA 405
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
RGLD+ +++VI+Y P + E Y+HR GRT RA +G
Sbjct: 406 RGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG 442
Score = 177 (67.4 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
R LVF ++ ++T+ L M L +H +Q +R L FR + I+ ATDVAA
Sbjct: 346 RILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAA 405
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
RGLD+ +++VI+Y P + E Y+HR GRT RA +G
Sbjct: 406 RGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG 442
Score = 132 (51.5 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 29/68 (42%), Positives = 41/68 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L+LAPTRELA+Q+Q G + +K C+ GG+ Q+R L K I++ATPG L
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-- 233
Query: 1417 KRIDLAKS 1424
ID+ +S
Sbjct: 234 --IDMMES 239
Score = 121 (47.7 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 133 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
++L E+ T +D+ + + P+ ++ + + GF PT IQS P A+ R D+
Sbjct: 82 RKLREI-TVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGR-DL 139
Query: 193 VGAAETGSGKTLAFGIPILTGI 214
+G AETGSGKTL++ +P + +
Sbjct: 140 IGIAETGSGKTLSYLLPAIVHV 161
Score = 121 (47.7 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 750 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
++L E+ T +D+ + + P+ ++ + + GF PT IQS P A+ R D+
Sbjct: 82 RKLREI-TVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGR-DL 139
Query: 810 VGAAETGSGKTLAFGIPILTGI 831
+G AETGSGKTL++ +P + +
Sbjct: 140 IGIAETGSGKTLSYLLPAIVHV 161
Score = 49 (22.3 bits), Expect = 7.6e-22, Sum P(3) = 7.6e-22
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 1223 KSIEYLESKIKKNRPDNWLHRSGRTARANNEG 1254
K ++Y+ + ++++HR GRT RA +G
Sbjct: 411 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG 442
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 205 (77.2 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 49/129 (37%), Positives = 73/129 (56%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
K R + ALIL PTRELA Q+ ++ D KY ++ V GG+S Q+ L +LV
Sbjct: 71 KGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLV 130
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + L H + +L ++ LV+DE DRM++ G +++ +L T+ RQ
Sbjct: 131 ATPGRL---LDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVL-----TKLPAKRQ 182
Query: 992 TFVFSATLT 1000
+FSAT +
Sbjct: 183 NLLFSATFS 191
Score = 196 (74.1 bits), Expect = 4.8e-34, Sum P(3) = 4.8e-34
Identities = 48/139 (34%), Positives = 78/139 (56%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
K R + ALIL PTRELA Q+ ++ D KY ++ V GG+S Q+ L +LV
Sbjct: 71 KGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLV 130
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + L H + +L ++ LV+DE DRM++ G +++ +L T+ RQ
Sbjct: 131 ATPGRL---LDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVL-----TKLPAKRQ 182
Query: 375 TMIESGHFPE-LKNILDRV 392
++ S F + +K + +++
Sbjct: 183 NLLFSATFSDDIKALAEKL 201
Score = 186 (70.5 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 54/190 (28%), Positives = 92/190 (48%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRTLVFC 1084
IK L + L + +P +++ + + +T+ K L + I + + + LVF
Sbjct: 194 IKALAEKL-LHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFT 252
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
+ L + L +H + +Q R + L F+ + +L+ATD+AARGLDI
Sbjct: 253 RTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIE 312
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD--- 1201
+ HV++Y +P E Y+HR GRT RA G L L+ DE L + L+K++
Sbjct: 313 ELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIA 372
Query: 1202 LPDFPIDESV 1211
+P + D S+
Sbjct: 373 IPGYEPDPSI 382
Score = 172 (65.6 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 37/110 (33%), Positives = 60/110 (54%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ LVF + L + L +H + +Q R + L F+ + +L+ATD+AA
Sbjct: 247 QVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAA 306
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA--NNEGLTVVLIESDEI 653
RGLDI + HV++Y +P E Y+HR GRT RA E L++V ++ ++
Sbjct: 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356
Score = 121 (47.7 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 41/131 (31%), Positives = 59/131 (45%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
ALIL PTRELA Q+ ++ D KY ++ V GG+S Q+ L +LVATPG L
Sbjct: 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLL 137
Query: 1415 SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
L+ + K ++ +E + + D L DM ++ R+N L S
Sbjct: 138 DLEHQNAVK-LDQVEILVL-DEADRML-----DMGFIHDIRRVLTKLPAKRQNLLFSATF 190
Query: 1475 VSKRKELQSLL 1485
K L L
Sbjct: 191 SDDIKALAEKL 201
Score = 120 (47.3 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 21/56 (37%), Positives = 40/56 (71%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
I+RA+ ++G++ PT IQ +P A+L +D++ +A+TG+GKT F +P+L ++ +
Sbjct: 12 ILRAVAEQGYREPTPIQQQAIP-AVLEGRDLMASAQTGTGKTAGFTLPLLQHLITR 66
Score = 120 (47.3 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 21/56 (37%), Positives = 40/56 (71%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
I+RA+ ++G++ PT IQ +P A+L +D++ +A+TG+GKT F +P+L ++ +
Sbjct: 12 ILRAVAEQGYREPTPIQQQAIP-AVLEGRDLMASAQTGTGKTAGFTLPLLQHLITR 66
Score = 74 (31.1 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD---LPDFPIDESV 1290
N P++++HR GRT RA G L L+ DE L + L+K++ +P + D S+
Sbjct: 324 NVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSI 382
Score = 46 (21.3 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 347 RMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406
R+++ H +K LD+V + + + M++ G +++ +L T+ RQ +F
Sbjct: 135 RLLDLEHQNAVK--LDQVEILVLDEADR-MLDMGFIHDIRRVL-----TKLPAKRQNLLF 186
Query: 407 SATLT 411
SAT +
Sbjct: 187 SATFS 191
Score = 43 (20.2 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1409 ATPGALSLKRIDLAKSIEYLESKIKKNRP 1437
AT ALSL +D K + +E +KK P
Sbjct: 341 ATGEALSLVCVDEHKLLRDIEKLLKKEIP 369
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 336 (123.3 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 88/316 (27%), Positives = 147/316 (46%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
YA+I+APTRELA Q++ GK +K V+GG S E Q L +++ATPGRL
Sbjct: 380 YAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRL 439
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+ ++ + L + Y+++DE DRM++ G P+++ +L+ M +T+ + T F
Sbjct: 440 LDVLENRYLLLNQC---TYVILDEADRMLDMGFEPDVQKVLEY--MPDTNMKKDTDEFDN 494
Query: 998 TLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 1057
+I+RL ++ P +V + T+ + +
Sbjct: 495 EEA-LMKGFSTREKYRQTVMFTATMSSAIERLARQY-LRRPAVVHIGSAGKPTERVEQVV 552
Query: 1058 ILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
+ D K L + Q ++F N L++ LT L P LH Q QR
Sbjct: 553 YMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQR 612
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
L ++ + IL+ATDVA RG+D+ + V++Y + ++ E Y HR GRT RA G
Sbjct: 613 EYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGK 672
Query: 1177 TLVLIESDEIPLYIKM 1192
+ + D+ +Y +
Sbjct: 673 AITFLTPDDTAVYFDL 688
Score = 194 (73.4 bits), Expect = 7.0e-33, Sum P(3) = 7.0e-33
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
YA+I+APTRELA Q++ GK +K V+GG S E Q L +++ATPGRL
Sbjct: 380 YAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRL 439
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
+ ++ + L + Y+++DE DRM++ G P+++ +L+ M +T+ + T
Sbjct: 440 LDVLENRYLLLNQC---TYVILDEADRMLDMGFEPDVQKVLEY--MPDTNMKKDT----D 490
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLT 411
F + ++ + E + RQT +F+AT++
Sbjct: 491 EFDNEEALMKGFSTRE--KYRQTVMFTATMS 519
Score = 177 (67.4 bits), Expect = 7.0e-33, Sum P(3) = 7.0e-33
Identities = 46/165 (27%), Positives = 76/165 (46%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRT 547
T+ I+ L ++ P +V + T+ + + + D K L + Q
Sbjct: 517 TMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKRKKLVEVLESQFQPPI 576
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++F N L++ LT L P LH Q QR L ++ + IL+ATDVA RG
Sbjct: 577 IIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRG 636
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+D+ + V++Y + ++ E Y HR GRT RA G + + D+
Sbjct: 637 IDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDD 681
Score = 143 (55.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 55/238 (23%), Positives = 110/238 (46%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ W + P+ + +A+ + G+ PT IQ +P L R D++G AETGSGKT AF +P
Sbjct: 300 LRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNR-DVIGVAETGSGKTAAFLLP 358
Query: 827 ILTGIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTR 886
+L I + + T +F K K ++I +R
Sbjct: 359 LLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASR 418
Query: 887 E---LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943
E + +++ ++ A TP ++ V+ E + +LN+C ++++ R+ + +
Sbjct: 419 EDQGMKLRMGVEVVIA---TPGRLLDVL-----ENRYLLLNQCTYVILDEADRM---LDM 467
Query: 944 GHFHLTELYKI-NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000
G F ++ K+ Y+ +T+ ++ F + ++ + E + RQT +F+AT++
Sbjct: 468 G-FE-PDVQKVLEYM--PDTNMKKDTDEFDNEEALMKGFSTRE--KYRQTVMFTATMS 519
Score = 131 (51.2 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ W + P+ + +A+ + G+ PT IQ +P L R D++G AETGSGKT AF +P
Sbjct: 300 LRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNR-DVIGVAETGSGKTAAFLLP 358
Query: 210 ILTGIVN--KLE 219
+L I + K+E
Sbjct: 359 LLVWITSLPKME 370
Score = 112 (44.5 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A+I+APTRELA Q++ GK +K V+GG S E Q L +++ATPG L
Sbjct: 381 AIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRL 439
Score = 63 (27.2 bits), Expect = 4.2e-21, Sum P(3) = 4.2e-21
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 1207 IDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIP 1266
ID +SL+ D+AKSIE ++ HR GRT RA G + + D+
Sbjct: 637 IDVKDVSLVLN-YDMAKSIE------------DYTHRIGRTGRAGKHGKAITFLTPDDTA 683
Query: 1267 LYIKM 1271
+Y +
Sbjct: 684 VYFDL 688
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 218 (81.8 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 49/141 (34%), Positives = 78/141 (55%)
Query: 1074 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
L P +VFCN+ + + L + S L LH + QR R + L RF + + +L+A
Sbjct: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TDVAARGLDI +E V+++ + E+++HR GRTARA N GL + +E +
Sbjct: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIIS 357
Query: 1194 NSLEKKVDLPDFPIDESVLSL 1214
+ L+ K++ P + S+ +L
Sbjct: 358 DMLQIKLNWQTPPANSSIATL 378
Score = 212 (79.7 bits), Expect = 8.5e-34, Sum P(3) = 8.5e-34
Identities = 44/112 (39%), Positives = 65/112 (58%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
L P +VFCN+ + + L + S L LH + QR R + L RF + + +L+A
Sbjct: 238 LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
TDVAARGLDI +E V+++ + E+++HR GRTARA N GL + +E
Sbjct: 298 TDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
Score = 185 (70.2 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 51/121 (42%), Positives = 66/121 (54%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
AL+L PTRELA QV + ++ P K+ + GG Q L PHI+VATPGRL
Sbjct: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRL 133
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+ +Q G L L N LV+DE DRM++ G F + I D + S RQT +FSA
Sbjct: 134 LDHLQKGTVSLDAL---NTLVMDEADRMLDMG-FSDA--IDDVIRFAPAS--RQTLLFSA 185
Query: 998 T 998
T
Sbjct: 186 T 186
Score = 181 (68.8 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 50/124 (40%), Positives = 67/124 (54%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
AL+L PTRELA QV + ++ P K+ + GG Q L PHI+VATPGRL
Sbjct: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRL 133
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
+ +Q G L L N LV+DE DRM++ G F + I D + S RQT++ S
Sbjct: 134 LDHLQKGTVSLDAL---NTLVMDEADRMLDMG-FSDA--IDDVIRFAPAS--RQTLLFSA 185
Query: 381 HFPE 384
+PE
Sbjct: 186 TWPE 189
Score = 118 (46.6 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 38/122 (31%), Positives = 57/122 (46%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVAT 1410
+ AL+L PTRELA QV + ++ P K+ + GG Q L PHI+VAT
Sbjct: 70 FQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129
Query: 1411 PGALSLKRIDLAK-SIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENAL 1469
PG L L + S++ L + + + D L DM +++I+ SR+ L
Sbjct: 130 PGRL-LDHLQKGTVSLDALNTLVM-DEADRML-----DMGFSDAIDDVIRFAPASRQTLL 182
Query: 1470 MS 1471
S
Sbjct: 183 FS 184
Score = 105 (42.0 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+P + L + G+ T T +Q+ +P A+LA KD+ A+TGSGKT AFG+ +L I
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALP-AILAGKDVRVQAKTGSGKTAAFGLGLLQQI 65
Score = 105 (42.0 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+P + L + G+ T T +Q+ +P A+LA KD+ A+TGSGKT AFG+ +L I
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALP-AILAGKDVRVQAKTGSGKTAAFGLGLLQQI 65
Score = 73 (30.8 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1278
+D+ KS+E + + P+ +HR GRTARA N GL + +E + + L+ K
Sbjct: 305 LDI-KSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIK 363
Query: 1279 VDLPDFPIDESVLSL 1293
++ P + S+ +L
Sbjct: 364 LNWQTPPANSSIATL 378
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 210 (79.0 bits), Expect = 7.4e-35, Sum P(4) = 7.4e-35
Identities = 54/125 (43%), Positives = 73/125 (58%)
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
++ AL+L PTRELA QV + + K T +K+ V GG S + QL L IL+ATPG
Sbjct: 81 EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPG 140
Query: 936 RLWEFIQLGHFHLTELY--KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
RL L H H+ L+ K+ LV+DE DRM++ G P+L+ +L R+ S RQT
Sbjct: 141 RL-----LDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRL-----SPLRQTL 190
Query: 994 VFSAT 998
FSAT
Sbjct: 191 FFSAT 195
Score = 202 (76.2 bits), Expect = 4.3e-34, Sum P(4) = 4.3e-34
Identities = 54/137 (39%), Positives = 78/137 (56%)
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
++ AL+L PTRELA QV + + K T +K+ V GG S + QL L IL+ATPG
Sbjct: 81 EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPG 140
Query: 319 RLWEFIQLGHFHLTELY--KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
RL L H H+ L+ K+ LV+DE DRM++ G P+L+ +L R+ S RQT+
Sbjct: 141 RL-----LDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRL-----SPLRQTL 190
Query: 377 IESGHFP-ELKNILDRV 392
S F ++K + R+
Sbjct: 191 FFSATFDSKIKAVAYRI 207
Score = 189 (71.6 bits), Expect = 4.3e-34, Sum P(4) = 4.3e-34
Identities = 51/154 (33%), Positives = 76/154 (49%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRL 560
++ P V +T +T+ + K L Y I ++ + LVF + L
Sbjct: 208 MRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDAL 267
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L + + ++ +Q R K LD F+ L+ATDVAARGLDI +E V++Y
Sbjct: 268 AEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYD 327
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
+P +E Y+HR GRT RA GL V L+ DE P
Sbjct: 328 MPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQP 361
Score = 187 (70.9 bits), Expect = 7.4e-35, Sum P(4) = 7.4e-35
Identities = 53/166 (31%), Positives = 81/166 (48%)
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTL 1081
D IK + + ++ P V +T +T+ + K L Y I ++ + L
Sbjct: 197 DSKIKAVAYRI-MRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVL 255
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF + L + L + + ++ +Q R K LD F+ L+ATDVAARGL
Sbjct: 256 VFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGL 315
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
DI +E V++Y +P +E Y+HR GRT RA GL + L+ DE P
Sbjct: 316 DIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQP 361
Score = 114 (45.2 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 28/59 (47%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA QV + + K T +K+ V GG S + QL L IL+ATPG L
Sbjct: 84 ALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRL 142
Score = 110 (43.8 bits), Expect = 7.4e-35, Sum P(4) = 7.4e-35
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ + ++ L + G PT IQ +P L KD++ A+TG+GKT AFG+P++
Sbjct: 10 QLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQG-KDVLAGAQTGTGKTAAFGLPLIQRF 68
Query: 215 VNK 217
+ +
Sbjct: 69 IEQ 71
Score = 110 (43.8 bits), Expect = 7.4e-35, Sum P(4) = 7.4e-35
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ + ++ L + G PT IQ +P L KD++ A+TG+GKT AFG+P++
Sbjct: 10 QLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQG-KDVLAGAQTGTGKTAAFGLPLIQRF 68
Query: 832 VNK 834
+ +
Sbjct: 69 IEQ 71
Score = 73 (30.8 bits), Expect = 3.5e-23, Sum P(4) = 3.5e-23
Identities = 33/110 (30%), Positives = 49/110 (44%)
Query: 1164 RSGRTARANN---EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1220
R G A A +G+ V I D K + +K +D DF + V +LI +
Sbjct: 261 RQGSDALAEELKLDGIKAVSINGD------KSQGARQKALD--DFKAGK-VRALIATDVA 311
Query: 1221 L-AKSIEYLESKIKKNRP---DNWLHRSGRTARANNEGLTLVLIESDEIP 1266
I LE + + P ++++HR GRT RA GL + L+ DE P
Sbjct: 312 ARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQP 361
Score = 61 (26.5 bits), Expect = 1.8e-19, Sum P(4) = 1.8e-19
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399
++I R+++ H L L +V + + + M++ G P+L+ +L R+ S
Sbjct: 134 ILIATPGRLLDHAHVKSL--FLGKVEVLVLDEADR-MLDMGFMPDLQRVLRRL-----SP 185
Query: 400 PRQTFVFSAT 409
RQT FSAT
Sbjct: 186 LRQTLFFSAT 195
Score = 39 (18.8 bits), Expect = 7.4e-35, Sum P(4) = 7.4e-35
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 1413 ALSLKRIDLAKSIEYLESKIKKNRPDNWLE 1442
A+SL D +E +E + P WL+
Sbjct: 351 AVSLLSHDEQPQLEAIERLLNTRLPQEWLK 380
Score = 37 (18.1 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 484 ILQHPGRTLCEEIQDLLNIKSPK 506
+L H + E I+ LLN + P+
Sbjct: 354 LLSHDEQPQLEAIERLLNTRLPQ 376
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 210 (79.0 bits), Expect = 7.4e-35, Sum P(4) = 7.4e-35
Identities = 54/125 (43%), Positives = 73/125 (58%)
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935
++ AL+L PTRELA QV + + K T +K+ V GG S + QL L IL+ATPG
Sbjct: 81 EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPG 140
Query: 936 RLWEFIQLGHFHLTELY--KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
RL L H H+ L+ K+ LV+DE DRM++ G P+L+ +L R+ S RQT
Sbjct: 141 RL-----LDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRL-----SPLRQTL 190
Query: 994 VFSAT 998
FSAT
Sbjct: 191 FFSAT 195
Score = 202 (76.2 bits), Expect = 4.3e-34, Sum P(4) = 4.3e-34
Identities = 54/137 (39%), Positives = 78/137 (56%)
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 318
++ AL+L PTRELA QV + + K T +K+ V GG S + QL L IL+ATPG
Sbjct: 81 EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPG 140
Query: 319 RLWEFIQLGHFHLTELY--KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
RL L H H+ L+ K+ LV+DE DRM++ G P+L+ +L R+ S RQT+
Sbjct: 141 RL-----LDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRL-----SPLRQTL 190
Query: 377 IESGHFP-ELKNILDRV 392
S F ++K + R+
Sbjct: 191 FFSATFDSKIKAVAYRI 207
Score = 189 (71.6 bits), Expect = 4.3e-34, Sum P(4) = 4.3e-34
Identities = 51/154 (33%), Positives = 76/154 (49%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRL 560
++ P V +T +T+ + K L Y I ++ + LVF + L
Sbjct: 208 MRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDAL 267
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L + + ++ +Q R K LD F+ L+ATDVAARGLDI +E V++Y
Sbjct: 268 AEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYD 327
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
+P +E Y+HR GRT RA GL V L+ DE P
Sbjct: 328 MPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQP 361
Score = 187 (70.9 bits), Expect = 7.4e-35, Sum P(4) = 7.4e-35
Identities = 53/166 (31%), Positives = 81/166 (48%)
Query: 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTL 1081
D IK + + ++ P V +T +T+ + K L Y I ++ + L
Sbjct: 197 DSKIKAVAYRI-MRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVL 255
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF + L + L + + ++ +Q R K LD F+ L+ATDVAARGL
Sbjct: 256 VFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGL 315
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
DI +E V++Y +P +E Y+HR GRT RA GL + L+ DE P
Sbjct: 316 DIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQP 361
Score = 114 (45.2 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 28/59 (47%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA QV + + K T +K+ V GG S + QL L IL+ATPG L
Sbjct: 84 ALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRL 142
Score = 110 (43.8 bits), Expect = 7.4e-35, Sum P(4) = 7.4e-35
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ + ++ L + G PT IQ +P L KD++ A+TG+GKT AFG+P++
Sbjct: 10 QLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQG-KDVLAGAQTGTGKTAAFGLPLIQRF 68
Query: 215 VNK 217
+ +
Sbjct: 69 IEQ 71
Score = 110 (43.8 bits), Expect = 7.4e-35, Sum P(4) = 7.4e-35
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ + ++ L + G PT IQ +P L KD++ A+TG+GKT AFG+P++
Sbjct: 10 QLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQG-KDVLAGAQTGTGKTAAFGLPLIQRF 68
Query: 832 VNK 834
+ +
Sbjct: 69 IEQ 71
Score = 73 (30.8 bits), Expect = 3.5e-23, Sum P(4) = 3.5e-23
Identities = 33/110 (30%), Positives = 49/110 (44%)
Query: 1164 RSGRTARANN---EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1220
R G A A +G+ V I D K + +K +D DF + V +LI +
Sbjct: 261 RQGSDALAEELKLDGIKAVSINGD------KSQGARQKALD--DFKAGK-VRALIATDVA 311
Query: 1221 L-AKSIEYLESKIKKNRP---DNWLHRSGRTARANNEGLTLVLIESDEIP 1266
I LE + + P ++++HR GRT RA GL + L+ DE P
Sbjct: 312 ARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQP 361
Score = 61 (26.5 bits), Expect = 1.8e-19, Sum P(4) = 1.8e-19
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399
++I R+++ H L L +V + + + M++ G P+L+ +L R+ S
Sbjct: 134 ILIATPGRLLDHAHVKSL--FLGKVEVLVLDEADR-MLDMGFMPDLQRVLRRL-----SP 185
Query: 400 PRQTFVFSAT 409
RQT FSAT
Sbjct: 186 LRQTLFFSAT 195
Score = 39 (18.8 bits), Expect = 7.4e-35, Sum P(4) = 7.4e-35
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 1413 ALSLKRIDLAKSIEYLESKIKKNRPDNWLE 1442
A+SL D +E +E + P WL+
Sbjct: 351 AVSLLSHDEQPQLEAIERLLNTRLPQEWLK 380
Score = 37 (18.1 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 484 ILQHPGRTLCEEIQDLLNIKSPK 506
+L H + E I+ LLN + P+
Sbjct: 354 LLSHDEQPQLEAIERLLNTRLPQ 376
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 216 (81.1 bits), Expect = 7.9e-35, Sum P(4) = 7.9e-35
Identities = 44/151 (29%), Positives = 84/151 (55%)
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
+H++ ++ + +++ ++F + +S L + L + PLH MNQ+ R + +
Sbjct: 228 QHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAV 287
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
++ ++ IL+ATDVAARGLD+ I HV++Y +P +E Y+HR GRT RA G+ ++
Sbjct: 288 EQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILF 347
Query: 1181 IESDEIPLYIKMFNSLEKKVDLPDFPIDESV 1211
+ S E+ + + + ++ P E+V
Sbjct: 348 VTSREMRMLRTIERATNSRISPMKVPSPETV 378
Score = 215 (80.7 bits), Expect = 3.3e-34, Sum P(4) = 3.3e-34
Identities = 46/166 (27%), Positives = 93/166 (56%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKI-LCKHDEKDSYLYYFILQHPGRT 547
T+ E+I+ + N +K+ + + ++ + + + +H++ ++ + +++
Sbjct: 188 TMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGI 247
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++F + +S L + L + PLH MNQ+ R + +++ ++ IL+ATDVAARG
Sbjct: 248 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARG 307
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
LD+ I HV++Y +P +E Y+HR GRT RA G+ ++ + S E+
Sbjct: 308 LDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREM 353
Score = 173 (66.0 bits), Expect = 7.9e-35, Sum P(4) = 7.9e-35
Identities = 44/121 (36%), Positives = 66/121 (54%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
L+LAPTRELA+QV K+ V + GG S ++QL L + P ++V TPGR+
Sbjct: 77 LVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGTPGRVM 136
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ ++ G L L LV+DE D M++ G +++ IL+ T RQ +FSAT
Sbjct: 137 DHMRRGTLKLETLQA---LVLDEADEMLKMGFIDDIEWILEH-----TPPQRQLALFSAT 188
Query: 999 L 999
+
Sbjct: 189 M 189
Score = 168 (64.2 bits), Expect = 2.6e-34, Sum P(4) = 2.6e-34
Identities = 44/131 (33%), Positives = 69/131 (52%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
L+LAPTRELA+QV K+ V + GG S ++QL L + P ++V TPGR+
Sbjct: 77 LVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGTPGRVM 136
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ ++ G L L LV+DE D M++ G +++ IL+ T RQ + S
Sbjct: 137 DHMRRGTLKLETLQA---LVLDEADEMLKMGFIDDIEWILEH-----TPPQRQLALFSAT 188
Query: 382 FPE-LKNILDR 391
PE +K + ++
Sbjct: 189 MPEQIKRVANK 199
Score = 129 (50.5 bits), Expect = 7.9e-35, Sum P(4) = 7.9e-35
Identities = 26/63 (41%), Positives = 43/63 (68%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ + E ++RAL + G++ PT IQS + L+A KDI+G A+TG+GKT AF +P+L +
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASI-DPLMAGKDILGQAQTGTGKTGAFALPLLNKV 68
Query: 215 VNK 217
++
Sbjct: 69 TSQ 71
Score = 129 (50.5 bits), Expect = 7.9e-35, Sum P(4) = 7.9e-35
Identities = 26/63 (41%), Positives = 43/63 (68%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ + E ++RAL + G++ PT IQS + L+A KDI+G A+TG+GKT AF +P+L +
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASI-DPLMAGKDILGQAQTGTGKTGAFALPLLNKV 68
Query: 832 VNK 834
++
Sbjct: 69 TSQ 71
Score = 110 (43.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
L+LAPTRELA+QV K+ V + GG S ++QL L + P ++V TPG
Sbjct: 77 LVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGTPG 133
Score = 64 (27.6 bits), Expect = 6.1e-19, Sum P(4) = 6.1e-19
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESV 1290
++HR GRT RA G+ ++ + S E+ + + + ++ P E+V
Sbjct: 328 YVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMKVPSPETV 378
Score = 42 (19.8 bits), Expect = 7.9e-35, Sum P(4) = 7.9e-35
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 1367 IQVQNHILDAGKYTPVKVACVVGGMSTEKQL 1397
+++ +++D G+ V V +VG ++ E +
Sbjct: 487 LKMCRYVIDVGRENGVGVGNIVGAIANEANI 517
Score = 42 (19.8 bits), Expect = 3.3e-34, Sum P(4) = 3.3e-34
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQL 920
+++ +++D G+ V V +VG ++ E +
Sbjct: 487 LKMCRYVIDVGRENGVGVGNIVGAIANEANI 517
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 212 (79.7 bits), Expect = 8.5e-35, Sum P(3) = 8.5e-35
Identities = 53/179 (29%), Positives = 93/179 (51%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGRTLVFCNSISSVK 1091
+ P ++ L + + L S L + D K + L + +++ +T+VF + +
Sbjct: 293 LTEPVLIRLDVDSKLNEQLKTSFFLVREDAKAAVLLHLLRNVVRPQDQTVVFVATKHHAE 352
Query: 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151
L++LL S ++++++Q R NL RF S L+ TD+AARGLDIP +++VI+
Sbjct: 353 YLSELLATQGVSCAHIYSALDQTARKINLARFTHGKCSALIVTDLAARGLDIPLLDNVIN 412
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1210
Y P ++++HR GR ARA G L+ DE+P + + L + + L P + S
Sbjct: 413 YSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRALTLARPPEEPS 471
Score = 208 (78.3 bits), Expect = 6.0e-34, Sum P(3) = 6.0e-34
Identities = 49/156 (31%), Positives = 84/156 (53%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGRTLVFCNSISSVK 558
+ P ++ L + + L S L + D K + L + +++ +T+VF + +
Sbjct: 293 LTEPVLIRLDVDSKLNEQLKTSFFLVREDAKAAVLLHLLRNVVRPQDQTVVFVATKHHAE 352
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
L++LL S ++++++Q R NL RF S L+ TD+AARGLDIP +++VI+
Sbjct: 353 YLSELLATQGVSCAHIYSALDQTARKINLARFTHGKCSALIVTDLAARGLDIPLLDNVIN 412
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
Y P ++++HR GR ARA G L+ DE+P
Sbjct: 413 YSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVP 448
Score = 202 (76.2 bits), Expect = 8.5e-35, Sum P(3) = 8.5e-35
Identities = 48/121 (39%), Positives = 70/121 (57%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
ALIL+PTRELA+Q + GK+T +K A ++GG E Q L++ P I++ATPGRL
Sbjct: 169 ALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL- 227
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ + +L + Y+V DE DR+ E G +L+ I+ R+ QT +FSAT
Sbjct: 228 --VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP-----GGHQTVLFSAT 280
Query: 999 L 999
L
Sbjct: 281 L 281
Score = 198 (74.8 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 49/135 (36%), Positives = 74/135 (54%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
ALIL+PTRELA+Q + GK+T +K A ++GG E Q L++ P I++ATPGRL
Sbjct: 169 ALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL- 227
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ + +L + Y+V DE DR+ E G +L+ I+ R+ QT++ S
Sbjct: 228 --VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP-----GGHQTVLFSAT 280
Query: 382 FPELKNILDRVTMTE 396
P+L R +TE
Sbjct: 281 LPKLLVEFARAGLTE 295
Score = 145 (56.1 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALIL+PTRELA+Q + GK+T +K A ++GG E Q L++ P I++ATPG L
Sbjct: 169 ALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV 228
Query: 1416 LKRIDL---AKSIEYL 1428
+++ +S+EY+
Sbjct: 229 HVAVEMNLKLQSVEYV 244
Score = 109 (43.4 bits), Expect = 8.5e-35, Sum P(3) = 8.5e-35
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+ + + +KG+K PT IQ +P +L KD+V A TGSGKT F IP+
Sbjct: 107 VFKGIMKKGYKVPTPIQRKTIPM-ILDGKDVVAMARTGSGKTACFLIPM 154
Score = 109 (43.4 bits), Expect = 8.5e-35, Sum P(3) = 8.5e-35
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+ + + +KG+K PT IQ +P +L KD+V A TGSGKT F IP+
Sbjct: 107 VFKGIMKKGYKVPTPIQRKTIPM-ILDGKDVVAMARTGSGKTACFLIPM 154
Score = 73 (30.8 bits), Expect = 2.2e-20, Sum P(3) = 2.2e-20
Identities = 24/95 (25%), Positives = 41/95 (43%)
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN---WLHRSGRTARANNEG 1254
+K++L F + ++ I L++ I + P +LHR GR ARA G
Sbjct: 377 RKINLARFTHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSG 436
Query: 1255 LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1289
L+ DE+P + + L + + L P + S
Sbjct: 437 TAYSLVAPDEVPYLLDLHLFLGRALTLARPPEEPS 471
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 215 (80.7 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 54/178 (30%), Positives = 94/178 (52%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGRTLVFCNSISSVK 1091
+ P ++ L + + L S L + D K + L + +++ +T+VF + +
Sbjct: 293 LTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVATKHHAE 352
Query: 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151
LT+LLT + S ++++++ R NL +F S L+ TD+AARGLDIP +++VI+
Sbjct: 353 YLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVIN 412
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDE 1209
Y P ++++HR GR ARA G L+ DEIP + + L + + L P+ E
Sbjct: 413 YSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLAR-PLKE 469
Score = 211 (79.3 bits), Expect = 7.5e-34, Sum P(3) = 7.5e-34
Identities = 50/156 (32%), Positives = 85/156 (54%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGRTLVFCNSISSVK 558
+ P ++ L + + L S L + D K + L + +++ +T+VF + +
Sbjct: 293 LTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVATKHHAE 352
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
LT+LLT + S ++++++ R NL +F S L+ TD+AARGLDIP +++VI+
Sbjct: 353 YLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVIN 412
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
Y P ++++HR GR ARA G L+ DEIP
Sbjct: 413 YSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIP 448
Score = 199 (75.1 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 48/121 (39%), Positives = 70/121 (57%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
ALIL+PTRELA+Q + GK+T +K A ++GG E Q L++ P I++ATPGRL
Sbjct: 169 ALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRL- 227
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ + +L + Y+V DE DR+ E G +L+ I+ R+ QT +FSAT
Sbjct: 228 --VHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLP-----GGHQTVLFSAT 280
Query: 999 L 999
L
Sbjct: 281 L 281
Score = 195 (73.7 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 49/135 (36%), Positives = 74/135 (54%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
ALIL+PTRELA+Q + GK+T +K A ++GG E Q L++ P I++ATPGRL
Sbjct: 169 ALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRL- 227
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ + +L + Y+V DE DR+ E G +L+ I+ R+ QT++ S
Sbjct: 228 --VHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLP-----GGHQTVLFSAT 280
Query: 382 FPELKNILDRVTMTE 396
P+L R +TE
Sbjct: 281 LPKLLVEFARAGLTE 295
Score = 144 (55.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALIL+PTRELA+Q + GK+T +K A ++GG E Q L++ P I++ATPG L
Sbjct: 169 ALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLV 228
Query: 1416 LKRIDLA---KSIEYL 1428
++++ +S+EY+
Sbjct: 229 HVAVEMSLKLQSVEYV 244
Score = 108 (43.1 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+ + + +KG+K PT IQ +P +L KD+V A TGSGKT F +P+
Sbjct: 107 VFKGIMKKGYKVPTPIQRKTIP-VILDGKDVVAMARTGSGKTACFLLPM 154
Score = 108 (43.1 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+ + + +KG+K PT IQ +P +L KD+V A TGSGKT F +P+
Sbjct: 107 VFKGIMKKGYKVPTPIQRKTIP-VILDGKDVVAMARTGSGKTACFLLPM 154
Score = 82 (33.9 bits), Expect = 7.2e-21, Sum P(3) = 7.2e-21
Identities = 35/145 (24%), Positives = 60/145 (41%)
Query: 1148 HVIHYHV-PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206
H++H V P+ + + A E LT + I Y + + +K++L F
Sbjct: 329 HLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHI--YSAL-DPTARKINLAKFT 385
Query: 1207 IDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN---WLHRSGRTARANNEGLTLVLIESD 1263
+ + ++ I L++ I + P +LHR GR ARA G L+ D
Sbjct: 386 LGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPD 445
Query: 1264 EIPLYIKMFNSLEKKVDLPDFPIDE 1288
EIP + + L + + L P+ E
Sbjct: 446 EIPYLLDLHLFLGRSLTLAR-PLKE 469
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 211 (79.3 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 55/170 (32%), Positives = 86/170 (50%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHD--EKDSYLYYFILQHPGR 546
T +EI++L + P + +T + T+ + +C D +K + L I Q +
Sbjct: 187 TFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQW--ICPVDKTQKSALLIQLIKQENWQ 244
Query: 547 -TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
LVF + RL + L + S +H + +Q R K L F+ +L+ATD+AA
Sbjct: 245 QVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAA 304
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
RGLDI + V+++ +P E Y+HR GRT RA G V L+ S+EI L
Sbjct: 305 RGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKL 354
Score = 199 (75.1 bits), Expect = 3.9e-34, Sum P(3) = 3.9e-34
Identities = 53/169 (31%), Positives = 84/169 (49%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHD--EKDSYLYYFILQHPGR-TLVFCNSISSVK 1091
+ P + +T + T+ + +C D +K + L I Q + LVF +
Sbjct: 200 VNHPVEISVTPRNAAATTVKQW--ICPVDKTQKSALLIQLIKQENWQQVLVFSRTKHGAN 257
Query: 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151
RL + L + S +H + +Q R K L F+ +L+ATD+AARGLDI + V++
Sbjct: 258 RLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDIDQLPQVVN 317
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
+ +P E Y+HR GRT RA G + L+ S+EI L +K L +V
Sbjct: 318 FDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKL-LKDIERLINRV 365
Score = 193 (73.0 bits), Expect = 3.9e-34, Sum P(3) = 3.9e-34
Identities = 48/122 (39%), Positives = 66/122 (54%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
AL+L PTRELA QV + GKY P++ A V GG+ Q+ L +LVATPGRL
Sbjct: 76 ALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVATPGRLL 135
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ +Q +L LV+DE DRM++ G ++K IL + RQ +FSAT
Sbjct: 136 DLVQQNAVKFNQL---EILVLDEADRMLDMGFIRDIKKILALLPAK-----RQNLMFSAT 187
Query: 999 LT 1000
+
Sbjct: 188 FS 189
Score = 185 (70.2 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 42/100 (42%), Positives = 57/100 (57%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
AL+L PTRELA QV + GKY P++ A V GG+ Q+ L +LVATPGRL
Sbjct: 76 ALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVATPGRLL 135
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
+ +Q +L LV+DE DRM++ G ++K IL
Sbjct: 136 DLVQQNAVKFNQL---EILVLDEADRMLDMGFIRDIKKIL 172
Score = 131 (51.2 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+L PTRELA QV + GKY P++ A V GG+ Q+ L +LVATPG L
Sbjct: 76 ALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVATPGRL- 134
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNW-LEKAAK--DMXXXXXXENLIQPKANSRENALMSK 1472
+DL + ++ +K N+ + L++A + DM + ++ R+N + S
Sbjct: 135 ---LDLVQ-----QNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSA 186
Query: 1473 ALVSKRKEL-QSLLGKSVQ 1490
+ +EL + L+ V+
Sbjct: 187 TFSDEIRELAKGLVNHPVE 205
Score = 115 (45.5 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 21/48 (43%), Positives = 36/48 (75%)
Query: 164 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+A+ ++G+ TP+ IQ+ +P A+L KD++ AA+TG+GKT F +P+L
Sbjct: 14 KAVSEQGYDTPSPIQAQAIP-AVLTGKDVMAAAQTGTGKTAGFTLPLL 60
Score = 115 (45.5 bits), Expect = 3.9e-34, Sum P(3) = 3.9e-34
Identities = 21/48 (43%), Positives = 36/48 (75%)
Query: 781 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+A+ ++G+ TP+ IQ+ +P A+L KD++ AA+TG+GKT F +P+L
Sbjct: 14 KAVSEQGYDTPSPIQAQAIP-AVLTGKDVMAAAQTGTGKTAGFTLPLL 60
Score = 78 (32.5 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1279
N P++++HR GRT RA G + L+ S+EI L +K L +V
Sbjct: 322 NVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKL-LKDIERLINRV 365
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 222 (83.2 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 169 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 229 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 279
Score = 219 (82.2 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 51/129 (39%), Positives = 78/129 (60%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 169 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 229 FLESGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 280
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 281 PKEVRQLAE 289
Score = 177 (67.4 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 49/166 (29%), Positives = 81/166 (48%)
Query: 1059 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 317 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 376
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGL--DIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
+R L+ FR IL+ATDVA+RGL D+ ++ VI+Y P +SE Y+HR GRTAR+
Sbjct: 377 ERDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRTARST 436
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
N+G P +K L K ++ + I+ ++ L+ R
Sbjct: 437 NKGTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLVDHR 478
Score = 172 (65.6 bits), Expect = 8.6e-34, Sum P(3) = 8.6e-34
Identities = 42/123 (34%), Positives = 66/123 (53%)
Query: 526 LCKHDEKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
+C EKD L + + +T++F + LT+ + + +H +Q
Sbjct: 317 VCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQP 376
Query: 582 QRLKNLDRFRDQNNSILLATDVAARGL--DIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 639
+R L+ FR IL+ATDVA+RGL D+ ++ VI+Y P +SE Y+HR GRTAR+
Sbjct: 377 ERDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRTARST 436
Query: 640 NEG 642
N+G
Sbjct: 437 NKG 439
Score = 122 (48.0 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ D GK + +K C+ GG Q+R L + I +ATPG L
Sbjct: 169 LVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 226
Score = 116 (45.9 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 98 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 154
Score = 116 (45.9 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N P+ ++ L + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 98 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 154
Score = 65 (27.9 bits), Expect = 4.7e-23, Sum P(3) = 4.7e-23
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRTAR+ N+G P +K L K ++ + I+ ++ L+
Sbjct: 420 NSSEDYVHRIGRTARSTNKGTAYTFFT----PGNLKQARELIKVLEEANQAINPKLMQLV 475
Query: 1295 KKR 1297
R
Sbjct: 476 DHR 478
Score = 48 (22.0 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 251 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 279
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 219 (82.2 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 48/119 (40%), Positives = 72/119 (60%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA+Q+Q GK + ++ CV GG+ Q+R L + I +ATPGRL +
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLD 258
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ T L ++ YLV+DE DRM++ G P+++ I+D++ RQT +FSAT
Sbjct: 259 MLDSNK---TNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTVMFSAT 309
Score = 210 (79.0 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 46/122 (37%), Positives = 73/122 (59%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA+Q+Q GK + ++ CV GG+ Q+R L + I +ATPGRL +
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLD 258
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
+ T L ++ YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 259 MLDSNK---TNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTVMFSATW 310
Query: 383 PE 384
P+
Sbjct: 311 PK 312
Score = 177 (67.4 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 44/132 (33%), Positives = 68/132 (51%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+ L+F + +T+ L L +H Q +R L+ FR + I++ATDVA+
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-E 1197
RG+D+ GI HV +Y P +E Y+HR GRT RA +G SD ++ + L E
Sbjct: 431 RGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSE 490
Query: 1198 KKVDLPDFPIDE 1209
K D+ D ++E
Sbjct: 491 AKQDI-DPKLEE 501
Score = 174 (66.3 bits), Expect = 2.5e-33, Sum P(3) = 2.5e-33
Identities = 38/106 (35%), Positives = 56/106 (52%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ L+F + +T+ L L +H Q +R L+ FR + I++ATDVA+
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651
RG+D+ GI HV +Y P +E Y+HR GRT RA +G SD
Sbjct: 431 RGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSD 476
Score = 127 (49.8 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 29/68 (42%), Positives = 41/68 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L+LAPTRELA+Q+Q GK + ++ CV GG+ Q+R L + I +ATPG L L
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRL-L 257
Query: 1417 KRIDLAKS 1424
+D K+
Sbjct: 258 DMLDSNKT 265
Score = 115 (45.5 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
P +++ + Q GF+ PT IQ P A+ R D+VG + TGSGKTL++ +P + I
Sbjct: 130 PNYVLKEVKQLGFEAPTPIQQQAWPMAMSGR-DMVGISATGSGKTLSYCLPAIVHI 184
Score = 115 (45.5 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
P +++ + Q GF+ PT IQ P A+ R D+VG + TGSGKTL++ +P + I
Sbjct: 130 PNYVLKEVKQLGFEAPTPIQQQAWPMAMSGR-DMVGISATGSGKTLSYCLPAIVHI 184
Score = 57 (25.1 bits), Expect = 3.2e-22, Sum P(3) = 3.2e-22
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EK 1277
ID+ K I ++ + ++++HR GRT RA +G SD ++ + L E
Sbjct: 433 IDV-KGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEA 491
Query: 1278 KVDLPDFPIDE 1288
K D+ D ++E
Sbjct: 492 KQDI-DPKLEE 501
Score = 56 (24.8 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 358 KNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
K L RVT + + M++ G P+++ I+D++ RQT +FSAT
Sbjct: 264 KTNLRRVTYLVLDEADR-MLDMGFEPQIRKIVDQIR-----PDRQTVMFSAT 309
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 204 (76.9 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 47/122 (38%), Positives = 76/122 (62%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYT-P-VKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
AL+LAPTRELA Q+Q+ + D G P ++ C+ GG S Q R L++ +++ATPGR
Sbjct: 313 ALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGR 372
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L +F++ + T L + YLV+DE DRM++ G P+++ I++++ RQ ++S
Sbjct: 373 LIDFLENRN---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR-----PDRQVVMWS 424
Query: 997 AT 998
AT
Sbjct: 425 AT 426
Score = 204 (76.9 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 49/129 (37%), Positives = 77/129 (59%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYT-P-VKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
AL+LAPTRELA Q+Q+ + D G P ++ C+ GG S Q R L++ +++ATPGR
Sbjct: 313 ALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGR 372
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-----DR-VTMTETSQPR 373
L +F++ + T L + YLV+DE DRM++ G P+++ I+ DR V M + P+
Sbjct: 373 LIDFLENRN---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPK 429
Query: 374 QTMIESGHF 382
+ +G F
Sbjct: 430 EVQALAGDF 438
Score = 179 (68.1 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 39/125 (31%), Positives = 65/125 (52%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+ +VF + V+ + Q++ + +H Q +R L FR+ ++IL+ATDVA+
Sbjct: 493 KIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVAS 552
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLD+ +++VI+Y P +SE Y+HR GRT R G D ++ + LE+
Sbjct: 553 RGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEE 612
Query: 1199 KVDLP 1203
P
Sbjct: 613 AGQTP 617
Score = 174 (66.3 bits), Expect = 4.2e-34, Sum P(3) = 4.2e-34
Identities = 36/106 (33%), Positives = 58/106 (54%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ +VF + V+ + Q++ + +H Q +R L FR+ ++IL+ATDVA+
Sbjct: 493 KIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVAS 552
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651
RGLD+ +++VI+Y P +SE Y+HR GRT R G D
Sbjct: 553 RGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPD 598
Score = 140 (54.3 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 136 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 195
LE+ S NE + + + + ++P +I + ++GF PT IQS P AL R D+VG
Sbjct: 223 LEITVSGNE-LPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGR-DLVGI 280
Query: 196 AETGSGKTLAFGIPILTGIVNK 217
A+TGSGKTLA+ +P + I N+
Sbjct: 281 AQTGSGKTLAYMLPAIVHIGNQ 302
Score = 140 (54.3 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 753 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 812
LE+ S NE + + + + ++P +I + ++GF PT IQS P AL R D+VG
Sbjct: 223 LEITVSGNE-LPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGR-DLVGI 280
Query: 813 AETGSGKTLAFGIPILTGIVNK 834
A+TGSGKTLA+ +P + I N+
Sbjct: 281 AQTGSGKTLAYMLPAIVHIGNQ 302
Score = 121 (47.7 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 43/143 (30%), Positives = 72/143 (50%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYT-P-VKVACVVGGMSTEKQLRILNKCPHILVATPGA 1413
AL+LAPTRELA Q+Q+ + D G P ++ C+ GG S Q R L++ +++ATPG
Sbjct: 313 ALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGR 372
Query: 1414 LSLKRIDLAKSIEYLESKIKKNRPDNWL--EKAAK--DMXXXXXXENLIQPKANSRENAL 1469
L I++LE++ + +L ++A + DM +I+ R+ +
Sbjct: 373 L----------IDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVM 422
Query: 1470 MSKALVSKRKELQSLLGKSVQSY 1492
S + KE+Q+L G + Y
Sbjct: 423 WS---ATWPKEVQALAGDFLNDY 442
Score = 60 (26.2 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 1223 KSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1282
+ ++Y+ + N +N++HR GRT R G D ++ + LE+ P
Sbjct: 558 EDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEEAGQTP 617
Score = 44 (20.5 bits), Expect = 5.4e-18, Sum P(3) = 5.4e-18
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 340 LVIDETDRMIESGHFPELKNI-LDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS 398
++I R+I+ F E +N L R T + + M++ G P+++ I++++
Sbjct: 365 VIIATPGRLID---FLENRNTNLQRCTYLVLDEADR-MLDMGFEPQIRKIIEQIR----- 415
Query: 399 QPRQTFVFSAT 409
RQ ++SAT
Sbjct: 416 PDRQVVMWSAT 426
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 212 (79.7 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 51/119 (42%), Positives = 71/119 (59%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L PTRELA QVQ +D +K+ C+ GG S Q R L + I+VATPGRL +
Sbjct: 206 LVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLD 265
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F+ G T + K +YLV+DE DRM++ G P++K I+ ++ RQT +FSAT
Sbjct: 266 FLDNG---TTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIR-----PDRQTLMFSAT 316
Score = 203 (76.5 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 49/122 (40%), Positives = 72/122 (59%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L PTRELA QVQ +D +K+ C+ GG S Q R L + I+VATPGRL +
Sbjct: 206 LVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLD 265
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F+ G T + K +YLV+DE DRM++ G P++K I+ ++ RQT++ S +
Sbjct: 266 FLDNG---TTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIR-----PDRQTLMFSATW 317
Query: 383 PE 384
P+
Sbjct: 318 PK 319
Score = 183 (69.5 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 50/156 (32%), Positives = 77/156 (49%)
Query: 490 RTLCEEIQD---LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 546
R L + Q LN+ S ++L IT+ + + K + L + + Q +
Sbjct: 322 RALASDFQKDAAFLNVGS---LELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECK 378
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
T++F + LT+ + L +H NQ +R L F+ I+LATDVAAR
Sbjct: 379 TIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAAR 438
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
GLD+ I+ VI+Y P SE Y+HR GRT R++ +G
Sbjct: 439 GLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKG 474
Score = 181 (68.8 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 47/143 (32%), Positives = 73/143 (51%)
Query: 1033 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKR 1092
LN+ S ++L IT+ + + K + L + + Q +T++F +
Sbjct: 335 LNVGS---LELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADE 391
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152
LT+ + L +H NQ +R L F+ I+LATDVAARGLD+ I+ VI+Y
Sbjct: 392 LTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINY 451
Query: 1153 HVPRTSEIYIHRSGRTARANNEG 1175
P SE Y+HR GRT R++ +G
Sbjct: 452 DYPNNSEDYVHRIGRTGRSDKKG 474
Score = 117 (46.2 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+P I LY K F+ PT IQS+ P A+ R DI+ A+TGSGKTLAF +P L I +
Sbjct: 137 LPGQIHELLYGK-FQKPTVIQSISWPIAMSGR-DIISIAKTGSGKTLAFMLPALVHITKQ 194
Score = 117 (46.2 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+P I LY K F+ PT IQS+ P A+ R DI+ A+TGSGKTLAF +P L I +
Sbjct: 137 LPGQIHELLYGK-FQKPTVIQSISWPIAMSGR-DIISIAKTGSGKTLAFMLPALVHITKQ 194
Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA QVQ +D +K+ C+ GG S Q R L + I+VATPG L
Sbjct: 206 LVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRL 263
Score = 52 (23.4 bits), Expect = 4.3e-21, Sum P(3) = 4.3e-21
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 1235 NRPDNWLHRSGRTARANNEG 1254
N ++++HR GRT R++ +G
Sbjct: 455 NNSEDYVHRIGRTGRSDKKG 474
Score = 50 (22.7 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P++K I+ ++ RQT +FSAT
Sbjct: 288 MLDMGFEPQIKKIIGQIR-----PDRQTLMFSAT 316
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 221 (82.9 bits), Expect = 2.1e-34, Sum P(3) = 2.1e-34
Identities = 55/171 (32%), Positives = 84/171 (49%)
Query: 1046 KIGITKTLTESKILC--KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 1103
++G T K+L D+K + L G TL+F + +LT L M
Sbjct: 366 RVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFR 425
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
+H Q +R + L FR ++L+AT VAARGLDIP + HVI+Y +P + Y+H
Sbjct: 426 ATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVH 485
Query: 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDFPIDESVLS 1213
R GRT RA N GL S+ + + L E ++P F + ++++S
Sbjct: 486 RIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEVPSF-LKDAMMS 535
Score = 216 (81.1 bits), Expect = 2.5e-33, Sum P(3) = 2.5e-33
Identities = 50/141 (35%), Positives = 70/141 (49%)
Query: 513 KIGITKTLTESKILC--KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
++G T K+L D+K + L G TL+F + +LT L M
Sbjct: 366 RVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFR 425
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+H Q +R + L FR ++L+AT VAARGLDIP + HVI+Y +P + Y+H
Sbjct: 426 ATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVH 485
Query: 631 RSGRTARANNEGLTVVLIESD 651
R GRT RA N GL S+
Sbjct: 486 RIGRTGRAGNTGLATAFFNSE 506
Score = 208 (78.3 bits), Expect = 2.1e-34, Sum P(3) = 2.1e-34
Identities = 56/131 (42%), Positives = 81/131 (61%)
Query: 874 RNKLY--ALILAPTRELAIQVQNHILDAGKYTP---VKVACVV-GGMSTEKQLRILNKCP 927
+ K Y A+I+APTRELA Q+ + +A K+T VK ACVV GG QLR + +
Sbjct: 221 QRKAYPTAVIMAPTRELATQIFD---EAKKFTYRSWVK-ACVVYGGSPIGNQLREIERGC 276
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
+LVATPGRL + ++ G L + YLV+DE DRM++ G P++++I++ MT
Sbjct: 277 DLLVATPGRLNDLLERGKISLAN---VKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVG 333
Query: 988 QPRQTFVFSAT 998
+ RQT +FSAT
Sbjct: 334 E-RQTLMFSAT 343
Score = 203 (76.5 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
Identities = 55/133 (41%), Positives = 81/133 (60%)
Query: 257 RNKLY--ALILAPTRELAIQVQNHILDAGKYTP---VKVACVV-GGMSTEKQLRILNKCP 310
+ K Y A+I+APTRELA Q+ + +A K+T VK ACVV GG QLR + +
Sbjct: 221 QRKAYPTAVIMAPTRELATQIFD---EAKKFTYRSWVK-ACVVYGGSPIGNQLREIERGC 276
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
+LVATPGRL + ++ G L + YLV+DE DRM++ G P++++I++ MT
Sbjct: 277 DLLVATPGRLNDLLERGKISLAN---VKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVG 333
Query: 371 QPRQTMIESGHFP 383
+ RQT++ S FP
Sbjct: 334 E-RQTLMFSATFP 345
Score = 108 (43.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVV-GGMSTEKQLRILNKCPHILVATP 1411
A+I+APTRELA Q+ + +A K+T VK ACVV GG QLR + + +LVATP
Sbjct: 228 AVIMAPTRELATQIFD---EAKKFTYRSWVK-ACVVYGGSPIGNQLREIERGCDLLVATP 283
Query: 1412 GALS--LKR--IDLAKSIEYL 1428
G L+ L+R I LA +++YL
Sbjct: 284 GRLNDLLERGKISLA-NVKYL 303
Score = 82 (33.9 bits), Expect = 2.1e-34, Sum P(3) = 2.1e-34
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
N + + VD S +D+ + E+ + ++ + F PT +Q +P R D
Sbjct: 124 NYDDIPVDASG-KDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGR-D 181
Query: 192 IVGAAETGSGKTLAFGIPILT 212
++ A+TGSGKT F P+L+
Sbjct: 182 LMACAQTGSGKTGGFLFPVLS 202
Score = 82 (33.9 bits), Expect = 2.1e-34, Sum P(3) = 2.1e-34
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
N + + VD S +D+ + E+ + ++ + F PT +Q +P R D
Sbjct: 124 NYDDIPVDASG-KDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGR-D 181
Query: 809 IVGAAETGSGKTLAFGIPILT 829
++ A+TGSGKT F P+L+
Sbjct: 182 LMACAQTGSGKTGGFLFPVLS 202
Score = 72 (30.4 bits), Expect = 6.4e-19, Sum P(3) = 6.4e-19
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDFPIDESVLS 1292
D+++HR GRT RA N GL S+ + + L E ++P F + ++++S
Sbjct: 481 DDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEVPSF-LKDAMMS 535
Score = 64 (27.6 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P++++I++ MT + RQT +FSAT
Sbjct: 311 MLDMGFEPQIRHIVEDCDMTPVGE-RQTLMFSAT 343
Score = 38 (18.4 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 1250 ANNEGLTLVLIES 1262
A+ +GLTL+ +E+
Sbjct: 396 ASTDGLTLIFVET 408
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 193 (73.0 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 41/98 (41%), Positives = 60/98 (61%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R LVF +RL + L + +H + Q +R ++L F++ + +L+ATDVAA
Sbjct: 368 RVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAA 427
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
RGLDIP +E VI+Y P T+E Y+HR GRT RA +G+
Sbjct: 428 RGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGV 465
Score = 193 (73.0 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 41/98 (41%), Positives = 60/98 (61%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
R LVF +RL + L + +H + Q +R ++L F++ + +L+ATDVAA
Sbjct: 368 RVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAA 427
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
RGLDIP +E VI+Y P T+E Y+HR GRT RA +G+
Sbjct: 428 RGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGV 465
Score = 184 (69.8 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 43/119 (36%), Positives = 72/119 (60%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L+PTRELA+Q+ + + +AG+ +K CV GG S Q+ + I++ TPGRL +
Sbjct: 195 LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRD 254
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
I+ L++ ++++V+DE DRM++ G F E R ++ T++ RQ +FSAT
Sbjct: 255 LIESNVLRLSD---VSFVVLDEADRMLDMG-FEEPV----RFILSNTNKVRQMVMFSAT 305
Score = 174 (66.3 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 41/121 (33%), Positives = 72/121 (59%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L+PTRELA+Q+ + + +AG+ +K CV GG S Q+ + I++ TPGRL +
Sbjct: 195 LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRD 254
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
I+ L++ ++++V+DE DRM++ G F E R ++ T++ RQ ++ S +
Sbjct: 255 LIESNVLRLSD---VSFVVLDEADRMLDMG-FEEPV----RFILSNTNKVRQMVMFSATW 306
Query: 383 P 383
P
Sbjct: 307 P 307
Score = 133 (51.9 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
E + + + + N+PE ++ K F+ P+ IQS P LL +D++G A+TGSGKT
Sbjct: 109 EAKYAALKTFAESNLPENVLDCC--KTFEKPSPIQSHTWPF-LLDGRDLIGIAKTGSGKT 165
Query: 204 LAFGIPILTGIVNK 217
LAFGIP + ++ K
Sbjct: 166 LAFGIPAIMHVLKK 179
Score = 133 (51.9 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
E + + + + N+PE ++ K F+ P+ IQS P LL +D++G A+TGSGKT
Sbjct: 109 EAKYAALKTFAESNLPENVLDCC--KTFEKPSPIQSHTWPF-LLDGRDLIGIAKTGSGKT 165
Query: 821 LAFGIPILTGIVNK 834
LAFGIP + ++ K
Sbjct: 166 LAFGIPAIMHVLKK 179
Score = 114 (45.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L+PTRELA+Q+ + + +AG+ +K CV GG S Q+ + I++ TPG L
Sbjct: 195 LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRL 252
Score = 50 (22.7 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 1238 DNWLHRSGRTARANNEGL 1255
++++HR GRT RA +G+
Sbjct: 448 EDYVHRIGRTGRAGKKGV 465
Score = 39 (18.8 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 391 RVTMTETSQPRQTFVFSAT 409
R ++ T++ RQ +FSAT
Sbjct: 287 RFILSNTNKVRQMVMFSAT 305
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 235 (87.8 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 62/198 (31%), Positives = 104/198 (52%)
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQH--PGRTLVFCNSISSVKRLTQLL 1097
V+ +K+ I TL S + K++YL + L+ ++F N ++ + L ++L
Sbjct: 214 VETVDKVAIPSTLQISYVFVPSYVKEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRML 273
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
L LH+ M Q +R +L RF+ IL+ATDVA+RGLDIP +E VI++ +P
Sbjct: 274 RKLDFRVASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPAD 333
Query: 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217
+ +IHR GRTARA +G + +I +I + + KK++L + D++V+
Sbjct: 334 PDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEERINKKMELLEDVNDDNVIKESLS 393
Query: 1218 RIDLAKSIEYLESKIKKN 1235
+AK +E K+N
Sbjct: 394 ATSVAKRESLMEMD-KEN 410
Score = 220 (82.5 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 49/125 (39%), Positives = 73/125 (58%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
++ LIL PTRELA+Q+ G +KVA VVGG +Q L + PH ++ATPGR
Sbjct: 70 IFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKPHFVIATPGR 129
Query: 937 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L + I G ++ L ++ YLV+DE DR++ + +L+ D + TS RQT +F
Sbjct: 130 LADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFD---VLPTSDKRQTLLF 186
Query: 996 SATLT 1000
+AT+T
Sbjct: 187 TATIT 191
Score = 219 (82.2 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 53/149 (35%), Positives = 83/149 (55%)
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQH--PGRTLVFCNSISSVKRLTQLL 564
V+ +K+ I TL S + K++YL + L+ ++F N ++ + L ++L
Sbjct: 214 VETVDKVAIPSTLQISYVFVPSYVKEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRML 273
Query: 565 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624
L LH+ M Q +R +L RF+ IL+ATDVA+RGLDIP +E VI++ +P
Sbjct: 274 RKLDFRVASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPAD 333
Query: 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653
+ +IHR GRTARA +G V +I +I
Sbjct: 334 PDDFIHRVGRTARAGRKGDAVSIIGEKDI 362
Score = 200 (75.5 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 45/119 (37%), Positives = 68/119 (57%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
++ LIL PTRELA+Q+ G +KVA VVGG +Q L + PH ++ATPGR
Sbjct: 70 IFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKPHFVIATPGR 129
Query: 320 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
L + I G ++ L ++ YLV+DE DR++ + +L+ D + TS RQT++
Sbjct: 130 LADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFD---VLPTSDKRQTLL 185
Score = 126 (49.4 bits), Expect = 0.00029, P = 0.00029
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
LIL PTRELA+Q+ G +KVA VVGG +Q L + PH ++ATPG L+
Sbjct: 73 LILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKPHFVIATPGRLA 131
Score = 112 (44.5 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 41/125 (32%), Positives = 58/125 (46%)
Query: 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT-------GIVNKLENPTXXX 225
TPT IQS +P A+L D +G A+TGSGKT+AF P+LT GI + PT
Sbjct: 23 TPTAIQSACIP-AILKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLILTPTREL 81
Query: 226 XXXXXXXXXXXXXXXXXXXXSA-NTTEFVKKT---RNKLYALILAPTRELAIQVQNHILD 281
+FV++T + K + +I P R LA +HIL+
Sbjct: 82 ALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKPHFVIATPGR-LA----DHILN 136
Query: 282 AGKYT 286
+G+ T
Sbjct: 137 SGEET 141
Score = 112 (44.5 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 41/125 (32%), Positives = 58/125 (46%)
Query: 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT-------GIVNKLENPTXXX 842
TPT IQS +P A+L D +G A+TGSGKT+AF P+LT GI + PT
Sbjct: 23 TPTAIQSACIP-AILKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLILTPTREL 81
Query: 843 XXXXXXXXXXXXXXXXXXXXSA-NTTEFVKKT---RNKLYALILAPTRELAIQVQNHILD 898
+FV++T + K + +I P R LA +HIL+
Sbjct: 82 ALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKPHFVIATPGR-LA----DHILN 136
Query: 899 AGKYT 903
+G+ T
Sbjct: 137 SGEET 141
Score = 89 (36.4 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 26/86 (30%), Positives = 50/86 (58%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
PD+++HR GRTARA +G + +I +I + + KK++L + D++V IK+
Sbjct: 334 PDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEERINKKMELLEDVNDDNV---IKE 390
Query: 1297 RIDLAKSIEYLESKIKKNRPDNWLEK 1322
+ A S+ ES ++ ++ +N+ E+
Sbjct: 391 SLS-ATSVAKRESLMEMDK-ENFGER 414
Score = 47 (21.6 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 397 TSQPRQTFVFSATLT 411
TS RQT +F+AT+T
Sbjct: 177 TSDKRQTLLFTATIT 191
Score = 39 (18.8 bits), Expect = 4.7e-17, Sum P(4) = 4.7e-17
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYL 480
V+ +K+ I TL S + K++YL
Sbjct: 214 VETVDKVAIPSTLQISYVFVPSYVKEAYL 242
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 330 (121.2 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 95/327 (29%), Positives = 153/327 (46%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 936
YA+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPGR
Sbjct: 469 YAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGR 527
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + L+ + Y+V+DE DRMI+ G P+++ IL+ M ++Q T
Sbjct: 528 LIDVLENRYLVLS---RCTYVVLDEADRMIDMGFEPDVQKILEH--MPVSNQKPDTDEAE 582
Query: 997 ATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
P+++RL ++ P +V + G E
Sbjct: 583 DPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSY-LRRPAVVYIGSA-GKPHERVEQ 640
Query: 1057 KI-LCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
K+ L EK L + Q ++F N L + L + + LH Q
Sbjct: 641 KVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQE 700
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR L + IL+ATDVA RG+DI + V++Y + + E YIHR GRT RA
Sbjct: 701 QREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKS 760
Query: 1175 GLTLVLIESDEIPLYIKMFNS-LEKKV 1200
G+ + + ++ ++ ++ + LE V
Sbjct: 761 GVAITFLTKEDSAVFYELKQAILESPV 787
Score = 200 (75.5 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 54/151 (35%), Positives = 86/151 (56%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 319
YA+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPGR
Sbjct: 469 YAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGR 527
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ + L+ + Y+V+DE DRMI+ G P+++ IL+ M ++Q T +
Sbjct: 528 LIDVLENRYLVLS---RCTYVVLDEADRMIDMGFEPDVQKILEH--MPVSNQKPDT--DE 580
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATL 410
PE +L + RQT +F+AT+
Sbjct: 581 AEDPE--KMLANFESGKHKY-RQTVMFTATM 608
Score = 162 (62.1 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 44/153 (28%), Positives = 68/153 (44%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKI-LCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKR 559
++ P +V + G E K+ L EK L + Q ++F N
Sbjct: 620 LRRPAVVYIGSA-GKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDV 678
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L + L + + LH Q QR L + IL+ATDVA RG+DI + V++Y
Sbjct: 679 LAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNY 738
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+ + E YIHR GRT RA G+ + + ++
Sbjct: 739 DMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 771
Score = 133 (51.9 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W ++P I+ + + G+K PT IQ +P L R DI+G AETGSGKT AF IP+L
Sbjct: 392 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIPLLV 450
Query: 213 GI 214
I
Sbjct: 451 WI 452
Score = 133 (51.9 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W ++P I+ + + G+K PT IQ +P L R DI+G AETGSGKT AF IP+L
Sbjct: 392 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIPLLV 450
Query: 830 GI 831
I
Sbjct: 451 WI 452
Score = 120 (47.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGAL 1414
A+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPG L
Sbjct: 470 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGRL 528
Score = 63 (27.2 bits), Expect = 5.8e-21, Sum P(4) = 5.8e-21
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 1220 DLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS-LEKK 1278
D++ + Y + KN D ++HR GRT RA G+ + + ++ ++ ++ + LE
Sbjct: 731 DVSMVVNY---DMAKNIED-YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESP 786
Query: 1279 V 1279
V
Sbjct: 787 V 787
Score = 37 (18.1 bits), Expect = 5.8e-21, Sum P(4) = 5.8e-21
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGR 634
P +E + ++ R + +YI +G+
Sbjct: 610 PAVERLARSYLRRPAVVYIGSAGK 633
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 330 (121.2 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 95/327 (29%), Positives = 153/327 (46%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 936
YA+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPGR
Sbjct: 470 YAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGR 528
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + L+ + Y+V+DE DRMI+ G P+++ IL+ M ++Q T
Sbjct: 529 LIDVLENRYLVLS---RCTYVVLDEADRMIDMGFEPDVQKILEH--MPVSNQKPDTDEAE 583
Query: 997 ATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
P+++RL ++ P +V + G E
Sbjct: 584 DPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSY-LRRPAVVYIGSA-GKPHERVEQ 641
Query: 1057 KI-LCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
K+ L EK L + Q ++F N L + L + + LH Q
Sbjct: 642 KVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQE 701
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR L + IL+ATDVA RG+DI + V++Y + + E YIHR GRT RA
Sbjct: 702 QREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKS 761
Query: 1175 GLTLVLIESDEIPLYIKMFNS-LEKKV 1200
G+ + + ++ ++ ++ + LE V
Sbjct: 762 GVAITFLTKEDSAVFYELKQAILESPV 788
Score = 200 (75.5 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 54/151 (35%), Positives = 86/151 (56%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 319
YA+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPGR
Sbjct: 470 YAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGR 528
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ + L+ + Y+V+DE DRMI+ G P+++ IL+ M ++Q T +
Sbjct: 529 LIDVLENRYLVLS---RCTYVVLDEADRMIDMGFEPDVQKILEH--MPVSNQKPDT--DE 581
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATL 410
PE +L + RQT +F+AT+
Sbjct: 582 AEDPE--KMLANFESGKHKY-RQTVMFTATM 609
Score = 162 (62.1 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 44/153 (28%), Positives = 68/153 (44%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKI-LCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKR 559
++ P +V + G E K+ L EK L + Q ++F N
Sbjct: 621 LRRPAVVYIGSA-GKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDV 679
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L + L + + LH Q QR L + IL+ATDVA RG+DI + V++Y
Sbjct: 680 LAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNY 739
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+ + E YIHR GRT RA G+ + + ++
Sbjct: 740 DMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 772
Score = 133 (51.9 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W ++P I+ + + G+K PT IQ +P L R DI+G AETGSGKT AF IP+L
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIPLLV 451
Query: 830 GI 831
I
Sbjct: 452 WI 453
Score = 133 (51.9 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W ++P I+ + + G+K PT IQ +P L R DI+G AETGSGKT AF IP+L
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIPLLV 451
Query: 213 GI 214
I
Sbjct: 452 WI 453
Score = 120 (47.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGAL 1414
A+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPG L
Sbjct: 471 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGRL 529
Score = 63 (27.2 bits), Expect = 5.9e-21, Sum P(4) = 5.9e-21
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 1220 DLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS-LEKK 1278
D++ + Y + KN D ++HR GRT RA G+ + + ++ ++ ++ + LE
Sbjct: 732 DVSMVVNY---DMAKNIED-YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESP 787
Query: 1279 V 1279
V
Sbjct: 788 V 788
Score = 37 (18.1 bits), Expect = 5.9e-21, Sum P(4) = 5.9e-21
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGR 634
P +E + ++ R + +YI +G+
Sbjct: 611 PAVERLARSYLRRPAVVYIGSAGK 634
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 330 (121.2 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 95/327 (29%), Positives = 153/327 (46%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 936
YA+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPGR
Sbjct: 470 YAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGR 528
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + L+ + Y+V+DE DRMI+ G P+++ IL+ M ++Q T
Sbjct: 529 LIDVLENRYLVLS---RCTYVVLDEADRMIDMGFEPDVQKILEH--MPVSNQKPDTDEAE 583
Query: 997 ATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
P+++RL ++ P +V + G E
Sbjct: 584 DPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSY-LRRPAVVYIGSA-GKPHERVEQ 641
Query: 1057 KI-LCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
K+ L EK L + Q ++F N L + L + + LH Q
Sbjct: 642 KVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQE 701
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR L + IL+ATDVA RG+DI + V++Y + + E YIHR GRT RA
Sbjct: 702 QREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKS 761
Query: 1175 GLTLVLIESDEIPLYIKMFNS-LEKKV 1200
G+ + + ++ ++ ++ + LE V
Sbjct: 762 GVAITFLTKEDSAVFYELKQAILESPV 788
Score = 200 (75.5 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 54/151 (35%), Positives = 86/151 (56%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 319
YA+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPGR
Sbjct: 470 YAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGR 528
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ + L+ + Y+V+DE DRMI+ G P+++ IL+ M ++Q T +
Sbjct: 529 LIDVLENRYLVLS---RCTYVVLDEADRMIDMGFEPDVQKILEH--MPVSNQKPDT--DE 581
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATL 410
PE +L + RQT +F+AT+
Sbjct: 582 AEDPE--KMLANFESGKHKY-RQTVMFTATM 609
Score = 162 (62.1 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 44/153 (28%), Positives = 68/153 (44%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKI-LCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKR 559
++ P +V + G E K+ L EK L + Q ++F N
Sbjct: 621 LRRPAVVYIGSA-GKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDV 679
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L + L + + LH Q QR L + IL+ATDVA RG+DI + V++Y
Sbjct: 680 LAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNY 739
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+ + E YIHR GRT RA G+ + + ++
Sbjct: 740 DMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 772
Score = 133 (51.9 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W ++P I+ + + G+K PT IQ +P L R DI+G AETGSGKT AF IP+L
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIPLLV 451
Query: 830 GI 831
I
Sbjct: 452 WI 453
Score = 133 (51.9 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W ++P I+ + + G+K PT IQ +P L R DI+G AETGSGKT AF IP+L
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIPLLV 451
Query: 213 GI 214
I
Sbjct: 452 WI 453
Score = 120 (47.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGAL 1414
A+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPG L
Sbjct: 471 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGRL 529
Score = 63 (27.2 bits), Expect = 5.9e-21, Sum P(4) = 5.9e-21
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 1220 DLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS-LEKK 1278
D++ + Y + KN D ++HR GRT RA G+ + + ++ ++ ++ + LE
Sbjct: 732 DVSMVVNY---DMAKNIED-YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESP 787
Query: 1279 V 1279
V
Sbjct: 788 V 788
Score = 37 (18.1 bits), Expect = 5.9e-21, Sum P(4) = 5.9e-21
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGR 634
P +E + ++ R + +YI +G+
Sbjct: 611 PAVERLARSYLRRPAVVYIGSAGK 634
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 330 (121.2 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 95/327 (29%), Positives = 153/327 (46%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 936
YA+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPGR
Sbjct: 470 YAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGR 528
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + L+ + Y+V+DE DRMI+ G P+++ IL+ M ++Q T
Sbjct: 529 LIDVLENRYLVLS---RCTYVVLDEADRMIDMGFEPDVQKILEH--MPVSNQKPDTDEAE 583
Query: 997 ATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
P+++RL ++ P +V + G E
Sbjct: 584 DPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSY-LRRPAVVYIGSA-GKPHERVEQ 641
Query: 1057 KI-LCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
K+ L EK L + Q ++F N L + L + + LH Q
Sbjct: 642 KVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQE 701
Query: 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 1174
QR L + IL+ATDVA RG+DI + V++Y + + E YIHR GRT RA
Sbjct: 702 QREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKS 761
Query: 1175 GLTLVLIESDEIPLYIKMFNS-LEKKV 1200
G+ + + ++ ++ ++ + LE V
Sbjct: 762 GVAITFLTKEDSAVFYELKQAILESPV 788
Score = 200 (75.5 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 54/151 (35%), Positives = 86/151 (56%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 319
YA+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPGR
Sbjct: 470 YAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGR 528
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ + L+ + Y+V+DE DRMI+ G P+++ IL+ M ++Q T +
Sbjct: 529 LIDVLENRYLVLS---RCTYVVLDEADRMIDMGFEPDVQKILEH--MPVSNQKPDT--DE 581
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATL 410
PE +L + RQT +F+AT+
Sbjct: 582 AEDPE--KMLANFESGKHKY-RQTVMFTATM 609
Score = 162 (62.1 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 44/153 (28%), Positives = 68/153 (44%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKI-LCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKR 559
++ P +V + G E K+ L EK L + Q ++F N
Sbjct: 621 LRRPAVVYIGSA-GKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDV 679
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619
L + L + + LH Q QR L + IL+ATDVA RG+DI + V++Y
Sbjct: 680 LAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNY 739
Query: 620 HVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+ + E YIHR GRT RA G+ + + ++
Sbjct: 740 DMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 772
Score = 133 (51.9 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W ++P I+ + + G+K PT IQ +P L R DI+G AETGSGKT AF IP+L
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIPLLV 451
Query: 830 GI 831
I
Sbjct: 452 WI 453
Score = 133 (51.9 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W ++P I+ + + G+K PT IQ +P L R DI+G AETGSGKT AF IP+L
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIPLLV 451
Query: 213 GI 214
I
Sbjct: 452 WI 453
Score = 120 (47.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGAL 1414
A+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPG L
Sbjct: 471 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGRL 529
Score = 63 (27.2 bits), Expect = 5.9e-21, Sum P(4) = 5.9e-21
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 1220 DLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS-LEKK 1278
D++ + Y + KN D ++HR GRT RA G+ + + ++ ++ ++ + LE
Sbjct: 732 DVSMVVNY---DMAKNIED-YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESP 787
Query: 1279 V 1279
V
Sbjct: 788 V 788
Score = 37 (18.1 bits), Expect = 5.9e-21, Sum P(4) = 5.9e-21
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGR 634
P +E + ++ R + +YI +G+
Sbjct: 611 PAVERLARSYLRRPAVVYIGSAGK 634
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 188 (71.2 bits), Expect = 2.9e-34, Sum P(3) = 2.9e-34
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+ L+FC + + + L + LH+ Q R + L F+D +L+ATDVAA
Sbjct: 247 KVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAA 306
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
RG+D+ I VI+Y++P YIHR GRTARA G+ + ++I + NS+
Sbjct: 307 RGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNIENSI 364
Score = 188 (71.2 bits), Expect = 5.9e-34, Sum P(3) = 5.9e-34
Identities = 52/168 (30%), Positives = 83/168 (49%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY--LYYFILQHPG- 545
T+ EI+ L + P + +T + +T L + H +K + L + IL
Sbjct: 189 TMPAEIEILAEAILTDPTKIQITAET-VTIDLVNQSVY--HLDKSNKVPLLFNILTKADY 245
Query: 546 -RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+ L+FC + + + L + LH+ Q R + L F+D +L+ATDVA
Sbjct: 246 EKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVA 305
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL-IESD 651
ARG+D+ I VI+Y++P YIHR GRTARA G+ + +E+D
Sbjct: 306 ARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVEND 353
Score = 177 (67.4 bits), Expect = 2.9e-34, Sum P(3) = 2.9e-34
Identities = 44/121 (36%), Positives = 68/121 (56%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
+LIL PTRELA Q+ +I D +K V GG+ + Q+ + ILVATPGRL
Sbjct: 78 SLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILVATPGRLL 137
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ I+ G + L V+DE D M++ G F ++++I+ ++ + RQT +FSAT
Sbjct: 138 DLIETGDINFKAL---EVFVLDEADTMLDMGFFKDVQSIISKLPKS-----RQTLLFSAT 189
Query: 999 L 999
+
Sbjct: 190 M 190
Score = 174 (66.3 bits), Expect = 5.9e-34, Sum P(3) = 5.9e-34
Identities = 48/150 (32%), Positives = 78/150 (52%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
+LIL PTRELA Q+ +I D +K V GG+ + Q+ + ILVATPGRL
Sbjct: 78 SLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILVATPGRLL 137
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ I+ G + L V+DE D M++ G F ++++I+ ++ + RQT++ S
Sbjct: 138 DLIETGDINFKAL---EVFVLDEADTMLDMGFFKDVQSIISKLPKS-----RQTLLFSAT 189
Query: 382 FPELKNILDRVTMTETSQPRQTFVFSATLT 411
P IL +T+ P + + + T+T
Sbjct: 190 MPAEIEILAEAILTD---PTKIQITAETVT 216
Score = 136 (52.9 bits), Expect = 2.9e-34, Sum P(3) = 2.9e-34
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
M+E+ F++ E+II + KG+K PT IQ +P AL+ D++G A+TG+GKT AF +P
Sbjct: 1 MSEFKAFSLLESIIDRVNLKGYKQPTPIQKECIP-ALINGNDLLGIAQTGTGKTAAFSLP 59
Query: 210 ILTGIV-NKLE 219
I+ NK++
Sbjct: 60 IINKFGRNKID 70
Score = 136 (52.9 bits), Expect = 2.9e-34, Sum P(3) = 2.9e-34
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
M+E+ F++ E+II + KG+K PT IQ +P AL+ D++G A+TG+GKT AF +P
Sbjct: 1 MSEFKAFSLLESIIDRVNLKGYKQPTPIQKECIP-ALINGNDLLGIAQTGTGKTAAFSLP 59
Query: 827 ILTGIV-NKLE 836
I+ NK++
Sbjct: 60 IINKFGRNKID 70
Score = 103 (41.3 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 38/120 (31%), Positives = 56/120 (46%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+LIL PTRELA Q+ +I D +K V GG+ + Q+ + ILVATPG L
Sbjct: 78 SLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILVATPGRL- 136
Query: 1416 LKRIDLAK-SIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
L I+ + + LE + + D L DM +++I SR+ L S +
Sbjct: 137 LDLIETGDINFKALEVFVL-DEADTML-----DMGFFKDVQSIISKLPKSRQTLLFSATM 190
Score = 71 (30.1 bits), Expect = 5.0e-22, Sum P(3) = 5.0e-22
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1275
P N++HR GRTARA G+ + ++I + NS+
Sbjct: 326 PRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNIENSI 364
Score = 53 (23.7 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407
M E F L++I+DRV + QP T I+ P L N D + + +T + T FS
Sbjct: 1 MSEFKAFSLLESIIDRVNLKGYKQP--TPIQKECIPALINGNDLLGIAQTGTGK-TAAFS 57
Score = 40 (19.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 965 MIESGHFPELKNILDRVTMTETSQP 989
M E F L++I+DRV + QP
Sbjct: 1 MSEFKAFSLLESIIDRVNLKGYKQP 25
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 229 (85.7 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
Identities = 59/169 (34%), Positives = 96/169 (56%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKTLTESKILCKHD---EKDSYLYYFILQ--H 543
T+ E+++DL +++ P V + + L + I + D +++ L I + H
Sbjct: 344 TMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFH 403
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+VF + RL LL +L LH ++ Q+QRL++L +F+++ +L+ATDV
Sbjct: 404 D-HCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDV 462
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
AARGLDI G++ VI++ +P T+E YIHR GRTARA G++V L E
Sbjct: 463 AARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKE 511
Score = 218 (81.8 bits), Expect = 6.5e-34, Sum P(3) = 6.5e-34
Identities = 47/120 (39%), Positives = 74/120 (61%)
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
+VF + RL LL +L LH ++ Q+QRL++L +F+++ +L+ATDVAARG
Sbjct: 407 MVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARG 466
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
LDI G++ VI++ +P T+E YIHR GRTARA G+++ L E + + + E +
Sbjct: 467 LDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIKNAESTI 526
Score = 174 (66.3 bits), Expect = 6.5e-34, Sum P(3) = 6.5e-34
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L PTREL QV ++T + V +GG+ + Q +L + P I++ATPGRL +
Sbjct: 233 LVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLID 292
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
I+ + L I L++DE DRM++ ++K I++ T RQT +FSAT+
Sbjct: 293 HIK--NTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT-----RQTMLFSATM 345
Query: 1000 T 1000
+
Sbjct: 346 S 346
Score = 165 (63.1 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
Identities = 46/143 (32%), Positives = 73/143 (51%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L PTREL QV ++T + V +GG+ + Q +L + P I++ATPGRL +
Sbjct: 233 LVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLID 292
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
I+ + L I L++DE DRM++ ++K I++ T RQTM+ S
Sbjct: 293 HIK--NTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT-----RQTMLFSATM 345
Query: 383 PELKNILDRVTMTETSQPRQTFV 405
E L V++ +P + FV
Sbjct: 346 SEQVKDLAAVSL---DKPIKVFV 365
Score = 120 (47.3 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
Q+ + + N+ ++RA+ G+ PT IQ+ +P ALL R DI G A TG+GKT A+ +
Sbjct: 155 QITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGR-DICGCAATGTGKTAAYML 213
Query: 209 PILTGIVNK-LEN 220
P L ++ + L N
Sbjct: 214 PTLERLLYRPLNN 226
Score = 120 (47.3 bits), Expect = 6.5e-34, Sum P(3) = 6.5e-34
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
Q+ + + N+ ++RA+ G+ PT IQ+ +P ALL R DI G A TG+GKT A+ +
Sbjct: 155 QITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGR-DICGCAATGTGKTAAYML 213
Query: 826 PILTGIVNK-LEN 837
P L ++ + L N
Sbjct: 214 PTLERLLYRPLNN 226
Score = 116 (45.9 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 40/154 (25%), Positives = 74/154 (48%)
Query: 1343 LIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 1402
L++ N + L+L PTREL QV ++T + V +GG+ + Q +L +
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQ 278
Query: 1403 CPHILVATPGALSLKRIDLAKS--IEYLESKIKKNRPDNWLEKA-AKDMXXXXXXENLIQ 1459
P I++ATPG L + I S ++ +E I + D L++ A+ M + +I
Sbjct: 279 NPDIVIATPGRL-IDHIKNTPSFTLDSIEVLIL-DEADRMLDEYFAEQM------KEIIN 330
Query: 1460 PKANSRENALMSKALVSKRKELQSL-LGKSVQSY 1492
+R+ L S + + K+L ++ L K ++ +
Sbjct: 331 SCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVF 364
Score = 68 (29.0 bits), Expect = 3.4e-18, Sum P(3) = 3.4e-18
Identities = 29/119 (24%), Positives = 55/119 (46%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
++++HR GRTARA G++ + + E+K+ + D I ++ S IK R
Sbjct: 485 EHYIHRVGRTARAGRAGIS------------VSLAGEKERKI-VKD--IIKNAESTIKNR 529
Query: 1298 IDLAKSIEYLESKIKKNRPD--NWLEKAAKDMXXXXXXENLIQPNQLLIFESRNLRYSW 1354
I + IE +K+ P+ N L++ + + L + + L+ ++ N R W
Sbjct: 530 IIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQT-NERRGW 587
Score = 42 (19.8 bits), Expect = 5.6e-20, Sum P(4) = 5.6e-20
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 340 LVIDETDRMIESGHFPELKNI-LDRVTMTETSQPRQTMIESGHFPE-LKNILDRVTMTET 397
+VI R+I+ H + LD + + + + + E +F E +K I++ T
Sbjct: 282 IVIATPGRLID--HIKNTPSFTLDSIEVLILDEADRMLDE--YFAEQMKEIINSCCKT-- 335
Query: 398 SQPRQTFVFSATLT 411
RQT +FSAT++
Sbjct: 336 ---RQTMLFSATMS 346
Score = 41 (19.5 bits), Expect = 5.6e-20, Sum P(4) = 5.6e-20
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 744 TYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQK-GFKTP 791
T + K+L V +FV + V FN+ + IR K G + P
Sbjct: 344 TMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREP 392
Score = 41 (19.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 127 TYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQK-GFKTP 174
T + K+L V +FV + V FN+ + IR K G + P
Sbjct: 344 TMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREP 392
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 211 (79.3 bits), Expect = 3.6e-34, Sum P(3) = 3.6e-34
Identities = 60/216 (27%), Positives = 111/216 (51%)
Query: 1025 SIKRLQDLLNIKSPKIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFI--LQHPGRTL 1081
S+ RL +K P IV + T + ++ ++ I+ +EK S++ F+ + + +
Sbjct: 433 SVHRLAQSY-LKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVI 491
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
VF + + L+ L + S LH QR R K L+ F+ IL+ATD+A+RGL
Sbjct: 492 VFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGL 551
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KV 1200
D+ + HV ++ PR E Y+HR GRT RA G+++ + ++ + ++ N LE+
Sbjct: 552 DVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILERANQ 611
Query: 1201 DLPDFPID--ESVLSLIKKRIDLAKSIEYLESKIKK 1234
+P+ + E + +KR ++ + +E + + KK
Sbjct: 612 SIPEELVSMAERFKAHQQKR-EMERKMERPQGRPKK 646
Score = 201 (75.8 bits), Expect = 3.6e-34, Sum P(3) = 3.6e-34
Identities = 50/132 (37%), Positives = 75/132 (56%)
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
+K RN+ L+L PTRELA+QV+ Y ++ CV GG + ++Q+ L K I
Sbjct: 310 LKGQRNRPGMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELKKGVDI 368
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
++ATPGRL + +Q+ +F L I YLV+DE D+M++ G P++ IL +
Sbjct: 369 IIATPGRLND-LQMSNF--VNLKNITYLVLDEADKMLDMGFEPQIMKIL-----LDVRPD 420
Query: 990 RQTFVFSATLTH 1001
RQT + SAT H
Sbjct: 421 RQTVMTSATWPH 432
Score = 199 (75.1 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 47/154 (30%), Positives = 82/154 (53%)
Query: 502 IKSPKIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFI--LQHPGRTLVFCNSISSVK 558
+K P IV + T + ++ ++ I+ +EK S++ F+ + + +VF + +
Sbjct: 442 LKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKAVAD 501
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
L+ L + S LH QR R K L+ F+ IL+ATD+A+RGLD+ + HV +
Sbjct: 502 HLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYN 561
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+ PR E Y+HR GRT RA G+++ + ++
Sbjct: 562 FDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRND 595
Score = 198 (74.8 bits), Expect = 7.3e-34, Sum P(3) = 7.3e-34
Identities = 51/153 (33%), Positives = 84/153 (54%)
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
+K RN+ L+L PTRELA+QV+ Y ++ CV GG + ++Q+ L K I
Sbjct: 310 LKGQRNRPGMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELKKGVDI 368
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
++ATPGRL + +Q+ +F L I YLV+DE D+M++ G P++ IL +
Sbjct: 369 IIATPGRLND-LQMSNF--VNLKNITYLVLDEADKMLDMGFEPQIMKIL-----LDVRPD 420
Query: 373 RQTMIESGHFPELKNILDRVTMTETSQPRQTFV 405
RQT++ S +P + + R+ + +P +V
Sbjct: 421 RQTVMTSATWP---HSVHRLAQSYLKEPMIVYV 450
Score = 114 (45.2 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS- 1415
L+L PTRELA+QV+ Y ++ CV GG + ++Q+ L K I++ATPG L+
Sbjct: 320 LVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLND 378
Query: 1416 LKRIDLA--KSIEYL 1428
L+ + K+I YL
Sbjct: 379 LQMSNFVNLKNITYL 393
Score = 99 (39.9 bits), Expect = 3.6e-34, Sum P(3) = 3.6e-34
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
PE ++ + + GF+ PT IQS P +L D++G A+TG+GKTL + +P G ++ +
Sbjct: 251 PE-VMENIKKAGFQKPTPIQSQAWP-IVLQGIDLIGVAQTGTGKTLCYLMP---GFIHLV 305
Query: 219 ENPT 222
P+
Sbjct: 306 LQPS 309
Score = 99 (39.9 bits), Expect = 3.6e-34, Sum P(3) = 3.6e-34
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
PE ++ + + GF+ PT IQS P +L D++G A+TG+GKTL + +P G ++ +
Sbjct: 251 PE-VMENIKKAGFQKPTPIQSQAWP-IVLQGIDLIGVAQTGTGKTLCYLMP---GFIHLV 305
Query: 836 ENPT 839
P+
Sbjct: 306 LQPS 309
Score = 63 (27.2 bits), Expect = 8.0e-19, Sum P(3) = 8.0e-19
Identities = 18/79 (22%), Positives = 42/79 (53%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPID--ESVLSLI 1294
+ ++HR GRT RA G+++ + ++ + ++ N LE+ +P+ + E +
Sbjct: 569 EEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILERANQSIPEELVSMAERFKAHQ 628
Query: 1295 KKRIDLAKSIEYLESKIKK 1313
+KR ++ + +E + + KK
Sbjct: 629 QKR-EMERKMERPQGRPKK 646
>FB|FBgn0052344 [details] [associations]
symbol:CG32344 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
NextBio:847633 Uniprot:Q8SY39
Length = 827
Score = 207 (77.9 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 50/121 (41%), Positives = 70/121 (57%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
ALIL+PTRELA+Q I + G++ +K V+GG S + Q ++ CP ++VATPGR
Sbjct: 112 ALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGR-- 169
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F+ L +L I Y+V DE DR+ E G +L L R+ + RQT +FSAT
Sbjct: 170 -FLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSS-----RQTVMFSAT 223
Query: 999 L 999
L
Sbjct: 224 L 224
Score = 201 (75.8 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 54/214 (25%), Positives = 110/214 (51%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY---FILQHPGRTLVFCNSISSVK 1091
+ P ++ L + + L + C+ D++ + L +++ +T+VF + V+
Sbjct: 236 LNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPVQSQTVVFAGTQHHVE 295
Query: 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151
++ +LT S +++S++ R N +F ++ S+L+ TDVAARG+DIP ++ V++
Sbjct: 296 LISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARGIDIPSLDFVVN 355
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE------IPLYI-KMFNSLEKKV--DL 1202
H P ++++HR GR ARA G ++ +D+ + L++ + FN + +
Sbjct: 356 LHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFLNRPFNIHDSSALGTI 415
Query: 1203 PDFPIDESVLSL--IKKRIDLAKSIEYLESKIKK 1234
P ++E L++ IKK +A + E+ KK
Sbjct: 416 PQDLLEEEHLTVTDIKKSHHIAGVLRTSENAYKK 449
Score = 197 (74.4 bits), Expect = 4.3e-33, Sum P(3) = 4.3e-33
Identities = 48/124 (38%), Positives = 70/124 (56%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
ALIL+PTRELA+Q I + G++ +K V+GG S + Q ++ CP ++VATPGR
Sbjct: 112 ALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGR-- 169
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
F+ L +L I Y+V DE DR+ E G +L L R+ + RQT++ S
Sbjct: 170 -FLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSS-----RQTVMFSAT 223
Query: 382 FPEL 385
P+L
Sbjct: 224 LPKL 227
Score = 196 (74.1 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 41/154 (26%), Positives = 84/154 (54%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY---FILQHPGRTLVFCNSISSVK 558
+ P ++ L + + L + C+ D++ + L +++ +T+VF + V+
Sbjct: 236 LNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPVQSQTVVFAGTQHHVE 295
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
++ +LT S +++S++ R N +F ++ S+L+ TDVAARG+DIP ++ V++
Sbjct: 296 LISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARGIDIPSLDFVVN 355
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
H P ++++HR GR ARA G ++ +D+
Sbjct: 356 LHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDD 389
Score = 145 (56.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 34/76 (44%), Positives = 48/76 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGA-L 1414
ALIL+PTRELA+Q I + G++ +K V+GG S + Q ++ CP ++VATPG L
Sbjct: 112 ALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFL 171
Query: 1415 SL-KRIDLA-KSIEYL 1428
L +DL SIEY+
Sbjct: 172 HLCVEMDLKLNSIEYV 187
Score = 108 (43.1 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+I+ + ++G+K PT IQ +P +L +D+V A+TGSGKT F IP+
Sbjct: 50 LIKGITKRGYKVPTPIQRKTIP-LILEGRDVVAMAKTGSGKTACFLIPL 97
Score = 108 (43.1 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+I+ + ++G+K PT IQ +P +L +D+V A+TGSGKT F IP+
Sbjct: 50 LIKGITKRGYKVPTPIQRKTIP-LILEGRDVVAMAKTGSGKTACFLIPL 97
Score = 67 (28.6 bits), Expect = 2.6e-20, Sum P(3) = 2.6e-20
Identities = 27/114 (23%), Positives = 55/114 (48%)
Query: 1211 VLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDE------ 1264
V + + ID+ S++++ + +P ++HR GR ARA G ++ +D+
Sbjct: 337 VTDVAARGIDIP-SLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLD 395
Query: 1265 IPLYI-KMFNSLEKKV--DLPDFPIDESVLSL--IKKRIDLAKSIEYLESKIKK 1313
+ L++ + FN + +P ++E L++ IKK +A + E+ KK
Sbjct: 396 LHLFLNRPFNIHDSSALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENAYKK 449
Score = 43 (20.2 bits), Expect = 3.3e-17, Sum P(3) = 3.3e-17
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 356 ELK-NILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
+LK N ++ V E + + E G +L L R+ + RQT +FSATL
Sbjct: 178 DLKLNSIEYVVFDEADR----LFEMGFGEQLNETLHRLPSS-----RQTVMFSATL 224
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 321 (118.1 bits), Expect = 4.0e-34, Sum P(2) = 4.0e-34
Identities = 84/315 (26%), Positives = 153/315 (48%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
YAL++APTREL Q++ + ++ +V +VGG S E Q ++K I++ATPGRL
Sbjct: 491 YALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRL 550
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV--TMTETSQPRQTFVF 995
+ ++ + L + NY+V+DE D MI+ G P++ ++LD + + ++
Sbjct: 551 NDCLEKRYLVLNQC---NYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLKSEDDEMAEKQ 607
Query: 996 SATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055
+ +H P +++L ++ P + + E + + +
Sbjct: 608 ESDRSHIYRTTILFSATM---------PPLVEKLSKKY-LRRPCTITIGEAGKVVDRIRQ 657
Query: 1056 SKILCKHD-EKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
+ I K + +K +L I P ++ F N + +L + S LH+ +Q
Sbjct: 658 TVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQ 717
Query: 1114 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
QR L+ F+ + +L+AT VA+RG+ + G+ HVI++ +P+ E Y HR GRT RA +
Sbjct: 718 EQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGS 777
Query: 1174 EGLTLVLIESDEIPL 1188
GL I ++ +
Sbjct: 778 AGLASSFITDKDVEI 792
Score = 189 (71.6 bits), Expect = 3.2e-33, Sum P(3) = 3.2e-33
Identities = 51/212 (24%), Positives = 101/212 (47%)
Query: 449 PKIVDLTEKIGITKTLTESKILCKHDEKD-SYLYYFILQHPGRTLCEEIQDLLN--IKSP 505
P++ + + + + +E + + E D S++Y + T+ ++ L ++ P
Sbjct: 582 PQVTSVLDAMPSSFLKSEDDEMAEKQESDRSHIYRTTILFSA-TMPPLVEKLSKKYLRRP 640
Query: 506 KIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQHPGRTLV-FCNSISSVKRLTQL 563
+ + E + + ++ I K + +K +L I P ++ F N + +
Sbjct: 641 CTITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPV 700
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
L + S LH+ +Q QR L+ F+ + +L+AT VA+RG+ + G+ HVI++ +P+
Sbjct: 701 LEECRVSYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPK 760
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
E Y HR GRT RA + GL I ++ +
Sbjct: 761 NIEDYTHRIGRTGRAGSAGLASSFITDKDVEI 792
Score = 178 (67.7 bits), Expect = 3.2e-33, Sum P(3) = 3.2e-33
Identities = 38/102 (37%), Positives = 63/102 (61%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
YAL++APTREL Q++ + ++ +V +VGG S E Q ++K I++ATPGRL
Sbjct: 491 YALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRL 550
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILD 362
+ ++ + L + NY+V+DE D MI+ G P++ ++LD
Sbjct: 551 NDCLEKRYLVLNQC---NYIVLDEADMMIDLGFEPQVTSVLD 589
Score = 141 (54.7 bits), Expect = 4.0e-34, Sum P(2) = 4.0e-34
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
W + N+P I+ A+ Q G++ P+ IQ +P +L R DI+G AETGSGKT AF IP+L
Sbjct: 415 WQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGR-DILGIAETGSGKTCAFVIPML 472
Score = 141 (54.7 bits), Expect = 4.0e-34, Sum P(2) = 4.0e-34
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
W + N+P I+ A+ Q G++ P+ IQ +P +L R DI+G AETGSGKT AF IP+L
Sbjct: 415 WQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGR-DILGIAETGSGKTCAFVIPML 472
Score = 108 (43.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL++APTREL Q++ + ++ +V +VGG S E Q ++K I++ATPG L+
Sbjct: 492 ALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLN 551
Score = 58 (25.5 bits), Expect = 1.2e-19, Sum P(3) = 1.2e-19
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 1232 IKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPL 1267
I KN D + HR GRT RA + GL I ++ +
Sbjct: 758 IPKNIED-YTHRIGRTGRAGSAGLASSFITDKDVEI 792
Score = 41 (19.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 1394 EKQLRILNKCPHILVATPGALSLKRID--LAKSIEYLESKIKKNRPDNWLEKAAKD 1447
EK+ +LN+C +I++ + + + ++ + S K+ D EK D
Sbjct: 555 EKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLKSEDDEMAEKQESD 610
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 238 (88.8 bits), Expect = 8.6e-33, Sum P(4) = 8.6e-33
Identities = 65/171 (38%), Positives = 99/171 (57%)
Query: 491 TLCEEIQDL--LNIKSP-KIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFI--LQHP 544
T+ +I+ L L++K P +I+ K TK E + K D K + L+ I L
Sbjct: 418 TMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPT 477
Query: 545 G--RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 602
G R +VF + RL ++ +L S LH S+ Q QRL ++++F++ +L+ TD
Sbjct: 478 GQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTD 537
Query: 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI-ESDE 652
+A+RGLDIP IE VI+Y +P++ EIY+HR GRTARA EG +V + ES +
Sbjct: 538 LASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQ 588
Score = 233 (87.1 bits), Expect = 4.5e-34, Sum P(3) = 4.5e-34
Identities = 64/167 (38%), Positives = 96/167 (57%)
Query: 1026 IKRLQDLLNIKSP-KIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFI--LQHPG--R 1079
IK L L ++K P +I+ K TK E + K D K + L+ I L G R
Sbjct: 423 IKSLVSL-SLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKR 481
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
+VF + RL ++ +L S LH S+ Q QRL ++++F++ +L+ TD+A+R
Sbjct: 482 IVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASR 541
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI-ESDE 1185
GLDIP IE VI+Y +P++ EIY+HR GRTARA EG ++ + ES +
Sbjct: 542 GLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQ 588
Score = 158 (60.7 bits), Expect = 4.5e-34, Sum P(3) = 4.5e-34
Identities = 42/122 (34%), Positives = 66/122 (54%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
++L PTRELAIQV + ++ + VGG++ +Q ++L P I++ATPGR
Sbjct: 306 IVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFI 365
Query: 939 EFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+ I+ F++ + LV+DE DRM+E G EL I+ + RQ +FSA
Sbjct: 366 DHIRNSASFNVDS---VEILVMDEADRMLEEGFQDELNEIMGLLPSN-----RQNLLFSA 417
Query: 998 TL 999
T+
Sbjct: 418 TM 419
Score = 147 (56.8 bits), Expect = 8.6e-33, Sum P(4) = 8.6e-33
Identities = 36/101 (35%), Positives = 57/101 (56%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
++L PTRELAIQV + ++ + VGG++ +Q ++L P I++ATPGR
Sbjct: 306 IVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFI 365
Query: 322 EFIQ-LGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
+ I+ F++ + LV+DE DRM+E G EL I+
Sbjct: 366 DHIRNSASFNVDS---VEILVMDEADRMLEEGFQDELNEIM 403
Score = 121 (47.7 bits), Expect = 4.5e-34, Sum P(3) = 4.5e-34
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 766 QMAE-WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
QM E + ++ +++ L G+ P+ IQS +P ALL KDI+ A TGSGKT AF
Sbjct: 228 QMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLG-KDIIAGAVTGSGKTAAFM 286
Query: 825 IPILTGIVNK 834
IPI+ ++ K
Sbjct: 287 IPIIERLLYK 296
Score = 121 (47.7 bits), Expect = 8.6e-33, Sum P(4) = 8.6e-33
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 149 QMAE-WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
QM E + ++ +++ L G+ P+ IQS +P ALL KDI+ A TGSGKT AF
Sbjct: 228 QMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLG-KDIIAGAVTGSGKTAAFM 286
Query: 208 IPILTGIVNK 217
IPI+ ++ K
Sbjct: 287 IPIIERLLYK 296
Score = 119 (46.9 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 40/137 (29%), Positives = 70/137 (51%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGA-L 1414
++L PTRELAIQV + ++ + VGG++ +Q ++L P I++ATPG +
Sbjct: 306 IVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFI 365
Query: 1415 SLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
R + +++ +E + + D LE+ +D ++ ++R+N L S +
Sbjct: 366 DHIRNSASFNVDSVEILVM-DEADRMLEEGFQD-----ELNEIMGLLPSNRQNLLFSATM 419
Query: 1475 VSKRKELQSL-LGKSVQ 1490
SK K L SL L K V+
Sbjct: 420 NSKIKSLVSLSLKKPVR 436
Score = 65 (27.9 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 1214 LIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLI-ESDE 1264
L + +D+ K IE + + + +LHR GRTARA EG ++ + ES +
Sbjct: 538 LASRGLDIPK-IEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQ 588
Score = 38 (18.4 bits), Expect = 8.6e-33, Sum P(4) = 8.6e-33
Identities = 5/15 (33%), Positives = 14/15 (93%)
Query: 954 INYLVIDETDRMIES 968
++++ I+ET++++ES
Sbjct: 616 VDWVQIEETNKLVES 630
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 208 (78.3 bits), Expect = 5.6e-34, Sum P(4) = 5.6e-34
Identities = 50/159 (31%), Positives = 88/159 (55%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGRTLVFCNSISSVK 1091
+ P ++ L + +++ L + + D+K + L + +++ +T+VF + +
Sbjct: 232 LTEPMLIRLDVESKLSEQLKLAFFHVRGDDKPAVLLHLLRCVVKPQDQTVVFVATKHHTE 291
Query: 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151
L +LLT +++S++Q R N+ +F +LL TDVAARGLDIP +++VI+
Sbjct: 292 YLKELLTSQGICCTHIYSSLDQTARKINIAKFAHGKCQVLLVTDVAARGLDIPMLDNVIN 351
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190
Y P S++++HR GR ARA G L+ DE+P YI
Sbjct: 352 YSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEMP-YI 389
Score = 206 (77.6 bits), Expect = 2.4e-33, Sum P(4) = 2.4e-33
Identities = 48/156 (30%), Positives = 86/156 (55%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---ILQHPGRTLVFCNSISSVK 558
+ P ++ L + +++ L + + D+K + L + +++ +T+VF + +
Sbjct: 232 LTEPMLIRLDVESKLSEQLKLAFFHVRGDDKPAVLLHLLRCVVKPQDQTVVFVATKHHTE 291
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
L +LLT +++S++Q R N+ +F +LL TDVAARGLDIP +++VI+
Sbjct: 292 YLKELLTSQGICCTHIYSSLDQTARKINIAKFAHGKCQVLLVTDVAARGLDIPMLDNVIN 351
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
Y P S++++HR GR ARA G L+ DE+P
Sbjct: 352 YSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEMP 387
Score = 204 (76.9 bits), Expect = 5.6e-34, Sum P(4) = 5.6e-34
Identities = 50/121 (41%), Positives = 71/121 (58%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
ALIL+PTRELA+Q + GK+T +K A V+GG E Q L++ P I++ATPGRL
Sbjct: 108 ALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHENPDIIIATPGRL- 166
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ + +L + Y+V DE DR+ E G +L+ IL R+ + QT +FSAT
Sbjct: 167 --VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEILARLPGSH-----QTVLFSAT 219
Query: 999 L 999
L
Sbjct: 220 L 220
Score = 200 (75.5 bits), Expect = 1.4e-33, Sum P(4) = 1.4e-33
Identities = 51/135 (37%), Positives = 75/135 (55%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
ALIL+PTRELA+Q + GK+T +K A V+GG E Q L++ P I++ATPGRL
Sbjct: 108 ALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHENPDIIIATPGRL- 166
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ + +L + Y+V DE DR+ E G +L+ IL R+ + QT++ S
Sbjct: 167 --VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEILARLPGSH-----QTVLFSAT 219
Query: 382 FPELKNILDRVTMTE 396
P+L R +TE
Sbjct: 220 LPKLLVEFARAGLTE 234
Score = 144 (55.7 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALIL+PTRELA+Q + GK+T +K A V+GG E Q L++ P I++ATPG L
Sbjct: 108 ALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHENPDIIIATPGRLV 167
Query: 1416 LKRIDL---AKSIEYL 1428
+++ +S+EY+
Sbjct: 168 HVAVEMNLKLQSVEYV 183
Score = 105 (42.0 bits), Expect = 5.6e-34, Sum P(4) = 5.6e-34
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
+ + + +KG+K PT IQ +P +L +D+V A TGSGKT F +P+
Sbjct: 47 VFKGVMKKGYKVPTPIQRKTIP-VILRGRDVVAMARTGSGKTACFLLPM 94
Score = 105 (42.0 bits), Expect = 5.6e-34, Sum P(4) = 5.6e-34
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
+ + + +KG+K PT IQ +P +L +D+V A TGSGKT F +P+
Sbjct: 47 VFKGVMKKGYKVPTPIQRKTIP-VILRGRDVVAMARTGSGKTACFLLPM 94
Score = 73 (30.8 bits), Expect = 3.6e-20, Sum P(4) = 3.6e-20
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 1192 MFNSLE---KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN---WLHRSG 1245
+++SL+ +K+++ F + + L+ I L++ I + P +LHR G
Sbjct: 307 IYSSLDQTARKINIAKFAHGKCQVLLVTDVAARGLDIPMLDNVINYSFPAKSKLFLHRVG 366
Query: 1246 RTARANNEGLTLVLIESDEIPLYI 1269
R ARA G L+ DE+P YI
Sbjct: 367 RVARAGRSGTAYSLVAPDEMP-YI 389
Score = 43 (20.2 bits), Expect = 5.6e-34, Sum P(4) = 5.6e-34
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 1391 MSTEKQLRILNKCPHILVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKD 1447
++ KQL ++ V G K++ +S Y+ S K N + W +K D
Sbjct: 663 LNRSKQLLKWDRKKKRFVGQTGQEEKKKVR-TESGRYISSSYKNNLYEKWKQKNKVD 718
Score = 42 (19.8 bits), Expect = 7.1e-34, Sum P(4) = 7.1e-34
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 1295 KKRIDLAKSIEYLESKIKKNRPDNWLEKAAKD 1326
KK++ +S Y+ S K N + W +K D
Sbjct: 688 KKKVR-TESGRYISSSYKNNLYEKWKQKNKVD 718
Score = 39 (18.8 bits), Expect = 1.4e-33, Sum P(4) = 1.4e-33
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 1216 KKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNE 1253
KK++ +S Y+ S K N + W ++ R +E
Sbjct: 688 KKKVR-TESGRYISSSYKNNLYEKWKQKNKVDERDEDE 724
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 310 (114.2 bits), Expect = 6.0e-34, Sum P(2) = 6.0e-34
Identities = 97/348 (27%), Positives = 165/348 (47%)
Query: 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP-HI 929
+K N+ LILAPTRELA+Q+ K +V ++GG + + +++ H+
Sbjct: 241 EKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHL 300
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV-TMTETS- 987
+VATPGRL + I+ + +L K LV+DE DRMI+ G +L +LD++ T + S
Sbjct: 301 IVATPGRLVDSIER---KIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSS 357
Query: 988 ---------QPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSP 1038
+ R T +F+AT++ ++ + S
Sbjct: 358 TIDGRIFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSS 417
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 1098
+ T+ K + KI+ H + + ++P ++F N L+Q L+
Sbjct: 418 ATTEATK---FNKLI---KIIRSH--------WRVTENP-LIIIFANFKHVCDSLSQELS 462
Query: 1099 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158
+ + +H S +Q R + + FR+ + +L+ATDVAARG+DIP + VI+Y + +
Sbjct: 463 SNDINNVVIHGSKSQDMREQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKF 522
Query: 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDF 1205
+ YIHR GRT RA N G + I + ++ + L+K LPD+
Sbjct: 523 DEYIHRIGRTGRAGNLGESFTFISDQDTEIFTPLKKFLKKGGKRLPDW 570
Score = 187 (70.9 bits), Expect = 4.4e-32, Sum P(3) = 4.4e-32
Identities = 46/127 (36%), Positives = 73/127 (57%)
Query: 537 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 596
++ + ++P ++F N L+Q L+ + + +H S +Q R + + FR+ +
Sbjct: 435 HWRVTENP-LIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQAITNFRNHESE 493
Query: 597 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN--EGLTVVLIESDEI- 653
+L+ATDVAARG+DIP + VI+Y + + + YIHR GRT RA N E T + + EI
Sbjct: 494 VLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQDTEIF 553
Query: 654 -PLKTKF 659
PLK KF
Sbjct: 554 TPLK-KF 559
Score = 160 (61.4 bits), Expect = 4.4e-32, Sum P(3) = 4.4e-32
Identities = 40/112 (35%), Positives = 64/112 (57%)
Query: 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP-HI 312
+K N+ LILAPTRELA+Q+ K +V ++GG + + +++ H+
Sbjct: 241 EKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHL 300
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364
+VATPGRL + I+ + +L K LV+DE DRMI+ G +L +LD++
Sbjct: 301 IVATPGRLVDSIER---KIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKL 349
Score = 143 (55.4 bits), Expect = 6.0e-34, Sum P(2) = 6.0e-34
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + +I + ++ + Q G++ PT +Q +P AL ++D+VG AETGSGKTLAF IP+L
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLAL-KKRDVVGVAETGSGKTLAFLIPVLN 228
Query: 830 GIVNKLEN 837
I++ EN
Sbjct: 229 YILSIDEN 236
Score = 143 (55.4 bits), Expect = 4.4e-32, Sum P(3) = 4.4e-32
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + +I + ++ + Q G++ PT +Q +P AL ++D+VG AETGSGKTLAF IP+L
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLAL-KKRDVVGVAETGSGKTLAFLIPVLN 228
Query: 213 GIVNKLEN 220
I++ EN
Sbjct: 229 YILSIDEN 236
Score = 99 (39.9 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP-HILVATPGAL- 1414
LILAPTRELA+Q+ K +V ++GG + + +++ H++VATPG L
Sbjct: 250 LILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLV 309
Query: 1415 -SLKR--IDLAK 1423
S++R +DL+K
Sbjct: 310 DSIERKIVDLSK 321
Score = 70 (29.7 bits), Expect = 8.1e-20, Sum P(3) = 8.1e-20
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDF 1284
D ++HR GRT RA N G + I + ++ + L+K LPD+
Sbjct: 523 DEYIHRIGRTGRAGNLGESFTFISDQDTEIFTPLKKFLKKGGKRLPDW 570
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 310 (114.2 bits), Expect = 6.0e-34, Sum P(2) = 6.0e-34
Identities = 97/348 (27%), Positives = 165/348 (47%)
Query: 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP-HI 929
+K N+ LILAPTRELA+Q+ K +V ++GG + + +++ H+
Sbjct: 241 EKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHL 300
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV-TMTETS- 987
+VATPGRL + I+ + +L K LV+DE DRMI+ G +L +LD++ T + S
Sbjct: 301 IVATPGRLVDSIER---KIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSS 357
Query: 988 ---------QPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSP 1038
+ R T +F+AT++ ++ + S
Sbjct: 358 TIDGRIFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSS 417
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 1098
+ T+ K + KI+ H + + ++P ++F N L+Q L+
Sbjct: 418 ATTEATK---FNKLI---KIIRSH--------WRVTENP-LIIIFANFKHVCDSLSQELS 462
Query: 1099 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158
+ + +H S +Q R + + FR+ + +L+ATDVAARG+DIP + VI+Y + +
Sbjct: 463 SNDINNVVIHGSKSQDMREQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKF 522
Query: 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDF 1205
+ YIHR GRT RA N G + I + ++ + L+K LPD+
Sbjct: 523 DEYIHRIGRTGRAGNLGESFTFISDQDTEIFTPLKKFLKKGGKRLPDW 570
Score = 187 (70.9 bits), Expect = 4.4e-32, Sum P(3) = 4.4e-32
Identities = 46/127 (36%), Positives = 73/127 (57%)
Query: 537 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 596
++ + ++P ++F N L+Q L+ + + +H S +Q R + + FR+ +
Sbjct: 435 HWRVTENP-LIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQAITNFRNHESE 493
Query: 597 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN--EGLTVVLIESDEI- 653
+L+ATDVAARG+DIP + VI+Y + + + YIHR GRT RA N E T + + EI
Sbjct: 494 VLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQDTEIF 553
Query: 654 -PLKTKF 659
PLK KF
Sbjct: 554 TPLK-KF 559
Score = 160 (61.4 bits), Expect = 4.4e-32, Sum P(3) = 4.4e-32
Identities = 40/112 (35%), Positives = 64/112 (57%)
Query: 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP-HI 312
+K N+ LILAPTRELA+Q+ K +V ++GG + + +++ H+
Sbjct: 241 EKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHL 300
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364
+VATPGRL + I+ + +L K LV+DE DRMI+ G +L +LD++
Sbjct: 301 IVATPGRLVDSIER---KIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKL 349
Score = 143 (55.4 bits), Expect = 6.0e-34, Sum P(2) = 6.0e-34
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W + +I + ++ + Q G++ PT +Q +P AL ++D+VG AETGSGKTLAF IP+L
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLAL-KKRDVVGVAETGSGKTLAFLIPVLN 228
Query: 830 GIVNKLEN 837
I++ EN
Sbjct: 229 YILSIDEN 236
Score = 143 (55.4 bits), Expect = 4.4e-32, Sum P(3) = 4.4e-32
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W + +I + ++ + Q G++ PT +Q +P AL ++D+VG AETGSGKTLAF IP+L
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLAL-KKRDVVGVAETGSGKTLAFLIPVLN 228
Query: 213 GIVNKLEN 220
I++ EN
Sbjct: 229 YILSIDEN 236
Score = 99 (39.9 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP-HILVATPGAL- 1414
LILAPTRELA+Q+ K +V ++GG + + +++ H++VATPG L
Sbjct: 250 LILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLV 309
Query: 1415 -SLKR--IDLAK 1423
S++R +DL+K
Sbjct: 310 DSIERKIVDLSK 321
Score = 70 (29.7 bits), Expect = 8.1e-20, Sum P(3) = 8.1e-20
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-LPDF 1284
D ++HR GRT RA N G + I + ++ + L+K LPD+
Sbjct: 523 DEYIHRIGRTGRAGNLGESFTFISDQDTEIFTPLKKFLKKGGKRLPDW 570
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 234 (87.4 bits), Expect = 2.0e-32, Sum P(4) = 2.0e-32
Identities = 54/149 (36%), Positives = 81/149 (54%)
Query: 505 PKIVDLTEKIGITKTLTE-SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563
P++V +T +K+L E + I+C+ EK+ Y+ + + + F N + +T+
Sbjct: 196 PQLVRVTR--AESKSLVEHTYIICERREKNDYVRRIMHMGDVKAVAFLNDPFRLDEITEK 253
Query: 564 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623
L K LHA ++++R + FR ILLATD+AARG+DI + HVIH +P
Sbjct: 254 LKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPD 313
Query: 624 TSEIYIHRSGRTARANNEGLTVVLIESDE 652
T + YIHRSGRT R EG V L+ E
Sbjct: 314 TVDQYIHRSGRTGRMGKEGTVVSLVTPQE 342
Score = 231 (86.4 bits), Expect = 6.2e-34, Sum P(3) = 6.2e-34
Identities = 53/149 (35%), Positives = 81/149 (54%)
Query: 1038 PKIVDLTEKIGITKTLTE-SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 1096
P++V +T +K+L E + I+C+ EK+ Y+ + + + F N + +T+
Sbjct: 196 PQLVRVTR--AESKSLVEHTYIICERREKNDYVRRIMHMGDVKAVAFLNDPFRLDEITEK 253
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
L K LHA ++++R + FR ILLATD+AARG+DI + HVIH +P
Sbjct: 254 LKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPD 313
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDE 1185
T + YIHRSGRT R EG + L+ E
Sbjct: 314 TVDQYIHRSGRTGRMGKEGTVVSLVTPQE 342
Score = 158 (60.7 bits), Expect = 6.2e-34, Sum P(3) = 6.2e-34
Identities = 35/121 (28%), Positives = 70/121 (57%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
++LAPTREL +Q+ + T + A ++GG ++Q+ L K P ++V +PGR+ E
Sbjct: 70 VVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGSPGRILE 129
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
I++ +++++ +V DE D++++ +++++ + TM + RQ FSAT+
Sbjct: 130 LIRMKKL---KMHEVKTIVFDEFDQIVKQKMMGAVQDVI-KSTMRD----RQLVFFSATM 181
Query: 1000 T 1000
T
Sbjct: 182 T 182
Score = 140 (54.3 bits), Expect = 2.0e-32, Sum P(4) = 2.0e-32
Identities = 28/106 (26%), Positives = 62/106 (58%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
++LAPTREL +Q+ + T + A ++GG ++Q+ L K P ++V +PGR+ E
Sbjct: 70 VVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGSPGRILE 129
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
I++ +++++ +V DE D++++ +++++ + TM +
Sbjct: 130 LIRMKKL---KMHEVKTIVFDEFDQIVKQKMMGAVQDVI-KSTMRD 171
Score = 105 (42.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
++LAPTREL +Q+ + T + A ++GG ++Q+ L K P ++V +PG + L
Sbjct: 70 VVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGSPGRI-L 128
Query: 1417 KRIDLAK 1423
+ I + K
Sbjct: 129 ELIRMKK 135
Score = 100 (40.3 bits), Expect = 6.2e-34, Sum P(3) = 6.2e-34
Identities = 21/63 (33%), Positives = 41/63 (65%)
Query: 160 ETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 218
+ ++ ++K GFK T+IQ +P+ +L +D++ + TG+GKTLA+ +P+L I ++
Sbjct: 6 QPFLQQAWEKAGFKELTEIQKQAIPT-ILEGQDVIAESPTGTGKTLAYLLPLLHKINPEV 64
Query: 219 ENP 221
+ P
Sbjct: 65 KQP 67
Score = 100 (40.3 bits), Expect = 6.2e-34, Sum P(3) = 6.2e-34
Identities = 21/63 (33%), Positives = 41/63 (65%)
Query: 777 ETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 835
+ ++ ++K GFK T+IQ +P+ +L +D++ + TG+GKTLA+ +P+L I ++
Sbjct: 6 QPFLQQAWEKAGFKELTEIQKQAIPT-ILEGQDVIAESPTGTGKTLAYLLPLLHKINPEV 64
Query: 836 ENP 838
+ P
Sbjct: 65 KQP 67
Score = 66 (28.3 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDE 1264
D ++HRSGRT R EG + L+ E
Sbjct: 316 DQYIHRSGRTGRMGKEGTVVSLVTPQE 342
Score = 37 (18.1 bits), Expect = 2.0e-32, Sum P(4) = 2.0e-32
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 397 TSQPRQTFVFSATLT 411
T + RQ FSAT+T
Sbjct: 168 TMRDRQLVFFSATMT 182
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 211 (79.3 bits), Expect = 7.4e-34, Sum P(3) = 7.4e-34
Identities = 48/119 (40%), Positives = 71/119 (59%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ + + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 159 LVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 218
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 219 FLEAGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 269
Score = 208 (78.3 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 48/129 (37%), Positives = 76/129 (58%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ + + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 159 LVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 218
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 219 FLEAGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 270
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 271 PKEVRQLAE 279
Score = 184 (69.8 bits), Expect = 7.4e-34, Sum P(3) = 7.4e-34
Identities = 54/165 (32%), Positives = 82/165 (49%)
Query: 1059 LCKHD-EKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
+C HD EKD L + + +T+VF + LT+ + + +H +Q
Sbjct: 307 VC-HDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQ 365
Query: 1114 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
++R L+ F+ IL+ATDVA+RGLD+ ++ VI+Y P +SE YIHR GRTAR+
Sbjct: 366 QERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTK 425
Query: 1174 EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
G P IK N L + + I+ +L LI+ R
Sbjct: 426 TGTAYTFFT----PNNIKQVNDLISVLREANQAINPKLLQLIEDR 466
Score = 174 (66.3 bits), Expect = 1.8e-32, Sum P(3) = 1.8e-32
Identities = 45/133 (33%), Positives = 69/133 (51%)
Query: 526 LCKHD-EKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 580
+C HD EKD L + + +T+VF + LT+ + + +H +Q
Sbjct: 307 VC-HDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQ 365
Query: 581 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 640
++R L+ F+ IL+ATDVA+RGLD+ ++ VI+Y P +SE YIHR GRTAR+
Sbjct: 366 QERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTK 425
Query: 641 EGLTVVLIESDEI 653
G + I
Sbjct: 426 TGTAYTFFTPNNI 438
Score = 111 (44.1 bits), Expect = 7.4e-34, Sum P(3) = 7.4e-34
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N P ++ + ++ F PT IQ+ P AL + D+VG A+TGSGKTL++ +P + I
Sbjct: 88 NFPANVMEVIQRQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHI 144
Score = 111 (44.1 bits), Expect = 7.4e-34, Sum P(3) = 7.4e-34
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N P ++ + ++ F PT IQ+ P AL + D+VG A+TGSGKTL++ +P + I
Sbjct: 88 NFPANVMEVIQRQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHI 144
Score = 110 (43.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ + + +K C+ GG Q+R L + I +ATPG L
Sbjct: 159 LVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 216
Score = 64 (27.6 bits), Expect = 1.9e-21, Sum P(3) = 1.9e-21
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRTAR+ G P IK N L + + I+ +L LI
Sbjct: 408 NSSEDYIHRIGRTARSTKTGTAYTFFT----PNNIKQVNDLISVLREANQAINPKLLQLI 463
Query: 1295 KKR 1297
+ R
Sbjct: 464 EDR 466
Score = 48 (22.0 bits), Expect = 7.5e-17, Sum P(3) = 7.5e-17
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 241 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 269
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 211 (79.3 bits), Expect = 8.0e-34, Sum P(3) = 8.0e-34
Identities = 48/119 (40%), Positives = 71/119 (59%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ + + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 167 LVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 226
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 227 FLEAGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 277
Score = 208 (78.3 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 48/129 (37%), Positives = 76/129 (58%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ + + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 167 LVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 226
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 227 FLEAGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 278
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 279 PKEVRQLAE 287
Score = 184 (69.8 bits), Expect = 8.0e-34, Sum P(3) = 8.0e-34
Identities = 54/165 (32%), Positives = 82/165 (49%)
Query: 1059 LCKHD-EKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
+C HD EKD L + + +T+VF + LT+ + + +H +Q
Sbjct: 315 VC-HDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQ 373
Query: 1114 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
++R L+ F+ IL+ATDVA+RGLD+ ++ VI+Y P +SE YIHR GRTAR+
Sbjct: 374 QERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTK 433
Query: 1174 EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
G P IK N L + + I+ +L LI+ R
Sbjct: 434 TGTAYTFFT----PNNIKQVNDLISVLREANQAINPKLLQLIEDR 474
Score = 174 (66.3 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 45/133 (33%), Positives = 69/133 (51%)
Query: 526 LCKHD-EKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 580
+C HD EKD L + + +T+VF + LT+ + + +H +Q
Sbjct: 315 VC-HDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQ 373
Query: 581 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 640
++R L+ F+ IL+ATDVA+RGLD+ ++ VI+Y P +SE YIHR GRTAR+
Sbjct: 374 QERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTK 433
Query: 641 EGLTVVLIESDEI 653
G + I
Sbjct: 434 TGTAYTFFTPNNI 446
Score = 111 (44.1 bits), Expect = 8.0e-34, Sum P(3) = 8.0e-34
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
N P ++ + ++ F PT IQ+ P AL + D+VG A+TGSGKTL++ +P + I
Sbjct: 96 NFPANVMEVIQRQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHI 152
Score = 111 (44.1 bits), Expect = 8.0e-34, Sum P(3) = 8.0e-34
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
N P ++ + ++ F PT IQ+ P AL + D+VG A+TGSGKTL++ +P + I
Sbjct: 96 NFPANVMEVIQRQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHI 152
Score = 110 (43.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ + + +K C+ GG Q+R L + I +ATPG L
Sbjct: 167 LVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 224
Score = 64 (27.6 bits), Expect = 2.0e-21, Sum P(3) = 2.0e-21
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRTAR+ G P IK N L + + I+ +L LI
Sbjct: 416 NSSEDYIHRIGRTARSTKTGTAYTFFT----PNNIKQVNDLISVLREANQAINPKLLQLI 471
Query: 1295 KKR 1297
+ R
Sbjct: 472 EDR 474
Score = 48 (22.0 bits), Expect = 8.0e-17, Sum P(3) = 8.0e-17
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 249 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 277
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 204 (76.9 bits), Expect = 8.1e-34, Sum P(3) = 8.1e-34
Identities = 50/136 (36%), Positives = 76/136 (55%)
Query: 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 924
N+ E + + ALIL PTRELA QV ++I +Y P+K V GG Q ++L
Sbjct: 80 NSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLK 139
Query: 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 984
+ +LVATPGRL E + L + L++ + +LV+DE DRM++ G +++ +L V
Sbjct: 140 QGLDVLVATPGRLLEHLALRNVDLSQ---VKFLVLDEADRMLDMGFLTDIEKLLLAV--- 193
Query: 985 ETSQPRQTFVFSATLT 1000
QT +FSAT +
Sbjct: 194 --KHKHQTLMFSATFS 207
Score = 204 (76.9 bits), Expect = 4.3e-33, Sum P(3) = 4.3e-33
Identities = 51/166 (30%), Positives = 84/166 (50%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRT 547
T + ++ L N +KSPK + ++++ + + ++ + K L I + + +
Sbjct: 205 TFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKRELLSELIGVNNWQQV 264
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + S L + L + H Q R K L++F + +L+ATDVAARG
Sbjct: 265 LVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARG 324
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIE-SDE 652
LDIP + V+++H+P E Y+HR GRT RA G + L+ DE
Sbjct: 325 LDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDE 370
Score = 201 (75.8 bits), Expect = 8.1e-34, Sum P(3) = 8.1e-34
Identities = 62/231 (26%), Positives = 110/231 (47%)
Query: 1028 RLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFC 1084
R++ L N +KSPK + ++++ + + ++ + K L I + + + LVF
Sbjct: 209 RVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKRELLSELIGVNNWQQVLVFA 268
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
+ S L + L + H Q R K L++F + +L+ATDVAARGLDIP
Sbjct: 269 GTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARGLDIP 328
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD 1204
+ V+++H+P E Y+HR GRT RA G + L+ + + +E+K +
Sbjct: 329 DLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLENIEQLIERKFERIV 388
Query: 1205 FPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGL 1255
P E R++ + EY E+ +K++ + + R A+ N+ L
Sbjct: 389 APGYEF------NRLEAS---EYQEATVKRDSKNRY-----RAAQEKNQNL 425
Score = 194 (73.4 bits), Expect = 4.3e-33, Sum P(3) = 4.3e-33
Identities = 49/146 (33%), Positives = 82/146 (56%)
Query: 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307
N+ E + + ALIL PTRELA QV ++I +Y P+K V GG Q ++L
Sbjct: 80 NSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLK 139
Query: 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 367
+ +LVATPGRL E + L + L++ + +LV+DE DRM++ G +++ +L V
Sbjct: 140 QGLDVLVATPGRLLEHLALRNVDLSQ---VKFLVLDEADRMLDMGFLTDIEKLLLAV--- 193
Query: 368 ETSQPRQTMIESGHFPE-LKNILDRV 392
QT++ S F + +K++ +++
Sbjct: 194 --KHKHQTLMFSATFSDRVKSLANQL 217
Score = 136 (52.9 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 43/134 (32%), Positives = 66/134 (49%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALIL PTRELA QV ++I +Y P+K V GG Q ++L + +LVATPG L
Sbjct: 94 ALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLKQGLDVLVATPGRL- 152
Query: 1416 LKRIDLAKSIEYLESK-IKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
L+ + L ++++ + K + + D L DM E L+ + + + S
Sbjct: 153 LEHLAL-RNVDLSQVKFLVLDEADRML-----DMGFLTDIEKLLLAVKHKHQTLMFSATF 206
Query: 1475 VSKRKELQSLLGKS 1488
+ K L + L KS
Sbjct: 207 SDRVKSLANQLLKS 220
Score = 94 (38.1 bits), Expect = 8.1e-34, Sum P(3) = 8.1e-34
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+++A+ G+K T IQ +P + D++ +A+TG+GKT AF +PIL I
Sbjct: 12 LLKAVKACGYKNLTPIQQEAIP-VIRQGVDLLASAQTGTGKTAAFSLPILDAI 63
Score = 94 (38.1 bits), Expect = 8.1e-34, Sum P(3) = 8.1e-34
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+++A+ G+K T IQ +P + D++ +A+TG+GKT AF +PIL I
Sbjct: 12 LLKAVKACGYKNLTPIQQEAIP-VIRQGVDLLASAQTGTGKTAAFSLPILDAI 63
Score = 63 (27.2 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIE-SDE 1264
P++++HR GRT RA G + L+ DE
Sbjct: 342 PEDYVHRVGRTGRAGKSGTAISLVSPKDE 370
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 218 (81.8 bits), Expect = 8.3e-34, Sum P(3) = 8.3e-34
Identities = 58/165 (35%), Positives = 83/165 (50%)
Query: 1046 KIGITKTLTESKIL-CKHDEKDSYLYYFILQHPGR---TLVFCNSISSVKRLTQLLTMLK 1101
++G T KI+ + DEK SYL +L G TLVF + L L
Sbjct: 458 RVGSTSENIMQKIVWVEEDEKRSYLMD-LLDATGDSSLTLVFVETKRGASDLAYYLNRQN 516
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
+ +H + Q +R K+LD FR IL+AT VAARGLDIP ++HVI+Y +P + Y
Sbjct: 517 YEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEY 576
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDF 1205
+HR GRT R N GL + ++ + + E +LPD+
Sbjct: 577 VHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEANQELPDW 621
Score = 216 (81.1 bits), Expect = 4.5e-33, Sum P(3) = 4.5e-33
Identities = 60/159 (37%), Positives = 81/159 (50%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKIL-CKHDEKDSYLYYFILQHPGR- 546
T +EIQ L +K + ++G T KI+ + DEK SYL +L G
Sbjct: 434 TFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMD-LLDATGDS 492
Query: 547 --TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
TLVF + L L + +H + Q +R K+LD FR IL+AT VA
Sbjct: 493 SLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVA 552
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
ARGLDIP ++HVI+Y +P + Y+HR GRT R N GL
Sbjct: 553 ARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGL 591
Score = 191 (72.3 bits), Expect = 8.3e-34, Sum P(3) = 8.3e-34
Identities = 50/128 (39%), Positives = 73/128 (57%)
Query: 874 RNKLY--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK-QLRILNKCPHIL 930
R K Y AL+L+PTREL++Q+ N TP+ A + GG K Q+ L HIL
Sbjct: 311 RKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHIL 370
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
+ATPGRL + + G L + YLV+DE DRM++ G P+++ I++ M + + R
Sbjct: 371 IATPGRLIDVMDQG---LIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMP-SKEER 426
Query: 991 QTFVFSAT 998
T +FSAT
Sbjct: 427 ITAMFSAT 434
Score = 186 (70.5 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 49/131 (37%), Positives = 73/131 (55%)
Query: 257 RNKLY--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK-QLRILNKCPHIL 313
R K Y AL+L+PTREL++Q+ N TP+ A + GG K Q+ L HIL
Sbjct: 311 RKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHIL 370
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
+ATPGRL + + G L + YLV+DE DRM++ G P+++ I++ M + + R
Sbjct: 371 IATPGRLIDVMDQG---LIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMP-SKEER 426
Query: 374 QTMIESGHFPE 384
T + S FP+
Sbjct: 427 ITAMFSATFPK 437
Score = 110 (43.8 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 28/68 (41%), Positives = 38/68 (55%)
Query: 1348 RNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK-QLRILNKCPHI 1406
R +Y AL+L+PTREL++Q+ N TP+ A + GG K Q+ L HI
Sbjct: 311 RKKQYP-SALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHI 369
Query: 1407 LVATPGAL 1414
L+ATPG L
Sbjct: 370 LIATPGRL 377
Score = 100 (40.3 bits), Expect = 8.3e-34, Sum P(3) = 8.3e-34
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+ + EW++ NI G+ PT +Q +P AL +D++ A+TGSGKT AF
Sbjct: 236 LSLHEWIEENIKTA--------GYDRPTPVQKYSIP-ALQGGRDLMSCAQTGSGKTAAFL 286
Query: 208 IPILTGIV 215
+P++ I+
Sbjct: 287 VPLVNAIL 294
Score = 100 (40.3 bits), Expect = 8.3e-34, Sum P(3) = 8.3e-34
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+ + EW++ NI G+ PT +Q +P AL +D++ A+TGSGKT AF
Sbjct: 236 LSLHEWIEENIKTA--------GYDRPTPVQKYSIP-ALQGGRDLMSCAQTGSGKTAAFL 286
Query: 825 IPILTGIV 832
+P++ I+
Sbjct: 287 VPLVNAIL 294
Score = 61 (26.5 bits), Expect = 1.9e-17, Sum P(3) = 1.9e-17
Identities = 29/118 (24%), Positives = 53/118 (44%)
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDL---PDFPIDESVLSLIKKR-IDLAKSIEY 1227
N + +V I D +K F EK +DL PI V + + R +D+ ++++
Sbjct: 513 NRQNYEVVTIHGD-----LKQFER-EKHLDLFRTGTAPI--LVATAVAARGLDIP-NVKH 563
Query: 1228 LESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDF 1284
+ + + D ++HR GRT R N GL + ++ + + E +LPD+
Sbjct: 564 VINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEANQELPDW 621
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 231 (86.4 bits), Expect = 8.4e-34, Sum P(3) = 8.4e-34
Identities = 57/202 (28%), Positives = 103/202 (50%)
Query: 1027 KRLQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 1084
K++Q+ + P +++ + +T+ K + K YL + + L+F
Sbjct: 376 KKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQKTAPPVLIFA 435
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
V + + L + + +H +Q +R + +D +R +L+ATDVA++GLD P
Sbjct: 436 EKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFP 495
Query: 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI-ESDEIPLYIKMFNSL-EKKVDL 1202
++HVI+Y +P E Y+HR GRT R+N +GL LI ++ E + + + + L E K ++
Sbjct: 496 NVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEV 555
Query: 1203 PDFPIDESVLSLIKKRIDLAKS 1224
PDF +DE + +DL S
Sbjct: 556 PDF-LDELAPETEHQHLDLGDS 576
Score = 208 (78.3 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 46/160 (28%), Positives = 82/160 (51%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
T+ ++IQ+ + P +++ + +T+ K + K YL + + L
Sbjct: 373 TMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQKTAPPVL 432
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608
+F V + + L + + +H +Q +R + +D +R +L+ATDVA++GL
Sbjct: 433 IFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGL 492
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
D P ++HVI+Y +P E Y+HR GRT R+N +GL LI
Sbjct: 493 DFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLI 532
Score = 150 (57.9 bits), Expect = 8.4e-34, Sum P(3) = 8.4e-34
Identities = 44/128 (34%), Positives = 67/128 (52%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYT-----PVKVACV-VGGMSTEKQLRILNKCPHILV 931
Y LI+ P+RELA Q I K+ P +C+ +GG+ + L ++++ HI+V
Sbjct: 255 YGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVV 314
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + + + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 315 ATPGRLMDMLDK---KILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFK----GQ-RQ 366
Query: 992 TFVFSATL 999
T +FSAT+
Sbjct: 367 TLLFSATM 374
Score = 139 (54.0 bits), Expect = 5.1e-32, Sum P(4) = 5.1e-32
Identities = 42/130 (32%), Positives = 66/130 (50%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYT-----PVKVACV-VGGMSTEKQLRILNKCPHILV 314
Y LI+ P+RELA Q I K+ P +C+ +GG+ + L ++++ HI+V
Sbjct: 255 YGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVV 314
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + + + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 315 ATPGRLMDMLDK---KILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFK----GQ-RQ 366
Query: 375 TMIESGHFPE 384
T++ S P+
Sbjct: 367 TLLFSATMPK 376
Score = 124 (48.7 bits), Expect = 8.4e-34, Sum P(3) = 8.4e-34
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ P+ I+ L KG K PT IQ +P+ +LA +D++G A TGSGKTL F +P++
Sbjct: 181 EMKFPKGILNGLAAKGIKNPTPIQVQGLPT-VLAGRDLIGIAFTGSGKTLVFVLPVI 236
Score = 124 (48.7 bits), Expect = 8.4e-34, Sum P(3) = 8.4e-34
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ P+ I+ L KG K PT IQ +P+ +LA +D++G A TGSGKTL F +P++
Sbjct: 181 EMKFPKGILNGLAAKGIKNPTPIQVQGLPT-VLAGRDLIGIAFTGSGKTLVFVLPVI 236
Score = 96 (38.9 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 1220 DLA-KSIEY--LESKIKKNRPD---NWLHRSGRTARANNEGLTLVLI-ESDEIPLYIKMF 1272
D+A K +++ ++ I + PD N++HR GRT R+N +GL LI ++ E + + +
Sbjct: 486 DVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLK 545
Query: 1273 NSL-EKKVDLPDFPIDESVLSLIKKRIDLAKS 1303
+ L E K ++PDF +DE + +DL S
Sbjct: 546 HLLIEGKQEVPDF-LDELAPETEHQHLDLGDS 576
Score = 85 (35.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYT-----PVKVACV-VGGMSTEKQLRILNKCPHILVAT 1410
LI+ P+RELA Q I K+ P +C+ +GG+ + L ++++ HI+VAT
Sbjct: 257 LIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVAT 316
Query: 1411 PGAL 1414
PG L
Sbjct: 317 PGRL 320
Score = 37 (18.1 bits), Expect = 5.1e-32, Sum P(4) = 5.1e-32
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 401 RQTFVFSATL 410
RQT +FSAT+
Sbjct: 365 RQTLLFSATM 374
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 235 (87.8 bits), Expect = 9.1e-34, Sum P(3) = 9.1e-34
Identities = 65/213 (30%), Positives = 114/213 (53%)
Query: 1027 KRLQDL--LNIKSPKIVDLTE--KIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTL 1081
+ ++DL L++K P+ V + E K TL ++ ++C+ +K + LY F+ H + +
Sbjct: 259 RSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFLRSHLQKKII 318
Query: 1082 VFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
VF V+ L ++ L+ S L LH Q +R++ + F + +++L ATD+AAR
Sbjct: 319 VFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTSAVLFATDIAAR 378
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG-LTLVLIESDEIPLYIKMFNSLEK 1198
GLD P + V+ + P + YIHR GRTAR G LVL+ S+E + ++ EK
Sbjct: 379 GLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGMISQL---QEK 435
Query: 1199 KVDLPDFPIDESVLSLIKKRID--LAKSIEYLE 1229
KV + ++ L ++++++ LA+ E E
Sbjct: 436 KVPINKIQVNPEKLMSVQQKLEAFLAQEKEQKE 468
Score = 222 (83.2 bits), Expect = 3.9e-29, Sum P(5) = 3.9e-29
Identities = 56/170 (32%), Positives = 92/170 (54%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTE--KIGITKTLTESKILCKHDEKDSYLYYFILQH-PG 545
T ++DL L++K P+ V + E K TL ++ ++C+ +K + LY F+ H
Sbjct: 256 TQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFLRSHLQK 315
Query: 546 RTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+ +VF V+ L ++ L+ S L LH Q +R++ + F + +++L ATD+
Sbjct: 316 KIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTSAVLFATDI 375
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG-LTVVLIESDE 652
AARGLD P + V+ + P + YIHR GRTAR G +VL+ S+E
Sbjct: 376 AARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEE 425
Score = 158 (60.7 bits), Expect = 9.1e-34, Sum P(3) = 9.1e-34
Identities = 42/125 (33%), Positives = 69/125 (55%)
Query: 877 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 936
L ALI++PTRELA Q + GK V+GG + + +++ +I++ TPGR
Sbjct: 143 LGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESEKIHRT-NIIICTPGR 201
Query: 937 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
L + + + FH ++L+ LV+DE DR+++ G L I++ + + RQT +F
Sbjct: 202 LLQHMDETATFHASDLHM---LVLDEADRILDMGFADTLNAIVENLPKS-----RQTLLF 253
Query: 996 SATLT 1000
SAT T
Sbjct: 254 SATQT 258
Score = 140 (54.3 bits), Expect = 3.9e-29, Sum P(5) = 3.9e-29
Identities = 38/121 (31%), Positives = 66/121 (54%)
Query: 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGR 319
L ALI++PTRELA Q + GK V+GG + + +++ +I++ TPGR
Sbjct: 143 LGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESEKIHRT-NIIICTPGR 201
Query: 320 LWEFI-QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
L + + + FH ++L+ LV+DE DR+++ G L I++ + + RQT++
Sbjct: 202 LLQHMDETATFHASDLHM---LVLDEADRILDMGFADTLNAIVENLPKS-----RQTLLF 253
Query: 379 S 379
S
Sbjct: 254 S 254
Score = 119 (46.9 bits), Expect = 9.1e-34, Sum P(3) = 9.1e-34
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 769 EWVKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
E VKF+ + + ++ L + ++ PT+IQ + AL R D++GAA+TGSGKTLAF I
Sbjct: 68 EAVKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGR-DVLGAAKTGSGKTLAFLI 126
Query: 826 PIL 828
P+L
Sbjct: 127 PVL 129
Score = 119 (46.9 bits), Expect = 3.9e-29, Sum P(5) = 3.9e-29
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 152 EWVKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
E VKF+ + + ++ L + ++ PT+IQ + AL R D++GAA+TGSGKTLAF I
Sbjct: 68 EAVKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGR-DVLGAAKTGSGKTLAFLI 126
Query: 209 PIL 211
P+L
Sbjct: 127 PVL 129
Score = 69 (29.3 bits), Expect = 2.0e-16, Sum P(5) = 2.0e-16
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 1238 DNWLHRSGRTARANNEG-LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1296
+ ++HR GRTAR G LVL+ S+E + ++ EKKV + ++ L +++
Sbjct: 398 NTYIHRVGRTARYKEGGEALLVLLPSEEKGMISQL---QEKKVPINKIQVNPEKLMSVQQ 454
Query: 1297 RID--LAKSIEYLE 1308
+++ LA+ E E
Sbjct: 455 KLEAFLAQEKEQKE 468
Score = 69 (29.3 bits), Expect = 2.0e-16, Sum P(5) = 2.0e-16
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 438 KRLQDL--LNIKSPKIVDLTE--KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL- 492
+ ++DL L++K P+ V + E K TL ++ ++C+ +K + LY F+ H + +
Sbjct: 259 RSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFLRSHLQKKII 318
Query: 493 -----CEEIQDLLNI 502
C+E+Q L I
Sbjct: 319 VFFACCKEVQYLFRI 333
Score = 38 (18.4 bits), Expect = 3.9e-29, Sum P(5) = 3.9e-29
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 401 RQTFVFSATLT 411
RQT +FSAT T
Sbjct: 248 RQTLLFSATQT 258
Score = 37 (18.1 bits), Expect = 3.9e-29, Sum P(5) = 3.9e-29
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 1023 DPSIKRLQDLLNIKSPK---IVDLTEKIGITKTLTE 1055
D +R DLL +KS K I ++ I + L++
Sbjct: 583 DDDDQREADLLTVKSAKTHLIPEVNRSIQVESVLSQ 618
Score = 37 (18.1 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 434 DPSIKRLQDLLNIKSPK---IVDLTEKIGITKTLTE 466
D +R DLL +KS K I ++ I + L++
Sbjct: 583 DDDDQREADLLTVKSAKTHLIPEVNRSIQVESVLSQ 618
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 233 (87.1 bits), Expect = 9.4e-34, Sum P(3) = 9.4e-34
Identities = 71/231 (30%), Positives = 118/231 (51%)
Query: 1027 KRLQDLLNI---KSPKIV--DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 1080
++++DL I K P V D +++ L + ++C +++ L+ F+ ++ +
Sbjct: 359 RKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 418
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
+VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVAARG
Sbjct: 419 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARG 478
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLE 1197
LDIP ++ ++ Y P + YIHR GRTAR N G L+++ +E+ Y+K +
Sbjct: 479 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLK-----Q 533
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTA 1248
KV L F S +S I+ + LE I+KN +LH+S + A
Sbjct: 534 SKVPLNQFDFSWSKVSDIQSQ---------LEKLIEKNY---FLHKSAQEA 572
Score = 218 (81.8 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 53/170 (31%), Positives = 91/170 (53%)
Query: 491 TLCEEIQDLLNI---KSPKIV--DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-P 544
T +++DL I K P V D +++ L + ++C +++ L+ F+ ++
Sbjct: 356 TQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRK 415
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+ +VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVA
Sbjct: 416 KKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVA 475
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTVVLIESDEI 653
ARGLDIP ++ ++ Y P + YIHR GRTAR N G ++++ +E+
Sbjct: 476 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 525
Score = 152 (58.6 bits), Expect = 9.4e-34, Sum P(3) = 9.4e-34
Identities = 48/130 (36%), Positives = 69/130 (53%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
RN LIL+PTRELA+Q + + + ++GG + +++ L +I+VAT
Sbjct: 239 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIIVAT 298
Query: 934 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
PGRL L H T +YK + LVIDE DR+++ G ELK I+ + R
Sbjct: 299 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPAR-----R 348
Query: 991 QTFVFSATLT 1000
QT +FSAT T
Sbjct: 349 QTMLFSATQT 358
Score = 138 (53.6 bits), Expect = 2.7e-32, Sum P(3) = 2.7e-32
Identities = 47/147 (31%), Positives = 74/147 (50%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
RN LIL+PTRELA+Q + + + ++GG + +++ L +I+VAT
Sbjct: 239 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIIVAT 298
Query: 317 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
PGRL L H T +YK + LVIDE DR+++ G ELK I+ + R
Sbjct: 299 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPAR-----R 348
Query: 374 QTMIESGHFPELKNILDRVTMTETSQP 400
QTM+ S + + + D ++ +P
Sbjct: 349 QTMLFSA--TQTRKVEDLARISLKKEP 373
Score = 121 (47.7 bits), Expect = 9.4e-34, Sum P(3) = 9.4e-34
Identities = 45/130 (34%), Positives = 63/130 (48%)
Query: 93 ANTNDPDDQVNKTEEIQS--DEPSSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQM 150
AN PD + KTEE +EP + E DTS F +
Sbjct: 119 ANDAGPDTKKAKTEESAEACEEPEDDVKKADDSEVPSLPLGLTGAFE-DTS-----FASL 172
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ V E ++A+ + GFK T+IQ + P LL +D++ AA+TGSGKTLAF IP
Sbjct: 173 SNLVN----ENTLKAIEEMGFKRMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIP 226
Query: 210 ILTGIVNKLE 219
++ IV KL+
Sbjct: 227 VIELIV-KLK 235
Score = 121 (47.7 bits), Expect = 9.4e-34, Sum P(3) = 9.4e-34
Identities = 45/130 (34%), Positives = 63/130 (48%)
Query: 710 ANTNDPDDQVNKTEEIQS--DEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQM 767
AN PD + KTEE +EP + E DTS F +
Sbjct: 119 ANDAGPDTKKAKTEESAEACEEPEDDVKKADDSEVPSLPLGLTGAFE-DTS-----FASL 172
Query: 768 AEWVKFNIPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ V E ++A+ + GFK T+IQ + P LL +D++ AA+TGSGKTLAF IP
Sbjct: 173 SNLVN----ENTLKAIEEMGFKRMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIP 226
Query: 827 ILTGIVNKLE 836
++ IV KL+
Sbjct: 227 VIELIV-KLK 235
Score = 78 (32.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL+PTRELA+Q + + + ++GG + +++ L +I+VATPG L
Sbjct: 245 LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIIVATPGRL 302
Score = 75 (31.5 bits), Expect = 5.7e-17, Sum P(3) = 5.7e-17
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 1237 PDNWLHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLEKKVDLPDFPIDESVLSL 1293
P ++HR GRTAR N G L+++ +E+ Y+K + KV L F S +S
Sbjct: 496 PKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLK-----QSKVPLNQFDFSWSKVSD 550
Query: 1294 IKKRIDLAKSIE 1305
I+ +++ K IE
Sbjct: 551 IQSQLE--KLIE 560
Score = 40 (19.1 bits), Expect = 3.6e-22, Sum P(3) = 3.6e-22
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
+++ G ELK I+ + RQT +FSAT T
Sbjct: 328 ILDVGFEEELKQIIKLLPAR-----RQTMLFSATQT 358
Score = 39 (18.8 bits), Expect = 5.1e-15, Sum P(4) = 5.1e-15
Identities = 12/71 (16%), Positives = 34/71 (47%)
Query: 438 KRLQDLLNI---KSPKIV--DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
++++DL I K P V D +++ L + ++C +++ L+ F+ ++ + +
Sbjct: 359 RKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 418
Query: 493 CEEIQDLLNIK 503
+++K
Sbjct: 419 MVFFSSCMSVK 429
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 221 (82.9 bits), Expect = 9.8e-34, Sum P(3) = 9.8e-34
Identities = 56/168 (33%), Positives = 81/168 (48%)
Query: 1046 KIGITKTLTESKILCKHD--EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 1103
++G T +IL D +K + L +H G TL+F + +LT L M
Sbjct: 378 RVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFK 437
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
+H Q +R + L F+ IL+AT VAARGLDIP + HVI+Y +P + Y+H
Sbjct: 438 ATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVH 497
Query: 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDFPIDES 1210
R GRT RA N G+ S+ + + L E ++P F D S
Sbjct: 498 RIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 545
Score = 217 (81.4 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 50/141 (35%), Positives = 71/141 (50%)
Query: 513 KIGITKTLTESKILCKHD--EKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 570
++G T +IL D +K + L +H G TL+F + +LT L M
Sbjct: 378 RVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFK 437
Query: 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630
+H Q +R + L F+ IL+AT VAARGLDIP + HVI+Y +P + Y+H
Sbjct: 438 ATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVH 497
Query: 631 RSGRTARANNEGLTVVLIESD 651
R GRT RA N G+ S+
Sbjct: 498 RIGRTGRAGNTGVATSFFNSN 518
Score = 197 (74.4 bits), Expect = 9.8e-34, Sum P(3) = 9.8e-34
Identities = 50/123 (40%), Positives = 73/123 (59%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 935
AL+LAPTRELA Q+ +A K+T V+ V GG Q+R +++ +LVATPG
Sbjct: 240 ALVLAPTRELATQIFE---EARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPG 296
Query: 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995
RL + ++ G L I YLV+DE DRM++ G P++++I++ M RQT +F
Sbjct: 297 RLNDLLERGKVSLAN---IKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVEN-RQTLMF 352
Query: 996 SAT 998
SAT
Sbjct: 353 SAT 355
Score = 192 (72.6 bits), Expect = 3.2e-33, Sum P(3) = 3.2e-33
Identities = 49/125 (39%), Positives = 73/125 (58%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEKQLRILNKCPHILVATPG 318
AL+LAPTRELA Q+ +A K+T V+ V GG Q+R +++ +LVATPG
Sbjct: 240 ALVLAPTRELATQIFE---EARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPG 296
Query: 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378
RL + ++ G L I YLV+DE DRM++ G P++++I++ M RQT++
Sbjct: 297 RLNDLLERGKVSLAN---IKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVEN-RQTLMF 352
Query: 379 SGHFP 383
S FP
Sbjct: 353 SATFP 357
Score = 105 (42.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 39/97 (40%), Positives = 55/97 (56%)
Query: 1339 PNQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTP---VKVACVVGGMSTEK 1395
P + F SR Y AL+LAPTRELA Q+ +A K+T V+ V GG
Sbjct: 225 PEKAQSFYSRK-GYP-SALVLAPTRELATQIFE---EARKFTYRSWVRPCVVYGGAPIGN 279
Query: 1396 QLRILNKCPHILVATPGALS--LKR--IDLAKSIEYL 1428
Q+R +++ +LVATPG L+ L+R + LA +I+YL
Sbjct: 280 QMREVDRGCDLLVATPGRLNDLLERGKVSLA-NIKYL 315
Score = 87 (35.7 bits), Expect = 9.8e-34, Sum P(3) = 9.8e-34
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
N + + VD S +D+ + ++ + E ++ + F PT +Q +P R D
Sbjct: 136 NYDNIPVDASG-KDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGR-D 193
Query: 192 IVGAAETGSGKTLAFGIPILTGIVNKLENP 221
++ A+TGSGKT F P+ T + +P
Sbjct: 194 LMACAQTGSGKTGGFLFPLFTELFRSGPSP 223
Score = 87 (35.7 bits), Expect = 9.8e-34, Sum P(3) = 9.8e-34
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
N + + VD S +D+ + ++ + E ++ + F PT +Q +P R D
Sbjct: 136 NYDNIPVDASG-KDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGR-D 193
Query: 809 IVGAAETGSGKTLAFGIPILTGIVNKLENP 838
++ A+TGSGKT F P+ T + +P
Sbjct: 194 LMACAQTGSGKTGGFLFPLFTELFRSGPSP 223
Score = 65 (27.9 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDFPIDES 1289
D+++HR GRT RA N G+ S+ + + L E ++P F D S
Sbjct: 493 DDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 545
Score = 59 (25.8 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P++++I++ M RQT +FSAT
Sbjct: 323 MLDMGFEPQIRHIVEECDMPSVEN-RQTLMFSAT 355
Score = 37 (18.1 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 1250 ANNEGLTLVLIES 1262
A ++GLTL+ +E+
Sbjct: 408 AEHKGLTLIFVET 420
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 201 (75.8 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 50/149 (33%), Positives = 83/149 (55%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA Q++ + + ++ C GG+ Q+ L + HIL+A PGRL +
Sbjct: 190 LVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLID 249
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ ++T L ++ YLV+DE D+M++ G +++ I+D++ RQT++ S +
Sbjct: 250 LLEQ---NVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR-----PDRQTLMWSATW 301
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLT 411
P+ L + E QP Q V S TLT
Sbjct: 302 PKEVQALAKDLCKE--QPIQVNVGSLTLT 328
Score = 190 (71.9 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 41/119 (34%), Positives = 71/119 (59%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA Q++ + + ++ C GG+ Q+ L + HIL+A PGRL +
Sbjct: 190 LVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLID 249
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
++ ++T L ++ YLV+DE D+M++ G +++ I+D++ RQT ++SAT
Sbjct: 250 LLEQ---NVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR-----PDRQTLMWSAT 300
Score = 181 (68.8 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 41/131 (31%), Positives = 70/131 (53%)
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I + R +VF + + +T+ L + L +H Q +R L+ F+ + I++
Sbjct: 356 IFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMI 415
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL---Y 1189
ATDVA+RGLDI +++VI++ P E Y+HR GRT RA + G + + +D+ L
Sbjct: 416 ATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDL 475
Query: 1190 IKMFNSLEKKV 1200
+K+ E+ V
Sbjct: 476 VKILRESEQPV 486
Score = 181 (68.8 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 485 LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY--LYYFILQ 542
+Q + LC+E +N+ S + LT I + E +L +H++ + L I +
Sbjct: 305 VQALAKDLCKEQPIQVNVGS---LTLTACRSIKQ---EIYLLEEHEKIGNLKSLLQRIFK 358
Query: 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 602
R +VF + + +T+ L + L +H Q +R L+ F+ + I++ATD
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATD 418
Query: 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
VA+RGLDI +++VI++ P E Y+HR GRT RA + G + + +D+ L
Sbjct: 419 VASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRL 471
Score = 120 (47.3 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
K P+ +I++L PT IQ P AL + KD++G AETGSGKTLAF +P I
Sbjct: 117 KIGFPDYVIKSLKNNNIVAPTPIQIQGWPIAL-SGKDMIGKAETGSGKTLAFILPAFVHI 175
Query: 215 V 215
+
Sbjct: 176 L 176
Score = 120 (47.3 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
K P+ +I++L PT IQ P AL + KD++G AETGSGKTLAF +P I
Sbjct: 117 KIGFPDYVIKSLKNNNIVAPTPIQIQGWPIAL-SGKDMIGKAETGSGKTLAFILPAFVHI 175
Query: 832 V 832
+
Sbjct: 176 L 176
Score = 73 (30.8 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 22/90 (24%), Positives = 49/90 (54%)
Query: 1197 EKKVDLPDFPIDESVLSL---IKKR-IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANN 1252
E++ L +F +S + + + R +D+ K+++Y+ + N+ ++++HR GRT RA +
Sbjct: 398 ERRWVLNEFKTGKSPIMIATDVASRGLDI-KNVKYVINFDFPNQIEDYVHRIGRTGRAGS 456
Query: 1253 EGLTLVLIESDEIPL---YIKMFNSLEKKV 1279
G + + +D+ L +K+ E+ V
Sbjct: 457 HGASFTFLTADKYRLAKDLVKILRESEQPV 486
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 201 (75.8 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 50/149 (33%), Positives = 83/149 (55%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA Q++ + + ++ C GG+ Q+ L + HIL+A PGRL +
Sbjct: 190 LVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLID 249
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
++ ++T L ++ YLV+DE D+M++ G +++ I+D++ RQT++ S +
Sbjct: 250 LLEQ---NVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR-----PDRQTLMWSATW 301
Query: 383 PELKNILDRVTMTETSQPRQTFVFSATLT 411
P+ L + E QP Q V S TLT
Sbjct: 302 PKEVQALAKDLCKE--QPIQVNVGSLTLT 328
Score = 190 (71.9 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 41/119 (34%), Positives = 71/119 (59%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA Q++ + + ++ C GG+ Q+ L + HIL+A PGRL +
Sbjct: 190 LVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLID 249
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
++ ++T L ++ YLV+DE D+M++ G +++ I+D++ RQT ++SAT
Sbjct: 250 LLEQ---NVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR-----PDRQTLMWSAT 300
Score = 181 (68.8 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 41/131 (31%), Positives = 70/131 (53%)
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I + R +VF + + +T+ L + L +H Q +R L+ F+ + I++
Sbjct: 356 IFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMI 415
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL---Y 1189
ATDVA+RGLDI +++VI++ P E Y+HR GRT RA + G + + +D+ L
Sbjct: 416 ATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDL 475
Query: 1190 IKMFNSLEKKV 1200
+K+ E+ V
Sbjct: 476 VKILRESEQPV 486
Score = 181 (68.8 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 485 LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY--LYYFILQ 542
+Q + LC+E +N+ S + LT I + E +L +H++ + L I +
Sbjct: 305 VQALAKDLCKEQPIQVNVGS---LTLTACRSIKQ---EIYLLEEHEKIGNLKSLLQRIFK 358
Query: 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 602
R +VF + + +T+ L + L +H Q +R L+ F+ + I++ATD
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATD 418
Query: 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
VA+RGLDI +++VI++ P E Y+HR GRT RA + G + + +D+ L
Sbjct: 419 VASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRL 471
Score = 120 (47.3 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
K P+ +I++L PT IQ P AL + KD++G AETGSGKTLAF +P I
Sbjct: 117 KIGFPDYVIKSLKNNNIVAPTPIQIQGWPIAL-SGKDMIGKAETGSGKTLAFILPAFVHI 175
Query: 215 V 215
+
Sbjct: 176 L 176
Score = 120 (47.3 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
K P+ +I++L PT IQ P AL + KD++G AETGSGKTLAF +P I
Sbjct: 117 KIGFPDYVIKSLKNNNIVAPTPIQIQGWPIAL-SGKDMIGKAETGSGKTLAFILPAFVHI 175
Query: 832 V 832
+
Sbjct: 176 L 176
Score = 73 (30.8 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 22/90 (24%), Positives = 49/90 (54%)
Query: 1197 EKKVDLPDFPIDESVLSL---IKKR-IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANN 1252
E++ L +F +S + + + R +D+ K+++Y+ + N+ ++++HR GRT RA +
Sbjct: 398 ERRWVLNEFKTGKSPIMIATDVASRGLDI-KNVKYVINFDFPNQIEDYVHRIGRTGRAGS 456
Query: 1253 EGLTLVLIESDEIPL---YIKMFNSLEKKV 1279
G + + +D+ L +K+ E+ V
Sbjct: 457 HGASFTFLTADKYRLAKDLVKILRESEQPV 486
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 224 (83.9 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 50/119 (42%), Positives = 73/119 (61%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA QVQ + GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 173 LVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 232
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT ++SAT
Sbjct: 233 FLEAGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 283
Score = 221 (82.9 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 50/129 (38%), Positives = 78/129 (60%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA QVQ + GK + +K C+ GG Q+R L + I +ATPGRL +
Sbjct: 173 LVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 232
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
F++ G T L + YLV+DE DRM++ G P+++ I+D++ RQT++ S +
Sbjct: 233 FLEAGK---TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQTLMWSATW 284
Query: 383 P-ELKNILD 390
P E++ + +
Sbjct: 285 PKEVRQLAE 293
Score = 169 (64.5 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 39/115 (33%), Positives = 62/115 (53%)
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K D+ L + + +T++F + LT+ + + +H NQ++R L
Sbjct: 327 KEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVL 386
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
+ F+ IL+ATDVA+RGLD+ ++ VI++ P SE YIHR GRTAR+ G
Sbjct: 387 NEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTG 441
Score = 169 (64.5 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 39/115 (33%), Positives = 62/115 (53%)
Query: 528 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587
K D+ L + + +T++F + LT+ + + +H NQ++R L
Sbjct: 327 KEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVL 386
Query: 588 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
+ F+ IL+ATDVA+RGLD+ ++ VI++ P SE YIHR GRTAR+ G
Sbjct: 387 NEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTG 441
Score = 123 (48.4 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+LAPTRELA QVQ + GK + +K C+ GG Q+R L + I +ATPG L
Sbjct: 173 LVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 230
Score = 111 (44.1 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 154 VKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
VKF N P+ ++ + ++ + PT IQ+ P AL + KD+VG A+TGSGKTL++ +P
Sbjct: 96 VKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVAL-SGKDMVGIAQTGSGKTLSYLLPA 154
Query: 211 LTGI 214
+ I
Sbjct: 155 IVHI 158
Score = 111 (44.1 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 771 VKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
VKF N P+ ++ + ++ + PT IQ+ P AL + KD+VG A+TGSGKTL++ +P
Sbjct: 96 VKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVAL-SGKDMVGIAQTGSGKTLSYLLPA 154
Query: 828 LTGI 831
+ I
Sbjct: 155 IVHI 158
Score = 54 (24.1 bits), Expect = 9.2e-22, Sum P(3) = 9.2e-22
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 1235 NRPDNWLHRSGRTARANNEG 1254
N ++++HR GRTAR+ G
Sbjct: 422 NNSEDYIHRIGRTARSQKTG 441
Score = 48 (22.0 bits), Expect = 3.8e-15, Sum P(3) = 3.8e-15
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+D++ RQT ++SAT
Sbjct: 255 MLDMGFEPQIRKIVDQIR-----PDRQTLMWSAT 283
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 315 (115.9 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 97/326 (29%), Positives = 154/326 (47%)
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKC 926
+F K + + LIL+PTRELA+Q++ IL+ K ++V C GG S E Q+ L K
Sbjct: 360 QFSKDNQGPI-GLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKG 418
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 986
I+V TPGR+ + + + L + ++V+DE DRM + G P++ IL T+
Sbjct: 419 VEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL-----TQI 473
Query: 987 SQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKI---VDL 1043
RQT +FSAT DP + + + ++ +P+I V L
Sbjct: 474 RPDRQTVLFSATFPRKMETLAKQILT----------DPVVIIVGGI-SVVAPEIKQEVVL 522
Query: 1044 TEKIGITKTLTESKILCK-HDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLK 1101
E + + + + K HD +Y ++HP + LVF + L L K
Sbjct: 523 FETSAEEQDKYKQQRVEKLHDILTNYQ----IEHPDSKILVFTEKQNDADELVANLLSNK 578
Query: 1102 CSPLPLHASMNQRQRLKNLDRFR--DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
+ +H +Q R + F D +IL+AT +AARGLD+ + VI++ P E
Sbjct: 579 YPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHME 638
Query: 1160 IYIHRSGRTARANNEGLTLVLIESDE 1185
Y+HR GRT RA +G + + S +
Sbjct: 639 DYVHRVGRTGRAGAKGNAITFVSSSQ 664
Score = 207 (77.9 bits), Expect = 6.2e-22, Sum P(3) = 6.2e-22
Identities = 50/147 (34%), Positives = 79/147 (53%)
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKC 309
+F K + + LIL+PTRELA+Q++ IL+ K ++V C GG S E Q+ L K
Sbjct: 360 QFSKDNQGPI-GLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKG 418
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
I+V TPGR+ + + + L + ++V+DE DRM + G P++ IL T+
Sbjct: 419 VEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL-----TQI 473
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTE 396
RQT++ S FP L + +T+
Sbjct: 474 RPDRQTVLFSATFPRKMETLAKQILTD 500
Score = 171 (65.3 bits), Expect = 3.7e-14, Sum P(4) = 3.7e-14
Identities = 61/237 (25%), Positives = 112/237 (47%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
++KR ++ ++ ++ DL + + K LT+ + ++ + L+ TL ++
Sbjct: 442 NLKRCTFVVLDEADRMFDLGFEPQVNKILTQIR-----PDRQTVLFSATFPRKMETLAKQ 496
Query: 496 I-QD--LLNIKSPKIV--DLTEKIGITKTLTESKILCKHD--EK-DSYLYYFILQHP-GR 546
I D ++ + +V ++ +++ + +T E + K EK L + ++HP +
Sbjct: 497 ILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIEHPDSK 556
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR--DQNNSILLATDVA 604
LVF + L L K + +H +Q R + F D +IL+AT +A
Sbjct: 557 ILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIA 616
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661
ARGLD+ + VI++ P E Y+HR GRT RA +G + + S + P K FNL
Sbjct: 617 ARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQ-P-KEVFNL 671
Score = 122 (48.0 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 134 ELLEVDTSN----NEDMFVQMAEWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLA 188
EL+ D N D+ + +W +P + ++ K F+ P+ IQS +P+ +L+
Sbjct: 272 ELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPT-ILS 330
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGI 214
+D++G A+TGSGKTL++ +P+L I
Sbjct: 331 GRDVIGIAKTGSGKTLSYVLPMLRHI 356
Score = 122 (48.0 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 751 ELLEVDTSN----NEDMFVQMAEWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLA 805
EL+ D N D+ + +W +P + ++ K F+ P+ IQS +P+ +L+
Sbjct: 272 ELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPT-ILS 330
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGI 831
+D++G A+TGSGKTL++ +P+L I
Sbjct: 331 GRDVIGIAKTGSGKTLSYVLPMLRHI 356
Score = 121 (47.7 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
LIL+PTRELA+Q++ IL+ K ++V C GG S E Q+ L K I+V TPG
Sbjct: 371 LILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPG 427
Score = 70 (29.7 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRT RA +G + + S + P ++FN L K + L ID + +
Sbjct: 635 NHMEDYVHRVGRTGRAGAKGNAITFVSSSQ-PK--EVFN-LVKALKLSHSDIDPKLEEIA 690
Query: 1295 KKRIDLAKS 1303
K + K+
Sbjct: 691 NKFVTKVKA 699
Score = 49 (22.3 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 331 LTELYKINYLVIDETDRMIE--SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
+ EL K +++ R+I+ + + + N L R T + + M + G P++ I
Sbjct: 412 INELKKGVEIIVGTPGRVIDLLAANSGRVLN-LKRCTFVVLDEADR-MFDLGFEPQVNKI 469
Query: 389 LDRVTMTETSQPRQTFVFSAT 409
L T+ RQT +FSAT
Sbjct: 470 L-----TQIRPDRQTVLFSAT 485
Score = 43 (20.2 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 590
+++ +T+ +T++K L +NQR+ L+ R+
Sbjct: 848 TLQSVTEAITLIKKKMLESLDILNQRENLQPTGRY 882
Score = 43 (20.2 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
+++ +T+ +T++K L +NQR+ L+ R+
Sbjct: 848 TLQSVTEAITLIKKKMLESLDILNQRENLQPTGRY 882
Score = 39 (18.8 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 1458 IQPKANSRENALMSKALVSKRKELQSLLGKSVQSYQ 1493
I PK N ++K K K GK + + Q
Sbjct: 682 IDPKLEEIANKFVTKVKAGKEKISSGFGGKGLDNLQ 717
Score = 37 (18.1 bits), Expect = 7.5e-25, Sum P(3) = 7.5e-25
Identities = 38/139 (27%), Positives = 58/139 (41%)
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI-Q 497
RLQDL++ K K+ + +++ +++ S+ + K Y + L E I Q
Sbjct: 220 RLQDLISTKLTKLQNKGKEL---QSIDHSQENYQEFRKVFYREAYELSALSDEQVELIRQ 276
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCK--HD----EKDSYLYYFILQH--PGRTLV 549
DL NIK K D+ I L L HD EK S + L GR ++
Sbjct: 277 DLDNIKV-KGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVI 335
Query: 550 FCNSISSVKRLTQLLTMLK 568
S K L+ +L ML+
Sbjct: 336 GIAKTGSGKTLSYVLPMLR 354
Score = 37 (18.1 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 392 VTMTETSQPRQTF--VFSATLTH 412
+T +SQP++ F V + L+H
Sbjct: 657 ITFVSSSQPKEVFNLVKALKLSH 679
Score = 37 (18.1 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 981 VTMTETSQPRQTF--VFSATLTH 1001
+T +SQP++ F V + L+H
Sbjct: 657 ITFVSSSQPKEVFNLVKALKLSH 679
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 315 (115.9 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 97/326 (29%), Positives = 154/326 (47%)
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKC 926
+F K + + LIL+PTRELA+Q++ IL+ K ++V C GG S E Q+ L K
Sbjct: 360 QFSKDNQGPI-GLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKG 418
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 986
I+V TPGR+ + + + L + ++V+DE DRM + G P++ IL T+
Sbjct: 419 VEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL-----TQI 473
Query: 987 SQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKI---VDL 1043
RQT +FSAT DP + + + ++ +P+I V L
Sbjct: 474 RPDRQTVLFSATFPRKMETLAKQILT----------DPVVIIVGGI-SVVAPEIKQEVVL 522
Query: 1044 TEKIGITKTLTESKILCK-HDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLK 1101
E + + + + K HD +Y ++HP + LVF + L L K
Sbjct: 523 FETSAEEQDKYKQQRVEKLHDILTNYQ----IEHPDSKILVFTEKQNDADELVANLLSNK 578
Query: 1102 CSPLPLHASMNQRQRLKNLDRFR--DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
+ +H +Q R + F D +IL+AT +AARGLD+ + VI++ P E
Sbjct: 579 YPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHME 638
Query: 1160 IYIHRSGRTARANNEGLTLVLIESDE 1185
Y+HR GRT RA +G + + S +
Sbjct: 639 DYVHRVGRTGRAGAKGNAITFVSSSQ 664
Score = 207 (77.9 bits), Expect = 6.2e-22, Sum P(3) = 6.2e-22
Identities = 50/147 (34%), Positives = 79/147 (53%)
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKC 309
+F K + + LIL+PTRELA+Q++ IL+ K ++V C GG S E Q+ L K
Sbjct: 360 QFSKDNQGPI-GLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKG 418
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 369
I+V TPGR+ + + + L + ++V+DE DRM + G P++ IL T+
Sbjct: 419 VEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL-----TQI 473
Query: 370 SQPRQTMIESGHFPELKNILDRVTMTE 396
RQT++ S FP L + +T+
Sbjct: 474 RPDRQTVLFSATFPRKMETLAKQILTD 500
Score = 171 (65.3 bits), Expect = 3.7e-14, Sum P(4) = 3.7e-14
Identities = 61/237 (25%), Positives = 112/237 (47%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEE 495
++KR ++ ++ ++ DL + + K LT+ + ++ + L+ TL ++
Sbjct: 442 NLKRCTFVVLDEADRMFDLGFEPQVNKILTQIR-----PDRQTVLFSATFPRKMETLAKQ 496
Query: 496 I-QD--LLNIKSPKIV--DLTEKIGITKTLTESKILCKHD--EK-DSYLYYFILQHP-GR 546
I D ++ + +V ++ +++ + +T E + K EK L + ++HP +
Sbjct: 497 ILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIEHPDSK 556
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR--DQNNSILLATDVA 604
LVF + L L K + +H +Q R + F D +IL+AT +A
Sbjct: 557 ILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIA 616
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661
ARGLD+ + VI++ P E Y+HR GRT RA +G + + S + P K FNL
Sbjct: 617 ARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQ-P-KEVFNL 671
Score = 122 (48.0 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 134 ELLEVDTSN----NEDMFVQMAEWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLA 188
EL+ D N D+ + +W +P + ++ K F+ P+ IQS +P+ +L+
Sbjct: 272 ELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPT-ILS 330
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGI 214
+D++G A+TGSGKTL++ +P+L I
Sbjct: 331 GRDVIGIAKTGSGKTLSYVLPMLRHI 356
Score = 122 (48.0 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 751 ELLEVDTSN----NEDMFVQMAEWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLA 805
EL+ D N D+ + +W +P + ++ K F+ P+ IQS +P+ +L+
Sbjct: 272 ELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPT-ILS 330
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGI 831
+D++G A+TGSGKTL++ +P+L I
Sbjct: 331 GRDVIGIAKTGSGKTLSYVLPMLRHI 356
Score = 121 (47.7 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
LIL+PTRELA+Q++ IL+ K ++V C GG S E Q+ L K I+V TPG
Sbjct: 371 LILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPG 427
Score = 70 (29.7 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1294
N ++++HR GRT RA +G + + S + P ++FN L K + L ID + +
Sbjct: 635 NHMEDYVHRVGRTGRAGAKGNAITFVSSSQ-PK--EVFN-LVKALKLSHSDIDPKLEEIA 690
Query: 1295 KKRIDLAKS 1303
K + K+
Sbjct: 691 NKFVTKVKA 699
Score = 49 (22.3 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 331 LTELYKINYLVIDETDRMIE--SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
+ EL K +++ R+I+ + + + N L R T + + M + G P++ I
Sbjct: 412 INELKKGVEIIVGTPGRVIDLLAANSGRVLN-LKRCTFVVLDEADR-MFDLGFEPQVNKI 469
Query: 389 LDRVTMTETSQPRQTFVFSAT 409
L T+ RQT +FSAT
Sbjct: 470 L-----TQIRPDRQTVLFSAT 485
Score = 43 (20.2 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 590
+++ +T+ +T++K L +NQR+ L+ R+
Sbjct: 848 TLQSVTEAITLIKKKMLESLDILNQRENLQPTGRY 882
Score = 43 (20.2 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 1123
+++ +T+ +T++K L +NQR+ L+ R+
Sbjct: 848 TLQSVTEAITLIKKKMLESLDILNQRENLQPTGRY 882
Score = 39 (18.8 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 1458 IQPKANSRENALMSKALVSKRKELQSLLGKSVQSYQ 1493
I PK N ++K K K GK + + Q
Sbjct: 682 IDPKLEEIANKFVTKVKAGKEKISSGFGGKGLDNLQ 717
Score = 37 (18.1 bits), Expect = 7.5e-25, Sum P(3) = 7.5e-25
Identities = 38/139 (27%), Positives = 58/139 (41%)
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI-Q 497
RLQDL++ K K+ + +++ +++ S+ + K Y + L E I Q
Sbjct: 220 RLQDLISTKLTKLQNKGKEL---QSIDHSQENYQEFRKVFYREAYELSALSDEQVELIRQ 276
Query: 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCK--HD----EKDSYLYYFILQH--PGRTLV 549
DL NIK K D+ I L L HD EK S + L GR ++
Sbjct: 277 DLDNIKV-KGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVI 335
Query: 550 FCNSISSVKRLTQLLTMLK 568
S K L+ +L ML+
Sbjct: 336 GIAKTGSGKTLSYVLPMLR 354
Score = 37 (18.1 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 392 VTMTETSQPRQTF--VFSATLTH 412
+T +SQP++ F V + L+H
Sbjct: 657 ITFVSSSQPKEVFNLVKALKLSH 679
Score = 37 (18.1 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 981 VTMTETSQPRQTF--VFSATLTH 1001
+T +SQP++ F V + L+H
Sbjct: 657 ITFVSSSQPKEVFNLVKALKLSH 679
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 207 (77.9 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 57/199 (28%), Positives = 94/199 (47%)
Query: 1047 IGITKTLTESKILCKHDEKDSYLYYFI--LQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 1104
+G T+ +T+ ++K+SYL ++ L+ G L+F + S LT L
Sbjct: 472 VGTTQNITQRIEYVVEEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPT 531
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
+H + Q +R L FR L+ATD+A+RGL I + VI++ +P IY+HR
Sbjct: 532 TCIHGDLTQPERENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHR 591
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLE-KKVDLPDFPIDESVLSL-IKKRIDLA 1222
GRT RA +GL + P+ ++ ++ D+PD+ ++ V +L + K +
Sbjct: 592 IGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQDIPDW-FEKMVHNLRMSKGPSNS 650
Query: 1223 KSIEYLESKIKK--NRPDN 1239
KS NR DN
Sbjct: 651 KSNSPFNKSYNSHHNRDDN 669
Score = 195 (73.7 bits), Expect = 3.3e-32, Sum P(3) = 3.3e-32
Identities = 45/144 (31%), Positives = 71/144 (49%)
Query: 514 IGITKTLTESKILCKHDEKDSYLYYFI--LQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
+G T+ +T+ ++K+SYL ++ L+ G L+F + S LT L
Sbjct: 472 VGTTQNITQRIEYVVEEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPT 531
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 631
+H + Q +R L FR L+ATD+A+RGL I + VI++ +P IY+HR
Sbjct: 532 TCIHGDLTQPERENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHR 591
Query: 632 SGRTARANNEGLTVVLIESDEIPL 655
GRT RA +GL + P+
Sbjct: 592 IGRTGRAGKKGLAISFFNEKNKPV 615
Score = 194 (73.4 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 48/120 (40%), Positives = 68/120 (56%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
AL+LAPTRELA Q+ + +PV + GG Q+ L++ ILVAT GRL
Sbjct: 333 ALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLV 392
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ + G L+ KI YLV+DE DRM++ G P+++ I+ M + RQT +FSAT
Sbjct: 393 DLLMRGRVSLS---KIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGC-RDRQTLMFSAT 448
Score = 193 (73.0 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 48/128 (37%), Positives = 73/128 (57%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
AL+LAPTRELA Q+ + +PV + GG Q+ L++ ILVAT GRL
Sbjct: 333 ALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLV 392
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ + G L+ KI YLV+DE DRM++ G P+++ I+ M + RQT++ S
Sbjct: 393 DLLMRGRVSLS---KIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGC-RDRQTLMFSAT 448
Query: 382 FP-ELKNI 388
FP +++N+
Sbjct: 449 FPKQIQNL 456
Score = 107 (42.7 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 20/79 (25%), Positives = 43/79 (54%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
++ +E + + + ++ + ++ + + PT +Q +P +L +D++ A
Sbjct: 233 DISIETSEHICAPLNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALP-IILKNRDLMACA 291
Query: 197 ETGSGKTLAFGIPILTGIV 215
+TGSGKT AF PI++GI+
Sbjct: 292 QTGSGKTAAFLFPIISGIL 310
Score = 107 (42.7 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 20/79 (25%), Positives = 43/79 (54%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
++ +E + + + ++ + ++ + + PT +Q +P +L +D++ A
Sbjct: 233 DISIETSEHICAPLNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALP-IILKNRDLMACA 291
Query: 814 ETGSGKTLAFGIPILTGIV 832
+TGSGKT AF PI++GI+
Sbjct: 292 QTGSGKTAAFLFPIISGIL 310
Score = 99 (39.9 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 40/140 (28%), Positives = 59/140 (42%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
AL+LAPTRELA Q+ + +PV + GG Q+ L++ ILVAT G L
Sbjct: 333 ALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRL- 391
Query: 1416 LKRIDLAKSIEYLESKIKK---NRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSK 1472
+DL SKIK + D L+ + E P R+ + S
Sbjct: 392 ---VDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISE-FDMPGCRDRQTLMFSA 447
Query: 1473 ALVSKRKELQSLLGKSVQSY 1492
K++Q+L + +Y
Sbjct: 448 TFP---KQIQNLAADFLYNY 464
Score = 67 (28.6 bits), Expect = 1.6e-18, Sum P(4) = 1.6e-18
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE-KKVDLPDFPIDESVLSL-IKKR 1297
++HR GRT RA +GL + P+ ++ ++ D+PD+ ++ V +L + K
Sbjct: 588 YVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQDIPDW-FEKMVHNLRMSKG 646
Query: 1298 IDLAKSIEYLESKIKK--NRPDN 1318
+KS NR DN
Sbjct: 647 PSNSKSNSPFNKSYNSHHNRDDN 669
Score = 54 (24.1 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+ M + RQT +FSAT
Sbjct: 416 MLDMGFEPQIRQIISEFDMPGC-RDRQTLMFSAT 448
Score = 39 (18.8 bits), Expect = 1.6e-18, Sum P(4) = 1.6e-18
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493
+G T+ +T+ ++K+SYL ++ LC
Sbjct: 472 VGTTQNITQRIEYVVEEDKNSYLLDYLSGLKSDGLC 507
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 215 (80.7 bits), Expect = 1.3e-33, Sum P(4) = 1.3e-33
Identities = 55/142 (38%), Positives = 82/142 (57%)
Query: 257 RNKLY--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
R K Y +L+LAPTRELA+Q+ + V+ V GG T +Q+R L + H+LV
Sbjct: 261 RRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLV 320
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + ++ G L + K YLV+DE DRM++ G P+++ I+++ TM R
Sbjct: 321 ATPGRLVDMMERGKIGL-DFCK--YLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RH 376
Query: 375 TMIESGHFPELKNILDRVTMTE 396
TM+ S FP+ +L R + E
Sbjct: 377 TMMFSATFPKEIQMLARDFLDE 398
Score = 213 (80.0 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 52/127 (40%), Positives = 76/127 (59%)
Query: 874 RNKLY--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
R K Y +L+LAPTRELA+Q+ + V+ V GG T +Q+R L + H+LV
Sbjct: 261 RRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLV 320
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + ++ G L + K YLV+DE DRM++ G P+++ I+++ TM R
Sbjct: 321 ATPGRLVDMMERGKIGL-DFCK--YLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RH 376
Query: 992 TFVFSAT 998
T +FSAT
Sbjct: 377 TMMFSAT 383
Score = 194 (73.4 bits), Expect = 6.4e-33, Sum P(3) = 6.4e-33
Identities = 51/165 (30%), Positives = 84/165 (50%)
Query: 1046 KIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGR---TLVFCNSISSVKRLTQLLTMLK 1101
++G T + +T+ + + +K S+L +L G+ TLVF + L L +
Sbjct: 406 RVGSTSENITQKVVWVEELDKRSFLLD-LLNATGKDSLTLVFVETKKGADSLENFLFQER 464
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
+ +H +Q+ R + L +FR IL+AT VAARGLDI ++HVI++ +P E Y
Sbjct: 465 YACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEY 524
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDF 1205
+HR GRT R N GL + + + + L E K ++P +
Sbjct: 525 VHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSW 569
Score = 190 (71.9 bits), Expect = 1.3e-33, Sum P(4) = 1.3e-33
Identities = 53/158 (33%), Positives = 82/158 (51%)
Query: 491 TLCEEIQDLLNIKSPKIVDLTE-KIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGR-- 546
T +EIQ L + + L ++G T + +T+ + + +K S+L +L G+
Sbjct: 383 TFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLD-LLNATGKDS 441
Query: 547 -TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
TLVF + L L + + +H +Q+ R + L +FR IL+AT VAA
Sbjct: 442 LTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAA 501
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
RGLDI ++HVI++ +P E Y+HR GRT R N GL
Sbjct: 502 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 539
Score = 121 (47.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 38/138 (27%), Positives = 65/138 (47%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+L+LAPTRELA+Q+ + V+ V GG T +Q+R L + H+LVATPG L
Sbjct: 268 SLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRL- 326
Query: 1416 LKRIDLAK-SIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
+ ++ K +++ + + + D L+ + ++ + PK R + S
Sbjct: 327 VDMMERGKIGLDFCKYLVL-DEADRMLDMGFEPQIRRIVEQDTMPPKG-VRHTMMFSATF 384
Query: 1475 VSKRKELQSLLGKSVQSY 1492
KE+Q L + Y
Sbjct: 385 P---KEIQMLARDFLDEY 399
Score = 90 (36.7 bits), Expect = 1.3e-33, Sum P(4) = 1.3e-33
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ PT +Q +P + ++D++ A+TGSGKT AF +PIL+ I
Sbjct: 199 YTRPTPVQKHAIP-IIKEKRDLMACAQTGSGKTAAFLLPILSQI 241
Score = 90 (36.7 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ PT +Q +P + ++D++ A+TGSGKT AF +PIL+ I
Sbjct: 199 YTRPTPVQKHAIP-IIKEKRDLMACAQTGSGKTAAFLLPILSQI 241
Score = 55 (24.4 bits), Expect = 1.3e-33, Sum P(4) = 1.3e-33
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDF 1284
+ ++HR GRT R N GL + + + + L E K ++P +
Sbjct: 522 EEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSW 569
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 221 (82.9 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 475
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 476 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 535
Query: 1181 IES--DEIPLYIKMFNSLEKKVDLP 1203
I DE L LE K +P
Sbjct: 536 INKACDESVLMDLKALLLEAKQKVP 560
Score = 218 (81.8 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 528 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 475
Query: 588 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 476 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 535
Query: 648 I 648
I
Sbjct: 536 I 536
Score = 162 (62.1 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 44/128 (34%), Positives = 66/128 (51%)
Query: 878 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 259 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 318
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 319 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 370
Query: 992 TFVFSATL 999
T +FSAT+
Sbjct: 371 TLLFSATM 378
Score = 151 (58.2 bits), Expect = 8.5e-32, Sum P(4) = 8.5e-32
Identities = 42/130 (32%), Positives = 65/130 (50%)
Query: 261 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 259 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 318
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 319 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 370
Query: 375 TMIESGHFPE 384
T++ S P+
Sbjct: 371 TLLFSATMPK 380
Score = 121 (47.7 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ +P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 185 EMKLPAAILRGLKKKGILHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 240
Score = 121 (47.7 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ +P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 185 EMKLPAAILRGLKKKGILHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 240
Score = 91 (37.1 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 1337 IQPNQLLIFESRNLRYSWDALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGG 1390
++ + L F R Y LI+ P+RELA Q +L ++ A +GG
Sbjct: 244 LEQEKRLPFSKREGPYG---LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 300
Query: 1391 MSTEKQLRILNKCPHILVATPGAL 1414
MS ++Q+ + H++VATPG L
Sbjct: 301 MSVKEQMETIRHGVHMMVATPGRL 324
Score = 64 (27.6 bits), Expect = 5.0e-17, Sum P(3) = 5.0e-17
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIES--DEIPLYIKMFNSLEKKVDLP 1282
+N++HR GRT R+ N G+ I DE L LE K +P
Sbjct: 514 ENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 560
Score = 37 (18.1 bits), Expect = 8.5e-32, Sum P(4) = 8.5e-32
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 401 RQTFVFSATL 410
RQT +FSAT+
Sbjct: 369 RQTLLFSATM 378
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 221 (82.9 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 475
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 476 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 535
Query: 1181 IES--DEIPLYIKMFNSLEKKVDLP 1203
I DE L LE K +P
Sbjct: 536 INKACDESVLMDLKALLLEAKQKVP 560
Score = 218 (81.8 bits), Expect = 2.3e-31, Sum P(4) = 2.3e-31
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 528 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 475
Query: 588 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 476 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 535
Query: 648 I 648
I
Sbjct: 536 I 536
Score = 162 (62.1 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 44/128 (34%), Positives = 66/128 (51%)
Query: 878 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 259 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 318
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 319 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 370
Query: 992 TFVFSATL 999
T +FSAT+
Sbjct: 371 TLLFSATM 378
Score = 151 (58.2 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 42/130 (32%), Positives = 65/130 (50%)
Query: 261 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 259 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 318
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 319 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 370
Query: 375 TMIESGHFPE 384
T++ S P+
Sbjct: 371 TLLFSATMPK 380
Score = 120 (47.3 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 185 EMKFPAAILRGLKKKGIHHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 240
Score = 120 (47.3 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 185 EMKFPAAILRGLKKKGIHHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 240
Score = 91 (37.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 1337 IQPNQLLIFESRNLRYSWDALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGG 1390
++ + L F R Y LI+ P+RELA Q +L ++ A +GG
Sbjct: 244 LEQEKRLPFSKREGPYG---LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 300
Query: 1391 MSTEKQLRILNKCPHILVATPGAL 1414
MS ++Q+ + H++VATPG L
Sbjct: 301 MSVKEQMETIRHGVHMMVATPGRL 324
Score = 64 (27.6 bits), Expect = 6.3e-17, Sum P(3) = 6.3e-17
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIES--DEIPLYIKMFNSLEKKVDLP 1282
+N++HR GRT R+ N G+ I DE L LE K +P
Sbjct: 514 ENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 560
Score = 37 (18.1 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 401 RQTFVFSATL 410
RQT +FSAT+
Sbjct: 369 RQTLLFSATM 378
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 221 (82.9 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 475
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 476 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 535
Query: 1181 IES--DEIPLYIKMFNSLEKKVDLP 1203
I DE L LE K +P
Sbjct: 536 INKACDESVLMDLKALLLEAKQKVP 560
Score = 218 (81.8 bits), Expect = 2.3e-31, Sum P(4) = 2.3e-31
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 528 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 475
Query: 588 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 476 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 535
Query: 648 I 648
I
Sbjct: 536 I 536
Score = 162 (62.1 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 44/128 (34%), Positives = 66/128 (51%)
Query: 878 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 259 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 318
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 319 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 370
Query: 992 TFVFSATL 999
T +FSAT+
Sbjct: 371 TLLFSATM 378
Score = 151 (58.2 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 42/130 (32%), Positives = 65/130 (50%)
Query: 261 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 259 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 318
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 319 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 370
Query: 375 TMIESGHFPE 384
T++ S P+
Sbjct: 371 TLLFSATMPK 380
Score = 120 (47.3 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 185 EMKFPAAILRGLKKKGIHHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 240
Score = 120 (47.3 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 185 EMKFPAAILRGLKKKGIHHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 240
Score = 91 (37.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 1337 IQPNQLLIFESRNLRYSWDALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGG 1390
++ + L F R Y LI+ P+RELA Q +L ++ A +GG
Sbjct: 244 LEQEKRLPFSKREGPYG---LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 300
Query: 1391 MSTEKQLRILNKCPHILVATPGAL 1414
MS ++Q+ + H++VATPG L
Sbjct: 301 MSVKEQMETIRHGVHMMVATPGRL 324
Score = 64 (27.6 bits), Expect = 6.3e-17, Sum P(3) = 6.3e-17
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIES--DEIPLYIKMFNSLEKKVDLP 1282
+N++HR GRT R+ N G+ I DE L LE K +P
Sbjct: 514 ENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 560
Score = 37 (18.1 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 401 RQTFVFSATL 410
RQT +FSAT+
Sbjct: 369 RQTLLFSATM 378
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 221 (82.9 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 475
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 476 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 535
Query: 1181 IES--DEIPLYIKMFNSLEKKVDLP 1203
I DE L LE K +P
Sbjct: 536 INKACDESVLMDLKALLLEAKQKVP 560
Score = 218 (81.8 bits), Expect = 2.3e-31, Sum P(4) = 2.3e-31
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 528 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 475
Query: 588 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 476 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 535
Query: 648 I 648
I
Sbjct: 536 I 536
Score = 162 (62.1 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 44/128 (34%), Positives = 66/128 (51%)
Query: 878 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 259 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 318
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 319 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 370
Query: 992 TFVFSATL 999
T +FSAT+
Sbjct: 371 TLLFSATM 378
Score = 151 (58.2 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 42/130 (32%), Positives = 65/130 (50%)
Query: 261 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 259 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 318
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 319 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 370
Query: 375 TMIESGHFPE 384
T++ S P+
Sbjct: 371 TLLFSATMPK 380
Score = 120 (47.3 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 185 EMKFPAAILRGLKKKGIHHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 240
Score = 120 (47.3 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 185 EMKFPAAILRGLKKKGIHHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 240
Score = 91 (37.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 1337 IQPNQLLIFESRNLRYSWDALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGG 1390
++ + L F R Y LI+ P+RELA Q +L ++ A +GG
Sbjct: 244 LEQEKRLPFSKREGPYG---LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 300
Query: 1391 MSTEKQLRILNKCPHILVATPGAL 1414
MS ++Q+ + H++VATPG L
Sbjct: 301 MSVKEQMETIRHGVHMMVATPGRL 324
Score = 64 (27.6 bits), Expect = 6.3e-17, Sum P(3) = 6.3e-17
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIES--DEIPLYIKMFNSLEKKVDLP 1282
+N++HR GRT R+ N G+ I DE L LE K +P
Sbjct: 514 ENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 560
Score = 37 (18.1 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 401 RQTFVFSATL 410
RQT +FSAT+
Sbjct: 369 RQTLLFSATM 378
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 225 (84.3 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 56/185 (30%), Positives = 95/185 (51%)
Query: 1024 PSIKRLQDLLNIKSPKIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFI--LQHPGRT 1080
P ++RL +K P +V + T + T+ ++ + + DEK Y++ FI ++ +
Sbjct: 468 PGVRRLAKSY-LKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHRMEPLDKV 526
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
L+F L+ L + + LH Q R + L F+D IL+ATD+A+RG
Sbjct: 527 LIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLASRG 586
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK- 1199
LD+ I HV +Y PR E Y+HR GRT RA G ++ L+ ++ + ++ LE+
Sbjct: 587 LDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELITILERSG 646
Query: 1200 VDLPD 1204
D+P+
Sbjct: 647 QDVPE 651
Score = 211 (79.3 bits), Expect = 5.7e-32, Sum P(3) = 5.7e-32
Identities = 50/154 (32%), Positives = 80/154 (51%)
Query: 502 IKSPKIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFI--LQHPGRTLVFCNSISSVK 558
+K P +V + T + T+ ++ + + DEK Y++ FI ++ + L+F
Sbjct: 478 LKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHRMEPLDKVLIFVGKKLKAD 537
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
L+ L + + LH Q R + L F+D IL+ATD+A+RGLD+ I HV +
Sbjct: 538 DLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFN 597
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
Y PR E Y+HR GRT RA G +V L+ ++
Sbjct: 598 YDFPRNVEEYVHRVGRTGRAGRSGESVTLVTRED 631
Score = 176 (67.0 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 45/125 (36%), Positives = 68/125 (54%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
RN L+L PTRELA+Q++ + Y K C+ GG Q++++ I++AT
Sbjct: 350 RNGPGMLVLTPTRELALQIEAEC-NKYSYKGFKSICIYGGGDRNAQIKVVTSGVDIVIAT 408
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRL + +Q+ L L I YLV+DE DRM++ G P++ I+ + RQT
Sbjct: 409 PGRLND-LQMNE--LINLRSITYLVLDEADRMLDMGFEPQIMKII-----LDIRPDRQTV 460
Query: 994 VFSAT 998
+ SAT
Sbjct: 461 MTSAT 465
Score = 176 (67.0 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 44/127 (34%), Positives = 69/127 (54%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
RN L+L PTRELA+Q++ + Y K C+ GG Q++++ I++AT
Sbjct: 350 RNGPGMLVLTPTRELALQIEAEC-NKYSYKGFKSICIYGGGDRNAQIKVVTSGVDIVIAT 408
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGRL + +Q+ L L I YLV+DE DRM++ G P++ I+ + RQT+
Sbjct: 409 PGRLND-LQMNE--LINLRSITYLVLDEADRMLDMGFEPQIMKII-----LDIRPDRQTV 460
Query: 377 IESGHFP 383
+ S +P
Sbjct: 461 MTSATWP 467
Score = 109 (43.4 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 1348 RNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 1407
R+ R L+L PTRELA+Q++ + Y K C+ GG Q++++ I+
Sbjct: 347 RDKRNGPGMLVLTPTRELALQIEAEC-NKYSYKGFKSICIYGGGDRNAQIKVVTSGVDIV 405
Query: 1408 VATPGALS-LKRIDLA--KSIEYL 1428
+ATPG L+ L+ +L +SI YL
Sbjct: 406 IATPGRLNDLQMNELINLRSITYL 429
Score = 105 (42.0 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
I E I+R GFK PT IQS P +L D++G A+TG+GKTLA+ +P
Sbjct: 289 IMENIVRV----GFKKPTPIQSQAWP-VVLNGIDLIGIAQTGTGKTLAYLLP 335
Score = 105 (42.0 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
I E I+R GFK PT IQS P +L D++G A+TG+GKTLA+ +P
Sbjct: 289 IMENIVRV----GFKKPTPIQSQAWP-VVLNGIDLIGIAQTGTGKTLAYLLP 335
Score = 65 (27.9 bits), Expect = 4.3e-18, Sum P(4) = 4.3e-18
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK-VDLPD 1283
+ ++HR GRT RA G ++ L+ ++ + ++ LE+ D+P+
Sbjct: 605 EEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELITILERSGQDVPE 651
Score = 57 (25.1 bits), Expect = 4.3e-18, Sum P(4) = 4.3e-18
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 435 PSIKRLQDLLNIKSPKIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFI 484
P ++RL +K P +V + T + T+ ++ + + DEK Y++ FI
Sbjct: 468 PGVRRLAKSY-LKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFI 517
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 224 (83.9 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 57/140 (40%), Positives = 82/140 (58%)
Query: 254 KKTRNKLY--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311
K R K Y +L+LAPTRELA+Q+ + + V+ V GG +Q+R L + H
Sbjct: 291 KYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCH 350
Query: 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 371
+LVATPGRL + ++ G L Y NYLV+DE DRM++ G P+++ I+++ TM
Sbjct: 351 LLVATPGRLLDMMERGKIGLD--Y-CNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGL 407
Query: 372 PRQTMIESGHFPELKNILDR 391
RQTM+ S FP+ IL R
Sbjct: 408 -RQTMMFSATFPKEIQILAR 426
Score = 220 (82.5 bits), Expect = 4.7e-33, Sum P(3) = 4.7e-33
Identities = 54/130 (41%), Positives = 78/130 (60%)
Query: 871 KKTRNKLY--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928
K R K Y +L+LAPTRELA+Q+ + + V+ V GG +Q+R L + H
Sbjct: 291 KYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCH 350
Query: 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 988
+LVATPGRL + ++ G L Y NYLV+DE DRM++ G P+++ I+++ TM
Sbjct: 351 LLVATPGRLLDMMERGKIGLD--Y-CNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGL 407
Query: 989 PRQTFVFSAT 998
RQT +FSAT
Sbjct: 408 -RQTMMFSAT 416
Score = 189 (71.6 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 48/135 (35%), Positives = 73/135 (54%)
Query: 513 KIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGR---TLVFCNSISSVKRLTQLLTMLK 568
++G T + +T+ + + ++K S+L +L G+ TLVF + L L
Sbjct: 439 RVGSTSENITQKVVWVEENDKRSFLLD-LLNATGKDSLTLVFVETKKGADALEDFLYREG 497
Query: 569 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628
+ +H +QR R + L +FR IL+AT VAARGLDI ++HVI++ +P E Y
Sbjct: 498 YACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEY 557
Query: 629 IHRSGRTARANNEGL 643
+HR GRT R N GL
Sbjct: 558 VHRIGRTGRVGNLGL 572
Score = 189 (71.6 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 48/135 (35%), Positives = 73/135 (54%)
Query: 1046 KIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGR---TLVFCNSISSVKRLTQLLTMLK 1101
++G T + +T+ + + ++K S+L +L G+ TLVF + L L
Sbjct: 439 RVGSTSENITQKVVWVEENDKRSFLLD-LLNATGKDSLTLVFVETKKGADALEDFLYREG 497
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
+ +H +QR R + L +FR IL+AT VAARGLDI ++HVI++ +P E Y
Sbjct: 498 YACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEY 557
Query: 1162 IHRSGRTARANNEGL 1176
+HR GRT R N GL
Sbjct: 558 VHRIGRTGRVGNLGL 572
Score = 124 (48.7 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 39/138 (28%), Positives = 66/138 (47%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+L+LAPTRELA+Q+ + + V+ V GG +Q+R L + H+LVATPG L
Sbjct: 301 SLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL- 359
Query: 1416 LKRIDLAK-SIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
L ++ K ++Y + + D L+ + ++ + PK R+ + S
Sbjct: 360 LDMMERGKIGLDYCNYLVL-DEADRMLDMGFEPQIRRIVEQDTMPPKG-LRQTMMFSATF 417
Query: 1475 VSKRKELQSLLGKSVQSY 1492
KE+Q L ++ Y
Sbjct: 418 P---KEIQILARDFLEDY 432
Score = 92 (37.4 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 160 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
E I+ + + PT +Q +P + +++D++ A+TGSGKT AF +P+L+ I
Sbjct: 217 EIIMGNINLSRYTRPTPVQKHAIP-IIKSKRDLMACAQTGSGKTAAFLLPVLSQI 270
Score = 92 (37.4 bits), Expect = 4.7e-33, Sum P(3) = 4.7e-33
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
E I+ + + PT +Q +P + +++D++ A+TGSGKT AF +P+L+ I
Sbjct: 217 EIIMGNINLSRYTRPTPVQKHAIP-IIKSKRDLMACAQTGSGKTAAFLLPVLSQI 270
Score = 59 (25.8 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P+++ I+++ TM RQT +FSAT
Sbjct: 384 MLDMGFEPQIRRIVEQDTMPPKGL-RQTMMFSAT 416
Score = 50 (22.7 bits), Expect = 3.9e-19, Sum P(3) = 3.9e-19
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1238 DNWLHRSGRTARANNEGL 1255
+ ++HR GRT R N GL
Sbjct: 555 EEYVHRIGRTGRVGNLGL 572
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 204 (76.9 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 58/195 (29%), Positives = 95/195 (48%)
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVF 1083
SI+ + + ++K PK V + K + ++ +L D+K S + + ++ ++F
Sbjct: 193 SIRAIAER-HLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDALIMF 251
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
+ + L L L+ + Q QR + +D +D I++ATDVAARGLD+
Sbjct: 252 VRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARGLDV 311
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
P I HV + +P E Y+HR GRT RA EG L+L+ E + + +KV
Sbjct: 312 PRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKVAEV 371
Query: 1204 DFPIDESVLSL-IKK 1217
P ++VL IKK
Sbjct: 372 RLPDAQAVLDARIKK 386
Score = 199 (75.1 bits), Expect = 4.7e-32, Sum P(3) = 4.7e-32
Identities = 50/165 (30%), Positives = 83/165 (50%)
Query: 491 TLCEEIQDLL--NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRT 547
TL + I+ + ++K PK V + K + ++ +L D+K S + + ++
Sbjct: 189 TLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDAL 248
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++F + + L L L+ + Q QR + +D +D I++ATDVAARG
Sbjct: 249 IMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARG 308
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
LD+P I HV + +P E Y+HR GRT RA EG ++L+ E
Sbjct: 309 LDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRE 353
Score = 185 (70.2 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 52/131 (39%), Positives = 71/131 (54%)
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPH 928
+ ++ + ALILAPTRELA+QV K P V V V GG QL+ +
Sbjct: 68 IDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 127
Query: 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 988
I+VATPGRL + ++ L +N+LV+DE D M++ G +L+ I M ET
Sbjct: 128 IVVATPGRLCDHLRRDE---KVLATVNHLVLDEADEMLKLGFMDDLEVIFK--AMPET-- 180
Query: 989 PRQTFVFSATL 999
RQT +FSATL
Sbjct: 181 -RQTVLFSATL 190
Score = 177 (67.4 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 55/161 (34%), Positives = 81/161 (50%)
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPH 311
+ ++ + ALILAPTRELA+QV K P V V V GG QL+ +
Sbjct: 68 IDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 127
Query: 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ 371
I+VATPGRL + ++ L +N+LV+DE D M++ G +L+ I M ET
Sbjct: 128 IVVATPGRLCDHLRRDE---KVLATVNHLVLDEADEMLKLGFMDDLEVIFK--AMPET-- 180
Query: 372 PRQTMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATLT 411
RQT++ S P+ ++ I +R P+ + S T T
Sbjct: 181 -RQTVLFSATLPQSIRAIAER----HLKDPKHVKIQSKTQT 216
Score = 112 (44.5 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 146 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205
M ++ + + I+ A+ G++ P+ IQ +P +LA D++G A+TG+GKT A
Sbjct: 1 MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIP-IILAGHDMIGQAQTGTGKTAA 59
Query: 206 FGIPIL 211
F +PIL
Sbjct: 60 FALPIL 65
Score = 112 (44.5 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 763 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822
M ++ + + I+ A+ G++ P+ IQ +P +LA D++G A+TG+GKT A
Sbjct: 1 MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIP-IILAGHDMIGQAQTGTGKTAA 59
Query: 823 FGIPIL 828
F +PIL
Sbjct: 60 FALPIL 65
Score = 111 (44.1 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 29/60 (48%), Positives = 33/60 (55%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALILAPTRELA+QV K P V V V GG QL+ + I+VATPG L
Sbjct: 77 ALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRL 136
Score = 81 (33.6 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 37/137 (27%), Positives = 65/137 (47%)
Query: 1194 NSLEKKVD-LPDFPIDESVLSLIKKR-IDLAKSIEYLESKIKKNRPDNWLHRSGRTARAN 1251
N E+ +D L D +D V + + R +D+ + I ++ + P++++HR GRT RA
Sbjct: 282 NQRERVIDSLKDGRLDIVVATDVAARGLDVPR-ITHVFNVDMPYDPESYVHRIGRTGRAG 340
Query: 1252 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSL-IKKRIDLAKSIEYLESK 1310
EG L+L+ E + + +KV P ++VL IKK L S+ L +
Sbjct: 341 REGRALLLVTPRERRMLQVIERVTGQKVAEVRLPDAQAVLDARIKK---LTNSLSPLVAD 397
Query: 1311 IKKNRPDNWLEKAAKDM 1327
+ D L++ D+
Sbjct: 398 AEATHGD-LLDRLTADI 413
Score = 43 (20.2 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 478
SI+ + + ++K PK V + K + ++ +L D+K S
Sbjct: 193 SIRAIAER-HLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTS 234
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 221 (82.9 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 434 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 493
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 494 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 553
Query: 1181 IES--DEIPLYIKMFNSLEKKVDLP 1203
I DE L LE K +P
Sbjct: 554 INKACDESVLMDLKALLLEAKQKVP 578
Score = 218 (81.8 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 528 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 434 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 493
Query: 588 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 494 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 553
Query: 648 I 648
I
Sbjct: 554 I 554
Score = 162 (62.1 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 44/128 (34%), Positives = 66/128 (51%)
Query: 878 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 277 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 336
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 337 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 388
Query: 992 TFVFSATL 999
T +FSAT+
Sbjct: 389 TLLFSATM 396
Score = 151 (58.2 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 42/130 (32%), Positives = 65/130 (50%)
Query: 261 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 277 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 336
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 337 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 388
Query: 375 TMIESGHFPE 384
T++ S P+
Sbjct: 389 TLLFSATMPK 398
Score = 120 (47.3 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 203 EMKFPAAILRGLKKKGIHHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 258
Score = 120 (47.3 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 203 EMKFPAAILRGLKKKGIHHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 258
Score = 91 (37.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 1337 IQPNQLLIFESRNLRYSWDALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGG 1390
++ + L F R Y LI+ P+RELA Q +L ++ A +GG
Sbjct: 262 LEQEKRLPFSKREGPYG---LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 318
Query: 1391 MSTEKQLRILNKCPHILVATPGAL 1414
MS ++Q+ + H++VATPG L
Sbjct: 319 MSVKEQMETIRHGVHMMVATPGRL 342
Score = 64 (27.6 bits), Expect = 7.1e-17, Sum P(3) = 7.1e-17
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIES--DEIPLYIKMFNSLEKKVDLP 1282
+N++HR GRT R+ N G+ I DE L LE K +P
Sbjct: 532 ENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 578
Score = 37 (18.1 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 401 RQTFVFSATL 410
RQT +FSAT+
Sbjct: 387 RQTLLFSATM 396
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 233 (87.1 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 71/231 (30%), Positives = 118/231 (51%)
Query: 1027 KRLQDLLNI---KSPKIV--DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 1080
++++DL I K P V D +++ L + ++C +++ L+ F+ ++ +
Sbjct: 361 RKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 420
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
+VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVAARG
Sbjct: 421 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARG 480
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLE 1197
LDIP ++ ++ Y P + YIHR GRTAR N G L+++ +E+ Y+K +
Sbjct: 481 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLK-----Q 535
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTA 1248
KV L F S +S I+ + LE I+KN +LH+S + A
Sbjct: 536 SKVPLNQFDFSWSKVSDIQSQ---------LEKLIEKNY---FLHKSAQEA 574
Score = 218 (81.8 bits), Expect = 3.2e-30, Sum P(3) = 3.2e-30
Identities = 53/170 (31%), Positives = 91/170 (53%)
Query: 491 TLCEEIQDLLNI---KSPKIV--DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-P 544
T +++DL I K P V D +++ L + ++C +++ L+ F+ ++
Sbjct: 358 TQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRK 417
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+ +VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVA
Sbjct: 418 KKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVA 477
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTVVLIESDEI 653
ARGLDIP ++ ++ Y P + YIHR GRTAR N G ++++ +E+
Sbjct: 478 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 527
Score = 151 (58.2 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 48/130 (36%), Positives = 69/130 (53%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
RN LIL+PTRELA+Q + + + ++GG + +++ L +I+VAT
Sbjct: 241 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVAT 300
Query: 934 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
PGRL L H T +YK + LVIDE DR+++ G ELK I+ + R
Sbjct: 301 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPAR-----R 350
Query: 991 QTFVFSATLT 1000
QT +FSAT T
Sbjct: 351 QTMLFSATQT 360
Score = 137 (53.3 bits), Expect = 7.0e-32, Sum P(3) = 7.0e-32
Identities = 47/147 (31%), Positives = 74/147 (50%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
RN LIL+PTRELA+Q + + + ++GG + +++ L +I+VAT
Sbjct: 241 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVAT 300
Query: 317 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
PGRL L H T +YK + LVIDE DR+++ G ELK I+ + R
Sbjct: 301 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPAR-----R 350
Query: 374 QTMIESGHFPELKNILDRVTMTETSQP 400
QTM+ S + + + D ++ +P
Sbjct: 351 QTMLFSA--TQTRKVEDLARISLKKEP 375
Score = 119 (46.9 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 41/127 (32%), Positives = 62/127 (48%)
Query: 711 NTNDPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQMAEW 770
N +PD + KTEE E + + L V + + F ++
Sbjct: 120 NDTEPDPKKAKTEE--GTEARAGEEPEDGVKEADDSEVPSLPLGVTGAFEDTSFASLSNL 177
Query: 771 VKFNIPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
V E ++A+ + GFK T+IQ + P LL +D++ AA+TGSGKTLAF IP++
Sbjct: 178 VN----ENTLKAIEEMGFKHMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPVIE 231
Query: 830 GIVNKLE 836
IV KL+
Sbjct: 232 LIV-KLK 237
Score = 118 (46.6 bits), Expect = 2.5e-33, Sum P(3) = 2.5e-33
Identities = 41/127 (32%), Positives = 62/127 (48%)
Query: 94 NTNDPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQMAEW 153
N +PD + KTEE E + + L V + + F ++
Sbjct: 120 NDTEPDPKKAKTEE--GTEARAGEEPEDGVKEADDSEVPSLPLGVTGAFEDTSFASLSNL 177
Query: 154 VKFNIPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
V E ++A+ + GFK T+IQ + P LL +D++ AA+TGSGKTLAF IP++
Sbjct: 178 VN----ENTLKAIEEMGFKHMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPVIE 231
Query: 213 GIVNKLE 219
IV KL+
Sbjct: 232 LIV-KLK 237
Score = 77 (32.2 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL+PTRELA+Q + + + ++GG + +++ L +I+VATPG L
Sbjct: 247 LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVATPGRL 304
Score = 75 (31.5 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 1237 PDNWLHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLEKKVDLPDFPIDESVLSL 1293
P ++HR GRTAR N G L+++ +E+ Y+K + KV L F S +S
Sbjct: 498 PKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLK-----QSKVPLNQFDFSWSKVSD 552
Query: 1294 IKKRIDLAKSIE 1305
I+ +++ K IE
Sbjct: 553 IQSQLE--KLIE 562
Score = 40 (19.1 bits), Expect = 7.4e-22, Sum P(3) = 7.4e-22
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
+++ G ELK I+ + RQT +FSAT T
Sbjct: 330 ILDVGFEEELKQIIKLLPAR-----RQTMLFSATQT 360
Score = 39 (18.8 bits), Expect = 1.3e-14, Sum P(4) = 1.3e-14
Identities = 12/71 (16%), Positives = 34/71 (47%)
Query: 438 KRLQDLLNI---KSPKIV--DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
++++DL I K P V D +++ L + ++C +++ L+ F+ ++ + +
Sbjct: 361 RKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 420
Query: 493 CEEIQDLLNIK 503
+++K
Sbjct: 421 MVFFSSCMSVK 431
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 324 (119.1 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 96/328 (29%), Positives = 153/328 (46%)
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 936
YA+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPGR
Sbjct: 457 YAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGR 515
Query: 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996
L + ++ + L+ + Y+V+DE DRMI+ G P+++ IL+ + +T +Q T
Sbjct: 516 LIDVLENRYLVLS---RCTYVVLDEADRMIDMGFEPDVQKILEYIPVT--NQKPDTDDAE 570
Query: 997 ATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 1056
P+++RL ++ P +V + G E
Sbjct: 571 DPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSY-LRRPAVVYIGSA-GKPHERVEQ 628
Query: 1057 K-ILCKHDEKDSYLYYFILQ--HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
K IL EK L + P ++F N L + L + + LH Q
Sbjct: 629 KVILMSEGEKRKKLLEVLASGFEPP-IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQ 687
Query: 1114 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
QR L + IL+ATDVA RG+DI + V++Y + + E YIHR GRT RA
Sbjct: 688 EQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGK 747
Query: 1174 EGLTLVLIESDEIPLYIKMFNS-LEKKV 1200
G+ + + ++ ++ + + LE V
Sbjct: 748 SGVAMTFLTKEDSSVFYDLKQAILESPV 775
Score = 203 (76.5 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 53/151 (35%), Positives = 87/151 (57%)
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGR 319
YA+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPGR
Sbjct: 457 YAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGR 515
Query: 320 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
L + ++ + L+ + Y+V+DE DRMI+ G P+++ IL+ + +T +Q T +
Sbjct: 516 LIDVLENRYLVLS---RCTYVVLDEADRMIDMGFEPDVQKILEYIPVT--NQKPDT--DD 568
Query: 380 GHFPELKNILDRVTMTETSQPRQTFVFSATL 410
PE ++ + RQT +F+AT+
Sbjct: 569 AEDPE--KMMQNFESGKHKY-RQTVMFTATM 596
Score = 156 (60.0 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 34/105 (32%), Positives = 52/105 (49%)
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
++F N L + L + + LH Q QR L + IL+ATDVA RG
Sbjct: 655 IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRG 714
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+DI + V++Y + + E YIHR GRT RA G+ + + ++
Sbjct: 715 IDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKED 759
Score = 143 (55.4 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 59/234 (25%), Positives = 103/234 (44%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W ++++P I+ + + G+K PT IQ +P L R DI+G AETGSGKT AF IP+L
Sbjct: 380 WKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIPLLV 438
Query: 830 GIVNKLENPTXXXXXXXXXXXXXXXXXXXXXXXSANTTEFVKKTRNKLYALILAPTRE-- 887
I + T +F K + A+I +RE
Sbjct: 439 WITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 498
Query: 888 -LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
+++ I+ A TP ++ V+ E + +L++C ++++ R+ I +G F
Sbjct: 499 GFRLRMGCEIVIA---TPGRLIDVL-----ENRYLVLSRCTYVVLDEADRM---IDMG-F 546
Query: 947 HLTELYKI-NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
++ KI Y+ + + PE ++ + RQT +F+AT+
Sbjct: 547 E-PDVQKILEYIPVTNQKPDTDDAEDPE--KMMQNFESGKHKY-RQTVMFTATM 596
Score = 141 (54.7 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
W ++++P I+ + + G+K PT IQ +P L R DI+G AETGSGKT AF IP+L
Sbjct: 380 WKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIPLLV 438
Query: 213 GI 214
I
Sbjct: 439 WI 440
Score = 120 (47.3 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ-LRILNKCPHILVATPGAL 1414
A+ILAPTRELA Q++ + GK ++ V+GG+S E Q R+ C I++ATPG L
Sbjct: 458 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGRL 516
Score = 64 (27.6 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS-LEK 1277
ID+ L + KN D ++HR GRT RA G+ + + ++ ++ + + LE
Sbjct: 715 IDIQDVSMVLNYDMAKNIED-YIHRIGRTGRAGKSGVAMTFLTKEDSSVFYDLKQAILES 773
Query: 1278 KV 1279
V
Sbjct: 774 PV 775
Score = 37 (18.1 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 87 EVSELSANTNDPDDQVNKTEE 107
E E N ND DD+ K E
Sbjct: 206 ERMERENNGNDDDDERQKIRE 226
Score = 37 (18.1 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGR 634
P +E + ++ R + +YI +G+
Sbjct: 598 PAVERLARSYLRRPAVVYIGSAGK 621
Score = 37 (18.1 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 577 SMNQRQRLKNLDRFRDQN 594
S ++ +RLK+ DR RD++
Sbjct: 57 SPDRDRRLKDKDRDRDRS 74
Score = 37 (18.1 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 704 EVSELSANTNDPDDQVNKTEE 724
E E N ND DD+ K E
Sbjct: 206 ERMERENNGNDDDDERQKIRE 226
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 215 (80.7 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 56/158 (35%), Positives = 82/158 (51%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFIL-QHPGR 546
T +EIQ L +K I ++G T E ++L ++ EK S L ++ +H
Sbjct: 340 TFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSEN 399
Query: 547 -TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
LVF + L L + + +H + Q +R +NL+ FR IL+AT VAA
Sbjct: 400 LVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAA 459
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
RGLDIP + HVI+Y +P S+ Y+HR GRT R N G+
Sbjct: 460 RGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGI 497
Score = 210 (79.0 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 49/134 (36%), Positives = 73/134 (54%)
Query: 1046 KIGITKTLTESKILCKHD-EKDSYLYYFIL-QHPGR-TLVFCNSISSVKRLTQLLTMLKC 1102
++G T E ++L ++ EK S L ++ +H LVF + L L +
Sbjct: 364 RVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQI 423
Query: 1103 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162
+ +H + Q +R +NL+ FR IL+AT VAARGLDIP + HVI+Y +P S+ Y+
Sbjct: 424 RSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYV 483
Query: 1163 HRSGRTARANNEGL 1176
HR GRT R N G+
Sbjct: 484 HRIGRTGRCGNLGI 497
Score = 186 (70.5 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 46/121 (38%), Positives = 69/121 (57%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK-QLRILNKCPHILVATPGRL 937
AL+L+PTRELAIQ+ + ++ A + GG + Q+ L HIL+ATPGRL
Sbjct: 225 ALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRL 284
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+ I+ G L YLV+DE DRM++ G P+++ I+ + +T+ R T +FSA
Sbjct: 285 IDIIEQGFIGLAGC---RYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTA--RTTAMFSA 339
Query: 998 T 998
T
Sbjct: 340 T 340
Score = 182 (69.1 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 46/129 (35%), Positives = 71/129 (55%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK-QLRILNKCPHILVATPGRL 320
AL+L+PTRELAIQ+ + ++ A + GG + Q+ L HIL+ATPGRL
Sbjct: 225 ALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRL 284
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
+ I+ G L YLV+DE DRM++ G P+++ I+ + +T+ R T + S
Sbjct: 285 IDIIEQGFIGLAGC---RYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTA--RTTAMFSA 339
Query: 381 HFPELKNIL 389
FP+ +L
Sbjct: 340 TFPKEIQVL 348
Score = 107 (42.7 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
++ + + G+ PT +Q +P+ LLA +D++ A+TGSGKT AF +PI+ I+
Sbjct: 150 VMENVNRSGYSKPTPVQKHSIPT-LLANRDLMSCAQTGSGKTAAFLLPIIQHIL 202
Score = 107 (42.7 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
++ + + G+ PT +Q +P+ LLA +D++ A+TGSGKT AF +PI+ I+
Sbjct: 150 VMENVNRSGYSKPTPVQKHSIPT-LLANRDLMSCAQTGSGKTAAFLLPIIQHIL 202
Score = 103 (41.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK-QLRILNKCPHILVATPGAL 1414
AL+L+PTRELAIQ+ + ++ A + GG + Q+ L HIL+ATPG L
Sbjct: 225 ALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRL 284
Score = 52 (23.4 bits), Expect = 7.5e-17, Sum P(3) = 7.5e-17
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1238 DNWLHRSGRTARANNEGL 1255
D ++HR GRT R N G+
Sbjct: 480 DEYVHRIGRTGRCGNLGI 497
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 221 (82.9 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 443 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 502
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 503 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 562
Query: 1181 IES--DEIPLYIKMFNSLEKKVDLP 1203
I DE L LE K +P
Sbjct: 563 INKACDESVLMDLKALLLEAKQKVP 587
Score = 218 (81.8 bits), Expect = 3.2e-31, Sum P(4) = 3.2e-31
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 528 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 443 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 502
Query: 588 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 503 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 562
Query: 648 I 648
I
Sbjct: 563 I 563
Score = 162 (62.1 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 44/128 (34%), Positives = 66/128 (51%)
Query: 878 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 286 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 345
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 346 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 397
Query: 992 TFVFSATL 999
T +FSAT+
Sbjct: 398 TLLFSATM 405
Score = 151 (58.2 bits), Expect = 1.5e-31, Sum P(4) = 1.5e-31
Identities = 42/130 (32%), Positives = 65/130 (50%)
Query: 261 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 286 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 345
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 346 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 397
Query: 375 TMIESGHFPE 384
T++ S P+
Sbjct: 398 TLLFSATMPK 407
Score = 120 (47.3 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 212 EMKFPAAILRGLKKKGIHHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 267
Score = 120 (47.3 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 212 EMKFPAAILRGLKKKGIHHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 267
Score = 91 (37.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 1337 IQPNQLLIFESRNLRYSWDALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGG 1390
++ + L F R Y LI+ P+RELA Q +L ++ A +GG
Sbjct: 271 LEQEKRLPFSKREGPYG---LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 327
Query: 1391 MSTEKQLRILNKCPHILVATPGAL 1414
MS ++Q+ + H++VATPG L
Sbjct: 328 MSVKEQMETIRHGVHMMVATPGRL 351
Score = 64 (27.6 bits), Expect = 7.6e-17, Sum P(3) = 7.6e-17
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIES--DEIPLYIKMFNSLEKKVDLP 1282
+N++HR GRT R+ N G+ I DE L LE K +P
Sbjct: 541 ENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 587
Score = 37 (18.1 bits), Expect = 1.5e-31, Sum P(4) = 1.5e-31
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 401 RQTFVFSATL 410
RQT +FSAT+
Sbjct: 396 RQTLLFSATM 405
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 221 (82.9 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 475
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 476 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 535
Query: 1181 IES--DEIPLYIKMFNSLEKKVDLP 1203
I DE L LE K +P
Sbjct: 536 INKACDESVLMDLKALLLEAKQKVP 560
Score = 218 (81.8 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 528 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 475
Query: 588 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 476 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 535
Query: 648 I 648
I
Sbjct: 536 I 536
Score = 162 (62.1 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 44/128 (34%), Positives = 66/128 (51%)
Query: 878 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 259 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 318
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 319 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 370
Query: 992 TFVFSATL 999
T +FSAT+
Sbjct: 371 TLLFSATM 378
Score = 151 (58.2 bits), Expect = 1.4e-31, Sum P(4) = 1.4e-31
Identities = 42/130 (32%), Positives = 65/130 (50%)
Query: 261 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
Y LI+ P+RELA Q +L ++ A +GGMS ++Q+ + H++V
Sbjct: 259 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMV 318
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 319 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 370
Query: 375 TMIESGHFPE 384
T++ S P+
Sbjct: 371 TLLFSATMPK 380
Score = 119 (46.9 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 185 EMKFPAAILRGLKKKGILHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 240
Score = 119 (46.9 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 185 EMKFPAAILRGLKKKGILHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 240
Score = 91 (37.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 1337 IQPNQLLIFESRNLRYSWDALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGG 1390
++ + L F R Y LI+ P+RELA Q +L ++ A +GG
Sbjct: 244 LEQEKRLPFSKREGPYG---LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 300
Query: 1391 MSTEKQLRILNKCPHILVATPGAL 1414
MS ++Q+ + H++VATPG L
Sbjct: 301 MSVKEQMETIRHGVHMMVATPGRL 324
Score = 64 (27.6 bits), Expect = 7.9e-17, Sum P(3) = 7.9e-17
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIES--DEIPLYIKMFNSLEKKVDLP 1282
+N++HR GRT R+ N G+ I DE L LE K +P
Sbjct: 514 ENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 560
Score = 37 (18.1 bits), Expect = 1.4e-31, Sum P(4) = 1.4e-31
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 401 RQTFVFSATL 410
RQT +FSAT+
Sbjct: 369 RQTLLFSATM 378
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 213 (80.0 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 60/215 (27%), Positives = 109/215 (50%)
Query: 1025 SIKRLQDLLNIKSPKIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFI--LQHPGRTL 1081
+++RL +K P IV + T + T+ ++ I+ DEK S++ FI + + +
Sbjct: 435 AVRRLAQSY-LKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESMSPKDKVI 493
Query: 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141
+F + + L+ L + S LH + Q R + L F+ IL+ATD+A+RGL
Sbjct: 494 IFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIATDLASRGL 553
Query: 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KV 1200
D+ + HV +Y PR E Y+HR GRT RA G+++ LI + + ++ + LE+
Sbjct: 554 DVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELIHILERANQ 613
Query: 1201 DLPDFPIDESVLSLIKK-RIDLAKSIEYLESKIKK 1234
+P+ ++ + K + ++ K + + K KK
Sbjct: 614 SIPEDLVEMAERYKANKLKKEMEKKLGRPQGKPKK 648
Score = 207 (77.9 bits), Expect = 1.1e-32, Sum P(3) = 1.1e-32
Identities = 52/154 (33%), Positives = 82/154 (53%)
Query: 502 IKSPKIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFI--LQHPGRTLVFCNSISSVK 558
+K P IV + T + T+ ++ I+ DEK S++ FI + + ++F + +
Sbjct: 444 LKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESMSPKDKVIIFVSRKAVAD 503
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
L+ L + S LH + Q R + L F+ IL+ATD+A+RGLD+ + HV +
Sbjct: 504 HLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIATDLASRGLDVHDVTHVYN 563
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLI-ESD 651
Y PR E Y+HR GRT RA G+++ LI SD
Sbjct: 564 YDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSD 597
Score = 187 (70.9 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 49/129 (37%), Positives = 74/129 (57%)
Query: 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929
+++ RN L+L PTRELA+QV+ Y +K CV GG + Q++ L K I
Sbjct: 312 LQRARNGPGMLVLTPTRELALQVEAEC-SKYSYKGLKSVCVYGGGDRDGQIKDLLKGVDI 370
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
++ATPGRL + +Q+ +F L I+YLV+DE D+M++ G P++ IL +
Sbjct: 371 IIATPGRLND-LQMNNF--VYLKSISYLVLDEADKMLDMGFEPQIMKIL-----LDIRPD 422
Query: 990 RQTFVFSAT 998
RQT + SAT
Sbjct: 423 RQTVMTSAT 431
Score = 187 (70.9 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 48/131 (36%), Positives = 75/131 (57%)
Query: 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312
+++ RN L+L PTRELA+QV+ Y +K CV GG + Q++ L K I
Sbjct: 312 LQRARNGPGMLVLTPTRELALQVEAEC-SKYSYKGLKSVCVYGGGDRDGQIKDLLKGVDI 370
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
++ATPGRL + +Q+ +F L I+YLV+DE D+M++ G P++ IL +
Sbjct: 371 IIATPGRLND-LQMNNF--VYLKSISYLVLDEADKMLDMGFEPQIMKIL-----LDIRPD 422
Query: 373 RQTMIESGHFP 383
RQT++ S +P
Sbjct: 423 RQTVMTSATWP 433
Score = 123 (48.4 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 33/92 (35%), Positives = 48/92 (52%)
Query: 1340 NQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 1399
+Q ++F + R L+L PTRELA+QV+ Y +K CV GG + Q++
Sbjct: 305 SQPVVFSLQRARNGPGMLVLTPTRELALQVEAEC-SKYSYKGLKSVCVYGGGDRDGQIKD 363
Query: 1400 LNKCPHILVATPGALS---LKRIDLAKSIEYL 1428
L K I++ATPG L+ + KSI YL
Sbjct: 364 LLKGVDIIIATPGRLNDLQMNNFVYLKSISYL 395
Score = 103 (41.3 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
PE +I + + GF+ PT IQS P +L D++G A+TG+GKTL++ +P
Sbjct: 250 PEVMIN-IKKAGFQKPTPIQSQAWP-IILQGIDLIGVAQTGTGKTLSYLMP 298
Score = 103 (41.3 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
PE +I + + GF+ PT IQS P +L D++G A+TG+GKTL++ +P
Sbjct: 250 PEVMIN-IKKAGFQKPTPIQSQAWP-IILQGIDLIGVAQTGTGKTLSYLMP 298
Score = 64 (27.6 bits), Expect = 2.0e-18, Sum P(4) = 2.0e-18
Identities = 18/78 (23%), Positives = 40/78 (51%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPDFPIDESVLSLIKK 1296
+ ++HR GRT RA G+++ LI + + ++ + LE+ +P+ ++ + K
Sbjct: 571 EEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELIHILERANQSIPEDLVEMAERYKANK 630
Query: 1297 -RIDLAKSIEYLESKIKK 1313
+ ++ K + + K KK
Sbjct: 631 LKKEMEKKLGRPQGKPKK 648
Score = 49 (22.3 bits), Expect = 2.0e-18, Sum P(4) = 2.0e-18
Identities = 21/90 (23%), Positives = 43/90 (47%)
Query: 436 SIKRLQDLLNIKSPKIVDL-TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCE 494
+++RL +K P IV + T + T+ ++ I+ DEK S++ FI ++
Sbjct: 435 AVRRLAQSY-LKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFI-----ESMSP 488
Query: 495 EIQDLLNIKSPKIVD-LTEKIGITKTLTES 523
+ + ++ + + D L+ +GI ES
Sbjct: 489 KDKVIIFVSRKAVADHLSSDLGIRHISVES 518
>UNIPROTKB|Q9KKW0 [details] [associations]
symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 191 (72.3 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 46/129 (35%), Positives = 74/129 (57%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
KT + AL+L PTRELA+QV + G + C+ GG+ +Q L + P+ILV
Sbjct: 85 KTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILV 144
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
AT GRL++ Q G L ++ LV+DE DR+++ G +P+++ + ++T+ RQ
Sbjct: 145 ATTGRLFDLTQSG----LRLNRVTTLVLDEADRLLDMGFWPQVQALA-----SQTAGVRQ 195
Query: 992 TFVFSATLT 1000
T + SAT +
Sbjct: 196 TVMCSATFS 204
Score = 186 (70.5 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 45/130 (34%), Positives = 74/130 (56%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
KT + AL+L PTRELA+QV + G + C+ GG+ +Q L + P+ILV
Sbjct: 85 KTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILV 144
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
AT GRL++ Q G L ++ LV+DE DR+++ G +P+++ + ++T+ RQ
Sbjct: 145 ATTGRLFDLTQSG----LRLNRVTTLVLDEADRLLDMGFWPQVQALA-----SQTAGVRQ 195
Query: 375 TMIESGHFPE 384
T++ S F +
Sbjct: 196 TVMCSATFSD 205
Score = 185 (70.2 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 51/179 (28%), Positives = 84/179 (46%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRL 1093
+++P V + I + + E+ L K L + QH + LVF + + L
Sbjct: 215 MRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSL 274
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
T+ L LH +Q +R L F++ +L+ATD+ ARG+ I + VI++
Sbjct: 275 TKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIELLPVVINFE 334
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLY--IKMFNSLEKKV-DLPDFPIDE 1209
+P +E Y+HR GRTARA G+ L L+ E+ + E V +L FP+ +
Sbjct: 335 LPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRTLTQRELPVQNLEGFPVTD 393
Score = 181 (68.8 bits), Expect = 2.3e-32, Sum P(3) = 2.3e-32
Identities = 44/148 (29%), Positives = 73/148 (49%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRL 560
+++P V + I + + E+ L K L + QH + LVF + + L
Sbjct: 215 MRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSL 274
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L LH +Q +R L F++ +L+ATD+ ARG+ I + VI++
Sbjct: 275 TKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIELLPVVINFE 334
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLI 648
+P +E Y+HR GRTARA G+ + L+
Sbjct: 335 LPMHAETYVHRVGRTARAGQHGIALSLV 362
Score = 118 (46.6 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+Q + + +I+AL K P+ IQ++V+P A+L KD+ A TGSGKTLA+G
Sbjct: 20 IQPMSFSSLALSADLIQAL-PKAITEPSAIQTLVIP-AMLTGKDVFALANTGSGKTLAYG 77
Query: 208 IPIL 211
+P+L
Sbjct: 78 LPLL 81
Score = 118 (46.6 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+Q + + +I+AL K P+ IQ++V+P A+L KD+ A TGSGKTLA+G
Sbjct: 20 IQPMSFSSLALSADLIQAL-PKAITEPSAIQTLVIP-AMLTGKDVFALANTGSGKTLAYG 77
Query: 825 IPIL 828
+P+L
Sbjct: 78 LPLL 81
Score = 112 (44.5 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA+QV + G + C+ GG+ +Q L + P+ILVAT G L
Sbjct: 92 ALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILVATTGRL 150
Score = 66 (28.3 bits), Expect = 4.8e-21, Sum P(3) = 4.8e-21
Identities = 31/127 (24%), Positives = 54/127 (42%)
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDFPIDESVLSLIKKRIDLAKSIEY 1227
A+ N + LT L ++ + + S E++ L +F + + + + IE
Sbjct: 267 AKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIEL 326
Query: 1228 LESKIKKNRP---DNWLHRSGRTARANNEGLTLVLIESDEIPLY--IKMFNSLEKKV-DL 1281
L I P + ++HR GRTARA G+ L L+ E+ + E V +L
Sbjct: 327 LPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRTLTQRELPVQNL 386
Query: 1282 PDFPIDE 1288
FP+ +
Sbjct: 387 EGFPVTD 393
>TIGR_CMR|VC_A0990 [details] [associations]
symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 191 (72.3 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 46/129 (35%), Positives = 74/129 (57%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
KT + AL+L PTRELA+QV + G + C+ GG+ +Q L + P+ILV
Sbjct: 85 KTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILV 144
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
AT GRL++ Q G L ++ LV+DE DR+++ G +P+++ + ++T+ RQ
Sbjct: 145 ATTGRLFDLTQSG----LRLNRVTTLVLDEADRLLDMGFWPQVQALA-----SQTAGVRQ 195
Query: 992 TFVFSATLT 1000
T + SAT +
Sbjct: 196 TVMCSATFS 204
Score = 186 (70.5 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 45/130 (34%), Positives = 74/130 (56%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
KT + AL+L PTRELA+QV + G + C+ GG+ +Q L + P+ILV
Sbjct: 85 KTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILV 144
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
AT GRL++ Q G L ++ LV+DE DR+++ G +P+++ + ++T+ RQ
Sbjct: 145 ATTGRLFDLTQSG----LRLNRVTTLVLDEADRLLDMGFWPQVQALA-----SQTAGVRQ 195
Query: 375 TMIESGHFPE 384
T++ S F +
Sbjct: 196 TVMCSATFSD 205
Score = 185 (70.2 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 51/179 (28%), Positives = 84/179 (46%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRL 1093
+++P V + I + + E+ L K L + QH + LVF + + L
Sbjct: 215 MRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSL 274
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
T+ L LH +Q +R L F++ +L+ATD+ ARG+ I + VI++
Sbjct: 275 TKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIELLPVVINFE 334
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLY--IKMFNSLEKKV-DLPDFPIDE 1209
+P +E Y+HR GRTARA G+ L L+ E+ + E V +L FP+ +
Sbjct: 335 LPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRTLTQRELPVQNLEGFPVTD 393
Score = 181 (68.8 bits), Expect = 2.3e-32, Sum P(3) = 2.3e-32
Identities = 44/148 (29%), Positives = 73/148 (49%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRL 560
+++P V + I + + E+ L K L + QH + LVF + + L
Sbjct: 215 MRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSL 274
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
T+ L LH +Q +R L F++ +L+ATD+ ARG+ I + VI++
Sbjct: 275 TKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIELLPVVINFE 334
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLI 648
+P +E Y+HR GRTARA G+ + L+
Sbjct: 335 LPMHAETYVHRVGRTARAGQHGIALSLV 362
Score = 118 (46.6 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
+Q + + +I+AL K P+ IQ++V+P A+L KD+ A TGSGKTLA+G
Sbjct: 20 IQPMSFSSLALSADLIQAL-PKAITEPSAIQTLVIP-AMLTGKDVFALANTGSGKTLAYG 77
Query: 208 IPIL 211
+P+L
Sbjct: 78 LPLL 81
Score = 118 (46.6 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
+Q + + +I+AL K P+ IQ++V+P A+L KD+ A TGSGKTLA+G
Sbjct: 20 IQPMSFSSLALSADLIQAL-PKAITEPSAIQTLVIP-AMLTGKDVFALANTGSGKTLAYG 77
Query: 825 IPIL 828
+P+L
Sbjct: 78 LPLL 81
Score = 112 (44.5 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA+QV + G + C+ GG+ +Q L + P+ILVAT G L
Sbjct: 92 ALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILVATTGRL 150
Score = 66 (28.3 bits), Expect = 4.8e-21, Sum P(3) = 4.8e-21
Identities = 31/127 (24%), Positives = 54/127 (42%)
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDFPIDESVLSLIKKRIDLAKSIEY 1227
A+ N + LT L ++ + + S E++ L +F + + + + IE
Sbjct: 267 AKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIEL 326
Query: 1228 LESKIKKNRP---DNWLHRSGRTARANNEGLTLVLIESDEIPLY--IKMFNSLEKKV-DL 1281
L I P + ++HR GRTARA G+ L L+ E+ + E V +L
Sbjct: 327 LPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRTLTQRELPVQNL 386
Query: 1282 PDFPIDE 1288
FP+ +
Sbjct: 387 EGFPVTD 393
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 222 (83.2 bits), Expect = 2.5e-33, Sum P(3) = 2.5e-33
Identities = 53/173 (30%), Positives = 90/173 (52%)
Query: 1053 LTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
+T+ K + K YL + + P L+FC + V + + L + + + +H +
Sbjct: 450 VTQEVEFVKPEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKS 509
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q +R + FR+ +L+ATDVA++GLD P I+HVI++ +PR E YIHR GRT R
Sbjct: 510 QDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRG 569
Query: 1173 NEGLTLVLIE---SDEIPLYIKMFNSLEKKVDLP----DFPIDESVLSLIKKR 1218
N+G+ I ++ + L +K + +E K +P + P D L ++ R
Sbjct: 570 NKGVATTFINKNNTESLLLDLK-YLLIEAKQKVPPALLEIPDDNQYLQKLQDR 621
Score = 222 (83.2 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 65/220 (29%), Positives = 106/220 (48%)
Query: 439 RLQDLLNIKSPKIVDLTEKIGITKTLTESKI-LCKHDEKDSYLYYFILQHP----GRTLC 493
RL DLLN K L + +G+ + + I L D+ S L F Q T+
Sbjct: 365 RLLDLLNKKKINF-KLCKYLGLDEA--DRLIDLGFEDDIRSVLDNFTNQRQTLLFSATMP 421
Query: 494 EEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 551
++IQ+ + P V++ +T+ K + K YL + + P L+FC
Sbjct: 422 KKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEAKIVYLLECLQKTPPPVLIFC 481
Query: 552 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 611
+ V + + L + + + +H +Q +R + FR+ +L+ATDVA++GLD P
Sbjct: 482 ENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFP 541
Query: 612 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651
I+HVI++ +PR E YIHR GRT R N+G+ I +
Sbjct: 542 EIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKN 581
Score = 165 (63.1 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 61/209 (29%), Positives = 94/209 (44%)
Query: 878 YALILAPTRELAIQVQ---NHILDA----GKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
+ LIL P+RELA Q N +A G + ++ +GG+ +Q I K H++
Sbjct: 300 FGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMI 359
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
+ATPGRL + + + +L K YL +DE DR+I+ G +++++LD T R
Sbjct: 360 IATPGRLLDLLNKKKINF-KLCK--YLGLDEADRLIDLGFEDDIRSVLDNFT-----NQR 411
Query: 991 QTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDPS-IKRLQDLLNIK-SPKIVDLTEKIG 1048
QT +FSAT+ + + Q++ +K KIV L E +
Sbjct: 412 QTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEAKIVYLLECL- 470
Query: 1049 ITKTLTESKILC--KHDEKDSYLYYFILQ 1075
KT I C K D D Y Y + Q
Sbjct: 471 -QKTPPPVLIFCENKKDVDDIYEYLLLKQ 498
Score = 152 (58.6 bits), Expect = 2.5e-33, Sum P(3) = 2.5e-33
Identities = 42/131 (32%), Positives = 69/131 (52%)
Query: 261 YALILAPTRELAIQVQ---NHILDA----GKYTPVKVACVVGGMSTEKQLRILNKCPHIL 313
+ LIL P+RELA Q N +A G + ++ +GG+ +Q I K H++
Sbjct: 300 FGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMI 359
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
+ATPGRL + + + +L K YL +DE DR+I+ G +++++LD T R
Sbjct: 360 IATPGRLLDLLNKKKINF-KLCK--YLGLDEADRLIDLGFEDDIRSVLDNFT-----NQR 411
Query: 374 QTMIESGHFPE 384
QT++ S P+
Sbjct: 412 QTLLFSATMPK 422
Score = 129 (50.5 bits), Expect = 2.5e-33, Sum P(3) = 2.5e-33
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 133 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
++ L + T + ED+ + + + IP+ +I L +KG K P+ IQ +P +L+ +D+
Sbjct: 205 RDQLNIIT-DGEDIPPPITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLP-VILSGRDM 262
Query: 193 VGAAETGSGKTLAFGIPIL 211
+G A TGSGKTL F +P++
Sbjct: 263 IGIAYTGSGKTLVFTLPMV 281
Score = 129 (50.5 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 750 KELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
++ L + T + ED+ + + + IP+ +I L +KG K P+ IQ +P +L+ +D+
Sbjct: 205 RDQLNIIT-DGEDIPPPITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLP-VILSGRDM 262
Query: 810 VGAAETGSGKTLAFGIPIL 828
+G A TGSGKTL F +P++
Sbjct: 263 IGIAYTGSGKTLVFTLPMV 281
Score = 90 (36.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 36/133 (27%), Positives = 61/133 (45%)
Query: 1357 LILAPTRELAIQVQ---NHILDA----GKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 1409
LIL P+RELA Q N +A G + ++ +GG+ +Q I K H+++A
Sbjct: 302 LILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIA 361
Query: 1410 TPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAK--DMXXXXXXENLIQPKANSREN 1467
TPG L +DL + + K+ K L++A + D+ +++ N R+
Sbjct: 362 TPGRL----LDLLNK-KKINFKLCKYLG---LDEADRLIDLGFEDDIRSVLDNFTNQRQT 413
Query: 1468 ALMSKALVSKRKE 1480
L S + K +E
Sbjct: 414 LLFSATMPKKIQE 426
Score = 67 (28.6 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIE---SDEIPLYIKMFNSLEKKVDLP----DFPIDESV 1290
+N++HR GRT R N+G+ I ++ + L +K + +E K +P + P D
Sbjct: 556 ENYIHRIGRTGRRGNKGVATTFINKNNTESLLLDLK-YLLIEAKQKVPPALLEIPDDNQY 614
Query: 1291 LSLIKKR 1297
L ++ R
Sbjct: 615 LQKLQDR 621
Score = 52 (23.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 29/115 (25%), Positives = 45/115 (39%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXXXXXDP 435
+I+ G +++++LD T RQT +FSAT+
Sbjct: 391 LIDLGFEDDIRSVLDNFT-----NQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGA 445
Query: 436 S-IKRLQDLLNIK-SPKIVDLTEKIGITKTLTESKILC--KHDEKDSYLYYFILQ 486
+ + Q++ +K KIV L E + KT I C K D D Y Y + Q
Sbjct: 446 ANLNVTQEVEFVKPEAKIVYLLECL--QKTPPPVLIFCENKKDVDDIYEYLLLKQ 498
Score = 39 (18.8 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 13/106 (12%), Positives = 39/106 (36%)
Query: 87 EVSELSANTNDPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTYTSANKELLEVDTSNNEDM 146
+++++ + N+ Q + Q + + T T+ +SNN++
Sbjct: 25 KLNQIKSKLNNLKQQQPQQHSQQQENEQNNATATNTNITNTTTTTTTTTTTTTSSNNDNN 84
Query: 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 192
F + + + ++++ ++ K K Q + + D+
Sbjct: 85 FEDEKKPI-YQQSQSLLDQKFEMIKKQENKTQRELQQGGTIIENDV 129
Score = 39 (18.8 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 13/106 (12%), Positives = 39/106 (36%)
Query: 704 EVSELSANTNDPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDM 763
+++++ + N+ Q + Q + + T T+ +SNN++
Sbjct: 25 KLNQIKSKLNNLKQQQPQQHSQQQENEQNNATATNTNITNTTTTTTTTTTTTTSSNNDNN 84
Query: 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDI 809
F + + + ++++ ++ K K Q + + D+
Sbjct: 85 FEDEKKPI-YQQSQSLLDQKFEMIKKQENKTQRELQQGGTIIENDV 129
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 234 (87.4 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 73/231 (31%), Positives = 119/231 (51%)
Query: 1027 KRLQDLLNI---KSPKIVDLTE-KIGITKT-LTESKILCKHDEKDSYLYYFILQHPGRTL 1081
++++DL I K P V + + K T L + ++C +++ L+ F+ ++ + L
Sbjct: 368 RKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 427
Query: 1082 -VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVAARG
Sbjct: 428 MVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARG 487
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLE 1197
LDIP ++ ++ Y P + YIHR GRTAR N G L+++ +E+ Y+K +
Sbjct: 488 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILHPEELGFLRYLK-----Q 542
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTA 1248
KV L +F S +S I+ + LE I+KN +LH+S + A
Sbjct: 543 SKVPLSEFEFSWSKISDIQSQ---------LEKLIEKNY---FLHKSAQEA 581
Score = 215 (80.7 bits), Expect = 9.0e-30, Sum P(3) = 9.0e-30
Identities = 55/170 (32%), Positives = 91/170 (53%)
Query: 491 TLCEEIQDLLNI---KSPKIVDLTE-KIGITKT-LTESKILCKHDEKDSYLYYFILQHPG 545
T +++DL I K P V + + K T L + ++C +++ L+ F+ ++
Sbjct: 365 TQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRK 424
Query: 546 RTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+ L VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVA
Sbjct: 425 KKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVA 484
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTVVLIESDEI 653
ARGLDIP ++ ++ Y P + YIHR GRTAR N G ++++ +E+
Sbjct: 485 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILHPEEL 534
Score = 161 (61.7 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 50/130 (38%), Positives = 70/130 (53%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
RN LIL+PTRELA+Q + + Y ++GG + + + L +I+VAT
Sbjct: 248 RNGTGVLILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRSAEAQKLGNGINIIVAT 307
Query: 934 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
PGRL L H T +YK + LVIDE DR+++ G ELK I+ ++ T R
Sbjct: 308 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII-KLLPTR----R 357
Query: 991 QTFVFSATLT 1000
QT +FSAT T
Sbjct: 358 QTMLFSATQT 367
Score = 147 (56.8 bits), Expect = 7.3e-32, Sum P(3) = 7.3e-32
Identities = 49/147 (33%), Positives = 75/147 (51%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
RN LIL+PTRELA+Q + + Y ++GG + + + L +I+VAT
Sbjct: 248 RNGTGVLILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRSAEAQKLGNGINIIVAT 307
Query: 317 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
PGRL L H T +YK + LVIDE DR+++ G ELK I+ ++ T R
Sbjct: 308 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII-KLLPTR----R 357
Query: 374 QTMIESGHFPELKNILDRVTMTETSQP 400
QTM+ S + + + D ++ +P
Sbjct: 358 QTMLFSA--TQTRKVEDLARISLKKEP 382
Score = 107 (42.7 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 158 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+ E ++A+ + GF T+IQ + P LL +D++ AA+TGSGKTLAF IP + IV
Sbjct: 185 VNENTLKAIKEMGFTNMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPAVELIV- 241
Query: 217 KLE 219
KL+
Sbjct: 242 KLK 244
Score = 107 (42.7 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 775 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+ E ++A+ + GF T+IQ + P LL +D++ AA+TGSGKTLAF IP + IV
Sbjct: 185 VNENTLKAIKEMGFTNMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPAVELIV- 241
Query: 834 KLE 836
KL+
Sbjct: 242 KLK 244
Score = 79 (32.9 bits), Expect = 6.9e-17, Sum P(3) = 6.9e-17
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 1237 PDNWLHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLEKKVDLPDFPIDESVLSL 1293
P ++HR GRTAR N G L+++ +E+ Y+K + KV L +F S +S
Sbjct: 505 PKEYIHRVGRTARGLNGRGHALLILHPEELGFLRYLK-----QSKVPLSEFEFSWSKISD 559
Query: 1294 IKKRIDLAKSIE 1305
I+ +++ K IE
Sbjct: 560 IQSQLE--KLIE 569
Score = 43 (20.2 bits), Expect = 4.0e-21, Sum P(3) = 4.0e-21
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
+++ G ELK I+ ++ T RQT +FSAT T
Sbjct: 337 ILDVGFEEELKQII-KLLPTR----RQTMLFSATQT 367
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 197 (74.4 bits), Expect = 2.9e-33, Sum P(3) = 2.9e-33
Identities = 53/179 (29%), Positives = 85/179 (47%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRL 1093
+++P V + + + + EK S L I R+ +VF + +
Sbjct: 207 LRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKIRDPELRSAIVFTRTKHGADGV 266
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
+ L + +H + +Q QR K L+ F+ IL+ATD+AARG+ + + HVI+Y
Sbjct: 267 VKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARGIHVDALTHVINYD 326
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLY--IKMFNSLE---KKVDLPDFPI 1207
+P E ++HR GRTARA N G+ + DE P I+ L+ V LPD P+
Sbjct: 327 LPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTLRAIEKLTGLKLAPNGVSLPDEPL 385
Score = 190 (71.9 bits), Expect = 2.5e-31, Sum P(3) = 2.5e-31
Identities = 46/154 (29%), Positives = 75/154 (48%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFCNSISSVKRL 560
+++P V + + + + EK S L I R+ +VF + +
Sbjct: 207 LRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKIRDPELRSAIVFTRTKHGADGV 266
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
+ L + +H + +Q QR K L+ F+ IL+ATD+AARG+ + + HVI+Y
Sbjct: 267 VKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARGIHVDALTHVINYD 326
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
+P E ++HR GRTARA N G+ + DE P
Sbjct: 327 LPDVPEQFVHRIGRTARAGNSGVAISFCSRDERP 360
Score = 173 (66.0 bits), Expect = 2.9e-33, Sum P(3) = 2.9e-33
Identities = 48/120 (40%), Positives = 62/120 (51%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+LAPTRELA Q+ G ++V V GG Q+R L + HILVATPGRL
Sbjct: 84 LVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVATPGRL-- 141
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
I L L K+ L++DE D+M++ G L+ I V RQT FSAT+
Sbjct: 142 -IDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVP-----SKRQTLFFSATM 195
Score = 162 (62.1 bits), Expect = 4.0e-32, Sum P(3) = 4.0e-32
Identities = 46/122 (37%), Positives = 61/122 (50%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTRELA Q+ G ++V V GG Q+R L + HILVATPGRL
Sbjct: 84 LVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVATPGRL-- 141
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
I L L K+ L++DE D+M++ G L+ I V RQT+ S
Sbjct: 142 -IDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVP-----SKRQTLFFSATM 195
Query: 383 PE 384
P+
Sbjct: 196 PK 197
Score = 125 (49.1 bits), Expect = 2.9e-33, Sum P(3) = 2.9e-33
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207
V M+++ + I+ +L + G+ PT IQ +P + R DIVG A+TG+GKTLAF
Sbjct: 4 VIMSDFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGR-DIVGLAQTGTGKTLAFA 62
Query: 208 IPIL 211
PIL
Sbjct: 63 APIL 66
Score = 125 (49.1 bits), Expect = 2.9e-33, Sum P(3) = 2.9e-33
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V M+++ + I+ +L + G+ PT IQ +P + R DIVG A+TG+GKTLAF
Sbjct: 4 VIMSDFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGR-DIVGLAQTGTGKTLAFA 62
Query: 825 IPIL 828
PIL
Sbjct: 63 APIL 66
Score = 113 (44.8 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L+LAPTRELA Q+ G ++V V GG Q+R L + HILVATPG L
Sbjct: 84 LVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVATPGRLID 143
Query: 1417 KRIDLAKSIEYLESKI 1432
A S++ +E+ I
Sbjct: 144 LMEQRAVSLDKVETLI 159
Score = 85 (35.0 bits), Expect = 1.9e-21, Sum P(3) = 1.9e-21
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLY--IKMFNSLE---KKVDLPDFPI 1286
P+ ++HR GRTARA N G+ + DE P I+ L+ V LPD P+
Sbjct: 331 PEQFVHRIGRTARAGNSGVAISFCSRDERPTLRAIEKLTGLKLAPNGVSLPDEPL 385
Score = 39 (18.8 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 361 LDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
LD+V + Q M++ G L+ I V RQT FSAT+
Sbjct: 152 LDKVETLILDEADQ-MLDLGFIHALRAIAKNVP-----SKRQTLFFSATM 195
Score = 37 (18.1 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 502 IKSP-KIVDLTEKIGITKTLTESKILCKHDEKDSYL 536
+ +P +++DL E+ ++ E+ IL DE D L
Sbjct: 135 VATPGRLIDLMEQRAVSLDKVETLIL---DEADQML 167
Score = 37 (18.1 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 1035 IKSP-KIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
+ +P +++DL E+ ++ E+ IL DE D L
Sbjct: 135 VATPGRLIDLMEQRAVSLDKVETLIL---DEADQML 167
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 212 (79.7 bits), Expect = 3.4e-33, Sum P(3) = 3.4e-33
Identities = 58/211 (27%), Positives = 102/211 (48%)
Query: 1024 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLV 1082
P +K + + +++P+ VD+ + + + K EKD + + + ++V
Sbjct: 212 PMVKEIVERF-LRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIV 270
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F + +RL L LH + Q R + +D + IL+ATDV ARGLD
Sbjct: 271 FVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLD 330
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI---KMFNSLEKK 1199
+P I HV +Y +P E YIHR GRT RA +G ++L+ +++I + ++ S ++
Sbjct: 331 VPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEE 390
Query: 1200 VDLPDFP-IDESVLSLIKKRIDLAKSIEYLE 1229
+ LP + ES L+ + + + K LE
Sbjct: 391 IQLPHRDKVAESRLTKLGQELAADKEFSSLE 421
Score = 202 (76.2 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 47/153 (30%), Positives = 77/153 (50%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRL 560
+++P+ VD+ + + + K EKD + + + ++VF + +RL
Sbjct: 222 LRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERL 281
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
L LH + Q R + +D + IL+ATDV ARGLD+P I HV +Y
Sbjct: 282 ADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYD 341
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P E YIHR GRT RA +G ++L+ +++I
Sbjct: 342 IPFDVESYIHRIGRTGRAGRKGKAILLVRTNQI 374
Score = 170 (64.9 bits), Expect = 3.4e-33, Sum P(3) = 3.4e-33
Identities = 44/125 (35%), Positives = 68/125 (54%)
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATP 934
K A+++APTRELAIQV I + G+ +KV + GG S Q+R L HI+V TP
Sbjct: 94 KPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 153
Query: 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFV 994
GR+ + I HL E + ++DE D M++ G ++ I++ + + Q +
Sbjct: 154 GRVKDLITRDRLHLDECHTF---ILDEADEMLKMGFVDDVTWIME-----QAPESAQRVL 205
Query: 995 FSATL 999
FSAT+
Sbjct: 206 FSATM 210
Score = 170 (64.9 bits), Expect = 3.4e-33, Sum P(3) = 3.4e-33
Identities = 45/134 (33%), Positives = 74/134 (55%)
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATP 317
K A+++APTRELAIQV I + G+ +KV + GG S Q+R L HI+V TP
Sbjct: 94 KPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 153
Query: 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
GR+ + I HL E + ++DE D M++ G ++ I+++ E++Q + +
Sbjct: 154 GRVKDLITRDRLHLDECHTF---ILDEADEMLKMGFVDDVTWIMEQAP--ESAQ--RVLF 206
Query: 378 ESGHFPELKNILDR 391
+ P +K I++R
Sbjct: 207 SATMPPMVKEIVER 220
Score = 120 (47.3 bits), Expect = 3.4e-33, Sum P(3) = 3.4e-33
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
+D +Q ++ + N I+ AL + GF +PT IQ+ +P LL +D +G A+TG+GKT
Sbjct: 22 QDTAIQFSD-LALN--SAILSALTEMGFVSPTPIQAAAIP-VLLEGRDALGKAQTGTGKT 77
Query: 204 LAFGIPIL 211
AF +P+L
Sbjct: 78 AAFSLPLL 85
Score = 120 (47.3 bits), Expect = 3.4e-33, Sum P(3) = 3.4e-33
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
+D +Q ++ + N I+ AL + GF +PT IQ+ +P LL +D +G A+TG+GKT
Sbjct: 22 QDTAIQFSD-LALN--SAILSALTEMGFVSPTPIQAAAIP-VLLEGRDALGKAQTGTGKT 77
Query: 821 LAFGIPIL 828
AF +P+L
Sbjct: 78 AAFSLPLL 85
Score = 120 (47.3 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 1342 LLIFESRNL-RYSWDALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRI 1399
L + NL +Y A+++APTRELAIQV I + G+ +KV + GG S Q+R
Sbjct: 82 LPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRA 141
Query: 1400 LNKCPHILVATPG 1412
L HI+V TPG
Sbjct: 142 LKSGAHIVVGTPG 154
Score = 72 (30.4 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 19/75 (25%), Positives = 41/75 (54%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYI---KMFNSLEKKVDLPDFP-IDESVLSL 1293
++++HR GRT RA +G ++L+ +++I + ++ S +++ LP + ES L+
Sbjct: 347 ESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQLPHRDKVAESRLTK 406
Query: 1294 IKKRIDLAKSIEYLE 1308
+ + + K LE
Sbjct: 407 LGQELAADKEFSSLE 421
Score = 44 (20.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205
FV W+ PE+ R L+ P ++ +V L + V A GS +T+A
Sbjct: 186 FVDDVTWIMEQAPESAQRVLFSATM--PPMVKEIV--ERFLRNPECVDVA--GSNQTVA 238
Score = 44 (20.5 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822
FV W+ PE+ R L+ P ++ +V L + V A GS +T+A
Sbjct: 186 FVDDVTWIMEQAPESAQRVLFSATM--PPMVKEIV--ERFLRNPECVDVA--GSNQTVA 238
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 212 (79.7 bits), Expect = 3.4e-33, Sum P(3) = 3.4e-33
Identities = 58/211 (27%), Positives = 102/211 (48%)
Query: 1024 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLV 1082
P +K + + +++P+ VD+ + + + K EKD + + + ++V
Sbjct: 212 PMVKEIVERF-LRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIV 270
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
F + +RL L LH + Q R + +D + IL+ATDV ARGLD
Sbjct: 271 FVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLD 330
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI---KMFNSLEKK 1199
+P I HV +Y +P E YIHR GRT RA +G ++L+ +++I + ++ S ++
Sbjct: 331 VPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEE 390
Query: 1200 VDLPDFP-IDESVLSLIKKRIDLAKSIEYLE 1229
+ LP + ES L+ + + + K LE
Sbjct: 391 IQLPHRDKVAESRLTKLGQELAADKEFSSLE 421
Score = 202 (76.2 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 47/153 (30%), Positives = 77/153 (50%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRL 560
+++P+ VD+ + + + K EKD + + + ++VF + +RL
Sbjct: 222 LRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERL 281
Query: 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620
L LH + Q R + +D + IL+ATDV ARGLD+P I HV +Y
Sbjct: 282 ADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYD 341
Query: 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
+P E YIHR GRT RA +G ++L+ +++I
Sbjct: 342 IPFDVESYIHRIGRTGRAGRKGKAILLVRTNQI 374
Score = 170 (64.9 bits), Expect = 3.4e-33, Sum P(3) = 3.4e-33
Identities = 44/125 (35%), Positives = 68/125 (54%)
Query: 876 KLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATP 934
K A+++APTRELAIQV I + G+ +KV + GG S Q+R L HI+V TP
Sbjct: 94 KPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 153
Query: 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFV 994
GR+ + I HL E + ++DE D M++ G ++ I++ + + Q +
Sbjct: 154 GRVKDLITRDRLHLDECHTF---ILDEADEMLKMGFVDDVTWIME-----QAPESAQRVL 205
Query: 995 FSATL 999
FSAT+
Sbjct: 206 FSATM 210
Score = 170 (64.9 bits), Expect = 3.4e-33, Sum P(3) = 3.4e-33
Identities = 45/134 (33%), Positives = 74/134 (55%)
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATP 317
K A+++APTRELAIQV I + G+ +KV + GG S Q+R L HI+V TP
Sbjct: 94 KPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 153
Query: 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMI 377
GR+ + I HL E + ++DE D M++ G ++ I+++ E++Q + +
Sbjct: 154 GRVKDLITRDRLHLDECHTF---ILDEADEMLKMGFVDDVTWIMEQAP--ESAQ--RVLF 206
Query: 378 ESGHFPELKNILDR 391
+ P +K I++R
Sbjct: 207 SATMPPMVKEIVER 220
Score = 120 (47.3 bits), Expect = 3.4e-33, Sum P(3) = 3.4e-33
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 203
+D +Q ++ + N I+ AL + GF +PT IQ+ +P LL +D +G A+TG+GKT
Sbjct: 22 QDTAIQFSD-LALN--SAILSALTEMGFVSPTPIQAAAIP-VLLEGRDALGKAQTGTGKT 77
Query: 204 LAFGIPIL 211
AF +P+L
Sbjct: 78 AAFSLPLL 85
Score = 120 (47.3 bits), Expect = 3.4e-33, Sum P(3) = 3.4e-33
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 761 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKT 820
+D +Q ++ + N I+ AL + GF +PT IQ+ +P LL +D +G A+TG+GKT
Sbjct: 22 QDTAIQFSD-LALN--SAILSALTEMGFVSPTPIQAAAIP-VLLEGRDALGKAQTGTGKT 77
Query: 821 LAFGIPIL 828
AF +P+L
Sbjct: 78 AAFSLPLL 85
Score = 120 (47.3 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 1342 LLIFESRNL-RYSWDALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRI 1399
L + NL +Y A+++APTRELAIQV I + G+ +KV + GG S Q+R
Sbjct: 82 LPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRA 141
Query: 1400 LNKCPHILVATPG 1412
L HI+V TPG
Sbjct: 142 LKSGAHIVVGTPG 154
Score = 72 (30.4 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 19/75 (25%), Positives = 41/75 (54%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYI---KMFNSLEKKVDLPDFP-IDESVLSL 1293
++++HR GRT RA +G ++L+ +++I + ++ S +++ LP + ES L+
Sbjct: 347 ESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQLPHRDKVAESRLTK 406
Query: 1294 IKKRIDLAKSIEYLE 1308
+ + + K LE
Sbjct: 407 LGQELAADKEFSSLE 421
Score = 44 (20.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205
FV W+ PE+ R L+ P ++ +V L + V A GS +T+A
Sbjct: 186 FVDDVTWIMEQAPESAQRVLFSATM--PPMVKEIV--ERFLRNPECVDVA--GSNQTVA 238
Score = 44 (20.5 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822
FV W+ PE+ R L+ P ++ +V L + V A GS +T+A
Sbjct: 186 FVDDVTWIMEQAPESAQRVLFSATM--PPMVKEIV--ERFLRNPECVDVA--GSNQTVA 238
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 197 (74.4 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
Identities = 46/119 (38%), Positives = 69/119 (57%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LILAPTREL++Q+ N GK + V C GG S +Q + L + I+VATPGR+ +
Sbjct: 346 LILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATPGRMID 405
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+++ T L ++ +LV+DE DRM G P++++I + V RQ +FSAT
Sbjct: 406 MVKM---KATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVR-----PDRQCLMFSAT 456
Score = 190 (71.9 bits), Expect = 2.1e-32, Sum P(3) = 2.1e-32
Identities = 48/138 (34%), Positives = 75/138 (54%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LILAPTREL++Q+ N GK + V C GG S +Q + L + I+VATPGR+ +
Sbjct: 346 LILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATPGRMID 405
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
+++ T L ++ +LV+DE DRM G P++++I + V RQ ++ S F
Sbjct: 406 MVKM---KATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVR-----PDRQCLMFSATF 457
Query: 383 PELKNILDRVTMTETSQP 400
K ++R+ S P
Sbjct: 458 ---KKRIERLARDVLSDP 472
Score = 187 (70.9 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
Identities = 69/236 (29%), Positives = 116/236 (49%)
Query: 1026 IKRL-QDLLNIKSPKIV--DLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQH--PGR 1079
I+RL +D+L+ +IV DL E + +T+S + + +K ++L +++ G
Sbjct: 461 IERLARDVLS-DPVRIVQGDLNEA---NQDITQSVYVFPNPLQKWNWLLCHLVKFLSEGS 516
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
L+F + ++ L + + + L LH M+Q R K + +F+ + IL+ATDVAAR
Sbjct: 517 VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAAR 576
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF-NSLEK 1198
GLDIP I +V++Y R E + HR GRT RA +G L+ + K F L +
Sbjct: 577 GLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKD-----KEFAGHLVR 631
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEG 1254
++ D + + ++ L K +S + + K K RP N G + N G
Sbjct: 632 NLEGADQLVPDDLMELAMKS-SWFRSSRFKQGKGK--RPTNTHTGLGYREKGNGGG 684
Score = 181 (68.8 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 57/185 (30%), Positives = 93/185 (50%)
Query: 470 LCKHDEKDSYLYYFILQHPGRTLCEEI-QDLLNIKSPKIV--DLTEKIGITKTLTESKIL 526
+C H D F R E + +D+L+ +IV DL E + +T+S +
Sbjct: 440 ICNHVRPDRQCLMFSATFKKRI--ERLARDVLS-DPVRIVQGDLNEA---NQDITQSVYV 493
Query: 527 CKHD-EKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+ +K ++L +++ G L+F + ++ L + + + L LH M+Q R
Sbjct: 494 FPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADR 553
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
K + +F+ + IL+ATDVAARGLDIP I +V++Y R E + HR GRT RA +G
Sbjct: 554 NKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGN 613
Query: 644 TVVLI 648
L+
Sbjct: 614 AYTLV 618
Score = 122 (48.0 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F E +I+A+ + + PT IQ+ +P+AL R DI+G A+TGSGKT AF P+L ++
Sbjct: 274 FGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGR-DIIGIAKTGSGKTAAFIWPMLMHVM 332
Query: 216 NK 217
++
Sbjct: 333 DQ 334
Score = 122 (48.0 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F E +I+A+ + + PT IQ+ +P+AL R DI+G A+TGSGKT AF P+L ++
Sbjct: 274 FGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGR-DIIGIAKTGSGKTAAFIWPMLMHVM 332
Query: 833 NK 834
++
Sbjct: 333 DQ 334
Score = 120 (47.3 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
LILAPTREL++Q+ N GK + V C GG S +Q + L + I+VATPG +
Sbjct: 346 LILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATPGRM-- 403
Query: 1417 KRIDLAK 1423
ID+ K
Sbjct: 404 --IDMVK 408
Score = 49 (22.3 bits), Expect = 6.6e-19, Sum P(3) = 6.6e-19
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 1242 HRSGRTARANNEGLTLVLIESDEIPLYIKMF-NSLEKKVDLPDFPIDESVLSLIKKRIDL 1300
HR GRT RA +G L+ + K F L + ++ D + + ++ L K
Sbjct: 600 HRIGRTGRAGEKGNAYTLVTDKD-----KEFAGHLVRNLEGADQLVPDDLMELAMKS-SW 653
Query: 1301 AKSIEYLESKIKKNRPDN 1318
+S + + K K RP N
Sbjct: 654 FRSSRFKQGKGK--RPTN 669
Score = 44 (20.5 bits), Expect = 4.4e-25, Sum P(3) = 4.4e-25
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
E ++ N+ + ++ EL+ L V +T S P+ + GHF + ++ V
Sbjct: 227 EPFEKNFYTQHDDIAALDDEQVRELRRTLG-VKVTGPSPPKP-VTSFGHFGFDEQLIKAV 284
Query: 393 TMTETSQP 400
E +QP
Sbjct: 285 RKAEYTQP 292
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 215 (80.7 bits), Expect = 3.9e-33, Sum P(4) = 3.9e-33
Identities = 55/142 (38%), Positives = 82/142 (57%)
Query: 257 RNKLY--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
R K Y +L+LAPTRELA+Q+ + V+ V GG T +Q+R L + H+LV
Sbjct: 255 RRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLV 314
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + ++ G L + K YLV+DE DRM++ G P+++ I+++ TM R
Sbjct: 315 ATPGRLVDMMERGKIGL-DFCK--YLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RH 370
Query: 375 TMIESGHFPELKNILDRVTMTE 396
TM+ S FP+ +L R + E
Sbjct: 371 TMMFSATFPKEIQMLARDFLDE 392
Score = 213 (80.0 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 52/127 (40%), Positives = 76/127 (59%)
Query: 874 RNKLY--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
R K Y +L+LAPTRELA+Q+ + V+ V GG T +Q+R L + H+LV
Sbjct: 255 RRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLV 314
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + ++ G L + K YLV+DE DRM++ G P+++ I+++ TM R
Sbjct: 315 ATPGRLVDMMERGKIGL-DFCK--YLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RH 370
Query: 992 TFVFSAT 998
T +FSAT
Sbjct: 371 TMMFSAT 377
Score = 197 (74.4 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 52/165 (31%), Positives = 84/165 (50%)
Query: 1046 KIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGR---TLVFCNSISSVKRLTQLLTMLK 1101
++G T + +T+ + + +K S+L +L GR TLVF + L L +
Sbjct: 400 RVGSTSENITQKVVWVEELDKRSFLLD-LLNATGRDSLTLVFVETKKGADSLENFLFQER 458
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
+ +H +Q+ R + L +FR IL+AT VAARGLDI ++HVI++ +P E Y
Sbjct: 459 YACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEY 518
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDF 1205
+HR GRT R N GL + + + + L E K ++P +
Sbjct: 519 VHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSW 563
Score = 193 (73.0 bits), Expect = 3.9e-33, Sum P(4) = 3.9e-33
Identities = 54/158 (34%), Positives = 82/158 (51%)
Query: 491 TLCEEIQDLLNIKSPKIVDLTE-KIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGR-- 546
T +EIQ L + + L ++G T + +T+ + + +K S+L +L GR
Sbjct: 377 TFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLD-LLNATGRDS 435
Query: 547 -TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
TLVF + L L + + +H +Q+ R + L +FR IL+AT VAA
Sbjct: 436 LTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAA 495
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
RGLDI ++HVI++ +P E Y+HR GRT R N GL
Sbjct: 496 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 533
Score = 121 (47.7 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 38/138 (27%), Positives = 65/138 (47%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+L+LAPTRELA+Q+ + V+ V GG T +Q+R L + H+LVATPG L
Sbjct: 262 SLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRL- 320
Query: 1416 LKRIDLAK-SIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
+ ++ K +++ + + + D L+ + ++ + PK R + S
Sbjct: 321 VDMMERGKIGLDFCKYLVL-DEADRMLDMGFEPQIRRIVEQDTMPPKG-VRHTMMFSATF 378
Query: 1475 VSKRKELQSLLGKSVQSY 1492
KE+Q L + Y
Sbjct: 379 P---KEIQMLARDFLDEY 393
Score = 82 (33.9 bits), Expect = 3.9e-33, Sum P(4) = 3.9e-33
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ PT +Q +P + ++D++ A+TGSG T AF +PIL+ I
Sbjct: 193 YTRPTPVQKHAIP-IIKEKRDLMACAQTGSGCTAAFLLPILSQI 235
Score = 82 (33.9 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ PT +Q +P + ++D++ A+TGSG T AF +PIL+ I
Sbjct: 193 YTRPTPVQKHAIP-IIKEKRDLMACAQTGSGCTAAFLLPILSQI 235
Score = 55 (24.4 bits), Expect = 3.9e-33, Sum P(4) = 3.9e-33
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDF 1284
+ ++HR GRT R N GL + + + + L E K ++P +
Sbjct: 516 EEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSW 563
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 206 (77.6 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 44/120 (36%), Positives = 68/120 (56%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
A+I+ PTRELA+Q+ K ++V CV GG +Q+ L + I+V TPGR+
Sbjct: 447 AVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMI 506
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ + + +T L ++ Y+V+DE DRM + G P++ I+D V RQT +FSAT
Sbjct: 507 DMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVR-----PDRQTVMFSAT 561
Score = 205 (77.2 bits), Expect = 5.1e-33, Sum P(3) = 5.1e-33
Identities = 45/130 (34%), Positives = 70/130 (53%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
A+I+ PTRELA+Q+ K ++V CV GG +Q+ L + I+V TPGR+
Sbjct: 447 AVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMI 506
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH 381
+ + + +T L ++ Y+V+DE DRM + G P++ I+D V RQT++ S
Sbjct: 507 DMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVR-----PDRQTVMFSAT 561
Query: 382 FPELKNILDR 391
FP L R
Sbjct: 562 FPRAMEALAR 571
Score = 167 (63.8 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 37/111 (33%), Positives = 57/111 (51%)
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
Q G ++F + L + L L LH ++Q R ++ F++ +L+AT
Sbjct: 616 QEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVAT 675
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
VAARGLD+ + V++Y P E Y+HR+GRT RA N+G I D+
Sbjct: 676 SVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQ 726
Score = 167 (63.8 bits), Expect = 5.1e-33, Sum P(3) = 5.1e-33
Identities = 37/111 (33%), Positives = 57/111 (51%)
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
Q G ++F + L + L L LH ++Q R ++ F++ +L+AT
Sbjct: 616 QEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVAT 675
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
VAARGLD+ + V++Y P E Y+HR+GRT RA N+G I D+
Sbjct: 676 SVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQ 726
Score = 137 (53.3 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 27/65 (41%), Positives = 45/65 (69%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
WV+ I I+ AL + G++ PT IQS +P A++ +D++G A+TGSGKT+AF +P+
Sbjct: 373 WVQCGISMKILTALKKHGYEKPTPIQSQAIP-AIMNGRDLIGIAKTGSGKTIAFLLPMFR 431
Query: 213 GIVNK 217
I+++
Sbjct: 432 HIMDQ 436
Score = 137 (53.3 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 27/65 (41%), Positives = 45/65 (69%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
WV+ I I+ AL + G++ PT IQS +P A++ +D++G A+TGSGKT+AF +P+
Sbjct: 373 WVQCGISMKILTALKKHGYEKPTPIQSQAIP-AIMNGRDLIGIAKTGSGKTIAFLLPMFR 431
Query: 830 GIVNK 834
I+++
Sbjct: 432 HIMDQ 436
Score = 108 (43.1 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A+I+ PTRELA+Q+ K ++V CV GG +Q+ L + I+V TPG +
Sbjct: 447 AVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRM 505
Score = 71 (30.1 bits), Expect = 3.4e-23, Sum P(3) = 3.4e-23
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDE 1264
N ++++HR+GRT RA N+G I D+
Sbjct: 697 NHYEDYVHRAGRTGRAGNKGFAYTFITEDQ 726
Score = 53 (23.7 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 331 LTELYKINYLVIDETDRMIE--SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388
+ EL + +++ RMI+ + + + N L RVT + + M + G P++ I
Sbjct: 488 IAELKRGAEIIVCTPGRMIDMLAANNGRVTN-LRRVTYVVLDEADR-MFDMGFEPQVMRI 545
Query: 389 LDRVTMTETSQPRQTFVFSAT 409
+D V RQT +FSAT
Sbjct: 546 VDNVR-----PDRQTVMFSAT 561
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 200 (75.5 bits), Expect = 4.2e-33, Sum P(3) = 4.2e-33
Identities = 50/128 (39%), Positives = 75/128 (58%)
Query: 876 KLYALILAPTRELAIQVQN--HILDAGKYT--PVKVACVVGGMSTEKQLRILNKCPHILV 931
K AL+L PTRELA+QV H L + T P+ + + GG++ E+QL L+ P ++V
Sbjct: 95 KPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVV 154
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + H L I +LV+DE DR++E G +P+++ + M + +Q
Sbjct: 155 ATPGRLLDLCTQSHISLDA---IKHLVLDEADRLLEMGFWPDMQKL-----MAMMPKRKQ 206
Query: 992 TFVFSATL 999
T +FSATL
Sbjct: 207 TLLFSATL 214
Score = 191 (72.3 bits), Expect = 4.6e-32, Sum P(3) = 4.6e-32
Identities = 48/130 (36%), Positives = 74/130 (56%)
Query: 259 KLYALILAPTRELAIQVQN--HILDAGKYT--PVKVACVVGGMSTEKQLRILNKCPHILV 314
K AL+L PTRELA+QV H L + T P+ + + GG++ E+QL L+ P ++V
Sbjct: 95 KPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVV 154
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + H L I +LV+DE DR++E G +P+++ + M + +Q
Sbjct: 155 ATPGRLLDLCTQSHISLDA---IKHLVLDEADRLLEMGFWPDMQKL-----MAMMPKRKQ 206
Query: 375 TMIESGHFPE 384
T++ S PE
Sbjct: 207 TLLFSATLPE 216
Score = 177 (67.4 bits), Expect = 4.2e-33, Sum P(3) = 4.2e-33
Identities = 49/189 (25%), Positives = 87/189 (46%)
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVF 1083
++ L L P V+ + + + + E L K L + Q+ + LVF
Sbjct: 217 ALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKGSKAQALIALLKQYQWPQVLVF 276
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
++ + + L + LH +Q R + L F+ +L+ATD+ ARG+ +
Sbjct: 277 ISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHV 336
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK---V 1200
+ VI+ +P ++ +Y+HR GRTARA +GL + L+ E+P + N + V
Sbjct: 337 DALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLTARALPLV 396
Query: 1201 DLPDFPIDE 1209
L DFP+ +
Sbjct: 397 FLADFPVTD 405
Score = 171 (65.3 bits), Expect = 1.9e-31, Sum P(3) = 1.9e-31
Identities = 46/168 (27%), Positives = 79/168 (47%)
Query: 491 TLCEEIQDL---LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-R 546
TL E + L L P V+ + + + + E L K L + Q+ +
Sbjct: 213 TLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKGSKAQALIALLKQYQWPQ 272
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
LVF ++ + + L + LH +Q R + L F+ +L+ATD+ AR
Sbjct: 273 VLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMAR 332
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
G+ + + VI+ +P ++ +Y+HR GRTARA +GL + L+ E+P
Sbjct: 333 GIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMP 380
Score = 116 (45.9 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 1356 ALILAPTRELAIQVQN--HILDAGKYT--PVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
AL+L PTRELA+QV H L + T P+ + + GG++ E+QL L+ P ++VATP
Sbjct: 98 ALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATP 157
Query: 1412 GAL 1414
G L
Sbjct: 158 GRL 160
Score = 115 (45.5 bits), Expect = 4.2e-33, Sum P(3) = 4.2e-33
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
S + + + + + + + + +AL + K PT++Q + +P A+LA +D++ ++TGS
Sbjct: 7 SPSPESYPESLTFAELGLNAALRKALPTR-LKHPTRVQQLAIP-AILAGRDLLALSQTGS 64
Query: 201 GKTLAFGIPIL 211
GKT AFG+P+L
Sbjct: 65 GKTFAFGLPLL 75
Score = 115 (45.5 bits), Expect = 4.2e-33, Sum P(3) = 4.2e-33
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
S + + + + + + + + +AL + K PT++Q + +P A+LA +D++ ++TGS
Sbjct: 7 SPSPESYPESLTFAELGLNAALRKALPTR-LKHPTRVQQLAIP-AILAGRDLLALSQTGS 64
Query: 818 GKTLAFGIPIL 828
GKT AFG+P+L
Sbjct: 65 GKTFAFGLPLL 75
Score = 75 (31.5 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK---VDLPDFPIDE 1288
++HR GRTARA +GL + L+ E+P + N + V L DFP+ +
Sbjct: 354 YVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLTARALPLVFLADFPVTD 405
Score = 47 (21.6 bits), Expect = 4.5e-17, Sum P(3) = 4.5e-17
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
++E G +P+++ + M + +QT +FSATL
Sbjct: 185 LLEMGFWPDMQKL-----MAMMPKRKQTLLFSATL 214
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 200 (75.5 bits), Expect = 4.2e-33, Sum P(3) = 4.2e-33
Identities = 50/128 (39%), Positives = 75/128 (58%)
Query: 876 KLYALILAPTRELAIQVQN--HILDAGKYT--PVKVACVVGGMSTEKQLRILNKCPHILV 931
K AL+L PTRELA+QV H L + T P+ + + GG++ E+QL L+ P ++V
Sbjct: 95 KPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVV 154
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + H L I +LV+DE DR++E G +P+++ + M + +Q
Sbjct: 155 ATPGRLLDLCTQSHISLDA---IKHLVLDEADRLLEMGFWPDMQKL-----MAMMPKRKQ 206
Query: 992 TFVFSATL 999
T +FSATL
Sbjct: 207 TLLFSATL 214
Score = 191 (72.3 bits), Expect = 4.6e-32, Sum P(3) = 4.6e-32
Identities = 48/130 (36%), Positives = 74/130 (56%)
Query: 259 KLYALILAPTRELAIQVQN--HILDAGKYT--PVKVACVVGGMSTEKQLRILNKCPHILV 314
K AL+L PTRELA+QV H L + T P+ + + GG++ E+QL L+ P ++V
Sbjct: 95 KPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVV 154
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + H L I +LV+DE DR++E G +P+++ + M + +Q
Sbjct: 155 ATPGRLLDLCTQSHISLDA---IKHLVLDEADRLLEMGFWPDMQKL-----MAMMPKRKQ 206
Query: 375 TMIESGHFPE 384
T++ S PE
Sbjct: 207 TLLFSATLPE 216
Score = 177 (67.4 bits), Expect = 4.2e-33, Sum P(3) = 4.2e-33
Identities = 49/189 (25%), Positives = 87/189 (46%)
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVF 1083
++ L L P V+ + + + + E L K L + Q+ + LVF
Sbjct: 217 ALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKGSKAQALIALLKQYQWPQVLVF 276
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
++ + + L + LH +Q R + L F+ +L+ATD+ ARG+ +
Sbjct: 277 ISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHV 336
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK---V 1200
+ VI+ +P ++ +Y+HR GRTARA +GL + L+ E+P + N + V
Sbjct: 337 DALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLTARALPLV 396
Query: 1201 DLPDFPIDE 1209
L DFP+ +
Sbjct: 397 FLADFPVTD 405
Score = 171 (65.3 bits), Expect = 1.9e-31, Sum P(3) = 1.9e-31
Identities = 46/168 (27%), Positives = 79/168 (47%)
Query: 491 TLCEEIQDL---LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-R 546
TL E + L L P V+ + + + + E L K L + Q+ +
Sbjct: 213 TLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKGSKAQALIALLKQYQWPQ 272
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
LVF ++ + + L + LH +Q R + L F+ +L+ATD+ AR
Sbjct: 273 VLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMAR 332
Query: 607 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
G+ + + VI+ +P ++ +Y+HR GRTARA +GL + L+ E+P
Sbjct: 333 GIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMP 380
Score = 116 (45.9 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 1356 ALILAPTRELAIQVQN--HILDAGKYT--PVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
AL+L PTRELA+QV H L + T P+ + + GG++ E+QL L+ P ++VATP
Sbjct: 98 ALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATP 157
Query: 1412 GAL 1414
G L
Sbjct: 158 GRL 160
Score = 115 (45.5 bits), Expect = 4.2e-33, Sum P(3) = 4.2e-33
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
S + + + + + + + + +AL + K PT++Q + +P A+LA +D++ ++TGS
Sbjct: 7 SPSPESYPESLTFAELGLNAALRKALPTR-LKHPTRVQQLAIP-AILAGRDLLALSQTGS 64
Query: 201 GKTLAFGIPIL 211
GKT AFG+P+L
Sbjct: 65 GKTFAFGLPLL 75
Score = 115 (45.5 bits), Expect = 4.2e-33, Sum P(3) = 4.2e-33
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
S + + + + + + + + +AL + K PT++Q + +P A+LA +D++ ++TGS
Sbjct: 7 SPSPESYPESLTFAELGLNAALRKALPTR-LKHPTRVQQLAIP-AILAGRDLLALSQTGS 64
Query: 818 GKTLAFGIPIL 828
GKT AFG+P+L
Sbjct: 65 GKTFAFGLPLL 75
Score = 75 (31.5 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK---VDLPDFPIDE 1288
++HR GRTARA +GL + L+ E+P + N + V L DFP+ +
Sbjct: 354 YVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLTARALPLVFLADFPVTD 405
Score = 47 (21.6 bits), Expect = 4.5e-17, Sum P(3) = 4.5e-17
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
++E G +P+++ + M + +QT +FSATL
Sbjct: 185 LLEMGFWPDMQKL-----MAMMPKRKQTLLFSATL 214
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 221 (82.9 bits), Expect = 4.3e-33, Sum P(3) = 4.3e-33
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 415 KEEAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 474
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 475 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 534
Query: 1181 IES--DEIPLYIKMFNSLEKKVDLP 1203
I DE L LE K +P
Sbjct: 535 INKACDESVLMDLKALLLEAKQKVP 559
Score = 218 (81.8 bits), Expect = 5.9e-31, Sum P(4) = 5.9e-31
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 528 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587
K + K YL + + P L+F + V + + L + + +H +Q +R K +
Sbjct: 415 KEEAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 474
Query: 588 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647
+ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT R+ N G+
Sbjct: 475 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 534
Query: 648 I 648
I
Sbjct: 535 I 535
Score = 157 (60.3 bits), Expect = 4.3e-33, Sum P(3) = 4.3e-33
Identities = 44/128 (34%), Positives = 65/128 (50%)
Query: 878 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
Y LI+ P+RELA Q +L + A +GG+S ++Q+ + HI+V
Sbjct: 258 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMV 317
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 318 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 369
Query: 992 TFVFSATL 999
T +FSAT+
Sbjct: 370 TLLFSATM 377
Score = 146 (56.5 bits), Expect = 2.7e-31, Sum P(4) = 2.7e-31
Identities = 42/130 (32%), Positives = 64/130 (49%)
Query: 261 YALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
Y LI+ P+RELA Q +L + A +GG+S ++Q+ + HI+V
Sbjct: 258 YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMV 317
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + +Q + L YL +DE DRMI+ G +++ I Q RQ
Sbjct: 318 ATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK----GQ-RQ 369
Query: 375 TMIESGHFPE 384
T++ S P+
Sbjct: 370 TLLFSATMPK 379
Score = 121 (47.7 bits), Expect = 4.3e-33, Sum P(3) = 4.3e-33
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ +P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 184 EMKLPAAILRGLKKKGILHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 239
Score = 121 (47.7 bits), Expect = 4.3e-33, Sum P(3) = 4.3e-33
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ +P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 184 EMKLPAAILRGLKKKGILHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 239
Score = 86 (35.3 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 1337 IQPNQLLIFESRNLRYSWDALILAPTRELAIQVQN------HILDAGKYTPVKVACVVGG 1390
++ + L F R Y LI+ P+RELA Q +L + A +GG
Sbjct: 243 LEQEKRLPFSKREGPYG---LIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGG 299
Query: 1391 MSTEKQLRILNKCPHILVATPGAL 1414
+S ++Q+ + HI+VATPG L
Sbjct: 300 VSLKEQMETMRHGVHIMVATPGRL 323
Score = 64 (27.6 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIES--DEIPLYIKMFNSLEKKVDLP 1282
+N++HR GRT R+ N G+ I DE L LE K +P
Sbjct: 513 ENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 559
Score = 37 (18.1 bits), Expect = 2.7e-31, Sum P(4) = 2.7e-31
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 401 RQTFVFSATL 410
RQT +FSAT+
Sbjct: 368 RQTLLFSATM 377
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 233 (87.1 bits), Expect = 4.4e-33, Sum P(3) = 4.4e-33
Identities = 71/231 (30%), Positives = 118/231 (51%)
Query: 1027 KRLQDLLNI---KSPKIV--DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 1080
++++DL I K P V D +++ L + ++C +++ L+ F+ ++ +
Sbjct: 373 RKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 432
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
+VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVAARG
Sbjct: 433 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARG 492
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLE 1197
LDIP ++ ++ Y P + YIHR GRTAR N G L+++ +E+ Y+K +
Sbjct: 493 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLK-----Q 547
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTA 1248
KV L F S +S I+ + LE I+KN +LH+S + A
Sbjct: 548 SKVPLNQFDFSWSKVSDIQSQ---------LEKLIEKNY---FLHKSAQEA 586
Score = 218 (81.8 bits), Expect = 5.6e-30, Sum P(3) = 5.6e-30
Identities = 53/170 (31%), Positives = 91/170 (53%)
Query: 491 TLCEEIQDLLNI---KSPKIV--DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-P 544
T +++DL I K P V D +++ L + ++C +++ L+ F+ ++
Sbjct: 370 TQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRK 429
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+ +VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVA
Sbjct: 430 KKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVA 489
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTVVLIESDEI 653
ARGLDIP ++ ++ Y P + YIHR GRTAR N G ++++ +E+
Sbjct: 490 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 539
Score = 151 (58.2 bits), Expect = 4.4e-33, Sum P(3) = 4.4e-33
Identities = 48/130 (36%), Positives = 69/130 (53%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
RN LIL+PTRELA+Q + + + ++GG + +++ L +I+VAT
Sbjct: 253 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVAT 312
Query: 934 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
PGRL L H T +YK + LVIDE DR+++ G ELK I+ + R
Sbjct: 313 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPAR-----R 362
Query: 991 QTFVFSATLT 1000
QT +FSAT T
Sbjct: 363 QTMLFSATQT 372
Score = 137 (53.3 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 47/147 (31%), Positives = 74/147 (50%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
RN LIL+PTRELA+Q + + + ++GG + +++ L +I+VAT
Sbjct: 253 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVAT 312
Query: 317 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
PGRL L H T +YK + LVIDE DR+++ G ELK I+ + R
Sbjct: 313 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPAR-----R 362
Query: 374 QTMIESGHFPELKNILDRVTMTETSQP 400
QTM+ S + + + D ++ +P
Sbjct: 363 QTMLFSA--TQTRKVEDLARISLKKEP 387
Score = 116 (45.9 bits), Expect = 4.4e-33, Sum P(3) = 4.4e-33
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 158 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+ E ++A+ + GFK T+IQ + P LL +D++ AA+TGSGKTLAF IP++ IV
Sbjct: 190 VNENTLKAIEEMGFKHMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPVIELIV- 246
Query: 217 KLE 219
KL+
Sbjct: 247 KLK 249
Score = 116 (45.9 bits), Expect = 4.4e-33, Sum P(3) = 4.4e-33
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 775 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+ E ++A+ + GFK T+IQ + P LL +D++ AA+TGSGKTLAF IP++ IV
Sbjct: 190 VNENTLKAIEEMGFKHMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPVIELIV- 246
Query: 834 KLE 836
KL+
Sbjct: 247 KLK 249
Score = 77 (32.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL+PTRELA+Q + + + ++GG + +++ L +I+VATPG L
Sbjct: 259 LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVATPGRL 316
Score = 75 (31.5 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 1237 PDNWLHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLEKKVDLPDFPIDESVLSL 1293
P ++HR GRTAR N G L+++ +E+ Y+K + KV L F S +S
Sbjct: 510 PKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLK-----QSKVPLNQFDFSWSKVSD 564
Query: 1294 IKKRIDLAKSIE 1305
I+ +++ K IE
Sbjct: 565 IQSQLE--KLIE 574
Score = 40 (19.1 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
+++ G ELK I+ + RQT +FSAT T
Sbjct: 342 ILDVGFEEELKQIIKLLPAR-----RQTMLFSATQT 372
Score = 39 (18.8 bits), Expect = 2.3e-14, Sum P(4) = 2.3e-14
Identities = 12/71 (16%), Positives = 34/71 (47%)
Query: 438 KRLQDLLNI---KSPKIV--DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492
++++DL I K P V D +++ L + ++C +++ L+ F+ ++ + +
Sbjct: 373 RKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 432
Query: 493 CEEIQDLLNIK 503
+++K
Sbjct: 433 MVFFSSCMSVK 443
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 199 (75.1 bits), Expect = 4.5e-33, Sum P(3) = 4.5e-33
Identities = 51/188 (27%), Positives = 89/188 (47%)
Query: 1024 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 1083
P+I++L + P V K + + +++S I + D+ ++ +VF
Sbjct: 199 PAIRKLSAKY-LHDPFEVTCKAKTAVAENISQSYIQVAR-KMDALTRVLEVEPFEAMIVF 256
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
+ + + + + L S + + Q QR + + RD + IL+ATDVAARGLD+
Sbjct: 257 VRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDV 316
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
I HV++Y +P +E Y+HR GRT RA G L+ + E+ L + + + +
Sbjct: 317 ERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTLTEA 376
Query: 1204 DFPIDESV 1211
P E V
Sbjct: 377 QLPTVEDV 384
Score = 189 (71.6 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
Identities = 38/108 (35%), Positives = 60/108 (55%)
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
+VF + + + + + L S + + Q QR + + RD + IL+ATDVAARG
Sbjct: 254 IVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARG 313
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LD+ I HV++Y +P +E Y+HR GRT RA G ++ + E+ L
Sbjct: 314 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHL 361
Score = 163 (62.4 bits), Expect = 4.5e-33, Sum P(3) = 4.5e-33
Identities = 42/122 (34%), Positives = 69/122 (56%)
Query: 879 ALILAPTRELAIQVQNHILDAGKY-TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
AL+L PTRELA+QV G Y + + V + GG S QL L + ++V TPGR+
Sbjct: 84 ALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRM 143
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+ ++ L+ ++++LV+DE D M+ G +++ IL +ET + +Q +FSA
Sbjct: 144 IDHLERATLDLS---RVDFLVLDEADEMLTMGFADDVERIL-----SETPEYKQVALFSA 195
Query: 998 TL 999
T+
Sbjct: 196 TM 197
Score = 150 (57.9 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 40/123 (32%), Positives = 66/123 (53%)
Query: 262 ALILAPTRELAIQVQNHILDAGKY-TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
AL+L PTRELA+QV G Y + + V + GG S QL L + ++V TPGR+
Sbjct: 84 ALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRM 143
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
+ ++ L+ ++++LV+DE D M+ G +++ IL +ET + +Q + S
Sbjct: 144 IDHLERATLDLS---RVDFLVLDEADEMLTMGFADDVERIL-----SETPEYKQVALFSA 195
Query: 381 HFP 383
P
Sbjct: 196 TMP 198
Score = 136 (52.9 bits), Expect = 4.5e-33, Sum P(3) = 4.5e-33
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
A + I ++RA+ G+++PT IQ+ +P AL+A D+VG A+TG+GKT AF IP+
Sbjct: 13 ATFADLQIHPRVLRAIGDVGYESPTAIQAATIP-ALMAGSDVVGLAQTGTGKTAAFAIPM 71
Query: 211 LTGI 214
L+ I
Sbjct: 72 LSKI 75
Score = 136 (52.9 bits), Expect = 4.5e-33, Sum P(3) = 4.5e-33
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
A + I ++RA+ G+++PT IQ+ +P AL+A D+VG A+TG+GKT AF IP+
Sbjct: 13 ATFADLQIHPRVLRAIGDVGYESPTAIQAATIP-ALMAGSDVVGLAQTGTGKTAAFAIPM 71
Query: 828 LTGI 831
L+ I
Sbjct: 72 LSKI 75
Score = 99 (39.9 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKY-TPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+L PTRELA+QV G Y + + V + GG S QL L + ++V TPG +
Sbjct: 84 ALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRM 143
Query: 1415 --SLKR--IDLAKSIEYL 1428
L+R +DL++ +++L
Sbjct: 144 IDHLERATLDLSR-VDFL 160
Score = 69 (29.3 bits), Expect = 2.2e-19, Sum P(3) = 2.2e-19
Identities = 23/90 (25%), Positives = 40/90 (44%)
Query: 1202 LPDFPIDESVLSLIKKR-IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLI 1260
L D ID V + + R +D+ + L I + ++++HR GRT RA G L+ +
Sbjct: 296 LRDGDIDILVATDVAARGLDVERISHVLNYDIPHDT-ESYVHRIGRTGRAGRSGAALIFV 354
Query: 1261 ESDEIPLYIKMFNSLEKKVDLPDFPIDESV 1290
E+ L + + + + P E V
Sbjct: 355 SPRELHLLKAIEKATRQTLTEAQLPTVEDV 384
Score = 46 (21.3 bits), Expect = 5.6e-21, Sum P(3) = 5.6e-21
Identities = 19/71 (26%), Positives = 33/71 (46%)
Query: 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399
+V+ RMI+ H L RV + + M+ G +++ IL +ET +
Sbjct: 135 VVVGTPGRMID--HLERATLDLSRVDFLVLDEADE-MLTMGFADDVERIL-----SETPE 186
Query: 400 PRQTFVFSATL 410
+Q +FSAT+
Sbjct: 187 YKQVALFSATM 197
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 237 (88.5 bits), Expect = 4.9e-33, Sum P(3) = 4.9e-33
Identities = 76/269 (28%), Positives = 132/269 (49%)
Query: 1027 KRLQDLLNI---KSPKIVDLTE-KIGITKT-LTESKILCKHDEKDSYLYYFILQHPGRTL 1081
++++DL I K P V + + K T L + ++C +++ L+ F+ ++ + L
Sbjct: 366 RKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 425
Query: 1082 -VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVAARG
Sbjct: 426 MVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARG 485
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLE 1197
LDIP ++ ++ Y P + YIHR GRTAR N G L+++ +E+ Y+K +
Sbjct: 486 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLK-----Q 540
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWL-----HRSGRTARANN 1252
KV L +F S +S I+ +++ Y K + +++ H + NN
Sbjct: 541 SKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNN 600
Query: 1253 EGLTLVLIESD-EIPLYIKM-FNSLEKKV 1279
L V + ++P ++ + NS + KV
Sbjct: 601 LNLPQVALSFGFKVPPFVDLNVNSNDGKV 629
Score = 215 (80.7 bits), Expect = 3.7e-29, Sum P(3) = 3.7e-29
Identities = 55/170 (32%), Positives = 91/170 (53%)
Query: 491 TLCEEIQDLLNI---KSPKIVDLTE-KIGITKT-LTESKILCKHDEKDSYLYYFILQHPG 545
T +++DL I K P V + + K T L + ++C +++ L+ F+ ++
Sbjct: 363 TQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRK 422
Query: 546 RTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+ L VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVA
Sbjct: 423 KKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVA 482
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTVVLIESDEI 653
ARGLDIP ++ ++ Y P + YIHR GRTAR N G ++++ +E+
Sbjct: 483 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 532
Score = 153 (58.9 bits), Expect = 4.9e-33, Sum P(3) = 4.9e-33
Identities = 49/130 (37%), Positives = 70/130 (53%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
RN LIL+PTRELA+Q + + + ++GG + + + L +I+VAT
Sbjct: 246 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVAT 305
Query: 934 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
PGRL L H T +YK + LVIDE DR+++ G ELK I+ ++ T R
Sbjct: 306 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII-KLLPTR----R 355
Query: 991 QTFVFSATLT 1000
QT +FSAT T
Sbjct: 356 QTMLFSATQT 365
Score = 139 (54.0 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 48/147 (32%), Positives = 75/147 (51%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
RN LIL+PTRELA+Q + + + ++GG + + + L +I+VAT
Sbjct: 246 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVAT 305
Query: 317 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
PGRL L H T +YK + LVIDE DR+++ G ELK I+ ++ T R
Sbjct: 306 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII-KLLPTR----R 355
Query: 374 QTMIESGHFPELKNILDRVTMTETSQP 400
QTM+ S + + + D ++ +P
Sbjct: 356 QTMLFSA--TQTRKVEDLARISLKKEP 380
Score = 109 (43.4 bits), Expect = 4.9e-33, Sum P(3) = 4.9e-33
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 158 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E +RA+ + GF T+IQ + P LL +D++ AA+TGSGKTLAF IP + IV
Sbjct: 183 VNENTLRAIKEMGFTNMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPAVELIV 239
Score = 109 (43.4 bits), Expect = 4.9e-33, Sum P(3) = 4.9e-33
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 775 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E +RA+ + GF T+IQ + P LL +D++ AA+TGSGKTLAF IP + IV
Sbjct: 183 VNENTLRAIKEMGFTNMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPAVELIV 239
Score = 43 (20.2 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
+++ G ELK I+ ++ T RQT +FSAT T
Sbjct: 335 ILDVGFEEELKQII-KLLPTR----RQTMLFSATQT 365
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 237 (88.5 bits), Expect = 5.1e-33, Sum P(3) = 5.1e-33
Identities = 76/269 (28%), Positives = 132/269 (49%)
Query: 1027 KRLQDLLNI---KSPKIVDLTE-KIGITKT-LTESKILCKHDEKDSYLYYFILQHPGRTL 1081
++++DL I K P V + + K T L + ++C +++ L+ F+ ++ + L
Sbjct: 370 RKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 429
Query: 1082 -VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVAARG
Sbjct: 430 MVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARG 489
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLE 1197
LDIP ++ ++ Y P + YIHR GRTAR N G L+++ +E+ Y+K +
Sbjct: 490 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLK-----Q 544
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWL-----HRSGRTARANN 1252
KV L +F S +S I+ +++ Y K + +++ H + NN
Sbjct: 545 SKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNN 604
Query: 1253 EGLTLVLIESD-EIPLYIKM-FNSLEKKV 1279
L V + ++P ++ + NS + KV
Sbjct: 605 LNLPQVALSFGFKVPPFVDLNVNSNDGKV 633
Score = 215 (80.7 bits), Expect = 3.8e-29, Sum P(3) = 3.8e-29
Identities = 55/170 (32%), Positives = 91/170 (53%)
Query: 491 TLCEEIQDLLNI---KSPKIVDLTE-KIGITKT-LTESKILCKHDEKDSYLYYFILQHPG 545
T +++DL I K P V + + K T L + ++C +++ L+ F+ ++
Sbjct: 367 TQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRK 426
Query: 546 RTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+ L VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVA
Sbjct: 427 KKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVA 486
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTVVLIESDEI 653
ARGLDIP ++ ++ Y P + YIHR GRTAR N G ++++ +E+
Sbjct: 487 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 536
Score = 153 (58.9 bits), Expect = 5.1e-33, Sum P(3) = 5.1e-33
Identities = 49/130 (37%), Positives = 70/130 (53%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
RN LIL+PTRELA+Q + + + ++GG + + + L +I+VAT
Sbjct: 250 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVAT 309
Query: 934 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
PGRL L H T +YK + LVIDE DR+++ G ELK I+ ++ T R
Sbjct: 310 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII-KLLPTR----R 359
Query: 991 QTFVFSATLT 1000
QT +FSAT T
Sbjct: 360 QTMLFSATQT 369
Score = 139 (54.0 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 48/147 (32%), Positives = 75/147 (51%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
RN LIL+PTRELA+Q + + + ++GG + + + L +I+VAT
Sbjct: 250 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVAT 309
Query: 317 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
PGRL L H T +YK + LVIDE DR+++ G ELK I+ ++ T R
Sbjct: 310 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII-KLLPTR----R 359
Query: 374 QTMIESGHFPELKNILDRVTMTETSQP 400
QTM+ S + + + D ++ +P
Sbjct: 360 QTMLFSA--TQTRKVEDLARISLKKEP 384
Score = 109 (43.4 bits), Expect = 5.1e-33, Sum P(3) = 5.1e-33
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 158 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E +RA+ + GF T+IQ + P LL +D++ AA+TGSGKTLAF IP + IV
Sbjct: 187 VNENTLRAIKEMGFTNMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPAVELIV 243
Score = 109 (43.4 bits), Expect = 5.1e-33, Sum P(3) = 5.1e-33
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 775 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E +RA+ + GF T+IQ + P LL +D++ AA+TGSGKTLAF IP + IV
Sbjct: 187 VNENTLRAIKEMGFTNMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPAVELIV 243
Score = 43 (20.2 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
+++ G ELK I+ ++ T RQT +FSAT T
Sbjct: 339 ILDVGFEEELKQII-KLLPTR----RQTMLFSATQT 369
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 333 (122.3 bits), Expect = 5.3e-33, Sum P(2) = 5.3e-33
Identities = 99/331 (29%), Positives = 158/331 (47%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
A+IL+PTRELAIQ + D + T ++ +VGG S E Q L + P I++ATPGRL
Sbjct: 303 AVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLM 362
Query: 939 E-FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
++ G L K+ Y+V DE DR+ E G +L IL ++ S+ RQT +FSA
Sbjct: 363 HHLLETG----MSLSKVQYIVFDEADRLFEMGFNEQLTEILSKL-----SENRQTLLFSA 413
Query: 998 TLTHXXXXXXXXXXXX-----XXXXXXXXXDPSIK----RLQDLLNIKSPKIVDLTEKIG 1048
TL + S+ R ++ L + + D+ K
Sbjct: 414 TLPSLLVDFVRAGLNNPKLINLDTDTKISENLSLSFFTLRHEEKLGVLLFLLKDIIYKKP 473
Query: 1049 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108
T + ++E + Q T++F ++ V+ + LL + +H
Sbjct: 474 QLPTTETTTTTTTNNESNQQQ-----QKKSSTIIFVSTKYHVEFIHILLERAGIASTYIH 528
Query: 1109 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
++ R NL +FR +++ TD+AARG+DIP +++VI++ P +I+IHR GR
Sbjct: 529 GYLDPVARKINLAKFRSHQVGVMVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRVGRV 588
Query: 1169 ARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
ARA G+ L+ DE+P I + L +K
Sbjct: 589 ARAGRSGIAYSLVSPDEVPYMIDLHLYLGRK 619
Score = 193 (73.0 bits), Expect = 4.6e-31, Sum P(4) = 4.6e-31
Identities = 49/125 (39%), Positives = 70/125 (56%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
A+IL+PTRELAIQ + D + T ++ +VGG S E Q L + P I++ATPGRL
Sbjct: 303 AVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLM 362
Query: 322 E-FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
++ G L K+ Y+V DE DR+ E G +L IL ++ S+ RQT++ S
Sbjct: 363 HHLLETG----MSLSKVQYIVFDEADRLFEMGFNEQLTEILSKL-----SENRQTLLFSA 413
Query: 381 HFPEL 385
P L
Sbjct: 414 TLPSL 418
Score = 186 (70.5 bits), Expect = 4.6e-31, Sum P(4) = 4.6e-31
Identities = 54/184 (29%), Positives = 92/184 (50%)
Query: 480 LYYFILQHPGR--TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 537
L +F L+H + L ++D++ K P++ TE T T ES + +K S
Sbjct: 447 LSFFTLRHEEKLGVLLFLLKDII-YKKPQL-PTTETTTTTTTNNESN---QQQQKKS--- 498
Query: 538 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597
T++F ++ V+ + LL + +H ++ R NL +FR +
Sbjct: 499 --------STIIFVSTKYHVEFIHILLERAGIASTYIHGYLDPVARKINLAKFRSHQVGV 550
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKT 657
++ TD+AARG+DIP +++VI++ P +I+IHR GR ARA G+ L+ DE+P
Sbjct: 551 MVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVSPDEVPYMI 610
Query: 658 KFNL 661
+L
Sbjct: 611 DLHL 614
Score = 122 (48.0 bits), Expect = 5.3e-33, Sum P(2) = 5.3e-33
Identities = 38/116 (32%), Positives = 55/116 (47%)
Query: 713 NDPDDQVNKTEEIQSDEPHSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQMAEWVK 772
N + NK EEI+S E N E E TS + + +
Sbjct: 188 NKKSKKSNKKEEIESSEKFESFPM----------DENNEQEEETTSKKKK---KTGGFQS 234
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ + +++A+ +KGF PT IQ +P +L DIVG A TGSGKT AF IP++
Sbjct: 235 MDLTKNLLKAILKKGFNVPTPIQRKSIPM-ILDGHDIVGMARTGSGKTGAFVIPMI 289
Score = 122 (48.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A+IL+PTRELAIQ + D + T ++ +VGG S E Q L + P I++ATPG L
Sbjct: 303 AVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLM 362
Query: 1416 LKRIDLAKSIEYLE 1429
++ S+ ++
Sbjct: 363 HHLLETGMSLSKVQ 376
Score = 121 (47.7 bits), Expect = 4.6e-31, Sum P(4) = 4.6e-31
Identities = 38/116 (32%), Positives = 55/116 (47%)
Query: 96 NDPDDQVNKTEEIQSDEPSSXXXXXXXXXXXTYTSANKELLEVDTSNNEDMFVQMAEWVK 155
N + NK EEI+S E N E E TS + + +
Sbjct: 188 NKKSKKSNKKEEIESSEKFESFPM----------DENNEQEEETTSKKKK---KTGGFQS 234
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ + +++A+ +KGF PT IQ +P +L DIVG A TGSGKT AF IP++
Sbjct: 235 MDLTKNLLKAILKKGFNVPTPIQRKSIPM-ILDGHDIVGMARTGSGKTGAFVIPMI 289
Score = 81 (33.6 bits), Expect = 1.4e-21, Sum P(4) = 1.4e-21
Identities = 27/105 (25%), Positives = 49/105 (46%)
Query: 1179 VLIESDEIP-LYIKMF-NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR 1236
+L+E I YI + + + +K++L F + + ++ I L++ I +
Sbjct: 515 ILLERAGIASTYIHGYLDPVARKINLAKFRSHQVGVMVVTDLAARGIDIPLLDNVINFDF 574
Query: 1237 PDN---WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1278
P ++HR GR ARA G+ L+ DE+P I + L +K
Sbjct: 575 PPKEKIFIHRVGRVARAGRSGIAYSLVSPDEVPYMIDLHLYLGRK 619
Score = 51 (23.0 bits), Expect = 1.4e-21, Sum P(4) = 1.4e-21
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 446 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484
+ +PK+++L I++ L+ S +H+EK L + +
Sbjct: 427 LNNPKLINLDTDTKISENLSLSFFTLRHEEKLGVLLFLL 465
Score = 50 (22.7 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
T+L + ++I R++ H E L +V + + + E G +L IL +
Sbjct: 345 TDLARNPDIIIATPGRLMH--HLLETGMSLSKVQYIVFDEADR-LFEMGFNEQLTEILSK 401
Query: 392 VTMTETSQPRQTFVFSATL 410
+ S+ RQT +FSATL
Sbjct: 402 L-----SENRQTLLFSATL 415
Score = 39 (18.8 bits), Expect = 4.6e-31, Sum P(4) = 4.6e-31
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 699 NPSQVEVSELSANTNDPDDQVNKTEEIQSDE 729
N ++++E + + ND DD+ + ++ + +E
Sbjct: 815 NNKDIKMNE-NDDENDDDDEEGENDDDEEEE 844
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 202 (76.2 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 45/119 (37%), Positives = 73/119 (61%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L+PTRELA Q+Q + G+ + + C+ GG QLR L + I+VATPGRL +
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+++ L + I+YLV+DE DRM++ G P+++ I+ + T+ RQT +++AT
Sbjct: 294 ILEMRRISLRQ---ISYLVLDEADRMLDMGFEPQIRKIVKEIP-TK----RQTLMYTAT 344
Score = 197 (74.4 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 44/122 (36%), Positives = 74/122 (60%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L+PTRELA Q+Q + G+ + + C+ GG QLR L + I+VATPGRL +
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
+++ L + I+YLV+DE DRM++ G P+++ I+ + T+ RQT++ + +
Sbjct: 294 ILEMRRISLRQ---ISYLVLDEADRMLDMGFEPQIRKIVKEIP-TK----RQTLMYTATW 345
Query: 383 PE 384
P+
Sbjct: 346 PK 347
Score = 187 (70.9 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 49/146 (33%), Positives = 77/146 (52%)
Query: 1032 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPG-RTLVFCNSISS 1089
L+N I ++ E + K++T+ + EK L + Q PG + ++FC++
Sbjct: 357 LVNPAQVNIGNVDELVA-NKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRM 415
Query: 1090 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 1149
+LT+ LT + +H +Q +R L++FR +L+ATDVAARGLD+ I V
Sbjct: 416 CDQLTRNLTR-QFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAV 474
Query: 1150 IHYHVPRTSEIYIHRSGRTARANNEG 1175
++Y P E Y+HR GRT RA G
Sbjct: 475 VNYDFPNGVEDYVHRIGRTGRAGATG 500
Score = 187 (70.9 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 49/146 (33%), Positives = 77/146 (52%)
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPG-RTLVFCNSISS 556
L+N I ++ E + K++T+ + EK L + Q PG + ++FC++
Sbjct: 357 LVNPAQVNIGNVDELVA-NKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRM 415
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616
+LT+ LT + +H +Q +R L++FR +L+ATDVAARGLD+ I V
Sbjct: 416 CDQLTRNLTR-QFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAV 474
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEG 642
++Y P E Y+HR GRT RA G
Sbjct: 475 VNYDFPNGVEDYVHRIGRTGRAGATG 500
Score = 130 (50.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS- 1415
L+L+PTRELA Q+Q + G+ + + C+ GG QLR L + I+VATPG L+
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 1416 ---LKRIDLAKSIEYL 1428
++RI L + I YL
Sbjct: 294 ILEMRRISL-RQISYL 308
Score = 110 (43.8 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
P ++R + GF PT IQ+ P A+ R DIV A+TGSGKTL + IP
Sbjct: 166 PPELLREVLSAGFSAPTPIQAQSWPIAMQGR-DIVAIAKTGSGKTLGYLIP 215
Score = 110 (43.8 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
P ++R + GF PT IQ+ P A+ R DIV A+TGSGKTL + IP
Sbjct: 166 PPELLREVLSAGFSAPTPIQAQSWPIAMQGR-DIVAIAKTGSGKTLGYLIP 215
Score = 47 (21.6 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 1235 NRPDNWLHRSGRTARANNEG 1254
N ++++HR GRT RA G
Sbjct: 481 NGVEDYVHRIGRTGRAGATG 500
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 219 (82.2 bits), Expect = 5.9e-33, Sum P(3) = 5.9e-33
Identities = 69/231 (29%), Positives = 114/231 (49%)
Query: 1027 KRLQDL--LNIKSPKIVDLTEKIGITKT---LTESKILCKHDEKDSYLYYFILQH-PGRT 1080
K ++DL L+++ P+ + + EK IT T LT++ + + K + L+ FI H +
Sbjct: 330 KSIRDLARLSLQEPEYISVYEK-DITTTPQNLTQTLCVIPLEMKLNMLFSFIKTHLTSKI 388
Query: 1081 LVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
+VF S V+ + +L + PLH M Q RL+ + F + L ATD+AA
Sbjct: 389 IVFFASCKQVRFAHETFKLLNPGTTLFPLHGKMKQWTRLEVFEDFCKKKAGTLFATDIAA 448
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLD P +E VI P E YIHR GRTAR + G ++ ++ E + + +
Sbjct: 449 RGLDFPAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITILLPSEKDGMVNLMEKQKM 508
Query: 1199 KVDL----PD--FPIDESVLSLIKKRIDLA----KS-IEYLESKIKKNRPD 1238
K ++ P+ ID + S + ++ DL KS + YL S +++ +
Sbjct: 509 KFEILEPNPEKLVSIDSKLSSFLSEKTDLKYLAQKSFVSYLRSVYRQSNKE 559
Score = 208 (78.3 bits), Expect = 6.2e-31, Sum P(3) = 6.2e-31
Identities = 59/171 (34%), Positives = 91/171 (53%)
Query: 491 TLCEEIQDL--LNIKSPKIVDLTEKIGITKT---LTESKILCKHDEKDSYLYYFILQH-P 544
T + I+DL L+++ P+ + + EK IT T LT++ + + K + L+ FI H
Sbjct: 327 TQTKSIRDLARLSLQEPEYISVYEK-DITTTPQNLTQTLCVIPLEMKLNMLFSFIKTHLT 385
Query: 545 GRTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 602
+ +VF S V+ + +L + PLH M Q RL+ + F + L ATD
Sbjct: 386 SKIIVFFASCKQVRFAHETFKLLNPGTTLFPLHGKMKQWTRLEVFEDFCKKKAGTLFATD 445
Query: 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTV-VLIESDE 652
+AARGLD P +E VI P E YIHR GRTAR + G ++ +L+ S++
Sbjct: 446 IAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITILLPSEK 496
Score = 170 (64.9 bits), Expect = 5.9e-33, Sum P(3) = 5.9e-33
Identities = 45/123 (36%), Positives = 74/123 (60%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
A++L+PTRELAIQ+ + + GKY ++GG + +++ +N +IL+ATPGRL
Sbjct: 216 AIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQEKDKINAM-NILIATPGRLL 274
Query: 939 EFIQLGH-FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
+ + + F + L KI LV+DE DR+++ G L +I++ + + RQT +FSA
Sbjct: 275 QHMDETYGFDCSNL-KI--LVLDEADRILDLGFSKCLNSIVENLP-----RERQTLLFSA 326
Query: 998 TLT 1000
T T
Sbjct: 327 TQT 329
Score = 162 (62.1 bits), Expect = 4.0e-32, Sum P(3) = 4.0e-32
Identities = 47/151 (31%), Positives = 84/151 (55%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
A++L+PTRELAIQ+ + + GKY ++GG + +++ +N +IL+ATPGRL
Sbjct: 216 AIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQEKDKINAM-NILIATPGRLL 274
Query: 322 EFIQLGH-FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
+ + + F + L KI LV+DE DR+++ G L +I++ + + RQT++ S
Sbjct: 275 QHMDETYGFDCSNL-KI--LVLDEADRILDLGFSKCLNSIVENLP-----RERQTLLFSA 326
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLT 411
+ K+I D ++ +P V+ +T
Sbjct: 327 --TQTKSIRDLARLS-LQEPEYISVYEKDIT 354
Score = 116 (45.9 bits), Expect = 5.9e-33, Sum P(3) = 5.9e-33
Identities = 32/85 (37%), Positives = 46/85 (54%)
Query: 127 TYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL 186
T T+A K E + D + ++ I + ++AL + F T IQ +P L
Sbjct: 118 TTTTATKNDKEKEKEYKID-YPSATDFKDLPISQLTLKALTESKFLKLTDIQRASLPHTL 176
Query: 187 LARKDIVGAAETGSGKTLAFGIPIL 211
R DI+GAA+TGSGKTL+F +PIL
Sbjct: 177 CGR-DILGAAKTGSGKTLSFILPIL 200
Score = 116 (45.9 bits), Expect = 5.9e-33, Sum P(3) = 5.9e-33
Identities = 32/85 (37%), Positives = 46/85 (54%)
Query: 744 TYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL 803
T T+A K E + D + ++ I + ++AL + F T IQ +P L
Sbjct: 118 TTTTATKNDKEKEKEYKID-YPSATDFKDLPISQLTLKALTESKFLKLTDIQRASLPHTL 176
Query: 804 LARKDIVGAAETGSGKTLAFGIPIL 828
R DI+GAA+TGSGKTL+F +PIL
Sbjct: 177 CGR-DILGAAKTGSGKTLSFILPIL 200
Score = 116 (45.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 37/137 (27%), Positives = 69/137 (50%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A++L+PTRELAIQ+ + + GKY ++GG + +++ +N +IL+ATPG L
Sbjct: 216 AIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQEKDKINAM-NILIATPGRL- 273
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWLEKAAK--DMXXXXXXENLIQPKANSRENALMSKA 1473
L+ +D + KI L++A + D+ ++++ R+ L S
Sbjct: 274 LQHMDETYGFDCSNLKILV------LDEADRILDLGFSKCLNSIVENLPRERQTLLFS-- 325
Query: 1474 LVSKRKELQSLLGKSVQ 1490
++ K ++ L S+Q
Sbjct: 326 -ATQTKSIRDLARLSLQ 341
Score = 70 (29.7 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 42/178 (23%), Positives = 82/178 (46%)
Query: 1157 TSEIYIH-RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLI 1215
TS+I + S + R +E L+ + PL+ KM +V DF + +L
Sbjct: 385 TSKIIVFFASCKQVRFAHETFKLLNPGTTLFPLHGKMKQWTRLEV-FEDF-CKKKAGTLF 442
Query: 1216 KKRIDLAKSIEY--LESKIKKNRPDN---WLHRSGRTARANNEGLTLVLIESDEIPLYIK 1270
I A+ +++ +E I+ + PD+ ++HR GRTAR + G ++ ++ E +
Sbjct: 443 ATDI-AARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITILLPSEKDGMVN 501
Query: 1271 MFNSLEKKVDL----PD--FPIDESVLSLIKKRIDLA----KS-IEYLESKIKKNRPD 1317
+ + K ++ P+ ID + S + ++ DL KS + YL S +++ +
Sbjct: 502 LMEKQKMKFEILEPNPEKLVSIDSKLSSFLSEKTDLKYLAQKSFVSYLRSVYRQSNKE 559
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 209 (78.6 bits), Expect = 6.1e-33, Sum P(4) = 6.1e-33
Identities = 54/142 (38%), Positives = 81/142 (57%)
Query: 257 RNKLY--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
R K Y +L+LAPTRELA+Q+ + V+ V GG +Q+R L + H+LV
Sbjct: 262 RRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLV 321
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + ++ G L + K YLV+DE DRM++ G P+++ I+++ TM R
Sbjct: 322 ATPGRLVDMMERGKIGL-DFCK--YLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RH 377
Query: 375 TMIESGHFPELKNILDRVTMTE 396
TM+ S FP+ +L R + E
Sbjct: 378 TMMFSATFPKEIQMLARDFLDE 399
Score = 207 (77.9 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 51/127 (40%), Positives = 75/127 (59%)
Query: 874 RNKLY--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
R K Y +L+LAPTRELA+Q+ + V+ V GG +Q+R L + H+LV
Sbjct: 262 RRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLV 321
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + ++ G L + K YLV+DE DRM++ G P+++ I+++ TM R
Sbjct: 322 ATPGRLVDMMERGKIGL-DFCK--YLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RH 377
Query: 992 TFVFSAT 998
T +FSAT
Sbjct: 378 TMMFSAT 384
Score = 193 (73.0 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 52/165 (31%), Positives = 83/165 (50%)
Query: 1046 KIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGR---TLVFCNSISSVKRLTQLLTMLK 1101
++G T + +T+ + + +K S+L +L G+ TLVF + L L
Sbjct: 407 RVGSTSENITQKVVWVEESDKRSFLLD-LLNATGKDSLTLVFVETKKGADSLEDFLYHEG 465
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
+ +H +QR R + L +FR + IL+AT VAARGLDI ++HVI++ +P E Y
Sbjct: 466 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 525
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDF 1205
+HR GRT R N GL + + + L E K ++P +
Sbjct: 526 VHRIGRTGRVGNLGLATSFFNERNANITKDLLDLLVEAKQEVPSW 570
Score = 192 (72.6 bits), Expect = 6.1e-33, Sum P(4) = 6.1e-33
Identities = 54/158 (34%), Positives = 82/158 (51%)
Query: 491 TLCEEIQDLLNIKSPKIVDLTE-KIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGR-- 546
T +EIQ L + + L ++G T + +T+ + + +K S+L +L G+
Sbjct: 384 TFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLD-LLNATGKDS 442
Query: 547 -TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
TLVF + L L + +H +QR R + L +FR + IL+AT VAA
Sbjct: 443 LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA 502
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
RGLDI ++HVI++ +P E Y+HR GRT R N GL
Sbjct: 503 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 540
Score = 115 (45.5 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 37/138 (26%), Positives = 64/138 (46%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+L+LAPTRELA+Q+ + V+ V GG +Q+R L + H+LVATPG L
Sbjct: 269 SLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL- 327
Query: 1416 LKRIDLAK-SIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
+ ++ K +++ + + + D L+ + ++ + PK R + S
Sbjct: 328 VDMMERGKIGLDFCKYLVL-DEADRMLDMGFEPQIRRIVEQDTMPPKG-VRHTMMFSATF 385
Query: 1475 VSKRKELQSLLGKSVQSY 1492
KE+Q L + Y
Sbjct: 386 P---KEIQMLARDFLDEY 400
Score = 91 (37.1 bits), Expect = 6.1e-33, Sum P(4) = 6.1e-33
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
T NN ++ V+ E I+ + + PT +Q +P + ++D++ A+TG
Sbjct: 171 TGNNCPPHIESFSDVEMG--EIIMGNIELTRYTRPTPVQKHAIP-IIKEKRDLMACAQTG 227
Query: 200 SGKTLAFGIPILTGI 214
SGKT AF +PIL+ I
Sbjct: 228 SGKTAAFLLPILSQI 242
Score = 91 (37.1 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
T NN ++ V+ E I+ + + PT +Q +P + ++D++ A+TG
Sbjct: 171 TGNNCPPHIESFSDVEMG--EIIMGNIELTRYTRPTPVQKHAIP-IIKEKRDLMACAQTG 227
Query: 817 SGKTLAFGIPILTGI 831
SGKT AF +PIL+ I
Sbjct: 228 SGKTAAFLLPILSQI 242
Score = 52 (23.4 bits), Expect = 6.1e-33, Sum P(4) = 6.1e-33
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDF 1284
+ ++HR GRT R N GL + + + L E K ++P +
Sbjct: 523 EEYVHRIGRTGRVGNLGLATSFFNERNANITKDLLDLLVEAKQEVPSW 570
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 222 (83.2 bits), Expect = 6.1e-33, Sum P(3) = 6.1e-33
Identities = 55/166 (33%), Positives = 83/166 (50%)
Query: 1046 KIGIT-KTLTESKILCKHDEKDSYLYYFILQHP--GRTLVFCNSISSVKRLTQLLTMLKC 1102
++G T + +T+ + + EK SYL + P G TL+F + LT L
Sbjct: 396 RVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNF 455
Query: 1103 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162
+H QR+R + L+ FR SI++AT VA+RGLDIP + HVI+Y +P + Y+
Sbjct: 456 PATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYV 515
Query: 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDFPI 1207
HR GRT RA N G + + + ++ L E + P F I
Sbjct: 516 HRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLI 561
Score = 220 (82.5 bits), Expect = 2.1e-32, Sum P(3) = 2.1e-32
Identities = 51/136 (37%), Positives = 73/136 (53%)
Query: 513 KIGIT-KTLTESKILCKHDEKDSYLYYFILQHP--GRTLVFCNSISSVKRLTQLLTMLKC 569
++G T + +T+ + + EK SYL + P G TL+F + LT L
Sbjct: 396 RVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNF 455
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+H QR+R + L+ FR SI++AT VA+RGLDIP + HVI+Y +P + Y+
Sbjct: 456 PATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYV 515
Query: 630 HRSGRTARANNEGLTV 645
HR GRT RA N G V
Sbjct: 516 HRIGRTGRAGNTGQAV 531
Score = 191 (72.3 bits), Expect = 6.1e-33, Sum P(3) = 6.1e-33
Identities = 46/119 (38%), Positives = 67/119 (56%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LILAPTREL Q+ + V+ V GG Q+R +++ +L ATPGRL +
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVD 318
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
I G L I +LV+DE DRM++ G P++++I++ MT + RQT +FSAT
Sbjct: 319 LIDRGRISLAN---IKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEE-RQTLMFSAT 373
Score = 188 (71.2 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 47/129 (36%), Positives = 70/129 (54%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LILAPTREL Q+ + V+ V GG Q+R +++ +L ATPGRL +
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVD 318
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
I G L I +LV+DE DRM++ G P++++I++ MT + RQT++ S F
Sbjct: 319 LIDRGRISLAN---IKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEE-RQTLMFSATF 374
Query: 383 PELKNILDR 391
P +L R
Sbjct: 375 PRDIQLLAR 383
Score = 85 (35.0 bits), Expect = 6.1e-33, Sum P(3) = 6.1e-33
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+++ + G+ PT +Q +P R D++ A+TGSGKT F PIL+
Sbjct: 180 LLQNIKLSGYTQPTPVQKNSIPIVTSGR-DLMACAQTGSGKTAGFLFPILS 229
Score = 85 (35.0 bits), Expect = 6.1e-33, Sum P(3) = 6.1e-33
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+++ + G+ PT +Q +P R D++ A+TGSGKT F PIL+
Sbjct: 180 LLQNIKLSGYTQPTPVQKNSIPIVTSGR-DLMACAQTGSGKTAGFLFPILS 229
Score = 66 (28.3 bits), Expect = 5.0e-20, Sum P(3) = 5.0e-20
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M++ G P++++I++ MT + RQT +FSAT
Sbjct: 341 MLDMGFEPQIRHIVEGADMTSVEE-RQTLMFSAT 373
Score = 61 (26.5 bits), Expect = 3.9e-16, Sum P(3) = 3.9e-16
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDFPI 1286
D+++HR GRT RA N G + + + ++ L E + P F I
Sbjct: 512 DDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLI 561
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 237 (88.5 bits), Expect = 6.3e-33, Sum P(3) = 6.3e-33
Identities = 76/269 (28%), Positives = 132/269 (49%)
Query: 1027 KRLQDLLNI---KSPKIVDLTE-KIGITKT-LTESKILCKHDEKDSYLYYFILQHPGRTL 1081
++++DL I K P V + + K T L + ++C +++ L+ F+ ++ + L
Sbjct: 395 RKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 454
Query: 1082 -VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVAARG
Sbjct: 455 MVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARG 514
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTLVLIESDEIPL--YIKMFNSLE 1197
LDIP ++ ++ Y P + YIHR GRTAR N G L+++ +E+ Y+K +
Sbjct: 515 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLK-----Q 569
Query: 1198 KKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWL-----HRSGRTARANN 1252
KV L +F S +S I+ +++ Y K + +++ H + NN
Sbjct: 570 SKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNN 629
Query: 1253 EGLTLVLIESD-EIPLYIKM-FNSLEKKV 1279
L V + ++P ++ + NS + KV
Sbjct: 630 LNLPQVALSFGFKVPPFVDLNVNSNDGKV 658
Score = 215 (80.7 bits), Expect = 4.6e-29, Sum P(3) = 4.6e-29
Identities = 55/170 (32%), Positives = 91/170 (53%)
Query: 491 TLCEEIQDLLNI---KSPKIVDLTE-KIGITKT-LTESKILCKHDEKDSYLYYFILQHPG 545
T +++DL I K P V + + K T L + ++C +++ L+ F+ ++
Sbjct: 392 TQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRK 451
Query: 546 RTL-VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+ L VF +S SVK +LL + L +H Q +R +F + ++ ILL TDVA
Sbjct: 452 KKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVA 511
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA-NNEGLTVVLIESDEI 653
ARGLDIP ++ ++ Y P + YIHR GRTAR N G ++++ +E+
Sbjct: 512 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 561
Score = 153 (58.9 bits), Expect = 6.3e-33, Sum P(3) = 6.3e-33
Identities = 49/130 (37%), Positives = 70/130 (53%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
RN LIL+PTRELA+Q + + + ++GG + + + L +I+VAT
Sbjct: 275 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVAT 334
Query: 934 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 990
PGRL L H T +YK + LVIDE DR+++ G ELK I+ ++ T R
Sbjct: 335 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII-KLLPTR----R 384
Query: 991 QTFVFSATLT 1000
QT +FSAT T
Sbjct: 385 QTMLFSATQT 394
Score = 139 (54.0 bits), Expect = 1.8e-31, Sum P(3) = 1.8e-31
Identities = 48/147 (32%), Positives = 75/147 (51%)
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
RN LIL+PTRELA+Q + + + ++GG + + + L +I+VAT
Sbjct: 275 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVAT 334
Query: 317 PGRLWEFIQLGHFHLTE--LYK-INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
PGRL L H T +YK + LVIDE DR+++ G ELK I+ ++ T R
Sbjct: 335 PGRL-----LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII-KLLPTR----R 384
Query: 374 QTMIESGHFPELKNILDRVTMTETSQP 400
QTM+ S + + + D ++ +P
Sbjct: 385 QTMLFSA--TQTRKVEDLARISLKKEP 409
Score = 109 (43.4 bits), Expect = 6.3e-33, Sum P(3) = 6.3e-33
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 158 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E +RA+ + GF T+IQ + P LL +D++ AA+TGSGKTLAF IP + IV
Sbjct: 212 VNENTLRAIKEMGFTNMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPAVELIV 268
Score = 109 (43.4 bits), Expect = 6.3e-33, Sum P(3) = 6.3e-33
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 775 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E +RA+ + GF T+IQ + P LL +D++ AA+TGSGKTLAF IP + IV
Sbjct: 212 VNENTLRAIKEMGFTNMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPAVELIV 268
Score = 43 (20.2 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411
+++ G ELK I+ ++ T RQT +FSAT T
Sbjct: 364 ILDVGFEEELKQII-KLLPTR----RQTMLFSATQT 394
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 213 (80.0 bits), Expect = 6.4e-33, Sum P(4) = 6.4e-33
Identities = 51/153 (33%), Positives = 88/153 (57%)
Query: 506 KIVDLTEKIGIT-KTLTESKI--LCKH-DEKDSY-LYYFILQHPG--RTLVFCNSISSVK 558
+ +++ EK+ +T + +T ++ + H K+ + L +L+ G RT++F N+ +
Sbjct: 201 EFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLLRKEGMERTMIFVNTKREAE 260
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618
L + L + + QR+RLK L+ F+ I++ATDVA+RGL I G+ HVI+
Sbjct: 261 FLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPIMIATDVASRGLHIDGVSHVIN 320
Query: 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651
Y +P+ +E Y+HR GRTARA EG + + + D
Sbjct: 321 YDLPQDAEDYVHRIGRTARAGAEGKAISMADED 353
Score = 212 (79.7 bits), Expect = 8.4e-33, Sum P(4) = 8.4e-33
Identities = 51/153 (33%), Positives = 88/153 (57%)
Query: 1039 KIVDLTEKIGIT-KTLTESKI--LCKH-DEKDSY-LYYFILQHPG--RTLVFCNSISSVK 1091
+ +++ EK+ +T + +T ++ + H K+ + L +L+ G RT++F N+ +
Sbjct: 201 EFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLLRKEGMERTMIFVNTKREAE 260
Query: 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151
L + L + + QR+RLK L+ F+ I++ATDVA+RGL I G+ HVI+
Sbjct: 261 FLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPIMIATDVASRGLHIDGVSHVIN 320
Query: 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
Y +P+ +E Y+HR GRTARA EG + + + D
Sbjct: 321 YDLPQDAEDYVHRIGRTARAGAEGKAISMADED 353
Score = 187 (70.9 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 65/248 (26%), Positives = 109/248 (43%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
A+ILAPTREL +Q++ G + + + GG+ KQ L + ++V TPGRL
Sbjct: 77 AIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALKEGADVVVGTPGRLI 136
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
++++ + L E I LVIDE DRM + G +L+ IL R+ + RQ +FSAT
Sbjct: 137 DYLKQKVYSLKE---IEMLVIDEADRMFDMGFIADLRFILRRLPPYDK---RQNLMFSAT 190
Query: 999 LTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLL-----NIKSPKIVDLTEKIGITKTL 1053
L + +R++ +L K P ++ L K G+ +T+
Sbjct: 191 LNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLLRKEGMERTM 250
Query: 1054 TESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQ 1113
I + +L + + V + KRL ++L K LP+ + +
Sbjct: 251 ----IFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRL-KILEDFKSGKLPIMIATDV 305
Query: 1114 RQRLKNLD 1121
R ++D
Sbjct: 306 ASRGLHID 313
Score = 166 (63.5 bits), Expect = 6.4e-33, Sum P(4) = 6.4e-33
Identities = 45/141 (31%), Positives = 73/141 (51%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
A+ILAPTREL +Q++ G + + + GG+ KQ L + ++V TPGRL
Sbjct: 77 AIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALKEGADVVVGTPGRLI 136
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP-------RQ 374
++++ + L E I LVIDE DRM + G +L+ IL R+ + Q Q
Sbjct: 137 DYLKQKVYSLKE---IEMLVIDEADRMFDMGFIADLRFILRRLPPYDKRQNLMFSATLNQ 193
Query: 375 TMIESGHFPELKNILDRVTMT 395
++E + E N+ ++V +T
Sbjct: 194 RVMELAY--EFMNVPEKVAVT 212
Score = 113 (44.8 bits), Expect = 6.4e-33, Sum P(4) = 6.4e-33
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ N+PE +++ + GF T IQ +P +L KD+ G A+TG+GKT AF I +
Sbjct: 2 KFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSL-GGKDVAGQAQTGTGKTAAFLISLF 60
Query: 212 TGIV 215
T ++
Sbjct: 61 TKLL 64
Score = 113 (44.8 bits), Expect = 7.5e-20, Sum P(3) = 7.5e-20
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ N+PE +++ + GF T IQ +P +L KD+ G A+TG+GKT AF I +
Sbjct: 2 KFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSL-GGKDVAGQAQTGTGKTAAFLISLF 60
Query: 829 TGIV 832
T ++
Sbjct: 61 TKLL 64
Score = 107 (42.7 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 36/132 (27%), Positives = 61/132 (46%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A+ILAPTREL +Q++ G + + + GG+ KQ L + ++V TPG L
Sbjct: 77 AIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALKEGADVVVGTPGRL- 135
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWL--EKAAK--DMXXXXXXENLIQ--PKANSRENAL 1469
I+YL+ K+ + L ++A + DM +++ P + R+N +
Sbjct: 136 ---------IDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYDKRQNLM 186
Query: 1470 MSKALVSKRKEL 1481
S L + EL
Sbjct: 187 FSATLNQRVMEL 198
Score = 62 (26.9 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESD 1263
++++HR GRTARA EG + + + D
Sbjct: 328 EDYVHRIGRTARAGAEGKAISMADED 353
Score = 37 (18.1 bits), Expect = 6.4e-33, Sum P(4) = 6.4e-33
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 1413 ALSLKRIDLAKSIEYLESKIKKNRPDNWLE 1442
A+S+ D A +E + IK P W E
Sbjct: 346 AISMADEDGAFHLEAIHEYIKDKIPVEWAE 375
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 208 (78.3 bits), Expect = 7.7e-33, Sum P(3) = 7.7e-33
Identities = 57/191 (29%), Positives = 98/191 (51%)
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
T+ + I ++K + L + I QH + L+F ++ ++ L Q L+ S H
Sbjct: 227 TIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGD 286
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
Q R + LD F++ S+L+ATD+AARG+DI + VI++ +PR+ Y+HR GR+ R
Sbjct: 287 KAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGR 346
Query: 1171 ANNEGLTLVLIESDEIPLY--IKMFNSLEK-KVDLPDFPIDESV-LSLIKKRIDLAKSIE 1226
A GL + LI +E + I+ N ++ + +P F + + L ++ + AK E
Sbjct: 347 AGEAGLAVTLISHEEYHHFGVIEKKNKIKLVREQIPGFEANAEIPLEVLAQEKPQAKP-E 405
Query: 1227 YLESKIKKNRP 1237
K +K P
Sbjct: 406 GTGKKKRKQLP 416
Score = 207 (77.9 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 47/135 (34%), Positives = 75/135 (55%)
Query: 519 TLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
T+ + I ++K + L + I QH + L+F ++ ++ L Q L+ S H
Sbjct: 227 TIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGD 286
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
Q R + LD F++ S+L+ATD+AARG+DI + VI++ +PR+ Y+HR GR+ R
Sbjct: 287 KAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGR 346
Query: 638 ANNEGLTVVLIESDE 652
A GL V LI +E
Sbjct: 347 AGEAGLAVTLISHEE 361
Score = 169 (64.5 bits), Expect = 7.7e-33, Sum P(3) = 7.7e-33
Identities = 45/132 (34%), Positives = 70/132 (53%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILD-AGKYT-PVKVACVVGGMSTEKQLRILNKCPHI 312
K+ + L+L PTRELA QV + L A + +K+ GG+S Q++ L +
Sbjct: 79 KSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
LVATPGRL + + LT+ ++ V+DE DRM+ G EL+ +L + +
Sbjct: 139 LVATPGRLLDLLASNALKLTQ---VSAFVLDEADRMLSLGFTEELEQVLAALP-----RQ 190
Query: 373 RQTMIESGHFPE 384
+QT++ S FPE
Sbjct: 191 KQTLLFSATFPE 202
Score = 168 (64.2 bits), Expect = 9.8e-33, Sum P(3) = 9.8e-33
Identities = 45/129 (34%), Positives = 69/129 (53%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILD-AGKYT-PVKVACVVGGMSTEKQLRILNKCPHI 929
K+ + L+L PTRELA QV + L A + +K+ GG+S Q++ L +
Sbjct: 79 KSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
LVATPGRL + + LT+ ++ V+DE DRM+ G EL+ +L + +
Sbjct: 139 LVATPGRLLDLLASNALKLTQ---VSAFVLDEADRMLSLGFTEELEQVLAALP-----RQ 190
Query: 990 RQTFVFSAT 998
+QT +FSAT
Sbjct: 191 KQTLLFSAT 199
Score = 110 (43.8 bits), Expect = 7.7e-33, Sum P(3) = 7.7e-33
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+A + + I + L + G+ +PT +Q+ +P A+L+ +D++ A TGSGKT AF +P
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIP-AVLSGRDVLAGANTGSGKTAAFALP 66
Query: 210 IL 211
+L
Sbjct: 67 LL 68
Score = 110 (43.8 bits), Expect = 9.8e-33, Sum P(3) = 9.8e-33
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+A + + I + L + G+ +PT +Q+ +P A+L+ +D++ A TGSGKT AF +P
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIP-AVLSGRDVLAGANTGSGKTAAFALP 66
Query: 827 IL 828
+L
Sbjct: 67 LL 68
Score = 100 (40.3 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 1357 LILAPTRELAIQVQNHILD-AGKYT-PVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA QV + L A + +K+ GG+S Q++ L +LVATPG L
Sbjct: 87 LVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRL 146
Score = 71 (30.1 bits), Expect = 3.0e-18, Sum P(3) = 3.0e-18
Identities = 26/102 (25%), Positives = 49/102 (48%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLY--IKMFNSLE 1276
ID+ K + + ++ P +++HR GR+ RA GL + LI +E + I+ N ++
Sbjct: 317 IDIDKLPVVINFDLPRS-PADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIK 375
Query: 1277 K-KVDLPDFPIDESV-LSLIKKRIDLAKSIEYLESKIKKNRP 1316
+ +P F + + L ++ + AK E K +K P
Sbjct: 376 LVREQIPGFEANAEIPLEVLAQEKPQAKP-EGTGKKKRKQLP 416
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 208 (78.3 bits), Expect = 7.7e-33, Sum P(3) = 7.7e-33
Identities = 57/191 (29%), Positives = 98/191 (51%)
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
T+ + I ++K + L + I QH + L+F ++ ++ L Q L+ S H
Sbjct: 227 TIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGD 286
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
Q R + LD F++ S+L+ATD+AARG+DI + VI++ +PR+ Y+HR GR+ R
Sbjct: 287 KAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGR 346
Query: 1171 ANNEGLTLVLIESDEIPLY--IKMFNSLEK-KVDLPDFPIDESV-LSLIKKRIDLAKSIE 1226
A GL + LI +E + I+ N ++ + +P F + + L ++ + AK E
Sbjct: 347 AGEAGLAVTLISHEEYHHFGVIEKKNKIKLVREQIPGFEANAEIPLEVLAQEKPQAKP-E 405
Query: 1227 YLESKIKKNRP 1237
K +K P
Sbjct: 406 GTGKKKRKQLP 416
Score = 207 (77.9 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 47/135 (34%), Positives = 75/135 (55%)
Query: 519 TLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
T+ + I ++K + L + I QH + L+F ++ ++ L Q L+ S H
Sbjct: 227 TIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGD 286
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
Q R + LD F++ S+L+ATD+AARG+DI + VI++ +PR+ Y+HR GR+ R
Sbjct: 287 KAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGR 346
Query: 638 ANNEGLTVVLIESDE 652
A GL V LI +E
Sbjct: 347 AGEAGLAVTLISHEE 361
Score = 169 (64.5 bits), Expect = 7.7e-33, Sum P(3) = 7.7e-33
Identities = 45/132 (34%), Positives = 70/132 (53%)
Query: 255 KTRNKLYALILAPTRELAIQVQNHILD-AGKYT-PVKVACVVGGMSTEKQLRILNKCPHI 312
K+ + L+L PTRELA QV + L A + +K+ GG+S Q++ L +
Sbjct: 79 KSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138
Query: 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 372
LVATPGRL + + LT+ ++ V+DE DRM+ G EL+ +L + +
Sbjct: 139 LVATPGRLLDLLASNALKLTQ---VSAFVLDEADRMLSLGFTEELEQVLAALP-----RQ 190
Query: 373 RQTMIESGHFPE 384
+QT++ S FPE
Sbjct: 191 KQTLLFSATFPE 202
Score = 168 (64.2 bits), Expect = 9.8e-33, Sum P(3) = 9.8e-33
Identities = 45/129 (34%), Positives = 69/129 (53%)
Query: 872 KTRNKLYALILAPTRELAIQVQNHILD-AGKYT-PVKVACVVGGMSTEKQLRILNKCPHI 929
K+ + L+L PTRELA QV + L A + +K+ GG+S Q++ L +
Sbjct: 79 KSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138
Query: 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP 989
LVATPGRL + + LT+ ++ V+DE DRM+ G EL+ +L + +
Sbjct: 139 LVATPGRLLDLLASNALKLTQ---VSAFVLDEADRMLSLGFTEELEQVLAALP-----RQ 190
Query: 990 RQTFVFSAT 998
+QT +FSAT
Sbjct: 191 KQTLLFSAT 199
Score = 110 (43.8 bits), Expect = 7.7e-33, Sum P(3) = 7.7e-33
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+A + + I + L + G+ +PT +Q+ +P A+L+ +D++ A TGSGKT AF +P
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIP-AVLSGRDVLAGANTGSGKTAAFALP 66
Query: 210 IL 211
+L
Sbjct: 67 LL 68
Score = 110 (43.8 bits), Expect = 9.8e-33, Sum P(3) = 9.8e-33
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+A + + I + L + G+ +PT +Q+ +P A+L+ +D++ A TGSGKT AF +P
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIP-AVLSGRDVLAGANTGSGKTAAFALP 66
Query: 827 IL 828
+L
Sbjct: 67 LL 68
Score = 100 (40.3 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 1357 LILAPTRELAIQVQNHILD-AGKYT-PVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+L PTRELA QV + L A + +K+ GG+S Q++ L +LVATPG L
Sbjct: 87 LVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRL 146
Score = 71 (30.1 bits), Expect = 3.0e-18, Sum P(3) = 3.0e-18
Identities = 26/102 (25%), Positives = 49/102 (48%)
Query: 1219 IDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLY--IKMFNSLE 1276
ID+ K + + ++ P +++HR GR+ RA GL + LI +E + I+ N ++
Sbjct: 317 IDIDKLPVVINFDLPRS-PADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIK 375
Query: 1277 K-KVDLPDFPIDESV-LSLIKKRIDLAKSIEYLESKIKKNRP 1316
+ +P F + + L ++ + AK E K +K P
Sbjct: 376 LVREQIPGFEANAEIPLEVLAQEKPQAKP-EGTGKKKRKQLP 416
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 188 (71.2 bits), Expect = 8.0e-33, Sum P(3) = 8.0e-33
Identities = 56/179 (31%), Positives = 93/179 (51%)
Query: 1035 IKSP-KIVDLTEKIGITKTLTES-KILCKHDEKDSYLYYFILQH--PG----RTLVFCNS 1086
+K P KI ++++ ++ +T+ +IL K+ L + +H G + L+F
Sbjct: 367 LKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLY 426
Query: 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 1146
R+ L K + + +H M+Q RL+ L+ F+ +L+ATDVAARGLDIP +
Sbjct: 427 KKEAARVEGTLAR-KYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKV 485
Query: 1147 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPD 1204
+ VI+ P T E Y+HR GRT RAN +G + + ++ N L + K D+P+
Sbjct: 486 QLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPE 544
Score = 181 (68.8 bits), Expect = 8.0e-33, Sum P(3) = 8.0e-33
Identities = 42/119 (35%), Positives = 66/119 (55%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+++PTRELAIQ ++ + T +K V GG +Q R K +++ TPGRL +
Sbjct: 240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAA-KNASVIIGTPGRLLD 298
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
I G ++ + YLV+DE DRM+++G +++NI+ + RQT FSAT
Sbjct: 299 LINDGSIDCSQ---VGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSAT 354
Score = 180 (68.4 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 51/152 (33%), Positives = 82/152 (53%)
Query: 502 IKSP-KIVDLTEKIGITKTLTES-KILCKHDEKDSYLYYFILQH--PG----RTLVFCNS 553
+K P KI ++++ ++ +T+ +IL K+ L + +H G + L+F
Sbjct: 367 LKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLY 426
Query: 554 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613
R+ L K + + +H M+Q RL+ L+ F+ +L+ATDVAARGLDIP +
Sbjct: 427 KKEAARVEGTLAR-KYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKV 485
Query: 614 EHVIHYHVPRTSEIYIHRSGRTARANNEGLTV 645
+ VI+ P T E Y+HR GRT RAN +G +
Sbjct: 486 QLVINVTFPLTIEDYVHRIGRTGRANTKGTAI 517
Score = 177 (67.4 bits), Expect = 2.1e-32, Sum P(3) = 2.1e-32
Identities = 41/122 (33%), Positives = 67/122 (54%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+++PTRELAIQ ++ + T +K V GG +Q R K +++ TPGRL +
Sbjct: 240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAA-KNASVIIGTPGRLLD 298
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
I G ++ + YLV+DE DRM+++G +++NI+ + RQT+ S +
Sbjct: 299 LINDGSIDCSQ---VGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATW 355
Query: 383 PE 384
PE
Sbjct: 356 PE 357
Score = 128 (50.1 bits), Expect = 8.0e-33, Sum P(3) = 8.0e-33
Identities = 27/43 (62%), Positives = 32/43 (74%)
Query: 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
K +K PT IQ+ P LLA +D+VG AETGSGKT+AFGIP L
Sbjct: 183 KNYKEPTPIQAATWPY-LLAGRDVVGIAETGSGKTVAFGIPAL 224
Score = 128 (50.1 bits), Expect = 8.0e-33, Sum P(3) = 8.0e-33
Identities = 27/43 (62%), Positives = 32/43 (74%)
Query: 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
K +K PT IQ+ P LLA +D+VG AETGSGKT+AFGIP L
Sbjct: 183 KNYKEPTPIQAATWPY-LLAGRDVVGIAETGSGKTVAFGIPAL 224
Score = 88 (36.0 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
L+++PTRELAIQ ++ + T +K V GG +Q R K +++ TPG L
Sbjct: 240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAA-KNASVIIGTPGRL 296
Score = 65 (27.9 bits), Expect = 4.5e-20, Sum P(3) = 4.5e-20
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-KVDLPD 1283
++++HR GRT RAN +G + + ++ N L + K D+P+
Sbjct: 498 EDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPE 544
Score = 52 (23.4 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
M+++G +++NI+ + RQT FSAT
Sbjct: 321 MLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSAT 354
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 209 (78.6 bits), Expect = 8.2e-33, Sum P(3) = 8.2e-33
Identities = 46/119 (38%), Positives = 76/119 (63%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
L+L+PTRELA Q+Q L GK + + AC+ GG QL+ + + I+VATPGRL +
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+++ L++++YLV+DE DRM++ G P+++ I++ V T+ RQT +++AT
Sbjct: 365 ILEMKRI---SLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVP-TK----RQTLMYTAT 415
Score = 206 (77.6 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 47/127 (37%), Positives = 80/127 (62%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+L+PTRELA Q+Q L GK + + AC+ GG QL+ + + I+VATPGRL +
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHF 382
+++ L++++YLV+DE DRM++ G P+++ I++ V T+ RQT++ + +
Sbjct: 365 ILEMKRI---SLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVP-TK----RQTLMYTATW 416
Query: 383 P-ELKNI 388
P E++ I
Sbjct: 417 PKEVRKI 423
Score = 188 (71.2 bits), Expect = 8.2e-33, Sum P(3) = 8.2e-33
Identities = 50/147 (34%), Positives = 78/147 (53%)
Query: 1032 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPG-RTLVFCNSISS 1089
L+N I ++ E + K++T++ + EK S L + Q PG + ++FC++
Sbjct: 428 LVNPAQVNIGNVDELVA-NKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRM 486
Query: 1090 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 1149
+L + LT +H +Q +R L++FR +L+ATDVAARGLD+ I V
Sbjct: 487 CDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVV 545
Query: 1150 IHYHVPRTSEIYIHRSGRTARANNEGL 1176
++Y P E Y+HR GRT RA GL
Sbjct: 546 VNYDFPNGVEDYVHRIGRTGRAGATGL 572
Score = 188 (71.2 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 50/147 (34%), Positives = 78/147 (53%)
Query: 499 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPG-RTLVFCNSISS 556
L+N I ++ E + K++T++ + EK S L + Q PG + ++FC++
Sbjct: 428 LVNPAQVNIGNVDELVA-NKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRM 486
Query: 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616
+L + LT +H +Q +R L++FR +L+ATDVAARGLD+ I V
Sbjct: 487 CDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVV 545
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGL 643
++Y P E Y+HR GRT RA GL
Sbjct: 546 VNYDFPNGVEDYVHRIGRTGRAGATGL 572
Score = 131 (51.2 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS- 1415
L+L+PTRELA Q+Q L GK + + AC+ GG QL+ + + I+VATPG L+
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364
Query: 1416 ---LKRIDLAKSIEYL 1428
+KRI L + + YL
Sbjct: 365 ILEMKRISLHQ-VSYL 379
Score = 103 (41.3 bits), Expect = 8.2e-33, Sum P(3) = 8.2e-33
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 164 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
R +Y GF P+ IQ+ P A+ R DIV A+TGSGKTL + IP
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNR-DIVAIAKTGSGKTLGYLIP 286
Score = 103 (41.3 bits), Expect = 8.2e-33, Sum P(3) = 8.2e-33
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 781 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
R +Y GF P+ IQ+ P A+ R DIV A+TGSGKTL + IP
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNR-DIVAIAKTGSGKTLGYLIP 286
Score = 51 (23.0 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1235 NRPDNWLHRSGRTARANNEGL 1255
N ++++HR GRT RA GL
Sbjct: 552 NGVEDYVHRIGRTGRAGATGL 572
Score = 45 (20.9 bits), Expect = 8.7e-16, Sum P(3) = 8.7e-16
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 356 ELKNI-LDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409
E+K I L +V+ + + M++ G P+++ I++ V T+ RQT +++AT
Sbjct: 367 EMKRISLHQVSYLVLDEADR-MLDMGFEPQIRKIVNEVP-TK----RQTLMYTAT 415
>SGD|S000002651 [details] [associations]
symbol:PRP28 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0000354 "cis
assembly of pre-catalytic spliceosome" evidence=TAS] [GO:0005682
"U5 snRNP" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002651 GO:GO:0005524
GO:GO:0005737 EMBL:BK006938 GO:GO:0005681 GO:GO:0005682
GO:GO:0003676 EMBL:Z49701 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
RefSeq:NP_010529.3 GeneID:851830 KEGG:sce:YDR243C KO:K12858
HOGENOM:HOG000268796 OrthoDB:EOG4KPXK0 EMBL:X56934 PIR:A39624
RefSeq:NP_878065.3 ProteinModelPortal:P23394 SMR:P23394
DIP:DIP-6324N IntAct:P23394 MINT:MINT-599541 STRING:P23394
PaxDb:P23394 PeptideAtlas:P23394 EnsemblFungi:YDR243C
GeneID:1466436 KEGG:sce:YDR246W-A CYGD:YDR243c OMA:HEMNERD
NextBio:969715 Genevestigator:P23394 GermOnline:YDR243C
Uniprot:P23394
Length = 588
Score = 191 (72.3 bits), Expect = 8.4e-33, Sum P(3) = 8.4e-33
Identities = 42/120 (35%), Positives = 68/120 (56%)
Query: 1107 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166
LH S +Q QR +L FR I++AT+VAARGLDIP + V+++ + + + YIHR G
Sbjct: 467 LHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIG 526
Query: 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLS-LIKKRIDLAKSI 1225
RT RA NEG + + + E I+ +K D P++ ++ S +K + ++ K +
Sbjct: 527 RTGRAANEGTAVSFVSAAEDESLIRELYKYVRKHD----PLNSNIFSEAVKNKYNVGKQL 582
Score = 187 (70.9 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 59/221 (26%), Positives = 109/221 (49%)
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
+K+++ L+ ++ K++DL + +T LT+ I L + P + E+I
Sbjct: 332 MKQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATMTP---VIEKI 388
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY--LYYFILQHPGRTLVFCNSI 554
++ P + + G ++ L + + +++D + L + ++ ++F N
Sbjct: 389 AAGY-MQKPVYATIGVETG-SEPLIQQVVEYADNDEDKFKKLKPIVAKYDPPIIIFINYK 446
Query: 555 SSVKRLTQLL---TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 611
+ L + T +K + L H S +Q QR +L FR I++AT+VAARGLDIP
Sbjct: 447 QTADWLAEKFQKETNMKVTIL--HGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIP 504
Query: 612 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
+ V+++ + + + YIHR GRT RA NEG V + + E
Sbjct: 505 NVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSAAE 545
Score = 182 (69.1 bits), Expect = 8.4e-33, Sum P(3) = 8.4e-33
Identities = 51/129 (39%), Positives = 75/129 (58%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTP------VKVACVVGGMSTEKQLRILNKCPHILVA 932
ALILAPTREL Q+Q K KV +VGG S E+ L++ ILVA
Sbjct: 257 ALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVA 316
Query: 933 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT-ETSQPRQ 991
TPGRL + ++ HL + ++ LV+DE D+MI+ G ++ NIL +V + +++ RQ
Sbjct: 317 TPGRLIDSLEN---HLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQ 373
Query: 992 TFVFSATLT 1000
T +F+AT+T
Sbjct: 374 TLMFTATMT 382
Score = 161 (61.7 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
Identities = 47/123 (38%), Positives = 70/123 (56%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTP------VKVACVVGGMSTEKQLRILNKCPHILVA 315
ALILAPTREL Q+Q K KV +VGG S E+ L++ ILVA
Sbjct: 257 ALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVA 316
Query: 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT-ETSQPRQ 374
TPGRL + ++ HL + ++ LV+DE D+MI+ G ++ NIL +V + +++ RQ
Sbjct: 317 TPGRLIDSLEN---HLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQ 373
Query: 375 TMI 377
T++
Sbjct: 374 TLM 376
Score = 124 (48.7 bits), Expect = 8.4e-33, Sum P(3) = 8.4e-33
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 150 MAEWVKFNI-PETIIRALYQK-GFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLA 205
+ W + NI P ++R + Q+ F +PT IQ + +P+ + +D +G A TGSGKTLA
Sbjct: 171 LRNWEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLA 230
Query: 206 FGIPIL 211
F IPIL
Sbjct: 231 FVIPIL 236
Score = 124 (48.7 bits), Expect = 8.4e-33, Sum P(3) = 8.4e-33
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 767 MAEWVKFNI-PETIIRALYQK-GFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLA 822
+ W + NI P ++R + Q+ F +PT IQ + +P+ + +D +G A TGSGKTLA
Sbjct: 171 LRNWEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLA 230
Query: 823 FGIPIL 828
F IPIL
Sbjct: 231 FVIPIL 236
Score = 92 (37.4 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 34/82 (41%), Positives = 43/82 (52%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP------VKVACVVGGMSTEKQLRILNKCPHILVA 1409
ALILAPTREL Q+Q K KV +VGG S E+ L++ ILVA
Sbjct: 257 ALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVA 316
Query: 1410 TPGAL--SLKR-IDLAKSIEYL 1428
TPG L SL+ + + K +E L
Sbjct: 317 TPGRLIDSLENHLLVMKQVETL 338
Score = 81 (33.6 bits), Expect = 2.2e-21, Sum P(3) = 2.2e-21
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 1231 KIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESV 1290
+I K + D+++HR GRT RA NEG + + + E I+ +K D P++ ++
Sbjct: 513 QISK-KMDDYIHRIGRTGRAANEGTAVSFVSAAEDESLIRELYKYVRKHD----PLNSNI 567
Query: 1291 LS-LIKKRIDLAKSI 1304
S +K + ++ K +
Sbjct: 568 FSEAVKNKYNVGKQL 582
Score = 66 (28.3 bits), Expect = 8.1e-21, Sum P(3) = 8.1e-21
Identities = 20/75 (26%), Positives = 42/75 (56%)
Query: 340 LVIDETDRMIES--GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT-E 396
+++ R+I+S H +K + + + + E + MI+ G ++ NIL +V + +
Sbjct: 313 ILVATPGRLIDSLENHLLVMKQV-ETLVLDEADK----MIDLGFEDQVTNILTKVDINAD 367
Query: 397 TSQPRQTFVFSATLT 411
++ RQT +F+AT+T
Sbjct: 368 SAVNRQTLMFTATMT 382
Score = 37 (18.1 bits), Expect = 7.7e-18, Sum P(3) = 7.7e-18
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 1058
+K+++ L+ ++ K++DL + +T LT+ I
Sbjct: 332 MKQVETLVLDEADKMIDLGFEDQVTNILTKVDI 364
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 190 (71.9 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 49/122 (40%), Positives = 68/122 (55%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LIL PTRELA QV + + T K V+GG + Q + L K PH +VATPGR+ +
Sbjct: 77 LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRIAD 136
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
++ + L L L++DE DRM++ G P+LK I + + RQT +FSATL
Sbjct: 137 HLEQKNLFLNGL---ELLILDEADRMLDLGFAPQLKAINEAAD----HKRRQTLMFSATL 189
Query: 1000 TH 1001
H
Sbjct: 190 DH 191
Score = 176 (67.0 bits), Expect = 1.4e-31, Sum P(4) = 1.4e-31
Identities = 50/193 (25%), Positives = 91/193 (47%)
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
+G L H + + ++ L H + EI L +K+P V +
Sbjct: 162 LGFAPQLKAINEAADHKRRQTLMFSATLDH---SEINEIAAAL-LKNPLHVAIGTAHAEH 217
Query: 518 KTLTESKILCKH-DEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+ +++ LC H D K++ L + + ++F + + +RL L+ + L
Sbjct: 218 QDISQRIYLCDHLDHKEALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALS 277
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
+ Q R + +D+F IL+ TDVA+RGLD+ + VI++ +P+ +E Y+HR GRT
Sbjct: 278 GELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRT 337
Query: 636 ARANNEGLTVVLI 648
RA +G + L+
Sbjct: 338 GRAGAKGDAISLV 350
Score = 170 (64.9 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 45/170 (26%), Positives = 85/170 (50%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGR-TLVFCNSISSVKR 1092
+K+P V + + +++ LC H D K++ L + + ++F + + +R
Sbjct: 202 LKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSRLLSDESHKQVIIFTATRADTER 261
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152
L L+ + L + Q R + +D+F IL+ TDVA+RGLD+ + VI++
Sbjct: 262 LAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINF 321
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
+P+ +E Y+HR GRT RA +G + L+ + + K+ L K ++
Sbjct: 322 DMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFLRKTFEI 371
Score = 164 (62.8 bits), Expect = 1.4e-31, Sum P(4) = 1.4e-31
Identities = 40/98 (40%), Positives = 56/98 (57%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LIL PTRELA QV + + T K V+GG + Q + L K PH +VATPGR+ +
Sbjct: 77 LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRIAD 136
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 360
++ + L L L++DE DRM++ G P+LK I
Sbjct: 137 HLEQKNLFLNGL---ELLILDEADRMLDLGFAPQLKAI 171
Score = 130 (50.8 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ F++ + ++++L G TPT IQ +P AL A KD++ +++TGSGKTLAF +P L
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIAL-AGKDLMASSKTGSGKTLAFLLPAL 60
Query: 829 TGIVN 833
+++
Sbjct: 61 QRVIS 65
Score = 130 (50.8 bits), Expect = 1.4e-31, Sum P(4) = 1.4e-31
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ F++ + ++++L G TPT IQ +P AL A KD++ +++TGSGKTLAF +P L
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIAL-AGKDLMASSKTGSGKTLAFLLPAL 60
Query: 212 TGIVN 216
+++
Sbjct: 61 QRVIS 65
Score = 108 (43.1 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
LIL PTRELA QV + + T K V+GG + Q + L K PH +VATPG ++
Sbjct: 77 LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRIA 135
Score = 56 (24.8 bits), Expect = 9.8e-19, Sum P(3) = 9.8e-19
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412
M++ G P+LK I + + RQT +FSATL H
Sbjct: 159 MLDLGFAPQLKAINEAAD----HKRRQTLMFSATLDH 191
Score = 52 (23.4 bits), Expect = 1.4e-31, Sum P(4) = 1.4e-31
Identities = 20/88 (22%), Positives = 42/88 (47%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+ ++HR GRT RA +G + L+ + + K+ L K ++ E+ + +K +
Sbjct: 328 EEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFLRKTFEISVIKGLEAKFTGLKDK 387
Query: 1298 IDLAKSIEYLESKIK-KNRPDNWLEKAA 1324
+ +++ K K++P + KAA
Sbjct: 388 PKSVATKGVVKANTKGKSKPKPNVVKAA 415
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 190 (71.9 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 49/122 (40%), Positives = 68/122 (55%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LIL PTRELA QV + + T K V+GG + Q + L K PH +VATPGR+ +
Sbjct: 77 LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRIAD 136
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
++ + L L L++DE DRM++ G P+LK I + + RQT +FSATL
Sbjct: 137 HLEQKNLFLNGL---ELLILDEADRMLDLGFAPQLKAINEAAD----HKRRQTLMFSATL 189
Query: 1000 TH 1001
H
Sbjct: 190 DH 191
Score = 176 (67.0 bits), Expect = 1.4e-31, Sum P(4) = 1.4e-31
Identities = 50/193 (25%), Positives = 91/193 (47%)
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
+G L H + + ++ L H + EI L +K+P V +
Sbjct: 162 LGFAPQLKAINEAADHKRRQTLMFSATLDH---SEINEIAAAL-LKNPLHVAIGTAHAEH 217
Query: 518 KTLTESKILCKH-DEKDSYLYYFILQHPGR-TLVFCNSISSVKRLTQLLTMLKCSPLPLH 575
+ +++ LC H D K++ L + + ++F + + +RL L+ + L
Sbjct: 218 QDISQRIYLCDHLDHKEALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALS 277
Query: 576 ASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
+ Q R + +D+F IL+ TDVA+RGLD+ + VI++ +P+ +E Y+HR GRT
Sbjct: 278 GELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRT 337
Query: 636 ARANNEGLTVVLI 648
RA +G + L+
Sbjct: 338 GRAGAKGDAISLV 350
Score = 170 (64.9 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 45/170 (26%), Positives = 85/170 (50%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGR-TLVFCNSISSVKR 1092
+K+P V + + +++ LC H D K++ L + + ++F + + +R
Sbjct: 202 LKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSRLLSDESHKQVIIFTATRADTER 261
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152
L L+ + L + Q R + +D+F IL+ TDVA+RGLD+ + VI++
Sbjct: 262 LAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINF 321
Query: 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202
+P+ +E Y+HR GRT RA +G + L+ + + K+ L K ++
Sbjct: 322 DMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFLRKTFEI 371
Score = 164 (62.8 bits), Expect = 1.4e-31, Sum P(4) = 1.4e-31
Identities = 40/98 (40%), Positives = 56/98 (57%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
LIL PTRELA QV + + T K V+GG + Q + L K PH +VATPGR+ +
Sbjct: 77 LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRIAD 136
Query: 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 360
++ + L L L++DE DRM++ G P+LK I
Sbjct: 137 HLEQKNLFLNGL---ELLILDEADRMLDLGFAPQLKAI 171
Score = 130 (50.8 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ F++ + ++++L G TPT IQ +P AL A KD++ +++TGSGKTLAF +P L
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIAL-AGKDLMASSKTGSGKTLAFLLPAL 60
Query: 829 TGIVN 833
+++
Sbjct: 61 QRVIS 65
Score = 130 (50.8 bits), Expect = 1.4e-31, Sum P(4) = 1.4e-31
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ F++ + ++++L G TPT IQ +P AL A KD++ +++TGSGKTLAF +P L
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIAL-AGKDLMASSKTGSGKTLAFLLPAL 60
Query: 212 TGIVN 216
+++
Sbjct: 61 QRVIS 65
Score = 108 (43.1 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
LIL PTRELA QV + + T K V+GG + Q + L K PH +VATPG ++
Sbjct: 77 LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRIA 135
Score = 56 (24.8 bits), Expect = 9.8e-19, Sum P(3) = 9.8e-19
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 376 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412
M++ G P+LK I + + RQT +FSATL H
Sbjct: 159 MLDLGFAPQLKAINEAAD----HKRRQTLMFSATLDH 191
Score = 52 (23.4 bits), Expect = 1.4e-31, Sum P(4) = 1.4e-31
Identities = 20/88 (22%), Positives = 42/88 (47%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1297
+ ++HR GRT RA +G + L+ + + K+ L K ++ E+ + +K +
Sbjct: 328 EEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFLRKTFEISVIKGLEAKFTGLKDK 387
Query: 1298 IDLAKSIEYLESKIK-KNRPDNWLEKAA 1324
+ +++ K K++P + KAA
Sbjct: 388 PKSVATKGVVKANTKGKSKPKPNVVKAA 415
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 209 (78.6 bits), Expect = 9.1e-33, Sum P(3) = 9.1e-33
Identities = 54/142 (38%), Positives = 81/142 (57%)
Query: 257 RNKLY--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 314
R K Y +L+LAPTRELA+Q+ + V+ V GG +Q+R L + H+LV
Sbjct: 261 RRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLV 320
Query: 315 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 374
ATPGRL + ++ G L + K YLV+DE DRM++ G P+++ I+++ TM R
Sbjct: 321 ATPGRLVDMMERGKIGL-DFCK--YLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RH 376
Query: 375 TMIESGHFPELKNILDRVTMTE 396
TM+ S FP+ +L R + E
Sbjct: 377 TMMFSATFPKEIQMLARDFLDE 398
Score = 207 (77.9 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 51/127 (40%), Positives = 75/127 (59%)
Query: 874 RNKLY--ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931
R K Y +L+LAPTRELA+Q+ + V+ V GG +Q+R L + H+LV
Sbjct: 261 RRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLV 320
Query: 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQ 991
ATPGRL + ++ G L + K YLV+DE DRM++ G P+++ I+++ TM R
Sbjct: 321 ATPGRLVDMMERGKIGL-DFCK--YLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RH 376
Query: 992 TFVFSAT 998
T +FSAT
Sbjct: 377 TMMFSAT 383
Score = 198 (74.8 bits), Expect = 9.1e-33, Sum P(3) = 9.1e-33
Identities = 53/165 (32%), Positives = 84/165 (50%)
Query: 1046 KIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGR---TLVFCNSISSVKRLTQLLTMLK 1101
++G T + +T+ + + +K S+L +L G+ TLVF + L L
Sbjct: 406 RVGSTSENITQKVVWVEESDKRSFLLD-LLNATGKDSLTLVFVETKKGADSLEDFLYHEG 464
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
+ +H +QR R + L +FR + IL+AT VAARGLDI ++HVI++ +P E Y
Sbjct: 465 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 524
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDF 1205
+HR GRT R N GL I + + + L E K ++P +
Sbjct: 525 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSW 569
Score = 193 (73.0 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 57/173 (32%), Positives = 86/173 (49%)
Query: 491 TLCEEIQDLLNIKSPKIVDLTE-KIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGR-- 546
T +EIQ L + + L ++G T + +T+ + + +K S+L +L G+
Sbjct: 383 TFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLD-LLNATGKDS 441
Query: 547 -TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
TLVF + L L + +H +QR R + L +FR + IL+AT VAA
Sbjct: 442 LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA 501
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK 658
RGLDI ++HVI++ +P E Y+HR GRT R N GL I + TK
Sbjct: 502 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI-TK 553
Score = 115 (45.5 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 37/138 (26%), Positives = 64/138 (46%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+L+LAPTRELA+Q+ + V+ V GG +Q+R L + H+LVATPG L
Sbjct: 268 SLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL- 326
Query: 1416 LKRIDLAK-SIEYLESKIKKNRPDNWLEKAAKDMXXXXXXENLIQPKANSRENALMSKAL 1474
+ ++ K +++ + + + D L+ + ++ + PK R + S
Sbjct: 327 VDMMERGKIGLDFCKYLVL-DEADRMLDMGFEPQIRRIVEQDTMPPKG-VRHTMMFSATF 384
Query: 1475 VSKRKELQSLLGKSVQSY 1492
KE+Q L + Y
Sbjct: 385 P---KEIQMLARDFLDEY 399
Score = 91 (37.1 bits), Expect = 9.1e-33, Sum P(3) = 9.1e-33
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 199
T NN ++ V+ E I+ + + PT +Q +P + ++D++ A+TG
Sbjct: 170 TGNNCPPHIESFSDVEMG--EIIMGNIELTRYTRPTPVQKHAIP-IIKEKRDLMACAQTG 226
Query: 200 SGKTLAFGIPILTGI 214
SGKT AF +PIL+ I
Sbjct: 227 SGKTAAFLLPILSQI 241
Score = 91 (37.1 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 757 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETG 816
T NN ++ V+ E I+ + + PT +Q +P + ++D++ A+TG
Sbjct: 170 TGNNCPPHIESFSDVEMG--EIIMGNIELTRYTRPTPVQKHAIP-IIKEKRDLMACAQTG 226
Query: 817 SGKTLAFGIPILTGI 831
SGKT AF +PIL+ I
Sbjct: 227 SGKTAAFLLPILSQI 241
Score = 57 (25.1 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 1238 DNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL-EKKVDLPDF 1284
+ ++HR GRT R N GL I + + + L E K ++P +
Sbjct: 522 EEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSW 569
WARNING: HSPs involving 627 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1493 1285 0.00082 124 3 11 22 0.41 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 877
No. of states in DFA: 619 (66 KB)
Total size of DFA: 472 KB (2213 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:06
No. of threads or processors used: 24
Search cpu time: 102.75u 0.11s 102.86t Elapsed: 00:01:19
Total cpu time: 102.94u 0.12s 103.06t Elapsed: 00:01:31
Start: Thu Aug 15 13:13:51 2013 End: Thu Aug 15 13:15:22 2013
WARNINGS ISSUED: 2