RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16310
(1493 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 117 bits (295), Expect = 2e-30
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 49/236 (20%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ + I+ A+ KGF+ PT IQ V+P L +IV A TGSGKT +F IP++
Sbjct: 6 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ N + A+IL PTRELA
Sbjct: 66 LVNE----------------------------------------NNGIEAIILTPTRELA 85
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
IQV + I +K+A + GG + Q++ L +I+V TPGR+ + I G +L
Sbjct: 86 IQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN-ANIVVGTPGRILDHINRGTLNLK 144
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+ Y ++DE D M+ G +++ IL+ ++ ++ +FSAT+ + N
Sbjct: 145 ---NVKYFILDEADEMLNMGFIKDVEKILNA-----CNKDKRILLFSATMPREILN 192
Score = 107 bits (267), Expect = 1e-26
Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 77/264 (29%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ + I+ A+ KGF+ PT IQ V+P L +IV A TGSGKT +F IP++
Sbjct: 6 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ N + A+IL PTRELA
Sbjct: 66 LVNE----------------------------------------NNGIEAIILTPTRELA 85
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
IQV + I +K+A + GG + Q++ L +I+V TPGR+ + I G +L
Sbjct: 86 IQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN-ANIVVGTPGRILDHINRGTLNLK 144
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ Y ++DE D M+ G +++ IL+
Sbjct: 145 ---NVKYFILDEADEMLNMGFIKDVEKILNA----------------------------- 172
Query: 393 TMTETSQPRQTFVFSATLTHSLKN 416
++ ++ +FSAT+ + N
Sbjct: 173 ----CNKDKRILLFSATMPREILN 192
Score = 42.0 bits (98), Expect = 2e-04
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 1345 FESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 1404
E N +A+IL PTRELAIQV + I +K+A + GG + Q++ L
Sbjct: 64 IELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN-A 122
Query: 1405 HILVATPGAL----SLKRIDLAKSIEYL 1428
+I+V TPG + + ++L K+++Y
Sbjct: 123 NIVVGTPGRILDHINRGTLNL-KNVKYF 149
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 109 bits (273), Expect = 3e-27
Identities = 75/239 (31%), Positives = 112/239 (46%), Gaps = 35/239 (14%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ + + + TI + ++ PT IQ +P A+L +DI+ A+TGSGKT AF IP
Sbjct: 20 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIP 78
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
I+ +V + N + LILAPTR
Sbjct: 79 IINHLVCQDLNQQRYSKTAY------------------------------PKCLILAPTR 108
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELAIQ+ + TP++ V GG T Q+R + H+LVATPGRL +FI+
Sbjct: 109 ELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKI 168
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
L Y+V+DE DRM++ G P+++ I++ M RQT +FSAT ++
Sbjct: 169 S---LEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN-RQTLMFSATFPKEIQK 223
Score = 98.8 bits (245), Expect = 2e-23
Identities = 75/267 (28%), Positives = 112/267 (41%), Gaps = 63/267 (23%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ + + + TI + ++ PT IQ +P A+L +DI+ A+TGSGKT AF IP
Sbjct: 20 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIP 78
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
I+ +V + N + LILAPTR
Sbjct: 79 IINHLVCQDLNQQRYSKTAY------------------------------PKCLILAPTR 108
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELAIQ+ + TP++ V GG T Q+R + H+LVATPGRL +FI+
Sbjct: 109 ELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKI 168
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
L Y+V+DE DRM++ G P+++ I++ M
Sbjct: 169 S---LEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN------------------ 207
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKN 416
RQT +FSAT ++
Sbjct: 208 -----------RQTLMFSATFPKEIQK 223
Score = 39.9 bits (92), Expect = 0.001
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
LILAPTRELAIQ+ + TP++ V GG T Q+R + H+LVATPG L
Sbjct: 101 CLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLV 160
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
S+E+ + + + II E P +R+ + S
Sbjct: 161 DFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKII--EESNMPSGINRQTLMFS 214
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 108 bits (271), Expect = 3e-26
Identities = 43/393 (10%), Positives = 92/393 (23%), Gaps = 125/393 (31%)
Query: 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861
++ + G+GKT + I+ + +
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--------------------------- 37
Query: 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921
L LILAPTR +A +++ + + T
Sbjct: 38 --------------GLRTLILAPTRVVAAEMEEAL-----------RGLPIRYQTPAIRA 72
Query: 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 981
+ + + + N +++DE + + +
Sbjct: 73 EHTGREIVDLMCHATFTMRLLSPI----RVPNYNLIIMDEAHFTDPASIA--ARGYISTR 126
Query: 982 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 1041
+AT S +D + I+
Sbjct: 127 VEMG---EAAGIFMTATPPGS---------------------------RDPFPQSNAPIM 156
Query: 1042 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 1101
D +I + + + ++ G+T+ F SI + + L
Sbjct: 157 DEEREI--------------PERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNG 202
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP---------GIEHVIHY 1152
+ L + +K D ++ TD++ G + ++ VI
Sbjct: 203 KKVIQLSRKTFDSEYIKTRTNDWDF----VVTTDISEMGANFKAERVIDPRRCMKPVILT 258
Query: 1153 HVPRTSEI----------YIHRSGRTARANNEG 1175
+ R GR R
Sbjct: 259 DGEERVILAGPMPVTHSSAAQRRGRVGRNPKNE 291
Score = 73.0 bits (178), Expect = 3e-14
Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 23/135 (17%)
Query: 537 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 596
+ ++ G+T+ F SI + + L + L + +K D
Sbjct: 171 HEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDF--- 227
Query: 597 ILLATDVAARGLDIP---------GIEHVIHYHVPRTSEI----------YIHRSGRTAR 637
++ TD++ G + ++ VI + R GR R
Sbjct: 228 -VVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGR 286
Query: 638 ANNEGLTVVLIESDE 652
+ +
Sbjct: 287 NPKNENDQYIYMGEP 301
Score = 60.3 bits (145), Expect = 4e-10
Identities = 18/170 (10%), Positives = 40/170 (23%), Gaps = 56/170 (32%)
Query: 185 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 244
++ + G+GKT + I+ + +
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--------------------------- 37
Query: 245 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 304
L LILAPTR +A +++ + + T
Sbjct: 38 --------------GLRTLILAPTRVVAAEMEEAL-----------RGLPIRYQTPAIRA 72
Query: 305 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 354
+ + + + N +++DE +
Sbjct: 73 EHTGREIVDLMCHATFTMRLLSPI----RVPNYNLIIMDEAHFTDPASIA 118
Score = 34.1 bits (77), Expect = 0.11
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 11/61 (18%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
LILAPTR +A +++ + + T + + +
Sbjct: 41 TLILAPTRVVAAEMEEAL-----------RGLPIRYQTPAIRAEHTGREIVDLMCHATFT 89
Query: 1416 L 1416
+
Sbjct: 90 M 90
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 105 bits (264), Expect = 3e-25
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 15/122 (12%)
Query: 531 EKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN-- 586
E Y L+ GR L+FC+S L L L + + + ++ +
Sbjct: 21 EIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGD 80
Query: 587 --------LDRFRDQNNSILLATDVAARG---LDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
L + ++ + + + +P+ + R GRT
Sbjct: 81 VVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRT 140
Query: 636 AR 637
R
Sbjct: 141 GR 142
Score = 105 bits (264), Expect = 3e-25
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 15/122 (12%)
Query: 1064 EKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN-- 1119
E Y L+ GR L+FC+S L L L + + + ++ +
Sbjct: 21 EIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGD 80
Query: 1120 --------LDRFRDQNNSILLATDVAARG---LDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
L + ++ + + + +P+ + R GRT
Sbjct: 81 VVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRT 140
Query: 1169 AR 1170
R
Sbjct: 141 GR 142
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 98.0 bits (243), Expect = 2e-23
Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 51/236 (21%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++RA+ GF+ P+++Q +P + D++ A++G GKT F + L +
Sbjct: 6 FLLKPELLRAIVDCGFEHPSEVQHECIP-QAILGMDVLCQAKSGMGKTAVFVLATLQQLE 64
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
L++ TRELA Q+
Sbjct: 65 PVTGQV---------------------------------------SVLVMCHTRELAFQI 85
Query: 893 QNHILDAGKYTPV-KVACVVGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHFHLTE 950
KY P KVA GG+S +K +L K PHI+V TPGR+ + +L
Sbjct: 86 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK- 144
Query: 951 LYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
I + ++DE D+M+E +++ I T +Q +FSATL+ ++
Sbjct: 145 --HIKHFILDECDKMLEQLDMRRDVQEIFRM-----TPHEKQVMMFSATLSKEIRP 193
Score = 88.0 bits (217), Expect = 4e-20
Identities = 58/263 (22%), Positives = 97/263 (36%), Gaps = 77/263 (29%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++RA+ GF+ P+++Q +P + D++ A++G GKT F + L +
Sbjct: 6 FLLKPELLRAIVDCGFEHPSEVQHECIP-QAILGMDVLCQAKSGMGKTAVFVLATLQQLE 64
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
L++ TRELA Q+
Sbjct: 65 PVTGQV---------------------------------------SVLVMCHTRELAFQI 85
Query: 276 QNHILDAGKYTPV-KVACVVGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHFHLTE 333
KY P KVA GG+S +K +L K PHI+V TPGR+ + +L
Sbjct: 86 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK- 144
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
I + ++DE D+M+E +++ I
Sbjct: 145 --HIKHFILDECDKMLEQL---------------------------DMRRDVQEIFRM-- 173
Query: 394 MTETSQPRQTFVFSATLTHSLKN 416
T +Q +FSATL+ ++
Sbjct: 174 ---TPHEKQVMMFSATLSKEIRP 193
Score = 36.0 bits (82), Expect = 0.016
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPV-KVACVVGGMSTEKQLRILNKC-PHILVATPGA 1413
L++ TRELA Q+ KY P KVA GG+S +K +L K PHI+V TPG
Sbjct: 72 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGR 131
Query: 1414 L 1414
+
Sbjct: 132 I 132
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 98.4 bits (244), Expect = 2e-23
Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 53/253 (20%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
++++ NE + + N+ E+++R +Y GF+ P+ IQ + + D++ A
Sbjct: 2 VIESNWNEIV----DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAIL-PCIKGYDVIAQA 56
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
++G+GKT F I IL I L+
Sbjct: 57 QSGTGKTATFAISILQQIELDLKATQ---------------------------------- 82
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVA 932
AL+LAPTRELA Q+Q ++ G Y G + ++ + PHI+V
Sbjct: 83 -----ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 137
Query: 933 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT 992
TPGR+++ + + I V+DE D M+ G ++ +I + + Q
Sbjct: 138 TPGRVFDMLNRRYLSPK---YIKMFVLDEADEMLSRGFKDQIYDIFQK-----LNSNTQV 189
Query: 993 FVFSATLTHSLKN 1005
+ SAT+ +
Sbjct: 190 VLLSATMPSDVLE 202
Score = 88.0 bits (217), Expect = 7e-20
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 53/249 (21%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
++++ NE + + N+ E+++R +Y GF+ P+ IQ + + D++ A
Sbjct: 2 VIESNWNEIV----DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAIL-PCIKGYDVIAQA 56
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
++G+GKT F I IL I L+
Sbjct: 57 QSGTGKTATFAISILQQIELDLKATQ---------------------------------- 82
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVA 315
AL+LAPTRELA Q+Q ++ G Y G + ++ + PHI+V
Sbjct: 83 -----ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 137
Query: 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT 375
TPGR+++ + + I V+DE D M+ G ++ +I + + Q
Sbjct: 138 TPGRVFDMLNRRYLSPK---YIKMFVLDEADEMLSRGFKDQIYDIFQK-----LNSNTQV 189
Query: 376 MIESGHFPE 384
++ S P
Sbjct: 190 VLLSATMPS 198
Score = 31.4 bits (70), Expect = 0.65
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVATPGAL 1414
AL+LAPTRELA Q+Q ++ G Y G + ++ + PHI+V TPG +
Sbjct: 83 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 142
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 98.0 bits (243), Expect = 2e-23
Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 49/252 (19%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
+V+ +E++ V + + E ++R +Y GF+ P+ IQ + ++ +D++ +
Sbjct: 4 KVEFETSEEVDV-TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIK-QIIKGRDVIAQS 61
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
++G+GKT F I +L + ++
Sbjct: 62 QSGTGKTATFSISVLQCLDIQVRETQ---------------------------------- 87
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
ALILAPTRELA+Q+Q +L G Y V+ +GG + + +R L+ H++ T
Sbjct: 88 -----ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 142
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGR+++ I+ I LV+DE D M+ G ++ ++ Q
Sbjct: 143 PGRVFDMIRRRSLR---TRAIKMLVLDEADEMLNKGFKEQIYDVYRY-----LPPATQVV 194
Query: 994 VFSATLTHSLKN 1005
+ SATL H +
Sbjct: 195 LISATLPHEILE 206
Score = 87.2 bits (215), Expect = 1e-19
Identities = 60/280 (21%), Positives = 109/280 (38%), Gaps = 77/280 (27%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
+V+ +E++ V + + E ++R +Y GF+ P+ IQ + ++ +D++ +
Sbjct: 4 KVEFETSEEVDV-TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIK-QIIKGRDVIAQS 61
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
++G+GKT F I +L + ++
Sbjct: 62 QSGTGKTATFSISVLQCLDIQVRETQ---------------------------------- 87
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
ALILAPTRELA+Q+Q +L G Y V+ +GG + + +R L+ H++ T
Sbjct: 88 -----ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 142
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+++ I+ I LV+DE D M+ G ++ ++
Sbjct: 143 PGRVFDMIRRRSLR---TRAIKMLVLDEADEMLNKGFKEQIYDVYRY------------- 186
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416
Q + SATL H +
Sbjct: 187 --------------------LPPATQVVLISATLPHEILE 206
Score = 32.1 bits (72), Expect = 0.35
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALILAPTRELA+Q+Q +L G Y V+ +GG + + +R L+ H++ TPG
Sbjct: 88 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPG 144
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 97.2 bits (241), Expect = 3e-23
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 52/248 (20%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
+N + + + ++ + E ++R ++ GF+ P+ IQ + ++ D++ A++G+
Sbjct: 3 TNYDKV---VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGT 58
Query: 818 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 877
GKT F I L I ++ P
Sbjct: 59 GKTGTFSIAALQRIDTSVKAP--------------------------------------- 79
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L I+V TPGR+
Sbjct: 80 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRV 138
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
++ IQ F KI ++DE D M+ SG ++ I Q + SA
Sbjct: 139 FDNIQRRRFRTD---KIKMFILDEADEMLSSGFKEQIYQIFTL-----LPPTTQVVLLSA 190
Query: 998 TLTHSLKN 1005
T+ + +
Sbjct: 191 TMPNDVLE 198
Score = 86.4 bits (213), Expect = 2e-19
Identities = 59/276 (21%), Positives = 104/276 (37%), Gaps = 80/276 (28%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
+N + + + ++ + E ++R ++ GF+ P+ IQ + ++ D++ A++G+
Sbjct: 3 TNYDKV---VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGT 58
Query: 201 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 260
GKT F I L I ++ P
Sbjct: 59 GKTGTFSIAALQRIDTSVKAP--------------------------------------- 79
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L I+V TPGR+
Sbjct: 80 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRV 138
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
++ IQ F KI ++DE D M+ SG ++ I
Sbjct: 139 FDNIQRRRFRTD---KIKMFILDEADEMLSSGFKEQIYQIFTL----------------- 178
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416
Q + SAT+ + +
Sbjct: 179 ----------------LPPTTQVVLLSATMPNDVLE 198
Score = 29.0 bits (64), Expect = 3.1
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L I+V TPG
Sbjct: 81 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPG 136
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 94.5 bits (234), Expect = 7e-22
Identities = 38/249 (15%), Positives = 90/249 (36%), Gaps = 24/249 (9%)
Query: 1059 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
+ +DE S L + + +++ + + + + L + +
Sbjct: 7 VAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKG 60
Query: 1119 NLDRFRDQNNSILLAT----DVAARGLDIP-GIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
+ ++F + L+ T RGLD+P I + P + +
Sbjct: 61 DYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSP 116
Query: 1174 EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIK 1233
+ + L+ + ++ ++E+ +D + E + ++ K AK + E ++
Sbjct: 117 QMVKLLAYLYRNVDEIERLLPAVERHID----EVREILKKVMGKERPQAKDVVVREGEVI 172
Query: 1234 KNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF---PIDESV 1290
++ SGRT+R GLT S + ++ ++ ++ L D IDE
Sbjct: 173 FPDLRTYIQGSGRTSRLFAGGLTKGA--SFLLEDDSELLSAFIERAKLYDIEFKSIDEVD 230
Query: 1291 LSLIKKRID 1299
+ + +D
Sbjct: 231 FEKLSRELD 239
Score = 87.5 bits (216), Expect = 2e-19
Identities = 23/222 (10%), Positives = 67/222 (30%), Gaps = 16/222 (7%)
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
+ +DE S L + + +++ + + + + L + +
Sbjct: 7 VAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKG 60
Query: 586 NLDRFRDQNNSILLAT----DVAARGLDIP-GIEHVIHYHVPRTSEIYIHRSGRTARANN 640
+ ++F + L+ T RGLD+P I + P + +
Sbjct: 61 DYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSP 116
Query: 641 EGLTVVLIESDEIPLKTKF-NLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQN 699
+ + ++ + + E +E E + K V ++ ++
Sbjct: 117 QMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDL 176
Query: 700 PSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKK 741
+ ++ S ++ + ++ D ++ K
Sbjct: 177 RTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 218
Score = 30.9 bits (69), Expect = 0.95
Identities = 16/80 (20%), Positives = 28/80 (35%)
Query: 618 HYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADK 677
+ YI SGRT+R GLT E + E + E D+
Sbjct: 169 GEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDE 228
Query: 678 EKTEDINVTVSSKKKKLKRK 697
E ++ + + + +R+
Sbjct: 229 VDFEKLSRELDESRDRYRRR 248
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 89.6 bits (221), Expect = 1e-20
Identities = 52/238 (21%), Positives = 107/238 (44%), Gaps = 49/238 (20%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
E+ + + ++ +++ G++ P+ IQ +P L+ +DI+ A+ G+GK+ A+ IP+L
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIP-IALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
+ K ++ + A+++ PTREL
Sbjct: 63 ERLDLK---------------------------------------KDNIQAMVIVPTREL 83
Query: 889 AIQVQNHILDAGKY-TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
A+QV + K+ KV GG + + L+ H+++ATPGR+ + I+ G
Sbjct: 84 ALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 143
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+ + +V+DE D+++ +++I+ + RQ ++SAT S++
Sbjct: 144 ---VDHVQMIVLDEADKLLSQDFVQIMEDIILT-----LPKNRQILLYSATFPLSVQK 193
Score = 78.8 bits (193), Expect = 6e-17
Identities = 53/266 (19%), Positives = 108/266 (40%), Gaps = 77/266 (28%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
E+ + + ++ +++ G++ P+ IQ +P L+ +DI+ A+ G+GK+ A+ IP+L
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIP-IALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
+ K ++ + A+++ PTREL
Sbjct: 63 ERLDLK---------------------------------------KDNIQAMVIVPTREL 83
Query: 272 AIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
A+QV + K KV GG + + L+ H+++ATPGR+ + I+ G
Sbjct: 84 ALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 143
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
+ + +V+DE D+++ +++I+ + P+
Sbjct: 144 ---VDHVQMIVLDEADKLLSQDFVQIMEDIILTL-------PKN---------------- 177
Query: 391 RVTMTETSQPRQTFVFSATLTHSLKN 416
RQ ++SAT S++
Sbjct: 178 ----------RQILLYSATFPLSVQK 193
Score = 31.1 bits (69), Expect = 0.69
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 1351 RYSWDALILAPTRELAIQVQNHILDAGKY-TPVKVACVVGGMSTEKQLRILNKCPHILVA 1409
+ + A+++ PTRELA+QV + K+ KV GG + + L+ H+++A
Sbjct: 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIA 128
Query: 1410 TPGAL 1414
TPG +
Sbjct: 129 TPGRI 133
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 90.3 bits (223), Expect = 4e-20
Identities = 48/273 (17%), Positives = 95/273 (34%), Gaps = 17/273 (6%)
Query: 929 ILVATPGRLWEFIQLGHFHLTELYK--INYLVIDETDRMIESGHFPELKNILDRVTMTET 986
+ V P E +L L + K +++ + I I++
Sbjct: 7 VRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGN 66
Query: 987 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 1046
R ++ A L +++ L + Q S + + + S +I
Sbjct: 67 HDLRGLLLYHAMAL-KLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 125
Query: 1047 IGITKTLTESKILC----KHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLK 1101
L ++K + K D+ + + + + +VF N + K++ L
Sbjct: 126 KKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG 185
Query: 1102 CSPLPLHAS--------MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
++QR++ LD F ++L+AT V GLD+P ++ V+ Y
Sbjct: 186 IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYE 245
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
++ I R GRT R G ++L+
Sbjct: 246 PVPSAIRSIQRRGRTGRH-MPGRVIILMAKGTR 277
Score = 86.5 bits (213), Expect = 8e-19
Identities = 44/245 (17%), Positives = 86/245 (35%), Gaps = 24/245 (9%)
Query: 425 SKSKKVSKGDPS--IKRLQDLLNIKSPKIVDLTEKIGITKTLTES-KILCKHDEKDSYLY 481
S S + K + + + + + + + L + L + ++L Y
Sbjct: 41 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAY 100
Query: 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC----KHDEKDSYLY 537
L EE + S +I L ++K + K D+ +
Sbjct: 101 IK-------KLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIR 153
Query: 538 YFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS--------MNQRQRLKNLD 588
+ + + +VF N + K++ L ++QR++ LD
Sbjct: 154 EQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILD 213
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
F ++L+AT V GLD+P ++ V+ Y ++ I R GRT R G ++L+
Sbjct: 214 EFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MPGRVIILM 272
Query: 649 ESDEI 653
Sbjct: 273 AKGTR 277
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 87.6 bits (216), Expect = 1e-19
Identities = 35/240 (14%), Positives = 62/240 (25%), Gaps = 62/240 (25%)
Query: 780 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 839
++K P IQ M +L ++ A TG GKT L
Sbjct: 33 FVEFFRKCVGEPRAIQKMWAK-RILRKESFAATAPTGVGKTSFGLAMSL----------- 80
Query: 840 EEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDA 899
++ PT L IQ I
Sbjct: 81 -------------------------------FLALKGKRCYVIFPTSLLVIQAAETIRKY 109
Query: 900 GKYTPVKVACVVGG------MSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
+ V ++G ++ + I++ T L + H EL
Sbjct: 110 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK-------HYRELGH 162
Query: 954 INYLVIDETDRMIESGH----FPELKNILDRVT--MTETSQPRQTFVFSATLTHSLKNSL 1007
+++ +D+ D ++++ L + V +AT K L
Sbjct: 163 FDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAEL 222
Score = 85.0 bits (209), Expect = 8e-19
Identities = 39/262 (14%), Positives = 69/262 (26%), Gaps = 78/262 (29%)
Query: 163 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 222
++K P IQ M +L ++ A TG GKT L
Sbjct: 33 FVEFFRKCVGEPRAIQKMWAK-RILRKESFAATAPTGVGKTSFGLAMSL----------- 80
Query: 223 EEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDA 282
++ PT L IQ I
Sbjct: 81 -------------------------------FLALKGKRCYVIFPTSLLVIQAAETIRKY 109
Query: 283 GKYTPVKVACVVGG------MSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
+ V ++G ++ + I++ T L + H EL
Sbjct: 110 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK-------HYRELGH 162
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396
+++ +D+ D ++++ KN+ + + G +LK
Sbjct: 163 FDFIFVDDVDAILKAS-----KNVDKLLHLL------------GFHYDLKTKSWV----- 200
Query: 397 TSQPRQTFVFSATLTHSLKNSL 418
V +AT K L
Sbjct: 201 GEARGCLMVSTATAKKGKKAEL 222
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 206
Score = 84.7 bits (208), Expect = 6e-19
Identities = 59/233 (25%), Positives = 96/233 (41%), Gaps = 48/233 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++ +++ GF+ P+ IQ +P + +DI+ A+ G+GKT AF IP L +
Sbjct: 6 FYLKRELLMGIFEAGFEKPSPIQEEAIP-VAITGRDILARAKNGTGKTAAFVIPTLEKVK 64
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
K NK+ ALI+ PTRELA+Q
Sbjct: 65 PK---------------------------------------LNKIQALIMVPTRELALQT 85
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ GK+ + GG + + LN+ HILV TPGR+ + L
Sbjct: 86 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVAD---LS 142
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+ ++DE D+M+ ++ IL Q+ +FSAT ++K
Sbjct: 143 DCSLFIMDEADKMLSRDFKTIIEQILSF-----LPPTHQSLLFSATFPLTVKE 190
Score = 73.9 bits (180), Expect = 3e-15
Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 76/261 (29%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++ +++ GF+ P+ IQ +P + +DI+ A+ G+GKT AF IP L +
Sbjct: 6 FYLKRELLMGIFEAGFEKPSPIQEEAIP-VAITGRDILARAKNGTGKTAAFVIPTLEKVK 64
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
K NK+ ALI+ PTRELA+Q
Sbjct: 65 PK---------------------------------------LNKIQALIMVPTRELALQT 85
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ GK+ + GG + + LN+ HILV TPGR+ + L
Sbjct: 86 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVAD---LS 142
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ ++DE D+M+ ++ IL
Sbjct: 143 DCSLFIMDEADKMLSRDFKTIIEQILSF-------------------------------- 170
Query: 396 ETSQPRQTFVFSATLTHSLKN 416
Q+ +FSAT ++K
Sbjct: 171 -LPPTHQSLLFSATFPLTVKE 190
Score = 28.8 bits (63), Expect = 3.5
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 1352 YSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 1411
ALI+ PTRELA+Q + GK+ + GG + + LN+ HILV TP
Sbjct: 68 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTP 127
Query: 1412 G 1412
G
Sbjct: 128 G 128
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 82.3 bits (202), Expect = 1e-18
Identities = 43/151 (28%), Positives = 75/151 (49%)
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
+ +S + +E+ L + LVFC + K L +L + +H
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGD 61
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
++Q QR K + F+ + IL+ATDV +RG+D+ + VI+YH+P+ E Y+HR GRT R
Sbjct: 62 LSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR 121
Query: 1171 ANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
A +G + +I E + +++ K+
Sbjct: 122 AGKKGKAISIINRREYKKLRYIERAMKLKIK 152
Score = 80.4 bits (197), Expect = 5e-18
Identities = 42/138 (30%), Positives = 69/138 (50%)
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+ +S + +E+ L + LVFC + K L +L + +H
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGD 61
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
++Q QR K + F+ + IL+ATDV +RG+D+ + VI+YH+P+ E Y+HR GRT R
Sbjct: 62 LSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR 121
Query: 638 ANNEGLTVVLIESDEIPL 655
A +G + +I E
Sbjct: 122 AGKKGKAISIINRREYKK 139
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 209
Score = 80.1 bits (196), Expect = 3e-17
Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 44/237 (18%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ +F II A+ F PT+IQ ++P L + +VG ++TG+GKT A+ +PI+
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYLLPIM 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
+ + + A ++
Sbjct: 61 E-----------------------------------KIKPERAEVQAVITAPTRELATQI 85
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
+ K + C++GG +K L LN PHI++ TPGR+ +FI+
Sbjct: 86 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALD- 144
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
++ + LV+DE D M++ G ++ I R + Q VFSAT+ LK
Sbjct: 145 --VHTAHILVVDEADLMLDMGFITDVDQIAAR-----MPKDLQMLVFSATIPEKLKP 194
Score = 69.3 bits (168), Expect = 1e-13
Identities = 56/265 (21%), Positives = 96/265 (36%), Gaps = 72/265 (27%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ +F II A+ F PT+IQ ++P L + +VG ++TG+GKT A+ +PI+
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYLLPIM 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
+ + + A ++
Sbjct: 61 E-----------------------------------KIKPERAEVQAVITAPTRELATQI 85
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
+ K + C++GG +K L LN PHI++ TPGR+ +FI+
Sbjct: 86 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALD- 144
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
++ + LV+DE D M++ G ++ I R
Sbjct: 145 --VHTAHILVVDEADLMLDMGFITDVDQIAAR---------------------------- 174
Query: 392 VTMTETSQPRQTFVFSATLTHSLKN 416
+ Q VFSAT+ LK
Sbjct: 175 -----MPKDLQMLVFSATIPEKLKP 194
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 72.0 bits (176), Expect = 3e-15
Identities = 29/136 (21%), Positives = 41/136 (30%), Gaps = 14/136 (10%)
Query: 522 ESKILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 579
E L E Y L+ GR L+FC+S L L L + + + ++
Sbjct: 11 EEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLD 70
Query: 580 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPG---IEHVIHYHVPRTSEIYIHRSGRTA 636
N D ATD G I+ P+ + R GRT
Sbjct: 71 VSVIPTNGDVVVV-------ATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTG 123
Query: 637 RANNEGLTVVLIESDE 652
R G + E
Sbjct: 124 R-GKPG-IYRFVAPGE 137
Score = 72.0 bits (176), Expect = 3e-15
Identities = 28/131 (21%), Positives = 39/131 (29%), Gaps = 12/131 (9%)
Query: 1055 ESKILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
E L E Y L+ GR L+FC+S L L L + + + ++
Sbjct: 11 EEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLD 70
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPG---IEHVIHYHVPRTSEIYIHRSGRTA 1169
N D ATD G I+ P+ + R GRT
Sbjct: 71 VSVIPTNGDVVVV-------ATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTG 123
Query: 1170 RANNEGLTLVL 1180
R V
Sbjct: 124 RGKPGIYRFVA 134
Score = 27.4 bits (60), Expect = 8.8
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 1237 PDNWLHRSGRTARANNEGLTLVL 1259
+ R GRT R V
Sbjct: 112 AVSRTQRRGRTGRGKPGIYRFVA 134
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 72.3 bits (176), Expect = 5e-15
Identities = 38/155 (24%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 1059 LCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 1117
+ + + K L + ++FCN+ V+ LT L K + +++ + Q++R
Sbjct: 8 VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERD 67
Query: 1118 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 1177
+ FR ++ IL++TD+ ARG+D+ + VI+Y +P E YIHR GR R +G+
Sbjct: 68 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA 127
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVL 1212
+ + ++++ ++ + + + P D + L
Sbjct: 128 INFVTNEDVGAMRELEKFYSTQ--IEELPSDIATL 160
Score = 68.8 bits (167), Expect = 8e-14
Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 526 LCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
+ + + K L + ++FCN+ V+ LT L K + +++ + Q++R
Sbjct: 8 VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERD 67
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
+ FR ++ IL++TD+ ARG+D+ + VI+Y +P E YIHR GR R +G+
Sbjct: 68 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA 127
Query: 645 VVLIESDEIPL 655
+ + ++++
Sbjct: 128 INFVTNEDVGA 138
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 70.4 bits (171), Expect = 5e-14
Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 52/226 (23%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+I + L ++G + Q+ + + + K+++ A T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVE-KVFSGKNLLLAMPTAAGKTLLAEMAMVREA-- 65
Query: 834 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
+L + P R LA +
Sbjct: 66 ----------------------------------------IKGGKSLYVVPLRALAGEKY 85
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
K S ++ I+V T + L + +
Sbjct: 86 ESFKKWEKIGLRIGISTGDYESRDEH----LGDCDIIVTTSEKADS---LIRNRASWIKA 138
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
++ LV+DE + L+ ++ + M ++ + SAT
Sbjct: 139 VSCLVVDEIHLLDSEKRGATLEILVTK--MRRMNKALRVIGLSATA 182
Score = 62.3 bits (150), Expect = 3e-11
Identities = 31/236 (13%), Positives = 71/236 (30%), Gaps = 52/236 (22%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+I + L ++G + Q+ + + + K+++ A T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVE-KVFSGKNLLLAMPTAAGKTLLAEMAMVREA-- 65
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
+L + P R LA +
Sbjct: 66 ----------------------------------------IKGGKSLYVVPLRALAGEKY 85
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
K S ++ I+V T + L + +
Sbjct: 86 ESFKKWEKIGLRIGISTGDYESRDEH----LGDCDIIVTTSEKADS---LIRNRASWIKA 138
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
++ LV+DE + L+ ++ + M ++ + + S P + I + +
Sbjct: 139 VSCLVVDEIHLLDSEKRGATLEILVTK--MRRMNKALRVIGLSATAPNVTEIAEWL 192
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 69.2 bits (168), Expect = 6e-14
Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 1061 KHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
+ + K L + ++FCN+ V LT+ + + +H M Q++R
Sbjct: 17 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESI 76
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
+ FR + +L++TDV ARGLD+P + +I+Y +P E+YIHR GR+ R +G+ +
Sbjct: 77 MKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAIN 136
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1210
+++D+I + + + + + P++ +
Sbjct: 137 FVKNDDIRILRDIEQYYSTQ--IDEMPMNVA 165
Score = 65.7 bits (159), Expect = 9e-13
Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 528 KHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ + K L + ++FCN+ V LT+ + + +H M Q++R
Sbjct: 17 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESI 76
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
+ FR + +L++TDV ARGLD+P + +I+Y +P E+YIHR GR+ R +G+ +
Sbjct: 77 MKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAIN 136
Query: 647 LIESDEIPL 655
+++D+I +
Sbjct: 137 FVKNDDIRI 145
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 200
Score = 69.7 bits (169), Expect = 8e-14
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 1058 ILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
+L + + L ++ + G +++CNS + V+ L S HA + R
Sbjct: 10 MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 69
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
++F+ + I++AT G++ P + V+H+ +PR E Y +GR R
Sbjct: 70 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 129
Query: 1177 TLVLIESDEIPLYIKMF 1193
++ + ++ +
Sbjct: 130 AMLFYDPADMAWLRRCL 146
Score = 68.9 bits (167), Expect = 1e-13
Identities = 27/144 (18%), Positives = 61/144 (42%), Gaps = 1/144 (0%)
Query: 525 ILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+L + + L ++ + G +++CNS + V+ L S HA + R
Sbjct: 10 MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 69
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
++F+ + I++AT G++ P + V+H+ +PR E Y +GR R
Sbjct: 70 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 129
Query: 644 TVVLIESDEIPLKTKFNLQEEENN 667
++ + ++ + ++ +
Sbjct: 130 AMLFYDPADMAWLRRCLEEKPQGQ 153
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 68.3 bits (166), Expect = 2e-13
Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 10/165 (6%)
Query: 536 LYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592
L I + RTLV + + LT L LH+ + +R++ + R
Sbjct: 20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRL 79
Query: 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS--GRTARANNEGLTVVLIES 650
+L+ ++ GLDIP + V + + RS RA V++ +
Sbjct: 80 GKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYA 139
Query: 651 DEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLK 695
D I + +Q E + R +E + + KK+++
Sbjct: 140 DTITKSMEIAIQ-----ETKRRRAIQEEYNRKHGIVPRTVKKEIR 179
Score = 61.7 bits (149), Expect = 3e-11
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 3/106 (2%)
Query: 1069 LYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
L I + RTLV + + LT L LH+ + +R++ + R
Sbjct: 20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRL 79
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+L+ ++ GLDIP + V + + RS
Sbjct: 80 GKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 125
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 68.8 bits (167), Expect = 2e-13
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
Query: 524 KILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+I K L + +H + ++F V R+++ + ++ +
Sbjct: 72 RIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISK-----VFLIPAITHRTSREE 126
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
R + L+ FR ++++ V G+D+P + ++ YI R GR R +
Sbjct: 127 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGK 186
Query: 643 LTVVLI 648
VL
Sbjct: 187 KEAVLY 192
Score = 67.6 bits (164), Expect = 3e-13
Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 6/166 (3%)
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
+ + +++R +D I D + +I K L + +H
Sbjct: 32 QFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH 91
Query: 1077 PG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
+ ++F V R+++ + ++ +R + L+ FR ++++
Sbjct: 92 RKDKIIIFTRHNELVYRISK-----VFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQ 146
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
V G+D+P + ++ YI R GR R + VL
Sbjct: 147 VLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 192
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 67.0 bits (162), Expect = 8e-13
Identities = 34/250 (13%), Positives = 64/250 (25%), Gaps = 55/250 (22%)
Query: 767 MAEWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
MA+ N+ + L + G++ Q ++ +L+ +D + TG GK+L + I
Sbjct: 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIID-TVLSGRDCLVVMPTGGGKSLCYQI 59
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
P ++++P
Sbjct: 60 PA---------------------------------------------LLLNGLTVVVSPL 74
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
L + + G + E +L P RL L H
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH 134
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS--- 1002
+ L +DE + + GH + +AT +
Sbjct: 135 LAH---WNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT-LPFMALTATADDTTRQ 190
Query: 1003 -LKNSLNLKK 1011
+ L L
Sbjct: 191 DIVRLLGLND 200
Score = 57.3 bits (137), Expect = 1e-09
Identities = 32/250 (12%), Positives = 67/250 (26%), Gaps = 53/250 (21%)
Query: 150 MAEWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
MA+ N+ + L + G++ Q ++ +L+ +D + TG GK+L + I
Sbjct: 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIID-TVLSGRDCLVVMPTGGGKSLCYQI 59
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
P ++++P
Sbjct: 60 PA---------------------------------------------LLLNGLTVVVSPL 74
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
L + + G + E +L P RL L H
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH 134
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE--LK 386
+ L +DE + + GH + M + + +
Sbjct: 135 LA---HWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT-LPFMALTATADDTTRQ 190
Query: 387 NILDRVTMTE 396
+I+ + + +
Sbjct: 191 DIVRLLGLND 200
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 61.9 bits (150), Expect = 1e-10
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 539 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598
+IL T F SI + + L S + L+ + + + + +
Sbjct: 31 WILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFI 86
Query: 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 633
LATD+A G ++ +E V+ +
Sbjct: 87 LATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRK 120
Score = 61.9 bits (150), Expect = 1e-10
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+IL T F SI + + L S + L+ + + + + +
Sbjct: 31 WILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFI 86
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166
LATD+A G ++ +E V+ +
Sbjct: 87 LATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRK 120
Score = 29.9 bits (67), Expect = 2.3
Identities = 17/111 (15%), Positives = 30/111 (27%), Gaps = 5/111 (4%)
Query: 1330 IIDDENLIQPNQLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 1389
I D + I L P+ A + + AGK V +
Sbjct: 13 IEDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGK----SVVVLNR 68
Query: 1390 GMSTEKQLRILNKCPHILVATPGALSLKRIDLAKSIEY-LESKIKKNRPDN 1439
+ I K P ++AT A + + + ++ K
Sbjct: 69 KTFEREYPTIKQKKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGR 119
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 58.9 bits (141), Expect = 2e-10
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Query: 1058 ILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
+ K +EK+ L+ + + ++F S+ L QLL + +H M Q +R
Sbjct: 7 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 66
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
L +F+D IL+AT++ RG+DI + +Y +P S+ Y+HR R R +GL
Sbjct: 67 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 126
Query: 1177 TLVLIESDEIPLYIKMFNSLEK--KVDLPDFPIDESVLSLIKK 1217
+ + + K+ N ++ +V++ + P + + S I++
Sbjct: 127 AITFVSDEND---AKILNDVQDRFEVNISELPDEIDISSYIEQ 166
Score = 52.8 bits (125), Expect = 3e-08
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 525 ILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+ K +EK+ L+ + + ++F S+ L QLL + +H M Q +R
Sbjct: 7 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 66
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L +F+D IL+AT++ RG+DI + +Y +P S+ Y+HR R R +GL
Sbjct: 67 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 126
Query: 644 TVVLIESDEIP-----LKTKFNLQEEENNEEEERAE 674
+ + + ++ +F + E +E + +
Sbjct: 127 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISS 162
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 52.0 bits (124), Expect = 6e-08
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
RTLV ++ + LT L LH ++ +R + R + L+ ++
Sbjct: 32 ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 91
Query: 605 ARGLDIPGIEHVIHYHV-----PRTSEIYIHRSGRTAR 637
GLDIP + V R+ I GR AR
Sbjct: 92 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 129
Score = 52.0 bits (124), Expect = 6e-08
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
RTLV ++ + LT L LH ++ +R + R + L+ ++
Sbjct: 32 ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 91
Query: 1138 ARGLDIPGIEHVIHYHV-----PRTSEIYIHRSGRTAR 1170
GLDIP + V R+ I GR AR
Sbjct: 92 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 129
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 201
Score = 47.2 bits (111), Expect = 4e-06
Identities = 31/194 (15%), Positives = 60/194 (30%), Gaps = 41/194 (21%)
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSY--LYYFILQHPGRTLVFCNSISSVKRLTQLLT 1098
V L E + TL + + L + G LVF ++ ++ L+
Sbjct: 2 VPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLS 61
Query: 1099 MLKCSPLP------------------------------LHASMNQRQRLKNLDRFRDQNN 1128
+ + HA + QR D FR N
Sbjct: 62 AITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 121
Query: 1129 SILLATDVAARGLDIPGIEHVIH-------YHVPRTSEIYIHRSGRTARAN--NEGLTLV 1179
+++AT A G+++P ++ Y Y +GR R G ++
Sbjct: 122 KVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAII 181
Query: 1180 LIESDEIPLYIKMF 1193
++ + + +K +
Sbjct: 182 IVGKRDREIAVKRY 195
Score = 44.9 bits (105), Expect = 2e-05
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 41/186 (22%)
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSY--LYYFILQHPGRTLVFCNSISSVKRLTQLLT 565
V L E + TL + + L + G LVF ++ ++ L+
Sbjct: 2 VPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLS 61
Query: 566 MLKCSPLP------------------------------LHASMNQRQRLKNLDRFRDQNN 595
+ + HA + QR D FR N
Sbjct: 62 AITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 121
Query: 596 SILLATDVAARGLDIPGIEHVIH-------YHVPRTSEIYIHRSGRTARAN--NEGLTVV 646
+++AT A G+++P ++ Y Y +GR R G ++
Sbjct: 122 KVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAII 181
Query: 647 LIESDE 652
++ +
Sbjct: 182 IVGKRD 187
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 44.0 bits (102), Expect = 4e-05
Identities = 31/247 (12%), Positives = 69/247 (27%), Gaps = 54/247 (21%)
Query: 783 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842
+ ++ P Q ++ + + TG GKTL + +
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIAEYRLT---------- 49
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 902
+ L+LAPT+ L +Q
Sbjct: 50 -------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNL 78
Query: 903 TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDET 962
P K+ + G S E++ + + I L ++ +V DE
Sbjct: 79 PPEKIVALTGEKSPEERSKAWARAKVI----VATPQTIENDLLAGRISLEDVSLIVFDEA 134
Query: 963 DRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK--GQSKSKKVS 1020
R + + + + R ++ +A+ + + + + G + S
Sbjct: 135 HRAVGNYAYVFIAREYKR-----QAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRS 189
Query: 1021 KGDPSIK 1027
+ P ++
Sbjct: 190 ENSPDVR 196
Score = 34.8 bits (78), Expect = 0.044
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 166 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ ++ P Q ++ + + TG GKTL +
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIAE 45
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 33.3 bits (76), Expect = 0.11
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606
LV ++ + + +++LL L+A ++R+ + Q ++ +AT++A R
Sbjct: 37 VLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE--AQIIEEAGQKGAVTIATNMAGR 94
Query: 607 GLDI--------PGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
G DI G V+ + I GR+ R + G
Sbjct: 95 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPG 138
Score = 33.3 bits (76), Expect = 0.11
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
LV ++ + + +++LL L+A ++R+ + Q ++ +AT++A R
Sbjct: 37 VLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE--AQIIEEAGQKGAVTIATNMAGR 94
Query: 1140 GLDI--------PGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
G DI G V+ + I GR+ R + G
Sbjct: 95 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPG 138
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 31.8 bits (71), Expect = 0.61
Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 7/161 (4%)
Query: 1055 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
E ++ K D L + ++ N ++ +L + + L +M+ +
Sbjct: 96 EPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIK 155
Query: 1115 QRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR- 1170
+R K ++RF + ++ +L++ GL++ G ++ + R R
Sbjct: 156 KRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 215
Query: 1171 -ANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1210
L+ + I K+ K L +DE
Sbjct: 216 GQKKTCYIYRLLSTGTI--EEKILQRQAHKKALSSCVVDEE 254
Score = 31.1 bits (69), Expect = 1.1
Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Query: 522 ESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
E ++ K D L + ++ N ++ +L + + L +M+ +
Sbjct: 96 EPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIK 155
Query: 582 QRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+R K ++RF + ++ +L++ GL++ G ++ + R R
Sbjct: 156 KRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWR 214
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus
thermophilus [TaxId: 274]}
Length = 104
Score = 27.1 bits (60), Expect = 6.4
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 474 DEKDSYLYYFILQHPGRTL-CEEIQDLLNIKSPKIVDLTEKIGIT 517
+ S ++ +HP RTL EE+++ ++ ++ + G
Sbjct: 57 EGHKSLAFHLRFRHPKRTLRDEEVEEAVS----RVAEALRARGFG 97
>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68
[TaxId: 33708]}
Length = 106
Score = 26.9 bits (59), Expect = 6.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 581
H ++ YL + L P C+ S++KR +L L C +H +MNQ+
Sbjct: 15 HAPREDYLNIYNLCRPKIFCALCDGRSAMKR--PVLITLAC----MHLTMNQK 61
Score = 26.9 bits (59), Expect = 6.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 1062 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114
H ++ YL + L P C+ S++KR +L L C +H +MNQ+
Sbjct: 15 HAPREDYLNIYNLCRPKIFCALCDGRSAMKR--PVLITLAC----MHLTMNQK 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.360
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,290,628
Number of extensions: 260553
Number of successful extensions: 1037
Number of sequences better than 10.0: 1
Number of HSP's gapped: 997
Number of HSP's successfully gapped: 141
Length of query: 1493
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1396
Effective length of database: 1,075,786
Effective search space: 1501797256
Effective search space used: 1501797256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.8 bits)