BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16312
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 3 DNCESILSQAEPP-EDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQV 61
D E L++A DT + YE+ +D+ HLP ++S DL S+LALH+V ++ F+ V
Sbjct: 73 DLSEKXLARARAAGPDTGITYERADLDKLHLP--QDSFDLAYSSLALHYVEDVARLFRTV 130
Query: 62 LKCLRQDGVFLAS 74
+ L G F+ S
Sbjct: 131 HQALSPGGHFVFS 143
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 30 EHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFL 72
E LPF ++S D++ A H +++ ++V + L+QDG FL
Sbjct: 79 ESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 15 PEDTEVIYEKKFVDEEHLPFAE------NSVDLLISNLALHWVNNLPGCFQQVLKCLRQD 68
P + V + K F+ E+L AE +SVD++ISN + N F+++ + LR
Sbjct: 139 PSRSNVRFLKGFI--ENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDG 196
Query: 69 G-VFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGF-NMLTI 126
G ++ + ++ L E + E GG + D L+ AGF ++ +
Sbjct: 197 GELYFSDVYADRRLSEAAQQDPILYGECLGGA-------LYLEDFRRLVAEAGFRDVRLV 249
Query: 127 DVDEIVIHYPSMFELMWDLKGMGESNACVNRSLHFPLELQYASAAIY 173
V + + P + +L+ D++ + C + Y +A Y
Sbjct: 250 SVGPVDVSDPQLRKLVPDVQFYSCTFRCFKVATLEATREDYGQSATY 296
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 3 DNCESILSQAEPPEDTEVI-YEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQV 61
D E +L++A+ + V+ YE+K + E + ++ ++++S+LALH++ + ++V
Sbjct: 74 DLSERMLTEAKRKTTSPVVCYEQKAI--EDIAIEPDAYNVVLSSLALHYIASFDDICKKV 131
Query: 62 LKCLRQDGVFLASI 75
L+ G F+ S+
Sbjct: 132 YINLKSSGSFIFSV 145
>pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
pdb|3NVA|B Chain B, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
Length = 535
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 97 GGVASHISPFTQIRDVGSLLTRAGFNMLTIDVD 129
GGV S + T + +G LL R G+N+ + +D
Sbjct: 10 GGVLSSVGKGTLVASIGMLLKRRGYNVTAVKID 42
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 30 EHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS 74
E+L + SVD +IS LA+H ++L FQ+ + +R + L +
Sbjct: 86 ENLALPDKSVDGVISILAIHHFSHLEKSFQEXQRIIRDGTIVLLT 130
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 39 VDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGE 79
+D + SN LHWV + + L+ G F+A FGG+
Sbjct: 118 LDAVFSNAXLHWVKEPEAAIASIHQALKSGGRFVAE-FGGK 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,942,353
Number of Sequences: 62578
Number of extensions: 346821
Number of successful extensions: 688
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 8
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)