RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16310
(1493 letters)
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase,
DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET:
ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A*
3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 303 bits (778), Expect = 4e-90
Identities = 109/547 (19%), Positives = 213/547 (38%), Gaps = 92/547 (16%)
Query: 709 SANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMA 768
+ + N + ++ +S+ + ++ ++ ED ++
Sbjct: 10 DQRNFGRNQRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKEDNSKEVT 69
Query: 769 EWVKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLAR-KDIVGAAETGSGKTLAFG 824
+ + I +A+ + F T +Q + L + D++ A+TG+GKT AF
Sbjct: 70 LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFL 129
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPI ++N + + + A+I+AP
Sbjct: 130 IPIFQHLINTKFDS-----------------------------------QYMVKAVIVAP 154
Query: 885 TRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKC-PHILVATPGRLWE 939
TR+LA+Q++ + +VGG + +NK P+I++ATPGRL +
Sbjct: 155 TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLID 214
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV--TMTETSQPRQTFVFSA 997
++ ++Y V+DE DR++E G +L+ I + ++++ +T +FSA
Sbjct: 215 VLEKYSNKFFR--FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSA 272
Query: 998 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL-LNIKSPKIVDLTEKIGITKTLTES 1056
TL +++L + +N K +D +K +
Sbjct: 273 TLD-----------------------DKVQKLANNIMNKKECLFLDTVDK---NEPEAHE 306
Query: 1057 KI-----LCKHDEKDSY-LYYFILQH------PGRTLVFCNSISSVKRLTQLLTMLKCSP 1104
+I + + + I + + ++F ++ L +L
Sbjct: 307 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKD 366
Query: 1105 LP---LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
LP H + Q +R + RF+ + IL+ TDV ARG+D P + V+ VP Y
Sbjct: 367 LPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANY 426
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPL--YIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1219
IHR GRTAR+ EG +++ I DE+P ++ ++ P +E +++
Sbjct: 427 IHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVT 486
Query: 1220 DLAKSIE 1226
+ + I
Sbjct: 487 EEPEDIS 493
Score = 279 bits (716), Expect = 8e-82
Identities = 121/696 (17%), Positives = 233/696 (33%), Gaps = 166/696 (23%)
Query: 80 KQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVD 139
N + N + + + S + + + T + + +
Sbjct: 3 LYNDGNRDQRNFGRNQRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKE 62
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR-KDIVGAAET 198
++ E + E + + + I +A+ + F T +Q + L + D++ A+T
Sbjct: 63 DNSKEVTLDSLLE--EGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKT 120
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
G+GKT AF IPI ++N + +
Sbjct: 121 GTGKTFAFLIPIFQHLINTKFDS-----------------------------------QY 145
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKC-PHIL 313
+ A+I+APTR+LA+Q++ + +VGG + +NK P+I+
Sbjct: 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIV 205
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
+ATPGRL + ++ ++Y V+DE DR++E G +L+ I +
Sbjct: 206 IATPGRLIDVLEKYSNKFFR--FVDYKVLDEADRLLEIGFRDDLETISGIL-------NE 256
Query: 374 QTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
+ ++++ +T +FSATL
Sbjct: 257 KN-------------------SKSADNIKTLLFSATLD---------------------- 275
Query: 434 DPSIKRLQDL-LNIKSPKIVDLTEKIGITKTLTESKI-----LCKHDEKDSY-LYYFILQ 486
+++L + +N K +D +K + +I + + + I +
Sbjct: 276 -DKVQKLANNIMNKKECLFLDTVDK---NEPEAHERIDQSVVISEKFANSIFAAVEHIKK 331
Query: 487 HPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 546
+ S +
Sbjct: 332 Q-----------IKERDSNY---------------------------------------K 341
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLP---LHASMNQRQRLKNLDRFRDQNNSILLATDV 603
++F ++ L +L LP H + Q +R + RF+ + IL+ TDV
Sbjct: 342 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 401
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP----LKTKF 659
ARG+D P + V+ VP YIHR GRTAR+ EG +V+ I DE+P L+
Sbjct: 402 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461
Query: 660 NLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQV 719
N+ + + E E E E + + + + + E + ++
Sbjct: 462 NIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEI 521
Query: 720 NK-----TEEIQSDEPHSKKLKQKKKKKQTYTSANK 750
+ Q P S++ K ++
Sbjct: 522 ASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAM 557
Score = 75.2 bits (185), Expect = 8e-14
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 1341 QLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQ 1396
Q LI + +Y A+I+APTR+LA+Q++ + +VGG
Sbjct: 134 QHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA 193
Query: 1397 LRILNKC-PHILVATPGAL----SLKRIDLAKSIEYL 1428
+ +NK P+I++ATPG L + ++Y
Sbjct: 194 MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYK 230
Score = 39.8 bits (93), Expect = 0.006
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPL--YIKMFNSLEKKVDLPDFPIDES---VL 1291
N++HR GRTAR+ EG +++ I DE+P ++ ++ P +E VL
Sbjct: 423 LANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVL 482
Query: 1292 SLIKKRIDLAKS-----IEYLESKIKKNR--PDNWLEKAAKDMDIIIDDENLIQPNQLLI 1344
+ + + I S IK+ R L + A ++++D L P
Sbjct: 483 EAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRF 542
Query: 1345 FESRNLR 1351
+ L
Sbjct: 543 LDKLGLS 549
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 295 bits (758), Expect = 3e-87
Identities = 108/505 (21%), Positives = 205/505 (40%), Gaps = 89/505 (17%)
Query: 748 ANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR- 806
+ +L+ V +N + + + + I +A+ + F T +Q + L +
Sbjct: 1 GSSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSED 60
Query: 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866
D++ A+TG+GKT AF IPI ++N +
Sbjct: 61 HDVIARAKTGTGKTFAFLIPIFQHLINTKFDS---------------------------- 92
Query: 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRI 922
+ + A+I+APTR+LA+Q++ + +VGG +
Sbjct: 93 -------QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNK 145
Query: 923 LNKC-PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 981
+NK P+I++ATPGRL + ++ ++Y V+DE DR++E G +L+ I +
Sbjct: 146 MNKLRPNIVIATPGRLIDVLEKYSNKFFR--FVDYKVLDEADRLLEIGFRDDLETISGIL 203
Query: 982 --TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL-QDLLNIKSP 1038
++++ +T +FSATL +++L +++N K
Sbjct: 204 NEKNSKSADNIKTLLFSATLD-----------------------DKVQKLANNIMNKKEC 240
Query: 1039 KIVDLTEKIGITKTLTESKI-----LCKHDEKDSY-LYYFILQH------PGRTLVFCNS 1086
+D +K + +I + + + I + + ++F +
Sbjct: 241 LFLDTVDK---NEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPT 297
Query: 1087 ISSVKRLTQLLTMLKCSPLP---LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
+ L +L LP H + Q +R + RF+ + IL+ TDV ARG+D
Sbjct: 298 VKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF 357
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL--YIKMFNSLEKKVD 1201
P + V+ VP YIHR GRTAR+ EG +++ I DE+P ++ ++
Sbjct: 358 PNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 417
Query: 1202 LPDFPIDESVLSLIKKRIDLAKSIE 1226
P +E +++ + + I
Sbjct: 418 EKYEPSEEIKSEVLEAVTEEPEDIS 442
Score = 272 bits (696), Expect = 5e-79
Identities = 115/634 (18%), Positives = 222/634 (35%), Gaps = 163/634 (25%)
Query: 131 ANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR- 189
+ +L+ V +N + + + + I +A+ + F T +Q + L +
Sbjct: 1 GSSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSED 60
Query: 190 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249
D++ A+TG+GKT AF IPI ++N +
Sbjct: 61 HDVIARAKTGTGKTFAFLIPIFQHLINTKFDS---------------------------- 92
Query: 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRI 305
+ + A+I+APTR+LA+Q++ + +VGG +
Sbjct: 93 -------QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNK 145
Query: 306 LNKC-PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364
+NK P+I++ATPGRL + ++ ++Y V+DE DR++E G +L+ I +
Sbjct: 146 MNKLRPNIVIATPGRLIDVLEKYSNKFFR--FVDYKVLDEADRLLEIGFRDDLETISGIL 203
Query: 365 TMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 424
E + +++ +T +FSATL
Sbjct: 204 ------------------NEKNS--------KSADNIKTLLFSATLD------------- 224
Query: 425 SKSKKVSKGDPSIKRL-QDLLNIKSPKIVDLTEKIGITKTLTESKI-----LCKHDEKDS 478
+++L +++N K +D +K + +I + +
Sbjct: 225 ----------DKVQKLANNIMNKKECLFLDTVDK---NEPEAHERIDQSVVISEKFANSI 271
Query: 479 Y-LYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 537
+ I + + S
Sbjct: 272 FAAVEHIKKQ-----------IKERDSNY------------------------------- 289
Query: 538 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP---LHASMNQRQRLKNLDRFRDQN 594
+ ++F ++ L +L LP H + Q +R + RF+
Sbjct: 290 --------KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 341
Query: 595 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
+ IL+ TDV ARG+D P + V+ VP YIHR GRTAR+ EG +V+ I DE+P
Sbjct: 342 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELP 401
Query: 655 L------KTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSEL 708
+ ++E E E +++ + + + + + + E
Sbjct: 402 FVRELEDAKNIVIAKQEKYEPSEEIKSEVLEA--VTEEPEDISDIVISLISSYRSCIKEY 459
Query: 709 SANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKK 742
+ ++ T + ++P K ++
Sbjct: 460 RFSERRILPEIASTYGVLLNDPQLKIPVSRRFLD 493
Score = 75.2 bits (185), Expect = 8e-14
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 1341 QLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQ 1396
Q LI + +Y A+I+APTR+LA+Q++ + +VGG
Sbjct: 83 QHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA 142
Query: 1397 LRILNKC-PHILVATPGAL----SLKRIDLAKSIEYL 1428
+ +NK P+I++ATPG L + ++Y
Sbjct: 143 MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYK 179
Score = 40.6 bits (95), Expect = 0.005
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 10/103 (9%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK--KVDLPDFPIDESVLSLI 1294
N++HR GRTAR+ EG +++ I DE + LE + + E +
Sbjct: 372 LANYIHRIGRTARSGKEGSSVLFICKDE----LPFVRELEDAKNIVIAKQEKYEPSEEIK 427
Query: 1295 KKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLI 1337
+ ++ + + + + + E I
Sbjct: 428 SEVLEAVTEEP----EDISDIVISLISSYRSCIKEYRFSERRI 466
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 280 bits (719), Expect = 1e-84
Identities = 117/426 (27%), Positives = 188/426 (44%), Gaps = 81/426 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
N+ + I+ A+ KGF+ PT IQ V+P L +IV A TGSGKT +F IP++ +
Sbjct: 11 LNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV- 69
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+EN N + A+IL PTRELAIQV
Sbjct: 70 ---------NEN------------------------------NGIEAIILTPTRELAIQV 90
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ I +K+A + GG + Q++ L K +I+V TPGR+ + I G +L
Sbjct: 91 ADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGTLNLK--- 146
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ Y ++DE D M+ G +++ IL+ ++ ++ +FSAT+
Sbjct: 147 NVKYFILDEADEMLNMGFIKDVEKILN-----ACNKDKRILLFSATMP------------ 189
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
I L + + K I + +S + +E+ L
Sbjct: 190 -----------REILNLAKKY-MGDYSFI----KAKINANIEQSYVEVNENERFEALCRL 233
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
+ LVFC + K L +L + +H ++Q QR K + F+ + IL+
Sbjct: 234 LKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILI 293
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDV +RG+D+ + VI+YH+P+ E Y+HR GRT RA +G + +I E K
Sbjct: 294 ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRRE----YKK 349
Query: 1193 FNSLEK 1198
+E+
Sbjct: 350 LRYIER 355
Score = 158 bits (402), Expect = 3e-42
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 49/221 (22%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
N+ + I+ A+ KGF+ PT IQ V+P L +IV A TGSGKT +F IP++ +
Sbjct: 11 LNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV- 69
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+EN N + A+IL PTRELAIQV
Sbjct: 70 ---------NEN------------------------------NGIEAIILTPTRELAIQV 90
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ I +K+A + GG + Q++ L K +I+V TPGR+ + I G +L
Sbjct: 91 ADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGTLNLK--- 146
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
+ Y ++DE D M+ G +++ IL+ ++ ++ +
Sbjct: 147 NVKYFILDEADEMLNMGFIKDVEKILN-----ACNKDKRIL 182
Score = 131 bits (333), Expect = 4e-33
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 12/183 (6%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
T+ EI +L + + K I + +S + +E+ L + L
Sbjct: 187 TMPREILNLAKKYMGDYSFI----KAKINANIEQSYVEVNENERFEALCRLLKNKEFYGL 242
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608
VFC + K L +L + +H ++Q QR K + F+ + IL+ATDV +RG+
Sbjct: 243 VFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL------KTKFNLQ 662
D+ + VI+YH+P+ E Y+HR GRT RA +G + +I E K ++
Sbjct: 303 DVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362
Query: 663 EEE 665
+ +
Sbjct: 363 KLK 365
Score = 76.8 bits (190), Expect = 9e-15
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
A+IL PTRELAIQV + I +K+A + GG + Q++ L K +I+V TPG
Sbjct: 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPG 132
Score = 36.0 bits (84), Expect = 0.097
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1277
P++++HR GRT RA +G + +I E K +E+
Sbjct: 319 PESYMHRIGRTGRAGKKGKAISIINRRE----YKKLRYIER 355
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 278 bits (713), Expect = 4e-83
Identities = 121/420 (28%), Positives = 181/420 (43%), Gaps = 72/420 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ + E I+ + + PT +Q +P R D++ A+TGSGKT AF +PIL
Sbjct: 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPIL 74
Query: 829 TGIVN--KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
+ I + E EN + +L+LAPTR
Sbjct: 75 SQIYSDGPGEALRAMKENGRYGRRKQYP-----------------------ISLVLAPTR 111
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA+Q+ + V+ V GG +Q+R L + H+LVATPGRL + ++ G
Sbjct: 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK- 170
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT-------L 999
L YLV+DE DRM++ G P+++ I+++ TM R T +FSAT L
Sbjct: 171 --IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RHTMMFSATFPKEIQML 227
Query: 1000 THS-LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 1058
L + L G +V +I Q + +
Sbjct: 228 ARDFLDEYIFLAVG-----RVGSTSENIT--QKV-------------------------V 255
Query: 1059 LCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
+ +K S+L + TLVF + L L + +H +QR R
Sbjct: 256 WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 315
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
+ L +FR + IL+AT VAARGLDI ++HVI++ +P E Y+HR GRT R N GL
Sbjct: 316 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 375
Score = 176 bits (449), Expect = 6e-48
Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 30/235 (12%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ + E I+ + + PT +Q +P R D++ A+TGSGKT AF +PIL
Sbjct: 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPIL 74
Query: 212 TGIVN--KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
+ I + E EN + +L+LAPTR
Sbjct: 75 SQIYSDGPGEALRAMKENGRYGRRKQYP-----------------------ISLVLAPTR 111
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA+Q+ + V+ V GG +Q+R L + H+LVATPGRL + ++ G
Sbjct: 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK- 170
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
L YLV+DE DRM++ G P+++ I+++ TM R TM+ S FP+
Sbjct: 171 --IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RHTMMFSATFPK 222
Score = 121 bits (306), Expect = 3e-29
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 525 ILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+ + +K S+L + TLVF + L L + +H +QR
Sbjct: 255 VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 314
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
R + L +FR + IL+AT VAARGLDI ++HVI++ +P E Y+HR GRT R N G
Sbjct: 315 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 374
Query: 643 L 643
L
Sbjct: 375 L 375
Score = 76.8 bits (190), Expect = 1e-14
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
+L+LAPTRELA+Q+ + V+ V GG +Q+R L + H+LVATPG L
Sbjct: 104 SLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV 163
Query: 1415 ---SLKRIDLAKSIEYL 1428
+I L +YL
Sbjct: 164 DMMERGKIGL-DFCKYL 179
Score = 30.6 bits (70), Expect = 4.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1238 DNWLHRSGRTARANNEGL 1255
+ ++HR GRT R N GL
Sbjct: 358 EEYVHRIGRTGRVGNLGL 375
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 275 bits (705), Expect = 9e-82
Identities = 110/416 (26%), Positives = 177/416 (42%), Gaps = 81/416 (19%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ ++ + II + + G+K PT IQ +P + + +D++ A+TGSGKT AF +PIL
Sbjct: 57 HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIP-VISSGRDLMACAQTGSGKTAAFLLPIL 115
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
+ + + E E +I++PTREL
Sbjct: 116 SKL------------LEDPHELELGRP----------------------QVVIVSPTREL 141
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
AIQ+ N + +K+ V GG S Q + + H+++ATPGRL +F+
Sbjct: 142 AIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF--- 198
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT-------LTH 1001
++V+DE DRM++ G +++ I+ VTM QT +FSAT +
Sbjct: 199 ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP---EHQTLMFSATFPEEIQRMAG 255
Query: 1002 S-LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 1060
LKN + + G IV + ++
Sbjct: 256 EFLKNYVFVAIG---------------------------IVGGA-----CSDVKQTIYEV 283
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K S L + + T+VF + L L+ + +H Q QR + L
Sbjct: 284 NKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQAL 343
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
F++ + +L+AT VA+RGLDI I+HVI+Y +P + Y+HR GRT R N G
Sbjct: 344 RDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGR 399
Score = 167 bits (426), Expect = 8e-45
Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ ++ + II + + G+K PT IQ +P + + +D++ A+TGSGKT AF +PIL
Sbjct: 57 HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIP-VISSGRDLMACAQTGSGKTAAFLLPIL 115
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
+ + + E E +I++PTREL
Sbjct: 116 SKL------------LEDPHELELGRP----------------------QVVIVSPTREL 141
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
AIQ+ N + +K+ V GG S Q + + H+++ATPGRL +F+
Sbjct: 142 AIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF--- 198
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
++V+DE DRM++ G +++ I+ VTM QT++ S FPE
Sbjct: 199 ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP---EHQTLMFSATFPE 248
Score = 126 bits (318), Expect = 1e-30
Identities = 39/128 (30%), Positives = 61/128 (47%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
K S L + + T+VF + L L+ + +H Q QR
Sbjct: 281 YEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQRE 340
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
+ L F++ + +L+AT VA+RGLDI I+HVI+Y +P + Y+HR GRT R N G
Sbjct: 341 QALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA 400
Query: 645 VVLIESDE 652
+ ++
Sbjct: 401 TSFFDPEK 408
Score = 75.7 bits (187), Expect = 3e-14
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+I++PTRELAIQ+ N + +K+ V GG S Q + + H+++ATPG L
Sbjct: 132 VVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRL- 190
Query: 1416 LKRIDL 1421
+D
Sbjct: 191 ---LDF 193
Score = 29.8 bits (68), Expect = 7.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1238 DNWLHRSGRTARANNEGL 1255
D+++HR GRT R N G
Sbjct: 382 DDYVHRIGRTGRVGNNGR 399
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding,
hydrolase, nucleotide-binding, RNA binding protein,
structural genomics; 1.90A {Sulfolobus tokodaii}
Length = 337
Score = 269 bits (690), Expect = 6e-81
Identities = 119/414 (28%), Positives = 183/414 (44%), Gaps = 88/414 (21%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ E I +A+ + GFK T++QS +P +L K++V A+TGSGKT A+ IPIL
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIP-LMLQGKNVVVRAKTGSGKTAAYAIPILE----- 54
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+ +L++ PTREL QV +
Sbjct: 55 ------------------------------------LGMK----SLVVTPTRELTRQVAS 74
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
HI D G+Y KVA V GGM + Q+ + + I+VATPGRL + G L+
Sbjct: 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLDLWSKGVIDLSS---F 130
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
++IDE D M E G ++K IL +TS + T +FSAT+
Sbjct: 131 EIVIIDEADLMFEMGFIDDIKIILA-----QTSNRKITGLFSATIP-------------- 171
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
I+++ I + + + + I E K + D+ S +
Sbjct: 172 ---------EEIRKVVKDF-ITNYEEI----EACIGLANVEHKFVHVKDDWRSKVQALRE 217
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
+VF + + V +L +L + + L + Q R +N+D FR+ +L+ T
Sbjct: 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITT 273
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
DVA+RGLDIP +E VI++ P+ YIHR GRT R +G + I +E L
Sbjct: 274 DVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI-LNEYWL 326
Score = 233 bits (597), Expect = 1e-68
Identities = 118/498 (23%), Positives = 183/498 (36%), Gaps = 172/498 (34%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ E I +A+ + GFK T++QS +P +L K++V A+TGSGKT A+ IPIL
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIP-LMLQGKNVVVRAKTGSGKTAAYAIPILE----- 54
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+ +L++ PTREL QV +
Sbjct: 55 ------------------------------------LGMK----SLVVTPTRELTRQVAS 74
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
HI D G+Y KVA V GGM + Q+ + + I+VATPGRL + G L+
Sbjct: 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLDLWSKGVIDLSS---F 130
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
++IDE D M E G ++K IL + +
Sbjct: 131 EIVIIDEADLMFEMGFIDDIKIILAQT-------SNR----------------------- 160
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
+ T +FSAT+ I+++ I + + + +
Sbjct: 161 ---KITGLFSATIP-----------------------EEIRKVVKDF-ITNYEEI----E 189
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
I E + ++ R+ + L K V I
Sbjct: 190 ACIGLANVEH-------------KFVHVKDDWRSKVQ----ALRENKDKGV-----IVFV 227
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+T ++ V +L +L L
Sbjct: 228 RT--------RNR--------------------------VAKLVRLFD--NAIEL--RGD 249
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+ Q R +N+D FR+ +L+ TDVA+RGLDIP +E VI++ P+ YIHR GRT R
Sbjct: 250 LPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGR 309
Query: 638 ANNEGLTVVLIESDEIPL 655
+G + I +E L
Sbjct: 310 MGRKGEAITFI-LNEYWL 326
Score = 80.6 bits (200), Expect = 3e-16
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+L++ PTREL QV +HI D G+Y KVA V GGM + Q+ + + I+VATPG
Sbjct: 59 SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPG 114
Score = 29.8 bits (68), Expect = 7.1
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPL 1267
++HR GRT R +G + I +E L
Sbjct: 297 LRTYIHRIGRTGRMGRKGEAITFI-LNEYWL 326
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 267 bits (684), Expect = 2e-79
Identities = 115/448 (25%), Positives = 186/448 (41%), Gaps = 92/448 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++ +++ GF+ P+ IQ +P A+ R DI+ A+ G+GKT AF IP L
Sbjct: 26 FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTL---- 80
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
E VK NK+ ALI+ PTRELA+Q
Sbjct: 81 -----------------------------------EKVKPKLNKIQALIMVPTRELALQT 105
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ GK+ + GG + + LN+ HILV TPGR+ + L+
Sbjct: 106 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLS--- 162
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ ++DE D+M+ ++ IL Q+ +FSAT ++
Sbjct: 163 DCSLFIMDEADKMLSRDFKTIIEQILS-----FLPPTHQSLLFSATFPLTV--------- 208
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI-----LCKHDEKDS 1067
K+ K L P +I + + LT I + +K
Sbjct: 209 ----KEFMV-----KHLHK------P------YEINLMEELTLKGITQYYAFVEERQKLH 247
Query: 1068 YLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
L + ++FCNS + V+ L + +T L S HA M Q++R K FR
Sbjct: 248 CLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG 307
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
L+ +D+ RG+DI + VI++ P+T+E Y+HR GR+ R + GL + LI ++
Sbjct: 308 KVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWND- 366
Query: 1187 PLYIKMFNSLEK--KVDLPDFP--IDES 1210
+E+ ++ P ID+S
Sbjct: 367 ---RFNLYKIEQELGTEIAAIPATIDKS 391
Score = 158 bits (403), Expect = 5e-42
Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 48/229 (20%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++ +++ GF+ P+ IQ +P A+ R DI+ A+ G+GKT AF IP L
Sbjct: 26 FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTL---- 80
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
E VK NK+ ALI+ PTRELA+Q
Sbjct: 81 -----------------------------------EKVKPKLNKIQALIMVPTRELALQT 105
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ GK+ + GG + + LN+ HILV TPGR+ + L+
Sbjct: 106 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLS--- 162
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ ++DE D+M+ ++ IL Q+++ S FP
Sbjct: 163 DCSLFIMDEADKMLSRDFKTIIEQILS-----FLPPTHQSLLFSATFPL 206
Score = 121 bits (305), Expect = 3e-29
Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 19/196 (9%)
Query: 504 SPKIVDLTEK-------IGITKTLTESKI-----LCKHDEKDSYLYYFI-LQHPGRTLVF 550
+ + K I + + LT I + +K L + ++F
Sbjct: 205 PLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIF 264
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610
CNS + V+ L + +T L S HA M Q++R K FR L+ +D+ RG+DI
Sbjct: 265 CNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDI 324
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL------KTKFNLQEE 664
+ VI++ P+T+E Y+HR GR+ R + GL + LI ++ + +
Sbjct: 325 QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAI 384
Query: 665 ENNEEEERAEADKEKT 680
++ A+ ++T
Sbjct: 385 PATIDKSLYVAENDET 400
Score = 86.9 bits (216), Expect = 6e-18
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALI+ PTRELA+Q + GK+ + GG + + LN+ HILV TPG
Sbjct: 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPG 148
Score = 33.7 bits (78), Expect = 0.42
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK--KVDLPDFP--IDES 1289
+ +LHR GR+ R + GL + LI ++ +E+ ++ P ID+S
Sbjct: 339 AETYLHRIGRSGRFGHLGLAINLINWND----RFNLYKIEQELGTEIAAIPATIDKS 391
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET: ANP;
2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 260 bits (666), Expect = 9e-77
Identities = 106/453 (23%), Positives = 194/453 (42%), Gaps = 87/453 (19%)
Query: 741 KKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMP 800
+K+ + +E +TS D+ + + E ++R +Y GF+ P+ IQ +
Sbjct: 13 RKRLLKEEDMTKVEFETSEEVDV---TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIK 69
Query: 801 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 860
++ +D++ +++G+GKT F I +L
Sbjct: 70 -QIIKGRDVIAQSQSGTGKTATFSISVL-------------------------------- 96
Query: 861 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL 920
+ + + ALILAPTRELA+Q+Q +L G Y V+ +GG + + +
Sbjct: 97 -------QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDI 149
Query: 921 RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 980
R L+ H++ TPGR+++ I+ I LV+DE D M+ G ++ ++
Sbjct: 150 RKLDYGQHVVAGTPGRVFDMIRRRSLRTRA---IKMLVLDEADEMLNKGFKEQIYDVYR- 205
Query: 981 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 1040
Q + SATL H + +++ K + D P
Sbjct: 206 ----YLPPATQVVLISATLPHEI-------------LEMTN-----KFMTD------PIR 237
Query: 1041 VDLTEKIGITKTLTESKI------LCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRL 1093
+ + LT I + + + K L + ++FCN+ V L
Sbjct: 238 ILVK-----RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 292
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
T+ + + +H M Q++R + FR + +L++TDV ARGLD+P + +I+Y
Sbjct: 293 TEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYD 352
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 353 LPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385
Score = 158 bits (402), Expect = 9e-42
Identities = 59/261 (22%), Positives = 109/261 (41%), Gaps = 51/261 (19%)
Query: 124 KKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMP 183
+K+ + +E +TS D+ + + E ++R +Y GF+ P+ IQ +
Sbjct: 13 RKRLLKEEDMTKVEFETSEEVDV---TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIK 69
Query: 184 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 243
++ +D++ +++G+GKT F I +L
Sbjct: 70 -QIIKGRDVIAQSQSGTGKTATFSISVL-------------------------------- 96
Query: 244 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL 303
+ + + ALILAPTRELA+Q+Q +L G Y V+ +GG + + +
Sbjct: 97 -------QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDI 149
Query: 304 RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 363
R L+ H++ TPGR+++ I+ I LV+DE D M+ G ++ ++
Sbjct: 150 RKLDYGQHVVAGTPGRVFDMIRRRSLRTRA---IKMLVLDEADEMLNKGFKEQIYDVYR- 205
Query: 364 VTMTETSQPRQTMIESGHFPE 384
Q ++ S P
Sbjct: 206 ----YLPPATQVVLISATLPH 222
Score = 115 bits (290), Expect = 3e-27
Identities = 36/110 (32%), Positives = 65/110 (59%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+ ++FCN+ V LT+ + + +H M Q++R + FR + +L++TDV
Sbjct: 276 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV 335
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
ARGLD+P + +I+Y +P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 336 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385
Score = 83.0 bits (206), Expect = 1e-16
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALILAPTRELA+Q+Q +L G Y V+ +GG + + +R L+ H++ TPG
Sbjct: 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPG 164
Score = 32.2 bits (74), Expect = 1.3
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEI 1265
+ ++HR GR+ R +G+ + +++D+I
Sbjct: 357 RELYIHRIGRSGRYGRKGVAINFVKNDDI 385
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 255 bits (653), Expect = 2e-75
Identities = 113/455 (24%), Positives = 200/455 (43%), Gaps = 86/455 (18%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L
Sbjct: 13 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATL---- 67
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ ++ ++ L++ TRELA Q+
Sbjct: 68 -----------------------------------QQLEPVTGQVSVLVMCHTRELAFQI 92
Query: 893 QNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NKCPHILVATPGRLWEFIQLGHFHLTE 950
KY P VKVA GG+S +K +L CPHI+V TPGR+ + +L
Sbjct: 93 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK- 151
Query: 951 LYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I + ++DE D+M+E ++ I T +Q +FSATL+ ++
Sbjct: 152 --HIKHFILDECDKMLEQLDMRRDVQEIF-----RMTPHEKQVMMFSATLSKEIR----- 199
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT-KTLTESKILCKHDEKDSY 1068
V + K +QD P + + ++ +T L + + K +EK+
Sbjct: 200 --------PVCR-----KFMQD------PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK 240
Query: 1069 LYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L+ + + + ++F S+ L QLL + +H M Q +RL +F+D
Sbjct: 241 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 300
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL--TLVLIESDE 1185
IL+AT++ RG+DI + +Y +P S+ Y+HR R R +GL T V E+D
Sbjct: 301 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND- 359
Query: 1186 IPLYIKMFNSLEK--KVDLPDFPIDESVLSLIKKR 1218
K+ N ++ +V++ + P + + S I++
Sbjct: 360 ----AKILNDVQDRFEVNISELPDEIDISSYIEQT 390
Score = 223 bits (570), Expect = 3e-64
Identities = 107/500 (21%), Positives = 185/500 (37%), Gaps = 157/500 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L
Sbjct: 13 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATL---- 67
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ ++ ++ L++ TRELA Q+
Sbjct: 68 -----------------------------------QQLEPVTGQVSVLVMCHTRELAFQI 92
Query: 276 QNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NKCPHILVATPGRLWEFIQLGHFHLTE 333
KY P VKVA GG+S +K +L CPHI+V TPGR+ + +L
Sbjct: 93 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK- 151
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
I + ++DE D+M L+++ M ++ I
Sbjct: 152 --HIKHFILDECDKM------------LEQLDMRR-------DVQE--------IF---- 178
Query: 394 MTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVD 453
T +Q +FSATL+ + + V + K +QD P +
Sbjct: 179 -RMTPHEKQVMMFSATLSKEI-------------RPVCR-----KFMQD------PMEIF 213
Query: 454 LTEKIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
+ ++ +T L + + K +EK+ R L DL +
Sbjct: 214 VDDETKLTLHGLQQYYVKLKDNEKN------------RKLF---------------DLLD 246
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
+ + + I S+ L QLL +
Sbjct: 247 VLEFNQVV----IFV------------------------KSVQRCIALAQLLVEQNFPAI 278
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
+H M Q +RL +F+D IL+AT++ RG+DI + +Y +P S+ Y+HR
Sbjct: 279 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV 338
Query: 633 GRTARANNEGLTVVLIESDE 652
R R +GL + + +
Sbjct: 339 ARAGRFGTKGLAITFVSDEN 358
Score = 79.6 bits (197), Expect = 1e-15
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NKCPHILVATPG 1412
L++ TRELA Q+ KY P VKVA GG+S +K +L CPHI+V TPG
Sbjct: 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPG 137
Score = 33.3 bits (77), Expect = 0.53
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 1237 PDNWLHRSGRTARANNEGL--TLVLIESDEIPLYIKMFNSLEK--KVDLPDFPIDESVLS 1292
D +LHR R R +GL T V E+D K+ N ++ +V++ + P + + S
Sbjct: 331 SDTYLHRVARAGRFGTKGLAITFVSDEND-----AKILNDVQDRFEVNISELPDEIDISS 385
Query: 1293 LIKKR 1297
I++
Sbjct: 386 YIEQT 390
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 253 bits (649), Expect = 8e-75
Identities = 98/446 (21%), Positives = 190/446 (42%), Gaps = 86/446 (19%)
Query: 749 NKELLEVDTSNNEDMFVQMAE-WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK 807
++ + +++ S + + ++ + + E ++R ++ GF+ P+ IQ + ++
Sbjct: 1 SEGITDIEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGH 59
Query: 808 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867
D++ A++G+GKT F I L
Sbjct: 60 DVLAQAQSGTGKTGTFSIAAL--------------------------------------- 80
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
+ + + AL+LAPTRELA+Q+Q ++ + +KV +GG S + L
Sbjct: 81 QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-A 139
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
I+V TPGR+++ IQ F KI ++DE D M+ SG ++ I
Sbjct: 140 QIVVGTPGRVFDNIQRRRFRTD---KIKMFILDEADEMLSSGFKEQIYQIFT-----LLP 191
Query: 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 1047
Q + SAT+ + + +V+ K +++ P + +
Sbjct: 192 PTTQVVLLSATMPNDVL-------------EVTT-----KFMRN------PVRILVK--- 224
Query: 1048 GITKTLTESKI------LCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTML 1100
LT I + + + K L + ++FCN+ V+ LT L
Sbjct: 225 --KDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND 282
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
K + +++ + Q++R + FR ++ IL++TD+ ARG+D+ + VI+Y +P E
Sbjct: 283 KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKEN 342
Query: 1161 YIHRSGRTARANNEGLTLVLIESDEI 1186
YIHR GR R +G+ + + ++++
Sbjct: 343 YIHRIGRGGRFGRKGVAINFVTNEDV 368
Score = 151 bits (384), Expect = 1e-39
Identities = 57/286 (19%), Positives = 108/286 (37%), Gaps = 78/286 (27%)
Query: 132 NKELLEVDTSNNEDMFVQMAE-WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK 190
++ + +++ S + + ++ + + E ++R ++ GF+ P+ IQ + ++
Sbjct: 1 SEGITDIEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGH 59
Query: 191 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250
D++ A++G+GKT F I L
Sbjct: 60 DVLAQAQSGTGKTGTFSIAAL--------------------------------------- 80
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
+ + + AL+LAPTRELA+Q+Q ++ + +KV +GG S + L
Sbjct: 81 QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-A 139
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
I+V TPGR+++ IQ F KI ++DE D M+ SG ++ I
Sbjct: 140 QIVVGTPGRVFDNIQRRRFRTD---KIKMFILDEADEMLSSGFKEQIYQIFT-------- 188
Query: 371 QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416
Q + SAT+ + +
Sbjct: 189 -------------------------LLPPTTQVVLLSATMPNDVLE 209
Score = 115 bits (291), Expect = 2e-27
Identities = 33/113 (29%), Positives = 64/113 (56%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+ ++FCN+ V+ LT L K + +++ + Q++R + FR ++ IL++
Sbjct: 256 SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 315
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
TD+ ARG+D+ + VI+Y +P E YIHR GR R +G+ + + ++++
Sbjct: 316 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 368
Score = 80.3 bits (199), Expect = 8e-16
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L I+V TPG
Sbjct: 92 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPG 147
Score = 31.7 bits (73), Expect = 2.1
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEI 1265
+N++HR GR R +G+ + + ++++
Sbjct: 340 KENYIHRIGRGGRFGRKGVAINFVTNEDV 368
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 254 bits (651), Expect = 8e-75
Identities = 101/466 (21%), Positives = 192/466 (41%), Gaps = 89/466 (19%)
Query: 729 EPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGF 788
P Q + + + ++++ NE + + N+ E+++R +Y GF
Sbjct: 5 SPEFMSASQDSRSRDNGPDGMEPEGVIESNWNE----IVDSFDDMNLSESLLRGIYAYGF 60
Query: 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848
+ P+ IQ + + D++ A++G+GKT F I IL
Sbjct: 61 EKPSAIQQRAIL-PCIKGYDVIAQAQSGTGKTATFAISIL-------------------- 99
Query: 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA 908
+ ++ AL+LAPTRELA Q+Q ++ G Y
Sbjct: 100 -------------------QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 140
Query: 909 CVVGGMSTEKQLRIL-NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 967
+GG + +++ L + PHI+V TPGR+++ + + I V+DE D M+
Sbjct: 141 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPK---YIKMFVLDEADEMLS 197
Query: 968 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 1027
G ++ +I + + Q + SAT+ + +V+K K
Sbjct: 198 RGFKDQIYDIFQ-----KLNSNTQVVLLSATMPSDVL-------------EVTK-----K 234
Query: 1028 RLQDLLNIKSPKIVDLTEKIGITKTLTESKI------LCKHDEKDSYLYYFI-LQHPGRT 1080
++D P + + + LT I + + + K L +
Sbjct: 235 FMRD------PIRILVK-----KEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQA 283
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F N+ V LT+ + + +H M+Q++R + FR ++ +L+ TD+ ARG
Sbjct: 284 VIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARG 343
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+D+ + VI+Y +P E YIHR GR R +G+ + ++ ++
Sbjct: 344 IDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDK 389
Score = 152 bits (387), Expect = 9e-40
Identities = 60/306 (19%), Positives = 112/306 (36%), Gaps = 81/306 (26%)
Query: 112 EPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGF 171
P Q + + + ++++ NE + + N+ E+++R +Y GF
Sbjct: 5 SPEFMSASQDSRSRDNGPDGMEPEGVIESNWNE----IVDSFDDMNLSESLLRGIYAYGF 60
Query: 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231
+ P+ IQ + + D++ A++G+GKT F I IL
Sbjct: 61 EKPSAIQQRAIL-PCIKGYDVIAQAQSGTGKTATFAISIL-------------------- 99
Query: 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA 291
+ ++ AL+LAPTRELA Q+Q ++ G Y
Sbjct: 100 -------------------QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 140
Query: 292 CVVGGMSTEKQLRIL-NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 350
+GG + +++ L + PHI+V TPGR+++ + + I V+DE D M+
Sbjct: 141 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPK---YIKMFVLDEADEMLS 197
Query: 351 SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
G ++ +I + + Q + SAT+
Sbjct: 198 RGFKDQIYDIFQ---------------------------------KLNSNTQVVLLSATM 224
Query: 411 THSLKN 416
+
Sbjct: 225 PSDVLE 230
Score = 115 bits (291), Expect = 2e-27
Identities = 31/110 (28%), Positives = 60/110 (54%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+ ++F N+ V LT+ + + +H M+Q++R + FR ++ +L+ TD+
Sbjct: 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 339
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
ARG+D+ + VI+Y +P E YIHR GR R +G+ + ++ ++
Sbjct: 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDK 389
Score = 79.9 bits (198), Expect = 1e-15
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL-NKCPHILVATPG 1412
AL+LAPTRELA Q+Q ++ G Y +GG + +++ L + PHI+V TPG
Sbjct: 111 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPG 168
Score = 32.2 bits (74), Expect = 1.5
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEI 1265
+N++HR GR R +G+ + ++ ++
Sbjct: 361 RENYIHRIGRGGRFGRKGVAINMVTEEDK 389
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 242 bits (621), Expect = 1e-69
Identities = 87/449 (19%), Positives = 171/449 (38%), Gaps = 108/449 (24%)
Query: 793 KIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851
KIQ +P L ++++G +++G+GKT AF + +L+ + + P
Sbjct: 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQ------------ 191
Query: 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 911
A+ LAP+RELA Q+ + + + GKYT VK A +
Sbjct: 192 ---------------------------AICLAPSRELARQIMDVVTEMGKYTEVKTAFGI 224
Query: 912 GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 971
+ I++ TPG + + ++ I V+DE D M++
Sbjct: 225 KDS----VPKGAKIDAQIVIGTPGTVMDLMKRRQLDAR---DIKVFVLDEADNMLDQQGL 277
Query: 972 PE-LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030
+ I + Q +FSAT +++
Sbjct: 278 GDQSMRIKH-----LLPRNTQIVLFSATF-----------------------SERVEKYA 309
Query: 1031 DLLNIKSPKIVDLTEKIGITKTLTESKI-----LCKHDEKDSY-----LYYFILQHPGRT 1080
+ + + L T+ L+ I C+ E+ Y LY L G++
Sbjct: 310 ERF-APNANEIRLK-----TEELSVEGIKQLYMDCQ-SEEHKYNVLVELYG--LLTIGQS 360
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++FC + + + + +T + L ++ QR +D FR + +L+ T+V ARG
Sbjct: 361 IIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARG 420
Query: 1141 LDIPGIEHVIHYHVPRT------SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
+D+ + V++Y +P + Y+HR GRT R G+++ + + + N
Sbjct: 421 IDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKS---WEEMN 477
Query: 1195 SLEK----KVDLPDFPIDESVLSLIKKRI 1219
++++ + E + ++K +
Sbjct: 478 AIQEYFQRPITRVPTDDYEELEKVVKNAL 506
Score = 133 bits (338), Expect = 9e-33
Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 53/211 (25%)
Query: 176 KIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234
KIQ +P L ++++G +++G+GKT AF + +L+ + + P
Sbjct: 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQ------------ 191
Query: 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 294
A+ LAP+RELA Q+ + + + GKYT VK A +
Sbjct: 192 ---------------------------AICLAPSRELARQIMDVVTEMGKYTEVKTAFGI 224
Query: 295 GGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 354
+ I++ TPG + + ++ I V+DE D M++
Sbjct: 225 KDS----VPKGAKIDAQIVIGTPGTVMDLMKRRQLDAR---DIKVFVLDEADNMLDQQGL 277
Query: 355 PE-LKNILDRVTMTETSQPRQTMIESGHFPE 384
+ I + Q ++ S F E
Sbjct: 278 GDQSMRIKH-----LLPRNTQIVLFSATFSE 303
Score = 115 bits (291), Expect = 7e-27
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 26/180 (14%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKI-----LCKHDEKDSY-----LYY 538
T E ++ + + L T+ L+ I C+ E+ Y LY
Sbjct: 300 TFSERVEKYAERFAPNANEIRLK-----TEELSVEGIKQLYMDCQ-SEEHKYNVLVELYG 353
Query: 539 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598
L G++++FC + + + + +T + L ++ QR +D FR + +L
Sbjct: 354 --LLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVL 411
Query: 599 LATDVAARGLDIPGIEHVIHYHVPRT------SEIYIHRSGRTARANNEGLTVVLIESDE 652
+ T+V ARG+D+ + V++Y +P + Y+HR GRT R G+++ + +
Sbjct: 412 VTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471
Score = 77.6 bits (192), Expect = 1e-14
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
A+ LAP+RELA Q+ + + + GKYT VK A + + I++ TPG
Sbjct: 192 AICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS----VPKGAKIDAQIVIGTPG 244
Score = 36.8 bits (86), Expect = 0.060
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK----KVDLPDFPIDESVLS 1292
P +LHR GRT R G+++ + + + N++++ + E +
Sbjct: 444 PQTYLHRIGRTGRFGRVGVSINFVHDKKS---WEEMNAIQEYFQRPITRVPTDDYEELEK 500
Query: 1293 LIKKRI 1298
++K +
Sbjct: 501 VVKNAL 506
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 233 bits (597), Expect = 8e-68
Identities = 94/468 (20%), Positives = 180/468 (38%), Gaps = 105/468 (22%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGI 831
+ +++ +Y F+ P+KIQ +P L ++++ +++G+GKT AF + +LT +
Sbjct: 10 LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV 69
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+ +P A+ LAP+RELA Q
Sbjct: 70 NPEDASPQ---------------------------------------AICLAPSRELARQ 90
Query: 892 VQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950
+ + GK+T + V KQ+ ++V TPG + + ++ L
Sbjct: 91 TLEVVQEMGKFTKITSQLIVPDSFEKNKQIN-----AQVIVGTPGTVLDLMRRKLMQLQ- 144
Query: 951 LYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
KI V+DE D M++ + + + Q +FSAT
Sbjct: 145 --KIKIFVLDEADNMLDQQGLGDQCIRVKR-----FLPKDTQLVLFSATF---------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI-----LCKHDE 1064
++++ + + + ++L T + I CK +E
Sbjct: 188 -------------ADAVRQYAKKI-VPNANTLELQ-----TNEVNVDAIKQLYMDCK-NE 227
Query: 1065 KDSY-----LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
D + LY L G +++F + + L L LH + ++R +
Sbjct: 228 ADKFDVLTELYG--LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 285
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS------EIYIHRSGRTARANN 1173
+D FR+ + +L+ T+V ARG+DIP + V++Y +P + YIHR GRT R
Sbjct: 286 IDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGR 345
Query: 1174 EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVL--SLIKKRI 1219
+G+ + + + +++ P D+ ++KK +
Sbjct: 346 KGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVL 393
Score = 140 bits (354), Expect = 1e-35
Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 55/232 (23%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGI 214
+ +++ +Y F+ P+KIQ +P L ++++ +++G+GKT AF + +LT +
Sbjct: 10 LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV 69
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+ +P A+ LAP+RELA Q
Sbjct: 70 NPEDASPQ---------------------------------------AICLAPSRELARQ 90
Query: 275 VQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333
+ + GK+T + V KQ+ ++V TPG + + ++ L
Sbjct: 91 TLEVVQEMGKFTKITSQLIVPDSFEKNKQIN-----AQVIVGTPGTVLDLMRRKLMQLQ- 144
Query: 334 LYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTETSQPRQTMIESGHFPE 384
KI V+DE D M++ + + + Q ++ S F +
Sbjct: 145 --KIKIFVLDEADNMLDQQGLGDQCIRVKR-----FLPKDTQLVLFSATFAD 189
Score = 104 bits (263), Expect = 6e-24
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
L G +++F + + L L LH + ++R + +D FR+ + +L+
Sbjct: 240 LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 299
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTS------EIYIHRSGRTARANNEGLTVVLIESDE 652
T+V ARG+DIP + V++Y +P + YIHR GRT R +G+ + +
Sbjct: 300 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357
Score = 68.7 bits (169), Expect = 4e-12
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPG 1412
A+ LAP+RELA Q + + GK+T + V KQ+ ++V TPG
Sbjct: 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQIN-----AQVIVGTPG 130
Score = 31.4 bits (72), Expect = 2.6
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVL--SLI 1294
P ++HR GRT R +G+ + + + +++ P D+ ++
Sbjct: 330 PATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIV 389
Query: 1295 KKRI 1298
KK +
Sbjct: 390 KKVL 393
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 232 bits (595), Expect = 1e-66
Identities = 109/527 (20%), Positives = 205/527 (38%), Gaps = 105/527 (19%)
Query: 676 DKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKL 735
++ E ++S+ K ++ + + V + +AN D EE + D L
Sbjct: 9 AVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTD------EEEKEDRAAQSLL 62
Query: 736 KQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQ 795
+ + + E+L+ D ++ + + + + +++ +Y GF P+KIQ
Sbjct: 63 NKLIRSNLVDNTNQVEVLQRDPNSPLYS---VKSFEELRLKPQLLQGVYAMGFNRPSKIQ 119
Query: 796 SMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854
+P L ++++ +++G+GKT AF + +L+ + + P
Sbjct: 120 ENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ--------------- 164
Query: 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGG 913
L L+PT ELA+Q I GK+ P +K+A V G
Sbjct: 165 ------------------------CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG 200
Query: 914 MSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIES-GHF 971
E+ +I I++ TPG + ++ L KI V+DE D MI + GH
Sbjct: 201 NKLERGQKIS---EQIVIGTPGTVLDWCSKLKFIDPK---KIKVFVLDEADVMIATQGHQ 254
Query: 972 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 1031
+ I + Q +FSAT + S+ +
Sbjct: 255 DQSIRIQR-----MLPRNCQMLLFSATF-----------------------EDSVWKFAQ 286
Query: 1032 LLNIKSPKIVDLTEKIGITKTLTESKI-----LCKHDEK--DSYLYYFILQHPGRTLVFC 1084
+ + P ++ L + T I LC ++ + + + ++FC
Sbjct: 287 KV-VPDPNVIKLK-----REEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFC 340
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
++ + L L+ L M QR ++RFR+ +L+ T+V ARG+D+
Sbjct: 341 HTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400
Query: 1145 GIEHVIHYHVPRT------SEIYIHRSGRTARANNEGLTLVLIESDE 1185
+ VI++ +P +E Y+HR GRT R GL + +++S
Sbjct: 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447
Score = 146 bits (370), Expect = 4e-37
Identities = 67/343 (19%), Positives = 128/343 (37%), Gaps = 70/343 (20%)
Query: 46 AENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKT 105
++ V+E EA E +++ +++ A +
Sbjct: 3 TDSWALAVDEQEAAAESLSNLHL-------------KEEKIKPDTNGAVVKTNANAEKTD 49
Query: 106 EEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRA 165
EE + D + L + + + E+L+ D ++ + + + + +++
Sbjct: 50 EEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYS---VKSFEELRLKPQLLQG 106
Query: 166 LYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 224
+Y GF P+KIQ +P L ++++ +++G+GKT AF + +L+ + + P
Sbjct: 107 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ-- 164
Query: 225 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK 284
L L+PT ELA+Q I GK
Sbjct: 165 -------------------------------------CLCLSPTYELALQTGKVIEQMGK 187
Query: 285 YTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVI 342
+ P +K+A V G E+ +I I++ TPG + ++ L KI V+
Sbjct: 188 FYPELKLAYAVRGNKLERGQKIS---EQIVIGTPGTVLDWCSKLKFIDPK---KIKVFVL 241
Query: 343 DETDRMIES-GHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
DE D MI + GH + I + Q ++ S F +
Sbjct: 242 DEADVMIATQGHQDQSIRIQR-----MLPRNCQMLLFSATFED 279
Score = 102 bits (257), Expect = 9e-23
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+ ++FC++ + L L+ L M QR ++RFR+ +L+
Sbjct: 330 AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 389
Query: 601 TDVAARGLDIPGIEHVIHYHVPRT------SEIYIHRSGRTARANNEGLTVVLIESDE 652
T+V ARG+D+ + VI++ +P +E Y+HR GRT R GL V +++S
Sbjct: 390 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447
Score = 70.8 bits (174), Expect = 1e-12
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
L L+PT ELA+Q I GK+ P +K+A V G E+ +I I++ TPG
Sbjct: 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS---EQIVIGTPG 219
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 226 bits (579), Expect = 4e-65
Identities = 98/454 (21%), Positives = 177/454 (38%), Gaps = 96/454 (21%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARK 807
N +EV + + + + + +++ +Y GF P+KIQ +P L +
Sbjct: 6 NTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQ 65
Query: 808 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867
+++ +++G+GKT AF + +L+ + + P
Sbjct: 66 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ---------------------------- 97
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKC 926
L L+PT ELA+Q I GK+ P +K+A V G E+ +I
Sbjct: 98 -----------CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS--- 143
Query: 927 PHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMT 984
I++ TPG + ++ L KI V+DE D MI + GH + I
Sbjct: 144 EQIVIGTPGTVLDWCSKLKFIDPK---KIKVFVLDEADVMIATQGHQDQSIRIQR----- 195
Query: 985 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 1044
+ Q +FSAT + S+ + + + P ++ L
Sbjct: 196 MLPRNCQMLLFSATF-----------------------EDSVWKFAQKV-VPDPNVIKLK 231
Query: 1045 EKIGITKTLTESKI-----LCKHDEK--DSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 1097
+ T I LC ++ + + + ++FC++ + L L
Sbjct: 232 -----REEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 286
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
+ L M QR ++RFR+ +L+ T+V ARG+D+ + VI++ +P
Sbjct: 287 SKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 346
Query: 1158 ------SEIYIHRSGRTARANNEGLTLVLIESDE 1185
+E Y+HR GRT R GL + +++S
Sbjct: 347 KDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380
Score = 136 bits (344), Expect = 3e-34
Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 54/257 (21%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARK 190
N +EV + + + + + +++ +Y GF P+KIQ +P L +
Sbjct: 6 NTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQ 65
Query: 191 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250
+++ +++G+GKT AF + +L+ + + P
Sbjct: 66 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ---------------------------- 97
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKC 309
L L+PT ELA+Q I GK+ P +K+A V G E+ +I
Sbjct: 98 -----------CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS--- 143
Query: 310 PHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMT 367
I++ TPG + ++ L KI V+DE D MI + GH + I
Sbjct: 144 EQIVIGTPGTVLDWCSKLKFIDPK---KIKVFVLDEADVMIATQGHQDQSIRIQR----- 195
Query: 368 ETSQPRQTMIESGHFPE 384
+ Q ++ S F +
Sbjct: 196 MLPRNCQMLLFSATFED 212
Score = 105 bits (264), Expect = 7e-24
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+ ++FC++ + L L+ L M QR ++RFR+ +L+
Sbjct: 263 AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 322
Query: 601 TDVAARGLDIPGIEHVIHYHVPRT------SEIYIHRSGRTARANNEGLTVVLIESDE 652
T+V ARG+D+ + VI++ +P +E Y+HR GRT R GL V +++S
Sbjct: 323 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380
Score = 71.4 bits (176), Expect = 7e-13
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
L L+PT ELA+Q I GK+ P +K+A V G E+ +I I++ TPG
Sbjct: 98 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS---EQIVIGTPG 152
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 221 bits (565), Expect = 2e-63
Identities = 76/475 (16%), Positives = 152/475 (32%), Gaps = 83/475 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+N E +K K T Q + ++ K A TG GKT + L
Sbjct: 4 WNEYEDFRSFFKKKFGKDLTGYQRLWAK-RIVQGKSFTMVAPTGVGKTTFGMMTAL---- 58
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K + + ++ PT L Q
Sbjct: 59 -----------------------------------WLARKGKK---SALVFPTVTLVKQT 80
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC----PHILVATPGRLWEFIQLGHFHL 948
+ VK+ M E++ + HILV + + +
Sbjct: 81 LERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFV-----SKNREK 134
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ +++ +D+ D ++++ +NI + M + FS
Sbjct: 135 LSQKRFDFVFVDDVDAVLKAS-----RNIDTLLMMVGIPEEIIRKAFSTIK---QGKIYE 186
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
K V + R L + + + + + +T +I + EK
Sbjct: 187 RPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVE 246
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
L L+F + K L + L K + + KN + F+
Sbjct: 247 LLEIF---RDGILIFAQTEEEGKELYEYLKRFK-----FNVGETWSEFEKNFEDFKVGKI 298
Query: 1129 SILLATDV----AARGLDIP-GIEHVIHYHVPRTSEI--YIHRSGRTARANNEGLTLVLI 1181
+IL+ RG+D+P I++VI + P ++ YI SGR++R N L +
Sbjct: 299 NILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVS 358
Query: 1182 ESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR 1236
E ++F SL+ ++ +E ++ + + + + +E +++
Sbjct: 359 VIFEED--EEIFESLKTRL---LLIAEEEIIEEAE--ANWKELVHEVEESRRRSE 406
Score = 197 bits (502), Expect = 5e-55
Identities = 78/558 (13%), Positives = 149/558 (26%), Gaps = 161/558 (28%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+N E +K K T Q + ++ K A TG GKT + L
Sbjct: 4 WNEYEDFRSFFKKKFGKDLTGYQRLWAK-RIVQGKSFTMVAPTGVGKTTFGMMTAL---- 58
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K + + ++ PT L Q
Sbjct: 59 -----------------------------------WLARKGKK---SALVFPTVTLVKQT 80
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC----PHILVATPGRLWEFIQLGHFHL 331
+ VK+ M E++ + HILV + + +
Sbjct: 81 LERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFV-----SKNREK 134
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ +++ +D+ D ++++ +NI
Sbjct: 135 LSQKRFDFVFVDDVDAVLKAS---------------------------------RNIDTL 161
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
+ M + FS K V + R L +
Sbjct: 162 LMMVGIPEEIIRKAFSTIK---QGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 218
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
+ I + + K+V+L
Sbjct: 219 FTVG-----RLVSVARNI------THVRIS-----------SRSKE--------KLVELL 248
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
E L+F + K L + L K
Sbjct: 249 EIFR-----------------------------DGILIFAQTEEEGKELYEYLKRFK--- 276
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDV----AARGLDIP-GIEHVIHYHVPRTSE 626
+ + KN + F+ +IL+ RG+D+P I++VI + P +
Sbjct: 277 --FNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPD 334
Query: 627 I--YIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNE-EEERAEADKEKTEDI 683
+ YI SGR++R N L + E + +L+ EEE E + +++
Sbjct: 335 VYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKEL 394
Query: 684 NVTVSSKKKKLKRKQNPS 701
V +++ +R+ +
Sbjct: 395 VHEVEESRRRSERELTDT 412
Score = 67.1 bits (164), Expect = 2e-11
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC----PHILVATP 1411
+ ++ PT L Q + VK+ M E++ + HILV +
Sbjct: 67 SALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 125
Query: 1412 GALS--LKRIDLAKSIEYL 1428
+S +++ + +++
Sbjct: 126 QFVSKNREKLSQKR-FDFV 143
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 191 bits (488), Expect = 4e-55
Identities = 82/279 (29%), Positives = 122/279 (43%), Gaps = 49/279 (17%)
Query: 727 SDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQK 786
H + + S + + S + + + + + A Q
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQL 61
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G+ PTKIQ +P AL +DI+G AETGSGKT AF +PIL
Sbjct: 62 GWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPIL------------------ 102
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
L E T +L+AL+L PTRELA Q+ G V+
Sbjct: 103 ----------NALLE-----------TPQRLFALVLTPTRELAFQISEQFEALGSSIGVQ 141
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG-HFHLTELYKINYLVIDETDRM 965
A +VGG+ + Q L K PHI++ATPGRL + ++ F+L + YLV+DE DR+
Sbjct: 142 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLR---ALKYLVMDEADRI 198
Query: 966 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004
+ E+ IL + + R+TF+FSAT+T ++
Sbjct: 199 LNMDFETEVDKILKVI-----PRDRKTFLFSATMTKKVQ 232
Score = 183 bits (467), Expect = 2e-52
Identities = 84/313 (26%), Positives = 122/313 (38%), Gaps = 84/313 (26%)
Query: 105 TEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDM-FVQMAEWVKFNIPETII 163
+ + + E + E F + + + +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMEEHDSPTEASQPIVEEEETKTFKDL------GVTDVLC 55
Query: 164 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE 223
A Q G+ PTKIQ +P AL +DI+G AETGSGKT AF +PIL
Sbjct: 56 EACDQLGWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPIL------------ 102
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
L E T +L+AL+L PTRELA Q+ G
Sbjct: 103 ----------------NALLE-----------TPQRLFALVLTPTRELAFQISEQFEALG 135
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG-HFHLTELYKINYLVI 342
V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L + YLV+
Sbjct: 136 SSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLR---ALKYLVM 192
Query: 343 DETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402
DE DR++ E+ IL + PR R+
Sbjct: 193 DEADRILNMDFETEVDKILKVI-------PRD--------------------------RK 219
Query: 403 TFVFSATLTHSLK 415
TF+FSAT+T ++
Sbjct: 220 TFLFSATMTKKVQ 232
Score = 90.4 bits (225), Expect = 4e-20
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 1341 QLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 1400
L+ + L AL+L PTRELA Q+ G V+ A +VGG+ + Q L
Sbjct: 103 NALLETPQRLF----ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL 158
Query: 1401 NKCPHILVATPGAL-----SLKRIDLAKSIEYL 1428
K PHI++ATPG L + K +L ++++YL
Sbjct: 159 AKKPHIIIATPGRLIDHLENTKGFNL-RALKYL 190
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 187 bits (477), Expect = 2e-53
Identities = 81/306 (26%), Positives = 126/306 (41%), Gaps = 56/306 (18%)
Query: 713 NDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDM-FVQMAEWV 771
+ + + + +K S L T ED F +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCN-- 59
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ E ++A+ + GF T+IQ + LL +D++ AA+TGSGKTLAF IP +
Sbjct: 60 --LVNENTLKAIKEMGFTNMTEIQHKSIR-PLLEGRDLLAAAKTGSGKTLAFLIPAV--- 113
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
E++ +L RN LIL+PTRELA+Q
Sbjct: 114 ----------------------ELIVKLR----------FMPRNGTGVLILSPTRELAMQ 141
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT-- 949
+ + + ++GG + + + L +I+VATPGRL L H T
Sbjct: 142 TFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRL-----LDHMQNTPG 196
Query: 950 -ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN--S 1006
+ LVIDE DR+++ G ELK I+ + RQT +FSAT T +++
Sbjct: 197 FMYKNLQCLVIDEADRILDVGFEEELKQIIKLL-----PTRRQTMLFSATQTRKVEDLAR 251
Query: 1007 LNLKKG 1012
++LKK
Sbjct: 252 ISLKKE 257
Score = 179 bits (455), Expect = 2e-50
Identities = 82/334 (24%), Positives = 128/334 (38%), Gaps = 84/334 (25%)
Query: 96 NDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDM-FVQMAEWV 154
+ + + + +K S L T ED F +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCN-- 59
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ E ++A+ + GF T+IQ + LL +D++ AA+TGSGKTLAF IP +
Sbjct: 60 --LVNENTLKAIKEMGFTNMTEIQHKSIR-PLLEGRDLLAAAKTGSGKTLAFLIPAV--- 113
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
E++ +L RN LIL+PTRELA+Q
Sbjct: 114 ----------------------ELIVKLR----------FMPRNGTGVLILSPTRELAMQ 141
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT-- 332
+ + + ++GG + + + L +I+VATPGRL L H T
Sbjct: 142 TFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRL-----LDHMQNTPG 196
Query: 333 -ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ LVIDE DR+++ G ELK I+ + P +
Sbjct: 197 FMYKNLQCLVIDEADRILDVGFEEELKQIIKLL-------PTR----------------- 232
Query: 392 VTMTETSQPRQTFVFSATLTHSLKN--SLNLKKG 423
RQT +FSAT T +++ ++LKK
Sbjct: 233 ---------RQTMLFSATQTRKVEDLARISLKKE 257
Score = 77.3 bits (191), Expect = 1e-15
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL+PTRELA+Q + + + ++GG + + + L +I+VATPG L
Sbjct: 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRL 187
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; HET: ADP;
2.15A {Homo sapiens}
Length = 236
Score = 185 bits (472), Expect = 4e-53
Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 50/259 (19%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
+ + + + + ++ + F + + ++ L + ++ T+IQ + AL KD
Sbjct: 6 RESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLAL-QGKD 64
Query: 809 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868
++GAA+TGSGKTLAF +P+L E L L+
Sbjct: 65 VLGAAKTGSGKTLAFLVPVL-------------------------EALYRLQ-------- 91
Query: 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928
+ + L LI++PTRELA Q + GK ++GG + + +N +
Sbjct: 92 --WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN-IN 148
Query: 929 ILVATPGRLWEFIQLGHFHLT---ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
ILV TPGRL L H T + LV+DE DR+++ G + +++ +
Sbjct: 149 ILVCTPGRL-----LQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL---- 199
Query: 986 TSQPRQTFVFSATLTHSLK 1004
+ RQT +FSAT T S+K
Sbjct: 200 -PKKRQTLLFSATQTKSVK 217
Score = 177 bits (450), Expect = 3e-50
Identities = 70/287 (24%), Positives = 118/287 (41%), Gaps = 78/287 (27%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
+ + + + + ++ + F + + ++ L + ++ T+IQ + AL KD
Sbjct: 6 RESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLAL-QGKD 64
Query: 192 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251
++GAA+TGSGKTLAF +P+L E L L+
Sbjct: 65 VLGAAKTGSGKTLAFLVPVL-------------------------EALYRLQ-------- 91
Query: 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311
+ + L LI++PTRELA Q + GK ++GG + + +N +
Sbjct: 92 --WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN-IN 148
Query: 312 ILVATPGRLWEFIQLGHFHLT---ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
ILV TPGRL L H T + LV+DE DR+++ G + +++ +
Sbjct: 149 ILVCTPGRL-----LQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL---- 199
Query: 369 TSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 415
P++ RQT +FSAT T S+K
Sbjct: 200 ---PKK--------------------------RQTLLFSATQTKSVK 217
Score = 77.3 bits (191), Expect = 1e-15
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LI++PTRELA Q + GK ++GG + + +N +ILV TPG L
Sbjct: 100 VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN-INILVCTPGRL 157
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA,
N project on protein structural and functional analyses;
2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 184 bits (469), Expect = 2e-52
Identities = 75/226 (33%), Positives = 107/226 (47%), Gaps = 35/226 (15%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ TI + ++ PT IQ +P A+L +DI+ A+TGSGKT AF IPI+ +V
Sbjct: 28 LKLDPTIRNNILLASYQRPTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIPIINHLV 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ N + LILAPTRELAIQ+
Sbjct: 87 CQDLNQQRYSKTAYPK------------------------------CLILAPTRELAIQI 116
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ TP++ V GG T Q+R + H+LVATPGRL +FI+ L
Sbjct: 117 LSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK---ISLE 173
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
Y+V+DE DRM++ G P+++ I++ M RQT +FSAT
Sbjct: 174 FCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN-RQTLMFSAT 218
Score = 177 bits (451), Expect = 4e-50
Identities = 74/229 (32%), Positives = 108/229 (47%), Gaps = 35/229 (15%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ TI + ++ PT IQ +P A+L +DI+ A+TGSGKT AF IPI+ +V
Sbjct: 28 LKLDPTIRNNILLASYQRPTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIPIINHLV 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ N + LILAPTRELAIQ+
Sbjct: 87 CQDLNQQRYSKTAYPK------------------------------CLILAPTRELAIQI 116
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ TP++ V GG T Q+R + H+LVATPGRL +FI+ L
Sbjct: 117 LSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK---ISLE 173
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
Y+V+DE DRM++ G P+++ I++ M RQT++ S FP+
Sbjct: 174 FCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN-RQTLMFSATFPK 221
Score = 80.7 bits (200), Expect = 1e-16
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
LILAPTRELAIQ+ + TP++ V GG T Q+R + H+LVATPG L
Sbjct: 103 CLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLV 162
Query: 1415 ---SLKRIDLAKSIEYL 1428
+I L + +Y+
Sbjct: 163 DFIEKNKISL-EFCKYI 178
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 173 bits (442), Expect = 2e-49
Identities = 70/237 (29%), Positives = 108/237 (45%), Gaps = 52/237 (21%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F II A+ F PT+IQ ++P L + +VG ++TG+GKT A+ +PI+
Sbjct: 9 FPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYLLPIM---- 63
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
E +K R ++ A+I APTRELA Q+
Sbjct: 64 -----------------------------------EKIKPERAEVQAVITAPTRELATQI 88
Query: 893 QNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
+ L K+ P + C++GG +K L LN PHI++ TPGR+ +FI+
Sbjct: 89 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALD- 147
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
++ + LV+DE D M++ G ++ I R + Q VFSAT+ LK
Sbjct: 148 --VHTAHILVVDEADLMLDMGFITDVDQIAAR-----MPKDLQMLVFSATIPEKLKP 197
Score = 165 bits (419), Expect = 3e-46
Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 53/241 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F II A+ F PT+IQ ++P L + +VG ++TG+GKT A+ +PI+
Sbjct: 9 FPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYLLPIM---- 63
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
E +K R ++ A+I APTRELA Q+
Sbjct: 64 -----------------------------------EKIKPERAEVQAVITAPTRELATQI 88
Query: 276 QNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
+ L K+ P + C++GG +K L LN PHI++ TPGR+ +FI+
Sbjct: 89 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALD- 147
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNILD 390
++ + LV+DE D M++ G ++ I R + Q ++ S P +LK L
Sbjct: 148 --VHTAHILVVDEADLMLDMGFITDVDQIAAR-----MPKDLQMLVFSATIPEKLKPFLK 200
Query: 391 R 391
+
Sbjct: 201 K 201
Score = 78.8 bits (195), Expect = 2e-16
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKCPHILVATP 1411
A+I APTRELA Q+ + L K+ P + C++GG +K L LN PHI++ TP
Sbjct: 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTP 134
Query: 1412 G 1412
G
Sbjct: 135 G 135
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 173 bits (440), Expect = 9e-49
Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 45/231 (19%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ + N P ++ + ++ F PT IQ+ P AL D+VG A+TGSGKTL++ +P +
Sbjct: 30 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGL-DMVGVAQTGSGKTLSYLLPAI 88
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
I ++ LE + L+LAPTREL
Sbjct: 89 VHINHQ----------------------PFLER------------GDGPICLVLAPTREL 114
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A QVQ + + +K C+ GG Q+R L + I +ATPGRL +F++ G
Sbjct: 115 AQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK--- 171
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP-RQTFVFSAT 998
T L + YLV+DE DRM++ G P+++ I+D++ +P RQT ++SAT
Sbjct: 172 TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTLMWSAT 216
Score = 165 bits (420), Expect = 5e-46
Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 45/233 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ + N P ++ + ++ F PT IQ+ P AL D+VG A+TGSGKTL++ +P +
Sbjct: 30 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGL-DMVGVAQTGSGKTLSYLLPAI 88
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
I ++ LE + L+LAPTREL
Sbjct: 89 VHINHQ----------------------PFLER------------GDGPICLVLAPTREL 114
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A QVQ + + +K C+ GG Q+R L + I +ATPGRL +F++ G
Sbjct: 115 AQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK--- 171
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP-RQTMIESGHFP 383
T L + YLV+DE DRM++ G P+++ I+D++ +P RQT++ S +P
Sbjct: 172 TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTLMWSATWP 218
Score = 79.9 bits (198), Expect = 2e-16
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
L+LAPTRELA QVQ + + +K C+ GG Q+R L + I +ATPG L
Sbjct: 105 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL- 163
Query: 1416 LKRIDL 1421
ID
Sbjct: 164 ---IDF 166
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 168 bits (428), Expect = 3e-47
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 43/226 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F +++++ + G PT IQS P L D++ A+TG+GKTL++ +P +
Sbjct: 25 FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGI-DLIVVAQTGTGKTLSYLMPGFIHL- 82
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
P ++ + L+L PTRELA+ V
Sbjct: 83 --DSQPISREQRNGPG------------------------------MLVLTPTRELALHV 110
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ Y +K C+ GG + Q+ ++K I++ATPGRL + L
Sbjct: 111 EAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS---VNLR 166
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
I YLVIDE D+M++ P+++ IL V RQT + SAT
Sbjct: 167 SITYLVIDEADKMLDMEFEPQIRKILLDVR-----PDRQTVMTSAT 207
Score = 160 bits (408), Expect = 1e-44
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 43/228 (18%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F +++++ + G PT IQS P L D++ A+TG+GKTL++ +P +
Sbjct: 25 FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGI-DLIVVAQTGTGKTLSYLMPGFIHL- 82
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
P ++ + L+L PTRELA+ V
Sbjct: 83 --DSQPISREQRNGPG------------------------------MLVLTPTRELALHV 110
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ Y +K C+ GG + Q+ ++K I++ATPGRL + L
Sbjct: 111 EAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS---VNLR 166
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
I YLVIDE D+M++ P+++ IL V RQT++ S +P
Sbjct: 167 SITYLVIDEADKMLDMEFEPQIRKILLDVR-----PDRQTVMTSATWP 209
Score = 78.0 bits (193), Expect = 5e-16
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG--- 1412
L+L PTRELA+ V+ Y +K C+ GG + Q+ ++K I++ATPG
Sbjct: 97 MLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLN 155
Query: 1413 -ALSLKRIDLAKSIEYL 1428
++L +SI YL
Sbjct: 156 DLQMNNSVNL-RSITYL 171
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 166 bits (422), Expect = 7e-47
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 47/227 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + I+ AL+ +G TPT IQ+ +P L KD++G A TG+GKTLAF +PI
Sbjct: 6 FPLKPEILEALHGRGLTTPTPIQAAALP-LALEGKDLIGQARTGTGKTLAFALPIA---- 60
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
E L +K R AL+L PTRELA+QV
Sbjct: 61 ------------------------ERLAPSQERG----RKPR----ALVLTPTRELALQV 88
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ + + +KV V GG KQ L + +VATPGR ++++ G L+ +
Sbjct: 89 ASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRV- 145
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
V+DE D M+ G E++ +L T RQT +FSATL
Sbjct: 146 --EVAVLDEADEMLSMGFEEEVEALLS-----ATPPSRQTLLFSATL 185
Score = 157 bits (400), Expect = 7e-44
Identities = 73/237 (30%), Positives = 107/237 (45%), Gaps = 48/237 (20%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + I+ AL+ +G TPT IQ+ +P L KD++G A TG+GKTLAF +PI
Sbjct: 6 FPLKPEILEALHGRGLTTPTPIQAAALP-LALEGKDLIGQARTGTGKTLAFALPIA---- 60
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
E L +K R AL+L PTRELA+QV
Sbjct: 61 ------------------------ERLAPSQERG----RKPR----ALVLTPTRELALQV 88
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ + + +KV V GG KQ L + +VATPGR ++++ G L+ +
Sbjct: 89 ASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRV- 145
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNILDR 391
V+DE D M+ G E++ +L T RQT++ S P K + +R
Sbjct: 146 --EVAVLDEADEMLSMGFEEEVEALLS-----ATPPSRQTLLFSATLPSWAKRLAER 195
Score = 76.0 bits (188), Expect = 2e-15
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+L PTRELA+QV + + + +KV V GG KQ L + +VATPG
Sbjct: 75 ALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPG 129
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 165 bits (421), Expect = 4e-46
Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 48/233 (20%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
++ I +++ + GF+ PT IQ +P +L ++++ +A TGSGKTLAF IPIL +
Sbjct: 33 EYKINSRLLQNILDAGFQMPTPIQMQAIP-VMLHGRELLASAPTGSGKTLAFSIPILMQL 91
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+ ALI++PTRELA Q
Sbjct: 92 K--------------------------------------QPANKGFRALIISPTRELASQ 113
Query: 892 VQNHILDAGKYTPVKVACVVGGMS-TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950
+ ++ + T ++ + +K +K ILV TP RL ++ +
Sbjct: 114 IHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGID- 172
Query: 951 LYKINYLVIDETDRMIESGH--F-PELKNILDRVTMTETSQPRQTFVFSATLT 1000
L + +LV+DE+D++ E G F +L +I T + + +FSAT
Sbjct: 173 LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK----VRRAMFSATFA 221
Score = 160 bits (408), Expect = 2e-44
Identities = 57/258 (22%), Positives = 99/258 (38%), Gaps = 70/258 (27%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
++ I +++ + GF+ PT IQ +P +L ++++ +A TGSGKTLAF IPIL +
Sbjct: 33 EYKINSRLLQNILDAGFQMPTPIQMQAIP-VMLHGRELLASAPTGSGKTLAFSIPILMQL 91
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+ ALI++PTRELA Q
Sbjct: 92 K--------------------------------------QPANKGFRALIISPTRELASQ 113
Query: 275 VQNHILDAGKYTPVKVACVVGGMS-TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333
+ ++ + T ++ + +K +K ILV TP RL ++ +
Sbjct: 114 IHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGID- 172
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
L + +LV+DE+D++ + G +L +I T
Sbjct: 173 LASVEWLVVDESDKL------------FEDGKT-------------GFRDQLASIFLACT 207
Query: 394 MTETSQPRQTFVFSATLT 411
+ + +FSAT
Sbjct: 208 SHK----VRRAMFSATFA 221
Score = 75.7 bits (187), Expect = 4e-15
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS-TEKQLRILNKCPHILVATPGAL 1414
ALI++PTRELA Q+ ++ + T ++ + +K +K ILV TP L
Sbjct: 101 ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRL 160
Query: 1415 ------SLKRIDLAKSIEYL 1428
IDL S+E+L
Sbjct: 161 IYLLKQDPPGIDL-ASVEWL 179
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 160 bits (408), Expect = 5e-45
Identities = 51/234 (21%), Positives = 105/234 (44%), Gaps = 49/234 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + ++ +++ G++ P+ IQ +P L+ +DI+ A+ G+GK+ A+ IP+L
Sbjct: 8 YCLKRELLMGIFEMGWEKPSPIQEESIP-IALSGRDILARAKNGTGKSGAYLIPLL---- 62
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
E + ++ + A+++ PTRELA+QV
Sbjct: 63 -----------------------------------ERLDLKKDNIQAMVIVPTRELALQV 87
Query: 893 QNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
+ K+ KV GG + + L+ H+++ATPGR+ + I+ G +
Sbjct: 88 SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDH- 146
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+ +V+DE D+++ +++I+ + RQ ++SAT S++
Sbjct: 147 --VQMIVLDEADKLLSQDFVQIMEDIIL-----TLPKNRQILLYSATFPLSVQK 193
Score = 153 bits (389), Expect = 2e-42
Identities = 50/238 (21%), Positives = 106/238 (44%), Gaps = 50/238 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + ++ +++ G++ P+ IQ +P L+ +DI+ A+ G+GK+ A+ IP+L
Sbjct: 8 YCLKRELLMGIFEMGWEKPSPIQEESIP-IALSGRDILARAKNGTGKSGAYLIPLL---- 62
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
E + ++ + A+++ PTRELA+QV
Sbjct: 63 -----------------------------------ERLDLKKDNIQAMVIVPTRELALQV 87
Query: 276 QNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
+ K+ KV GG + + L+ H+++ATPGR+ + I+ G +
Sbjct: 88 SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDH- 146
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNILDR 391
+ +V+DE D+++ +++I+ + RQ ++ S FP ++ ++
Sbjct: 147 --VQMIVLDEADKLLSQDFVQIMEDIIL-----TLPKNRQILLYSATFPLSVQKFMNS 197
Score = 78.0 bits (193), Expect = 3e-16
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A+++ PTRELA+QV + K+ KV GG + + L+ H+++ATPG +
Sbjct: 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI 133
Query: 1415 SLKRIDLAK 1423
+DL K
Sbjct: 134 ----LDLIK 138
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 161 bits (409), Expect = 8e-45
Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 53/251 (21%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
++ T+ ++ + ++ + E ++R ++ GF+ P+ IQ + ++ D++ A
Sbjct: 4 QIQTNYDK----VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQA 58
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
++G+GKT F I L + + +
Sbjct: 59 QSGTGKTGTFSIAAL---------------------------------------QRIDTS 79
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L + I+V T
Sbjct: 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGT 138
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGR+++ IQ F + I ++DE D M+ SG ++ I Q
Sbjct: 139 PGRVFDNIQRRRFRTDK---IKMFILDEADEMLSSGFKEQIYQIFT-----LLPPTTQVV 190
Query: 994 VFSATLTHSLK 1004
+ SAT+ + +
Sbjct: 191 LLSATMPNDVL 201
Score = 150 bits (381), Expect = 5e-41
Identities = 56/279 (20%), Positives = 106/279 (37%), Gaps = 81/279 (29%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
++ T+ ++ + ++ + E ++R ++ GF+ P+ IQ + ++ D++ A
Sbjct: 4 QIQTNYDK----VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQA 58
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
++G+GKT F I L + + +
Sbjct: 59 QSGTGKTGTFSIAAL---------------------------------------QRIDTS 79
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L + I+V T
Sbjct: 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGT 138
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+++ IQ F + I ++DE D M+ SG ++ I
Sbjct: 139 PGRVFDNIQRRRFRTDK---IKMFILDEADEMLSSGFKEQIYQIFT-------------- 181
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 415
Q + SAT+ + +
Sbjct: 182 -------------------LLPPTTQVVLLSATMPNDVL 201
Score = 78.7 bits (195), Expect = 3e-16
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L + I+V TPG
Sbjct: 85 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPG 140
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Length = 237
Score = 160 bits (407), Expect = 2e-44
Identities = 62/265 (23%), Positives = 111/265 (41%), Gaps = 50/265 (18%)
Query: 743 QTYTSANKELLEVDTSNNEDMFVQMAE-WVKFNIPETIIRALYQKGFKTPTKIQSMVMPS 801
+ S+ +E L E + ++ + + N+ E+++R +Y GF+ P+ IQ +
Sbjct: 4 HHHHSSGRENLYFQGGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII- 62
Query: 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861
+ D++ A++G+GKT F I IL
Sbjct: 63 PCIKGYDVIAQAQSGTGKTATFAISIL--------------------------------- 89
Query: 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921
+ ++ + AL+LAPTRELA Q+Q IL G Y +GG + +++
Sbjct: 90 ------QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 143
Query: 922 IL-NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 980
L + PHI+V TPGR+++ + + I V+DE D M+ G ++ I
Sbjct: 144 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKW---IKMFVLDEADEMLSRGFKDQIYEIFQ- 199
Query: 981 VTMTETSQPRQTFVFSATLTHSLKN 1005
+ + Q + SAT+ +
Sbjct: 200 ----KLNTSIQVVLLSATMPTDVLE 220
Score = 149 bits (379), Expect = 1e-40
Identities = 62/293 (21%), Positives = 111/293 (37%), Gaps = 78/293 (26%)
Query: 126 QTYTSANKELLEVDTSNNEDMFVQMAE-WVKFNIPETIIRALYQKGFKTPTKIQSMVMPS 184
+ S+ +E L E + ++ + + N+ E+++R +Y GF+ P+ IQ +
Sbjct: 4 HHHHSSGRENLYFQGGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII- 62
Query: 185 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 244
+ D++ A++G+GKT F I IL
Sbjct: 63 PCIKGYDVIAQAQSGTGKTATFAISIL--------------------------------- 89
Query: 245 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 304
+ ++ + AL+LAPTRELA Q+Q IL G Y +GG + +++
Sbjct: 90 ------QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 143
Query: 305 IL-NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 363
L + PHI+V TPGR+++ + + I V+DE D M+ G ++ I
Sbjct: 144 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKW---IKMFVLDEADEMLSRGFKDQIYEIFQ- 199
Query: 364 VTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416
+ + Q + SAT+ +
Sbjct: 200 --------------------------------KLNTSIQVVLLSATMPTDVLE 220
Score = 79.2 bits (196), Expect = 2e-16
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL-NKCPHILVATPG 1412
AL+LAPTRELA Q+Q IL G Y +GG + +++ L + PHI+V TPG
Sbjct: 101 ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPG 158
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics,
structural genomics consortium, SGC, hydrolase; HET: ADP;
1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 159 bits (405), Expect = 3e-44
Identities = 56/260 (21%), Positives = 98/260 (37%), Gaps = 51/260 (19%)
Query: 748 ANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK 807
++L T + + + A++ + ++ L GF+ P+ +Q +P
Sbjct: 4 TAQDLSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIP-LGRCGL 62
Query: 808 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867
D++ A++G+GKT F L
Sbjct: 63 DLIVQAKSGTGKTCVFSTIAL--------------------------------------- 83
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKC 926
+ + LILAPTRE+A+Q+ + I G ++ +GG + L K
Sbjct: 84 DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK- 142
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTE 985
HI V +PGR+ + I+L + + I ++DE D+++E G F E + I
Sbjct: 143 CHIAVGSPGRIKQLIELDYLNPGS---IRLFILDEADKLLEEGSFQEQINWIYS-----S 194
Query: 986 TSQPRQTFVFSATLTHSLKN 1005
+Q SAT L N
Sbjct: 195 LPASKQMLAVSATYPEFLAN 214
Score = 150 bits (381), Expect = 4e-41
Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 52/264 (19%)
Query: 131 ANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK 190
++L T + + + A++ + ++ L GF+ P+ +Q +P
Sbjct: 4 TAQDLSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIP-LGRCGL 62
Query: 191 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250
D++ A++G+GKT F L
Sbjct: 63 DLIVQAKSGTGKTCVFSTIAL--------------------------------------- 83
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKC 309
+ + LILAPTRE+A+Q+ + I G ++ +GG + L K
Sbjct: 84 DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK- 142
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTE 368
HI V +PGR+ + I+L + + I ++DE D+++E G F E + I
Sbjct: 143 CHIAVGSPGRIKQLIELDYLNPGS---IRLFILDEADKLLEEGSFQEQINWIYS-----S 194
Query: 369 TSQPRQTMIESGHFP-ELKNILDR 391
+Q + S +P L N L +
Sbjct: 195 LPASKQMLAVSATYPEFLANALTK 218
Score = 75.3 bits (186), Expect = 4e-15
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
LILAPTRE+A+Q+ + I G ++ +GG + L K HI V +PG
Sbjct: 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIAVGSPG 151
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP:
c.37.1.19
Length = 220
Score = 158 bits (402), Expect = 5e-44
Identities = 61/230 (26%), Positives = 97/230 (42%), Gaps = 51/230 (22%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L +
Sbjct: 19 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATLQQLE 77
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ L++ TRELA Q+
Sbjct: 78 PVTGQVS---------------------------------------VLVMCHTRELAFQI 98
Query: 893 QNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NKCPHILVATPGRLWEFIQLGHFHLTE 950
KY P VKVA GG+S +K +L CPHI+V TPGR+ + +L
Sbjct: 99 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK- 157
Query: 951 LYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATL 999
I + ++DE D+M+E ++ I T +Q +FSATL
Sbjct: 158 --HIKHFILDECDKMLEQLDMRRDVQEIFR-----MTPHEKQVMMFSATL 200
Score = 149 bits (379), Expect = 6e-41
Identities = 62/257 (24%), Positives = 101/257 (39%), Gaps = 77/257 (29%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L +
Sbjct: 19 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATLQQLE 77
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ L++ TRELA Q+
Sbjct: 78 PVTGQVS---------------------------------------VLVMCHTRELAFQI 98
Query: 276 QNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NKCPHILVATPGRLWEFIQLGHFHLTE 333
KY P VKVA GG+S +K +L CPHI+V TPGR+ + +L
Sbjct: 99 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK- 157
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
I + ++DE D+M L+++ M +++ I
Sbjct: 158 --HIKHFILDECDKM------------LEQLDMRR---------------DVQEIFR--- 185
Query: 394 MTETSQPRQTFVFSATL 410
T +Q +FSATL
Sbjct: 186 --MTPHEKQVMMFSATL 200
Score = 80.4 bits (199), Expect = 7e-17
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NKCPHILVATPG 1412
L++ TRELA Q+ KY P VKVA GG+S +K +L CPHI+V TPG
Sbjct: 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPG 143
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 154 bits (392), Expect = 9e-42
Identities = 68/337 (20%), Positives = 134/337 (39%), Gaps = 63/337 (18%)
Query: 673 AEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHS 732
++ E ++S+ K ++ + + + + KT+E + ++ +
Sbjct: 6 WALAVDEQEAAAESLSNLHLKEEKIKPDT-------NGAVVKTNANAEKTDEEEKEDRAA 58
Query: 733 KKLKQKKKKKQTYTSANK-ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTP 791
+ L K + + N+ E+L+ D ++ + + + + +++ +Y GF P
Sbjct: 59 QSLLNKLIRSNLVDNTNQVEVLQRDPNSPLY---SVKSFEELRLKPQLLQGVYAMGFNRP 115
Query: 792 TKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 850
+KIQ +P L ++++ +++G+GKT AF + +L+ + + P
Sbjct: 116 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ----------- 164
Query: 851 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVAC 909
L L+PT ELA+Q I GK+ P +K+A
Sbjct: 165 ----------------------------CLCLSPTYELALQTGKVIEQMGKFYPELKLAY 196
Query: 910 VVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES- 968
V G E+ +I I++ TPG + ++ + KI V+DE D MI +
Sbjct: 197 AVRGNKLERGQKIS---EQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVMIATQ 251
Query: 969 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
GH + I + Q +FSAT S+
Sbjct: 252 GHQDQSIRIQ-----RMLPRNCQMLLFSATFEDSVWK 283
Score = 147 bits (374), Expect = 3e-39
Identities = 65/335 (19%), Positives = 134/335 (40%), Gaps = 63/335 (18%)
Query: 54 EEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEP 113
+ ++ E ++S+ K ++ + + + + KT+E + ++
Sbjct: 4 DSWALAVDEQEAAAESLSNLHLKEEKIKPDT-------NGAVVKTNANAEKTDEEEKEDR 56
Query: 114 SSKKLKQKKKKKQTYTSANK-ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFK 172
+++ L K + + N+ E+L+ D ++ + + + + +++ +Y GF
Sbjct: 57 AAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLY---SVKSFEELRLKPQLLQGVYAMGFN 113
Query: 173 TPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231
P+KIQ +P L ++++ +++G+GKT AF + +L+ + + P
Sbjct: 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ--------- 164
Query: 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKV 290
L L+PT ELA+Q I GK+ P +K+
Sbjct: 165 ------------------------------CLCLSPTYELALQTGKVIEQMGKFYPELKL 194
Query: 291 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 350
A V G E+ +I I++ TPG + ++ + KI V+DE D MI
Sbjct: 195 AYAVRGNKLERGQKIS---EQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVMIA 249
Query: 351 S-GHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ GH + I + Q ++ S F +
Sbjct: 250 TQGHQDQSIRIQ-----RMLPRNCQMLLFSATFED 279
Score = 69.7 bits (171), Expect = 9e-13
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
L L+PT ELA+Q I GK+ P +K+A V G E+ +I I++ TPG
Sbjct: 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS---EQIVIGTPG 219
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer,
ATP-binding, helicase, hydrolase, nucleotide-binding;
2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Length = 212
Score = 130 bits (328), Expect = 3e-34
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 519 TLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
T E + + L + + P R +VF + + + + Q L L LH
Sbjct: 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 64
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
++Q +R + L FR +L+ATDVAARGLDIP ++ V+HY +P +E Y HRSGRT R
Sbjct: 65 LSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGR 124
Query: 638 ANNEGLTVVLIESDEI 653
A G V+L E
Sbjct: 125 AGRGGRVVLLYGPRER 140
Score = 130 bits (328), Expect = 3e-34
Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 1052 TLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
T E + + L + + P R +VF + + + + Q L L LH
Sbjct: 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 64
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
++Q +R + L FR +L+ATDVAARGLDIP ++ V+HY +P +E Y HRSGRT R
Sbjct: 65 LSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGR 124
Query: 1171 ANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
A G ++L E + +LE+ V
Sbjct: 125 AGRGGRVVLLYGPRE----RRDVEALERAV 150
Score = 36.1 bits (84), Expect = 0.044
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 21/102 (20%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-------KVDLPDFPIDES 1289
+ + HRSGRT RA G ++L E + +LE+ +V+ P +
Sbjct: 112 AEAYQHRSGRTGRAGRGGRVVLLYGPRE----RRDVEALERAVGRRFKRVNPP------T 161
Query: 1290 VLSLIKKRIDLAKS--IEYLESKIKKNRP--DNWLEKAAKDM 1327
+++ + + E + + + ++
Sbjct: 162 PEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEV 203
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase,
nucleotide-binding; 2.80A {Thermus thermophilus}
Length = 300
Score = 132 bits (333), Expect = 8e-34
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 519 TLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
T E + + L + + P R +VF + + + + Q L L LH
Sbjct: 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 61
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
M+Q +R + + FR +L+ATDVAARGLDIP ++ V+HY +P +E Y HRSGRT R
Sbjct: 62 MSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGR 121
Query: 638 ANNEGLTVVLIESDEI 653
A G V+L E
Sbjct: 122 AGRGGRVVLLYGPRER 137
Score = 131 bits (332), Expect = 8e-34
Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 1052 TLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
T E + + L + + P R +VF + + + + Q L L LH
Sbjct: 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 61
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
M+Q +R + + FR +L+ATDVAARGLDIP ++ V+HY +P +E Y HRSGRT R
Sbjct: 62 MSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGR 121
Query: 1171 ANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
A G ++L E + +LE+ V
Sbjct: 122 AGRGGRVVLLYGPRE----RRDVEALERAV 147
Score = 37.0 bits (86), Expect = 0.037
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK-------KVDLPDFP-IDE 1288
+ + HRSGRT RA G ++L E + +LE+ +V+ P + E
Sbjct: 109 AEAYQHRSGRTGRAGRGGRVVLLYGPRE----RRDVEALERAVGRRFKRVNPPTPEEVLE 164
Query: 1289 SVLSLIKKRID--LAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDE 1334
+ + R+ K + + + +E A + +++
Sbjct: 165 AKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGA 212
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 126 bits (319), Expect = 3e-33
Identities = 40/119 (33%), Positives = 65/119 (54%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
K + K YL + + P L+F + V + + L + + +H +Q +R
Sbjct: 35 EYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 94
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
K ++ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT + N G+
Sbjct: 95 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI 153
Score = 126 bits (319), Expect = 3e-33
Identities = 40/119 (33%), Positives = 65/119 (54%)
Query: 1058 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 1117
K + K YL + + P L+F + V + + L + + +H +Q +R
Sbjct: 35 EYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 94
Query: 1118 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
K ++ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT + N G+
Sbjct: 95 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI 153
Score = 29.9 bits (68), Expect = 3.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1238 DNWLHRSGRTARANNEGL 1255
+N++HR GRT + N G+
Sbjct: 136 ENYVHRIGRTGCSGNTGI 153
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity
A; hydrolase inhibitor-hydrolase complex, DEAD box RNA
helicase; 2.90A {Escherichia coli}
Length = 170
Score = 123 bits (311), Expect = 2e-32
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 528 KHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ K + L + + Q R++VF V L L + L M Q +R +
Sbjct: 13 DLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEA 72
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
+ R + ++L+ATDVAARG+DIP + HV ++ +PR+ + Y+HR GRTARA +G +
Sbjct: 73 IKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132
Query: 647 LIESDEIPL 655
L+E+ + L
Sbjct: 133 LVEAHDHLL 141
Score = 122 bits (308), Expect = 5e-32
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 1061 KHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
+ K + L + + Q R++VF V L L + L M Q +R +
Sbjct: 13 DLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEA 72
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
+ R + ++L+ATDVAARG+DIP + HV ++ +PR+ + Y+HR GRTARA +G +
Sbjct: 73 IKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132
Query: 1180 LIESDEIPL 1188
L+E+ + L
Sbjct: 133 LVEAHDHLL 141
Score = 37.5 bits (88), Expect = 0.010
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1235 NRPDNWLHRSGRTARANNEGLTLVLIESDEIPL 1267
D +LHR GRTARA +G + L+E+ + L
Sbjct: 109 RSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 141
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase;
1.95A {Bacillus subtilis}
Length = 163
Score = 122 bits (308), Expect = 5e-32
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 516 ITKTLTESKI-----LCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
+ LT I + + K S L + ++P ++FC + V +LT L L
Sbjct: 1 MAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGY 60
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+H M Q R ++ F+ L+ATDVAARG+DI I VI+Y +P E Y+
Sbjct: 61 PCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYV 120
Query: 630 HRSGRTARANNEGLTVVLIESDEIPL 655
HR+GRT RA N+G + + + E
Sbjct: 121 HRTGRTGRAGNKGKAISFVTAFEKRF 146
Score = 121 bits (306), Expect = 7e-32
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 10/156 (6%)
Query: 1049 ITKTLTESKI-----LCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKC 1102
+ LT I + + K S L + ++P ++FC + V +LT L L
Sbjct: 1 MAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGY 60
Query: 1103 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162
+H M Q R ++ F+ L+ATDVAARG+DI I VI+Y +P E Y+
Sbjct: 61 PCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYV 120
Query: 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
HR+GRT RA N+G + + + E + +E+
Sbjct: 121 HRTGRTGRAGNKGKAISFVTAFE----KRFLADIEE 152
Score = 33.6 bits (78), Expect = 0.21
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1277
++++HR+GRT RA N+G + + + E + +E+
Sbjct: 116 KESYVHRTGRTGRAGNKGKAISFVTAFE----KRFLADIEE 152
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 122 bits (308), Expect = 8e-32
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 525 ILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+ + +K S+L + TLVF + L L + +H +QR
Sbjct: 25 VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 84
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
R + L +FR + IL+AT VAARGLDI ++HVI++ +P E Y+HR GRT R N G
Sbjct: 85 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 144
Query: 643 L 643
L
Sbjct: 145 L 145
Score = 122 bits (308), Expect = 8e-32
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 1058 ILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
+ + +K S+L + TLVF + L L + +H +QR
Sbjct: 25 VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 84
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
R + L +FR + IL+AT VAARGLDI ++HVI++ +P E Y+HR GRT R N G
Sbjct: 85 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 144
Query: 1176 L 1176
L
Sbjct: 145 L 145
Score = 30.6 bits (70), Expect = 2.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1238 DNWLHRSGRTARANNEGL 1255
+ ++HR GRT R N GL
Sbjct: 128 EEYVHRIGRTGRVGNLGL 145
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like
fold, PRE-mRNA processing protein; 1.90A {Homo sapiens}
SCOP: c.37.1.19
Length = 172
Score = 116 bits (292), Expect = 8e-30
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 1058 ILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
+ K +EK+ L+ + + + ++F S+ L QLL + +H M Q +R
Sbjct: 11 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 70
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
L +F+D IL+AT++ RG+DI + +Y +P S+ Y+HR R R +GL
Sbjct: 71 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 130
Query: 1177 --TLVLIESDEIPLYIKMFNSLEK--KVDLPDFPIDESVLSLIKKR 1218
T V E+D K+ N ++ +V++ + P + + S I++
Sbjct: 131 AITFVSDEND-----AKILNDVQDRFEVNISELPDEIDISSYIEQT 171
Score = 114 bits (289), Expect = 2e-29
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 525 ILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+ K +EK+ L+ + + + ++F S+ L QLL + +H M Q +R
Sbjct: 11 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 70
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L +F+D IL+AT++ RG+DI + +Y +P S+ Y+HR R R +GL
Sbjct: 71 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 130
Query: 644 TVVLIESDE 652
+ + +
Sbjct: 131 AITFVSDEN 139
Score = 32.2 bits (74), Expect = 0.76
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 1237 PDNWLHRSGRTARANNEGL--TLVLIESDEIPLYIKMFNSLEK--KVDLPDFPIDESVLS 1292
D +LHR R R +GL T V E+D K+ N ++ +V++ + P + + S
Sbjct: 112 SDTYLHRVARAGRFGTKGLAITFVSDEND-----AKILNDVQDRFEVNISELPDEIDISS 166
Query: 1293 LIKKR 1297
I++
Sbjct: 167 YIEQT 171
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 117 bits (294), Expect = 2e-27
Identities = 92/547 (16%), Positives = 176/547 (32%), Gaps = 96/547 (17%)
Query: 166 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225
+ ++ P Q ++ + + TG GKTL +
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIA--------------- 44
Query: 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 285
E L + L+LAPT+ L +Q
Sbjct: 45 ----------EYRLT----------------KYGGKVLMLAPTKPLVLQHAESFRRLFNL 78
Query: 286 TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDET 345
P K+ + G S E++ + + ++VATP + + G L ++ +V DE
Sbjct: 79 PPEKIVALTGEKSPEERSKAWARA-KVIVATPQTIENDLLAGRISLE---DVSLIVFDEA 134
Query: 346 DRMIESGHFPELKNILDRVT-----MTETSQPRQTMIESGHFPELKNILDRVTMTETSQP 400
R + + + + R + T+ P T + I +E S
Sbjct: 135 HRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPD 194
Query: 401 RQTFV----------------------FSATLTHSLKN--SLNLKKGQSKSKKVSKGDPS 436
+ +V L +LK L + S + +
Sbjct: 195 VRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRA 254
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
+ + + + + + L + L + L + + Y + L EE
Sbjct: 255 GQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI------KKLYEEA 308
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-----PGRTLVFC 551
+ S +I L ++K + K L I + + +VF
Sbjct: 309 KAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFT 368
Query: 552 NSISSVKRLTQLLTM--LKCSPLPLHAS------MNQRQRLKNLDRFRDQNNSILLATDV 603
N + K++ L +K AS ++QR++ LD F ++L+AT V
Sbjct: 369 NYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSV 428
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQE 663
GLD+P ++ V+ Y ++ I R GRT R G ++L+ ++ ++
Sbjct: 429 GEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEAYYWSSRQ 487
Query: 664 EENNEEE 670
+E +E
Sbjct: 488 KEKIMQE 494
Score = 81.0 bits (199), Expect = 1e-15
Identities = 52/286 (18%), Positives = 102/286 (35%), Gaps = 16/286 (5%)
Query: 929 ILVATPGRLWEFIQLGHFHLTELYK--INYLVIDETDRMIESGHFPELKNILDRVTMTET 986
+ V P E +L L + K +++ + I I++ M +
Sbjct: 207 VRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINE-EMAKG 265
Query: 987 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 1046
+ + + + L +++ L + Q S + + + S +I
Sbjct: 266 NHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 325
Query: 1047 IGITKTLTESKILCKHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTM-- 1099
L ++K + K L I + + +VF N + K++ L
Sbjct: 326 KKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG 385
Query: 1100 LKCSPLPLHAS------MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
+K AS ++QR++ LD F ++L+AT V GLD+P ++ V+ Y
Sbjct: 386 IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYE 445
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
++ I R GRT R + +++ + Y EK
Sbjct: 446 PVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAYYWSSRQKEKI 491
Score = 54.0 bits (129), Expect = 3e-07
Identities = 41/277 (14%), Positives = 85/277 (30%), Gaps = 53/277 (19%)
Query: 783 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842
+ ++ P Q ++ + + TG GKTL +
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIA--------------- 44
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 902
E L + L+LAPT+ L +Q
Sbjct: 45 ----------EYRLT----------------KYGGKVLMLAPTKPLVLQHAESFRRLFNL 78
Query: 903 TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDET 962
P K+ + G S E++ + + ++VATP + + G L ++ +V DE
Sbjct: 79 PPEKIVALTGEKSPEERSKAWARA-KVIVATPQTIENDLLAGRISLE---DVSLIVFDEA 134
Query: 963 DRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 1022
R + + + + R ++ +A+ + + + + +
Sbjct: 135 HRAVGNYAYVFIAREYKR-----QAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRS 189
Query: 1023 DPSIKRLQDLLNIKSPKI-VDLTEKIGITKTLTESKI 1058
+ S + I+ + VDL E + L +
Sbjct: 190 ENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREML 226
Score = 37.9 bits (87), Expect = 0.026
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 1341 QLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 1400
++I E R +Y L+LAPT+ L +Q P K+ + G S E++ +
Sbjct: 40 AMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW 99
Query: 1401 NKCPHILVATPGAL 1414
+ ++VATP +
Sbjct: 100 ARA-KVIVATPQTI 112
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
genomics, structural consortium, SGC, alternative
initiation, ATP-binding, devel protein; 2.80A {Homo
sapiens}
Length = 175
Score = 105 bits (265), Expect = 3e-26
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
G+ ++FC + + K LT + L + QR + RFRD +L+ T+V
Sbjct: 34 IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV 93
Query: 604 AARGLDIPGIEHVIHYHVPRTS------EIYIHRSGRTARANNEGLTVVLIESDEI 653
ARG+D+ + V+++ +P E Y+HR GRT R +GL +IE DE+
Sbjct: 94 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDEL 149
Score = 104 bits (262), Expect = 9e-26
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
G+ ++FC + + K LT + L + QR + RFRD +L+ T+V
Sbjct: 34 IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV 93
Query: 1137 AARGLDIPGIEHVIHYHVPRTS------EIYIHRSGRTARANNEGLTLVLIESDEI 1186
ARG+D+ + V+++ +P E Y+HR GRT R +GL +IE DE+
Sbjct: 94 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDEL 149
Score = 29.5 bits (67), Expect = 5.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEI 1265
+ +LHR GRT R +GL +IE DE+
Sbjct: 121 YETYLHRIGRTGRFGKKGLAFNMIEVDEL 149
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 104 bits (263), Expect = 6e-26
Identities = 33/110 (30%), Positives = 64/110 (58%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+ ++FCN+ V+ LT L K + +++ + Q++R + FR ++ IL++TD+
Sbjct: 30 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 89
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
ARG+D+ + VI+Y +P E YIHR GR R +G+ + + ++++
Sbjct: 90 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139
Score = 103 bits (260), Expect = 1e-25
Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 6/134 (4%)
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
+ ++FCN+ V+ LT L K + +++ + Q++R + FR ++ IL++TD+
Sbjct: 30 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 89
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
ARG+D+ + VI+Y +P E YIHR GR R +G+ + + +++ + L
Sbjct: 90 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED----VGAMREL 145
Query: 1197 EK--KVDLPDFPID 1208
EK + + P D
Sbjct: 146 EKFYSTQIEELPSD 159
Score = 29.1 bits (66), Expect = 6.5
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK--KVDLPDFPID 1287
+N++HR GR R +G+ + + +++ + LEK + + P D
Sbjct: 111 KENYIHRIGRGGRFGRKGVAINFVTNED----VGAMRELEKFYSTQIEELPSD 159
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 81.4 bits (200), Expect = 2e-15
Identities = 104/611 (17%), Positives = 183/611 (29%), Gaps = 179/611 (29%)
Query: 94 NTNDPDDQVNKTEEIQ------SDEPSSKKL--KQKKKKKQTYTSANKELLEVD------ 139
+ D + EEI + +L K+++ +E+L ++
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 140 --------TSNNEDMFVQMAE--------WVKFNIP-----ETIIRALYQKGFKTPTKIQ 178
S M+++ + + K+N+ + +AL +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---------- 146
Query: 179 SMVMPSALLARKDIVGAAETGSGKT-LA--------------FGIPILT--------GIV 215
+ P+ + I G GSGKT +A F I L ++
Sbjct: 147 --LRPAKNVL---IDGVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 216 NKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK--LYAL--------- 263
L+ + D N + + + + + A +K + L L
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 264 --------ILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC------ 309
IL TR QV + L A T + + ++ ++ +L K
Sbjct: 260 NAFNLSCKILLTTRF--KQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 310 --PHILVAT-P---GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 363
P ++ T P + E I+ + +K ++ D+ +IES L +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIR-DGLATWDNWK--HVNCDKLTTIIESS----LNVL--- 366
Query: 364 VTMTETSQPRQTMIESGHFPELKNI----LDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419
E ++ R+ FP +I L + V K SL
Sbjct: 367 ----EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-----NKLHKYSL- 416
Query: 420 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD----E 475
++K Q K +S I + L +K L I + K D
Sbjct: 417 VEK-QPKESTIS-----IPSIYLELKVKLENEYALHRSI-VDH-YNIPKTFDSDDLIPPY 468
Query: 476 KDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI-VD---LTEKI-----------GITKTL 520
D Y Y I H E L + +D L +KI I TL
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLF----RMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 521 TESKI----LCKHDEKDSYLYY----FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
+ K +C +D K L F+ + L+ S L ++ M + +
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKI-EENLI----CSKYTDLLRIALMAEDEAI 579
Query: 573 PLHASMNQRQR 583
A Q QR
Sbjct: 580 FEEAH-KQVQR 589
Score = 73.0 bits (178), Expect = 7e-13
Identities = 86/532 (16%), Positives = 152/532 (28%), Gaps = 165/532 (31%)
Query: 649 ESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSEL 708
E+ E + K L E+ D + +D+ ++ SK+ E+ +
Sbjct: 10 ETGEHQYQYKDILSV---FEDAFVDNFDCKDVQDMPKSILSKE------------EIDHI 54
Query: 709 SANTNDPDDQV--------NKTEEI---------QSD-----EPHSKKLKQKKKKKQTYT 746
+ D +K EE+ + + P + +Q + Y
Sbjct: 55 -IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 747 SANKELLEVDTSNNEDMFVQMAEWVKFNIP-----ETIIRALYQKGFKTPTKIQSMVMPS 801
L N+ +F K+N+ + +AL + + P+
Sbjct: 114 EQRDRL-----YNDNQVFA------KYNVSRLQPYLKLRQALLE------------LRPA 150
Query: 802 ALLARKDIVGAAETGSGKT-LA--------------FGIPILT--------GIVNKLEN- 837
+ I G GSGKT +A F I L ++ L+
Sbjct: 151 KNVL---IDGVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK--LYAL--------------- 880
+ D N + + + + + A +K + L L
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 881 --ILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC--------PH-- 928
IL TR QV + L A T + + ++ ++ +L K P
Sbjct: 266 CKILLTTRF--KQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 929 -----ILVATPGRL-------WEFI-QLGHFHLTELYK--INYLVIDETDRMIES-GHFP 972
++ W+ + LT + + +N L E +M + FP
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 973 ELKNI----LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 1028
+I L + V K SL ++K Q K +S I
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVV-----NKLHKYSL-VEK-QPKESTIS-----IPS 430
Query: 1029 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD----EKDSYLYYFILQH 1076
+ L +K L I + K D D Y Y I H
Sbjct: 431 IYLELKVKLENEYALHRSI-VDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Score = 68.3 bits (166), Expect = 2e-11
Identities = 80/524 (15%), Positives = 160/524 (30%), Gaps = 186/524 (35%)
Query: 916 TEKQLR-ILNK--CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE----TDRMIES 968
+ + IL+K HI+++ + + ++ + ++ + + +E
Sbjct: 38 VQDMPKSILSKEEIDHIIMS-KDAV-----------SGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 969 GHFPELKNILDRVTMTETSQP-RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 1027
K ++ + TE QP T ++ ++ K VS+ P
Sbjct: 86 VLRINYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-----VSRLQP-YL 138
Query: 1028 RLQD-LLNIKSPKIVDLTEKIGITKT------LTESKILCKHDEKDSYLYYFILQHPGRT 1080
+L+ LL ++ K V + +G KT K+ CK D K +L
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL----------N 188
Query: 1081 LVFCNSISSV-KRLTQLLTMLKCS-----------PLPLHASMNQRQRLKNLDRFRDQNN 1128
L CNS +V + L +LL + + L +H+ + L+ L + + N
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYEN 245
Query: 1129 SILLATDV----AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+L+ +V A ++ + +I + T R + +T L +
Sbjct: 246 CLLVLLNVQNAKAWNAFNL-------------SCKILL-----TTR--FKQVTDFLSAAT 285
Query: 1185 EIPLYIKMFN-SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHR 1243
+ + + +L DE SL L K +L
Sbjct: 286 TTHISLDHHSMTLTP---------DEV-KSL------LLK----------------YLD- 312
Query: 1244 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1303
++P + N LS+I + I
Sbjct: 313 ----------------CRPQDLPREVLTTNPR--------------RLSIIAESI----- 337
Query: 1304 IEYLESKIKKNRPDNWLEKAAKDMDIIIDD--ENLIQPNQLLIFESRNLRYSWDALILAP 1361
+ DNW + II+ L +P E R + +
Sbjct: 338 ------RDGLATWDNWKHVNCDKLTTIIESSLNVL-EPA-----EYRKM-F--------- 375
Query: 1362 TRELAIQVQN-HILDAGKYTPVKVACVV-GGMSTEKQLRILNKC 1403
L++ + HI P + ++ + + ++NK
Sbjct: 376 -DRLSVFPPSAHI-------PTILLSLIWFDVIKSDVMVVVNKL 411
Score = 61.8 bits (149), Expect = 2e-09
Identities = 117/786 (14%), Positives = 241/786 (30%), Gaps = 265/786 (33%)
Query: 367 TETSQPR---QTMIESGHF-PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 422
ET + + + ++ F + D + + + + S + + + K
Sbjct: 9 FETGEHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKS----ILS---KEEIDHIIMSKD 59
Query: 423 GQSKSKKV-----SKGDPSIKR-LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE- 475
S + ++ SK + +++ ++++L I ++ + ++ + + D
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 476 -KDSYLY--YFILQHPGRTLCEEIQD-LLNIKSPKIVDLTEKIGITKT------LTESKI 525
D+ ++ Y + +++ LL ++ K V + +G KT K+
Sbjct: 120 YNDNQVFAKYNV---SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSV-KRLTQLLTMLKCS-----------PLP 573
CK D K +L L CNS +V + L +LL + + L
Sbjct: 177 QCKMDFKIFWL----------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 574 LHASMNQRQRLKNLDRFRDQNNSILLATDV----AARGLDIPGIEHVIHYHVPRTSEIYI 629
+H+ + L+ L + + N +L+ +V A ++ + +I +
Sbjct: 227 IHSI---QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-------------SCKILL 270
Query: 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDI--NVTV 687
T R + +T D + T ++ + ++ E + + +
Sbjct: 271 -----TTR--FKQVT------DFLSAATTTHISLDHHSMTLTPDE-----VKSLLLKY-L 311
Query: 688 SSKKKKLKR---KQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQT 744
+ + L R NP +S ++ I+ K K
Sbjct: 312 DCRPQDLPREVLTTNP--RRLSIIAE-------------SIRDGLATWDNWKHVNCDK-- 354
Query: 745 YTSANKELLEV-DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL 803
T+ + L V + + MF +++ + F I P+ L
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLS------V------------FPPSAHI-----PTIL 391
Query: 804 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863
L+ ++ + + D V+ +L + S
Sbjct: 392 LS---------------------LI------WFDVIKSDV---------MVVVNKLHKYS 415
Query: 864 ANTTEFVKKTRNK----LYALILAPTRELAIQVQNH--ILDAGKYTPVKVACVVGGMSTE 917
V+K + + ++ L +L + H I+D Y K
Sbjct: 416 L-----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPK----------- 457
Query: 918 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 977
L+ + + +GH HL I+ +RM F +
Sbjct: 458 ------TFDSDDLIPPYLDQYFYSHIGH-HLKN--------IEHPERMTL---FRMV--F 497
Query: 978 LDRVTMTETSQPRQTFVF-SATLTH---------SLKNSLN-LKKGQSKSKKVSKGDPSI 1026
LD F F + H S+ N+L LK + DP
Sbjct: 498 LD-------------FRFLEQKIRHDSTAWNASGSILNTLQQLKF---YKPYICDNDPKY 541
Query: 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 1086
+RL + I+D KI E+ I K+ D L L +F +
Sbjct: 542 ERLVNA-------ILDFLPKIE------ENLICSKY--TD--LLRIALMAEDEA-IFEEA 583
Query: 1087 ISSVKR 1092
V+R
Sbjct: 584 HKQVQR 589
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 76.1 bits (186), Expect = 4e-14
Identities = 75/500 (15%), Positives = 154/500 (30%), Gaps = 68/500 (13%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
+ LA + Q +N + V + G + + + + I+V TP L
Sbjct: 58 VVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQIL- 116
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR------------VTMTET 369
LT L ++ DE + + L + +T +
Sbjct: 117 -VNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTAS 175
Query: 370 SQPRQTMIESGHFPELKNILDR------VTMTETSQPRQTFV-----------------F 406
+ ++ T+ E Q Q F+ F
Sbjct: 176 VGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 235
Query: 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD-----LLNIKSPKIVDLTEKIGIT 461
+A +++ + + L + +S+ Q+ ++ + +++ L +K +
Sbjct: 236 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEES 295
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI------- 514
+ I +H K + + + E+
Sbjct: 296 RICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQE 355
Query: 515 GITKTLTESKILCKHDEKDSYL-----YYFILQHPGRTLVFCNSISSVKRLTQLLTM--- 566
+ + SK + K L + RTL+F + + V L + +
Sbjct: 356 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPI 415
Query: 567 ---LKCSPLPLHAS------MNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHV 616
+K L M + LD F+ ++N +L+AT VA G+DI V
Sbjct: 416 LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV 475
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEAD 676
+ Y I GR RA +V +++ + + +EE N+ E+ +
Sbjct: 476 VLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKW 534
Query: 677 KEKTEDINVTVSSKKKKLKR 696
E+T + K+++ R
Sbjct: 535 DEETFAKKIHNLQMKERVLR 554
Score = 69.2 bits (168), Expect = 5e-12
Identities = 46/298 (15%), Positives = 93/298 (31%), Gaps = 23/298 (7%)
Query: 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETD-RMIESGHFPELK 975
+ L L+ T + Q +++V+ + R+++ E
Sbjct: 236 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEES 295
Query: 976 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 1035
I + + + + + ++L+ + K + L
Sbjct: 296 RICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQE 355
Query: 1036 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 1095
K P+++ L++ E + RTL+F + + V L +
Sbjct: 356 KEPELIALSKDETNENPKLEEL-------VCILDDAYRYNPQTRTLLFAKTRALVSALKK 408
Query: 1096 LLTM------LKCSPLPLHAS------MNQRQRLKNLDRFRD-QNNSILLATDVAARGLD 1142
+ +K L M + LD F+ ++N +L+AT VA G+D
Sbjct: 409 CMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 468
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
I V+ Y I GR RA +++ E+ K E+ +
Sbjct: 469 IVQCNLVVLYEYSGNVTKMIQVRGR-GRAAG-SKCILVTSKTEVVENEKCNRYKEEMM 524
Score = 32.2 bits (72), Expect = 1.5
Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 2/129 (1%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
+ LA + Q +N + V + G + + + + I+V TP L
Sbjct: 58 VVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQIL- 116
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
LT L ++ DE + + L SQ Q +A+
Sbjct: 117 -VNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTAS 175
Query: 999 LTHSLKNSL 1007
+ ++
Sbjct: 176 VGVGNAKNI 184
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 76.6 bits (187), Expect = 5e-14
Identities = 96/667 (14%), Positives = 186/667 (27%), Gaps = 121/667 (18%)
Query: 103 NKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMA-EWVKFNIPET 161
+ T ++ E + K T A+++ LE + +E+ + E
Sbjct: 177 DTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEG 236
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
I + K Q + A+ + ++ A TGSGKT + IL + +N
Sbjct: 237 IGKPPPVYETKKARSYQIELAQPAINGKNALI-CAPTGSGKTF---VSILI-CEHHFQN- 290
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
K + LA + Q +N
Sbjct: 291 --------------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKH 318
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341
+ V + G + + + + I+V TP L LT L ++
Sbjct: 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQIL--VNSFEDGTLTSLSIFTLMI 376
Query: 342 IDETDRMIESG-------------------------------------------HFPELK 358
DE + H L
Sbjct: 377 FDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLC 436
Query: 359 NILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET----------------SQPRQ 402
+ LD ++ + Q + + PE+ L + +
Sbjct: 437 SYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYS 496
Query: 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
S +K K + + + K
Sbjct: 497 VDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
++E + + + + P L + + K P+++ L++
Sbjct: 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDET----NEN 612
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM------LKCSPLPLHA 576
K+ + RTL+F + + V L + + +K L
Sbjct: 613 PKLEEL---VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRG 669
Query: 577 S------MNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
M + LD F+ ++N +L+AT VA G+DI V+ Y I
Sbjct: 670 RRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMI 729
Query: 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSS 689
GR RA +V +++ + + +EE N+ E+ + E+T +
Sbjct: 730 QVRGR-GRAAGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQ 788
Query: 690 KKKKLKR 696
K+++ R
Sbjct: 789 MKERVLR 795
Score = 65.0 bits (157), Expect = 2e-10
Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 36/244 (14%)
Query: 970 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 1029
L+ D + ++E ++ + ++KN + Q + K + +P + L
Sbjct: 545 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIAL 604
Query: 1030 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 1089
++PK+ +L + + RTL+F + +
Sbjct: 605 SKDETNENPKLEELVCIL---------------------DDAYRYNPQTRTLLFAKTRAL 643
Query: 1090 VKRLTQLLTM------LKCSPLPLHAS------MNQRQRLKNLDRFRD-QNNSILLATDV 1136
V L + + +K L M + LD F+ ++N +L+AT V
Sbjct: 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV 703
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A G+DI V+ Y I GR RA +++ E+ K
Sbjct: 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAG-SKCILVTSKTEVVENEKCNRYK 761
Query: 1197 EKKV 1200
E+ +
Sbjct: 762 EEMM 765
Score = 37.7 bits (86), Expect = 0.034
Identities = 46/301 (15%), Positives = 90/301 (29%), Gaps = 43/301 (14%)
Query: 720 NKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMA-EWVKFNIPET 778
+ T ++ E + K T A+++ LE + +E+ + E
Sbjct: 177 DTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEG 236
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
I + K Q + A+ + ++ A TGSGKT + IL + +N
Sbjct: 237 IGKPPPVYETKKARSYQIELAQPAINGKNALI-CAPTGSGKTF---VSILI-CEHHFQN- 290
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
K + LA + Q +N
Sbjct: 291 --------------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKH 318
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958
+ V + G + + + + I+V TP L LT L ++
Sbjct: 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQIL--VNSFEDGTLTSLSIFTLMI 376
Query: 959 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
DE G+ P + + S + + T + + N+ N+++
Sbjct: 377 FDECHNTT--GNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICS 434
Query: 1019 V 1019
+
Sbjct: 435 L 435
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 73.8 bits (180), Expect = 3e-13
Identities = 103/678 (15%), Positives = 201/678 (29%), Gaps = 118/678 (17%)
Query: 103 NKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMA-EWVKFNIPET 161
+ T ++ E + K T A+++ LE + +E+ + E
Sbjct: 177 DTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEG 236
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
I + K Q + A+ + ++ A TGSGKT + IL + +N
Sbjct: 237 IGKPPPVYETKKARSYQIELAQPAINGKNALI-CAPTGSGKTF---VSILI-CEHHFQN- 290
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
K + LA + Q +N
Sbjct: 291 --------------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKH 318
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341
+ V + G + + + + I+V TP L LT L ++
Sbjct: 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQIL--VNSFEDGTLTSLSIFTLMI 376
Query: 342 IDETDRMI-ESGHFPELKNILDRVTMTETSQPRQTMIESGHFP----------------- 383
DE + + L++ + + P+ + +
Sbjct: 377 FDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLC 436
Query: 384 ELKNILDRVTMTETS-----------------QPRQTFVFSATLTHSLKNSLNLKKGQSK 426
+I T+ E + R F+A +++ + + L + +
Sbjct: 437 SYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAY 496
Query: 427 SKKVSKGDPSIKRLQD-----LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 481
+S+ Q+ ++ + +++ L +K ++ I +H K +
Sbjct: 497 VDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556
Query: 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI-------GITKTLTESKILCKHDEKDS 534
+ + E+ + + SK + K
Sbjct: 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLE 616
Query: 535 YLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTM------LKCSPLPLHAS------ 577
L + RTL+F + + V L + + +K L
Sbjct: 617 ELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTG 676
Query: 578 MNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 636
M + LD F+ ++N +L+AT VA G+DI V+ Y I GR
Sbjct: 677 MTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G 735
Query: 637 RANNEGLTVVLIESDEIPLKTKFNLQEEE----------NNEEEERAEADKEKTEDINVT 686
RA +++ E+ K N +EE +EE A+ V
Sbjct: 736 RAAG-SKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVL 794
Query: 687 VSSKKKKLKRKQNPSQVE 704
S++K++K K Q
Sbjct: 795 RDSRRKEIKPKVVEGQKN 812
Score = 63.8 bits (154), Expect = 4e-10
Identities = 47/282 (16%), Positives = 94/282 (33%), Gaps = 36/282 (12%)
Query: 970 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 1029
L+ D + ++E ++ + ++KN + Q + K + +P + L
Sbjct: 545 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIAL 604
Query: 1030 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 1089
++PK+ +L + + RTL+F + +
Sbjct: 605 SKDETNENPKLEELVCIL---------------------DDAYRYNPQTRTLLFAKTRAL 643
Query: 1090 VKRLTQLLTM------LKCSPLPLHAS------MNQRQRLKNLDRFRD-QNNSILLATDV 1136
V L + + +K L M + LD F+ ++N +L+AT V
Sbjct: 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV 703
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A G+DI V+ Y I GR RA +++ E+ K
Sbjct: 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAG-SKCILVTSKTEVVENEKCNRYK 761
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD 1238
E+ ++ I + K+I + E + ++
Sbjct: 762 EEMMNKAVEKIQKWDEETFAKKIHNLQMKERVLRDSRRKEIK 803
Score = 36.1 bits (82), Expect = 0.10
Identities = 51/354 (14%), Positives = 108/354 (30%), Gaps = 56/354 (15%)
Query: 668 EEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQS 727
E EE + + +++ +T + K++ + L + T ++
Sbjct: 136 ECEEIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQLAL-----------DTTGYYRA 184
Query: 728 DEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMA-EWVKFNIPETIIRALYQK 786
E + K T A+++ LE + +E+ + E I +
Sbjct: 185 SELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVY 244
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
K Q + A+ + ++ A TGSGKT + IL + +N
Sbjct: 245 ETKKARSYQIELAQPAINGKNALI-CAPTGSGKTF---VSILI-CEHHFQN--------- 290
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
K + LA + Q +N +
Sbjct: 291 ------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966
V + G + + + + I+V TP L LT L ++ DE
Sbjct: 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQIL--VNSFEDGTLTSLSIFTLMIFDECHNTT 384
Query: 967 -ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 1019
+ + L++ + + P+ + T + + N+ N+++ +
Sbjct: 385 GNHPYNVLMTRYLEQKFNSASQLPQ---ILGLTASVGVGNAKNIEETIEHICSL 435
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 71.8 bits (175), Expect = 9e-13
Identities = 65/476 (13%), Positives = 142/476 (29%), Gaps = 71/476 (14%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
+ A + Q + +A + G S ++ + + I++ TP L
Sbjct: 55 VVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILV 114
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESG-HFPELKNILDR------------VTMTE 368
+ + + L ++ DE ++ + + LD V +T
Sbjct: 115 NNLN--NGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTA 172
Query: 369 TSQPRQTMIESGHFPELKNILDR---------------------------VTMTETSQPR 401
+ + + + +
Sbjct: 173 SVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNT 232
Query: 402 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN--IKSPKIVDLTEKIG 459
+ S + + K + ++ + K ++ + ++ + + K+ + + +K
Sbjct: 233 FKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEE 292
Query: 460 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKT 519
++ + H K + ++ + D TE+ +
Sbjct: 293 ESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRF 352
Query: 520 LTESKILCKHDEKDSYL------------YYFILQHPGRTLVFCNSISSVKRLTQLLTM- 566
+ + L K S + L+ +T++F + + V L + +
Sbjct: 353 EEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEEN 412
Query: 567 -----LKCSPL------PLHASMNQRQRLKNLDRFRDQNNS-ILLATDVAARGLDIPGIE 614
LK L M + L+ FR ++ IL+AT VA G+DI
Sbjct: 413 PALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECN 472
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEE 670
VI Y I GR RA + +L S ++ K K N+ +E+ E
Sbjct: 473 LVILYEYVGNVIKMIQTRGR-GRARD-SKCFLLTSSADVIEKEKANMIKEKIMNES 526
Score = 59.9 bits (144), Expect = 5e-09
Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 36/242 (14%)
Query: 970 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 1029
+ L+ D + ++E +Q + H ++ + + + +++ + ++++
Sbjct: 303 YTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKV 362
Query: 1030 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 1089
+ ++PK+ DL + + L+ +T++F + +
Sbjct: 363 SRDPSNENPKLRDLYLVL---------------------QEEYHLKPETKTILFVKTRAL 401
Query: 1090 VKRLTQLLTM------LKCSPL------PLHASMNQRQRLKNLDRFRDQNNS-ILLATDV 1136
V L + + LK L M + L+ FR ++ IL+AT V
Sbjct: 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSV 461
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A G+DI VI Y I GR RA + +L S ++ K
Sbjct: 462 ADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARD-SKCFLLTSSADVIEKEKANMIK 519
Query: 1197 EK 1198
EK
Sbjct: 520 EK 521
Score = 39.1 bits (90), Expect = 0.012
Identities = 39/358 (10%), Positives = 102/358 (28%), Gaps = 39/358 (10%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
+ A + Q + +A + G S ++ + + I++ TP L
Sbjct: 55 VVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILV 114
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
+ + + L ++ DE ++ I+ R + + R
Sbjct: 115 NNLN--NGAIPSLSVFTLMIFDECHNTSKN---HPYNQIMFRYLDHKLGESRDPLPQVVG 169
Query: 999 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 1058
LT S+ G +K + I +L L+ I
Sbjct: 170 LTASV--------GVGDAKTAEEAMQHICKLCAALDASV-----------IATVRDNVAE 210
Query: 1059 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
L + K + + T ++QL+ + + + + +++
Sbjct: 211 LEQVVYKPQKISRKVASRTSNTFKCI--------ISQLMKETEKLAKDVSEELGKLFQIQ 262
Query: 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178
N + + ++ A + R + + + N+ +
Sbjct: 263 NREFGTQKYEQWIVGVHKACSVF-----QMADKEEESRVCKALFLYTSHLRKYNDALIIS 317
Query: 1179 VLIESDEIPLYIKMF--NSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK 1234
+ + Y+K F + E D + + +++ +++ K++
Sbjct: 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRD 375
Score = 32.6 bits (73), Expect = 1.0
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
+ A + Q + +A + G S ++ + + I++ TP
Sbjct: 55 VVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTP 110
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.0 bits (176), Expect = 2e-12
Identities = 99/628 (15%), Positives = 180/628 (28%), Gaps = 237/628 (37%)
Query: 707 ELSANTNDPDDQVNKTEEIQSDEPHSK-KLKQK------KKKKQTYTSANKELLEVDTSN 759
+ + +P + DEP + +L K + + ++L + +
Sbjct: 36 QFNKILPEPTE-----GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 760 NEDMF----------VQMAEWVKFNIPET--IIRALYQKGFKTPTKIQSMVMPSALLARK 807
E+ + ++ + + +T +I+ SAL
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS-NSALFR-- 147
Query: 808 DIVGAAETGSGKTLA-FGIPILTGIVNKLENPTEE--DENDSGLEE-------------- 850
A G+ + +A FG G + T++ +E L +
Sbjct: 148 ----AVGEGNAQLVAIFG-----G-----QGNTDDYFEE----LRDLYQTYHVLVGDLIK 189
Query: 851 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE-----LA--------IQV-Q-NH 895
+ E L EL + + + + N + + P+ L I V Q H
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 896 ILDAGK---YTPVKVACVVGGMSTEKQLRILNKCPHILVAT---PGRLWE-FIQLGH--- 945
+ K +TP ++ + G + Q ++ A WE F
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQ--------GLVTAVAIAETDSWESFFVSVRKAI 300
Query: 946 ---FHL----TELYKINYLVIDETDRMIESGH-FP---------ELKNILDRVTMTETSQ 988
F + E Y L + +E+ P + + D V T +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 989 P--RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKRLQDLL-NIKSPKIVDLT 1044
P +Q + SL N +K+ VS G P S+ L L K+P +D
Sbjct: 361 PAGKQVEI-------SLVNG-------AKNLVVS-GPPQSLYGLNLTLRKAKAPSGLD-- 403
Query: 1045 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS---ISSVKRLTQLLTMLK 1101
+S+I E R L F N ++S
Sbjct: 404 ----------QSRI--PFSE--------------RKLKFSNRFLPVAS------------ 425
Query: 1102 CSPLPLHAS-MNQRQRLKNLDRFRDQNNSILLATDVAARG--LDIPGIEHVIHYHVPRTS 1158
P H+ + L N D L+ +V+ + IP V Y
Sbjct: 426 ----PFHSHLLVPASDLINKD---------LVKNNVSFNAKDIQIP----V--YDT---- 462
Query: 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP-----------DF-P 1206
G R + ++ ++ D I + V DF P
Sbjct: 463 -----FDGSDLRVLSGSISERIV--DCI---------IRLPVKWETTTQFKATHILDFGP 506
Query: 1207 IDESVLS-LIKK-------RIDLAKSIE 1226
S L L + R+ +A +++
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Score = 68.5 bits (167), Expect = 2e-11
Identities = 59/309 (19%), Positives = 101/309 (32%), Gaps = 95/309 (30%)
Query: 794 IQS--MVM------PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED--- 842
Q M M +A +D+ A+ T F I IV + NP
Sbjct: 1626 SQEQGMGMDLYKTSKAA----QDVWNRADNHFKDTYGFSI---LDIV--INNPVNLTIHF 1676
Query: 843 ---------ENDSGLEEE--------AEEVLEELEEESANTT-----EFVKKTRNK---L 877
EN S + E E++ +E+ E S + T + T+ L
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 878 YALILAPTREL----AIQVQN----HILDAGKYTPVKVA--CVVGGMSTEKQLRILNKCP 927
+ A +L I H L G+Y A + MS E +
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSL--GEYA----ALASLADVMSIESLVE------ 1784
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVID-ETDRMIESGHFPELKNILDRVTMTET 986
+V G + EL + NY +I R+ S L+ +++RV T
Sbjct: 1785 --VVFYRGMTMQVAVPRD----ELGRSNYGMIAINPGRVAASFSQEALQYVVERVG-KRT 1837
Query: 987 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS-IKRLQDLLN---IKSPKIVD 1042
V N N++ Q V+ GD + + ++LN ++ I++
Sbjct: 1838 GW----LVEIV-------N-YNVENQQY----VAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Query: 1043 LTEKIGITK 1051
L + + + +
Sbjct: 1882 LQKSLSLEE 1890
Score = 68.2 bits (166), Expect = 2e-11
Identities = 79/521 (15%), Positives = 151/521 (28%), Gaps = 174/521 (33%)
Query: 90 ELSANTNDPDDQVNKTEEIQSDEPSSK-KLKQK------KKKKQTYTSANKELLEVDTSN 142
+ + +P + DEP++ +L K + + ++L + +
Sbjct: 36 QFNKILPEPTE-----GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 143 NEDMF----------VQMAEWVKFNIPET--IIRALYQKGFKTPTKIQSMVMPSALLARK 190
E+ + ++ + + +T +I+ SAL
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS-NSALFR-- 147
Query: 191 DIVGAAETGSGKTLA-FGIPILTGIVNKLENPTEE--DENDSGLEE-------------- 233
A G+ + +A FG G + T++ +E L +
Sbjct: 148 ----AVGEGNAQLVAIFG-----G-----QGNTDDYFEE----LRDLYQTYHVLVGDLIK 189
Query: 234 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE-----LA--------IQV-Q-NH 278
+ E L EL + + + + N + + P+ L I V Q H
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 279 ILDAGK---YTPVKVACVVGGMSTEKQLRILNKCPHILVAT---PGRLWE-FIQLGH--- 328
+ K +TP ++ + G + Q ++ A WE F
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQ--------GLVTAVAIAETDSWESFFVSVRKAI 300
Query: 329 ---FHL----TELYKINYLVIDETDRMIESGH-FP---------ELKNILDRVTMTETSQ 371
F + E Y L + +E+ P + + D V T +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 372 PRQTMIE-SGHFPELKNILDRVTMTETSQPRQTFVFS---ATLTHSLKNSL-NLK----K 422
P +E S L N + V S +L + L +L K
Sbjct: 361 PAGKQVEIS-----LVN-----------GAKN-LVVSGPPQSL-YGLNLTLRKAKAPSGL 402
Query: 423 GQSK---SKKVSKGDPSIKRLQDLLNIK----SPKIVDLTEKIGITKTLTESKILCKHDE 475
QS+ S++ K L + S +V ++ I K L ++ + +
Sbjct: 403 DQSRIPFSERKLKFSNR------FLPVASPFHSHLLVPASDL--INKDLVKNNVSFNAKD 454
Query: 476 KDSYLYYFILQHP------GRTLCEEIQDLLNIKSPKIVDL 510
+Q P G L + +IVD
Sbjct: 455 ---------IQIPVYDTFDGSDLRVLSGSIS----ERIVDC 482
Score = 62.8 bits (152), Expect = 9e-10
Identities = 61/320 (19%), Positives = 101/320 (31%), Gaps = 102/320 (31%)
Query: 177 IQS--MVM------PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED--- 225
Q M M +A +D+ A+ T F I IV + NP
Sbjct: 1626 SQEQGMGMDLYKTSKAA----QDVWNRADNHFKDTYGFSI---LDIV--INNPVNLTIHF 1676
Query: 226 ---------ENDSGLEEE--------AEEVLEELEEESANTT-----EFVKKTRNK---L 260
EN S + E E++ +E+ E S + T + T+ L
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 261 YALILAPTREL----AIQVQN----HILDAGKYTPVKVA--CVVGGMSTEKQLRILNKCP 310
+ A +L I H L G+Y A + MS E +
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSL--GEYA----ALASLADVMSIESLVE------ 1784
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVID-ETDRMIESGHFPELKNILDRVTMTET 369
+V G + EL + NY +I R+ S L+ +++RV
Sbjct: 1785 --VVFYRGMTMQVAVPRD----ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK--- 1835
Query: 370 SQPRQTMIESGHFPEL--KNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQS 425
+G E+ N+ Q +V + L ++ N LN K Q
Sbjct: 1836 --------RTGWLVEIVNYNV-----------ENQQYVAAGDLRALDTVTNVLNFIKLQK 1876
Query: 426 -KSKKVSKGDPSIKRLQDLL 444
++ K S++ ++ L
Sbjct: 1877 IDIIELQK-SLSLEEVEGHL 1895
Score = 60.1 bits (145), Expect = 6e-09
Identities = 108/591 (18%), Positives = 187/591 (31%), Gaps = 194/591 (32%)
Query: 950 ELYKINYL--VIDETDRMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006
EL +L V + + G F + L L ++ + H+L
Sbjct: 59 ELV-GKFLGYVSSLVEPS-KVGQFDQVLNLCLTEFE--------NCYLEGNDI-HALAAK 107
Query: 1007 L--NLKKGQSKSKKVSKGDPSIK---RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061
L K+K++ IK + + K + S +
Sbjct: 108 LLQENDTTLVKTKEL------IKNYITARIMAKRPFDKK-------------SNSALFRA 148
Query: 1062 HDEKDSYLY-----------YF----ILQHPGRTLV--FCNSISSVKRLTQLL-TMLKCS 1103
E ++ L YF L LV + + L++L+ T L
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA--ETLSELIRTTLDAE 206
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV--IHYHV------- 1154
+ +N + L+N D+ LL+ ++ P I + HY V
Sbjct: 207 KV-FTQGLNILEWLENPSNTPDK--DYLLSIPIS-----CPLIGVIQLAHYVVTAKLLGF 258
Query: 1155 -PRTSEIYIHRSGRTARANNEGL-TLVLI-ESDEIP-LYIKMFNSLEKKVDLPDFPIDES 1210
P E+ + G T + +GL T V I E+D ++ + ++
Sbjct: 259 TP--GELRSYLKGATGHS--QGLVTAVAIAETDSWESFFVSVRKAIT------------- 301
Query: 1211 VLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEG-----LTLVLIESDEI 1265
VL I R A L I + + NNEG L++ + +++
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILE------------DSLENNEGVPSPMLSISNLTQEQV 349
Query: 1266 PLYIKMFNSLEKKVDLPDFPIDESV-LSLI--KKRIDLA---KSIEYLESKIKKNRPDNW 1319
Y+ NS P + V +SL+ K + ++ +S+ L ++K
Sbjct: 350 QDYVNKTNS--------HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK------ 395
Query: 1320 LEKAAKDMDIIIDDENLIQ---PNQLLIFESRNLRYSWDAL---------ILAPTRELAI 1367
KA +D Q P F R L++S L +L P +L
Sbjct: 396 -AKAPSGLD---------QSRIP-----FSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 1368 Q--VQNHILDAGKY--TPV------KVACVVGGMSTEKQLR-ILNKC-----------PH 1405
+ V+N++ K PV V+ G +E+ + I+ H
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 1406 ILVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEK-AAKDMDIIIDDE 1455
IL PG S + L + K + A +DI DD+
Sbjct: 501 ILDFGPGGAS--------GLGVLTHRNKDGT---GVRVIVAGTLDINPDDD 540
Score = 58.1 bits (140), Expect = 3e-08
Identities = 93/650 (14%), Positives = 181/650 (27%), Gaps = 249/650 (38%)
Query: 312 ILVATPGRLWEFIQLGHFHLTELYKI----------NYLVIDETDRMIE-SGHFPELKNI 360
+LV P + F ++L + + DE E G F L +
Sbjct: 20 LLV--PTASF-------FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF--LGYV 68
Query: 361 LDRVTMTETSQPRQTMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL- 418
V E S + G F + L L ++ + H+L L
Sbjct: 69 SSLV---EPS-------KVGQFDQVLNLCLTEFE--------NCYLEGNDI-HALAAKLL 109
Query: 419 -NLKKGQSKSKKVSKGDPSIK---RLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 474
K+K++ IK + + K + S +
Sbjct: 110 QENDTTLVKTKEL------IKNYITARIMAKRPFDKK-------------SNSALFRAVG 150
Query: 475 EKDSYLY-----------YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTES 523
E ++ L YF EE++DL + DL + +TL+E
Sbjct: 151 EGNAQLVAIFGGQGNTDDYF----------EELRDLYQTYHVLVGDLIKFSA--ETLSE- 197
Query: 524 KILCKHDEKDSYLYY----FI--LQHPGRT---------LVFCNSISSVKRLTQL----- 563
L + ++ + L++P T + C I + QL
Sbjct: 198 --LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG----VIQLAHYVV 251
Query: 564 -LTMLKCSPLPLHASM---------------------------NQRQRLKNL-------- 587
+L +P L + + + R+ + L
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 588 DRFRDQNNSILLATD------------VAARGLDIPGIEHVIHY---HVPRTSEIYIHRS 632
+ + + + + D ++ L ++ ++ H+P ++ I
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI--- 368
Query: 633 GRTARANNEGLTVV--LIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSK 690
+ N VV +S L NL + +A + ++ S+
Sbjct: 369 ---SLVNGAKNLVVSGPPQS----LYG-LNLT-----LRKAKAPSGLDQ---------SR 406
Query: 691 KKKLKRKQNPSQV--EVSELSANTNDPDDQVNKTEEIQSDEP-HSKKLKQKKKK------ 741
+RK S V+ P HS L
Sbjct: 407 IPFSERKLKFSNRFLPVA----------------------SPFHSHLLVPASDLINKDLV 444
Query: 742 KQTYTSANKEL-LEV-DTSNNEDMFVQMAEWVKFNIPETIIRALYQK-------GFKTPT 792
K + K++ + V DT + D+ + +I E I+ + + T
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDL-----RVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 793 KIQSMVM-PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841
I + P + + G+G + I+ G ++ NP ++
Sbjct: 500 HI--LDFGPGGASGLGVLTHRNKDGTGVRV-----IVAGTLDI--NPDDD 540
Score = 52.7 bits (126), Expect = 9e-07
Identities = 85/501 (16%), Positives = 152/501 (30%), Gaps = 189/501 (37%)
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
L H S+ LL P +Q L+ ++F +
Sbjct: 9 LTLSHG--------SLE-----HVLLV-----PTASFFIASQ---LQ--EQFNK---ILP 42
Query: 1132 LATDVAARGLDIPG--IEHVIHY--HVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187
T+ A D P E V + +V +S + + G+ ++ L L L E
Sbjct: 43 EPTEGFAAD-DEPTTPAELVGKFLGYV--SSLVEPSKVGQF----DQVLNLCLTE----- 90
Query: 1188 LYIKMFNS--LEKKVDLPDF--PIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHR 1243
F + LE D+ + + + + K +L K+ Y+ ++I RP +
Sbjct: 91 -----FENCYLEGN-DIHALAAKLLQENDTTLVKTKELIKN--YITARIMAKRPFDKKSN 142
Query: 1244 SG--RTARANNEGLTLVL-----IES--DEI-PLYIKMFNSLEKKVDLPDFPIDESVLSL 1293
S R N L + + +E+ LY + ++ L DL F E++ L
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY-QTYHVLVG--DLIKF-SAETLSEL 198
Query: 1294 IKKRIDLAKS-------IEYLESKIKKNRPD-NWLEKAAKDMDIIIDDENLIQPNQLLIF 1345
I+ +D K +E+LE+ N PD ++L +I +IQ ++
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLEN--PSNTPDKDYLLSIPISCPLI----GVIQLAHYVVT 252
Query: 1346 ESRNLRY-----------------------------SWDAL---------IL-------- 1359
++ L + SW++ +L
Sbjct: 253 -AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 1360 --APTRELAIQVQNHILDAGKYTPVKVAC--VVGGMST---EKQLRILNKC-P-----HI 1406
P L + L+ + P + + ++ + + N P I
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVP---SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 1407 -LVATP------G-ALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLI 1458
LV G SL L ++K KA +D
Sbjct: 369 SLVNGAKNLVVSGPPQSLYG---------LNLTLRK-------AKAPSGLD--------- 403
Query: 1459 QPKANSRENALMSKALVSKRK 1479
Q S+ S+RK
Sbjct: 404 Q-----------SRIPFSERK 413
Score = 40.0 bits (93), Expect = 0.007
Identities = 41/267 (15%), Positives = 77/267 (28%), Gaps = 91/267 (34%)
Query: 530 DEKDSYL---YYF----ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+ D++ Y F I+ + L KR+ + + + + + +
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET-IVDGKLKTEK 1705
Query: 583 RLKNLDR------FRDQNNSI---------LLATDVAA------RGLDIPGIEHVI-HYH 620
K ++ FR + + L + AA +GL IP H
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL-IPADATFAGH-- 1762
Query: 621 VPRTS--EIYIHRSGRTARANNEGLTVVL-IESDEIPL-----KTKFNLQEEENNEEEER 672
S E Y + + A+ V+ IE + + T +Q +E R
Sbjct: 1763 ----SLGE-Y---AALASLAD------VMSIE-SLVEVVFYRGMT---MQVAVPRDELGR 1804
Query: 673 --------------AEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQ 718
A +E + + V + L VE+ N N + Q
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL--------VEI----VNYNVENQQ 1852
Query: 719 V---NKTEEIQSDEPHSKKLKQKKKKK 742
+ + + L K +K
Sbjct: 1853 YVAAGDLRAL---DTVTNVLNFIKLQK 1876
Score = 38.5 bits (89), Expect = 0.020
Identities = 53/287 (18%), Positives = 83/287 (28%), Gaps = 118/287 (41%)
Query: 86 VEVSELSANTNDPDDQVNKTEEIQSDEPSS----KKLKQKKKKKQTYTSANKEL-----L 136
V E NT+ P + + E PS L Q++ + N L +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV-NKTNSHLPAGKQV 366
Query: 137 EVDTSNNEDMFVQMAEWVKFNI---PETIIRALY------QKGFKTPTKIQSMV------ 181
E+ N V + P ++LY +K QS +
Sbjct: 367 EISLVNGAKNLV---------VSGPP----QSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 182 -------MP------SALLA------RKDIVGAAETGSGKTLAFGIPIL-TGIVNKLENP 221
+P S LL KD+V + + K + IP+ T
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ--IPVYDT--------- 462
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR-ELAIQVQ-NHI 279
D +D L + + E + + +I P + E Q + HI
Sbjct: 463 --FDGSD--LRVLSGSISERI-----------------VDCIIRLPVKWETTTQFKATHI 501
Query: 280 LDAGKYTPVKVACVVGGMS-----TEKQL-----RILNKCPHILVAT 316
LD G P GG S T + R+ I+ T
Sbjct: 502 LDFG---P-------GGASGLGVLTHRNKDGTGVRV------IVAGT 532
Score = 35.4 bits (81), Expect = 0.17
Identities = 49/310 (15%), Positives = 97/310 (31%), Gaps = 99/310 (31%)
Query: 1131 LLATDVAAR--------------GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
L T AA+ G I I VI+ P + IH G + E
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDI--VINN--PV--NLTIHFGGEKGKRIRENY 1688
Query: 1177 TLVLIES--DEIPLYIKMFNSLEKKVDLPDFPIDESVLSL-------IKKRIDLAKSI-- 1225
+ ++ E+ D K+F + + F ++ +LS +
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL-----TLMEKAA 1743
Query: 1226 -EYLESKIKKNRPDNWL---HRS-GR-TARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1279
E L+SK P + H S G A L + +D + +
Sbjct: 1744 FEDLKSK--GLIPADATFAGH-SLGEYAA--------LASL-ADVMSI------------ 1779
Query: 1280 DLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKD---MDIIIDDENL 1336
ES++ ++ R +++ + + R + + A + + E L
Sbjct: 1780 --------ESLVEVVFYR---GMTMQVAVPRDELGRSNYGM--IAINPGRVAASFSQEAL 1826
Query: 1337 I--------QPNQLL-I--FESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVA 1385
+ L+ I + N +Y + A A+ ++L+ K + +
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQY-----VAAGDLR-ALDTVTNVLNFIKLQKIDII 1880
Query: 1386 CVVGGMSTEK 1395
+ +S E+
Sbjct: 1881 ELQKSLSLEE 1890
Score = 32.3 bits (73), Expect = 1.8
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 30/89 (33%)
Query: 41 PNLQEAENNEEEVEE-AEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPD 99
P A ++E ++ E ++T + VE+ N N +
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWL-------------------VEI----VNYNVEN 1850
Query: 100 DQV---NKTEEIQSDEPSSKKLKQKKKKK 125
Q + + + L K +K
Sbjct: 1851 QQYVAAGDLRAL---DTVTNVLNFIKLQK 1876
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 69.6 bits (169), Expect = 6e-12
Identities = 79/575 (13%), Positives = 171/575 (29%), Gaps = 97/575 (16%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
+ A + Q ++ + +V + G + + + + I++ TP L
Sbjct: 64 VVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 123
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMI-------------------ESGHFPELKNILD 362
++ + L ++ DE SG P++ +
Sbjct: 124 NNLK--KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 181
Query: 363 RVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL---------THS 413
V + + + + + T+ + + V+ +
Sbjct: 182 SVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241
Query: 414 LKNSLN--LKKGQSKSKKVSKGDPSIKRLQD------------LLNIKSPKIVDLTEKIG 459
K + ++ +S +K++ K ++ ++Q+ + K+ + + +K
Sbjct: 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE 301
Query: 460 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKT 519
++ + H K + + + ++D + D E+ +
Sbjct: 302 ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRF 361
Query: 520 LTESKILCKHDEKDSYLY------------YFILQHPGRTLVFCNSISSVKRLTQLLTM- 566
+ + L S + L T++F + + V L +
Sbjct: 362 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 421
Query: 567 -----LKCSPL------PLHASMNQRQRLKNLDRFRDQNNS-ILLATDVAARGLDIPGIE 614
LK L + M + LD F+ + IL+AT VA G+DI
Sbjct: 422 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAE 674
VI Y I GR RA +L E+E+
Sbjct: 482 LVILYEYVGNVIKMIQTRGR-GRARG-SKCFLLT--------------SNAGVIEKEQIN 525
Query: 675 ADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQ---SDEPH 731
KEK + R Q + E + + + ++E D+ +
Sbjct: 526 MYKEK---------MMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKEN 576
Query: 732 SKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQ 766
K L +K K YT+ + + + + D F +
Sbjct: 577 KKLLCRKCKALACYTADVRVIEDCHYTVLGDAFKE 611
Score = 58.1 bits (139), Expect = 2e-08
Identities = 41/216 (18%), Positives = 72/216 (33%), Gaps = 26/216 (12%)
Query: 1000 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT--KTLTESK 1057
+K++L+ K + + + D + L K ++ ++ K
Sbjct: 328 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 387
Query: 1058 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM------LKCSPL------ 1105
IL + + L T++F + + V L + LK L
Sbjct: 388 ILQEE---------YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 438
Query: 1106 PLHASMNQRQRLKNLDRFRDQNNS-ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
+ M + LD F+ + IL+AT VA G+DI VI Y I
Sbjct: 439 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 498
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
GR RA +L + + ++ EK +
Sbjct: 499 RGR-GRARG-SKCFLLTSNAGVIEKEQINMYKEKMM 532
Score = 33.8 bits (76), Expect = 0.49
Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 13/158 (8%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 938
+ A + Q ++ + +V + G + + + + I++ TP L
Sbjct: 64 VVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 123
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
++ + L ++ DE I+ +
Sbjct: 124 NNLK--KGTIPSLSIFTLMIFDECHNTS---KQHPYNMIMFNYLDQKLGGSSGPLPQVIG 178
Query: 999 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 1036
LT S+ G +K + I +L L+
Sbjct: 179 LTASV--------GVGDAKTTDEALDYICKLCASLDAS 208
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 64.3 bits (156), Expect = 2e-10
Identities = 46/313 (14%), Positives = 82/313 (26%), Gaps = 93/313 (29%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK-QLRILNKCPHILVATPGRLW 938
L+L P+ + G Y ++ G + +R + + +T G+
Sbjct: 261 LVLNPSVAATLGF-------GAY----MSKAHGIDPNIRTGVRTITTGAPVTYSTYGKF- 308
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ-PRQTFVFSA 997
+ ++ DE H + IL T+ + ++ V A
Sbjct: 309 -LAD----GGCSGGAYDIIICDE-------CHSTDSTTILGIGTVLDQAETAGARLVVLA 356
Query: 998 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 1057
T T P NI+ E
Sbjct: 357 TAT-----------------------PPGSVTVPHPNIEEV----------ALSNTGEIP 383
Query: 1058 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 1117
K ++ GR L+FC+S L L+ L + + + ++
Sbjct: 384 FYGKAIPIEAI-------RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIP 436
Query: 1118 KNLDRFRDQNNSILLATDVAARGL--DI-----PG--IEHVIHYHVPRTSEI-------- 1160
D ++ATD G D + + + + T I
Sbjct: 437 TIGDVV-------VVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQD 489
Query: 1161 ---YIHRSGRTAR 1170
R GRT R
Sbjct: 490 AVSRSQRRGRTGR 502
Score = 51.9 bits (124), Expect = 1e-06
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 27/115 (23%)
Query: 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 602
GR L+FC+S L L+ L + + + ++ D ++ATD
Sbjct: 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVV-------VVATD 447
Query: 603 VAARGL--DI-----PG--IEHVIHYHVPRTSEI-----------YIHRSGRTAR 637
G D + + + + T I R GRT R
Sbjct: 448 ALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502
Score = 35.4 bits (81), Expect = 0.15
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 18/87 (20%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK-QLRILNKCPHILVATPGRLW 321
L+L P+ + G Y ++ G + +R + + +T G+
Sbjct: 261 LVLNPSVAATLGF-------GAY----MSKAHGIDPNIRTGVRTITTGAPVTYSTYGKF- 308
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRM 348
+ ++ DE
Sbjct: 309 -LAD----GGCSGGAYDIIICDECHST 330
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 62.0 bits (151), Expect = 1e-09
Identities = 70/460 (15%), Positives = 152/460 (33%), Gaps = 93/460 (20%)
Query: 869 FVKKTRNKLYALILAPTRELAIQVQNHILD----AGKYTPVKVACVVGGMSTEKQLRILN 924
F+ + Y ++ PT L IQ I AG T + G + ++ +
Sbjct: 94 FLALKGKRCY--VIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQ 151
Query: 925 KCP--HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 982
I++ T L H EL +++ +D+ D ++++ KN+ D++
Sbjct: 152 NLRNFKIVITTTQFL-------SKHYRELGHFDFIFVDDVDAILKAS-----KNV-DKLL 198
Query: 983 M-----------TETSQPRQTFVF-SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030
+ + R + +AT K + +
Sbjct: 199 HLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKK---------------------AELFR 237
Query: 1031 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 1090
LLN + + + +DE S L + + +++ +
Sbjct: 238 QLLNFDIGSSRITVRNV------EDVAV---NDESISTLSSILEKLGTGGIIYARTGEEA 288
Query: 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL--LAT--DVAARGLDIPG- 1145
+ + + L + + + ++F + L A RGLD+P
Sbjct: 289 EEIYESLKNK------FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPER 342
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
I + P + + + + L+ + ++ ++E+ +D
Sbjct: 343 IRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHID---- 394
Query: 1206 PIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTL---VLIES 1262
+ E + ++ K AK + E ++ ++ SGRT+R GLT L+E
Sbjct: 395 EVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED 454
Query: 1263 DEIPLYIKMFNSLEKKVDLPDF---PIDESVLSLIKKRID 1299
D ++ ++ ++ L D IDE + + +D
Sbjct: 455 DS-----ELLSAFIERAKLYDIEFKSIDEVDFEKLSRELD 489
Score = 35.0 bits (81), Expect = 0.25
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 21/119 (17%)
Query: 252 FVKKTRNKLYALILAPTRELAIQVQNHILD----AGKYTPVKVACVVGGMSTEKQLRILN 307
F+ + Y ++ PT L IQ I AG T + G + ++ +
Sbjct: 94 FLALKGKRCY--VIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQ 151
Query: 308 KCP--HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364
I++ T L H EL +++ +D+ D ++++ KN+ D++
Sbjct: 152 NLRNFKIVITTTQFL-------SKHYRELGHFDFIFVDDVDAILKAS-----KNV-DKL 197
Score = 30.4 bits (69), Expect = 5.3
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 14/79 (17%)
Query: 628 YIHRSGRTARANNEGLT----VVLIESDEI--PLKTKFNLQEEENNEEEE--------RA 673
YI SGRT+R GLT +L + E+ + L + E +E
Sbjct: 429 YIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSREL 488
Query: 674 EADKEKTEDINVTVSSKKK 692
+ +++ K
Sbjct: 489 DESRDRYRRRQEFDLIKPA 507
Score = 30.4 bits (69), Expect = 6.1
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 1356 ALILAPTRELAIQVQNHILD----AGKYTPVKVACVVGGMSTEKQLRILNKCP--HILVA 1409
++ PT L IQ I AG T + G + ++ + I++
Sbjct: 102 CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVIT 161
Query: 1410 TPGALSLKRIDLAKSIEYL 1428
T LS K +++
Sbjct: 162 TTQFLS-KHYRELGHFDFI 179
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 57.1 bits (139), Expect = 3e-08
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 27/154 (17%)
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTES--------KILCKHDEKDSYLYYFILQHPG 545
++I LL + P I I+ S ++ K L ++ + G
Sbjct: 190 QDIVRLLGLNDPLIQ-------IS-----SFDRPNIRYMLMEKFK-PLDQLMRYVQEQRG 236
Query: 546 RT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
++ +++CNS + V+ L S HA + R ++F+ + I++AT VA
Sbjct: 237 KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT-VA 295
Query: 605 -ARGLDIPGIEHVIHYHVPRTSEIY---IHRSGR 634
G++ P + V+H+ +PR E Y R+GR
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329
Score = 56.8 bits (138), Expect = 4e-08
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 1063 DEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
+ L ++ + G++ +++CNS + V+ L S HA + R +
Sbjct: 221 FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQE 280
Query: 1122 RFRDQNNSILLATDVA-ARGLDIPGIEHVIHYHVPRTSEIY---IHRSGR 1167
+F+ + I++AT VA G++ P + V+H+ +PR E Y R+GR
Sbjct: 281 KFQRDDLQIVVAT-VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 55.9 bits (134), Expect = 1e-07
Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 522 ESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQ-LLTMLKCSPLPLHASMN 579
++ D + +L ++ H + LV C ++ +L Q L H M+
Sbjct: 480 DNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539
Query: 580 QRQRLKNLDRFRDQNNS--ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+R + F +++ +LL +++ + G + H++ + +P ++ R GR R
Sbjct: 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDR 599
Score = 55.9 bits (134), Expect = 1e-07
Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 1055 ESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQ-LLTMLKCSPLPLHASMN 1112
++ D + +L ++ H + LV C ++ +L Q L H M+
Sbjct: 480 DNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539
Query: 1113 QRQRLKNLDRFRDQNNS--ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
+R + F +++ +LL +++ + G + H++ + +P ++ R GR R
Sbjct: 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDR 599
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 54.8 bits (132), Expect = 1e-07
Identities = 42/313 (13%), Positives = 92/313 (29%), Gaps = 72/313 (23%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI---------------- 922
LI+ PT LA Q + + + V G + K L +
Sbjct: 136 TLIVVPTLALAEQWKERLGI---FGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNR 192
Query: 923 ----------------------LNKCPHI--LVATPGRLWEFIQLGHFHLTELYKINYLV 958
++ P L AT R ++ L E+ + V
Sbjct: 193 FMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEI----LKEV--VGGKV 246
Query: 959 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
+ + H + V + E + K+ + +
Sbjct: 247 FELFPDSLAGKHLAKYTIKRIFVPLAEDERVEY-----------------EKREKVYKQF 289
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+ +++R +D I D + +I K L + +H
Sbjct: 290 LRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRK 349
Query: 1079 -RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
+ ++F V R++++ + + ++ +R + L+ FR ++++ V
Sbjct: 350 DKIIIFTRHNELVYRISKVFLIPA-----ITHRTSREEREEILEGFRTGRFRAIVSSQVL 404
Query: 1138 ARGLDIPGIEHVI 1150
G+D+P +
Sbjct: 405 DEGIDVPDANVGV 417
Score = 50.6 bits (121), Expect = 3e-06
Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 21/214 (9%)
Query: 449 PKIVDLTEKIGITKTLTESK---ILCKHDEKDSYLYYFILQHPGRTLCE------EIQDL 499
K+ +L K L + I E + Y + + L +D
Sbjct: 244 GKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDF 303
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVK 558
I D + +I K L + +H + ++F V
Sbjct: 304 NKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVY 363
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI- 617
R++++ + + ++ +R + L+ FR ++++ V G+D+P +
Sbjct: 364 RISKVFLIPA-----ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI 418
Query: 618 --HYHVPRTSEIYIHRSGRTARANNEGLTVVLIE 649
R YI R GR R + VL E
Sbjct: 419 MSGSGSARE---YIQRLGRILRPSKGKKEAVLYE 449
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 53.3 bits (128), Expect = 4e-07
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 24/118 (20%)
Query: 539 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598
+IL T F SI + + L S + L+ + + + + +
Sbjct: 172 WILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFI 227
Query: 599 LATDVAARGLDIPGIEHVI--------HYHVPRTSEIY-----------IHRSGRTAR 637
LATD+A G ++ +E V+ R GR R
Sbjct: 228 LATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284
Score = 53.3 bits (128), Expect = 4e-07
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 24/118 (20%)
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+IL T F SI + + L S + L+ + + + + +
Sbjct: 172 WILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFI 227
Query: 1132 LATDVAARGLDIPGIEHVI--------HYHVPRTSEIY-----------IHRSGRTAR 1170
LATD+A G ++ +E V+ R GR R
Sbjct: 228 LATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284
Score = 29.8 bits (67), Expect = 6.8
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322
L+LAPTR + ++ + + V S R + I L
Sbjct: 41 LVLAPTRVVLSEM------KEAFHGLDVKFHTQAFSAHGSGREV-----IDAMCHATLTY 89
Query: 323 FIQLGHFHLTELYKINYLVIDE 344
+ + +++DE
Sbjct: 90 RMLEPT----RVVNWEVIIMDE 107
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase,
T4-bacteriophage, recombination, hydrolase; 2.70A
{Enterobacteria phage T4}
Length = 510
Score = 50.7 bits (120), Expect = 3e-06
Identities = 39/322 (12%), Positives = 93/322 (28%), Gaps = 15/322 (4%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LI+ PT L Q+ + +D ++ + + GG S + + + T + +
Sbjct: 161 LIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK 220
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPEL-KNILDRVTMTETSQPRQTFVFSAT 998
+ ++ DE + + R
Sbjct: 221 EWF---------SQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQ 271
Query: 999 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 1058
+ + I + + + + +
Sbjct: 272 YVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRY---PDEFTTKLKGKTYQEEIKIITG 328
Query: 1059 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
L K ++ + L + Q V +S K + L+ + ++ R
Sbjct: 329 LSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNI 388
Query: 1119 NLDRFRDQNNSILLAT-DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 1177
+ I++A+ V + G+ + + HV+ H ++ I + GR R +
Sbjct: 389 MKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTI 448
Query: 1178 LVLIE-SDEIPLYIKMFNSLEK 1198
+ + D+ + K N+ +K
Sbjct: 449 ATVWDLIDDAGVKPKSANTKKK 470
Score = 47.6 bits (112), Expect = 3e-05
Identities = 45/300 (15%), Positives = 96/300 (32%), Gaps = 39/300 (13%)
Query: 374 QTMIESGHFPELKNILDRVTMTETSQ--PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 431
I G + K D + T Q +Q + + + + +L G+S S +S
Sbjct: 188 IKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIIS 247
Query: 432 KGDPSIKRLQ--------DLLNIKSPKIVDLTEKIGITKTLTESKILCK---HDEKDSYL 480
+ + + ++ + K T L E + + + Y
Sbjct: 248 GLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYP 307
Query: 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540
F + G+T EEI+ + + K ++ + L +
Sbjct: 308 DEFTTKLKGKTYQEEIKIITGLS------------------------KRNKWIAKLAIKL 343
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
Q V +S K + L+ + ++ R + I++A
Sbjct: 344 AQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403
Query: 601 T-DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIE-SDEIPLKTK 658
+ V + G+ + + HV+ H ++ I + GR R + + + D+ +K K
Sbjct: 404 SYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPK 463
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 48.8 bits (117), Expect = 1e-05
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 528 KHDEKDSYLYYFIL-QHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
++ + I ++ G++ +++C S +++T L L HA++ +
Sbjct: 249 NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTT 308
Query: 586 NLDRFRDQNNSILLATDVA-ARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
++ +++AT VA G+D P + VIH+ + ++ E Y SGR
Sbjct: 309 VHRKWSANEIQVVVAT-VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGR 357
Score = 48.8 bits (117), Expect = 1e-05
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 1061 KHDEKDSYLYYFIL-QHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
++ + I ++ G++ +++C S +++T L L HA++ +
Sbjct: 249 NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTT 308
Query: 1119 NLDRFRDQNNSILLATDVA-ARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
++ +++AT VA G+D P + VIH+ + ++ E Y SGR
Sbjct: 309 VHRKWSANEIQVVVAT-VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGR 357
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 49.0 bits (117), Expect = 1e-05
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+P +I + ++G K Q+ + LL ++ + TGSGKTL + I+
Sbjct: 13 LKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGII 68
Score = 49.0 bits (117), Expect = 1e-05
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+P +I + ++G K Q+ + LL ++ + TGSGKTL + I+
Sbjct: 13 LKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGII 68
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 46.4 bits (110), Expect = 6e-05
Identities = 74/523 (14%), Positives = 150/523 (28%), Gaps = 139/523 (26%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E I L ++G ++ Q+ + S +L K+ + + T SGKTL I ++
Sbjct: 6 LRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV---- 61
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ K A+ + P + LA +
Sbjct: 62 -----------------------------------HRILTQGGK--AVYIVPLKALAEEK 84
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
D K ++VA G ++ + I++AT + ++ + +
Sbjct: 85 FQEFQDWEKIG-LRVAMATGDYDSKDEWL---GKYDIIIATAEK-FDSLLRHGSSWIKD- 138
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF-SATLTHSLKNSLNLKK 1011
+ LV DE + L+ IL + + + SAT+
Sbjct: 139 -VKILVADEIHLIGSRDRGATLEVILAHM------LGKAQIIGLSATI------------ 179
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKS------PKIVDLTEKIGITKTLTESKILCKHDEK 1065
+ + L + LN + P V L + +T
Sbjct: 180 ------------GNPEELAEWLNAELIVSDWRP--VKLRRGVFYQGFVTWEDGSIDRFSS 225
Query: 1066 DSYLYYFILQHPGRTLVFCNS----ISSVKRLTQLLTMLKCSPLPL-------------- 1107
L Y ++ L+F N L++ + L P
Sbjct: 226 WEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPT 285
Query: 1108 ---------------HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG---IEHV 1149
HA + + +R+ + FR ++AT + G++ P I
Sbjct: 286 NEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRD 345
Query: 1150 IHYHVPRTSEIY--------IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
I + E + R+GR + + G +++ SD+ + +
Sbjct: 346 IWRYSDFGMERIPIIEVHQMLGRAGR-PKYDEVGEGIIVSTSDDPR------EVMNHYIF 398
Query: 1202 LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRS 1244
+ S LS ++ ++ +
Sbjct: 399 GKPEKL-FSQLSNESNLRSQVLALIATFGYSTVEEILKFISNT 440
Score = 44.8 bits (106), Expect = 2e-04
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ E I L ++G ++ Q+ + S +L K+ + + T SGKTL I ++
Sbjct: 6 LRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV 61
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 46.1 bits (109), Expect = 8e-05
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
I + G+T+ F SI + + L + L + K D ++
Sbjct: 351 ITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWD----FVV 406
Query: 600 ATDVAARGLDIPGIEHVI 617
TD++ G + VI
Sbjct: 407 TTDISEMGANF-RAGRVI 423
Score = 46.1 bits (109), Expect = 8e-05
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I + G+T+ F SI + + L + L + K D ++
Sbjct: 351 ITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWD----FVV 406
Query: 1133 ATDVAARGLDIPGIEHVI 1150
TD++ G + VI
Sbjct: 407 TTDISEMGANF-RAGRVI 423
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 43.3 bits (102), Expect = 5e-04
Identities = 54/395 (13%), Positives = 97/395 (24%), Gaps = 131/395 (33%)
Query: 798 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 857
V ++ + G+GKT I+ + V E
Sbjct: 11 VDEDIFRKKRLTIMDLHPGAGKT--------KRILPSI-------------------VRE 43
Query: 858 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE 917
L +T LILAPTR +A +++ + G P++
Sbjct: 44 ALLRR--------LRT------LILAPTRVVAAEMEEAL--RGL--PIRYQTPAVKSDHT 85
Query: 918 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 977
+ + + + + N +V+DE HF + ++
Sbjct: 86 GREI-------VDLMCHATFTTRLLSST----RVPNYNLIVMDE-------AHFTDPCSV 127
Query: 978 LDRVTMTETS--QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 1035
R ++ +AT
Sbjct: 128 AARGYISTRVEMGEAAAIFMTATPP--------------------------GSTDPFPQS 161
Query: 1036 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 1095
SP I D+ +I T + + G+T+ F SI + +
Sbjct: 162 NSP-IEDIEREIPERSWNTGFDWIT--------------DYQGKTVWFVPSIKAGNDIAN 206
Query: 1096 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI----- 1150
L + L + K D ++ TD++ G + VI
Sbjct: 207 CLRKSGKRVIQLSRKTFDTEYPKTKLTDWD----FVVTTDISEMGANF-RAGRVIDPRRC 261
Query: 1151 -----HYHVPRTSEIY----------IHRSGRTAR 1170
P + R GR R
Sbjct: 262 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR 296
Score = 42.9 bits (101), Expect = 8e-04
Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 25/118 (21%)
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
I + G+T+ F SI + + L + L + K D ++
Sbjct: 184 ITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWD----FVV 239
Query: 600 ATDVAARGLDIPGIEHVI----------HYHVPRTSEIY----------IHRSGRTAR 637
TD++ G + VI P + R GR R
Sbjct: 240 TTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR 296
Score = 30.2 bits (68), Expect = 5.8
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 181 VMPSALLARKDIVGAAETGSGKT 203
V ++ + G+GKT
Sbjct: 11 VDEDIFRKKRLTIMDLHPGAGKT 33
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 42.9 bits (101), Expect = 7e-04
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 22/115 (19%)
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
I + GRT+ F +SI + L L L+ + + K D ++
Sbjct: 167 ITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWD----FVI 222
Query: 600 ATDVAARGLDIPGIEHVI-------HYHVPRTSEIY----------IHRSGRTAR 637
TD++ G + + VI + + R GR R
Sbjct: 223 TTDISEMGANF-KADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR 276
Score = 42.9 bits (101), Expect = 7e-04
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 22/115 (19%)
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I + GRT+ F +SI + L L L+ + + K D ++
Sbjct: 167 ITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWD----FVI 222
Query: 1133 ATDVAARGLDIPGIEHVI-------HYHVPRTSEIY----------IHRSGRTAR 1170
TD++ G + + VI + + R GR R
Sbjct: 223 TTDISEMGANF-KADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR 276
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 39.8 bits (93), Expect = 0.003
Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 41/164 (25%)
Query: 185 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 244
L K+I+ TGSGKT A + ++ +
Sbjct: 44 PALEGKNIIICLPTGSGKTRV-----------------------------AVYIAKDHLD 74
Query: 245 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 304
+ +E K ++L L Q+ +V + G +
Sbjct: 75 KKKKASEPGK-------VIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP 127
Query: 305 ILNKCPHILVATP----GRLWEFIQLGHFHLTELYKINYLVIDE 344
+ K I+++T L + L + ++IDE
Sbjct: 128 EVVKSCDIIISTAQILENSLLNLENGEDAGVQ-LSDFSLIIIDE 170
Score = 39.8 bits (93), Expect = 0.003
Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 41/164 (25%)
Query: 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861
L K+I+ TGSGKT A + ++ +
Sbjct: 44 PALEGKNIIICLPTGSGKTRV-----------------------------AVYIAKDHLD 74
Query: 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921
+ +E K ++L L Q+ +V + G +
Sbjct: 75 KKKKASEPGK-------VIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP 127
Query: 922 ILNKCPHILVATP----GRLWEFIQLGHFHLTELYKINYLVIDE 961
+ K I+++T L + L + ++IDE
Sbjct: 128 EVVKSCDIIISTAQILENSLLNLENGEDAGVQ-LSDFSLIIIDE 170
Score = 32.1 bits (73), Expect = 1.1
Identities = 8/56 (14%), Positives = 18/56 (32%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
++L L Q+ +V + G + + K I+++T
Sbjct: 85 VIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTA 140
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 40.3 bits (94), Expect = 0.005
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
I + G+T+ F S+ + Q L + L+ + K + D ++
Sbjct: 406 ITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWD----FVI 461
Query: 600 ATDVAARGLDIPGIEHVI 617
TD++ G + G VI
Sbjct: 462 TTDISEMGANF-GASRVI 478
Score = 40.3 bits (94), Expect = 0.005
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I + G+T+ F S+ + Q L + L+ + K + D ++
Sbjct: 406 ITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWD----FVI 461
Query: 1133 ATDVAARGLDIPGIEHVI 1150
TD++ G + G VI
Sbjct: 462 TTDISEMGANF-GASRVI 478
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 39.8 bits (93), Expect = 0.007
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
I ++ G+T+ F S+ + L + L+ + K + D ++
Sbjct: 186 ITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWD----FVI 241
Query: 600 ATDVAARGLDIPGIEHVI 617
TD++ G + G VI
Sbjct: 242 TTDISEMGANF-GASRVI 258
Score = 39.8 bits (93), Expect = 0.007
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I ++ G+T+ F S+ + L + L+ + K + D ++
Sbjct: 186 ITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWD----FVI 241
Query: 1133 ATDVAARGLDIPGIEHVI 1150
TD++ G + G VI
Sbjct: 242 TTDISEMGANF-GASRVI 258
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.2 bits (88), Expect = 0.009
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 1404 PHILVATPGALSLKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIID-----DENLI 1458
L P ++ R + K ++ L++ K W EKA KD++ + E +
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVME-QEWREKAKKDLE---EWNQRQSEQVE 132
Query: 1459 QPKANSRENALMSKALVSKRKE 1480
+ K N+R KA +
Sbjct: 133 KNKINNRIAD---KAFYQQPDA 151
Score = 32.8 bits (74), Expect = 0.50
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 24/102 (23%)
Query: 662 QEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNK 721
Q + +E E +E+ ++K+L+ S+V E +
Sbjct: 76 QADRLTQEPESIRKWREE----------QRKRLQELDAASKVMEQEW---------REKA 116
Query: 722 TEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDM 763
+++ +E + ++ +Q +K K A+K + + D+
Sbjct: 117 KKDL--EEWNQRQSEQVEKNKINNRIADKAFYQ---QPDADI 153
Score = 31.7 bits (71), Expect = 1.1
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259
+ + + T+E E+ EE + L+EL+ S + ++ K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
Score = 31.7 bits (71), Expect = 1.1
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876
+ + + T+E E+ EE + L+EL+ S + ++ K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
Score = 31.3 bits (70), Expect = 1.5
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 1294 IKK-RIDLAKSIEYLESKIKKNRPDNWLEKAAKDMD 1328
I+K R + K ++ L++ K W EKA KD++
Sbjct: 87 IRKWREEQRKRLQELDAASKVME-QEWREKAKKDLE 121
Score = 30.9 bits (69), Expect = 2.3
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 28/92 (30%)
Query: 662 QEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNK 721
+EE+ +E A K ++ ++K K+ ++ E + + +QV K
Sbjct: 91 REEQRKRLQELDAASKVMEQEW-------REKAKK-------DLEEWNQRQS---EQVEK 133
Query: 722 TEEIQSDEPHSKKLKQKKKKKQTYTSANKELL 753
K+ + K Y + +++
Sbjct: 134 N-----------KINNRIADKAFYQQPDADII 154
Score = 29.7 bits (66), Expect = 4.8
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 88 VSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMF 147
+++ T +P+ + K E Q K +++ A K+L E + +E
Sbjct: 74 IAQADRLTQEPE-SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE--- 129
Query: 148 VQMAEWVKFN 157
Q+ + N
Sbjct: 130 -QVEKNKINN 138
Score = 29.7 bits (66), Expect = 5.1
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 705 VSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMF 764
+++ T +P+ + K E Q K +++ A K+L E + +E
Sbjct: 74 IAQADRLTQEPE-SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE--- 129
Query: 765 VQMAEWVKFN 774
Q+ + N
Sbjct: 130 -QVEKNKINN 138
Score = 29.7 bits (66), Expect = 5.2
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 23/98 (23%)
Query: 50 EEEVEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSAN-TNDPDDQVNKTEEI 108
+ +E E+ ++ E ++K+L+ S+V E D ++ + E
Sbjct: 78 DRLTQEPESIRKWRE-------EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE- 129
Query: 109 QSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDM 146
Q +K K A+K + + D+
Sbjct: 130 -----------QVEKNKINNRIADKAFYQ---QPDADI 153
Score = 29.0 bits (64), Expect = 8.0
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 22/94 (23%)
Query: 44 QEAENNEEEVEEAEAD-KEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQV 102
QE E+ + EE +E +SK + + ++ + ++ E + + +QV
Sbjct: 82 QEPESIRKWREEQRKRLQELDA------ASKVMEQEWREKAKK-DLEEWNQRQS---EQV 131
Query: 103 NKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELL 136
K K+ + K Y + +++
Sbjct: 132 EKN-----------KINNRIADKAFYQQPDADII 154
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 38.5 bits (90), Expect = 0.016
Identities = 13/80 (16%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 534 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 593
+ + IL+ T+V+ S + ++ + + + ++Q++ L +FR
Sbjct: 438 TVIEDIILKVKKNTIVYF---PSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRD 494
Query: 594 NNSIL-LATDVAARGLDIPG 612
+ +I ++ + G++ PG
Sbjct: 495 HGTIFAVSGGRLSEGINFPG 514
Score = 38.5 bits (90), Expect = 0.016
Identities = 13/80 (16%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ + IL+ T+V+ S + ++ + + + ++Q++ L +FR
Sbjct: 438 TVIEDIILKVKKNTIVYF---PSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRD 494
Query: 1127 NNSIL-LATDVAARGLDIPG 1145
+ +I ++ + G++ PG
Sbjct: 495 HGTIFAVSGGRLSEGINFPG 514
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 38.7 bits (89), Expect = 0.021
Identities = 26/189 (13%), Positives = 65/189 (34%), Gaps = 23/189 (12%)
Query: 18 DGGVKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKL 77
+ V+ P+ + + + E E+ E ++ +E + + K +
Sbjct: 47 ETPVELPTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSENKKIKSNKSKTED 106
Query: 78 KRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLE 137
K K+ V + + E+ + + + + ++ +++ +
Sbjct: 107 KNKKVVVPVL---------ADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQVRHQ 157
Query: 138 VDTSNNEDMFVQMAEWVKFNIPETIIRALY--QKGFKTPTKIQSMVMPSALLARKDIVGA 195
V N D + +AE + N T L Q ++ S + + ++ +
Sbjct: 158 VALPPNYD-YTPIAEHKRVNEARTYPFTLDPFQD--------TAI---SCIDRGESVLVS 205
Query: 196 AETGSGKTL 204
A T +GKT+
Sbjct: 206 AHTSAGKTV 214
Score = 37.9 bits (87), Expect = 0.032
Identities = 26/183 (14%), Positives = 69/183 (37%), Gaps = 16/183 (8%)
Query: 641 EGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNP 700
E V L N+ + ++ ++++ ++EK E +KK K + +
Sbjct: 46 EETPVELPTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSENKKIKSNKSKTE 105
Query: 701 SQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNN 760
+ + + + + + + E+ + + + + ++ +++ +V N
Sbjct: 106 DKNKKVVVPVLADSFEQEA--SREVDASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPN 163
Query: 761 EDMFVQMAEWVKFNIPETIIRALY--QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSG 818
D + +AE + N T L Q ++ S + + ++ +A T +G
Sbjct: 164 YD-YTPIAEHKRVNEARTYPFTLDPFQD--------TAI---SCIDRGESVLVSAHTSAG 211
Query: 819 KTL 821
KT+
Sbjct: 212 KTV 214
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 37.9 bits (88), Expect = 0.030
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+I + L ++G + Q+ + + + K+++ A T +GKTL + ++ +
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVE-KVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK 67
Query: 217 K 217
Sbjct: 68 G 68
Score = 37.9 bits (88), Expect = 0.030
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+I + L ++G + Q+ + + + K+++ A T +GKTL + ++ +
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVE-KVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK 67
Query: 834 K 834
Sbjct: 68 G 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 36.3 bits (83), Expect = 0.099
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 12 TTAKVKDGGVKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVS 71
TTA+ K K K++K + K K + + N + E E D+E + +
Sbjct: 817 TTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYK------N 870
Query: 72 SKKKKLKRKQNPSQVEVSELSANTNDPDD 100
K + N +++ + + DD
Sbjct: 871 KYSSKPYKVDNMTRILPQQSRYISFIKDD 899
Score = 35.2 bits (80), Expect = 0.22
Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 25 RKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEK--TEGINVTVSSKKKKLKRKQN 82
+ K ++ K + EE + + EK T ++ T +K + K K+
Sbjct: 774 GSDQAIPKFQMNCYAKEDAFSYPRMYEE--ASGKEVEKVATAVLSTTARAKARAKKTKKE 831
Query: 83 PSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSAN 132
E + + ++ + I+ + + ++ + K + Y N
Sbjct: 832 KGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKVDN 881
Score = 32.5 bits (73), Expect = 1.3
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 668 EEEERAEADKEKTED--INVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEI 725
EE + + EK ++ T +K + K K+ E + + ++ + I
Sbjct: 798 MYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGI 857
Query: 726 QSDEPHSKKLKQKKKKKQTYTSAN 749
+ + + ++ + K + Y N
Sbjct: 858 KETKENDEEFYKNKYSSKPYKVDN 881
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 35.9 bits (83), Expect = 0.12
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 21 VKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRK 80
V++ +K L+ K+ ++ + +E + E T S++ +KL+
Sbjct: 916 VERYKKLHIGLENKIMQLQ----RKIDEQNKEYKSLLEKMNNLEI---TYSTETEKLRSD 968
Query: 81 QNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLE 137
++ E TN ++ EEI + + +KK + + K E
Sbjct: 969 VERLRMSEEEAKNATN---RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022
Score = 33.5 bits (77), Expect = 0.72
Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 655 LKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTND 714
L+ K + + +E+ + ++ EK ++ +T S++ +KL+ ++ E TN
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN- 984
Query: 715 PDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLE 754
++ EEI + + +KK + + K E
Sbjct: 985 --RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022
Score = 30.8 bits (70), Expect = 3.8
Identities = 16/108 (14%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 22 KKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQ 81
+K + + + K + +EE+ + + +T+ T+ K K +
Sbjct: 962 TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021
Query: 82 NPSQVEVSELSANTNDPDDQVNK---TEEIQSDEPSSKKLKQKKKKKQ 126
E+ E + +++N+ + + E KKL ++ K+ +
Sbjct: 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 34.9 bits (80), Expect = 0.20
Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 11 KTTAKVKDGGVKKKRKKKKPLKT------------------KVKSKTKPNLQEAENNEEE 52
+ A + KKKR+KKK K +V + + + E + +E+
Sbjct: 25 EGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDED 84
Query: 53 VEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDE 112
E+ + D + G KK+ K + +P V + +L N P Q + Q
Sbjct: 85 DEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPICDLYPNGVFPKGQECEYPPTQDGR 144
Query: 113 PSSKKLKQKKKKKQT 127
++ + ++KK
Sbjct: 145 TAAWRTTSEEKKALD 159
Score = 34.5 bits (79), Expect = 0.29
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 23/107 (21%)
Query: 656 KTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDP 715
+ +L + + ++ E A + K++K K+ + PS E +
Sbjct: 9 ASGSHLNGDLDPDDREEGAASTAEEA-----AKKKRRKKKKSKGPSAAGEQEPDKESGAS 63
Query: 716 DDQVNKTEEIQSDEP------------------HSKKLKQKKKKKQT 744
D+V + E + E KK K+KKK+
Sbjct: 64 VDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
Score = 33.7 bits (77), Expect = 0.54
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 26/115 (22%)
Query: 31 LKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSE 90
++ S + N ++ EE + A++ K++K K+ + PS E
Sbjct: 4 VEEVAASGSHLNGDLDPDDREEGAASTAEEAA--------KKKRRKKKKSKGPSAAGEQE 55
Query: 91 LSANTNDPDDQVNKTEEIQSDEPS------------------SKKLKQKKKKKQT 127
+ D+V + E + E KK K+KKK+
Sbjct: 56 PDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Length = 540
Score = 34.6 bits (79), Expect = 0.30
Identities = 14/127 (11%), Positives = 34/127 (26%), Gaps = 13/127 (10%)
Query: 1024 PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLV 1082
P L + I + E +E + + L LV
Sbjct: 330 PESLTLTNSYKIVVNESYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYENSSKSVLV 389
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK--NLDRFRDQNNSILLA--TDVAA 1138
F S + L + L P+ + + ++ + + +++ +
Sbjct: 390 FF---PSYEMLESVRIHLSGIPV-----IEENKKTRHEEVLELMKTGKYLVMLVMRAKES 441
Query: 1139 RGLDIPG 1145
G++
Sbjct: 442 EGVEFRE 448
Score = 33.0 bits (75), Expect = 0.83
Identities = 12/124 (9%), Positives = 33/124 (26%), Gaps = 13/124 (10%)
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCN 552
+ + I + E +E + + L LVF
Sbjct: 333 LTLTNSYKIVVNESYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYENSSKSVLVFF- 391
Query: 553 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK--NLDRFRDQNNSILLA--TDVAARGL 608
S + L + L P+ + + ++ + + +++ + G+
Sbjct: 392 --PSYEMLESVRIHLSGIPV-----IEENKKTRHEEVLELMKTGKYLVMLVMRAKESEGV 444
Query: 609 DIPG 612
+
Sbjct: 445 EFRE 448
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.40
Identities = 3/17 (17%), Positives = 11/17 (64%)
Query: 1223 KSIEYLESKIKKNRPDN 1239
++++ L++ +K D+
Sbjct: 20 QALKKLQASLKLYADDS 36
Score = 32.6 bits (73), Expect = 0.40
Identities = 3/17 (17%), Positives = 11/17 (64%)
Query: 1302 KSIEYLESKIKKNRPDN 1318
++++ L++ +K D+
Sbjct: 20 QALKKLQASLKLYADDS 36
Score = 32.6 bits (73), Expect = 0.40
Identities = 3/17 (17%), Positives = 11/17 (64%)
Query: 1423 KSIEYLESKIKKNRPDN 1439
++++ L++ +K D+
Sbjct: 20 QALKKLQASLKLYADDS 36
Score = 31.1 bits (69), Expect = 1.6
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 436 SIKRLQDLLNIKSPKIVDLTEKIGITKTL 464
++K+LQ L + + D + I T+
Sbjct: 21 ALKKLQASLKLYAD---DSAPALAIKATM 46
Score = 31.1 bits (69), Expect = 1.6
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 1025 SIKRLQDLLNIKSPKIVDLTEKIGITKTL 1053
++K+LQ L + + D + I T+
Sbjct: 21 ALKKLQASLKLYAD---DSAPALAIKATM 46
Score = 30.3 bits (67), Expect = 2.5
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Query: 580 QRQRLKNLDRFRDQNNSI-LLATDVAARGLDIPG-IE 614
++Q LK L S+ L A D +A L I +E
Sbjct: 18 EKQALKKLQ------ASLKLYADD-SAPALAIKATME 47
Score = 30.3 bits (67), Expect = 2.5
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Query: 1113 QRQRLKNLDRFRDQNNSI-LLATDVAARGLDIPG-IE 1147
++Q LK L S+ L A D +A L I +E
Sbjct: 18 EKQALKKLQ------ASLKLYADD-SAPALAIKATME 47
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 33.8 bits (76), Expect = 0.56
Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 21/182 (11%)
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN--SILLAT 1134
+ C S + + +++ + + ++ S+ +L +F D N+ IL+AT
Sbjct: 320 RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT 379
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIH-----------------RSGRTARANNEGLT 1177
D GL++ I +I Y + + S R+GR + EG
Sbjct: 380 DAIGMGLNLS-IRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEV 438
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRP 1237
+ D L + ++ P E + + A ++ + ++
Sbjct: 439 TTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFA-YHLPDATLSNLIDIFVDFSQV 497
Query: 1238 DN 1239
D
Sbjct: 498 DG 499
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 33.4 bits (75), Expect = 0.69
Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 27 KKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQV 86
K++P + + + ++ + +E E + + ++K E V V S+ ++ +
Sbjct: 3 KRRPKEAEPEQVAPETPEDRDEDEREEKRRKTTRKKLESHTVPVQSRSERKAAQSKSVIP 62
Query: 87 EVSEL-----SANTNDPDDQVNKTEEIQSDEP 113
+++ + +DP+ + + E DEP
Sbjct: 63 KINSPKCPECGQHLDDPNLKYQQHPEDAVDEP 94
Score = 30.3 bits (67), Expect = 5.9
Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 649 ESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSEL 708
E++ + + +E+ EE+R + ++K E V V S+ ++ + +++
Sbjct: 8 EAEPEQVAPETPEDRDEDEREEKRRKTTRKKLESHTVPVQSRSERKAAQSKSVIPKINSP 67
Query: 709 -----SANTNDPDDQVNKTEEIQSDEP 730
+ +DP+ + + E DEP
Sbjct: 68 KCPECGQHLDDPNLKYQQHPEDAVDEP 94
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 32.5 bits (73), Expect = 0.95
Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 5/126 (3%)
Query: 1 KNKTVVIGAPKTTAKVKDGGVKKKR-----KKKKPLKTKVKSKTKPNLQEAENNEEEVEE 55
PK + + +K+ K ++ +KT + + +
Sbjct: 168 AKGKDRTKCPKIQRLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKA 227
Query: 56 AEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSS 115
A E + KK K + + +A P Q KT +
Sbjct: 228 HAASAPVVEAPKKVEAPKKVDPKAAKTTPAATKATPAATKVAPKTQAAKTTTPAPAVKDA 287
Query: 116 KKLKQK 121
KK +K
Sbjct: 288 KKTTKK 293
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.5 bits (74), Expect = 1.4
Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 18/149 (12%)
Query: 22 KKKRKKKKPLKTKVKSKTKPNLQEAENN----------EEEVEEAEADKEKTEGINVTVS 71
+K + +K K+K L + N EE V + + + E ++
Sbjct: 972 QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031
Query: 72 SKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEE--------IQSDEPSSKKLKQKKK 123
K K + + +V + + + + + K E I + +LK +
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091
Query: 124 KKQTYTSANKELLEVDTSNNEDMFVQMAE 152
KK+ A LE +TS + ++ E
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRE 1120
Score = 30.2 bits (68), Expect = 7.9
Identities = 40/230 (17%), Positives = 86/230 (37%), Gaps = 42/230 (18%)
Query: 663 EEENNEEEER----------AEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANT 712
+ E + +++ EA ++K + VT K KK++ + + ++L+
Sbjct: 947 QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006
Query: 713 NDPDDQVNKTE-EIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWV 771
+++V+ + +E +K L + K K ++ S + L+ + + +++
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL-------- 1058
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
E I R L + +I + A L + E L
Sbjct: 1059 -----EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE-------------LQAA 1100
Query: 832 VNKLENPTEEDENDSG----LEEEAEEVLEELEEESANTTEFVKKTRNKL 877
+ +LE+ T + N LE ++ E+LE E A + +K + L
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK-AEKQKRDL 1149
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 31.9 bits (72), Expect = 1.6
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 534 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 593
YL Q LV S + R+ +++ K ++ +++L
Sbjct: 383 DYLLKIYFQAKANVLVVFPSYEIMDRVMSRISLPK-------YVESEDSSVEDLYSAISA 435
Query: 594 NNSILLATDVAAR---GLDIPGIEHVI 617
NN +L+ + + G+++ + +
Sbjct: 436 NNKVLIGSVGKGKLAEGIELRNNDRSL 462
Score = 31.9 bits (72), Expect = 1.6
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
YL Q LV S + R+ +++ K ++ +++L
Sbjct: 383 DYLLKIYFQAKANVLVVFPSYEIMDRVMSRISLPK-------YVESEDSSVEDLYSAISA 435
Query: 1127 NNSILLATDVAAR---GLDIPGIEHVI 1150
NN +L+ + + G+++ + +
Sbjct: 436 NNKVLIGSVGKGKLAEGIELRNNDRSL 462
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 31.6 bits (71), Expect = 1.9
Identities = 0/148 (0%), Positives = 0/148 (0%), Gaps = 16/148 (10%)
Query: 1 KNKTVVIGAPKTTAK--VKDGGVKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEA 58
+K + K + +R+ + K + +
Sbjct: 70 FHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDL 129
Query: 59 DKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEP----- 113
+K +V ++ NK Q
Sbjct: 130 VFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIPSET 189
Query: 114 --SSKKLKQKKKKKQTYTSANKELLEVD 139
Sbjct: 190 ------- 210
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus
stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB:
1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Length = 149
Score = 30.2 bits (69), Expect = 2.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 44 QEAENNEEEVEEAEADKEKTEGINVTVSSK 73
+E EE+ A+ KE+ E + VT+ +K
Sbjct: 53 KEQRQAAEELANAKKLKEQLEKLTVTIPAK 82
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 31.3 bits (70), Expect = 2.7
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 5/136 (3%)
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN--LQEEENNEEEER 672
+ +HY R+ ++ N+G + + + +++ E E+
Sbjct: 283 NNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVF 342
Query: 673 AEADKEKTE---DINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDE 729
KEK + D + + +++K+ E+ E D + I +
Sbjct: 343 EMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQ 402
Query: 730 PHSKKLKQKKKKKQTY 745
S+ L++ KKK + +
Sbjct: 403 NSSRTLEKNKKKGKIF 418
Score = 30.2 bits (67), Expect = 6.3
Identities = 15/107 (14%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 22 KKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQ 81
+++ K K +++ + ++ E ++ + + + E + + ++ K+L+ K+
Sbjct: 323 ERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKR 382
Query: 82 NPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTY 128
+ E + + I + SS+ L++ KKK + +
Sbjct: 383 RQFEDEKANW-----------EAQQRILEQQNSSRTLEKNKKKGKIF 418
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I
2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I
3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Length = 148
Score = 29.8 bits (68), Expect = 3.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 44 QEAENNEEEVEEAEADKEKTEGINVTVSSK 73
+A+ E EAE KE E + +T+ +
Sbjct: 53 AQAKRLAERKAEAERLKEILENLTLTIPVR 82
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond
formation; 3.10A {Deinococcus radiodurans} SCOP:
i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F
1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Length = 146
Score = 29.4 bits (67), Expect = 4.3
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 44 QEAENNEEEVEEAEADKEKTEGINVTVSSK 73
+ +E AE + G+ V +S +
Sbjct: 52 SIEKRQAQEKAVAEDLASRLNGVAVELSVR 81
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 30.6 bits (70), Expect = 4.7
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 211 LTGIVNKLENPTEEDENDSGLEEEA-----EEVLEELEEESANTTEFVKKT 256
L GI + + + E+ L LE+++ E +K
Sbjct: 341 LDGIQSAGAAAGAAAADAAAAAPSEIPGKMEDALAALEQDA----ECLKAG 387
Score = 30.6 bits (70), Expect = 4.7
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 828 LTGIVNKLENPTEEDENDSGLEEEA-----EEVLEELEEESANTTEFVKKT 873
L GI + + + E+ L LE+++ E +K
Sbjct: 341 LDGIQSAGAAAGAAAADAAAAAPSEIPGKMEDALAALEQDA----ECLKAG 387
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 29.1 bits (64), Expect = 6.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 219 ENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251
E+ ++D+ D EEE + LE+L E NT E
Sbjct: 57 EDDDDDDDEDEEEEEEVTDQLEDLREHFKNTEE 89
Score = 29.1 bits (64), Expect = 6.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 836 ENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868
E+ ++D+ D EEE + LE+L E NT E
Sbjct: 57 EDDDDDDDEDEEEEEEVTDQLEDLREHFKNTEE 89
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 29.9 bits (66), Expect = 7.8
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 12/143 (8%)
Query: 8 GAPKTTAKVKDGGVKKKRKKKKPLKTKVKSKTKPNLQEAENNEEEVEEAEADKEKTEGIN 67
G+P+ T K +K+KP + K + KP + E + E + ++K +
Sbjct: 42 GSPEVTDGPKTEEELLALEKEKPAEEKP-KEDKPAAAKPETPKTVTPEWQTVEKKEQQGT 100
Query: 68 VTVSSKKKKLKRKQNPSQVEVSELSANTN--DPDDQVNKTEEIQSDEPSSKKLKQKKKKK 125
VT+ +K + +S + N N P K + ++ ++ L K +
Sbjct: 101 VTIREEKGVRYNQ-------LSSTAQNDNAGKPALFEKKGLTVDANGNATVDLTFKDDSE 153
Query: 126 QTYTSANKELLEVDTSNNEDMFV 148
+ + L DT NN +FV
Sbjct: 154 KGKSRFGVFLKFKDTKNN--VFV 174
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 29.8 bits (66), Expect = 9.2
Identities = 17/127 (13%), Positives = 47/127 (37%), Gaps = 14/127 (11%)
Query: 80 KQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVD 139
+ + + +A+ + + E+ + + + + ++ +++ +V
Sbjct: 2 HHHHHENLYFQGAASMLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQVRHQVA 61
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALY--QKGFKTPTKIQSMVMPSALLARKDIVGAAE 197
N D + +AE + N T L Q ++ S + + ++ +A
Sbjct: 62 LPPNYD-YTPIAEHKRVNEARTYPFTLDPFQD--------TAI---SCIDRGESVLVSAH 109
Query: 198 TGSGKTL 204
T +GKT+
Sbjct: 110 TSAGKTV 116
>2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase; distorted beta
barrel, hydrolase, nucleotide metabolism; HET: TTP 1PE;
2.00A {Mycobacterium tuberculosis} PDB: 2qlp_A*
Length = 190
Score = 29.0 bits (65), Expect = 9.6
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 1316 PDNWLEKAAKDMDIIID--DENLIQPN 1340
D L + ID D+ L+QP+
Sbjct: 4 SDRDLRAEISSGRLGIDPFDDTLVQPS 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.360
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,858,972
Number of extensions: 1378637
Number of successful extensions: 4731
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4322
Number of HSP's successfully gapped: 433
Length of query: 1493
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1387
Effective length of database: 3,742,167
Effective search space: 5190385629
Effective search space used: 5190385629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.2 bits)