Query psy16312
Match_columns 245
No_of_seqs 198 out of 2058
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 18:09:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2940|consensus 100.0 9.1E-36 2E-40 233.7 15.3 222 1-229 100-321 (325)
2 PRK10258 biotin biosynthesis p 99.9 2.9E-23 6.2E-28 172.4 19.7 180 2-204 70-250 (251)
3 TIGR02072 BioC biotin biosynth 99.8 1.6E-19 3.5E-24 148.2 18.8 177 2-204 64-240 (240)
4 PRK14103 trans-aconitate 2-met 99.8 1.1E-19 2.4E-24 151.2 15.5 190 2-206 59-255 (255)
5 COG4106 Tam Trans-aconitate me 99.8 5.3E-19 1.1E-23 138.4 12.1 191 2-205 60-256 (257)
6 PRK01683 trans-aconitate 2-met 99.8 4.1E-18 8.9E-23 142.0 14.8 192 2-205 61-257 (258)
7 COG2226 UbiE Methylase involve 99.8 6.6E-19 1.4E-23 143.0 9.3 124 2-125 81-221 (238)
8 PLN02232 ubiquinone biosynthes 99.8 2.2E-18 4.9E-23 133.4 9.1 125 2-126 3-145 (160)
9 PF01209 Ubie_methyltran: ubiE 99.7 6.2E-19 1.3E-23 144.2 4.2 126 2-127 78-219 (233)
10 PRK08317 hypothetical protein; 99.7 1.5E-15 3.3E-20 124.5 18.3 184 2-205 50-241 (241)
11 PLN02233 ubiquinone biosynthes 99.7 1E-16 2.2E-21 133.7 10.2 126 2-127 104-247 (261)
12 KOG1540|consensus 99.7 2.5E-16 5.4E-21 126.4 9.9 124 2-125 136-278 (296)
13 PTZ00098 phosphoethanolamine N 99.6 8.8E-15 1.9E-19 122.2 10.1 119 2-127 81-201 (263)
14 PLN02244 tocopherol O-methyltr 99.6 5.2E-15 1.1E-19 127.9 8.3 120 2-127 147-277 (340)
15 PLN02396 hexaprenyldihydroxybe 99.6 1.1E-14 2.4E-19 124.3 10.1 126 2-127 159-288 (322)
16 PF08241 Methyltransf_11: Meth 99.5 4.2E-15 9E-20 104.3 4.1 71 2-73 25-95 (95)
17 TIGR02752 MenG_heptapren 2-hep 99.5 7E-14 1.5E-18 114.6 8.3 127 2-128 76-218 (231)
18 PRK11873 arsM arsenite S-adeno 99.5 6.3E-13 1.4E-17 111.7 12.2 119 2-128 108-230 (272)
19 PLN02336 phosphoethanolamine N 99.5 2.3E-13 4.9E-18 123.0 10.0 115 2-127 295-413 (475)
20 PRK11036 putative S-adenosyl-L 99.4 4.2E-13 9E-18 111.7 9.5 125 1-127 71-206 (255)
21 PLN02490 MPBQ/MSBQ methyltrans 99.4 5.3E-13 1.1E-17 114.4 10.3 113 2-127 143-255 (340)
22 COG2227 UbiG 2-polyprenyl-3-me 99.4 9.9E-13 2.2E-17 105.6 6.8 126 2-127 87-214 (243)
23 KOG4300|consensus 99.4 1.9E-12 4.2E-17 101.1 7.3 122 1-127 104-231 (252)
24 PF13489 Methyltransf_23: Meth 99.3 1E-12 2.2E-17 101.2 5.3 111 2-125 50-160 (161)
25 PRK15068 tRNA mo(5)U34 methylt 99.3 4.9E-12 1.1E-16 108.5 8.4 121 2-128 151-274 (322)
26 PRK05785 hypothetical protein; 99.3 9.1E-12 2E-16 101.7 9.2 112 2-120 80-204 (226)
27 TIGR00452 methyltransferase, p 99.3 1.3E-11 2.8E-16 105.1 8.7 120 2-128 150-273 (314)
28 smart00828 PKS_MT Methyltransf 99.3 1.6E-11 3.5E-16 100.1 8.7 112 2-127 29-143 (224)
29 PRK00216 ubiE ubiquinone/menaq 99.3 3.9E-11 8.5E-16 98.4 11.0 127 2-128 82-225 (239)
30 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 3.8E-11 8.1E-16 97.5 10.8 126 2-127 70-209 (223)
31 PRK11088 rrmA 23S rRNA methylt 99.2 4.3E-10 9.2E-15 94.5 15.2 117 2-145 118-234 (272)
32 TIGR00740 methyltransferase, p 99.2 3.3E-11 7.1E-16 99.3 8.1 118 2-123 85-222 (239)
33 PRK15451 tRNA cmo(5)U34 methyl 99.2 2.7E-11 5.9E-16 100.3 7.0 72 2-75 88-164 (247)
34 PRK06202 hypothetical protein; 99.2 1.6E-10 3.5E-15 94.8 10.7 123 2-128 94-222 (232)
35 PF08242 Methyltransf_12: Meth 99.2 9.7E-12 2.1E-16 88.3 1.5 70 2-71 26-99 (99)
36 KOG1270|consensus 99.2 6.9E-11 1.5E-15 95.8 6.5 121 2-125 117-246 (282)
37 TIGR01983 UbiG ubiquinone bios 99.1 3.4E-10 7.3E-15 92.2 10.4 126 2-127 73-202 (224)
38 KOG3010|consensus 99.1 5.8E-10 1.3E-14 89.4 11.1 76 1-77 60-139 (261)
39 PRK11207 tellurite resistance 99.1 1.9E-10 4.1E-15 92.1 6.9 107 2-127 58-169 (197)
40 PF13847 Methyltransf_31: Meth 99.1 5.5E-11 1.2E-15 91.2 3.2 75 2-77 34-112 (152)
41 PRK05134 bifunctional 3-demeth 99.1 1.3E-09 2.9E-14 89.3 10.8 126 2-127 76-204 (233)
42 smart00138 MeTrc Methyltransfe 99.1 2.9E-10 6.2E-15 95.0 6.5 74 2-75 138-242 (264)
43 PLN02336 phosphoethanolamine N 99.0 6.2E-10 1.3E-14 100.7 6.7 111 2-125 65-179 (475)
44 PF13649 Methyltransf_25: Meth 99.0 7.6E-11 1.6E-15 84.0 -0.1 68 2-69 30-101 (101)
45 TIGR02021 BchM-ChlM magnesium 99.0 1.1E-09 2.5E-14 89.0 6.5 118 2-128 83-206 (219)
46 PF12847 Methyltransf_18: Meth 99.0 4.4E-10 9.6E-15 81.3 3.6 73 2-75 31-111 (112)
47 TIGR02081 metW methionine bios 98.9 7.1E-09 1.5E-13 82.7 10.2 118 2-127 42-166 (194)
48 PRK11705 cyclopropane fatty ac 98.9 4.2E-09 9.2E-14 92.4 8.8 114 2-127 196-311 (383)
49 PF05401 NodS: Nodulation prot 98.9 8.8E-10 1.9E-14 86.4 3.9 76 1-77 70-148 (201)
50 PLN02585 magnesium protoporphy 98.9 1.3E-08 2.8E-13 86.9 10.7 126 2-137 172-308 (315)
51 PRK06922 hypothetical protein; 98.9 4.6E-09 9.9E-14 96.1 7.4 74 2-75 448-537 (677)
52 TIGR02716 C20_methyl_CrtF C-20 98.8 2.5E-08 5.4E-13 85.2 10.2 119 2-126 179-304 (306)
53 TIGR00477 tehB tellurite resis 98.8 2.7E-09 5.8E-14 85.3 3.8 109 2-128 58-169 (195)
54 PF02353 CMAS: Mycolic acid cy 98.8 3.6E-08 7.8E-13 82.6 10.0 116 2-127 91-216 (273)
55 PRK00121 trmB tRNA (guanine-N( 98.8 4.4E-09 9.6E-14 84.5 3.5 75 1-75 69-156 (202)
56 PRK07580 Mg-protoporphyrin IX 98.7 2.4E-08 5.2E-13 81.6 6.9 122 2-132 91-218 (230)
57 KOG2361|consensus 98.7 3.2E-08 6.9E-13 79.5 7.2 127 1-128 102-237 (264)
58 PLN03075 nicotianamine synthas 98.7 1.3E-08 2.9E-13 85.4 5.2 73 2-75 155-233 (296)
59 TIGR00537 hemK_rel_arch HemK-r 98.7 8.3E-08 1.8E-12 75.5 8.6 97 2-128 47-165 (179)
60 PRK12335 tellurite resistance 98.7 1.4E-08 3.1E-13 86.0 4.4 108 2-127 148-258 (287)
61 PF08003 Methyltransf_9: Prote 98.7 1.7E-08 3.6E-13 84.3 3.9 99 22-127 167-266 (315)
62 PRK00107 gidB 16S rRNA methylt 98.6 3.9E-08 8.5E-13 77.9 4.9 70 1-75 74-145 (187)
63 TIGR00091 tRNA (guanine-N(7)-) 98.6 2.6E-08 5.6E-13 79.5 3.4 74 2-75 46-132 (194)
64 COG4976 Predicted methyltransf 98.6 9.9E-09 2.1E-13 81.8 0.9 111 2-128 153-265 (287)
65 KOG1541|consensus 98.6 1.8E-07 3.8E-12 74.3 7.2 73 2-77 78-162 (270)
66 TIGR03587 Pse_Me-ase pseudamin 98.6 9.2E-08 2E-12 76.9 5.7 68 2-75 73-142 (204)
67 PRK04266 fibrillarin; Provisio 98.6 2.6E-07 5.7E-12 75.3 8.0 71 2-75 102-176 (226)
68 COG2230 Cfa Cyclopropane fatty 98.6 1.2E-07 2.6E-12 78.9 5.8 116 2-127 101-222 (283)
69 TIGR00138 gidB 16S rRNA methyl 98.5 1.4E-07 3E-12 74.4 5.8 69 2-75 72-142 (181)
70 PRK11188 rrmJ 23S rRNA methylt 98.5 3.7E-07 8.1E-12 73.7 7.8 65 20-84 91-174 (209)
71 TIGR03840 TMPT_Se_Te thiopurin 98.5 1.1E-06 2.4E-11 71.1 9.7 109 2-128 62-187 (213)
72 PF05891 Methyltransf_PK: AdoM 98.5 1.3E-07 2.7E-12 75.5 3.8 114 1-127 83-200 (218)
73 PF07021 MetW: Methionine bios 98.4 1.1E-06 2.4E-11 68.9 7.9 115 2-127 42-166 (193)
74 PRK08287 cobalt-precorrin-6Y C 98.4 1.3E-06 2.7E-11 69.3 7.9 96 2-130 61-158 (187)
75 TIGR02469 CbiT precorrin-6Y C5 98.4 3.6E-07 7.8E-12 66.9 4.4 71 2-75 49-122 (124)
76 KOG3045|consensus 98.4 1.3E-06 2.8E-11 71.0 7.8 82 20-128 210-291 (325)
77 PF05148 Methyltransf_8: Hypot 98.4 8.8E-07 1.9E-11 70.2 6.6 80 21-127 105-184 (219)
78 PRK10611 chemotaxis methyltran 98.3 4.9E-07 1.1E-11 76.1 4.2 73 2-74 153-261 (287)
79 TIGR03534 RF_mod_PrmC protein- 98.3 2.1E-06 4.5E-11 71.0 7.5 73 2-75 117-217 (251)
80 PRK14967 putative methyltransf 98.3 2.4E-06 5.2E-11 69.6 7.4 73 2-75 65-159 (223)
81 PRK13944 protein-L-isoaspartat 98.3 7.4E-07 1.6E-11 71.7 4.3 68 2-75 103-173 (205)
82 PRK14968 putative methyltransf 98.3 2.4E-06 5.1E-11 67.4 6.8 97 2-127 51-172 (188)
83 KOG1975|consensus 98.3 5.2E-07 1.1E-11 75.5 2.8 77 1-77 145-239 (389)
84 PRK13255 thiopurine S-methyltr 98.3 8.9E-06 1.9E-10 66.1 9.8 109 2-128 65-190 (218)
85 PHA03411 putative methyltransf 98.3 4.2E-06 9E-11 69.6 8.0 96 2-123 94-209 (279)
86 cd02440 AdoMet_MTases S-adenos 98.2 2.3E-06 5.1E-11 59.6 5.5 73 2-74 27-103 (107)
87 PF11968 DUF3321: Putative met 98.2 1.2E-05 2.6E-10 64.2 9.9 85 24-129 87-182 (219)
88 PRK13942 protein-L-isoaspartat 98.2 1.3E-06 2.8E-11 70.7 4.4 68 2-75 107-176 (212)
89 PRK00377 cbiT cobalt-precorrin 98.2 1.7E-06 3.6E-11 69.3 4.8 71 2-75 71-145 (198)
90 PTZ00146 fibrillarin; Provisio 98.2 9.8E-06 2.1E-10 68.1 9.5 67 2-75 163-237 (293)
91 PRK14121 tRNA (guanine-N(7)-)- 98.2 1.3E-06 2.8E-11 76.2 4.2 74 2-75 152-235 (390)
92 TIGR03438 probable methyltrans 98.2 2.7E-06 5.9E-11 72.5 5.9 81 2-82 94-184 (301)
93 PRK09489 rsmC 16S ribosomal RN 98.2 2.2E-06 4.8E-11 74.2 4.9 74 1-76 225-304 (342)
94 TIGR01177 conserved hypothetic 98.2 3.9E-06 8.5E-11 72.5 6.2 74 2-75 210-294 (329)
95 PF03848 TehB: Tellurite resis 98.1 1.4E-06 3E-11 69.0 2.7 111 2-131 58-172 (192)
96 TIGR00080 pimt protein-L-isoas 98.1 3.5E-06 7.6E-11 68.3 4.6 68 2-75 108-177 (215)
97 TIGR00406 prmA ribosomal prote 98.1 4.4E-06 9.6E-11 70.8 5.2 72 1-77 187-261 (288)
98 PF03291 Pox_MCEL: mRNA cappin 98.0 2E-06 4.4E-11 73.9 2.1 77 2-78 91-189 (331)
99 PRK00517 prmA ribosomal protei 98.0 1.5E-05 3.2E-10 66.2 6.7 91 2-128 148-238 (250)
100 TIGR00438 rrmJ cell division p 98.0 2.6E-05 5.7E-10 61.8 7.4 65 20-84 72-155 (188)
101 PRK00312 pcm protein-L-isoaspa 98.0 1E-05 2.2E-10 65.4 4.8 69 2-76 106-176 (212)
102 PRK00811 spermidine synthase; 98.0 6.9E-06 1.5E-10 69.4 3.9 75 1-75 105-191 (283)
103 PRK15001 SAM-dependent 23S rib 98.0 6.6E-06 1.4E-10 72.0 3.7 74 1-75 257-340 (378)
104 PRK01581 speE spermidine synth 97.9 4.7E-05 1E-09 65.8 8.5 75 1-75 179-268 (374)
105 PF05175 MTS: Methyltransferas 97.9 1.2E-05 2.6E-10 62.7 4.4 73 2-75 61-140 (170)
106 PF01739 CheR: CheR methyltran 97.9 1.2E-05 2.5E-10 64.2 3.9 56 20-75 118-175 (196)
107 PF13659 Methyltransf_26: Meth 97.9 2.5E-06 5.4E-11 62.0 -0.4 74 2-75 29-115 (117)
108 PRK09328 N5-glutamine S-adenos 97.9 6.5E-05 1.4E-09 63.0 8.1 73 2-75 138-238 (275)
109 PRK14966 unknown domain/N5-glu 97.9 6.5E-05 1.4E-09 66.2 8.2 72 2-75 281-381 (423)
110 PRK07402 precorrin-6B methylas 97.9 2.4E-05 5.2E-10 62.4 5.0 71 2-76 70-143 (196)
111 TIGR03533 L3_gln_methyl protei 97.9 3.4E-05 7.5E-10 65.2 6.2 73 2-75 151-251 (284)
112 COG4627 Uncharacterized protei 97.8 2E-05 4.3E-10 59.4 3.8 97 22-123 31-133 (185)
113 PF05219 DREV: DREV methyltran 97.8 3.2E-05 6.9E-10 63.5 5.3 67 2-75 122-188 (265)
114 PRK03612 spermidine synthase; 97.8 3.9E-05 8.6E-10 70.2 6.5 75 1-75 326-415 (521)
115 PRK14901 16S rRNA methyltransf 97.8 2.6E-05 5.7E-10 69.9 5.1 75 2-76 283-385 (434)
116 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 7.1E-05 1.5E-09 61.9 6.6 91 24-127 138-238 (256)
117 PRK04457 spermidine synthase; 97.8 3.3E-05 7.2E-10 64.5 4.5 77 2-79 96-181 (262)
118 TIGR00536 hemK_fam HemK family 97.8 3.5E-05 7.6E-10 65.2 4.7 73 2-75 144-244 (284)
119 PRK11805 N5-glutamine S-adenos 97.7 4.4E-05 9.5E-10 65.3 4.8 73 2-75 163-263 (307)
120 KOG1331|consensus 97.7 3.9E-05 8.6E-10 63.5 4.1 73 2-78 71-146 (293)
121 PRK14904 16S rRNA methyltransf 97.7 4.4E-05 9.5E-10 68.7 4.8 76 2-78 281-380 (445)
122 PRK13256 thiopurine S-methyltr 97.7 0.00042 9.1E-09 56.4 9.9 106 2-127 71-196 (226)
123 PRK10901 16S rRNA methyltransf 97.7 5.7E-05 1.2E-09 67.6 5.3 75 2-76 274-373 (427)
124 PF12147 Methyltransf_20: Puta 97.7 0.00021 4.5E-09 59.6 7.7 121 2-127 167-297 (311)
125 PRK14903 16S rRNA methyltransf 97.6 8.5E-05 1.9E-09 66.5 4.6 76 2-77 268-368 (431)
126 KOG1269|consensus 97.6 6.9E-05 1.5E-09 65.1 3.9 55 21-75 161-215 (364)
127 PRK13943 protein-L-isoaspartat 97.6 4.5E-05 9.9E-10 65.4 2.6 68 2-75 111-180 (322)
128 KOG1271|consensus 97.5 0.00049 1.1E-08 53.5 7.6 74 2-75 97-181 (227)
129 TIGR00417 speE spermidine synt 97.5 7.1E-05 1.5E-09 62.9 3.3 75 1-75 101-186 (270)
130 PF07942 N2227: N2227-like pro 97.5 0.00085 1.9E-08 55.9 9.5 94 20-128 144-242 (270)
131 TIGR00446 nop2p NOL1/NOP2/sun 97.5 9.6E-05 2.1E-09 61.8 3.9 76 2-77 102-201 (264)
132 PLN02366 spermidine synthase 97.5 0.0001 2.2E-09 63.0 3.9 75 1-75 120-206 (308)
133 PF05724 TPMT: Thiopurine S-me 97.5 0.00038 8.3E-09 56.5 6.9 108 2-128 65-190 (218)
134 COG1352 CheR Methylase of chem 97.5 0.00022 4.7E-09 59.5 5.5 54 21-74 185-240 (268)
135 TIGR00563 rsmB ribosomal RNA s 97.5 0.00025 5.3E-09 63.5 6.0 76 2-77 268-370 (426)
136 TIGR03704 PrmC_rel_meth putati 97.4 0.00041 8.9E-09 57.6 6.8 73 2-75 116-216 (251)
137 PRK01544 bifunctional N5-gluta 97.4 0.00041 8.9E-09 63.4 6.8 74 1-75 167-269 (506)
138 PF03141 Methyltransf_29: Puta 97.3 6.6E-05 1.4E-09 66.8 1.0 48 29-76 172-220 (506)
139 PF00891 Methyltransf_2: O-met 97.3 0.00028 6.2E-09 58.1 4.7 63 6-75 133-199 (241)
140 COG2521 Predicted archaeal met 97.3 0.00068 1.5E-08 54.7 6.1 89 20-129 185-278 (287)
141 KOG2899|consensus 97.2 0.002 4.3E-08 52.4 8.3 40 35-74 163-208 (288)
142 PRK14902 16S rRNA methyltransf 97.2 0.00042 9.1E-09 62.3 4.8 73 2-75 281-379 (444)
143 COG2264 PrmA Ribosomal protein 97.2 0.00086 1.9E-08 56.6 5.9 94 2-128 191-288 (300)
144 COG0500 SmtA SAM-dependent met 97.2 0.0018 4E-08 48.1 7.3 77 2-79 78-159 (257)
145 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.00024 5.2E-09 67.4 2.8 74 2-75 567-656 (702)
146 smart00650 rADc Ribosomal RNA 97.0 0.0011 2.3E-08 51.6 4.8 70 2-74 41-112 (169)
147 COG4123 Predicted O-methyltran 97.0 0.00055 1.2E-08 56.2 3.2 74 2-75 74-170 (248)
148 COG2519 GCD14 tRNA(1-methylade 97.0 0.0013 2.7E-08 53.9 5.0 67 3-75 126-195 (256)
149 PF06080 DUF938: Protein of un 97.0 0.0045 9.7E-08 49.4 8.1 80 36-124 100-188 (204)
150 PF06859 Bin3: Bicoid-interact 97.0 0.00033 7.1E-09 49.9 1.4 37 38-74 1-43 (110)
151 COG2518 Pcm Protein-L-isoaspar 97.0 0.00084 1.8E-08 53.6 3.7 69 2-76 100-170 (209)
152 PLN02823 spermine synthase 96.9 0.001 2.2E-08 57.5 4.1 75 1-75 132-220 (336)
153 PF01135 PCMT: Protein-L-isoas 96.9 0.00018 3.9E-09 58.0 -0.6 68 2-75 103-172 (209)
154 PF03492 Methyltransf_7: SAM d 96.9 0.0062 1.3E-07 52.7 8.5 103 27-131 96-256 (334)
155 COG1041 Predicted DNA modifica 96.8 0.0029 6.2E-08 54.3 6.1 74 2-75 225-310 (347)
156 PHA03412 putative methyltransf 96.8 0.0019 4.1E-08 52.8 4.7 66 1-70 81-158 (241)
157 PLN02781 Probable caffeoyl-CoA 96.8 0.00095 2.1E-08 54.8 2.9 70 2-74 99-177 (234)
158 PRK15128 23S rRNA m(5)C1962 me 96.8 0.00077 1.7E-08 59.6 2.4 74 2-75 249-339 (396)
159 PRK00536 speE spermidine synth 96.8 0.0049 1.1E-07 51.4 6.8 67 1-75 99-171 (262)
160 PLN02672 methionine S-methyltr 96.7 0.0043 9.3E-08 61.0 7.3 75 1-75 147-278 (1082)
161 PLN02668 indole-3-acetate carb 96.6 0.024 5.2E-07 49.8 10.5 95 34-130 158-311 (386)
162 COG2813 RsmC 16S RNA G1207 met 96.6 0.0058 1.3E-07 51.5 6.1 76 1-78 187-269 (300)
163 KOG2352|consensus 96.5 0.007 1.5E-07 54.0 6.5 75 2-76 77-162 (482)
164 COG2242 CobL Precorrin-6B meth 96.5 0.0069 1.5E-07 47.5 5.7 69 2-75 64-135 (187)
165 COG0421 SpeE Spermidine syntha 96.5 0.003 6.5E-08 53.2 3.9 73 1-75 105-190 (282)
166 PF04672 Methyltransf_19: S-ad 96.4 0.0067 1.4E-07 50.4 5.1 116 2-124 101-232 (267)
167 PF02390 Methyltransf_4: Putat 96.3 0.0023 5.1E-08 51.0 2.2 74 2-75 47-133 (195)
168 KOG3178|consensus 96.3 0.033 7.2E-07 47.8 8.9 112 3-127 206-329 (342)
169 PF08704 GCD14: tRNA methyltra 96.3 0.018 4E-07 47.5 7.2 68 3-75 72-146 (247)
170 PF10672 Methyltrans_SAM: S-ad 96.2 0.00076 1.6E-08 56.8 -1.1 74 2-75 152-238 (286)
171 PF06325 PrmA: Ribosomal prote 96.2 0.0025 5.4E-08 54.0 1.8 69 2-75 190-259 (295)
172 COG4122 Predicted O-methyltran 96.1 0.0056 1.2E-07 49.5 3.2 70 2-74 90-165 (219)
173 COG1092 Predicted SAM-dependen 95.8 0.0038 8.2E-08 54.9 1.3 75 2-76 246-337 (393)
174 PF01564 Spermine_synth: Sperm 95.7 0.0054 1.2E-07 50.8 1.7 75 1-75 105-191 (246)
175 PF03269 DUF268: Caenorhabditi 95.6 0.012 2.6E-07 44.9 2.9 41 36-76 61-112 (177)
176 KOG3201|consensus 95.5 0.03 6.6E-07 42.8 4.9 40 36-75 101-140 (201)
177 PRK13168 rumA 23S rRNA m(5)U19 95.4 0.015 3.3E-07 52.3 3.6 70 2-75 325-400 (443)
178 TIGR03439 methyl_EasF probable 95.4 0.049 1.1E-06 46.8 6.4 74 2-75 110-197 (319)
179 PRK11933 yebU rRNA (cytosine-C 95.3 0.022 4.7E-07 51.6 4.2 76 2-77 144-244 (470)
180 PF01170 UPF0020: Putative RNA 95.3 0.018 3.9E-07 45.2 3.2 66 2-67 67-143 (179)
181 COG2890 HemK Methylase of poly 95.1 0.091 2E-06 44.4 7.3 70 2-75 140-238 (280)
182 PLN02476 O-methyltransferase 94.6 0.041 8.9E-07 46.3 3.8 70 2-74 149-227 (278)
183 PF03059 NAS: Nicotianamine sy 94.5 0.022 4.8E-07 47.8 2.0 74 2-75 152-230 (276)
184 COG0220 Predicted S-adenosylme 94.5 0.12 2.5E-06 42.3 6.1 55 21-75 99-164 (227)
185 COG3963 Phospholipid N-methylt 94.4 0.067 1.5E-06 41.2 4.2 74 2-78 79-159 (194)
186 PF03141 Methyltransf_29: Puta 94.3 0.041 8.9E-07 49.5 3.4 46 30-75 419-467 (506)
187 PRK13699 putative methylase; P 94.3 0.12 2.6E-06 42.2 5.8 48 23-73 3-70 (227)
188 KOG1661|consensus 94.3 0.072 1.6E-06 42.6 4.2 50 20-75 144-193 (237)
189 PF01596 Methyltransf_3: O-met 94.1 0.025 5.3E-07 45.5 1.4 71 2-75 76-155 (205)
190 PRK03522 rumB 23S rRNA methylu 94.1 0.037 7.9E-07 47.6 2.5 71 2-75 201-274 (315)
191 PLN02589 caffeoyl-CoA O-methyl 94.0 0.036 7.8E-07 45.9 2.1 70 2-74 110-189 (247)
192 PF02527 GidB: rRNA small subu 93.9 0.027 5.9E-07 44.4 1.3 51 20-75 98-148 (184)
193 PF06962 rRNA_methylase: Putat 93.9 0.029 6.3E-07 42.0 1.3 77 2-80 5-97 (140)
194 COG4262 Predicted spermidine s 93.7 0.13 2.9E-06 44.5 5.0 70 1-75 318-407 (508)
195 PRK10909 rsmD 16S rRNA m(2)G96 93.6 0.048 1E-06 43.6 2.2 73 2-76 82-160 (199)
196 PRK11524 putative methyltransf 93.5 0.054 1.2E-06 45.8 2.5 55 21-75 8-80 (284)
197 COG4798 Predicted methyltransf 93.4 0.23 5E-06 39.3 5.5 68 38-123 130-200 (238)
198 KOG3987|consensus 93.1 0.07 1.5E-06 42.6 2.4 67 2-75 140-207 (288)
199 TIGR00479 rumA 23S rRNA (uraci 92.9 0.068 1.5E-06 47.9 2.4 71 2-75 320-396 (431)
200 PRK04338 N(2),N(2)-dimethylgua 92.5 0.087 1.9E-06 46.5 2.4 70 2-75 87-158 (382)
201 PF05185 PRMT5: PRMT5 arginine 92.4 0.1 2.2E-06 47.1 2.8 52 20-72 241-294 (448)
202 PRK01544 bifunctional N5-gluta 92.0 0.1 2.2E-06 47.9 2.2 57 19-75 396-462 (506)
203 PRK14896 ksgA 16S ribosomal RN 91.9 0.12 2.6E-06 43.1 2.4 47 2-50 57-103 (258)
204 KOG2798|consensus 91.8 0.53 1.2E-05 40.0 6.1 80 36-127 257-336 (369)
205 PF11899 DUF3419: Protein of u 91.3 0.36 7.7E-06 42.6 4.8 58 20-77 275-336 (380)
206 KOG2904|consensus 91.1 0.46 1E-05 39.7 5.0 86 1-88 177-298 (328)
207 TIGR00755 ksgA dimethyladenosi 90.5 0.39 8.4E-06 39.8 4.2 62 2-70 57-121 (253)
208 PRK11727 23S rRNA mA1618 methy 90.0 1.5 3.3E-05 37.8 7.4 48 2-49 144-200 (321)
209 COG2520 Predicted methyltransf 89.8 0.45 9.7E-06 41.2 4.1 73 2-78 217-292 (341)
210 COG0357 GidB Predicted S-adeno 89.5 0.35 7.7E-06 39.1 3.0 62 8-74 106-167 (215)
211 COG0116 Predicted N6-adenine-s 89.2 0.33 7.2E-06 42.5 2.8 74 1-75 259-344 (381)
212 PF10294 Methyltransf_16: Puta 89.1 0.49 1.1E-05 36.8 3.5 56 20-75 97-156 (173)
213 TIGR00027 mthyl_TIGR00027 meth 89.1 5.2 0.00011 33.4 9.8 102 20-123 132-245 (260)
214 PRK00274 ksgA 16S ribosomal RN 89.0 0.26 5.5E-06 41.4 2.0 46 1-47 69-114 (272)
215 KOG1709|consensus 88.5 0.66 1.4E-05 37.4 3.8 70 4-73 132-204 (271)
216 TIGR02085 meth_trns_rumB 23S r 88.0 0.41 8.9E-06 42.2 2.7 71 2-75 261-334 (374)
217 COG0293 FtsJ 23S rRNA methylas 87.8 2.9 6.4E-05 33.5 7.2 64 20-83 85-167 (205)
218 PRK11783 rlmL 23S rRNA m(2)G24 87.6 1 2.2E-05 43.2 5.2 74 2-75 262-347 (702)
219 KOG3420|consensus 87.0 0.4 8.7E-06 36.2 1.7 48 2-49 77-125 (185)
220 COG2263 Predicted RNA methylas 86.7 0.36 7.8E-06 38.1 1.4 43 1-46 73-116 (198)
221 PF02475 Met_10: Met-10+ like- 86.6 0.24 5.1E-06 39.7 0.4 66 2-72 131-199 (200)
222 KOG1663|consensus 86.2 1.1 2.4E-05 36.4 3.9 52 20-74 125-182 (237)
223 PF05430 Methyltransf_30: S-ad 85.9 0.66 1.4E-05 34.1 2.4 52 20-72 31-87 (124)
224 COG0144 Sun tRNA and rRNA cyto 85.8 1.2 2.6E-05 38.9 4.4 75 2-76 188-289 (355)
225 KOG1500|consensus 85.2 1.2 2.5E-05 38.4 3.8 68 6-74 209-281 (517)
226 PF09243 Rsm22: Mitochondrial 83.8 1.3 2.8E-05 37.3 3.5 73 1-77 63-141 (274)
227 TIGR00308 TRM1 tRNA(guanine-26 83.1 0.75 1.6E-05 40.5 1.9 70 2-75 75-147 (374)
228 PTZ00338 dimethyladenosine tra 78.9 0.89 1.9E-05 38.7 0.9 48 2-51 64-114 (294)
229 PF01861 DUF43: Protein of unk 77.4 13 0.00028 30.6 7.1 71 2-75 73-149 (243)
230 PRK05031 tRNA (uracil-5-)-meth 77.4 1.3 2.8E-05 38.9 1.5 63 2-75 234-320 (362)
231 PF01728 FtsJ: FtsJ-like methy 76.1 5.1 0.00011 31.1 4.5 42 37-78 90-142 (181)
232 COG2265 TrmA SAM-dependent met 75.1 2.4 5.2E-05 38.1 2.6 66 2-75 321-396 (432)
233 TIGR02143 trmA_only tRNA (urac 74.7 1.4 3.1E-05 38.4 1.1 63 2-75 225-311 (353)
234 TIGR00478 tly hemolysin TlyA f 74.6 5.9 0.00013 32.4 4.6 62 1-75 103-171 (228)
235 PF07109 Mg-por_mtran_C: Magne 73.6 17 0.00037 25.4 6.0 30 106-135 60-89 (97)
236 PF01269 Fibrillarin: Fibrilla 71.9 4.8 0.0001 32.7 3.3 66 2-75 104-178 (229)
237 PF04816 DUF633: Family of unk 69.3 10 0.00022 30.5 4.7 90 2-125 27-121 (205)
238 PF01555 N6_N4_Mtase: DNA meth 68.3 2.3 4.9E-05 33.9 0.8 23 53-75 34-56 (231)
239 cd01842 SGNH_hydrolase_like_5 68.1 12 0.00025 29.4 4.6 43 34-76 46-100 (183)
240 PRK00050 16S rRNA m(4)C1402 me 68.1 2.7 5.9E-05 35.8 1.3 56 2-57 50-111 (296)
241 COG4076 Predicted RNA methylas 67.6 8.3 0.00018 30.6 3.7 69 2-72 60-132 (252)
242 TIGR00006 S-adenosyl-methyltra 66.9 4.9 0.00011 34.4 2.5 25 53-77 218-242 (305)
243 TIGR00095 RNA methyltransferas 66.9 4 8.7E-05 32.2 1.9 73 2-75 78-159 (189)
244 PF14740 DUF4471: Domain of un 66.8 15 0.00032 31.2 5.4 48 21-75 201-254 (289)
245 COG0275 Predicted S-adenosylme 66.0 5.1 0.00011 34.1 2.5 26 53-78 222-247 (314)
246 PF02384 N6_Mtase: N-6 DNA Met 65.8 4.2 9.1E-05 34.6 2.0 74 2-75 83-183 (311)
247 KOG3191|consensus 65.6 13 0.00028 29.4 4.3 76 1-77 73-170 (209)
248 KOG1099|consensus 65.0 13 0.00028 30.5 4.4 60 20-79 89-167 (294)
249 KOG2539|consensus 63.4 15 0.00032 33.3 4.9 75 1-75 231-315 (491)
250 KOG1562|consensus 63.3 9.3 0.0002 32.5 3.5 73 2-74 151-235 (337)
251 KOG1499|consensus 62.8 5.9 0.00013 34.3 2.3 52 21-72 110-164 (346)
252 TIGR02987 met_A_Alw26 type II 61.2 15 0.00033 33.9 4.9 45 2-46 69-120 (524)
253 PRK00050 16S rRNA m(4)C1402 me 61.0 7.3 0.00016 33.2 2.5 25 53-77 214-238 (296)
254 PRK01747 mnmC bifunctional tRN 57.9 27 0.00058 33.3 6.0 53 21-73 148-204 (662)
255 PF01795 Methyltransf_5: MraW 57.7 8.4 0.00018 33.0 2.4 25 53-77 219-243 (310)
256 COG0686 Ald Alanine dehydrogen 57.3 5.8 0.00013 34.0 1.3 69 2-72 197-265 (371)
257 PF10354 DUF2431: Domain of un 55.6 34 0.00074 26.4 5.3 50 26-77 59-127 (166)
258 PF13578 Methyltransf_24: Meth 53.8 7.5 0.00016 27.1 1.3 54 20-74 49-104 (106)
259 PRK04148 hypothetical protein; 53.2 32 0.00069 25.6 4.6 67 1-78 44-112 (134)
260 PF01558 POR: Pyruvate ferredo 53.0 34 0.00075 26.2 5.0 47 21-75 39-86 (173)
261 PF03602 Cons_hypoth95: Conser 52.8 1.5 3.3E-05 34.5 -2.7 73 2-76 71-154 (183)
262 KOG0820|consensus 51.3 9.2 0.0002 32.2 1.5 46 2-49 86-134 (315)
263 COG0742 N6-adenine-specific me 47.7 16 0.00035 28.9 2.3 74 2-75 72-154 (187)
264 KOG2730|consensus 47.6 10 0.00022 31.0 1.2 43 2-44 122-171 (263)
265 COG3315 O-Methyltransferase in 47.3 1.5E+02 0.0032 25.3 8.3 103 21-123 144-259 (297)
266 COG3897 Predicted methyltransf 46.8 92 0.002 25.1 6.3 73 3-79 109-183 (218)
267 COG5459 Predicted rRNA methyla 46.7 46 0.001 29.2 5.0 49 28-77 176-227 (484)
268 COG5379 BtaA S-adenosylmethion 45.7 25 0.00054 30.0 3.2 56 21-76 308-367 (414)
269 PF06557 DUF1122: Protein of u 45.6 1.1E+02 0.0024 23.6 6.4 53 56-124 67-119 (170)
270 KOG1122|consensus 44.2 38 0.00081 30.4 4.2 56 20-76 292-372 (460)
271 PRK06853 indolepyruvate oxidor 42.7 44 0.00096 26.4 4.2 31 37-75 67-97 (197)
272 COG0030 KsgA Dimethyladenosine 42.6 19 0.00042 30.0 2.2 45 2-46 58-103 (259)
273 COG1867 TRM1 N2,N2-dimethylgua 42.1 23 0.0005 31.1 2.6 70 2-75 82-154 (380)
274 PF05711 TylF: Macrocin-O-meth 41.3 19 0.00041 29.8 2.0 57 20-78 157-215 (248)
275 PRK09880 L-idonate 5-dehydroge 39.2 38 0.00083 29.0 3.6 32 37-74 234-265 (343)
276 PF06897 DUF1269: Protein of u 38.8 1.2E+02 0.0025 21.4 5.4 33 54-86 41-73 (102)
277 COG1064 AdhP Zn-dependent alco 36.3 51 0.0011 28.7 3.9 63 2-75 196-259 (339)
278 PRK08534 pyruvate ferredoxin o 35.5 91 0.002 24.2 4.9 33 36-75 64-97 (181)
279 PRK06274 indolepyruvate oxidor 35.4 1.2E+02 0.0026 23.8 5.7 32 36-75 65-96 (197)
280 PF02005 TRM: N2,N2-dimethylgu 35.3 15 0.00032 32.5 0.4 70 2-75 80-154 (377)
281 PRK08537 2-oxoglutarate ferred 35.3 1.3E+02 0.0028 23.2 5.8 31 37-75 66-96 (177)
282 KOG0822|consensus 35.0 40 0.00086 31.3 3.0 53 20-73 421-476 (649)
283 TIGR00640 acid_CoA_mut_C methy 34.9 1.3E+02 0.0029 22.1 5.5 59 111-175 21-79 (132)
284 PF09445 Methyltransf_15: RNA 34.5 6.6 0.00014 30.3 -1.7 44 2-45 27-76 (163)
285 PF08351 DUF1726: Domain of un 34.0 70 0.0015 22.0 3.6 37 37-76 10-46 (92)
286 PF07927 YcfA: YcfA-like prote 33.2 77 0.0017 19.1 3.4 28 110-137 2-29 (56)
287 PF04989 CmcI: Cephalosporin h 31.3 60 0.0013 26.1 3.3 55 20-75 85-147 (206)
288 KOG2915|consensus 31.0 1.2E+02 0.0026 25.8 5.0 50 20-74 157-208 (314)
289 PF08468 MTS_N: Methyltransfer 30.7 81 0.0018 24.0 3.8 35 37-75 68-105 (155)
290 PF12780 AAA_8: P-loop contain 30.5 3.2E+02 0.007 22.8 7.7 104 38-150 7-117 (268)
291 TIGR01501 MthylAspMutase methy 29.5 2.2E+02 0.0048 21.1 5.8 59 111-175 20-78 (134)
292 PRK10556 hypothetical protein; 29.4 80 0.0017 22.0 3.1 22 108-129 4-25 (111)
293 TIGR03334 IOR_beta indolepyruv 29.0 2E+02 0.0043 22.5 5.9 46 22-75 48-93 (189)
294 KOG2198|consensus 27.9 69 0.0015 28.2 3.3 25 56-80 277-301 (375)
295 COG1568 Predicted methyltransf 27.9 63 0.0014 27.5 2.9 66 2-75 181-260 (354)
296 KOG0024|consensus 27.3 1.5E+02 0.0032 25.9 5.0 69 2-79 200-277 (354)
297 PF09400 DUF2002: Protein of u 26.7 1E+02 0.0022 21.8 3.3 21 108-128 4-24 (111)
298 PF07090 DUF1355: Protein of u 26.6 1.1E+02 0.0025 23.9 4.0 38 37-74 66-107 (177)
299 COG1063 Tdh Threonine dehydrog 26.5 1.2E+02 0.0027 26.3 4.7 63 2-74 199-268 (350)
300 COG1724 Predicted RNA binding 26.1 1.9E+02 0.0041 18.7 4.7 31 107-137 7-37 (66)
301 PF00398 RrnaAD: Ribosomal RNA 25.2 43 0.00094 27.8 1.6 63 2-67 58-123 (262)
302 PRK09424 pntA NAD(P) transhydr 24.8 98 0.0021 28.6 3.9 38 37-74 247-284 (509)
303 PRK08441 oorC 2-oxoglutarate-a 24.7 2.3E+02 0.0049 22.1 5.5 31 37-75 67-97 (183)
304 PRK14029 pyruvate/ketoisovaler 24.4 2.4E+02 0.0051 22.0 5.6 34 35-75 63-97 (185)
305 PRK14755 transcriptional regul 23.9 52 0.0011 16.3 1.1 14 58-71 9-22 (26)
306 PF14258 DUF4350: Domain of un 23.6 1.6E+02 0.0035 18.5 3.8 20 55-74 50-69 (70)
307 COG3010 NanE Putative N-acetyl 23.5 3.2E+02 0.0068 22.2 5.9 104 40-149 16-127 (229)
308 PRK09489 rsmC 16S ribosomal RN 23.5 1E+02 0.0022 26.8 3.6 35 37-75 75-112 (342)
309 TIGR02884 spore_pdaA delta-lac 23.1 3.8E+02 0.0083 21.5 6.7 23 53-75 172-194 (224)
310 PRK08338 2-oxoglutarate ferred 23.0 2.7E+02 0.0058 21.3 5.6 31 37-75 63-93 (170)
311 COG2185 Sbm Methylmalonyl-CoA 22.9 3.2E+02 0.0069 20.6 5.6 62 109-176 29-90 (143)
312 PF10237 N6-adenineMlase: Prob 22.5 1.3E+02 0.0028 23.1 3.6 51 23-75 67-123 (162)
313 cd03143 A4_beta-galactosidase_ 22.4 1.5E+02 0.0032 22.1 3.9 36 37-75 52-87 (154)
314 cd08283 FDH_like_1 Glutathione 22.4 1.3E+02 0.0029 26.2 4.2 38 37-74 253-305 (386)
315 PF08532 Glyco_hydro_42M: Beta 22.2 1.6E+02 0.0034 23.4 4.2 47 21-75 45-91 (207)
316 TIGR02175 PorC_KorC 2-oxoacid: 21.4 2.1E+02 0.0046 22.0 4.8 32 36-75 64-97 (177)
317 PF05958 tRNA_U5-meth_tr: tRNA 21.3 37 0.0008 29.6 0.4 31 2-32 224-256 (352)
318 PF10017 Methyltransf_33: Hist 20.9 1.4E+02 0.0031 21.7 3.5 22 107-128 96-117 (127)
319 COG1889 NOP1 Fibrillarin-like 20.6 1.3E+02 0.0028 24.4 3.3 61 7-75 115-180 (231)
320 PRK05844 pyruvate flavodoxin o 20.5 2.3E+02 0.005 22.1 4.8 31 38-75 66-97 (186)
321 PF13602 ADH_zinc_N_2: Zinc-bi 20.5 24 0.00052 25.2 -0.8 34 36-74 17-50 (127)
322 PF12641 Flavodoxin_3: Flavodo 20.3 3.3E+02 0.0071 20.8 5.4 54 26-80 27-80 (160)
323 PF06460 NSP13: Coronavirus NS 20.1 1.6E+02 0.0035 24.8 3.8 51 24-75 108-169 (299)
No 1
>KOG2940|consensus
Probab=100.00 E-value=9.1e-36 Score=233.66 Aligned_cols=222 Identities=55% Similarity=0.930 Sum_probs=207.9
Q ss_pred CCcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCc
Q psy16312 1 MCDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGET 80 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~ 80 (245)
++|.|-.|++.++..-.....+.+.++|-|.|+|.+++||+|+++.++||+.|....+.+++..|||+|.|+.+.++.++
T Consensus 100 ~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 100 MMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred eeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhcccc
Confidence 57999999999987543224577899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEEEeEEEeCCCHHHHHHHHhccccccccccCCCC
Q psy16312 81 LYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMGESNACVNRSLH 160 (245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (245)
+.|++..+..+.+++.++..++++||....++..+|..+||....+++.++...|+...+++.++++||.++..+++...
T Consensus 180 LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtDEi~v~Yp~mfeLm~dLq~MgEsn~~~~Rn~~ 259 (325)
T KOG2940|consen 180 LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTDEIVVGYPRMFELMEDLQGMGESNAALNRNAI 259 (325)
T ss_pred HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecccceeecCchHHHHHHHHHhhcccchhhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCCCceeceeEEEEEEEeeCCCCCCCCCCCCCceeeecccccccc
Q psy16312 161 FPLELQYASAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWKPDPSQPKPLKRGSGEVSLKDLHRID 229 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~a~Kp~~~~~~~~~~~~~~~~~~~~~~~~ 229 (245)
++++-.-+..+.|+++|.. ++ |. ++.+|+++|+++|||++++|.++++++++||++||-++.
T Consensus 260 l~Ret~vAaaAiY~smya~--e~----~~-iPATfqiiy~iGWk~~~s~pq~~~RGs~tVS~~dlgki~ 321 (325)
T KOG2940|consen 260 LNRETMVAAAAIYQSMYAT--ED----GT-IPATFQIIYMIGWKPHPSQPQAAERGSATVSFKDLGKIF 321 (325)
T ss_pred ccHHHHHHHHHHHHHHhcC--CC----CC-cceeEEEEEEEccCcCCCCCChhhcCCceEeHHHHHHhh
Confidence 9999888889999999998 77 87 999999999999999999999999999999999997764
No 2
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.92 E-value=2.9e-23 Score=172.38 Aligned_cols=180 Identities=22% Similarity=0.317 Sum_probs=151.1
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcH
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETL 81 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~ 81 (245)
+|+|+.|++.|+++.. .+.++++|++.+|+++++||+|+|+.++||++|+..++.+++++|+|||.+++++++..++
T Consensus 70 ~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 146 (251)
T PRK10258 70 LDLSPPMLAQARQKDA---ADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL 146 (251)
T ss_pred EECCHHHHHHHHhhCC---CCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence 7999999999998764 3678999999999988899999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEEEeEEEeCCCHHHHHHHHhccccccccccC-CCC
Q psy16312 82 YELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMGESNACVNR-SLH 160 (245)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~ 160 (245)
.++...+.... ..++..++.+.+++..++...|+.. ..+.+++.|+++.+++++++.+|++.....+ ...
T Consensus 147 ~el~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~f~~~~~~l~~lk~~G~~~~~~~~~~~~ 217 (251)
T PRK10258 147 PELHQAWQAVD------ERPHANRFLPPDAIEQALNGWRYQH---HIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRI 217 (251)
T ss_pred HHHHHHHHHhc------cCCccccCCCHHHHHHHHHhCCcee---eeeEEEEECCCHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 88877664321 1244567889999999999887764 5667888999999999999999998765443 467
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCCCceeceeEEEEEEEeeC
Q psy16312 161 FPLELQYASAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWK 204 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~a~K 204 (245)
+++..++++.+.|.+ .+ |. +++||+++|.+++|
T Consensus 218 ~~~~~~~~~~~~~~~------~~----g~-~~lty~v~~~~~~~ 250 (251)
T PRK10258 218 LTRSQLQRLQLAWPQ------QQ----GR-YPLTYHLFLGVIER 250 (251)
T ss_pred CcHHHHHHHHHhccc------cC----CC-cceEEEEEEEEEEc
Confidence 788888887777643 35 77 99999999988876
No 3
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.85 E-value=1.6e-19 Score=148.24 Aligned_cols=177 Identities=27% Similarity=0.451 Sum_probs=149.9
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcH
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETL 81 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~ 81 (245)
+|+|+.|++.++++.. .++.++++|++++++++++||+|+++.++||+.|+..++.+++++|+|||+++++.+....+
T Consensus 64 ~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 64 LDISAGMLAQAKTKLS--ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred EeChHHHHHHHHHhcC--CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 7999999999988776 47899999999999888999999999999999999999999999999999999998877776
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEEEeEEEeCCCHHHHHHHHhccccccccccCCCCC
Q psy16312 82 YELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMGESNACVNRSLHF 161 (245)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (245)
.++...+.. ...++.+...+.+++.++ |..+.+........+++...++++++.+|...... ..+
T Consensus 142 ~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~-f~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~---~~~ 206 (240)
T TIGR02072 142 HELRQSFGQ-----------HGLRYLSLDELKALLKNS-FELLTLEEELITLSFDDPLDVLRHLKKTGANGLSS---GRT 206 (240)
T ss_pred HHHHHHHHH-----------hccCCCCHHHHHHHHHHh-cCCcEEEEEEEEEeCCCHHHHHHHHHHhccCcCCC---CCC
Confidence 655443321 223567888999999988 99888888888899999999999999999765532 236
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCCCceeceeEEEEEEEeeC
Q psy16312 162 PLELQYASAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWK 204 (245)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~a~K 204 (245)
.++.++++.+.|.+.+. .+ | ++++|.+++++|+|
T Consensus 207 ~~~~~~~~~~~~~~~~~---~~----g--i~~~~~~~~~~~~k 240 (240)
T TIGR02072 207 SRKQLKAFLERYEQEFQ---PD----G--LPLTYHVVYGIAKK 240 (240)
T ss_pred CHHHHHHHHHHHHHhhc---CC----C--ceeEEEEEEEEEEC
Confidence 77888899999998875 35 6 99999999999987
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.83 E-value=1.1e-19 Score=151.17 Aligned_cols=190 Identities=15% Similarity=0.110 Sum_probs=126.5
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCc-
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGET- 80 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~- 80 (245)
+|+|+.|++.|+++ +++|+++|+++++ .+++||+|+|+.++||++|+..++++++++|||||++++..++...
T Consensus 59 vD~s~~~~~~a~~~-----~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 132 (255)
T PRK14103 59 LDSSPEMVAAARER-----GVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDA 132 (255)
T ss_pred EECCHHHHHHHHhc-----CCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCC
Confidence 79999999999753 5789999999885 4579999999999999999999999999999999999988654311
Q ss_pred -HHHHHHHHHHHHHHhcC----CC-CCcccCCCCHHHHHHHHHhCCCeeeEEEEEeEEEeCCCHHHHHHHHhcccccccc
Q psy16312 81 -LYELRSAVHLAEMERRG----GV-ASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMGESNAC 154 (245)
Q Consensus 81 -~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 154 (245)
.......+. ....+. .. ......+.+...+.++|+++||++..... .....+.....+.+++..++.....
T Consensus 133 ~~~~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (255)
T PRK14103 133 PSHAAVRALA--RREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDAWET-TYVHQLTGEDPVLDWITGTALRPVR 209 (255)
T ss_pred hhHHHHHHHh--ccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEEEee-eeeeeCCCchhhhhhhhccchhhhh
Confidence 111111000 000011 00 01123356889999999999998654443 3344555556677777655432222
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCceeceeEEEEEEEeeCCC
Q psy16312 155 VNRSLHFPLELQYASAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWKPD 206 (245)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~a~Kp~ 206 (245)
........+.+.+++.+.+++.+... ++ |. +.++|.+++++|+||.
T Consensus 210 ~~l~~~~~~~~~~~~~~~l~~~~~~~-~~----g~-~~~~~~~~~~~a~~~~ 255 (255)
T PRK14103 210 ERLSDDSWEQFRAELIPLLREAYPPR-AD----GT-TFFPFRRVFVVARVGG 255 (255)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHCCCC-CC----Cc-EEeeeccEEEEEEeCC
Confidence 11222223445555555566654321 56 87 8899999999999983
No 5
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.80 E-value=5.3e-19 Score=138.39 Aligned_cols=191 Identities=18% Similarity=0.193 Sum_probs=133.9
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcH
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETL 81 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~ 81 (245)
+|.|++||+.|+++.+ +++|..+|+.++.-+ ..+|++++|.+|||++|...+|..+...|.|||++.+..+. ++
T Consensus 60 iDsS~~Mla~Aa~rlp---~~~f~~aDl~~w~p~-~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd--N~ 133 (257)
T COG4106 60 IDSSPAMLAKAAQRLP---DATFEEADLRTWKPE-QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD--NL 133 (257)
T ss_pred ccCCHHHHHHHHHhCC---CCceecccHhhcCCC-CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCC--cc
Confidence 7999999999988875 899999999998754 78999999999999999999999999999999999999843 32
Q ss_pred HH-----HHHHHHHHHH-HhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEEEeEEEeCCCHHHHHHHHhccccccccc
Q psy16312 82 YE-----LRSAVHLAEM-ERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMGESNACV 155 (245)
Q Consensus 82 ~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 155 (245)
.+ +.+.....+. ...++......+..++..+.++|...+..+....+ ......++....++|++++|..+...
T Consensus 134 depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~~rvDiW~T-~Y~h~l~~a~aIvdWvkgTgLrP~L~ 212 (257)
T COG4106 134 DEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPLACRVDIWHT-TYYHQLPGADAIVDWVKGTGLRPYLD 212 (257)
T ss_pred CchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCcccceeeeeee-eccccCCCccchhhheeccccceecc
Confidence 22 2221110000 01111111234567899999999988766533332 33345667789999999999765443
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCceeceeEEEEEEEeeCC
Q psy16312 156 NRSLHFPLELQYASAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWKP 205 (245)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~a~Kp 205 (245)
.........++.+..+.+.+.|-.. .| |+ +.+.|.+++++|+|+
T Consensus 213 ~L~e~~~~~FL~~Y~~~l~~aYP~~-~d----Gr-~ll~FpRlFiVA~~~ 256 (257)
T COG4106 213 RLDEEERQRFLDRYLALLAEAYPPR-AD----GR-VLLAFPRLFIVATRG 256 (257)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCc-cC----Cc-EEeecceEEEEEecC
Confidence 2222222334444444444444432 67 99 999999999999986
No 6
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.78 E-value=4.1e-18 Score=141.99 Aligned_cols=192 Identities=17% Similarity=0.134 Sum_probs=129.6
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcH
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETL 81 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~ 81 (245)
+|+|+.|++.|+++.+ ++.|+++|++.+.. +++||+|+|+.++||++|+..++++++++|||||.++++++.....
T Consensus 61 vD~s~~~i~~a~~~~~---~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~ 136 (258)
T PRK01683 61 IDSSPAMLAEARSRLP---DCQFVEADIASWQP-PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDE 136 (258)
T ss_pred EECCHHHHHHHHHhCC---CCeEEECchhccCC-CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCC
Confidence 7999999999998864 68999999987754 4699999999999999999999999999999999999876332110
Q ss_pred HHHHHHHHHH-HHHhc----CCCCCcccCCCCHHHHHHHHHhCCCeeeEEEEEeEEEeCCCHHHHHHHHhcccccccccc
Q psy16312 82 YELRSAVHLA-EMERR----GGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMGESNACVN 156 (245)
Q Consensus 82 ~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 156 (245)
.. ...+... ....| .........+++...+.+++.++|+.+ .+........+.+...++++++.+|.......
T Consensus 137 ~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (258)
T PRK01683 137 PS-HVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAACRV-DIWHTTYYHPMPSAQAIVEWVKGTGLRPFLDP 214 (258)
T ss_pred HH-HHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCCCce-eeeeeeeeeecCCchhhhhhhhhccHHHHHhh
Confidence 11 0111000 00001 000111124567788999999999875 44444566678888999999887764443221
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCceeceeEEEEEEEeeCC
Q psy16312 157 RSLHFPLELQYASAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWKP 205 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~a~Kp 205 (245)
......+.+.+++.+.+++.+... .+ |. +.++|.+++++|+|+
T Consensus 215 l~~~~~~~f~~~~~~~~~~~~~~~-~~----g~-~~~~~~~~~~~~~~~ 257 (258)
T PRK01683 215 LTESEQAAFLAAYLARIAEAYPLQ-AD----GK-VLLAFPRLFIVARRK 257 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCC-CC----Cc-EEcccceEEEEEEec
Confidence 222223344444444444443211 46 87 999999999999995
No 7
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=6.6e-19 Score=142.96 Aligned_cols=124 Identities=24% Similarity=0.334 Sum_probs=94.7
Q ss_pred CcChHHHHHhhCCCCCC--CCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCC
Q psy16312 2 CDNCESILSQAEPPEDT--EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGE 79 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~--~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~ 79 (245)
+|+|+.||+.|++++.. ..+++|+++|+++|||+|++||+|.++++|++++|++++|+|++|||||||++++..+...
T Consensus 81 ~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 81 LDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred EECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 79999999999998763 2349999999999999999999999999999999999999999999999999887765543
Q ss_pred cHHHHHHHHH---HH-HHHhcCCC-----------CCcccCCCCHHHHHHHHHhCCCeeeE
Q psy16312 80 TLYELRSAVH---LA-EMERRGGV-----------ASHISPFTQIRDVGSLLTRAGFNMLT 125 (245)
Q Consensus 80 ~~~~~~~~~~---~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~aGF~~~~ 125 (245)
....+...+. .. .+...+.. ..+...+++.+++.+.++++||..+.
T Consensus 161 ~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 161 DNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred CchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 3222222211 11 11222211 12334468899999999999999765
No 8
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.76 E-value=2.2e-18 Score=133.41 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=91.0
Q ss_pred CcChHHHHHhhCCCCC--C---CCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPED--T---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|+|++||+.|+++.. . ..+++|+++|++++|+++++||+|++.+++||++|+..++++++|+|||||.+++..+
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 7999999999976542 1 2479999999999999989999999999999999999999999999999999988776
Q ss_pred CCCcH--HHHHHHHHHH----HHH-------hcCCCCCcccCCCCHHHHHHHHHhCCCeeeEE
Q psy16312 77 GGETL--YELRSAVHLA----EME-------RRGGVASHISPFTQIRDVGSLLTRAGFNMLTI 126 (245)
Q Consensus 77 ~~~~~--~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~ 126 (245)
...+. ......+... ... .+......+..+++.+++.++|+++||+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~ 145 (160)
T PLN02232 83 NKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACH 145 (160)
T ss_pred CCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceE
Confidence 54321 1111111000 000 00000112234678999999999999997643
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.75 E-value=6.2e-19 Score=144.19 Aligned_cols=126 Identities=20% Similarity=0.223 Sum_probs=62.3
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCC
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGE 79 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~ 79 (245)
+|+|++||+.|+++.. ...+|+|+++|++++|+++++||+|+|.++++.++|+.++|+|++|+|||||++++..+...
T Consensus 78 vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 78 VDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp EES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred ecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 7999999999998754 23489999999999999999999999999999999999999999999999999877654332
Q ss_pred -c--HHHHHHHHHHHHHHh-----------cCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 80 -T--LYELRSAVHLAEMER-----------RGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 80 -~--~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
. +..+...+...-+.. |......+..|++.+++.++|+++||+.+...
T Consensus 158 ~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 158 RNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp SSHHHHHHHHH---------------------------------------------------
T ss_pred CCchhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 122222221110111 11122344457888999999999999875443
No 10
>PRK08317 hypothetical protein; Provisional
Probab=99.70 E-value=1.5e-15 Score=124.50 Aligned_cols=184 Identities=16% Similarity=0.142 Sum_probs=128.6
Q ss_pred CcChHHHHHhhCCCC-CCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCc
Q psy16312 2 CDNCESILSQAEPPE-DTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGET 80 (245)
Q Consensus 2 iD~S~~ml~~A~~~~-~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~ 80 (245)
+|+|+.|++.|+++. ....++.+.++|++.+++.+++||+|++..+++|++|+..++++++++|||||++++......+
T Consensus 50 ~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 129 (241)
T PRK08317 50 IDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDT 129 (241)
T ss_pred EeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCc
Confidence 799999999998862 2236799999999999988889999999999999999999999999999999999877532111
Q ss_pred -------HHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEEEeEEEeCCCHHHHHHHHhccccccc
Q psy16312 81 -------LYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMGESNA 153 (245)
Q Consensus 81 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 153 (245)
.......... +. ...........+.++|+++||..+.+..................+........
T Consensus 130 ~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (241)
T PRK08317 130 LVWHSGDRALMRKILNF-----WS---DHFADPWLGRRLPGLFREAGLTDIEVEPYTLIETDLKEADKGFGLIRAARRAV 201 (241)
T ss_pred eeecCCChHHHHHHHHH-----HH---hcCCCCcHHHHHHHHHHHcCCCceeEEEEEEeccCcchhhHHHHHHHHHHHHH
Confidence 1111111111 10 01112234567999999999998887766655544344433333322221110
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCceeceeEEEEEEEeeCC
Q psy16312 154 CVNRSLHFPLELQYASAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWKP 205 (245)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~a~Kp 205 (245)
....++.+.++++.+.+++.... |. +..++.+++++|+||
T Consensus 202 ---~~~~~~~~~~~~~~~~l~~~~~~--------~~-~~~~~~~~~~~~~kp 241 (241)
T PRK08317 202 ---EAGGISADEADAWLADLAQLARA--------GE-FFFSVTGFLVVGRKP 241 (241)
T ss_pred ---HcCCCCHHHHHHHHHHHHHHHhc--------CC-EEEEEEEEEEEEeCC
Confidence 12456678888888888877643 66 889999999999998
No 11
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.69 E-value=1e-16 Score=133.65 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=93.1
Q ss_pred CcChHHHHHhhCCCCC-----CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPED-----TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~-----~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|+|++|++.|+++.. ...+++++++|++++|+++++||+|++++++||++|+..++++++|+|||||++++..+
T Consensus 104 vD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 104 LDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 7999999999987642 13579999999999999999999999999999999999999999999999999998877
Q ss_pred CCCcHHH---HHHHHHHH---HH-HhcCC------CCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 77 GGETLYE---LRSAVHLA---EM-ERRGG------VASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 77 ~~~~~~~---~~~~~~~~---~~-~~~~~------~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
...+... +...+... +. ..++. ...+...+.+.+++.++|+++||+.+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~ 247 (261)
T PLN02233 184 NKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHY 247 (261)
T ss_pred CCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEE
Confidence 6543211 11111100 00 00111 00122347899999999999999986543
No 12
>KOG1540|consensus
Probab=99.68 E-value=2.5e-16 Score=126.37 Aligned_cols=124 Identities=18% Similarity=0.245 Sum_probs=94.8
Q ss_pred CcChHHHHHhhCCCC---CC--CCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPE---DT--EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~---~~--~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|+||.||+.+++|. +- ...+.|+++|+|+|||++++||+.+..+.+..++|++++|++++|||||||+|.+..+
T Consensus 136 ~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 136 LDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred EeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEc
Confidence 699999999999987 31 2458999999999999999999999999999999999999999999999999887655
Q ss_pred CCC---cHHHHHHHHHHHHH-----------HhcCCCCCcccCCCCHHHHHHHHHhCCCeeeE
Q psy16312 77 GGE---TLYELRSAVHLAEM-----------ERRGGVASHISPFTQIRDVGSLLTRAGFNMLT 125 (245)
Q Consensus 77 ~~~---~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~ 125 (245)
..- ++.++...+....+ ..+......+..+++.+++..+.+++||..+.
T Consensus 216 skv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 216 SKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred cccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 432 23332222211001 11112234566788999999999999999764
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.58 E-value=8.8e-15 Score=122.19 Aligned_cols=119 Identities=18% Similarity=0.301 Sum_probs=91.1
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccC--ChhHHHHHHHhhhcCCcEEEEEecCCC
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN--NLPGCFQQVLKCLRQDGVFLASIFGGE 79 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~--d~~~~l~~i~r~LkpGG~l~~~~~~~~ 79 (245)
+|+|+.|++.|+++.....++.|+++|+...|+++++||+|+++.+++|++ ++..++++++++|||||+++++.+...
T Consensus 81 iD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 81 VDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred EECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 799999999999876544679999999999999889999999999888886 888999999999999999998865432
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 80 TLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
........+... .. ....++.+..++.++|+++||+++.+.
T Consensus 161 ~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 161 KIENWDEEFKAY-IK------KRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred cccCcHHHHHHH-HH------hcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 211111111111 00 112345688999999999999986654
No 14
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=5.2e-15 Score=127.92 Aligned_cols=120 Identities=11% Similarity=0.083 Sum_probs=90.2
Q ss_pred CcChHHHHHhhCCCCC---CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 2 CDNCESILSQAEPPED---TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~---~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
+|+|+.|++.|+++.. ...+++|+++|+.++|+++++||+|+|..+++|++|+..++++++++|||||++++.++..
T Consensus 147 vD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 147 ITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred EECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 7999999999987543 1247999999999999999999999999999999999999999999999999999877543
Q ss_pred CcH-------HHH-HHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 79 ETL-------YEL-RSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 79 ~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
... ... ...+... ... .....+.+..++.++++++||+.+.+.
T Consensus 227 ~~~~~~~~~l~~~~~~~~~~i-~~~-----~~~p~~~s~~~~~~~l~~aGf~~v~~~ 277 (340)
T PLN02244 227 RDLEPGETSLKPDEQKLLDKI-CAA-----YYLPAWCSTSDYVKLAESLGLQDIKTE 277 (340)
T ss_pred cccccccccCCHHHHHHHHHH-Hhh-----ccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence 211 111 1111100 000 112235688999999999999987654
No 15
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.57 E-value=1.1e-14 Score=124.29 Aligned_cols=126 Identities=15% Similarity=0.097 Sum_probs=93.1
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
||+|+.|++.|+++... ..+++|+++|++++++.+++||+|+|..+|+|+.|+..++++++++|||||.++++++..
T Consensus 159 ID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 159 VDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred EeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 79999999999876431 237999999999999888899999999999999999999999999999999999998755
Q ss_pred CcHHHHHHHHHHHHHHhcCCCC-CcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 79 ETLYELRSAVHLAEMERRGGVA-SHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
.................+-... .....+.+++++.++|+++||+++.+.
T Consensus 239 ~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 239 TMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred CHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 3221111111100011111111 112347899999999999999986554
No 16
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.55 E-value=4.2e-15 Score=104.25 Aligned_cols=71 Identities=27% Similarity=0.410 Sum_probs=62.9
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEE
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLA 73 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~ 73 (245)
+|+|+.|++.|+++... .++.++++|++++|+++++||+|+++.++||++++..++++++|+|||||++++
T Consensus 25 ~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 25 IDISEEMLEQARKRLKN-EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EES-HHHHHHHHHHTTT-STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred EeCCHHHHHHHHhcccc-cCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 79999999999997653 456799999999999999999999999999999999999999999999999875
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.50 E-value=7e-14 Score=114.59 Aligned_cols=127 Identities=17% Similarity=0.228 Sum_probs=93.0
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCC
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGE 79 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~ 79 (245)
+|+|+.|++.|+++.. ...+++++++|++.+++++++||+|++.++++|++++..+++++.++|+|||++++...+..
T Consensus 76 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 76 LDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred EECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 7999999999987653 23478999999999998888999999999999999999999999999999999987765443
Q ss_pred cHHHHHHHHHHH---HHHhcC-----------CCCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 80 TLYELRSAVHLA---EMERRG-----------GVASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
+...+...+... .+...+ ........+++..++.++|+++||+++.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 218 (231)
T TIGR02752 156 TIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKS 218 (231)
T ss_pred CChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEE
Confidence 333332222110 000000 0011223467889999999999999876553
No 18
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.47 E-value=6.3e-13 Score=111.66 Aligned_cols=119 Identities=26% Similarity=0.313 Sum_probs=89.2
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCC-
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGG- 78 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~- 78 (245)
+|+|+.|++.|+++.. ...+++|+++|++++++++++||+|+++.+++|.++...++++++++|||||+++++.+..
T Consensus 108 vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~ 187 (272)
T PRK11873 108 VDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLR 187 (272)
T ss_pred ECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 7999999999988542 2357899999999999988899999999999999999999999999999999998875322
Q ss_pred CcHHH-HHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 79 ETLYE-LRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
.++.. +.... ..+. .......+..++.++|+++||..+.+..
T Consensus 188 ~~~~~~~~~~~-----~~~~---~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 188 GELPEEIRNDA-----ELYA---GCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred CCCCHHHHHhH-----HHHh---ccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 22211 11111 1111 1122345678899999999999876543
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=2.3e-13 Score=123.01 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=90.1
Q ss_pred CcChHHHHHhhCCCCCC-CCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCc
Q psy16312 2 CDNCESILSQAEPPEDT-EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGET 80 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~ 80 (245)
+|+|+.|++.|+++... ..+++|.++|+..+++++++||+|+|..+++|++|+..++++++++|||||+++++.+....
T Consensus 295 vDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~ 374 (475)
T PLN02336 295 IDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSP 374 (475)
T ss_pred EECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 79999999999876542 24689999999999988889999999999999999999999999999999999988754322
Q ss_pred ---HHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 81 ---LYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
..+....+ . .....+.+..++.++++++||+++.++
T Consensus 375 ~~~~~~~~~~~-----~------~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 375 GTPSPEFAEYI-----K------QRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred CCCcHHHHHHH-----H------hcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 11211111 1 111245678899999999999986544
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=4.2e-13 Score=111.70 Aligned_cols=125 Identities=15% Similarity=0.266 Sum_probs=89.4
Q ss_pred CCcChHHHHHhhCCCCCC---CCceeEEEcCCCCCC-CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 1 MCDNCESILSQAEPPEDT---EVIYEKKFVDEEHLP-FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~-~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
.+|+|+.|++.|+++... ..+++++++|+++++ +.+++||+|+|..+++|+.++..++.+++++|||||++++..+
T Consensus 71 ~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 71 LCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred EEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEE
Confidence 379999999999886542 257899999998874 5568999999999999999999999999999999999988876
Q ss_pred CCCcHHHHHHH----HHHHHHHhcCC---CCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 77 GGETLYELRSA----VHLAEMERRGG---VASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 77 ~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
...... +... +.... ..... .........+++++.++|+++||+++...
T Consensus 151 n~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~ 206 (255)
T PRK11036 151 NANGLL-MHNMVAGNFDYVQ-AGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKT 206 (255)
T ss_pred CccHHH-HHHHHccChHHHH-hcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeee
Confidence 554321 1111 10000 00000 00011124578999999999999986544
No 21
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.45 E-value=5.3e-13 Score=114.45 Aligned_cols=113 Identities=18% Similarity=0.154 Sum_probs=87.1
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcH
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETL 81 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~ 81 (245)
+|+|+.|++.|+++... .+++++.+|++++++++++||+|+++.++++++|+..++++++++|||||++++........
T Consensus 143 VD~S~~mL~~A~~k~~~-~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~ 221 (340)
T PLN02490 143 LDQSPHQLAKAKQKEPL-KECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTF 221 (340)
T ss_pred EECCHHHHHHHHHhhhc-cCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcch
Confidence 79999999999987642 57899999999999988999999999999999999999999999999999987753211111
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 82 YELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
.....+. . ....+.+.+++.++|+++||+.+.+.
T Consensus 222 -~~~r~~~----~-------~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 222 -WLSRFFA----D-------VWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred -hHHHHhh----h-------hhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 1111000 0 01124578999999999999986644
No 22
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.38 E-value=9.9e-13 Score=105.56 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=92.1
Q ss_pred CcChHHHHHhhCCCCC-CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCc
Q psy16312 2 CDNCESILSQAEPPED-TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGET 80 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~-~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~ 80 (245)
+|+|+.+|+.|+.++. .+.+++|.+..++++....++||+|+|+-+|+|++||..+++++.+++||||.+++++.....
T Consensus 87 iD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 87 IDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred ecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 7999999999998765 345678999999998876689999999999999999999999999999999999999877644
Q ss_pred HHHHHHHHHHHHHHhcCCCC-CcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 81 LYELRSAVHLAEMERRGGVA-SHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
...+..+...-.+-.+.... .....+.-++++...+..+|+.+....
T Consensus 167 ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~ 214 (243)
T COG2227 167 KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRK 214 (243)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeec
Confidence 33332222211111111111 112235667888888888888764433
No 23
>KOG4300|consensus
Probab=99.36 E-value=1.9e-12 Score=101.07 Aligned_cols=122 Identities=21% Similarity=0.214 Sum_probs=89.9
Q ss_pred CCcChHHHHHhhCCCCCC--CCcee-EEEcCCCCCC-CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 1 MCDNCESILSQAEPPEDT--EVIYE-KKFVDEEHLP-FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~--~~~i~-f~~~D~~~l~-~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
++|.++.|-+.|.+.+.. .+++. |++++.+++| ++++++|.||+.++|.-..|+.+.|+++.|+|||||++++...
T Consensus 104 ~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 104 CLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 589999999999886543 35666 9999999999 8899999999999999999999999999999999999998877
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCCCCcccCC--CCHHHHHHHHHhCCCeeeEEE
Q psy16312 77 GGETLYELRSAVHLAEMERRGGVASHISPF--TQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~aGF~~~~~~ 127 (245)
+......+...++...-..+ +...+ .--.+..+.|+++-|+.+...
T Consensus 184 va~~y~~~n~i~q~v~ep~~-----~~~~dGC~ltrd~~e~Leda~f~~~~~k 231 (252)
T KOG4300|consen 184 VAGEYGFWNRILQQVAEPLW-----HLESDGCVLTRDTGELLEDAEFSIDSCK 231 (252)
T ss_pred ccccchHHHHHHHHHhchhh-----heeccceEEehhHHHHhhhcccccchhh
Confidence 66655555444443321111 11111 012345567788888875444
No 24
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.35 E-value=1e-12 Score=101.18 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=78.8
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcH
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETL 81 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~ 81 (245)
+|+|+.|++. .++.+...+....+.++++||+|+|+.+|+|++|+..+|++++++|||||+++++++.....
T Consensus 50 ~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~ 121 (161)
T PF13489_consen 50 VDISPQMIEK--------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDP 121 (161)
T ss_dssp EESSHHHHHH--------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSH
T ss_pred EECCHHHHhh--------hhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcch
Confidence 6888888888 13344555555555667899999999999999999999999999999999999998654321
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeE
Q psy16312 82 YELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLT 125 (245)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~ 125 (245)
. ...+... .+.........+.+.+++..+++++||++++
T Consensus 122 -~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 122 -S-PRSFLKW---RYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp -H-HHHHHHC---CGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred -h-hhHHHhc---CCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 1 1111111 0000001223567899999999999999753
No 25
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.32 E-value=4.9e-12 Score=108.51 Aligned_cols=121 Identities=17% Similarity=0.097 Sum_probs=85.7
Q ss_pred CcChHHHHHhhCC--CC-CCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 2 CDNCESILSQAEP--PE-DTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 2 iD~S~~ml~~A~~--~~-~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
+|+|+.|+..++. +. ....++.|+.+|++++|+ +++||+|+|..+++|+.|+..++++++++|+|||.++++++.-
T Consensus 151 iD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i 229 (322)
T PRK15068 151 IDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVI 229 (322)
T ss_pred EcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEe
Confidence 7999999976433 22 223579999999999998 6899999999999999999999999999999999999875321
Q ss_pred CcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 79 ETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
...... ..+ ....+.. .+.....++..++..+|+++||+.+.+..
T Consensus 230 ~~~~~~-~l~---p~~~y~~-~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 230 DGDENT-VLV---PGDRYAK-MRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred cCCCcc-ccC---chhHHhc-CccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 110000 000 0011111 11112246889999999999999876653
No 26
>PRK05785 hypothetical protein; Provisional
Probab=99.31 E-value=9.1e-12 Score=101.73 Aligned_cols=112 Identities=16% Similarity=0.117 Sum_probs=78.2
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCc-
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGET- 80 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~- 80 (245)
+|+|++|++.|+++. .++++|++.+|+++++||+|+|++++||++|+..++++++|+|||.+ .++....+..
T Consensus 80 vD~S~~Ml~~a~~~~------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~-~ile~~~p~~~ 152 (226)
T PRK05785 80 LDYAENMLKMNLVAD------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV-GFIAMGKPDNV 152 (226)
T ss_pred ECCCHHHHHHHHhcc------ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce-EEEEeCCCCcH
Confidence 799999999998652 36789999999999999999999999999999999999999999953 2233222322
Q ss_pred -HHHHHHHHHHHHHHhc-----------CCCCCcccCCCCHHHHHHHHHhCC
Q psy16312 81 -LYELRSAVHLAEMERR-----------GGVASHISPFTQIRDVGSLLTRAG 120 (245)
Q Consensus 81 -~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~aG 120 (245)
...+...+....+... ......+..|++.+++.++++++|
T Consensus 153 ~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~ 204 (226)
T PRK05785 153 IKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA 204 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1222222211111111 111223445788999999999873
No 27
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.28 E-value=1.3e-11 Score=105.06 Aligned_cols=120 Identities=17% Similarity=0.093 Sum_probs=84.5
Q ss_pred CcChHHHHHhhCC---CCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecC-
Q psy16312 2 CDNCESILSQAEP---PEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFG- 77 (245)
Q Consensus 2 iD~S~~ml~~A~~---~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~- 77 (245)
+|+|+.|+..++. ......++.+..+++++++.. .+||+|+|+.+++|++++..+|++++++|||||.|++++..
T Consensus 150 iDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 150 IDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred EcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 7999999976432 222235788999999999875 58999999999999999999999999999999999987532
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 78 GETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
........ .. ...+.. ......+++..++..+|+++||..+.+..
T Consensus 229 ~g~~~~~l--~p---~~ry~k-~~nv~flpS~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 229 DGDLNTVL--VP---KDRYAK-MKNVYFIPSVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred cCcccccc--Cc---hHHHHh-ccccccCCCHHHHHHHHHHCCCeEEEEEe
Confidence 11110000 00 000100 11122346889999999999999876653
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.28 E-value=1.6e-11 Score=100.11 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=85.9
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
+|+|+.|++.|++++.. ..++++.+.|+...+++ ++||+|++..+++|++++...+++++++|||||++++..+..
T Consensus 29 id~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 29 YTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred EECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEccc
Confidence 68999999999886532 34689999999777765 689999999999999999999999999999999999886432
Q ss_pred CcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 79 ETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
..... . . .......+.+..+|.+++.++||+++...
T Consensus 108 ~~~~~----~--------~-~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 108 NLLSA----I--------E-HEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred ccCcc----c--------c-ccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 21000 0 0 00111225678899999999999986554
No 29
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.27 E-value=3.9e-11 Score=98.42 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=90.1
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
+|+|+.|++.|++++.. ..++.+.++|+.++++.+++||+|+++.+++++.++...+.++.++|+|||.+++..+..
T Consensus 82 ~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 82 LDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred EeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 69999999999987642 356899999999988877899999999999999999999999999999999987765432
Q ss_pred Cc---HHHHHHHHHHHHH----HhcCC-------CCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 79 ET---LYELRSAVHLAEM----ERRGG-------VASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 79 ~~---~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
.. +......+..... ..+.. ..++...+++.+++.++|+++||+.+.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 162 PTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred CCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeee
Confidence 22 1111111110000 00000 011123456788999999999999866553
No 30
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.27 E-value=3.8e-11 Score=97.49 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=89.8
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCC-C-
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGG-E- 79 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~-~- 79 (245)
+|+++.+++.++++.....++++.++|+.++++.+++||+|++++++++++++..++++++++|+|||++++..+.. .
T Consensus 70 iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 149 (223)
T TIGR01934 70 VDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPAN 149 (223)
T ss_pred EECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCc
Confidence 68999999999887653356899999999998877899999999999999999999999999999999988764322 1
Q ss_pred -cHHHHHHHHHHHHHHhcCC----C-------CCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 80 -TLYELRSAVHLAEMERRGG----V-------ASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
++......+.......... . .+....+.+..+|.++|.++||+.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 209 (223)
T TIGR01934 150 ALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYR 209 (223)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceee
Confidence 1222222211110000000 0 0111235678899999999999986555
No 31
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.23 E-value=4.3e-10 Score=94.51 Aligned_cols=117 Identities=17% Similarity=0.234 Sum_probs=84.4
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcH
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETL 81 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~ 81 (245)
+|+|+.|++.|+++.+ ++.|.++|+.++|+++++||+|++.++ ...+++++|+|||||++++.++++..+
T Consensus 118 iD~s~~~l~~A~~~~~---~~~~~~~d~~~lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~~~~l 187 (272)
T PRK11088 118 LDISKVAIKYAAKRYP---QVTFCVASSHRLPFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPGPRHL 187 (272)
T ss_pred ECCCHHHHHHHHHhCC---CCeEEEeecccCCCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCCCcch
Confidence 7999999999987754 789999999999999999999998764 234689999999999999998887777
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEEEeEEEeCCCHHHHHHHH
Q psy16312 82 YELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDL 145 (245)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~~l 145 (245)
.++..... .. ... ...... ...||+.+..+.....+.+.. .+.+..+
T Consensus 188 ~el~~~~~-------~~--~~~--~~~~~~-----~~~gF~~~~~~~~~~~~~l~~-~~~~~ll 234 (272)
T PRK11088 188 FELKGLIY-------DE--VRL--HAPEAE-----QLEGFELQHSERLAYPMRLTG-SEAVALL 234 (272)
T ss_pred HHHHHHhc-------cc--ccc--cccchh-----hccCCCeeeEEEEEEEEEeCH-HHHHHHH
Confidence 66544321 00 110 001111 236999888887777777755 4444433
No 32
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.23 E-value=3.3e-11 Score=99.34 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=81.9
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|+|+.|++.|+++... ..+++++++|+.+++++ .+|+|++++++||+++ +..++++++++|+|||.++++..
T Consensus 85 vD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 85 IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 79999999999886442 24689999999998875 5899999999999964 57899999999999999998753
Q ss_pred CC-Cc--H-HHHHHHHHHHHHHhcCCCC-----------CcccCCCCHHHHHHHHHhCCCee
Q psy16312 77 GG-ET--L-YELRSAVHLAEMERRGGVA-----------SHISPFTQIRDVGSLLTRAGFNM 123 (245)
Q Consensus 77 ~~-~~--~-~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~aGF~~ 123 (245)
.. .. . ..+...+.... .. .+.. .......+.+++.++++++||..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~ 222 (239)
T TIGR00740 163 FRFEDTKINHLLIDLHHQFK-RA-NGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSH 222 (239)
T ss_pred ccCCCHhHHHHHHHHHHHHH-HH-cCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCch
Confidence 21 11 1 11111111110 00 0100 01223468889999999999975
No 33
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.21 E-value=2.7e-11 Score=100.30 Aligned_cols=72 Identities=13% Similarity=0.241 Sum_probs=62.1
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+|+.|++.|++++.. ..+++++++|+.+++++ .||+|++++++||+++ ...++++++++|||||.|+++.
T Consensus 88 vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 88 IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 79999999999987642 24799999999998875 5999999999999964 4579999999999999998874
No 34
>PRK06202 hypothetical protein; Provisional
Probab=99.20 E-value=1.6e-10 Score=94.82 Aligned_cols=123 Identities=11% Similarity=-0.029 Sum_probs=84.8
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCCh--hHHHHHHHhhhcCCcEEEEEecCCC
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNL--PGCFQQVLKCLRQDGVFLASIFGGE 79 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~--~~~l~~i~r~LkpGG~l~~~~~~~~ 79 (245)
+|+|+.|++.|+++... .++.+.+.+++.++..+++||+|+|+++|||++|. ..++++++++++ |.+++..+...
T Consensus 94 vD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 94 IDPDPRAVAFARANPRR-PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred EcCCHHHHHHHHhcccc-CCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 79999999999987643 46888888888888777899999999999999885 479999999998 55555554443
Q ss_pred cHHHHHHHHHHHHHH--hc--CCCCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 80 TLYELRSAVHLAEME--RR--GGVASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 80 ~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
............... .+ .....+...+++.+++.+++++ ||++.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~ 222 (232)
T PRK06202 171 RLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQWP 222 (232)
T ss_pred HHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEeccc
Confidence 222111111100000 00 0111233457899999999999 999865553
No 35
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.16 E-value=9.7e-12 Score=88.26 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=43.5
Q ss_pred CcChHHHHHhhCCCCCCC--CceeEEEcCCCCCC-C-CCCccceeeecccccccCChhHHHHHHHhhhcCCcEE
Q psy16312 2 CDNCESILSQAEPPEDTE--VIYEKKFVDEEHLP-F-AENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVF 71 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~--~~i~f~~~D~~~l~-~-~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l 71 (245)
+|+|+.|++.|++++... .+......+..+.. . ..++||+|+++.++||++++..++++++++|||||+|
T Consensus 26 ~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 26 VDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred EECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 799999999999987532 22333333333322 1 1269999999999999999999999999999999986
No 36
>KOG1270|consensus
Probab=99.16 E-value=6.9e-11 Score=95.80 Aligned_cols=121 Identities=15% Similarity=0.140 Sum_probs=85.0
Q ss_pred CcChHHHHHhhCCCCCC----CC----ceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEE
Q psy16312 2 CDNCESILSQAEPPEDT----EV----IYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLA 73 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~----~~----~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~ 73 (245)
||+|+.|++.|+++... .. +++|.+.|++.+. +.||.|+|..+++|+.||..++..+.++|||||.+++
T Consensus 117 ID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 117 IDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred ecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEe
Confidence 79999999999997432 12 4677788888775 4599999999999999999999999999999999999
Q ss_pred EecCCCcHHHHHHHHHHHHHHhcCCC-CCcccCCCCHHHHHHHHHhCCCeeeE
Q psy16312 74 SIFGGETLYELRSAVHLAEMERRGGV-ASHISPFTQIRDVGSLLTRAGFNMLT 125 (245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGF~~~~ 125 (245)
++....-+......+..--+.+.-+. ..+...|.++.++..++..+++++..
T Consensus 194 ttinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~ 246 (282)
T KOG1270|consen 194 TTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVND 246 (282)
T ss_pred eehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhh
Confidence 97544322221111110001111111 12223478999999999998887643
No 37
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.15 E-value=3.4e-10 Score=92.24 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=89.0
Q ss_pred CcChHHHHHhhCCCCCC-CC-ceeEEEcCCCCCCCC-CCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 2 CDNCESILSQAEPPEDT-EV-IYEKKFVDEEHLPFA-ENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~-~i~f~~~D~~~l~~~-~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
+|+|+.|++.+++++.. .. ++.+.+.|+.+++.. +++||+|+++.+++++.++..+++++.++|+|||.++++.+..
T Consensus 73 iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 73 IDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred EeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 68999999999886542 12 588999999887654 3789999999999999999999999999999999998887644
Q ss_pred CcHHHHHHHHHHHHHHhc-CCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 79 ETLYELRSAVHLAEMERR-GGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
.................+ ........++.+..++.++++++||+++.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 153 TPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred CchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 321111111100000000 0111122346688899999999999987655
No 38
>KOG3010|consensus
Probab=99.14 E-value=5.8e-10 Score=89.39 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=56.4
Q ss_pred CCcChHHHHHhhCCCCCC-C--CceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCc-EEEEEec
Q psy16312 1 MCDNCESILSQAEPPEDT-E--VIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDG-VFLASIF 76 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~-~--~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG-~l~~~~~ 76 (245)
.+|+|+.||+.|++..+. . ....+-..++..|--.+++.|+|+|..++||+ |.+.++++++|+||+.| .+++-..
T Consensus 60 atD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 60 ATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred eecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEEEc
Confidence 379999999999987652 1 12223333344443347999999999999999 99999999999999777 6555444
Q ss_pred C
Q psy16312 77 G 77 (245)
Q Consensus 77 ~ 77 (245)
.
T Consensus 139 ~ 139 (261)
T KOG3010|consen 139 N 139 (261)
T ss_pred c
Confidence 4
No 39
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.10 E-value=1.9e-10 Score=92.08 Aligned_cols=107 Identities=15% Similarity=0.272 Sum_probs=76.7
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccC--ChhHHHHHHHhhhcCCcEEEE-Eec
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN--NLPGCFQQVLKCLRQDGVFLA-SIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~--d~~~~l~~i~r~LkpGG~l~~-~~~ 76 (245)
+|+|+.|++.|+++.. +..++++.++|+.++++. ++||+|+|+.++||++ +...++++++++|||||++++ ..+
T Consensus 58 vD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 58 WDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred EeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 7999999999987543 224688999999988775 6899999999999986 467999999999999999654 433
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 77 GGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
...... .........+..++.+.++ ||+++...
T Consensus 137 ~~~~~~----------------~~~~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 137 DTADYP----------------CTVGFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred cCCCCC----------------CCCCCCCccCHHHHHHHhC--CCeEEEee
Confidence 221110 0001112346788888876 88865443
No 40
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.09 E-value=5.5e-11 Score=91.17 Aligned_cols=75 Identities=23% Similarity=0.287 Sum_probs=66.8
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCC--CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecC
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLP--FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~--~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~ 77 (245)
+|+|+.|++.|++++. ...+++|.++|+++++ ++ +.||+|++..+++|+.++..+++++.++|++||.+++..+.
T Consensus 34 vD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 34 VDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 7999999999999532 2348999999999987 66 89999999999999999999999999999999999888654
No 41
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.07 E-value=1.3e-09 Score=89.33 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=88.1
Q ss_pred CcChHHHHHhhCCCCCC-CCceeEEEcCCCCCC-CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCC
Q psy16312 2 CDNCESILSQAEPPEDT-EVIYEKKFVDEEHLP-FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGE 79 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~-~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~ 79 (245)
+|+|+.+++.|+++... ..++.+...|+.+++ ...+.||+|++..++++++++..+++.+.++|+|||+++++.+...
T Consensus 76 iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~ 155 (233)
T PRK05134 76 IDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCC
Confidence 68999999999876431 235788888888765 3357999999999999999999999999999999999998876543
Q ss_pred cHHHHHHHHHHHHHHhc-CCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 80 TLYELRSAVHLAEMERR-GGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
........+........ ........++.+..++.++|+.+||+++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 156 LKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 22111111100000000 0111123346788999999999999987554
No 42
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.06 E-value=2.9e-10 Score=95.02 Aligned_cols=74 Identities=11% Similarity=0.019 Sum_probs=63.2
Q ss_pred CcChHHHHHhhCCCCCC-----------------------------CCceeEEEcCCCCCCCCCCccceeeecccccccC
Q psy16312 2 CDNCESILSQAEPPEDT-----------------------------EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN 52 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-----------------------------~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~ 52 (245)
+|+|+.||+.|++..-. ..+|.|.++|+.+.++++++||+|+|..+|+|++
T Consensus 138 ~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~ 217 (264)
T smart00138 138 TDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD 217 (264)
T ss_pred EECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC
Confidence 69999999999986410 1368999999999887778999999999999996
Q ss_pred C--hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 53 N--LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 53 d--~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+ ..+++++++++|+|||++++..
T Consensus 218 ~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 218 EPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4 4479999999999999999863
No 43
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.00 E-value=6.2e-10 Score=100.72 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=80.6
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCC--CCCCCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEEecC
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEE--HLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~--~l~~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~~~~ 77 (245)
+|+|+.|++.+++.....+++.++++|+. .+++++++||+|+|+.++||+++ ...++++++++|||||++++....
T Consensus 65 iD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 65 LDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred EeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 79999999988654433467999999996 46777889999999999999987 468999999999999999887422
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeE
Q psy16312 78 GETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLT 125 (245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~ 125 (245)
......+. . ......+.....|.+++.++||....
T Consensus 145 ~~~~~~~~------------~-~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 145 FHQSGDSK------------R-KNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred CCCCCccc------------c-cCCCCeecChHHHHHHHHHheeccCC
Confidence 11000000 0 00112234577888899999987654
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.98 E-value=7.6e-11 Score=84.03 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=57.3
Q ss_pred CcChHHHHHhhCCCCC-CCCceeEEEcCCCCCCCCCCccceeeec-ccccccCC--hhHHHHHHHhhhcCCc
Q psy16312 2 CDNCESILSQAEPPED-TEVIYEKKFVDEEHLPFAENSVDLLISN-LALHWVNN--LPGCFQQVLKCLRQDG 69 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~-~~~~i~f~~~D~~~l~~~~~~FD~Vis~-~~l~~~~d--~~~~l~~i~r~LkpGG 69 (245)
+|+|+.|++.|+++.. ...+++|+++|+.++++.+++||+|+|. .+++|+.+ ...++++++++|||||
T Consensus 30 vD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 30 VDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 7999999999998764 2348999999999999888899999995 44999864 5589999999999998
No 45
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.97 E-value=1.1e-09 Score=88.95 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=81.1
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecccccccC--ChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN--NLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~--d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|+|+.|++.|+++... ..++.|.++|+.+++ ++||+|++..+++|++ ++..+++++++++++++.+.+..
T Consensus 83 vD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~- 158 (219)
T TIGR02021 83 VDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP- 158 (219)
T ss_pred EECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC-
Confidence 79999999999987642 137899999998876 7899999999998875 35688999999998776665542
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCC-CCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 77 GGETLYELRSAVHLAEMERRGGV-ASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
..........+. ..+... ......+.+.+++.++++++||+++....
T Consensus 159 -~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 159 -KTAWLAFLKMIG----ELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred -CchHHHHHHHHH----hhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence 212111111111 111111 11112246889999999999999876653
No 46
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.97 E-value=4.4e-10 Score=81.31 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=60.0
Q ss_pred CcChHHHHHhhCCCC---CCCCceeEEEcCC-CCCCCCCCccceeeecc-ccccc---CChhHHHHHHHhhhcCCcEEEE
Q psy16312 2 CDNCESILSQAEPPE---DTEVIYEKKFVDE-EHLPFAENSVDLLISNL-ALHWV---NNLPGCFQQVLKCLRQDGVFLA 73 (245)
Q Consensus 2 iD~S~~ml~~A~~~~---~~~~~i~f~~~D~-~~l~~~~~~FD~Vis~~-~l~~~---~d~~~~l~~i~r~LkpGG~l~~ 73 (245)
+|+|+.|++.|++++ ....+++|+++|+ ...... +.||+|++.. +++++ .+...+++++++.|+|||++++
T Consensus 31 vD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 31 VDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp EESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 799999999999987 2357899999999 444443 6799999998 55544 3467899999999999999998
Q ss_pred Ee
Q psy16312 74 SI 75 (245)
Q Consensus 74 ~~ 75 (245)
++
T Consensus 110 ~~ 111 (112)
T PF12847_consen 110 NT 111 (112)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 47
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.95 E-value=7.1e-09 Score=82.73 Aligned_cols=118 Identities=16% Similarity=0.088 Sum_probs=77.0
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCC-C-CCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCC
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEH-L-PFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGE 79 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~-l-~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~ 79 (245)
+|+|+.|++.|+++ +++++++|+++ + ++++++||+|+|+.++||++|+..+++++.++++ .++++.+...
T Consensus 42 iD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~ 113 (194)
T TIGR02081 42 IEIDQDGVLACVAR-----GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFPNFG 113 (194)
T ss_pred EeCCHHHHHHHHHc-----CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChh
Confidence 69999999998643 46788999876 5 3667899999999999999999999999888755 4455543221
Q ss_pred cHHHHHHHHHHHHHHhcCCC-----CCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 80 TLYELRSAVHLAEMERRGGV-----ASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
........+........... ......+.+.+++.++++++||+++...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 114 YWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred HHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 11111111100000000000 0111236789999999999999986555
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.92 E-value=4.2e-09 Score=92.43 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=80.0
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccC--ChhHHHHHHHhhhcCCcEEEEEecCCC
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN--NLPGCFQQVLKCLRQDGVFLASIFGGE 79 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~--d~~~~l~~i~r~LkpGG~l~~~~~~~~ 79 (245)
+|+|+.|++.|+++... .++++.+.|..++ +++||+|+|..+++|+. ++...+++++++|||||++++..++..
T Consensus 196 iDlS~~~l~~A~~~~~~-l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 196 VTISAEQQKLAQERCAG-LPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred EeCCHHHHHHHHHHhcc-CeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 79999999999988753 4588899998776 37899999999999985 457899999999999999998876543
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 80 TLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
........+. ..+ ..| ...+++..++...++ .||.+..+.
T Consensus 272 ~~~~~~~~~i----~~y--ifp-~g~lps~~~i~~~~~-~~~~v~d~~ 311 (383)
T PRK11705 272 KTDTNVDPWI----NKY--IFP-NGCLPSVRQIAQASE-GLFVMEDWH 311 (383)
T ss_pred CCCCCCCCCc----eee--ecC-CCcCCCHHHHHHHHH-CCcEEEEEe
Confidence 2111100110 000 001 123567788887766 589875543
No 49
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.92 E-value=8.8e-10 Score=86.37 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=60.2
Q ss_pred CCcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCC---hhHHHHHHHhhhcCCcEEEEEecC
Q psy16312 1 MCDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN---LPGCFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d---~~~~l~~i~r~LkpGG~l~~~~~~ 77 (245)
.+|+|+..|+.|+++....++|+|.++|+.... ++++||+|+.+-+++|+.+ ...++..+...|+|||.+++..+.
T Consensus 70 avDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 70 AVDISPRALARARERLAGLPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp EEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred EEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 379999999999999887789999999997754 4589999999999999976 346899999999999999998653
No 50
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.90 E-value=1.3e-08 Score=86.86 Aligned_cols=126 Identities=18% Similarity=0.222 Sum_probs=79.7
Q ss_pred CcChHHHHHhhCCCCCC-------CCceeEEEcCCCCCCCCCCccceeeecccccccCChh--HHHHHHHhhhcCCcEEE
Q psy16312 2 CDNCESILSQAEPPEDT-------EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLP--GCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-------~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~--~~l~~i~r~LkpGG~l~ 72 (245)
+|+|+.|++.|++++.. ..++.|.++|++++ +++||+|+|..+++|+++.. .+++.+.+ +.+||. +
T Consensus 172 vD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-i 246 (315)
T PLN02585 172 SDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-I 246 (315)
T ss_pred EECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-E
Confidence 79999999999987542 24678999998765 47899999999998887633 45566654 455544 4
Q ss_pred EEecCCCcHH-HHHHHHHHHHHHhcCCCCC-cccCCCCHHHHHHHHHhCCCeeeEEEEEeEEEeCCC
Q psy16312 73 ASIFGGETLY-ELRSAVHLAEMERRGGVAS-HISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPS 137 (245)
Q Consensus 73 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~~~~~~~~~~~~~~~ 137 (245)
++. .+.+.. .+...+. ..+.+... ....+.+.+++.++|+++||++...+.....++|..
T Consensus 247 Is~-~p~~~~~~~l~~~g----~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~~~~y~~~ 308 (315)
T PLN02585 247 ISF-APKTLYYDILKRIG----ELFPGPSKATRAYLHAEADVERALKKAGWKVARREMTATQFYFSR 308 (315)
T ss_pred EEe-CCcchHHHHHHHHH----hhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEeecceeHHh
Confidence 443 233321 1111111 11111111 111245789999999999999877766555555533
No 51
>PRK06922 hypothetical protein; Provisional
Probab=98.88 E-value=4.6e-09 Score=96.14 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=63.1
Q ss_pred CcChHHHHHhhCCCCCC-CCceeEEEcCCCCCC--CCCCccceeeecccccccC-------------ChhHHHHHHHhhh
Q psy16312 2 CDNCESILSQAEPPEDT-EVIYEKKFVDEEHLP--FAENSVDLLISNLALHWVN-------------NLPGCFQQVLKCL 65 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~--~~~~~FD~Vis~~~l~~~~-------------d~~~~l~~i~r~L 65 (245)
+|+|+.|++.|+++... ..++.++++|+.++| +++++||+|+++.++||+. ++..+|++++++|
T Consensus 448 IDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVL 527 (677)
T PRK06922 448 IDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVL 527 (677)
T ss_pred EECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHc
Confidence 79999999999886542 246788999999888 7789999999999999752 4578999999999
Q ss_pred cCCcEEEEEe
Q psy16312 66 RQDGVFLASI 75 (245)
Q Consensus 66 kpGG~l~~~~ 75 (245)
||||++++..
T Consensus 528 KPGGrLII~D 537 (677)
T PRK06922 528 KPGGRIIIRD 537 (677)
T ss_pred CCCcEEEEEe
Confidence 9999998874
No 52
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.83 E-value=2.5e-08 Score=85.20 Aligned_cols=119 Identities=12% Similarity=0.093 Sum_probs=78.1
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecccccccCCh--hHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNL--PGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~--~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|+ +.|++.|+++... ..+++++.+|+.+.+++ .+|+|++..++|...+. ..++++++++|+|||++++..+
T Consensus 179 ~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 179 LNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred Eec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 576 6899998775431 25799999999876665 37999999999877553 4789999999999999987643
Q ss_pred --CCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEE
Q psy16312 77 --GGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTI 126 (245)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~ 126 (245)
............... ... ........+.+.++|.++|+++||+.+.+
T Consensus 256 ~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 256 VIDDPENPNFDYLSHYI--LGA-GMPFSVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred ccCCCCCchhhHHHHHH--HHc-ccccccccCCCHHHHHHHHHHcCCCeeEe
Confidence 221111111111110 000 11111223556799999999999997643
No 53
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.83 E-value=2.7e-09 Score=85.29 Aligned_cols=109 Identities=9% Similarity=0.100 Sum_probs=76.8
Q ss_pred CcChHHHHHhhCCCCCC-CCceeEEEcCCCCCCCCCCccceeeecccccccC--ChhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 2 CDNCESILSQAEPPEDT-EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN--NLPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~--d~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
+|+|+.|++.++++... ..++.+.++|+...+++ ++||+|+|+.++|+++ +....+++++++|||||++++..+..
T Consensus 58 iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~ 136 (195)
T TIGR00477 58 WDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMD 136 (195)
T ss_pred EECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 79999999998775431 23477888898877765 6899999999999985 45689999999999999966554321
Q ss_pred CcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 79 ETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
... . ...+......+..++.+++. +|+++....
T Consensus 137 ~~~------~---------~~~~~~~~~~~~~el~~~f~--~~~~~~~~e 169 (195)
T TIGR00477 137 TAD------Y---------PCHMPFSFTFKEDELRQYYA--DWELLKYNE 169 (195)
T ss_pred cCC------C---------CCCCCcCccCCHHHHHHHhC--CCeEEEeec
Confidence 110 0 00111122467888988885 588766653
No 54
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.81 E-value=3.6e-08 Score=82.65 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=74.2
Q ss_pred CcChHHHHHhhCCCCC---CCCceeEEEcCCCCCCCCCCccceeeeccccccc--CChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPED---TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWV--NNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~---~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~--~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
|.+|+...+.|++++. ...++++.++|..+++. +||.|+|..++.|+ .+....++++.++|||||++++..+
T Consensus 91 itlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 91 ITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp EES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred EECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 5789999998876543 22468999999887764 89999999999999 4678999999999999999987754
Q ss_pred CCCcHHHHHH-----HHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 77 GGETLYELRS-----AVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 77 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
+......... .|. ..+ ..| ...+++..++...++++||++..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~i----~ky--iFP-gg~lps~~~~~~~~~~~~l~v~~~~ 216 (273)
T PF02353_consen 168 THRDPPYHAERRSSSDFI----RKY--IFP-GGYLPSLSEILRAAEDAGLEVEDVE 216 (273)
T ss_dssp EE--HHHHHCTTCCCHHH----HHH--TST-TS---BHHHHHHHHHHTT-EEEEEE
T ss_pred ccccccchhhcCCCceEE----EEe--eCC-CCCCCCHHHHHHHHhcCCEEEEEEE
Confidence 4322111110 111 111 011 2235678888888999999986554
No 55
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.78 E-value=4.4e-09 Score=84.47 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=62.1
Q ss_pred CCcChHHHHHhhCCCCC--CCCceeEEEcCC-CCCC--CCCCccceeeecccccccCC--------hhHHHHHHHhhhcC
Q psy16312 1 MCDNCESILSQAEPPED--TEVIYEKKFVDE-EHLP--FAENSVDLLISNLALHWVNN--------LPGCFQQVLKCLRQ 67 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~--~~~~i~f~~~D~-~~l~--~~~~~FD~Vis~~~l~~~~d--------~~~~l~~i~r~Lkp 67 (245)
.+|+|+.|++.|+++.. ...++.|+++|+ +.++ +++++||+|++++...|... ...++++++++|||
T Consensus 69 gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp 148 (202)
T PRK00121 69 GIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKP 148 (202)
T ss_pred EEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCC
Confidence 37999999999987543 235799999999 7776 66789999999988777642 46789999999999
Q ss_pred CcEEEEEe
Q psy16312 68 DGVFLASI 75 (245)
Q Consensus 68 GG~l~~~~ 75 (245)
||++++.+
T Consensus 149 gG~l~i~~ 156 (202)
T PRK00121 149 GGEIHFAT 156 (202)
T ss_pred CCEEEEEc
Confidence 99999886
No 56
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.74 E-value=2.4e-08 Score=81.58 Aligned_cols=122 Identities=12% Similarity=0.016 Sum_probs=76.2
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|+|+.|++.|++++.. ..++.|.++|++ ..+++||+|++..+++|+++ ...+++++.+.+++++.+.+.
T Consensus 91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~-- 165 (230)
T PRK07580 91 SDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFA-- 165 (230)
T ss_pred EECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEEC--
Confidence 79999999999986542 136899999954 33578999999999988764 447788888876544443322
Q ss_pred CCCcHHHHHHHHHHHHHHhcCC-CCCcccCCCCHHHHHHHHHhCCCeeeEEEEEeEE
Q psy16312 77 GGETLYELRSAVHLAEMERRGG-VASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIV 132 (245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~~~~~ 132 (245)
...+.......+. ..+.. .......+.+..++.+++.++||++.........
T Consensus 166 ~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 166 PYTPLLALLHWIG----GLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred CccHHHHHHHHhc----cccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence 1211111111110 11110 0111223567889999999999998766544433
No 57
>KOG2361|consensus
Probab=98.74 E-value=3.2e-08 Score=79.50 Aligned_cols=127 Identities=21% Similarity=0.279 Sum_probs=89.2
Q ss_pred CCcChHHHHHhhCCCCCC-CCceeEEEcCCCC--C--CCCCCccceeeecccccccC--ChhHHHHHHHhhhcCCcEEEE
Q psy16312 1 MCDNCESILSQAEPPEDT-EVIYEKKFVDEEH--L--PFAENSVDLLISNLALHWVN--NLPGCFQQVLKCLRQDGVFLA 73 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~--l--~~~~~~FD~Vis~~~l~~~~--d~~~~l~~i~r~LkpGG~l~~ 73 (245)
++|.||..++..+++... ..++...+.|+.. + |...+++|+|++.++|--++ ....++.+++++|||||.+++
T Consensus 102 acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llf 181 (264)
T KOG2361|consen 102 ACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLF 181 (264)
T ss_pred EcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEE
Confidence 379999999999887552 2456666777653 2 35579999999999998884 356899999999999999999
Q ss_pred EecCCCcHHHHHHHHHHHHHHhcCCC--CCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 74 SIFGGETLYELRSAVHLAEMERRGGV--ASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
-.++...+..++..-... +...... ......|.+.+++..++.++||..+....
T Consensus 182 rDYg~~DlaqlRF~~~~~-i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~ 237 (264)
T KOG2361|consen 182 RDYGRYDLAQLRFKKGQC-ISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEV 237 (264)
T ss_pred eecccchHHHHhccCCce-eecceEEccCCceeeeccHHHHHHHHHhcccchhcccc
Confidence 998877665543221000 0000001 11122367899999999999999866554
No 58
>PLN03075 nicotianamine synthase; Provisional
Probab=98.73 E-value=1.3e-08 Score=85.41 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=61.9
Q ss_pred CcChHHHHHhhCCCCC---C-CCceeEEEcCCCCCCCCCCccceeeeccccccc--CChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED---T-EVIYEKKFVDEEHLPFAENSVDLLISNLALHWV--NNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~---~-~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~--~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+++.|++.|++.+. + ..+++|.++|+.+.+...+.||+|++. +++++ .++.+++++++++|+|||.+++..
T Consensus 155 iD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 155 FDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 6999999999999763 1 357999999998865334789999999 77666 689999999999999999999875
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.70 E-value=8.3e-08 Score=75.53 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=72.0
Q ss_pred CcChHHHHHhhCCCCCC-CCceeEEEcCCCCCCCCCCccceeeecccccccCC---------------------hhHHHH
Q psy16312 2 CDNCESILSQAEPPEDT-EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN---------------------LPGCFQ 59 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d---------------------~~~~l~ 59 (245)
+|+|+.|++.|+++... ..++++.++|+.+.+ .++||+|+++..+++.++ ....++
T Consensus 47 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (179)
T TIGR00537 47 TDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLD 124 (179)
T ss_pred EECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHH
Confidence 79999999999886532 246888999987654 359999999987766643 246799
Q ss_pred HHHhhhcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 60 QVLKCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 60 ~i~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
++.++|+|||++++...... ...++...|.+.||+...+..
T Consensus 125 ~~~~~Lk~gG~~~~~~~~~~----------------------------~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 125 ELPEILKEGGRVQLIQSSLN----------------------------GEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred hHHHhhCCCCEEEEEEeccC----------------------------ChHHHHHHHHhCCCeEEEEEE
Confidence 99999999999888752211 134567788889998765554
No 60
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.70 E-value=1.4e-08 Score=85.96 Aligned_cols=108 Identities=10% Similarity=0.159 Sum_probs=76.9
Q ss_pred CcChHHHHHhhCCCCCC-CCceeEEEcCCCCCCCCCCccceeeecccccccC--ChhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 2 CDNCESILSQAEPPEDT-EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN--NLPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~--d~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
+|+|+.|++.+++++.. ..++++.+.|+...++ +++||+|+|+.++|+++ +...+++++.++|+|||++++..+..
T Consensus 148 vD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~ 226 (287)
T PRK12335 148 VDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMD 226 (287)
T ss_pred EECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 79999999999876542 2478899999988766 58999999999999985 56689999999999999976643211
Q ss_pred CcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 79 ETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
.. . . .. ........+..++.+.+. +|+++...
T Consensus 227 ~~--~----~--------~~-~~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 227 TE--D----Y--------PC-PMPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred cc--c----C--------CC-CCCCCcccCHHHHHHHhC--CCEEEEEe
Confidence 11 0 0 00 111122457888888875 48775544
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.67 E-value=1.7e-08 Score=84.27 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=71.1
Q ss_pred eeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecC-CCcHHHHHHHHHHHHHHhcCCCC
Q psy16312 22 YEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFG-GETLYELRSAVHLAEMERRGGVA 100 (245)
Q Consensus 22 i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 100 (245)
+.+.-.-++++|. .+.||+|+|..+|.|..+|-..|.+++..|+|||.+++.+.. ++... ....+..+|.. .
T Consensus 167 ~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~-----~~L~P~~rYa~-m 239 (315)
T PF08003_consen 167 VFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDEN-----TVLVPEDRYAK-M 239 (315)
T ss_pred EEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc-----eEEccCCcccC-C
Confidence 3344367888887 689999999999999999999999999999999999987532 11100 00111122222 2
Q ss_pred CcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 101 SHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
+.+.-.+|...+..+|+.+||..+.+.
T Consensus 240 ~nv~FiPs~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 240 RNVWFIPSVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred CceEEeCCHHHHHHHHHHcCCceEEEe
Confidence 223335799999999999999987655
No 62
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.63 E-value=3.9e-08 Score=77.86 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=59.0
Q ss_pred CCcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 1 MCDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
.+|+|+.|++.|+++.. ...+++|+++|+++++. +++||+|+|+. +.++..++++++++|||||++++..
T Consensus 74 giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 74 LVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 37999999999988643 23459999999999877 68999999975 3578899999999999999998774
No 63
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.62 E-value=2.6e-08 Score=79.54 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=60.5
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCC---CCCCccceeeecccccccCCh--------hHHHHHHHhhhcCC
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLP---FAENSVDLLISNLALHWVNNL--------PGCFQQVLKCLRQD 68 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~---~~~~~FD~Vis~~~l~~~~d~--------~~~l~~i~r~LkpG 68 (245)
+|+|+.|++.|+++.. +..|++++++|+..++ +++++||.|++++...|.... ..++++++++||||
T Consensus 46 vD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg 125 (194)
T TIGR00091 46 IEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG 125 (194)
T ss_pred EEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence 7999999999987543 2358999999998754 445799999999888886542 46899999999999
Q ss_pred cEEEEEe
Q psy16312 69 GVFLASI 75 (245)
Q Consensus 69 G~l~~~~ 75 (245)
|.|++.+
T Consensus 126 G~l~~~t 132 (194)
T TIGR00091 126 GVIHFKT 132 (194)
T ss_pred CEEEEEe
Confidence 9999886
No 64
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.61 E-value=9.9e-09 Score=81.77 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=79.0
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCC-CC-CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCC
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEH-LP-FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGE 79 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~-l~-~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~ 79 (245)
+|+|++|++.|.++--- =+..++|+.. ++ ..++.||+|++..+|.++-+.+.++.-+..+|+|||.|+|++-.-.
T Consensus 153 vDiS~nMl~kA~eKg~Y---D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~ 229 (287)
T COG4976 153 VDISENMLAKAHEKGLY---DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLP 229 (287)
T ss_pred CchhHHHHHHHHhccch---HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccC
Confidence 79999999999887431 1123444432 22 3468899999999999999999999999999999999999852110
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 80 TLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
. +.. +. ..++....++...++.++...||+++.++.
T Consensus 230 ~--~~~--f~---------l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 230 D--DGG--FV---------LGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred C--CCC--ee---------cchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 0 000 10 122222346788899999999999977664
No 65
>KOG1541|consensus
Probab=98.59 E-value=1.8e-07 Score=74.30 Aligned_cols=73 Identities=26% Similarity=0.352 Sum_probs=59.4
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCC-CCCCCCCccceeeecccccccCC-------hh----HHHHHHHhhhcCCc
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEE-HLPFAENSVDLLISNLALHWVNN-------LP----GCFQQVLKCLRQDG 69 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~-~l~~~~~~FD~Vis~~~l~~~~d-------~~----~~l~~i~r~LkpGG 69 (245)
+|+|+.||+.|.++.- .-.+..+||- -+||.+++||.|||..++||+-+ |. .++..++.+|++|+
T Consensus 78 vDiSpsML~~a~~~e~---egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~ 154 (270)
T KOG1541|consen 78 VDISPSMLEQAVEREL---EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGA 154 (270)
T ss_pred ecCCHHHHHHHHHhhh---hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCc
Confidence 7999999999986321 2357888884 58999999999999999999843 33 45778999999999
Q ss_pred EEEEEecC
Q psy16312 70 VFLASIFG 77 (245)
Q Consensus 70 ~l~~~~~~ 77 (245)
+.++....
T Consensus 155 raV~QfYp 162 (270)
T KOG1541|consen 155 RAVLQFYP 162 (270)
T ss_pred eeEEEecc
Confidence 99998653
No 66
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.58 E-value=9.2e-08 Score=76.90 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=56.6
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccC--ChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN--NLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~--d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+|+.|++.|+++.+ ++.+.++|+.+ |+++++||+|+|+.+|+|++ +...+++++++++ ++.+++..
T Consensus 73 iDiS~~~l~~A~~~~~---~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 73 VEINEYAVEKAKAYLP---NINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EECCHHHHHHHHhhCC---CCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 7999999999988764 57889999988 88889999999999999995 3567888888887 45666654
No 67
>PRK04266 fibrillarin; Provisional
Probab=98.56 E-value=2.6e-07 Score=75.34 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=51.2
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCC----CCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHL----PFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l----~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+|+.|++.+.+++....|+.++.+|+... ++. ++||+|++.....| ....++++++++|||||++++++
T Consensus 102 vD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~~p~--~~~~~L~~~~r~LKpGG~lvI~v 176 (226)
T PRK04266 102 VEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVAQPN--QAEIAIDNAEFFLKDGGYLLLAI 176 (226)
T ss_pred EECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCCChh--HHHHHHHHHHHhcCCCcEEEEEE
Confidence 6999999987655544335799999998752 233 57999986533111 12356899999999999999865
No 68
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=1.2e-07 Score=78.92 Aligned_cols=116 Identities=18% Similarity=0.149 Sum_probs=82.9
Q ss_pred CcChHHHHHhhCCCCC--CC-CceeEEEcCCCCCCCCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPED--TE-VIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~-~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+++|+++.+.|++++. +. .++++...|..+++ +.||.|+|..+++|+.. ....+..++++|+|||.+++.+.
T Consensus 101 vTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 101 VTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred eeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 6899999999998543 22 37899999988876 44999999999999965 88999999999999999877654
Q ss_pred CCCcHHH-HHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 77 GGETLYE-LRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
+...... ....|.. .. ......+++...+.+...++||.+....
T Consensus 178 ~~~~~~~~~~~~~i~---~y----iFPgG~lPs~~~i~~~~~~~~~~v~~~~ 222 (283)
T COG2230 178 TGPDQEFRRFPDFID---KY----IFPGGELPSISEILELASEAGFVVLDVE 222 (283)
T ss_pred cCCCcccccchHHHH---Hh----CCCCCcCCCHHHHHHHHHhcCcEEehHh
Confidence 3322111 1111110 10 1112235678889988999999885544
No 69
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.55 E-value=1.4e-07 Score=74.44 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=55.6
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|.|+.|++.|+++.. +..+++++++|+++++. +++||+|+|+. + .+....++.++++|+|||++++..
T Consensus 72 iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~-~---~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 72 LESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA-L---ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred EeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-cCCccEEEehh-h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 7999999998876533 22469999999998754 47999999976 3 356778899999999999988763
No 70
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.52 E-value=3.7e-07 Score=73.68 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=53.3
Q ss_pred CceeEEEcCCCCCC--------CCCCccceeeecccccccCCh-----------hHHHHHHHhhhcCCcEEEEEecCCCc
Q psy16312 20 VIYEKKFVDEEHLP--------FAENSVDLLISNLALHWVNNL-----------PGCFQQVLKCLRQDGVFLASIFGGET 80 (245)
Q Consensus 20 ~~i~f~~~D~~~l~--------~~~~~FD~Vis~~~l~~~~d~-----------~~~l~~i~r~LkpGG~l~~~~~~~~~ 80 (245)
+++.++++|+++.+ +.+++||+|+|+.+.+|..++ ..+|++++++|||||.|++.++....
T Consensus 91 ~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 91 VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 46899999999853 567899999999988887543 46899999999999999998877666
Q ss_pred HHHH
Q psy16312 81 LYEL 84 (245)
Q Consensus 81 ~~~~ 84 (245)
+.++
T Consensus 171 ~~~~ 174 (209)
T PRK11188 171 FDEY 174 (209)
T ss_pred HHHH
Confidence 5554
No 71
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.49 E-value=1.1e-06 Score=71.08 Aligned_cols=109 Identities=14% Similarity=-0.006 Sum_probs=74.9
Q ss_pred CcChHHHHHhhCCCCC--------------CCCceeEEEcCCCCCCCC-CCccceeeecccccccCC--hhHHHHHHHhh
Q psy16312 2 CDNCESILSQAEPPED--------------TEVIYEKKFVDEEHLPFA-ENSVDLLISNLALHWVNN--LPGCFQQVLKC 64 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--------------~~~~i~f~~~D~~~l~~~-~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~ 64 (245)
+|+|+.+|+.|.+... ...++++.++|+.+++.. .+.||.|+-..++++++. ....++.+.++
T Consensus 62 vD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~l 141 (213)
T TIGR03840 62 VELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLAL 141 (213)
T ss_pred EeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHH
Confidence 7999999998633211 124689999999988743 367999999998888853 34689999999
Q ss_pred hcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 65 LRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 65 LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
|||||++++.++...... .+ .+ ....+.+++.++|. .+|.+..+..
T Consensus 142 LkpgG~~ll~~~~~~~~~-------------~~--gp--p~~~~~~eL~~~f~-~~~~i~~~~~ 187 (213)
T TIGR03840 142 LPPGARQLLITLDYDQSE-------------MA--GP--PFSVSPAEVEALYG-GHYEIELLES 187 (213)
T ss_pred cCCCCeEEEEEEEcCCCC-------------CC--Cc--CCCCCHHHHHHHhc-CCceEEEEee
Confidence 999998766654321100 00 11 12457888888885 4677765554
No 72
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.48 E-value=1.3e-07 Score=75.53 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=73.1
Q ss_pred CCcChHHHHHhhCCCCCC--CCceeEEEcCCCCCCCCCCccceeeecccccccCChh--HHHHHHHhhhcCCcEEEEEec
Q psy16312 1 MCDNCESILSQAEPPEDT--EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLP--GCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~--~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~--~~l~~i~r~LkpGG~l~~~~~ 76 (245)
++|..+.+++.|++.... ..-.++.+.-++++..+.++||+|++.+++.|+.|.+ ..|++++..|+|||.+++-..
T Consensus 83 lVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 83 LVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp EEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence 468899999999875543 2236688888888766568999999999999998655 889999999999999987532
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 77 GGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
.... . . ..+.....+ =..+...+.++|++||++++..+
T Consensus 163 ~~~~--~----~-----~~~D~~DsS--vTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 163 VSSS--G----F-----DEFDEEDSS--VTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp EESS--S----E-----EEEETTTTE--EEEEHHHHHHHHHHCT-EEEEEE
T ss_pred CCCC--C----C-----cccCCccCe--eecCHHHHHHHHHHcCCEEEEec
Confidence 1110 0 0 000011111 13467899999999999986554
No 73
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.42 E-value=1.1e-06 Score=68.87 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=76.4
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCC-CC-CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCC
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEH-LP-FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGE 79 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~-l~-~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~ 79 (245)
+|++++.+..|.++ .+.++++|+++ |+ |++++||.||.+.+||.+.+|+.+|+++.|+ |...+++.++
T Consensus 42 vEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPN-- 111 (193)
T PF07021_consen 42 VEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPN-- 111 (193)
T ss_pred EecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecC--
Confidence 56777777777554 36789999985 54 8899999999999999999999999999666 6677777632
Q ss_pred cHHHHHHHHHHH---HHHhcCC----CCC-cccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 80 TLYELRSAVHLA---EMERRGG----VAS-HISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~----~~~-~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
+..+..-+... .+..-.. +.. ....+.|..++++++++.|+.+....
T Consensus 112 -Fg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~ 166 (193)
T PF07021_consen 112 -FGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERV 166 (193)
T ss_pred -hHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEE
Confidence 22222112111 0110000 000 01125688999999999999885433
No 74
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.40 E-value=1.3e-06 Score=69.27 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=69.4
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCC
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGE 79 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~ 79 (245)
+|+|+.|++.|+++.. ...+++++++|+. .++. ++||+|++....+ .....++.++++|+|||++++......
T Consensus 61 vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~~ 135 (187)
T PRK08287 61 IERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILLE 135 (187)
T ss_pred EECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecHh
Confidence 7999999999987543 1246889999875 3343 6899999976654 456789999999999999988642211
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEEEe
Q psy16312 80 TLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDE 130 (245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~~~ 130 (245)
+..++.+++++.||..+.+....
T Consensus 136 ----------------------------~~~~~~~~l~~~g~~~~~~~~~~ 158 (187)
T PRK08287 136 ----------------------------NLHSALAHLEKCGVSELDCVQLQ 158 (187)
T ss_pred ----------------------------hHHHHHHHHHHCCCCcceEEEEE
Confidence 12455678889999876655433
No 75
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.40 E-value=3.6e-07 Score=66.93 Aligned_cols=71 Identities=13% Similarity=-0.006 Sum_probs=55.8
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCC-CCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEH-LPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~-l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+|+.|++.|+++.. ...+++++.+|+.. ++...++||.|++....+. ...++++++++|+|||+++++.
T Consensus 49 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 49 IERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 7999999999987543 22468899998875 3333468999999776543 4689999999999999999875
No 76
>KOG3045|consensus
Probab=98.39 E-value=1.3e-06 Score=71.04 Aligned_cols=82 Identities=24% Similarity=0.365 Sum_probs=66.4
Q ss_pred CceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCC
Q psy16312 20 VIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGV 99 (245)
Q Consensus 20 ~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (245)
.|-++..+||..+|+++++.|++|+..+|+-. |....+.+++|+|+|||.+++....
T Consensus 210 ~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt-n~~df~kEa~RiLk~gG~l~IAEv~---------------------- 266 (325)
T KOG3045|consen 210 VNERVIACDMRNVPLEDESVDVAVFCLSLMGT-NLADFIKEANRILKPGGLLYIAEVK---------------------- 266 (325)
T ss_pred CCCceeeccccCCcCccCcccEEEeeHhhhcc-cHHHHHHHHHHHhccCceEEEEehh----------------------
Confidence 45567899999999999999999988887755 8999999999999999999887411
Q ss_pred CCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 100 ASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
+.|.+...+.+.|...||.+.+...
T Consensus 267 ----SRf~dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 267 ----SRFSDVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred ----hhcccHHHHHHHHHHcCCeeeehhh
Confidence 1344556688889999999866553
No 77
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.39 E-value=8.8e-07 Score=70.20 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=56.5
Q ss_pred ceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCCC
Q psy16312 21 IYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVA 100 (245)
Q Consensus 21 ~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (245)
|-.+..+|+.++|+++++.|+||+..+|+-. |....+.|..|+|||||.|.+....
T Consensus 105 n~~Vtacdia~vPL~~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAEV~----------------------- 160 (219)
T PF05148_consen 105 NPRVTACDIANVPLEDESVDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAEVK----------------------- 160 (219)
T ss_dssp STTEEES-TTS-S--TT-EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEEEG-----------------------
T ss_pred CCCEEEecCccCcCCCCceeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEEec-----------------------
Confidence 3356789999999999999999999888876 9999999999999999999887411
Q ss_pred CcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 101 SHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
+++.+...+.+.++..||....-+
T Consensus 161 ---SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 161 ---SRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp ---GG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred ---ccCcCHHHHHHHHHHCCCeEEecc
Confidence 123356778888999999986644
No 78
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.33 E-value=4.9e-07 Score=76.07 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=58.7
Q ss_pred CcChHHHHHhhCCC-CC------------------------C--------CCceeEEEcCCCCCCCC-CCccceeeeccc
Q psy16312 2 CDNCESILSQAEPP-ED------------------------T--------EVIYEKKFVDEEHLPFA-ENSVDLLISNLA 47 (245)
Q Consensus 2 iD~S~~ml~~A~~~-~~------------------------~--------~~~i~f~~~D~~~l~~~-~~~FD~Vis~~~ 47 (245)
+|+|+.+|+.|++. ++ + ...|.|.++|+.+.+++ .+.||+|+|..+
T Consensus 153 tDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNv 232 (287)
T PRK10611 153 SDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNV 232 (287)
T ss_pred EECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhH
Confidence 68999999999874 11 0 13478999999875543 578999999999
Q ss_pred ccccCC--hhHHHHHHHhhhcCCcEEEEE
Q psy16312 48 LHWVNN--LPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 48 l~~~~d--~~~~l~~i~r~LkpGG~l~~~ 74 (245)
|.|++. ..++++++++.|+|||+|++.
T Consensus 233 liyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 233 MIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 999954 668999999999999998776
No 79
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.31 E-value=2.1e-06 Score=71.01 Aligned_cols=73 Identities=19% Similarity=0.082 Sum_probs=54.4
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccC--------------------------C
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN--------------------------N 53 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~--------------------------d 53 (245)
+|+|+.|++.|+++.. +..++.++++|+.+ ++++++||+|+|+--..... .
T Consensus 117 iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 195 (251)
T TIGR03534 117 VDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDF 195 (251)
T ss_pred EECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHH
Confidence 7999999999987543 22468999999976 45568999999964332211 1
Q ss_pred hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 54 LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 54 ~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
...++.++.++|+|||++++..
T Consensus 196 ~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 196 YRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred HHHHHHHHHHhcccCCEEEEEE
Confidence 2356889999999999998874
No 80
>PRK14967 putative methyltransferase; Provisional
Probab=98.30 E-value=2.4e-06 Score=69.65 Aligned_cols=73 Identities=15% Similarity=0.018 Sum_probs=53.6
Q ss_pred CcChHHHHHhhCCCCCC-CCceeEEEcCCCCCCCCCCccceeeecccccccCC---------------------hhHHHH
Q psy16312 2 CDNCESILSQAEPPEDT-EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN---------------------LPGCFQ 59 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d---------------------~~~~l~ 59 (245)
+|+|+.|++.|++++.. ..++.++++|+... +.+++||+|+++.-...... ...+++
T Consensus 65 vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 143 (223)
T PRK14967 65 VDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCD 143 (223)
T ss_pred EECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHH
Confidence 79999999999876532 24688889998763 44578999999853222111 345788
Q ss_pred HHHhhhcCCcEEEEEe
Q psy16312 60 QVLKCLRQDGVFLASI 75 (245)
Q Consensus 60 ~i~r~LkpGG~l~~~~ 75 (245)
++.++|||||++++..
T Consensus 144 ~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 144 AAPALLAPGGSLLLVQ 159 (223)
T ss_pred HHHHhcCCCcEEEEEE
Confidence 9999999999988764
No 81
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.29 E-value=7.4e-07 Score=71.73 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=54.6
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+++.|++.|++++.. ..+++++++|+.+.....++||+|++..++++++ .++.++|+|||++++..
T Consensus 103 iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 103 VEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 79999999999876432 1358999999987554557999999999887764 47889999999998865
No 82
>PRK14968 putative methyltransferase; Provisional
Probab=98.27 E-value=2.4e-06 Score=67.40 Aligned_cols=97 Identities=16% Similarity=0.074 Sum_probs=66.6
Q ss_pred CcChHHHHHhhCCCCC--CCCc--eeEEEcCCCCCCCCCCccceeeecccccccC---------------------ChhH
Q psy16312 2 CDNCESILSQAEPPED--TEVI--YEKKFVDEEHLPFAENSVDLLISNLALHWVN---------------------NLPG 56 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~--i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~---------------------d~~~ 56 (245)
+|+|+.|++.|+++.. ...+ +.++++|+.+. +.+++||+|+++..+.... ....
T Consensus 51 ~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (188)
T PRK14968 51 VDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDR 129 (188)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHH
Confidence 6999999999977542 1112 88899998663 3445899999876543311 1346
Q ss_pred HHHHHHhhhcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 57 CFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 57 ~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
+++++.++|||||.+++..... .....+.+++.++||.+....
T Consensus 130 ~i~~~~~~Lk~gG~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 130 FLDEVGRYLKPGGRILLLQSSL----------------------------TGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred HHHHHHHhcCCCeEEEEEEccc----------------------------CCHHHHHHHHHHCCCeeeeee
Confidence 7999999999999988764211 113456778888899875444
No 83
>KOG1975|consensus
Probab=98.26 E-value=5.2e-07 Score=75.47 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=61.3
Q ss_pred CCcChHHHHHhhCCCCCC--------CCceeEEEcCCCC------CCCCCCccceeeecccccccC----ChhHHHHHHH
Q psy16312 1 MCDNCESILSQAEPPEDT--------EVIYEKKFVDEEH------LPFAENSVDLLISNLALHWVN----NLPGCFQQVL 62 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~--------~~~i~f~~~D~~~------l~~~~~~FD~Vis~~~l~~~~----d~~~~l~~i~ 62 (245)
++|+++..|+.|++|+.. .-.+.|.++|... +++.+.+||+|-|.+++|+.- ....+|++++
T Consensus 145 giDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva 224 (389)
T KOG1975|consen 145 GIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVA 224 (389)
T ss_pred eeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHH
Confidence 489999999999998652 1236889999854 345555699999999999973 3446899999
Q ss_pred hhhcCCcEEEEEecC
Q psy16312 63 KCLRQDGVFLASIFG 77 (245)
Q Consensus 63 r~LkpGG~l~~~~~~ 77 (245)
+.|+|||+|+-+++.
T Consensus 225 ~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 225 KCLKPGGVFIGTIPD 239 (389)
T ss_pred hhcCCCcEEEEecCc
Confidence 999999999999843
No 84
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.26 E-value=8.9e-06 Score=66.06 Aligned_cols=109 Identities=16% Similarity=-0.022 Sum_probs=73.5
Q ss_pred CcChHHHHHhhCCCCC--------------CCCceeEEEcCCCCCCCC-CCccceeeecccccccC--ChhHHHHHHHhh
Q psy16312 2 CDNCESILSQAEPPED--------------TEVIYEKKFVDEEHLPFA-ENSVDLLISNLALHWVN--NLPGCFQQVLKC 64 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--------------~~~~i~f~~~D~~~l~~~-~~~FD~Vis~~~l~~~~--d~~~~l~~i~r~ 64 (245)
+|+|+.+|+.+.+... ...+|++.++|+.+++.. .+.||+|+-..++++++ .....++.+.++
T Consensus 65 vD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~l 144 (218)
T PRK13255 65 VELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAAL 144 (218)
T ss_pred EccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHH
Confidence 7999999997632110 125689999999988643 26899999999999996 345889999999
Q ss_pred hcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 65 LRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 65 LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
|+|||++++.+....+ .. .+ .+ ....+.+++.+++. -+|.+..+..
T Consensus 145 L~pgG~~~l~~~~~~~-~~------------~~--gP--p~~~~~~el~~~~~-~~~~i~~~~~ 190 (218)
T PRK13255 145 LPAGCRGLLVTLDYPQ-EE------------LA--GP--PFSVSDEEVEALYA-GCFEIELLER 190 (218)
T ss_pred cCCCCeEEEEEEEeCC-cc------------CC--CC--CCCCCHHHHHHHhc-CCceEEEeee
Confidence 9999975543321110 00 00 11 12467889998885 3477765553
No 85
>PHA03411 putative methyltransferase; Provisional
Probab=98.26 E-value=4.2e-06 Score=69.61 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=70.9
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCC--------------------hhHHHHHH
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN--------------------LPGCFQQV 61 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d--------------------~~~~l~~i 61 (245)
+|+|+.|++.|+++.+ +++++++|+.++.. +.+||+|+++-.+++.+. ....+...
T Consensus 94 VDisp~al~~Ar~n~~---~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v 169 (279)
T PHA03411 94 VELNPEFARIGKRLLP---EAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADV 169 (279)
T ss_pred EECCHHHHHHHHHhCc---CCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhh
Confidence 7999999999988754 78999999998764 378999999988887532 13456677
Q ss_pred HhhhcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCee
Q psy16312 62 LKCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNM 123 (245)
Q Consensus 62 ~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 123 (245)
..+|+|+|.+++...+. + ....-.++.++.++|+++||..
T Consensus 170 ~~~L~p~G~~~~~yss~-~---------------------~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 170 GYFIVPTGSAGFAYSGR-P---------------------YYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred HheecCCceEEEEEecc-c---------------------cccccCCHHHHHHHHHhcCcEe
Confidence 88888888766653111 1 1112236789999999999975
No 86
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.24 E-value=2.3e-06 Score=59.58 Aligned_cols=73 Identities=27% Similarity=0.320 Sum_probs=60.0
Q ss_pred CcChHHHHHhhCCC--CCCCCceeEEEcCCCCCCC-CCCccceeeecccccc-cCChhHHHHHHHhhhcCCcEEEEE
Q psy16312 2 CDNCESILSQAEPP--EDTEVIYEKKFVDEEHLPF-AENSVDLLISNLALHW-VNNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 2 iD~S~~ml~~A~~~--~~~~~~i~f~~~D~~~l~~-~~~~FD~Vis~~~l~~-~~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
+|+++.+++.+++. .....++.+...|..+... ..++||+|+++.++++ ..+....+..+.++|+|||.++++
T Consensus 27 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 27 VDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 68899998888721 1223578999999988764 4578999999999999 778889999999999999999876
No 87
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.24 E-value=1.2e-05 Score=64.16 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=66.3
Q ss_pred EEEcCCCCCCCC---CCccceeeecccccccCChh---HHHHHHHhhhcCCcE-----EEEEecCCCcHHHHHHHHHHHH
Q psy16312 24 KKFVDEEHLPFA---ENSVDLLISNLALHWVNNLP---GCFQQVLKCLRQDGV-----FLASIFGGETLYELRSAVHLAE 92 (245)
Q Consensus 24 f~~~D~~~l~~~---~~~FD~Vis~~~l~~~~d~~---~~l~~i~r~LkpGG~-----l~~~~~~~~~~~~~~~~~~~~~ 92 (245)
..+.|..+.|++ .++||+|+++.+|.++|++. .++..+++.|+|+|. |++.. |.++ .
T Consensus 87 I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl--P~~C------v---- 154 (219)
T PF11968_consen 87 ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL--PLPC------V---- 154 (219)
T ss_pred ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEe--CchH------h----
Confidence 466777776653 67999999999999999877 689999999999999 77776 3221 1
Q ss_pred HHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEEE
Q psy16312 93 MERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVD 129 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~~ 129 (245)
..+++.+.+.|..+++..||..+.....
T Consensus 155 ---------~NSRy~~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 155 ---------TNSRYMTEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred ---------hcccccCHHHHHHHHHhCCcEEEEEEec
Confidence 1234667889999999999998766543
No 88
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.23 E-value=1.3e-06 Score=70.68 Aligned_cols=68 Identities=10% Similarity=0.018 Sum_probs=54.3
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+++.|++.|+++.. +..+++++++|+.......+.||+|++..+++.+ ...+.+.|||||++++..
T Consensus 107 vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 107 IERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 7899999999988654 2357999999998766566899999998776544 346778999999988764
No 89
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.22 E-value=1.7e-06 Score=69.26 Aligned_cols=71 Identities=7% Similarity=0.019 Sum_probs=55.7
Q ss_pred CcChHHHHHhhCCCCC--C-CCceeEEEcCCCCC-CCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--T-EVIYEKKFVDEEHL-PFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~-~~~i~f~~~D~~~l-~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+|+.|++.|+++.. + ..++.++++|+.+. +..++.||+|++... ..++..+++.+.++|||||++++..
T Consensus 71 vD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 71 VDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred EECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEe
Confidence 7999999999987543 1 25789999999763 333468999998653 3467899999999999999998764
No 90
>PTZ00146 fibrillarin; Provisional
Probab=98.22 E-value=9.8e-06 Score=68.06 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=48.5
Q ss_pred CcChHH----HHHhhCCCCCCCCceeEEEcCCCCC---CCCCCccceeeecccccccCCh-hHHHHHHHhhhcCCcEEEE
Q psy16312 2 CDNCES----ILSQAEPPEDTEVIYEKKFVDEEHL---PFAENSVDLLISNLALHWVNNL-PGCFQQVLKCLRQDGVFLA 73 (245)
Q Consensus 2 iD~S~~----ml~~A~~~~~~~~~i~f~~~D~~~l---~~~~~~FD~Vis~~~l~~~~d~-~~~l~~i~r~LkpGG~l~~ 73 (245)
+|+|+. |++.|+.+ .||.+++.|+... ....++||+|++..+ .+|. ..++.+++++|||||.|++
T Consensus 163 VD~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 163 VEFSHRSGRDLTNMAKKR----PNIVPIIEDARYPQKYRMLVPMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EECcHHHHHHHHHHhhhc----CCCEEEECCccChhhhhcccCCCCEEEEeCC---CcchHHHHHHHHHHhccCCCEEEE
Confidence 688986 55666544 4789999998642 222358999999774 2343 3566799999999999998
Q ss_pred Ee
Q psy16312 74 SI 75 (245)
Q Consensus 74 ~~ 75 (245)
..
T Consensus 236 ~i 237 (293)
T PTZ00146 236 SI 237 (293)
T ss_pred EE
Confidence 64
No 91
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.21 E-value=1.3e-06 Score=76.25 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=61.3
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCC--CCCCCccceeeecccccccCCh------hHHHHHHHhhhcCCcEE
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHL--PFAENSVDLLISNLALHWVNNL------PGCFQQVLKCLRQDGVF 71 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l--~~~~~~FD~Vis~~~l~~~~d~------~~~l~~i~r~LkpGG~l 71 (245)
+|+++.|++.|.+++. +..|+.++++|+..+ .+++++||.|++++...|...+ ..++.+++|+|+|||.+
T Consensus 152 IEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l 231 (390)
T PRK14121 152 IEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTL 231 (390)
T ss_pred EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEE
Confidence 7899999999987653 235899999999764 4678999999998887776544 47899999999999999
Q ss_pred EEEe
Q psy16312 72 LASI 75 (245)
Q Consensus 72 ~~~~ 75 (245)
.+.+
T Consensus 232 ~l~T 235 (390)
T PRK14121 232 ELRT 235 (390)
T ss_pred EEEE
Confidence 8876
No 92
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.19 E-value=2.7e-06 Score=72.51 Aligned_cols=81 Identities=9% Similarity=0.010 Sum_probs=57.7
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCC-CCCCCC----ccceeeecccccccCC--hhHHHHHHHhhhcCCcEE
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEH-LPFAEN----SVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVF 71 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~-l~~~~~----~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l 71 (245)
+|+|++||+.|+++... ..++.++++|+.+ +++... ...++++..++++++. ...+|++++++|+|||.|
T Consensus 94 iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~ 173 (301)
T TIGR03438 94 IDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGL 173 (301)
T ss_pred EECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 79999999999886532 1357788999986 444322 2334555577888853 446899999999999999
Q ss_pred EEEecCCCcHH
Q psy16312 72 LASIFGGETLY 82 (245)
Q Consensus 72 ~~~~~~~~~~~ 82 (245)
++.........
T Consensus 174 lig~d~~~~~~ 184 (301)
T TIGR03438 174 LIGVDLVKDPA 184 (301)
T ss_pred EEeccCCCCHH
Confidence 98765444433
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.17 E-value=2.2e-06 Score=74.18 Aligned_cols=74 Identities=14% Similarity=0.060 Sum_probs=56.9
Q ss_pred CCcChHHHHHhhCCCCCC-CCceeEEEcCCCCCCCCCCccceeeecccccccC-----ChhHHHHHHHhhhcCCcEEEEE
Q psy16312 1 MCDNCESILSQAEPPEDT-EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN-----NLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~-----d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
.+|+|+.|++.|++++.. ....++...|+.+. . +++||+|+|+..+|+.. ....+++++.++|||||.+++.
T Consensus 225 ~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-~-~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 225 LSDVSAAALESSRATLAANGLEGEVFASNVFSD-I-KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred EEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-c-CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 379999999999876542 12356777777542 2 47899999999998742 3468899999999999999887
Q ss_pred ec
Q psy16312 75 IF 76 (245)
Q Consensus 75 ~~ 76 (245)
..
T Consensus 303 an 304 (342)
T PRK09489 303 AN 304 (342)
T ss_pred Ee
Confidence 53
No 94
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.16 E-value=3.9e-06 Score=72.47 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=57.8
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccc--------cCC-hhHHHHHHHhhhcCCcE
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHW--------VNN-LPGCFQQVLKCLRQDGV 70 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~--------~~d-~~~~l~~i~r~LkpGG~ 70 (245)
+|+++.|++.|++++. +..++.+.++|+.++|+.+++||+|+++--..- ..+ ...++++++++|||||+
T Consensus 210 ~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~ 289 (329)
T TIGR01177 210 CDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGW 289 (329)
T ss_pred EcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcE
Confidence 6999999999987653 223478999999999987789999999632111 111 46899999999999999
Q ss_pred EEEEe
Q psy16312 71 FLASI 75 (245)
Q Consensus 71 l~~~~ 75 (245)
+++..
T Consensus 290 lv~~~ 294 (329)
T TIGR01177 290 IVYAV 294 (329)
T ss_pred EEEEE
Confidence 98875
No 95
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.14 E-value=1.4e-06 Score=68.96 Aligned_cols=111 Identities=13% Similarity=0.219 Sum_probs=72.3
Q ss_pred CcChHHHHHhhCCCCC-CCCceeEEEcCCCCCCCCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 2 CDNCESILSQAEPPED-TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~-~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
+|.|+..++.+++.+. ...+|+..+.|+++..++ +.||+|+|..++++++. ....++++...++|||++++.++..
T Consensus 58 vD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 58 VDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp EESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred EECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 6899999988766432 234699999999988876 78999999999999953 3468999999999999987754322
Q ss_pred CcHHHHHHHHHHHHHHhcCCCCCcccC-CCCHHHHHHHHHhCCCeeeEEEEEeE
Q psy16312 79 ETLYELRSAVHLAEMERRGGVASHISP-FTQIRDVGSLLTRAGFNMLTIDVDEI 131 (245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~aGF~~~~~~~~~~ 131 (245)
.. . + + .+...+ ...+.++.+.+ .||+++...+...
T Consensus 137 ~~--d----~--------p--~~~~~~f~~~~~EL~~~y--~dW~il~y~E~~g 172 (192)
T PF03848_consen 137 TP--D----Y--------P--CPSPFPFLLKPGELREYY--ADWEILKYNEDVG 172 (192)
T ss_dssp -S--S----S------------SS--S--B-TTHHHHHT--TTSEEEEEEEEEE
T ss_pred cC--C----C--------C--CCCCCCcccCHHHHHHHh--CCCeEEEEEcccc
Confidence 11 0 0 0 011111 23456777776 4799877664433
No 96
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.11 E-value=3.5e-06 Score=68.31 Aligned_cols=68 Identities=10% Similarity=-0.011 Sum_probs=53.5
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+++.|++.|++++. +..+++++++|+.......+.||+|++.....++ ...+.+.|+|||++++..
T Consensus 108 vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 108 IERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred EeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 6899999999988654 2357999999998755445789999987765444 456889999999998864
No 97
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.10 E-value=4.4e-06 Score=70.78 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=53.3
Q ss_pred CCcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecC
Q psy16312 1 MCDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~ 77 (245)
.+|+|+.|++.|+++... ..++.+...+.. +..+++||+|+++...+.+ ..++.++.++|||||+++++.+.
T Consensus 187 avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~~~l---~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 187 GIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILAEVI---KELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCHHHH---HHHHHHHHHHcCCCcEEEEEeCc
Confidence 379999999999886531 123555555532 3335789999998775543 57899999999999999998643
No 98
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.04 E-value=2e-06 Score=73.94 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=56.7
Q ss_pred CcChHHHHHhhCCCCC--------C----CCceeEEEcCCCCCC----CC--CCccceeeecccccccCC----hhHHHH
Q psy16312 2 CDNCESILSQAEPPED--------T----EVIYEKKFVDEEHLP----FA--ENSVDLLISNLALHWVNN----LPGCFQ 59 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--------~----~~~i~f~~~D~~~l~----~~--~~~FD~Vis~~~l~~~~d----~~~~l~ 59 (245)
+|+|...|+.|++|+. . .-...|.++|..... +. ...||+|-|.++||+.-. ...+|.
T Consensus 91 ~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~ 170 (331)
T PF03291_consen 91 IDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLK 170 (331)
T ss_dssp EES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHH
Confidence 7999999999999871 1 124667888886432 23 359999999999999843 335899
Q ss_pred HHHhhhcCCcEEEEEecCC
Q psy16312 60 QVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 60 ~i~r~LkpGG~l~~~~~~~ 78 (245)
++...|+|||+|+.+++..
T Consensus 171 Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 171 NVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp HHHHTEEEEEEEEEEEE-H
T ss_pred HHHHhcCCCCEEEEEecCH
Confidence 9999999999999998543
No 99
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.02 E-value=1.5e-05 Score=66.21 Aligned_cols=91 Identities=19% Similarity=0.151 Sum_probs=60.5
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcH
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETL 81 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~ 81 (245)
+|+|+.|++.|++++.. .++. +...++..+.+||+|+|+...+. ...++.++.++|||||+++++.+...
T Consensus 148 iDis~~~l~~A~~n~~~-~~~~----~~~~~~~~~~~fD~Vvani~~~~---~~~l~~~~~~~LkpgG~lilsgi~~~-- 217 (250)
T PRK00517 148 VDIDPQAVEAARENAEL-NGVE----LNVYLPQGDLKADVIVANILANP---LLELAPDLARLLKPGGRLILSGILEE-- 217 (250)
T ss_pred EECCHHHHHHHHHHHHH-cCCC----ceEEEccCCCCcCEEEEcCcHHH---HHHHHHHHHHhcCCCcEEEEEECcHh--
Confidence 79999999999886542 1121 00111222237999999865443 35788999999999999999853211
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 82 YELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
....+.+.+.+.||.++....
T Consensus 218 --------------------------~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 218 --------------------------QADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred --------------------------hHHHHHHHHHHCCCEEEEEEE
Confidence 134567778889998765443
No 100
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.99 E-value=2.6e-05 Score=61.78 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=46.7
Q ss_pred CceeEEEcCCCCCC--------CCCCccceeeeccccc----ccCC-------hhHHHHHHHhhhcCCcEEEEEecCCCc
Q psy16312 20 VIYEKKFVDEEHLP--------FAENSVDLLISNLALH----WVNN-------LPGCFQQVLKCLRQDGVFLASIFGGET 80 (245)
Q Consensus 20 ~~i~f~~~D~~~l~--------~~~~~FD~Vis~~~l~----~~~d-------~~~~l~~i~r~LkpGG~l~~~~~~~~~ 80 (245)
+++.+.++|+.+.+ +++++||+|++..+.+ |..+ ...++.+++++|+|||++++..+....
T Consensus 72 ~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~ 151 (188)
T TIGR00438 72 ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEE 151 (188)
T ss_pred CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCcc
Confidence 46888999987653 3457899999965432 3222 367899999999999999987665554
Q ss_pred HHHH
Q psy16312 81 LYEL 84 (245)
Q Consensus 81 ~~~~ 84 (245)
+.++
T Consensus 152 ~~~~ 155 (188)
T TIGR00438 152 IDEY 155 (188)
T ss_pred HHHH
Confidence 4443
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.97 E-value=1e-05 Score=65.43 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=53.4
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|.++.|++.|++++. +..++++.++|+.+.....++||+|++..+++++ .+.+.+.|+|||++++...
T Consensus 106 vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 106 VERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 6899999999988653 2246899999986533234789999998877655 3567899999999998764
No 102
>PRK00811 spermidine synthase; Provisional
Probab=97.96 E-value=6.9e-06 Score=69.40 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=57.6
Q ss_pred CCcChHHHHHhhCCCCC-------CCCceeEEEcCCCCC-CCCCCccceeeecccccccCC----hhHHHHHHHhhhcCC
Q psy16312 1 MCDNCESILSQAEPPED-------TEVIYEKKFVDEEHL-PFAENSVDLLISNLALHWVNN----LPGCFQQVLKCLRQD 68 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~-------~~~~i~f~~~D~~~l-~~~~~~FD~Vis~~~l~~~~d----~~~~l~~i~r~LkpG 68 (245)
++|+++.|++.|++.++ ..++++++.+|+... ....++||+|++...-.+.+. ...+++.+++.|+||
T Consensus 105 ~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 105 LVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred EEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 47999999999998653 246899999998753 334578999999765544332 146789999999999
Q ss_pred cEEEEEe
Q psy16312 69 GVFLASI 75 (245)
Q Consensus 69 G~l~~~~ 75 (245)
|.+++..
T Consensus 185 Gvlv~~~ 191 (283)
T PRK00811 185 GIFVAQS 191 (283)
T ss_pred cEEEEeC
Confidence 9998764
No 103
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.96 E-value=6.6e-06 Score=71.96 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=57.0
Q ss_pred CCcChHHHHHhhCCCCCC-----CCceeEEEcCCCCCCCCCCccceeeecccccccC-----ChhHHHHHHHhhhcCCcE
Q psy16312 1 MCDNCESILSQAEPPEDT-----EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN-----NLPGCFQQVLKCLRQDGV 70 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~-----~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~-----d~~~~l~~i~r~LkpGG~ 70 (245)
++|.|+.|++.|++++.. ..+++|...|+.+. +.+++||+|+||-.+|+.. ...++++.++++|+|||.
T Consensus 257 ~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~ 335 (378)
T PRK15001 257 FVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGE 335 (378)
T ss_pred EEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCE
Confidence 479999999999976421 13688999888543 2346899999998877652 134789999999999999
Q ss_pred EEEEe
Q psy16312 71 FLASI 75 (245)
Q Consensus 71 l~~~~ 75 (245)
+++..
T Consensus 336 L~iV~ 340 (378)
T PRK15001 336 LYIVA 340 (378)
T ss_pred EEEEE
Confidence 98885
No 104
>PRK01581 speE spermidine synthase; Validated
Probab=97.94 E-value=4.7e-05 Score=65.84 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=54.4
Q ss_pred CCcChHHHHHhhCCC--C------C-CCCceeEEEcCCCC-CCCCCCccceeeeccccccc---C--ChhHHHHHHHhhh
Q psy16312 1 MCDNCESILSQAEPP--E------D-TEVIYEKKFVDEEH-LPFAENSVDLLISNLALHWV---N--NLPGCFQQVLKCL 65 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~--~------~-~~~~i~f~~~D~~~-l~~~~~~FD~Vis~~~l~~~---~--d~~~~l~~i~r~L 65 (245)
++|+++.|++.|++. . + ..++++++++|+.. +....++||+|++...-... . --..+++.+++.|
T Consensus 179 ~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~L 258 (374)
T PRK01581 179 LVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFL 258 (374)
T ss_pred EEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhc
Confidence 479999999999962 1 1 24789999999986 34445789999987421110 0 0135889999999
Q ss_pred cCCcEEEEEe
Q psy16312 66 RQDGVFLASI 75 (245)
Q Consensus 66 kpGG~l~~~~ 75 (245)
+|||.+++..
T Consensus 259 kPgGV~V~Qs 268 (374)
T PRK01581 259 TEDGAFVCQS 268 (374)
T ss_pred CCCcEEEEec
Confidence 9999988774
No 105
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.93 E-value=1.2e-05 Score=62.75 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=54.6
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCC-----hhHHHHHHHhhhcCCcEEEEE
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN-----LPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d-----~~~~l~~i~r~LkpGG~l~~~ 74 (245)
+|+|+.+++.|++++. ...++++...|..+.. ++++||+|+||--++.-.+ ....+.+..++|||||.+++.
T Consensus 61 vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 61 VDINPDALELAKRNAERNGLENVEVVQSDLFEAL-PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp EESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCHHHHHHHHHHHHhcCccccccccccccccc-cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 7999999999988643 2223889999986532 2689999999977666544 467899999999999998776
Q ss_pred e
Q psy16312 75 I 75 (245)
Q Consensus 75 ~ 75 (245)
.
T Consensus 140 ~ 140 (170)
T PF05175_consen 140 I 140 (170)
T ss_dssp E
T ss_pred e
Confidence 5
No 106
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.90 E-value=1.2e-05 Score=64.18 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=38.8
Q ss_pred CceeEEEcCCCCCCCCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 20 VIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 20 ~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
.+|.|...|+.+.+...+.||+|+|..+|.+++. ..++++.+++.|+|||+|++..
T Consensus 118 ~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 118 KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 4689999999884334589999999999999964 3589999999999999999863
No 107
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.87 E-value=2.5e-06 Score=61.97 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=56.6
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCC--CCCCccceeeecccccccC--------ChhHHHHHHHhhhcCC
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLP--FAENSVDLLISNLALHWVN--------NLPGCFQQVLKCLRQD 68 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~--~~~~~FD~Vis~~~l~~~~--------d~~~~l~~i~r~LkpG 68 (245)
+|+++..++.|+.++.. ..+++++++|+.+.. +.+++||+|+++--..... ....+++++.++||||
T Consensus 29 vdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g 108 (117)
T PF13659_consen 29 VDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG 108 (117)
T ss_dssp EESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred EEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 68999999999886642 256899999998765 6779999999987655321 1347799999999999
Q ss_pred cEEEEEe
Q psy16312 69 GVFLASI 75 (245)
Q Consensus 69 G~l~~~~ 75 (245)
|.+++.+
T Consensus 109 G~~~~~~ 115 (117)
T PF13659_consen 109 GVLVFIT 115 (117)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 9998875
No 108
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.86 E-value=6.5e-05 Score=63.00 Aligned_cols=73 Identities=21% Similarity=0.166 Sum_probs=53.0
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccc------c--------c------------cCC
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLAL------H--------W------------VNN 53 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l------~--------~------------~~d 53 (245)
+|+|+.|++.|+++.. ...++.++++|+... +.+++||+|+|+--. + + +..
T Consensus 138 iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~ 216 (275)
T PRK09328 138 VDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDF 216 (275)
T ss_pred EECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHH
Confidence 7999999999998653 235799999998543 235799999986321 1 0 011
Q ss_pred hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 54 LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 54 ~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
...++.++.++|+|||++++..
T Consensus 217 ~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 217 YRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHhcccCCEEEEEE
Confidence 3467888889999999999864
No 109
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.86 E-value=6.5e-05 Score=66.20 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=51.7
Q ss_pred CcChHHHHHhhCCCCCC-CCceeEEEcCCCCCCCC-CCccceeeecccccccCC--------------------------
Q psy16312 2 CDNCESILSQAEPPEDT-EVIYEKKFVDEEHLPFA-ENSVDLLISNLALHWVNN-------------------------- 53 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~~~-~~~FD~Vis~~~l~~~~d-------------------------- 53 (245)
+|+|+.|++.|+++... ..++.|+++|+.+..++ .++||+|+||-- +++.
T Consensus 281 VDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP--YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~ 358 (423)
T PRK14966 281 SDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP--YIENGDKHLLQGDLRFEPQIALTDFSDGLS 358 (423)
T ss_pred EECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC--CCCcchhhhcchhhhcCHHHHhhCCCchHH
Confidence 79999999999987542 24799999998654332 368999999652 2211
Q ss_pred -hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 54 -LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 54 -~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
....++.+.++|+|||++++..
T Consensus 359 ~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 359 CIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEE
Confidence 2255666778899999988764
No 110
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.86 E-value=2.4e-05 Score=62.44 Aligned_cols=71 Identities=14% Similarity=0.037 Sum_probs=52.4
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCC-CCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEH-LPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~-l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|+|+.|++.|++++. +..+++++++|+.+ ++.....+|.|+... ..+...++++++++|+|||++++...
T Consensus 70 vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 70 IERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 7999999999988653 22468999999865 332223467765432 23567899999999999999998864
No 111
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.85 E-value=3.4e-05 Score=65.20 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=52.9
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecc------c-------ccccC------------C
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNL------A-------LHWVN------------N 53 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~------~-------l~~~~------------d 53 (245)
+|+|+.|++.|++++.. ..++.|+++|+.+. +++++||+|+|+- . +++-+ .
T Consensus 151 vDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~ 229 (284)
T TIGR03533 151 VDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDL 229 (284)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHH
Confidence 79999999999986542 14689999998542 3446899999971 0 11111 1
Q ss_pred hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 54 LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 54 ~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
....+.++.++|+|||++++.+
T Consensus 230 ~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 230 VRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 2466889999999999999886
No 112
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=2e-05 Score=59.36 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=60.3
Q ss_pred eeEEEcCCCCCCCCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCC
Q psy16312 22 YEKKFVDEEHLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGV 99 (245)
Q Consensus 22 i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (245)
+..++--....+|.+++.|+|.+.+++.|+.- -..+++++++.|||||++-++++.-....+....-. ..++.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~v-----qvggp 105 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDV-----QVGGP 105 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhh-----hccCC
Confidence 33333333446789999999999999999853 447899999999999999998754433322221111 11111
Q ss_pred CCcccCC----CCHHHHHHHHHhCCCee
Q psy16312 100 ASHISPF----TQIRDVGSLLTRAGFNM 123 (245)
Q Consensus 100 ~~~~~~~----~~~~~~~~~l~~aGF~~ 123 (245)
.+.-.|. .+...+...+.++||.+
T Consensus 106 gpndhP~~r~v~t~r~m~n~~m~~~~~~ 133 (185)
T COG4627 106 GPNDHPLHRIVKTMRMMFNGFMDAGFVV 133 (185)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhhhhee
Confidence 1111121 24455667777788865
No 113
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.83 E-value=3.2e-05 Score=63.45 Aligned_cols=67 Identities=7% Similarity=0.139 Sum_probs=54.4
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+++|+.|....+++- |.+.|..++.-.+.+||+|.|..+|.-..+|...|+.|++.|+|+|++++..
T Consensus 122 TE~S~~Mr~rL~~kg-------~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 122 TEASPPMRWRLSKKG-------FTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ecCCHHHHHHHHhCC-------CeEEehhhhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 578999987776642 3444555555445789999999999999999999999999999999988765
No 114
>PRK03612 spermidine synthase; Provisional
Probab=97.82 E-value=3.9e-05 Score=70.23 Aligned_cols=75 Identities=13% Similarity=0.083 Sum_probs=56.6
Q ss_pred CCcChHHHHHhhCCC--CC-------CCCceeEEEcCCCCC-CCCCCccceeeecccccccCCh-----hHHHHHHHhhh
Q psy16312 1 MCDNCESILSQAEPP--ED-------TEVIYEKKFVDEEHL-PFAENSVDLLISNLALHWVNNL-----PGCFQQVLKCL 65 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~--~~-------~~~~i~f~~~D~~~l-~~~~~~FD~Vis~~~l~~~~d~-----~~~l~~i~r~L 65 (245)
.+|++++|++.|+++ ++ ..++++++++|+.+. ...+++||+|++...-.+.+.. ..+++.++++|
T Consensus 326 ~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L 405 (521)
T PRK03612 326 LVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRL 405 (521)
T ss_pred EEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhc
Confidence 379999999999983 21 236899999999763 3334789999998654443322 25789999999
Q ss_pred cCCcEEEEEe
Q psy16312 66 RQDGVFLASI 75 (245)
Q Consensus 66 kpGG~l~~~~ 75 (245)
||||.+++..
T Consensus 406 ~pgG~lv~~~ 415 (521)
T PRK03612 406 APDGLLVVQS 415 (521)
T ss_pred CCCeEEEEec
Confidence 9999998875
No 115
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.81 E-value=2.6e-05 Score=69.85 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=56.6
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCC----CCCCccceeeec------ccccccCC----------------
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLP----FAENSVDLLISN------LALHWVNN---------------- 53 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~----~~~~~FD~Vis~------~~l~~~~d---------------- 53 (245)
+|+++.|++.+++++. +..++.++++|+..++ +..++||.|++. .+++.-++
T Consensus 283 ~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~ 362 (434)
T PRK14901 283 VDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPL 362 (434)
T ss_pred EcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHH
Confidence 6999999999988654 2246899999998876 445789999963 23333332
Q ss_pred hhHHHHHHHhhhcCCcEEEEEec
Q psy16312 54 LPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 54 ~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
....|.++.++|||||+++.++.
T Consensus 363 Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 363 QAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeC
Confidence 35779999999999999987753
No 116
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.77 E-value=7.1e-05 Score=61.94 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=58.4
Q ss_pred EEEcCCCCCC-CCC-----CccceeeecccccccC-Chh---HHHHHHHhhhcCCcEEEEEecCCCcHHHHHHHHHHHHH
Q psy16312 24 KKFVDEEHLP-FAE-----NSVDLLISNLALHWVN-NLP---GCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEM 93 (245)
Q Consensus 24 f~~~D~~~l~-~~~-----~~FD~Vis~~~l~~~~-d~~---~~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~ 93 (245)
++.+|+...+ +.+ ..||+|++.++|.... |++ .+++++.++|||||.|++......+...
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~---------- 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM---------- 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE----------
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE----------
Confidence 6668887643 322 3599999999999873 544 7899999999999999887543322110
Q ss_pred HhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 94 ERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
.|. .....-..+.+.+++.|+++||.+....
T Consensus 208 --vG~-~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 208 --VGG-HKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp --ETT-EEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred --ECC-EecccccCCHHHHHHHHHHcCCEEEecc
Confidence 011 1111113578889999999999886655
No 117
>PRK04457 spermidine synthase; Provisional
Probab=97.75 E-value=3.3e-05 Score=64.52 Aligned_cols=77 Identities=13% Similarity=0.226 Sum_probs=57.2
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCC-CCCCCccceeeecccccc--cC---ChhHHHHHHHhhhcCCcEEE
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHL-PFAENSVDLLISNLALHW--VN---NLPGCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l-~~~~~~FD~Vis~~~l~~--~~---d~~~~l~~i~r~LkpGG~l~ 72 (245)
+|+++.+++.|++.+.. .++++++++|+.+. .-..++||+|++.. ++. .+ ....++++++++|+|||+++
T Consensus 96 VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 96 VEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred EECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 79999999999987542 36799999998653 32236899999753 111 11 12589999999999999999
Q ss_pred EEecCCC
Q psy16312 73 ASIFGGE 79 (245)
Q Consensus 73 ~~~~~~~ 79 (245)
+..+...
T Consensus 175 in~~~~~ 181 (262)
T PRK04457 175 VNLWSRD 181 (262)
T ss_pred EEcCCCc
Confidence 9876543
No 118
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.75 E-value=3.5e-05 Score=65.18 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=54.1
Q ss_pred CcChHHHHHhhCCCCC--CC-CceeEEEcCCCCCCCCCCccceeeecc-------------cccccC------------C
Q psy16312 2 CDNCESILSQAEPPED--TE-VIYEKKFVDEEHLPFAENSVDLLISNL-------------ALHWVN------------N 53 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~-~~i~f~~~D~~~l~~~~~~FD~Vis~~-------------~l~~~~------------d 53 (245)
+|+|+.+++.|++++. +. .++.|+++|+.+ ++...+||+|+|+- +++|-+ .
T Consensus 144 vDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~ 222 (284)
T TIGR00536 144 VDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNI 222 (284)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHH
Confidence 7999999999998643 11 349999999865 34435899999971 222222 2
Q ss_pred hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 54 LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 54 ~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
....+.++.++|+|||++++..
T Consensus 223 ~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 223 LRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred HHHHHHHHHHhccCCCEEEEEE
Confidence 4467889999999999999886
No 119
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.72 E-value=4.4e-05 Score=65.26 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=53.3
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecc------c-------ccccCC------------
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNL------A-------LHWVNN------------ 53 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~------~-------l~~~~d------------ 53 (245)
+|+|+.|++.|++++.. ..+++++++|+.+. +++++||+|+|+- . ++|-+.
T Consensus 163 vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~ 241 (307)
T PRK11805 163 VDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDL 241 (307)
T ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHH
Confidence 79999999999987542 24699999998542 2346899999972 0 111111
Q ss_pred hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 54 LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 54 ~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
....++++.++|+|||++++..
T Consensus 242 ~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 242 VRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 2467899999999999999875
No 120
>KOG1331|consensus
Probab=97.71 E-value=3.9e-05 Score=63.46 Aligned_cols=73 Identities=26% Similarity=0.423 Sum_probs=59.8
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCC---hhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN---LPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d---~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
.|++...+..|++.-. .....+|+..+|+.+.+||.+++..++||+.. ...+++++.|+|+|||..++.+|+-
T Consensus 71 ~D~c~~l~~~ak~~~~----~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 71 CDLCTGLLGGAKRSGG----DNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred cchhhhhccccccCCC----ceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 4677777777765533 15788999999999999999999999999964 4479999999999999987776653
No 121
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.70 E-value=4.4e-05 Score=68.65 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=56.0
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeec----cc--c------cccCC----------hhHH
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISN----LA--L------HWVNN----------LPGC 57 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~----~~--l------~~~~d----------~~~~ 57 (245)
+|+|+.|++.+++++. +..+++++++|+..++ ++++||+|++- .. + .|..+ ....
T Consensus 281 vD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~i 359 (445)
T PRK14904 281 VDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAEL 359 (445)
T ss_pred EECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHH
Confidence 7999999999988654 2246899999998876 34789999952 11 1 12222 2358
Q ss_pred HHHHHhhhcCCcEEEEEecCC
Q psy16312 58 FQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 58 l~~i~r~LkpGG~l~~~~~~~ 78 (245)
|.++.++|||||++++++..-
T Consensus 360 L~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 360 LDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred HHHHHHhcCCCcEEEEEeCCC
Confidence 999999999999999887543
No 122
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.69 E-value=0.00042 Score=56.43 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=73.4
Q ss_pred CcChHHHHHhhCCCC--------------CCCCceeEEEcCCCCCCCC---CCccceeeecccccccCC--hhHHHHHHH
Q psy16312 2 CDNCESILSQAEPPE--------------DTEVIYEKKFVDEEHLPFA---ENSVDLLISNLALHWVNN--LPGCFQQVL 62 (245)
Q Consensus 2 iD~S~~ml~~A~~~~--------------~~~~~i~f~~~D~~~l~~~---~~~FD~Vis~~~l~~~~d--~~~~l~~i~ 62 (245)
+|+|+..|+.+.+.. ....++++.++|+-+++.. .+.||+|+=..+|+.++. ..+..+.+.
T Consensus 71 vDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~ 150 (226)
T PRK13256 71 IELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMML 150 (226)
T ss_pred EecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHH
Confidence 799999999864411 1135799999999998642 268999999999999863 447899999
Q ss_pred hhhcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCCCCcccCC-CCHHHHHHHHHhCCCeeeEEE
Q psy16312 63 KCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPF-TQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 63 r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~aGF~~~~~~ 127 (245)
++|+|||.+++.++.... .....|| .+.+++.+++. .+|.+..+.
T Consensus 151 ~lL~pgg~llll~~~~~~-------------------~~~GPPf~v~~~e~~~lf~-~~~~i~~l~ 196 (226)
T PRK13256 151 EVCSNNTQILLLVMEHDK-------------------KSQTPPYSVTQAELIKNFS-AKIKFELID 196 (226)
T ss_pred HHhCCCcEEEEEEEecCC-------------------CCCCCCCcCCHHHHHHhcc-CCceEEEee
Confidence 999999987766532110 0112244 35678888775 456654444
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.69 E-value=5.7e-05 Score=67.59 Aligned_cols=75 Identities=11% Similarity=0.165 Sum_probs=55.1
Q ss_pred CcChHHHHHhhCCCCCC-CCceeEEEcCCCCCC--CCCCccceeeecc----c--------ccccCCh----------hH
Q psy16312 2 CDNCESILSQAEPPEDT-EVIYEKKFVDEEHLP--FAENSVDLLISNL----A--------LHWVNNL----------PG 56 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~--~~~~~FD~Vis~~----~--------l~~~~d~----------~~ 56 (245)
+|+|+.|++.+++++.. +.++.++++|+..++ +.+++||.|++.. . +.|...+ ..
T Consensus 274 ~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~ 353 (427)
T PRK10901 274 LDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSE 353 (427)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHH
Confidence 69999999999886542 234789999998764 3357899999422 1 2233222 36
Q ss_pred HHHHHHhhhcCCcEEEEEec
Q psy16312 57 CFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 57 ~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|..+.++|||||++++++.
T Consensus 354 iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 354 ILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred HHHHHHHhcCCCCEEEEEeC
Confidence 89999999999999998864
No 124
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.66 E-value=0.00021 Score=59.59 Aligned_cols=121 Identities=9% Similarity=0.006 Sum_probs=80.8
Q ss_pred CcChHHHHHhhCCCCC--CCCce-eEEEcCCCCC---CCCCCccceeeecccccccCChh---HHHHHHHhhhcCCcEEE
Q psy16312 2 CDNCESILSQAEPPED--TEVIY-EKKFVDEEHL---PFAENSVDLLISNLALHWVNNLP---GCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i-~f~~~D~~~l---~~~~~~FD~Vis~~~l~~~~d~~---~~l~~i~r~LkpGG~l~ 72 (245)
.|.|+.-++..++... +..++ +|.++|+-+. .--+-..++++.+..+..++|-. ..+..+++++.|||+++
T Consensus 167 rDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lI 246 (311)
T PF12147_consen 167 RDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLI 246 (311)
T ss_pred EeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence 5788888888777443 23455 9999998653 21134579999999999998844 67999999999999999
Q ss_pred EEecCCCcHHH-HHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 73 ASIFGGETLYE-LRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 73 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
.+.-..++--+ +...+ .......+.+....|..++.++++.+||+-+...
T Consensus 247 yTgQPwHPQle~IAr~L-----tsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 247 YTGQPWHPQLEMIARVL-----TSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred EcCCCCCcchHHHHHHH-----hcccCCCceEEEecCHHHHHHHHHHcCCchhhhe
Confidence 88622222112 22221 1111112334445789999999999999865433
No 125
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.57 E-value=8.5e-05 Score=66.46 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=56.4
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCC-CCCCccceeeec---ccccccC-------------------ChhH
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLP-FAENSVDLLISN---LALHWVN-------------------NLPG 56 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~-~~~~~FD~Vis~---~~l~~~~-------------------d~~~ 56 (245)
+|+|+.|++.+++++. +..++.+.++|+..++ +.+++||.|++. .++..+. ....
T Consensus 268 ~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~ 347 (431)
T PRK14903 268 VDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLR 347 (431)
T ss_pred EECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHH
Confidence 7999999999988654 2246899999998876 445789999852 2222221 1245
Q ss_pred HHHHHHhhhcCCcEEEEEecC
Q psy16312 57 CFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 57 ~l~~i~r~LkpGG~l~~~~~~ 77 (245)
.|.++.++|||||.++.++..
T Consensus 348 iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 348 IVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred HHHHHHHhcCCCCEEEEEECC
Confidence 689999999999999988754
No 126
>KOG1269|consensus
Probab=97.57 E-value=6.9e-05 Score=65.15 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=50.9
Q ss_pred ceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 21 IYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 21 ~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
...++++|+...|+++++||.|.+.-+.+|.+++..++++++|+++|||+++.-.
T Consensus 161 k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 161 KCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred hcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHH
Confidence 4556899999999999999999999999999999999999999999999998754
No 127
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.56 E-value=4.5e-05 Score=65.43 Aligned_cols=68 Identities=12% Similarity=-0.027 Sum_probs=52.1
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+++.|++.|+++.. +..++.++++|+...+...++||+|++..++..+ ...+.++|+|||++++..
T Consensus 111 VDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 111 VEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 6899999999987543 2357899999987765555789999998766543 335778999999988754
No 128
>KOG1271|consensus
Probab=97.53 E-value=0.00049 Score=53.50 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=55.1
Q ss_pred CcChHHHHHhhCCCCC--CCCc-eeEEEcCCCCCCCCCCccceeeeccccccc---CC-----hhHHHHHHHhhhcCCcE
Q psy16312 2 CDNCESILSQAEPPED--TEVI-YEKKFVDEEHLPFAENSVDLLISNLALHWV---NN-----LPGCFQQVLKCLRQDGV 70 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~-i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~---~d-----~~~~l~~i~r~LkpGG~ 70 (245)
+|-|+..++.|+..+. +.+| |+|.+.|+..-.+..+.||+|.=-.++.-+ +| +..-+..+.+.|+|||.
T Consensus 97 vDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gi 176 (227)
T KOG1271|consen 97 VDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGI 176 (227)
T ss_pred cccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcE
Confidence 7899999999877543 2234 999999999877777899999854443333 22 23457889999999999
Q ss_pred EEEEe
Q psy16312 71 FLASI 75 (245)
Q Consensus 71 l~~~~ 75 (245)
|+++.
T Consensus 177 fvItS 181 (227)
T KOG1271|consen 177 FVITS 181 (227)
T ss_pred EEEEe
Confidence 98874
No 129
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.53 E-value=7.1e-05 Score=62.86 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCcChHHHHHhhCCCCCC------CCceeEEEcCCCC-CCCCCCccceeeecccccccCC----hhHHHHHHHhhhcCCc
Q psy16312 1 MCDNCESILSQAEPPEDT------EVIYEKKFVDEEH-LPFAENSVDLLISNLALHWVNN----LPGCFQQVLKCLRQDG 69 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~------~~~i~f~~~D~~~-l~~~~~~FD~Vis~~~l~~~~d----~~~~l~~i~r~LkpGG 69 (245)
++|+++.+++.|++.++. .++++++.+|+.. +....++||+|++.....+.+. ...+++.+++.|+|||
T Consensus 101 ~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG 180 (270)
T TIGR00417 101 LVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDG 180 (270)
T ss_pred EEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCc
Confidence 378999999999886531 3568888888754 2222478999998765333322 3477899999999999
Q ss_pred EEEEEe
Q psy16312 70 VFLASI 75 (245)
Q Consensus 70 ~l~~~~ 75 (245)
.+++..
T Consensus 181 ~lv~~~ 186 (270)
T TIGR00417 181 IFVAQS 186 (270)
T ss_pred EEEEcC
Confidence 998873
No 130
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.52 E-value=0.00085 Score=55.94 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=63.3
Q ss_pred CceeEEEcCCCCCCCCC---CccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcHHHHHHHHHHHHHHhc
Q psy16312 20 VIYEKKFVDEEHLPFAE---NSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEMERR 96 (245)
Q Consensus 20 ~~i~f~~~D~~~l~~~~---~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (245)
.++....+|..+....+ ++||+|+..+=+.-.+|.-.-|..|+++|||||..+ -+||-- +. +
T Consensus 144 ~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI--N~GPLl-------yh------~ 208 (270)
T PF07942_consen 144 SNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI--NFGPLL-------YH------F 208 (270)
T ss_pred CceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE--ecCCcc-------cc------C
Confidence 46788888988875544 799999988766666777889999999999999433 223310 00 0
Q ss_pred CCC--CCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 97 GGV--ASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 97 ~~~--~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
... ....+--.+.+++..+++..||+++.-+.
T Consensus 209 ~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 00011124789999999999999865443
No 131
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.51 E-value=9.6e-05 Score=61.84 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=54.9
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecc---cc---c--------ccC--------ChhHH
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNL---AL---H--------WVN--------NLPGC 57 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~---~l---~--------~~~--------d~~~~ 57 (245)
+|+++.|++.+++++. +..++.+.+.|+..++...+.||.|++.- .. . |.+ .....
T Consensus 102 ~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~i 181 (264)
T TIGR00446 102 NEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKEL 181 (264)
T ss_pred EcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHH
Confidence 7999999999988654 22468999999987765556799998521 11 1 110 12358
Q ss_pred HHHHHhhhcCCcEEEEEecC
Q psy16312 58 FQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 58 l~~i~r~LkpGG~l~~~~~~ 77 (245)
|.++.+.|||||+++.++..
T Consensus 182 L~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 182 IDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HHHHHHhcCCCCEEEEEeCC
Confidence 99999999999999888643
No 132
>PLN02366 spermidine synthase
Probab=97.50 E-value=0.0001 Score=62.97 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=55.3
Q ss_pred CCcChHHHHHhhCCCCC------CCCceeEEEcCCCCC-C-CCCCccceeeecccccccCC----hhHHHHHHHhhhcCC
Q psy16312 1 MCDNCESILSQAEPPED------TEVIYEKKFVDEEHL-P-FAENSVDLLISNLALHWVNN----LPGCFQQVLKCLRQD 68 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~------~~~~i~f~~~D~~~l-~-~~~~~FD~Vis~~~l~~~~d----~~~~l~~i~r~LkpG 68 (245)
++|+++.+++.|++.++ ..++++++++|+... . .+.++||+|++-..-.+.+. -..+++.++++|+||
T Consensus 120 ~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 120 ICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPG 199 (308)
T ss_pred EEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 36899999999998654 246899999997542 1 22468999998654443321 135799999999999
Q ss_pred cEEEEEe
Q psy16312 69 GVFLASI 75 (245)
Q Consensus 69 G~l~~~~ 75 (245)
|.++...
T Consensus 200 Gvlv~q~ 206 (308)
T PLN02366 200 GVVCTQA 206 (308)
T ss_pred cEEEECc
Confidence 9997653
No 133
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.48 E-value=0.00038 Score=56.48 Aligned_cols=108 Identities=19% Similarity=0.110 Sum_probs=69.5
Q ss_pred CcChHHHHHhhCC--CC-------C-----CCCceeEEEcCCCCCCCCC-CccceeeecccccccC--ChhHHHHHHHhh
Q psy16312 2 CDNCESILSQAEP--PE-------D-----TEVIYEKKFVDEEHLPFAE-NSVDLLISNLALHWVN--NLPGCFQQVLKC 64 (245)
Q Consensus 2 iD~S~~ml~~A~~--~~-------~-----~~~~i~f~~~D~~~l~~~~-~~FD~Vis~~~l~~~~--d~~~~l~~i~r~ 64 (245)
+|+|+..|+.|.+ .. . ...+|++.++|+-+++... ++||+|+=..+|+-++ ...+-.+.++++
T Consensus 65 vDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~l 144 (218)
T PF05724_consen 65 VDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASL 144 (218)
T ss_dssp EES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHC
T ss_pred EecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHH
Confidence 7999999998722 11 0 1246899999999887543 5899999777777774 355789999999
Q ss_pred hcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCCCCcccCC-CCHHHHHHHHHhCCCeeeEEEE
Q psy16312 65 LRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPF-TQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 65 LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
|+|||.+++.+..... ......|| .+.+++.+++. .+|++..++.
T Consensus 145 l~p~g~~lLi~l~~~~------------------~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 145 LKPGGRGLLITLEYPQ------------------GEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp EEEEEEEEEEEEES-C------------------SCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred hCCCCcEEEEEEEcCC------------------cCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 9999995443321100 00112233 46778888887 7899876665
No 134
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.47 E-value=0.00022 Score=59.50 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=45.4
Q ss_pred ceeEEEcCCCCCCCCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEE
Q psy16312 21 IYEKKFVDEEHLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 21 ~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~ 74 (245)
.|.|...|+.+-++..+.||+|+|..+|-++.. ..+++..++..|+|||+|++-
T Consensus 185 ~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 185 MVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred ccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 478888888776633488999999999999964 458999999999999999875
No 135
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.45 E-value=0.00025 Score=63.51 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=53.2
Q ss_pred CcChHHHHHhhCCCCCC-CC--ceeEEEcCCCCCCC--CCCccceeeec------ccccccCC----------------h
Q psy16312 2 CDNCESILSQAEPPEDT-EV--IYEKKFVDEEHLPF--AENSVDLLISN------LALHWVNN----------------L 54 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~--~i~f~~~D~~~l~~--~~~~FD~Vis~------~~l~~~~d----------------~ 54 (245)
+|+|+.|++.+++++.. +. .+.+.++|....+. .+++||.|++. .+++..++ .
T Consensus 268 ~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ 347 (426)
T TIGR00563 268 LDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQ 347 (426)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHH
Confidence 69999999999876541 11 23446677765543 45789999852 23433333 3
Q ss_pred hHHHHHHHhhhcCCcEEEEEecC
Q psy16312 55 PGCFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 55 ~~~l~~i~r~LkpGG~l~~~~~~ 77 (245)
...|.+++++|||||+++.++..
T Consensus 348 ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCC
Confidence 57899999999999999988654
No 136
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.44 E-value=0.00041 Score=57.60 Aligned_cols=73 Identities=16% Similarity=0.055 Sum_probs=51.4
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCC-CC-CCCccceeeecccc------cccC----------------C----
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHL-PF-AENSVDLLISNLAL------HWVN----------------N---- 53 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l-~~-~~~~FD~Vis~~~l------~~~~----------------d---- 53 (245)
+|+|+.|++.|++++.. .+++++++|+.+. +- ..++||+|+++--. +.++ |
T Consensus 116 vDis~~al~~A~~N~~~-~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~ 194 (251)
T TIGR03704 116 ADIDPAAVRCARRNLAD-AGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDV 194 (251)
T ss_pred EECCHHHHHHHHHHHHH-cCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHH
Confidence 79999999999987643 2357899998653 21 13679999987421 1110 1
Q ss_pred hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 54 LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 54 ~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
...++..+.++|+|||++++..
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 2367778889999999999885
No 137
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.40 E-value=0.00041 Score=63.35 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=51.7
Q ss_pred CCcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeeccc--------------ccccC-----------
Q psy16312 1 MCDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLA--------------LHWVN----------- 52 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~--------------l~~~~----------- 52 (245)
.+|+|+.|++.|++++.. ..++.++++|+.+ ++..++||+|+||-- +.|-+
T Consensus 167 avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl 245 (506)
T PRK01544 167 ATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGL 245 (506)
T ss_pred EEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHH
Confidence 379999999999986431 2468899999754 233468999999531 11110
Q ss_pred -ChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 53 -NLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 53 -d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
.....++++.++|+|||++++..
T Consensus 246 ~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 246 QAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEE
Confidence 12345778889999999998874
No 138
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.35 E-value=6.6e-05 Score=66.82 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=40.7
Q ss_pred CCCCCCCCCccceeeecc-cccccCChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 29 EEHLPFAENSVDLLISNL-ALHWVNNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 29 ~~~l~~~~~~FD~Vis~~-~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
-..|||++++||+|.|+. ...|.++-.-.|-++.|+|+|||+|+++..
T Consensus 172 s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 172 SQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 356999999999999855 456777777889999999999999999864
No 139
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.34 E-value=0.00028 Score=58.07 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=49.6
Q ss_pred HHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChh--HHHHHHHhhhcCC--cEEEEEe
Q psy16312 6 ESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLP--GCFQQVLKCLRQD--GVFLASI 75 (245)
Q Consensus 6 ~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~--~~l~~i~r~LkpG--G~l~~~~ 75 (245)
|..++.+++ ..+|+++.+|+. -+++ . +|+|+...+||..+|.. ..|+++++.|+|| |++++..
T Consensus 133 p~v~~~~~~----~~rv~~~~gd~f-~~~P-~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 133 PEVIEQAKE----ADRVEFVPGDFF-DPLP-V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp HHHHCCHHH----TTTEEEEES-TT-TCCS-S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred Hhhhhcccc----ccccccccccHH-hhhc-c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 556666665 268999999998 5565 3 99999999999997655 7899999999999 9987653
No 140
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.29 E-value=0.00068 Score=54.72 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=57.3
Q ss_pred CceeEEEcCCCCC--CCCCCccceeee---cccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcHHHHHHHHHHHHHH
Q psy16312 20 VIYEKKFVDEEHL--PFAENSVDLLIS---NLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEME 94 (245)
Q Consensus 20 ~~i~f~~~D~~~l--~~~~~~FD~Vis---~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (245)
.+|..+.+|+.+. .|.|.+||+|+- .+++.-----..+.++++|+|||||+++-=+..+....
T Consensus 185 ~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry------------ 252 (287)
T COG2521 185 IAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY------------ 252 (287)
T ss_pred cccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc------------
Confidence 3578899999774 478899999973 12211111234789999999999999875443332210
Q ss_pred hcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEEE
Q psy16312 95 RRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVD 129 (245)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~~ 129 (245)
....-+..+.+.|+++||+++....+
T Consensus 253 ---------rG~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 253 ---------RGLDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred ---------ccCChhHHHHHHHHhcCceeeeeehh
Confidence 01112456778899999997665443
No 141
>KOG2899|consensus
Probab=97.25 E-value=0.002 Score=52.39 Aligned_cols=40 Identities=15% Similarity=0.459 Sum_probs=34.5
Q ss_pred CCCccceeeecccccccC------ChhHHHHHHHhhhcCCcEEEEE
Q psy16312 35 AENSVDLLISNLALHWVN------NLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 35 ~~~~FD~Vis~~~l~~~~------d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
....||+|.|...-.|+. -...+++++.++|.|||+|++.
T Consensus 163 ~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 163 IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 346899999999888883 2558999999999999999998
No 142
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.23 E-value=0.00042 Score=62.34 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=53.3
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCC--CCCCccceeeeccc---cc---------ccCC----------hh
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLP--FAENSVDLLISNLA---LH---------WVNN----------LP 55 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~--~~~~~FD~Vis~~~---l~---------~~~d----------~~ 55 (245)
+|+++.|++.+++++. +..++.++++|+..++ +. ++||+|++..- .. |..+ ..
T Consensus 281 vDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 359 (444)
T PRK14902 281 LDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQL 359 (444)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHH
Confidence 7999999999987653 2246899999998764 33 78999997421 11 1111 13
Q ss_pred HHHHHHHhhhcCCcEEEEEe
Q psy16312 56 GCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 56 ~~l~~i~r~LkpGG~l~~~~ 75 (245)
..|.++.++|||||+++.++
T Consensus 360 ~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 360 EILESVAQYLKKGGILVYST 379 (444)
T ss_pred HHHHHHHHHcCCCCEEEEEc
Confidence 57999999999999998775
No 143
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.00086 Score=56.59 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=62.3
Q ss_pred CcChHHHHHhhCCCCCCCCcee----EEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecC
Q psy16312 2 CDNCESILSQAEPPEDTEVIYE----KKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~----f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~ 77 (245)
+|+.|-.++.|+.++.. +++. ....+....+. .+.||+|+||-...= ...+...++++|||||+++++-.-
T Consensus 191 ~DiDp~AV~aa~eNa~~-N~v~~~~~~~~~~~~~~~~-~~~~DvIVANILA~v---l~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 191 VDIDPQAVEAARENARL-NGVELLVQAKGFLLLEVPE-NGPFDVIVANILAEV---LVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred ecCCHHHHHHHHHHHHH-cCCchhhhcccccchhhcc-cCcccEEEehhhHHH---HHHHHHHHHHHcCCCceEEEEeeh
Confidence 68999999999886542 1222 33333333332 369999999874321 347888999999999999999421
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEEE
Q psy16312 78 GETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
.. -.+.+.+.+.++||+++.+..
T Consensus 266 ~~----------------------------q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 266 ED----------------------------QAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred Hh----------------------------HHHHHHHHHHhCCCeEeEEEe
Confidence 10 023456677788999876554
No 144
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.17 E-value=0.0018 Score=48.05 Aligned_cols=77 Identities=25% Similarity=0.356 Sum_probs=57.5
Q ss_pred CcChHHHHHhhCCCCCCCCc--eeEEEcCCCC--CCCCC-CccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPEDTEVI--YEKKFVDEEH--LPFAE-NSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~--i~f~~~D~~~--l~~~~-~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|+++.|+..++........ +.+..+|... +++.. ..||++.+...++|.. +...+.++.++|+|+|.+++...
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 78 VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 58899999886554421111 6888888886 78876 4899995555555554 88999999999999999988875
Q ss_pred CCC
Q psy16312 77 GGE 79 (245)
Q Consensus 77 ~~~ 79 (245)
...
T Consensus 157 ~~~ 159 (257)
T COG0500 157 LRD 159 (257)
T ss_pred cCC
Confidence 543
No 145
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.17 E-value=0.00024 Score=67.42 Aligned_cols=74 Identities=16% Similarity=0.052 Sum_probs=54.4
Q ss_pred CcChHHHHHhhCCCCC--CC--CceeEEEcCCCCC-CCCCCccceeeecc-----------cccccCChhHHHHHHHhhh
Q psy16312 2 CDNCESILSQAEPPED--TE--VIYEKKFVDEEHL-PFAENSVDLLISNL-----------ALHWVNNLPGCFQQVLKCL 65 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~--~~i~f~~~D~~~l-~~~~~~FD~Vis~~-----------~l~~~~d~~~~l~~i~r~L 65 (245)
+|+|+.+++.|++++. +. .+++|+++|+.+. .-..++||+|++.- .+....+....+..+.++|
T Consensus 567 vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL 646 (702)
T PRK11783 567 VDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLL 646 (702)
T ss_pred EeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHc
Confidence 7999999999999764 21 3689999998653 11146899999842 1222334567888899999
Q ss_pred cCCcEEEEEe
Q psy16312 66 RQDGVFLASI 75 (245)
Q Consensus 66 kpGG~l~~~~ 75 (245)
+|||.+++++
T Consensus 647 ~~gG~l~~~~ 656 (702)
T PRK11783 647 RPGGTLYFSN 656 (702)
T ss_pred CCCCEEEEEe
Confidence 9999998874
No 146
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.04 E-value=0.0011 Score=51.62 Aligned_cols=70 Identities=9% Similarity=0.015 Sum_probs=52.8
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhh--hcCCcEEEEE
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKC--LRQDGVFLAS 74 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~--LkpGG~l~~~ 74 (245)
+|+++.|++.+++++....+++++++|+..+++++..||.|+++.-.+.. ...+..+... +.++|.+++.
T Consensus 41 vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 41 IEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred EECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 79999999999988765468999999999998876679999998765532 3444444433 3477777776
No 147
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.02 E-value=0.00055 Score=56.22 Aligned_cols=74 Identities=18% Similarity=0.077 Sum_probs=56.3
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCC--CCCCccceeeeccccccc------------------CChhHHH
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLP--FAENSVDLLISNLALHWV------------------NNLPGCF 58 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~--~~~~~FD~Vis~~~l~~~------------------~d~~~~l 58 (245)
||+.+.|.+.|++.... ..+|++.++|+.++. ....+||+|+||=-..-. -+.+..+
T Consensus 74 VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i 153 (248)
T COG4123 74 VEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLI 153 (248)
T ss_pred EEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHH
Confidence 68899999999986442 367999999998865 334579999997432211 1356788
Q ss_pred HHHHhhhcCCcEEEEEe
Q psy16312 59 QQVLKCLRQDGVFLASI 75 (245)
Q Consensus 59 ~~i~r~LkpGG~l~~~~ 75 (245)
+....+|||||.+.+..
T Consensus 154 ~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 154 RAAAKLLKPGGRLAFVH 170 (248)
T ss_pred HHHHHHccCCCEEEEEe
Confidence 99999999999998874
No 148
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0013 Score=53.94 Aligned_cols=67 Identities=15% Similarity=0.039 Sum_probs=53.7
Q ss_pred cChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 3 DNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 3 D~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
|+-+++++.|++++.. ..++++..+|+.+.-+. ..||+|+. -++||..++.+++.+|||||.+++=+
T Consensus 126 E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 126 EIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred EecHHHHHHHHHHHHHhccccceEEEeccccccccc-cccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEc
Confidence 4557788888886542 24489999999887776 49999986 46799999999999999999987654
No 149
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.00 E-value=0.0045 Score=49.39 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=53.5
Q ss_pred CCccceeeecccccccC--ChhHHHHHHHhhhcCCcEEEEEe-c---C---CCcHHHHHHHHHHHHHHhcCCCCCcccCC
Q psy16312 36 ENSVDLLISNLALHWVN--NLPGCFQQVLKCLRQDGVFLASI-F---G---GETLYELRSAVHLAEMERRGGVASHISPF 106 (245)
Q Consensus 36 ~~~FD~Vis~~~l~~~~--d~~~~l~~i~r~LkpGG~l~~~~-~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (245)
.++||+|+|..++|-++ .-..+++.+.++|+|||.|++=- | | +.+-......+.. .....-.
T Consensus 100 ~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~---------rdp~~Gi 170 (204)
T PF06080_consen 100 PESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRS---------RDPEWGI 170 (204)
T ss_pred CCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhc---------CCCCcCc
Confidence 46899999999999885 34578999999999999987531 1 1 1111222222211 1112235
Q ss_pred CCHHHHHHHHHhCCCeee
Q psy16312 107 TQIRDVGSLLTRAGFNML 124 (245)
Q Consensus 107 ~~~~~~~~~l~~aGF~~~ 124 (245)
.+.+++.++..++|+..+
T Consensus 171 RD~e~v~~lA~~~GL~l~ 188 (204)
T PF06080_consen 171 RDIEDVEALAAAHGLELE 188 (204)
T ss_pred cCHHHHHHHHHHCCCccC
Confidence 688899999999999863
No 150
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.99 E-value=0.00033 Score=49.90 Aligned_cols=37 Identities=19% Similarity=0.540 Sum_probs=31.4
Q ss_pred ccceeeecccccccC------ChhHHHHHHHhhhcCCcEEEEE
Q psy16312 38 SVDLLISNLALHWVN------NLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 38 ~FD~Vis~~~l~~~~------d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
.||+|+|.++..|+. -...+++.+++.|+|||.|++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 499999999999983 2457899999999999999998
No 151
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00084 Score=53.62 Aligned_cols=69 Identities=17% Similarity=0.075 Sum_probs=52.0
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|..+...+.|++++. +..||.++++|...---+.+.||.|+...+...+|. .+.+.|||||++++-..
T Consensus 100 iEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 100 IERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEEc
Confidence 4667788888988654 345799999999754333489999999887765543 37789999999988753
No 152
>PLN02823 spermine synthase
Probab=96.91 E-value=0.001 Score=57.47 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=54.0
Q ss_pred CCcChHHHHHhhCCCCC------CCCceeEEEcCCCC-CCCCCCccceeeecccccccCC------hhHHHH-HHHhhhc
Q psy16312 1 MCDNCESILSQAEPPED------TEVIYEKKFVDEEH-LPFAENSVDLLISNLALHWVNN------LPGCFQ-QVLKCLR 66 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~------~~~~i~f~~~D~~~-l~~~~~~FD~Vis~~~l~~~~d------~~~~l~-~i~r~Lk 66 (245)
++|+++.+++.|++.++ ..++++++++|+.. +....++||+|++-..=.+... -..+++ .+++.|+
T Consensus 132 ~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~ 211 (336)
T PLN02823 132 MCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLN 211 (336)
T ss_pred EEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcC
Confidence 37999999999998664 24789999999976 3334578999997532111101 124677 8999999
Q ss_pred CCcEEEEEe
Q psy16312 67 QDGVFLASI 75 (245)
Q Consensus 67 pGG~l~~~~ 75 (245)
|||.+++..
T Consensus 212 p~Gvlv~q~ 220 (336)
T PLN02823 212 PGGIFVTQA 220 (336)
T ss_pred CCcEEEEec
Confidence 999988764
No 153
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.90 E-value=0.00018 Score=58.00 Aligned_cols=68 Identities=18% Similarity=0.080 Sum_probs=49.9
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|..+.+++.|++++. ...|+.++++|........+.||.|++..+..-+ -..+.+.|++||++++-.
T Consensus 103 vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~i------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 103 VERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEI------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp EESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred ECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeeccchH------HHHHHHhcCCCcEEEEEE
Confidence 5778899999988765 3458999999987543345789999998876433 244788899999998865
No 154
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.86 E-value=0.0062 Score=52.73 Aligned_cols=103 Identities=23% Similarity=0.331 Sum_probs=52.9
Q ss_pred cCCCCCCCCCCccceeeecccccccCC-h-----------------------h---------------HHHHHHHhhhcC
Q psy16312 27 VDEEHLPFAENSVDLLISNLALHWVNN-L-----------------------P---------------GCFQQVLKCLRQ 67 (245)
Q Consensus 27 ~D~~~l~~~~~~FD~Vis~~~l~~~~d-~-----------------------~---------------~~l~~i~r~Lkp 67 (245)
+..-.--+++++.|+++|.++|||+.. | . ..|+.=++-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 333333367899999999999999852 1 1 112223445889
Q ss_pred CcEEEEEecCCCc-----------HHHHHHHHHHHHHHhcCCC-----CCcccC--CCCHHHHHHHHHhCC-CeeeEEEE
Q psy16312 68 DGVFLASIFGGET-----------LYELRSAVHLAEMERRGGV-----ASHISP--FTQIRDVGSLLTRAG-FNMLTIDV 128 (245)
Q Consensus 68 GG~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~l~~aG-F~~~~~~~ 128 (245)
||+++++..+..+ +..+..+|.. +-..|.. .....| +++.+++.+.+++.| |++..++.
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~d--Mv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~ 253 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRD--MVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLEL 253 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHH--HHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEE
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHH--HHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEE
Confidence 9999988765432 1223333332 2222221 122223 578899999998655 77766665
Q ss_pred EeE
Q psy16312 129 DEI 131 (245)
Q Consensus 129 ~~~ 131 (245)
...
T Consensus 254 ~~~ 256 (334)
T PF03492_consen 254 FEQ 256 (334)
T ss_dssp EEE
T ss_pred Eee
Confidence 553
No 155
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0029 Score=54.31 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=54.9
Q ss_pred CcChHHHHHhhCCCCCCC--CceeEEEc-CCCCCCCCCCccceeeecc--c----cccc--CC-hhHHHHHHHhhhcCCc
Q psy16312 2 CDNCESILSQAEPPEDTE--VIYEKKFV-DEEHLPFAENSVDLLISNL--A----LHWV--NN-LPGCFQQVLKCLRQDG 69 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~--~~i~f~~~-D~~~l~~~~~~FD~Vis~~--~----l~~~--~d-~~~~l~~i~r~LkpGG 69 (245)
+|++..|++-|+.++... ....+... |+..+|+++.+||.|++-- . ..-. .+ ...+|+.+.++|++||
T Consensus 225 ~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG 304 (347)
T COG1041 225 SDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGG 304 (347)
T ss_pred cchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCc
Confidence 599999999999987642 34444554 9999999977899999621 1 1100 01 3478999999999999
Q ss_pred EEEEEe
Q psy16312 70 VFLASI 75 (245)
Q Consensus 70 ~l~~~~ 75 (245)
+++|..
T Consensus 305 ~~vf~~ 310 (347)
T COG1041 305 RIVFAA 310 (347)
T ss_pred EEEEec
Confidence 999885
No 156
>PHA03412 putative methyltransferase; Provisional
Probab=96.82 E-value=0.0019 Score=52.77 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=49.0
Q ss_pred CCcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccC--C----------hhHHHHHHHhhhcCC
Q psy16312 1 MCDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN--N----------LPGCFQQVLKCLRQD 68 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~--d----------~~~~l~~i~r~LkpG 68 (245)
.+|+++.|++.|+++.. ++.+..+|+...++ +++||+||||==++-.. + ...++..+.++++||
T Consensus 81 aVEID~~Al~~Ar~n~~---~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G 156 (241)
T PHA03412 81 CVELNHTYYKLGKRIVP---EATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG 156 (241)
T ss_pred EEECCHHHHHHHHhhcc---CCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence 37999999999998764 68899999987765 47999999975443221 1 335788888866666
Q ss_pred cE
Q psy16312 69 GV 70 (245)
Q Consensus 69 G~ 70 (245)
+.
T Consensus 157 ~~ 158 (241)
T PHA03412 157 TF 158 (241)
T ss_pred EE
Confidence 64
No 157
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.81 E-value=0.00095 Score=54.83 Aligned_cols=70 Identities=11% Similarity=0.003 Sum_probs=52.5
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCC-C-----CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEE
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHL-P-----FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l-~-----~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~ 72 (245)
+|+++.+++.|++++.. ..+++++++|+.+. + .+.++||+|+.... -+.....+..+.++|+|||.++
T Consensus 99 iD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii 175 (234)
T PLN02781 99 IDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIA 175 (234)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEE
Confidence 68999999999886531 24699999999763 2 11468999987532 1234578899999999999988
Q ss_pred EE
Q psy16312 73 AS 74 (245)
Q Consensus 73 ~~ 74 (245)
+.
T Consensus 176 ~d 177 (234)
T PLN02781 176 FD 177 (234)
T ss_pred EE
Confidence 76
No 158
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.79 E-value=0.00077 Score=59.64 Aligned_cols=74 Identities=14% Similarity=0.085 Sum_probs=51.3
Q ss_pred CcChHHHHHhhCCCCC--CC--CceeEEEcCCCCCC--C--CCCccceeeecccc---------cccCChhHHHHHHHhh
Q psy16312 2 CDNCESILSQAEPPED--TE--VIYEKKFVDEEHLP--F--AENSVDLLISNLAL---------HWVNNLPGCFQQVLKC 64 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~--~~i~f~~~D~~~l~--~--~~~~FD~Vis~~~l---------~~~~d~~~~l~~i~r~ 64 (245)
+|+|+.+++.|++++. +. .+++++++|+.+.- + ..++||+|+++--. ....+....+....++
T Consensus 249 VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~l 328 (396)
T PRK15128 249 VDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL 328 (396)
T ss_pred EECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999998654 21 36899999997642 1 24689999986321 0011233455567899
Q ss_pred hcCCcEEEEEe
Q psy16312 65 LRQDGVFLASI 75 (245)
Q Consensus 65 LkpGG~l~~~~ 75 (245)
|+|||.++...
T Consensus 329 Lk~gG~lv~~s 339 (396)
T PRK15128 329 LNPGGILLTFS 339 (396)
T ss_pred cCCCeEEEEEe
Confidence 99999987653
No 159
>PRK00536 speE spermidine synthase; Provisional
Probab=96.76 E-value=0.0049 Score=51.36 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=49.7
Q ss_pred CCcChHHHHHhhCCCCC------CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEE
Q psy16312 1 MCDNCESILSQAEPPED------TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~------~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
++|+.+.+++.+++.++ ..++++.+.. +.+ ...++||+||+-.. .....++.+++.|+|||.++..
T Consensus 99 mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~-----~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 99 FVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE-----PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC-----CChHHHHHHHHhcCCCcEEEEC
Confidence 47899999999998554 2477776652 211 12368999997643 4568889999999999999987
Q ss_pred e
Q psy16312 75 I 75 (245)
Q Consensus 75 ~ 75 (245)
.
T Consensus 171 s 171 (262)
T PRK00536 171 A 171 (262)
T ss_pred C
Confidence 4
No 160
>PLN02672 methionine S-methyltransferase
Probab=96.75 E-value=0.0043 Score=61.05 Aligned_cols=75 Identities=8% Similarity=-0.071 Sum_probs=51.4
Q ss_pred CCcChHHHHHhhCCCCCC------------------CCceeEEEcCCCCCCCC-CCccceeeeccc--------------
Q psy16312 1 MCDNCESILSQAEPPEDT------------------EVIYEKKFVDEEHLPFA-ENSVDLLISNLA-------------- 47 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~------------------~~~i~f~~~D~~~l~~~-~~~FD~Vis~~~-------------- 47 (245)
.+|+|+.+++.|++++.. ..+++|+++|+.+.... ...||+||||=-
T Consensus 147 avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV 226 (1082)
T PLN02672 147 GLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLV 226 (1082)
T ss_pred EEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhh
Confidence 379999999999775431 13689999998764321 236999998631
Q ss_pred cccc--------------------CC----hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 48 LHWV--------------------NN----LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 48 l~~~--------------------~d----~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
..+- .| ..+.+.+..++|+|||++++..
T Consensus 227 ~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 227 TENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred hhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 0000 00 1356778888999999999886
No 161
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.64 E-value=0.024 Score=49.82 Aligned_cols=95 Identities=20% Similarity=0.425 Sum_probs=57.6
Q ss_pred CCCCccceeeecccccccCCh--------------------------------------hHHHHHHHhhhcCCcEEEEEe
Q psy16312 34 FAENSVDLLISNLALHWVNNL--------------------------------------PGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 34 ~~~~~FD~Vis~~~l~~~~d~--------------------------------------~~~l~~i~r~LkpGG~l~~~~ 75 (245)
|+.++.++++|.++|||+... ..+|+.=++-|.|||+++++.
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 678999999999999999631 122333345688999999988
Q ss_pred cCCCc--------HHH-----HHHHHHHHHHHhcCCCC-----CcccC--CCCHHHHHHHHHhCC-CeeeEEEEEe
Q psy16312 76 FGGET--------LYE-----LRSAVHLAEMERRGGVA-----SHISP--FTQIRDVGSLLTRAG-FNMLTIDVDE 130 (245)
Q Consensus 76 ~~~~~--------~~~-----~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~l~~aG-F~~~~~~~~~ 130 (245)
.+..+ ... +..+|. .+-..|... ....| +++.+++.+.+++.| |.+..++...
T Consensus 238 ~Gr~~~~~~~~~~~~~~~~~~l~~al~--dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~ 311 (386)
T PLN02668 238 LGRTSVDPTDQGGAGLLFGTHFQDAWD--DLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFK 311 (386)
T ss_pred ecCCCCCcccCCchhHHHHHHHHHHHH--HHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEee
Confidence 66521 111 112221 111122211 12222 578999999999777 7666666543
No 162
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.0058 Score=51.49 Aligned_cols=76 Identities=16% Similarity=0.083 Sum_probs=54.2
Q ss_pred CCcChHHHHHhhCCCCCC--CCceeEEEcCCCCCCCCCCccceeeecccccccCCh-----hHHHHHHHhhhcCCcEEEE
Q psy16312 1 MCDNCESILSQAEPPEDT--EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNL-----PGCFQQVLKCLRQDGVFLA 73 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~--~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~-----~~~l~~i~r~LkpGG~l~~ 73 (245)
++|+|...++.|+++... ..+..+...|.. .+.. ++||+|+||=-||-=.+. .+.+++..+.|++||.|.+
T Consensus 187 mvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~-~~v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 187 LVDVNARAVESARKNLAANGVENTEVWASNLY-EPVE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred EEecCHHHHHHHHHhHHHcCCCccEEEEeccc-cccc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 579999999999997652 223334444443 3444 399999999888743322 2688999999999999888
Q ss_pred EecCC
Q psy16312 74 SIFGG 78 (245)
Q Consensus 74 ~~~~~ 78 (245)
...+.
T Consensus 265 Van~~ 269 (300)
T COG2813 265 VANRH 269 (300)
T ss_pred EEcCC
Confidence 76433
No 163
>KOG2352|consensus
Probab=96.52 E-value=0.007 Score=53.96 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=60.0
Q ss_pred CcChHHHHHhhCCCC-CCCCceeEEEcCCCCCCCCCCccceeeecccccccC-C---------hhHHHHHHHhhhcCCcE
Q psy16312 2 CDNCESILSQAEPPE-DTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVN-N---------LPGCFQQVLKCLRQDGV 70 (245)
Q Consensus 2 iD~S~~ml~~A~~~~-~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~-d---------~~~~l~~i~r~LkpGG~ 70 (245)
+|+|+-.++....+. ...+-+.+...|+..+.|++++||+|+--..++.+- | ....+.+++|+|+|||+
T Consensus 77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCE
Confidence 688998888777765 344668999999999999999999999988887762 1 12457899999999998
Q ss_pred EEEEec
Q psy16312 71 FLASIF 76 (245)
Q Consensus 71 l~~~~~ 76 (245)
++..+.
T Consensus 157 ~~svtl 162 (482)
T KOG2352|consen 157 YISVTL 162 (482)
T ss_pred EEEEEe
Confidence 765443
No 164
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.51 E-value=0.0069 Score=47.47 Aligned_cols=69 Identities=17% Similarity=0.099 Sum_probs=53.3
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCC-CCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHL-PFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l-~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|-++++++..++++. +.+|++.+.+|+-+. +-. .+||.|+...+ .+.+.+|+.+...|||||++++..
T Consensus 64 Ie~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~-~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 64 IERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL-PSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred EecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-CCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 5666777777666433 257899999999764 322 38999998777 367899999999999999999885
No 165
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.50 E-value=0.003 Score=53.19 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=55.9
Q ss_pred CCcChHHHHHhhCCCCCC------CCceeEEEcCCCCC-CCCCCccceeeecccccccCCh------hHHHHHHHhhhcC
Q psy16312 1 MCDNCESILSQAEPPEDT------EVIYEKKFVDEEHL-PFAENSVDLLISNLALHWVNNL------PGCFQQVLKCLRQ 67 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~------~~~i~f~~~D~~~l-~~~~~~FD~Vis~~~l~~~~d~------~~~l~~i~r~Lkp 67 (245)
++|+.+..++.|++.++. .+++..+..|.-.. .-..++||+|++-..=. . .| ..+++.+++.|+|
T Consensus 105 ~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~ 182 (282)
T COG0421 105 MVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDP-V-GPAEALFTEEFYEGCRRALKE 182 (282)
T ss_pred EEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCC-C-CcccccCCHHHHHHHHHhcCC
Confidence 478999999999997652 37889999998663 32235899999866532 1 22 6789999999999
Q ss_pred CcEEEEEe
Q psy16312 68 DGVFLASI 75 (245)
Q Consensus 68 GG~l~~~~ 75 (245)
+|.++...
T Consensus 183 ~Gi~v~q~ 190 (282)
T COG0421 183 DGIFVAQA 190 (282)
T ss_pred CcEEEEec
Confidence 99999873
No 166
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.35 E-value=0.0067 Score=50.40 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=64.2
Q ss_pred CcChHHHHHhhCCCCCCCCc--eeEEEcCCCCCC--CC----CCccc-----eeeecccccccCC---hhHHHHHHHhhh
Q psy16312 2 CDNCESILSQAEPPEDTEVI--YEKKFVDEEHLP--FA----ENSVD-----LLISNLALHWVNN---LPGCFQQVLKCL 65 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~--i~f~~~D~~~l~--~~----~~~FD-----~Vis~~~l~~~~d---~~~~l~~i~r~L 65 (245)
+|..|-.++.++..+...++ ..++.+|+.+.. +. .+-+| .|+...+|||++| +..+++.++..|
T Consensus 101 VD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~l 180 (267)
T PF04672_consen 101 VDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDAL 180 (267)
T ss_dssp EESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS
T ss_pred ECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhC
Confidence 57778778877776554455 889999997632 00 12233 5677889999965 778999999999
Q ss_pred cCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeee
Q psy16312 66 RQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNML 124 (245)
Q Consensus 66 kpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~ 124 (245)
.||.+|+++-.+.+...+........ +.. ......+.+.+++..+|. ||+.+
T Consensus 181 apGS~L~ish~t~d~~p~~~~~~~~~-~~~----~~~~~~~Rs~~ei~~~f~--g~elv 232 (267)
T PF04672_consen 181 APGSYLAISHATDDGAPERAEALEAV-YAQ----AGSPGRPRSREEIAAFFD--GLELV 232 (267)
T ss_dssp -TT-EEEEEEEB-TTSHHHHHHHHHH-HHH----CCS----B-HHHHHHCCT--TSEE-
T ss_pred CCCceEEEEecCCCCCHHHHHHHHHH-HHc----CCCCceecCHHHHHHHcC--CCccC
Confidence 99999999865544322221111111 111 111223567888888874 88764
No 167
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.33 E-value=0.0023 Score=51.01 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=50.9
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCC-CC--CCCCccceeeecccccccCCh--------hHHHHHHHhhhcCC
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEH-LP--FAENSVDLLISNLALHWVNNL--------PGCFQQVLKCLRQD 68 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~-l~--~~~~~FD~Vis~~~l~~~~d~--------~~~l~~i~r~LkpG 68 (245)
+|++...+..|.+++. +..|+.++++|+.. ++ ++++++|.|+.++-=-|.... ...+..++++|+||
T Consensus 47 iE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g 126 (195)
T PF02390_consen 47 IEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPG 126 (195)
T ss_dssp EES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred EecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCC
Confidence 4666666666655432 34789999999987 33 456899999998877777532 26899999999999
Q ss_pred cEEEEEe
Q psy16312 69 GVFLASI 75 (245)
Q Consensus 69 G~l~~~~ 75 (245)
|.+.+.+
T Consensus 127 G~l~~~T 133 (195)
T PF02390_consen 127 GELYFAT 133 (195)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9998886
No 168
>KOG3178|consensus
Probab=96.27 E-value=0.033 Score=47.77 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=69.1
Q ss_pred cChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChh--HHHHHHHhhhcCCcEEEEEec-CCC
Q psy16312 3 DNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLP--GCFQQVLKCLRQDGVFLASIF-GGE 79 (245)
Q Consensus 3 D~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~--~~l~~i~r~LkpGG~l~~~~~-~~~ 79 (245)
+.....+-.++..+. +.|+.+-+|+-.- .| .-|+|+..++||++.|-+ +.|++++..|+|||.+++... .+.
T Consensus 206 nfdlp~v~~~a~~~~--~gV~~v~gdmfq~-~P--~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 206 NFDLPFVLAAAPYLA--PGVEHVAGDMFQD-TP--KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred ecCHHHHHhhhhhhc--CCcceeccccccc-CC--CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 344444544444442 3588888888643 33 226999999999998755 899999999999998876542 221
Q ss_pred --cHHH-------HHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeEEE
Q psy16312 80 --TLYE-------LRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127 (245)
Q Consensus 80 --~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~~~ 127 (245)
.... ....+... .. ...--.+..+++.++.++||.+..+-
T Consensus 281 e~~~dd~~s~v~~~~d~lm~~-~~-------~~Gkert~~e~q~l~~~~gF~~~~~~ 329 (342)
T KOG3178|consen 281 EDKFDDIDSSVTRDMDLLMLT-QT-------SGGKERTLKEFQALLPEEGFPVCMVA 329 (342)
T ss_pred CCCccccccceeehhHHHHHH-Hh-------ccceeccHHHHHhcchhhcCceeEEE
Confidence 1110 01111111 00 00112367899999999999875443
No 169
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.26 E-value=0.018 Score=47.53 Aligned_cols=68 Identities=12% Similarity=0.017 Sum_probs=50.0
Q ss_pred cChHHHHHhhCCCCC---CCCceeEEEcCCCCCCCC---CCccceeeecccccccCChhHHHHHHHhhh-cCCcEEEEEe
Q psy16312 3 DNCESILSQAEPPED---TEVIYEKKFVDEEHLPFA---ENSVDLLISNLALHWVNNLPGCFQQVLKCL-RQDGVFLASI 75 (245)
Q Consensus 3 D~S~~ml~~A~~~~~---~~~~i~f~~~D~~~l~~~---~~~FD~Vis~~~l~~~~d~~~~l~~i~r~L-kpGG~l~~~~ 75 (245)
|..+..++.|++++. ...++++.+.|+..-.+. +..||.|+. -+++|..++..+.++| ||||++++=.
T Consensus 72 E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 72 EFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 566778888877543 235799999999654332 367999976 4679999999999999 8999876543
No 170
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.23 E-value=0.00076 Score=56.85 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=50.6
Q ss_pred CcChHHHHHhhCCCCC--C--CCceeEEEcCCCC-CC-C-CCCccceeee------cccccccCChhHHHHHHHhhhcCC
Q psy16312 2 CDNCESILSQAEPPED--T--EVIYEKKFVDEEH-LP-F-AENSVDLLIS------NLALHWVNNLPGCFQQVLKCLRQD 68 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~--~~~i~f~~~D~~~-l~-~-~~~~FD~Vis------~~~l~~~~d~~~~l~~i~r~LkpG 68 (245)
||.|..+|+.|++++. + ..+++|++.|+.+ +. + ..++||+||+ ...+.-..+....+..+.++|+||
T Consensus 152 VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~g 231 (286)
T PF10672_consen 152 VDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPG 231 (286)
T ss_dssp EES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEE
T ss_pred EeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 7999999999998653 2 2468999999865 22 1 2468999995 111111235667889999999999
Q ss_pred cEEEEEe
Q psy16312 69 GVFLASI 75 (245)
Q Consensus 69 G~l~~~~ 75 (245)
|.+++++
T Consensus 232 G~l~~~s 238 (286)
T PF10672_consen 232 GLLLTCS 238 (286)
T ss_dssp EEEEEEE
T ss_pred CEEEEEc
Confidence 9987765
No 171
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.20 E-value=0.0025 Score=54.05 Aligned_cols=69 Identities=17% Similarity=0.143 Sum_probs=46.3
Q ss_pred CcChHHHHHhhCCCCCC-CCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPEDT-EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|++|..++.|++++.. +....+.+....+. ..+.||+|++|-...=+ ...+..+.++|+|||+++++-
T Consensus 190 ~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~--~~~~~dlvvANI~~~vL---~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 190 IDIDPLAVEAARENAELNGVEDRIEVSLSEDL--VEGKFDLVVANILADVL---LELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp EESSCHHHHHHHHHHHHTT-TTCEEESCTSCT--CCS-EEEEEEES-HHHH---HHHHHHCHHHEEEEEEEEEEE
T ss_pred ecCCHHHHHHHHHHHHHcCCCeeEEEEEeccc--ccccCCEEEECCCHHHH---HHHHHHHHHhhCCCCEEEEcc
Confidence 68999999999886531 11113333322222 24899999998765433 567888999999999999985
No 172
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.08 E-value=0.0056 Score=49.53 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=52.2
Q ss_pred CcChHHHHHhhCCCCC---CCCceeEEE-cCCCCC-C-CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEE
Q psy16312 2 CDNCESILSQAEPPED---TEVIYEKKF-VDEEHL-P-FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~---~~~~i~f~~-~D~~~l-~-~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
||.++++.+.|+++.. -...|..+. +|+.+. . ...++||+|+.-.. =.+....+..+.++|+|||.+++.
T Consensus 90 iE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDad---K~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 90 IERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDAD---KADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEeCC---hhhCHHHHHHHHHHhCCCcEEEEe
Confidence 7899999999999643 234578777 476542 2 34689999986321 224568999999999999999876
No 173
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.83 E-value=0.0038 Score=54.91 Aligned_cols=75 Identities=15% Similarity=0.051 Sum_probs=54.9
Q ss_pred CcChHHHHHhhCCCCC--C--CCceeEEEcCCCCC-C---CCCCccceeeec---------ccccccCChhHHHHHHHhh
Q psy16312 2 CDNCESILSQAEPPED--T--EVIYEKKFVDEEHL-P---FAENSVDLLISN---------LALHWVNNLPGCFQQVLKC 64 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~--~~~i~f~~~D~~~l-~---~~~~~FD~Vis~---------~~l~~~~d~~~~l~~i~r~ 64 (245)
||+|...|+.|++++. + ...+.|+++|+-++ . -...+||+|+.- ..+.-..|...++..+.++
T Consensus 246 VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~i 325 (393)
T COG1092 246 VDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRL 325 (393)
T ss_pred EeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHH
Confidence 7999999999999754 2 24578999999653 2 223589999941 1122234566889999999
Q ss_pred hcCCcEEEEEec
Q psy16312 65 LRQDGVFLASIF 76 (245)
Q Consensus 65 LkpGG~l~~~~~ 76 (245)
|+|||.+++++.
T Consensus 326 L~pgG~l~~~s~ 337 (393)
T COG1092 326 LAPGGTLVTSSC 337 (393)
T ss_pred cCCCCEEEEEec
Confidence 999999988753
No 174
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.69 E-value=0.0054 Score=50.78 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=52.5
Q ss_pred CCcChHHHHHhhCCCCC------CCCceeEEEcCCCCC-CCCCC-ccceeeecccccccCC----hhHHHHHHHhhhcCC
Q psy16312 1 MCDNCESILSQAEPPED------TEVIYEKKFVDEEHL-PFAEN-SVDLLISNLALHWVNN----LPGCFQQVLKCLRQD 68 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~------~~~~i~f~~~D~~~l-~~~~~-~FD~Vis~~~l~~~~d----~~~~l~~i~r~LkpG 68 (245)
++|+++.+++.|++.++ ..++++.+.+|+... .-..+ +||+|+.-..-...+. -...++.+++.|+||
T Consensus 105 ~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~ 184 (246)
T PF01564_consen 105 VVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD 184 (246)
T ss_dssp EEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE
T ss_pred EEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC
Confidence 37899999999988553 247899999998653 22224 8999997443222211 247899999999999
Q ss_pred cEEEEEe
Q psy16312 69 GVFLASI 75 (245)
Q Consensus 69 G~l~~~~ 75 (245)
|.+++..
T Consensus 185 Gv~v~~~ 191 (246)
T PF01564_consen 185 GVLVLQA 191 (246)
T ss_dssp EEEEEEE
T ss_pred cEEEEEc
Confidence 9998875
No 175
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.56 E-value=0.012 Score=44.95 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=34.3
Q ss_pred CCccceeeecccccccC--------Ch---hHHHHHHHhhhcCCcEEEEEec
Q psy16312 36 ENSVDLLISNLALHWVN--------NL---PGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 36 ~~~FD~Vis~~~l~~~~--------d~---~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
.++||.+.|.+++.|+. || .+++.++.++|||||.+++.++
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 47899999999998872 22 2789999999999999999874
No 176
>KOG3201|consensus
Probab=95.49 E-value=0.03 Score=42.83 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=34.4
Q ss_pred CCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 36 ENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 36 ~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
.++||.|+|+.++.+-.-....++.|.++|+|.|..++..
T Consensus 101 q~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred hCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEec
Confidence 3689999999999877777889999999999999866553
No 177
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.39 E-value=0.015 Score=52.30 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=49.8
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCC----CCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEH----LPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~----l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+|+.|++.|++++. +..+++|+++|+.+ +++.+++||+|+++-- +. .....+..+.+ ++|++.+++++
T Consensus 325 vD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP--r~-g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 325 VEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP--RA-GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred EeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC--Cc-ChHHHHHHHHh-cCCCeEEEEEe
Confidence 7999999999998653 23479999999965 2344578999987432 11 12345555555 68999999996
No 178
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.38 E-value=0.049 Score=46.81 Aligned_cols=74 Identities=11% Similarity=0.024 Sum_probs=53.8
Q ss_pred CcChHHHHHhhCCCCC--CCCceeE--EEcCCCC----CCC--CCCccceeee-cccccccCChh--HHHHHHHh-hhcC
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEK--KFVDEEH----LPF--AENSVDLLIS-NLALHWVNNLP--GCFQQVLK-CLRQ 67 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f--~~~D~~~----l~~--~~~~FD~Vis-~~~l~~~~d~~--~~l~~i~r-~Lkp 67 (245)
||+|..+|+.+.++.. ..+.+.+ +++|..+ ++- ......+|+. .+++..++..+ .+|+++++ +|+|
T Consensus 110 lDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~ 189 (319)
T TIGR03439 110 LDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP 189 (319)
T ss_pred EECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC
Confidence 7999999999988776 3455555 7888865 221 1234566665 45888885444 67899999 9999
Q ss_pred CcEEEEEe
Q psy16312 68 DGVFLASI 75 (245)
Q Consensus 68 GG~l~~~~ 75 (245)
||.|++..
T Consensus 190 ~d~lLiG~ 197 (319)
T TIGR03439 190 SDSFLIGL 197 (319)
T ss_pred CCEEEEec
Confidence 99998875
No 179
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=95.30 E-value=0.022 Score=51.56 Aligned_cols=76 Identities=8% Similarity=0.011 Sum_probs=52.9
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCC-CCCCccceee----ecccccccCCh------------------hH
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLP-FAENSVDLLI----SNLALHWVNNL------------------PG 56 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~-~~~~~FD~Vi----s~~~l~~~~d~------------------~~ 56 (245)
.|+++.-++..++++. +..|+.+.+.|...++ ...+.||.|+ |+..=.+-.++ ..
T Consensus 144 ~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~ 223 (470)
T PRK11933 144 NEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRE 223 (470)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHH
Confidence 5778877777766443 2357888889988764 2246899999 55433333333 45
Q ss_pred HHHHHHhhhcCCcEEEEEecC
Q psy16312 57 CFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 57 ~l~~i~r~LkpGG~l~~~~~~ 77 (245)
.|.++.+.|||||+++-++.+
T Consensus 224 iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 224 LIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred HHHHHHHHcCCCcEEEEECCC
Confidence 788999999999999888644
No 180
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.26 E-value=0.018 Score=45.23 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=46.6
Q ss_pred CcChHHHHHhhCCCCC---CCCceeEEEcCCCCCCCCCCccceeeeccccccc-CC-------hhHHHHHHHhhhcC
Q psy16312 2 CDNCESILSQAEPPED---TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWV-NN-------LPGCFQQVLKCLRQ 67 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~---~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~-~d-------~~~~l~~i~r~Lkp 67 (245)
.|+++.|++.|++++. -...+.+.+.|+.++++.++++|.|+++--..-- .+ ...+++++.++|++
T Consensus 67 ~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 67 SDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred cCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 5899999999988653 1245899999999999777899999997543321 11 12567888899999
No 181
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.13 E-value=0.091 Score=44.36 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=45.4
Q ss_pred CcChHHHHHhhCCCCCC-C-CceeEEEcCCCCCCCCCCccceeeecccccccCC--------------------------
Q psy16312 2 CDNCESILSQAEPPEDT-E-VIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN-------------------------- 53 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~-~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d-------------------------- 53 (245)
+|+|+..++.|++++.. . .++.+++.|..+ ++. ++||+|+||= -|++.
T Consensus 140 ~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~-~~fDlIVsNP--PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~ 215 (280)
T COG2890 140 VDISPDALALARENAERNGLVRVLVVQSDLFE-PLR-GKFDLIVSNP--PYIPAEDPELLPEVVRYEPLLALVGGGDGLE 215 (280)
T ss_pred EECCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccC-CceeEEEeCC--CCCCCcccccChhhhccCHHHHHccCccHHH
Confidence 79999999999987652 1 344455554322 222 5899999873 12221
Q ss_pred -hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 54 -LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 54 -~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
....+.++.+.|+|||.+++..
T Consensus 216 ~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 216 VYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred HHHHHHHhhHHHcCCCcEEEEEE
Confidence 1245667778888888877764
No 182
>PLN02476 O-methyltransferase
Probab=94.61 E-value=0.041 Score=46.27 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=51.5
Q ss_pred CcChHHHHHhhCCCCC---CCCceeEEEcCCCC-CC-C----CCCccceeeecccccccCChhHHHHHHHhhhcCCcEEE
Q psy16312 2 CDNCESILSQAEPPED---TEVIYEKKFVDEEH-LP-F----AENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~---~~~~i~f~~~D~~~-l~-~----~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~ 72 (245)
+|.++.+++.|++.+. -..+|+++.+|+.+ |+ + .+++||+|+.-.. =.+....+..+.++|+|||.++
T Consensus 149 iE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV 225 (278)
T PLN02476 149 CERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIV 225 (278)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEE
Confidence 6888999999988543 23579999999865 32 1 1368999986332 1234577888999999999998
Q ss_pred EE
Q psy16312 73 AS 74 (245)
Q Consensus 73 ~~ 74 (245)
+.
T Consensus 226 ~D 227 (278)
T PLN02476 226 MD 227 (278)
T ss_pred Ee
Confidence 86
No 183
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.51 E-value=0.022 Score=47.76 Aligned_cols=74 Identities=7% Similarity=-0.059 Sum_probs=48.9
Q ss_pred CcChHHHHHhhCCCCC----CCCceeEEEcCCCCCCCCCCccceeeeccccc-ccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED----TEVIYEKKFVDEEHLPFAENSVDLLISNLALH-WVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~----~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~-~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+++..++.|++-.. -..++.|.++|..+.+..-..||+|+.+.... --.+...++.++.+.++||..+++-.
T Consensus 152 iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 152 IDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 6899999998877322 13579999999987765446899988655432 22378899999999999999988763
No 184
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.48 E-value=0.12 Score=42.27 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=45.4
Q ss_pred ceeEEEcCCCCCC---CCCCccceeeecccccccCCh--------hHHHHHHHhhhcCCcEEEEEe
Q psy16312 21 IYEKKFVDEEHLP---FAENSVDLLISNLALHWVNNL--------PGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 21 ~i~f~~~D~~~l~---~~~~~FD~Vis~~~l~~~~d~--------~~~l~~i~r~LkpGG~l~~~~ 75 (245)
|+...+.|+..+- +++++.|-|+.++.=-|.... ...++.++++|+|||.|.+.+
T Consensus 99 Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 99 NLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred cEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 8999999997642 345699999999888887542 368999999999999999886
No 185
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=94.42 E-value=0.067 Score=41.24 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=57.0
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCC-----CCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEE
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLP-----FAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~-----~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~ 74 (245)
++.|+++.....++++ .+.++.+|+.++. .....||.|+|..-+-.++- .-+.|+.+...|.+||.++.-
T Consensus 79 iE~~~dF~~~L~~~~p---~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 79 IEYSPDFVCHLNQLYP---GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred EEeCHHHHHHHHHhCC---CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 5678888888888876 4668899998775 44568999999877766653 236799999999999988766
Q ss_pred ecCC
Q psy16312 75 IFGG 78 (245)
Q Consensus 75 ~~~~ 78 (245)
+.++
T Consensus 156 tYgp 159 (194)
T COG3963 156 TYGP 159 (194)
T ss_pred EecC
Confidence 5554
No 186
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.33 E-value=0.041 Score=49.45 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCCCCCCCccceeeecccccccC---ChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 30 EHLPFAENSVDLLISNLALHWVN---NLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 30 ~~l~~~~~~FD~Vis~~~l~~~~---d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
|.++.-+.+||+|.+...|.... +...+|-++-|+|+|||.+++..
T Consensus 419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 34454468999999998877664 46688999999999999999874
No 187
>PRK13699 putative methylase; Provisional
Probab=94.25 E-value=0.12 Score=42.22 Aligned_cols=48 Identities=17% Similarity=0.482 Sum_probs=33.0
Q ss_pred eEEEcCCCCC--CCCCCccceeeec--ccc----------------cccCChhHHHHHHHhhhcCCcEEEE
Q psy16312 23 EKKFVDEEHL--PFAENSVDLLISN--LAL----------------HWVNNLPGCFQQVLKCLRQDGVFLA 73 (245)
Q Consensus 23 ~f~~~D~~~l--~~~~~~FD~Vis~--~~l----------------~~~~d~~~~l~~i~r~LkpGG~l~~ 73 (245)
++.++|+.++ .++++++|+|+.. +.+ .| ....+.+++|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew---~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEW---LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHH---HHHHHHHHHHHcCCCCEEEE
Confidence 4566777553 4667888888863 111 12 24788999999999998765
No 188
>KOG1661|consensus
Probab=94.25 E-value=0.072 Score=42.59 Aligned_cols=50 Identities=16% Similarity=0.062 Sum_probs=41.0
Q ss_pred CceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 20 VIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 20 ~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
.++.++++|....-.+...||.|++-.+ -....+++...|+|||++++-.
T Consensus 144 ~~l~ivvGDgr~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 144 GELSIVVGDGRKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CceEEEeCCccccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEee
Confidence 4678999999988777789999999754 3466778889999999998874
No 189
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=94.10 E-value=0.025 Score=45.51 Aligned_cols=71 Identities=21% Similarity=0.145 Sum_probs=50.8
Q ss_pred CcChHHHHHhhCCCC---CCCCceeEEEcCCCC-CC-----CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEE
Q psy16312 2 CDNCESILSQAEPPE---DTEVIYEKKFVDEEH-LP-----FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~~ml~~A~~~~---~~~~~i~f~~~D~~~-l~-----~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~ 72 (245)
+|+++.+.+.|++.+ +-..+|+++++|+.+ ++ ...+.||+|+.-.. =.+....+..+.++|+|||.++
T Consensus 76 iE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii 152 (205)
T PF01596_consen 76 IEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGGVII 152 (205)
T ss_dssp EESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEE
T ss_pred ecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc---ccchhhHHHHHhhhccCCeEEE
Confidence 678889999988743 223579999999965 22 11368999987442 2244567888899999999999
Q ss_pred EEe
Q psy16312 73 ASI 75 (245)
Q Consensus 73 ~~~ 75 (245)
+..
T Consensus 153 ~DN 155 (205)
T PF01596_consen 153 ADN 155 (205)
T ss_dssp EET
T ss_pred Ecc
Confidence 873
No 190
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=94.09 E-value=0.037 Score=47.55 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=47.2
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCC-CCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPF-AENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~-~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+|+.|++.|++++. +..+++|+++|++++.. ..+.||+|+++-- .- .....+.++...++|++.+++++
T Consensus 201 vD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP--r~-G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 201 IEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP--RR-GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred EeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC--CC-CccHHHHHHHHHcCCCeEEEEEC
Confidence 7999999999988653 23479999999987642 2357999998621 00 11223333344467877777775
No 191
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=93.96 E-value=0.036 Score=45.88 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=49.9
Q ss_pred CcChHHHHHhhCCCCC---CCCceeEEEcCCCC-CC-C-----CCCccceeeecccccccCChhHHHHHHHhhhcCCcEE
Q psy16312 2 CDNCESILSQAEPPED---TEVIYEKKFVDEEH-LP-F-----AENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVF 71 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~---~~~~i~f~~~D~~~-l~-~-----~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l 71 (245)
+|.++.+.+.|++.+. -..+|+++++|+.+ |+ + ..++||+|+.-.- =......+..+.++|+|||.+
T Consensus 110 iE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGvi 186 (247)
T PLN02589 110 MDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVI 186 (247)
T ss_pred EeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEE
Confidence 5788888888887542 23679999999865 23 1 1268999986432 123346677888999999998
Q ss_pred EEE
Q psy16312 72 LAS 74 (245)
Q Consensus 72 ~~~ 74 (245)
++.
T Consensus 187 v~D 189 (247)
T PLN02589 187 GYD 189 (247)
T ss_pred EEc
Confidence 875
No 192
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=93.90 E-value=0.027 Score=44.42 Aligned_cols=51 Identities=20% Similarity=0.116 Sum_probs=41.0
Q ss_pred CceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 20 VIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 20 ~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
.|+++.+..+++ +....+||+|+|..+- .....+.-+...|++||.+++.-
T Consensus 98 ~nv~v~~~R~E~-~~~~~~fd~v~aRAv~----~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 98 SNVEVINGRAEE-PEYRESFDVVTARAVA----PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp SSEEEEES-HHH-TTTTT-EEEEEEESSS----SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCEEEEEeeecc-cccCCCccEEEeehhc----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 579999999998 4445899999998763 67789999999999999988763
No 193
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.87 E-value=0.029 Score=42.04 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=49.2
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCC--CCCCccceeeecccccccCC--------hh---HHHHHHHhhh
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLP--FAENSVDLLISNLALHWVNN--------LP---GCFQQVLKCL 65 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~--~~~~~FD~Vis~~~l~~~~d--------~~---~~l~~i~r~L 65 (245)
.|+=+..|+.++++... ..+++++...=+.+. .+.+++|+|+.| |.|+|. ++ .+++.+.++|
T Consensus 5 FDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~al~lL 82 (140)
T PF06962_consen 5 FDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAALELL 82 (140)
T ss_dssp EES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHHHHHE
T ss_pred EECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHHHHhh
Confidence 47777888888776542 246888887766664 233589999876 557763 22 6788999999
Q ss_pred cCCcEEEEEecCCCc
Q psy16312 66 RQDGVFLASIFGGET 80 (245)
Q Consensus 66 kpGG~l~~~~~~~~~ 80 (245)
+|||.+.+......+
T Consensus 83 ~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 83 KPGGIITIVVYPGHP 97 (140)
T ss_dssp EEEEEEEEEE--STC
T ss_pred ccCCEEEEEEeCCCC
Confidence 999999888754433
No 194
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=93.69 E-value=0.13 Score=44.55 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=52.1
Q ss_pred CCcChHHHHHhhCCCC-----C----CCCceeEEEcCCCCCC-CCCCccceeeecccccccCChh----------HHHHH
Q psy16312 1 MCDNCESILSQAEPPE-----D----TEVIYEKKFVDEEHLP-FAENSVDLLISNLALHWVNNLP----------GCFQQ 60 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~-----~----~~~~i~f~~~D~~~l~-~~~~~FD~Vis~~~l~~~~d~~----------~~l~~ 60 (245)
++|+.|.|++.+++.. + ..++++++..|+-++- -..+.||.||.- ++||. .+..-
T Consensus 318 lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVD-----l~DP~tps~~rlYS~eFY~l 392 (508)
T COG4262 318 LVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVD-----LPDPSTPSIGRLYSVEFYRL 392 (508)
T ss_pred EEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEe-----CCCCCCcchhhhhhHHHHHH
Confidence 5899999999999532 1 2588999999987642 234689999863 33443 46778
Q ss_pred HHhhhcCCcEEEEEe
Q psy16312 61 VLKCLRQDGVFLASI 75 (245)
Q Consensus 61 i~r~LkpGG~l~~~~ 75 (245)
+.+.|+++|.+++..
T Consensus 393 l~~~l~e~Gl~VvQa 407 (508)
T COG4262 393 LSRHLAETGLMVVQA 407 (508)
T ss_pred HHHhcCcCceEEEec
Confidence 889999999999874
No 195
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=93.58 E-value=0.048 Score=43.62 Aligned_cols=73 Identities=5% Similarity=-0.036 Sum_probs=48.6
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCC-CCCCCCccceeeecccccccCC-hhHHHHHHHh--hhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEH-LPFAENSVDLLISNLALHWVNN-LPGCFQQVLK--CLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~-l~~~~~~FD~Vis~~~l~~~~d-~~~~l~~i~r--~LkpGG~l~~~~ 75 (245)
+|.++.+++.|++++. +..++.++++|+.+ ++...++||+|+++=-. ... ...+++.+.. +|+|+|.++++.
T Consensus 82 vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy--~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 82 LEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF--RKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred EECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC--CCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 6889999998887643 22468999999865 33223579999986442 112 2344555544 378899888886
Q ss_pred c
Q psy16312 76 F 76 (245)
Q Consensus 76 ~ 76 (245)
.
T Consensus 160 ~ 160 (199)
T PRK10909 160 E 160 (199)
T ss_pred c
Confidence 3
No 196
>PRK11524 putative methyltransferase; Provisional
Probab=93.48 E-value=0.054 Score=45.80 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=38.5
Q ss_pred ceeEEEcCCCCC--CCCCCccceeeec--ccc--c------------ccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 21 IYEKKFVDEEHL--PFAENSVDLLISN--LAL--H------------WVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 21 ~i~f~~~D~~~l--~~~~~~FD~Vis~--~~l--~------------~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+..+.++|+.+. .+++++||+|++. +.+ . |..-....+.+++++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 456788898774 3667899999983 221 0 00112468899999999999988753
No 197
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.36 E-value=0.23 Score=39.31 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=41.7
Q ss_pred ccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCc---HHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHH
Q psy16312 38 SVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGET---LYELRSAVHLAEMERRGGVASHISPFTQIRDVGS 114 (245)
Q Consensus 38 ~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (245)
++|+++-+--+| -....++.+.+++.|||||.+++......+ +.+.. .....+...+..
T Consensus 130 ~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~-----------------~~~ri~~a~V~a 191 (238)
T COG4798 130 QNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTI-----------------TLHRIDPAVVIA 191 (238)
T ss_pred hhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhh-----------------hhcccChHHHHH
Confidence 444444433333 234668899999999999999887532211 11110 111335667788
Q ss_pred HHHhCCCee
Q psy16312 115 LLTRAGFNM 123 (245)
Q Consensus 115 ~l~~aGF~~ 123 (245)
..+.+||..
T Consensus 192 ~veaaGFkl 200 (238)
T COG4798 192 EVEAAGFKL 200 (238)
T ss_pred HHHhhccee
Confidence 888999986
No 198
>KOG3987|consensus
Probab=93.15 E-value=0.07 Score=42.61 Aligned_cols=67 Identities=9% Similarity=0.096 Sum_probs=48.6
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcC-CcEEEEEe
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQ-DGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~Lkp-GG~l~~~~ 75 (245)
.++|..|+.+.+.+- |.+...-+..-.+=.||+|.|...|.-..+|-+.|..++.+|+| +|++++..
T Consensus 140 TElS~tMr~rL~kk~-------ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 140 TELSWTMRDRLKKKN-------YNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHhhHHHHHHHhhcC-------CceeeehhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 467888888877642 11222222222234699999999999999999999999999999 79887764
No 199
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=92.94 E-value=0.068 Score=47.95 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=48.6
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCC----CCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHL----PFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l----~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+|+.|++.|++++. +..+++|+++|+++. ++.+++||+|+..-. ...-...+++.+. .|+|++.+++++
T Consensus 320 vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP--r~G~~~~~l~~l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 320 IEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP--RKGCAAEVLRTII-ELKPERIVYVSC 396 (431)
T ss_pred EEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC--CCCCCHHHHHHHH-hcCCCEEEEEcC
Confidence 7999999999998653 235799999999752 233467999986322 0100235566555 488998888875
No 200
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=92.47 E-value=0.087 Score=46.51 Aligned_cols=70 Identities=9% Similarity=0.066 Sum_probs=51.8
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+++.+++.+++++. +..++.+.++|+..+....+.||+|+..- . ..+..++....+.++|||.++++.
T Consensus 87 ~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~---Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 87 NDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F---GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred EeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C---CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 6899999999988653 22456789999876432136799998842 1 345678888788899999999984
No 201
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=92.43 E-value=0.1 Score=47.06 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=36.7
Q ss_pred CceeEEEcCCCCCCCCCCccceeeecccccccC--ChhHHHHHHHhhhcCCcEEE
Q psy16312 20 VIYEKKFVDEEHLPFAENSVDLLISNLALHWVN--NLPGCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 20 ~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~--d~~~~l~~i~r~LkpGG~l~ 72 (245)
.+|+++.+|++++..+ ...|+|||=.+=.+.. -....|....+.|||||.++
T Consensus 241 ~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 241 DKVTVIHGDMREVELP-EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTEEEEES-TTTSCHS-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CeEEEEeCcccCCCCC-CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5799999999999886 6999999843222221 23367889999999999875
No 202
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=91.96 E-value=0.1 Score=47.92 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=45.6
Q ss_pred CCceeEEEcCCCCCC--CCCCccceeeecccccccCCh--------hHHHHHHHhhhcCCcEEEEEe
Q psy16312 19 EVIYEKKFVDEEHLP--FAENSVDLLISNLALHWVNNL--------PGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 19 ~~~i~f~~~D~~~l~--~~~~~FD~Vis~~~l~~~~d~--------~~~l~~i~r~LkpGG~l~~~~ 75 (245)
..|+.+.+.|++.+. ++++++|.|+.++-=-|.... ...+..++++|||||.+.+.+
T Consensus 396 l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 396 ITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 357888888876432 667899999999988887532 368999999999999998875
No 203
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=91.86 E-value=0.12 Score=43.07 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=39.0
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccc
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHW 50 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~ 50 (245)
+|+++.|++.+++++....+++++++|+..++++ .||.|++|.-.+.
T Consensus 57 vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 57 IELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred EECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCCccc
Confidence 7999999999998765446899999999998875 5899999877553
No 204
>KOG2798|consensus
Probab=91.81 E-value=0.53 Score=40.04 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=48.4
Q ss_pred CCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHH
Q psy16312 36 ENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSL 115 (245)
Q Consensus 36 ~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (245)
.++||+|+..+-+..-.+.-.-|+.|..+|||||+.+=. ||-. +.. ....+..+...--.+.+++..+
T Consensus 257 ~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNl--GPLl-------YHF---~d~~g~~~~~siEls~edl~~v 324 (369)
T KOG2798|consen 257 AGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINL--GPLL-------YHF---EDTHGVENEMSIELSLEDLKRV 324 (369)
T ss_pred CCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEec--ccee-------eec---cCCCCCcccccccccHHHHHHH
Confidence 358999987755544456667899999999999976522 1100 000 0000001111112467888999
Q ss_pred HHhCCCeeeEEE
Q psy16312 116 LTRAGFNMLTID 127 (245)
Q Consensus 116 l~~aGF~~~~~~ 127 (245)
....||+++.-.
T Consensus 325 ~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 325 ASHRGFEVEKER 336 (369)
T ss_pred HHhcCcEEEEee
Confidence 999999986554
No 205
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.27 E-value=0.36 Score=42.58 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=48.0
Q ss_pred CceeEEEcCCCCCC--CCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEEecC
Q psy16312 20 VIYEKKFVDEEHLP--FAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 20 ~~i~f~~~D~~~l~--~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~~~~ 77 (245)
.+++++++++++.- .++++||.++....+.|+++ ....++++.+.++|||++++-..+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 47889999987742 45799999999999999965 447799999999999999886544
No 206
>KOG2904|consensus
Probab=91.14 E-value=0.46 Score=39.70 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=56.1
Q ss_pred CCcChHHHHHhhCCCCC---CCCceeEEEcCCCC-----CCCCCCccceeeecccccccC--C-----------------
Q psy16312 1 MCDNCESILSQAEPPED---TEVIYEKKFVDEEH-----LPFAENSVDLLISNLALHWVN--N----------------- 53 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~---~~~~i~f~~~D~~~-----l~~~~~~FD~Vis~~~l~~~~--d----------------- 53 (245)
.+|.|+..+..|.+++. ....+..++.+++. .+...+.+|+++||=- ++. |
T Consensus 177 AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lAL 254 (328)
T KOG2904|consen 177 AIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLAL 254 (328)
T ss_pred EEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCC--cccccchhhcCchheecCchhhh
Confidence 37999999999988653 23467777776654 2344689999999742 121 1
Q ss_pred ---------hhHHHHHHHhhhcCCcEEEEEecCCCcHHHHHHHH
Q psy16312 54 ---------LPGCFQQVLKCLRQDGVFLASIFGGETLYELRSAV 88 (245)
Q Consensus 54 ---------~~~~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~~~ 88 (245)
....+.-+.|.|+|||.+.+.+........+...|
T Consensus 255 dGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 255 DGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIW 298 (328)
T ss_pred ccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHH
Confidence 11345667899999999999876443333443333
No 207
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=90.52 E-value=0.39 Score=39.83 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=43.7
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccc---eeeecccccccCChhHHHHHHHhhhcCCcE
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVD---LLISNLALHWVNNLPGCFQQVLKCLRQDGV 70 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD---~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~ 70 (245)
+|+++.|++.+++++....+++++++|+..+++. .|| +|++|...+.. ...+.++.. .+|+.
T Consensus 57 iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~i~---~~il~~ll~--~~~~~ 121 (253)
T TIGR00755 57 IEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLPYNIS---SPLIFKLLE--KPKFR 121 (253)
T ss_pred EECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCChhhH---HHHHHHHhc--cCCCc
Confidence 6899999999988765446899999999998875 567 88888765432 233333333 55554
No 208
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=89.97 E-value=1.5 Score=37.75 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=32.3
Q ss_pred CcChHHHHHhhCCCCCCC----CceeEEE-cCCCCCC----CCCCccceeeeccccc
Q psy16312 2 CDNCESILSQAEPPEDTE----VIYEKKF-VDEEHLP----FAENSVDLLISNLALH 49 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~----~~i~f~~-~D~~~l~----~~~~~FD~Vis~~~l~ 49 (245)
+|+++.+++.|+++.... .+|.+++ .|...+. ...+.||+|+||==++
T Consensus 144 tDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 144 SDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred EeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCc
Confidence 799999999999865432 2466654 3433322 2357899999986554
No 209
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=89.84 E-value=0.45 Score=41.22 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=56.7
Q ss_pred CcChHHHHHhhCCCCC--CC-CceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 2 CDNCESILSQAEPPED--TE-VIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~-~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
+|++|..++..+++.. .. ..+..+++|+...+..-+.||.|+++.- .+....+....+.+++||.+.+-.+.+
T Consensus 217 ~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 217 IDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred EecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccc
Confidence 6899999998888543 22 3388999999988766588999998753 355678888899999999988776544
No 210
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=89.48 E-value=0.35 Score=39.06 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=44.5
Q ss_pred HHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEE
Q psy16312 8 ILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 8 ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
+|+.+.+..+ .+|++++++.+|++.-....||+|+|..+- +....+.-+...||+||.+++-
T Consensus 106 FL~~~~~eL~-L~nv~i~~~RaE~~~~~~~~~D~vtsRAva----~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 106 FLREVKKELG-LENVEIVHGRAEEFGQEKKQYDVVTSRAVA----SLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred HHHHHHHHhC-CCCeEEehhhHhhcccccccCcEEEeehcc----chHHHHHHHHHhcccCCcchhh
Confidence 4445544443 267999999999987432229999998653 6677788888999999987643
No 211
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.19 E-value=0.33 Score=42.47 Aligned_cols=74 Identities=14% Similarity=0.023 Sum_probs=49.2
Q ss_pred CCcChHHHHHhhCCCCC---CCCceeEEEcCCCCCCCCCCccceeeecc--cccccCCh---hHH----HHHHHhhhcCC
Q psy16312 1 MCDNCESILSQAEPPED---TEVIYEKKFVDEEHLPFAENSVDLLISNL--ALHWVNNL---PGC----FQQVLKCLRQD 68 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~---~~~~i~f~~~D~~~l~~~~~~FD~Vis~~--~l~~~~d~---~~~----l~~i~r~LkpG 68 (245)
++|+++.||+.|+.++. -...|+|.++|+..++-+-+.+|+||||- ..- +.+. ..+ .+.+++.++--
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCC
Confidence 36999999999998643 23569999999999875447899999974 211 1122 222 23444555555
Q ss_pred cEEEEEe
Q psy16312 69 GVFLASI 75 (245)
Q Consensus 69 G~l~~~~ 75 (245)
++++|++
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 6777774
No 212
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=89.11 E-value=0.49 Score=36.84 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=36.4
Q ss_pred CceeEEEcCCCC-C--C-CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 20 VIYEKKFVDEEH-L--P-FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 20 ~~i~f~~~D~~~-l--~-~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
.++.+...|=.+ . . +..+.||+|++.-+++.-.....++.-+.++|+|+|.+++..
T Consensus 97 ~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 97 GRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp ---EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred ccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 456777666433 1 1 234689999999999988788899999999999999877765
No 213
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=89.05 E-value=5.2 Score=33.36 Aligned_cols=102 Identities=12% Similarity=0.020 Sum_probs=61.5
Q ss_pred CceeEEEcCCCC-C-------CCCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEEecCCCcHHHHHH-HH
Q psy16312 20 VIYEKKFVDEEH-L-------PFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASIFGGETLYELRS-AV 88 (245)
Q Consensus 20 ~~i~f~~~D~~~-l-------~~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~-~~ 88 (245)
.+.+++.+|+.. + .+..+.--++++-.++++++. ...+++.+.+...||+.+++....+... +... ..
T Consensus 132 ~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~-~~~~~~~ 210 (260)
T TIGR00027 132 AHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDG-EWRAGMR 210 (260)
T ss_pred CceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccch-hHHHHHH
Confidence 467888888862 1 122234458889999999964 4478999998888999999987554111 1110 01
Q ss_pred HHHHHHhc-CCCCCcccCCCCHHHHHHHHHhCCCee
Q psy16312 89 HLAEMERR-GGVASHISPFTQIRDVGSLLTRAGFNM 123 (245)
Q Consensus 89 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aGF~~ 123 (245)
... .... +..........+.+++.++|...||..
T Consensus 211 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~ 245 (260)
T TIGR00027 211 APV-YHAARGVDGSGLVFGIDRADVAEWLAERGWRA 245 (260)
T ss_pred HHH-HHhhhcccccccccCCChhhHHHHHHHCCCee
Confidence 100 0010 011111222346788999999999986
No 214
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=89.00 E-value=0.26 Score=41.42 Aligned_cols=46 Identities=9% Similarity=-0.087 Sum_probs=36.6
Q ss_pred CCcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeeccc
Q psy16312 1 MCDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLA 47 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~ 47 (245)
.+|+++.|++.+++++.. .+++++++|+..+++++-.+|.|++|.-
T Consensus 69 avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 69 AVEIDRDLAPILAETFAE-DNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred EEECCHHHHHHHHHhhcc-CceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 379999999999887654 6899999999998875322588988753
No 215
>KOG1709|consensus
Probab=88.47 E-value=0.66 Score=37.42 Aligned_cols=70 Identities=16% Similarity=0.080 Sum_probs=43.4
Q ss_pred ChHHHHHhhCCCCC-CCCceeEEEcCCCC-CC-CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEE
Q psy16312 4 NCESILSQAEPPED-TEVIYEKKFVDEEH-LP-FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLA 73 (245)
Q Consensus 4 ~S~~ml~~A~~~~~-~~~~i~f~~~D~~~-l~-~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~ 73 (245)
..|+.++.-+.... +..||-.+.+-=++ ++ +++++||-|+--.--.+..|...+.+.+.|+|||+|++-+
T Consensus 132 ~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 132 AHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 34444444443322 12345444443333 22 5578899998654445566888889999999999999854
No 216
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=87.97 E-value=0.41 Score=42.17 Aligned_cols=71 Identities=7% Similarity=-0.039 Sum_probs=48.1
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCC-CCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPF-AENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~-~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+|+.+++.|++++. +..+++|.++|+++... ....||+|++.=- .-.-...++..+. .++|++.+++++
T Consensus 261 vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP--r~G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 261 IEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP--RRGIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC--CCCCcHHHHHHHH-hcCCCeEEEEEe
Confidence 7999999999998653 22479999999976431 1246999987522 1111224455554 579999999886
No 217
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.81 E-value=2.9 Score=33.48 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=42.6
Q ss_pred CceeEEEcCCCCCC--------CCCCccceeeeccc----ccccCChh-------HHHHHHHhhhcCCcEEEEEecCCCc
Q psy16312 20 VIYEKKFVDEEHLP--------FAENSVDLLISNLA----LHWVNNLP-------GCFQQVLKCLRQDGVFLASIFGGET 80 (245)
Q Consensus 20 ~~i~f~~~D~~~l~--------~~~~~FD~Vis~~~----l~~~~d~~-------~~l~~i~r~LkpGG~l~~~~~~~~~ 80 (245)
+++.++++|+..-+ +....+|+|+|-++ -+|.-|.. .++.-+..+|+|||.|++-.+-...
T Consensus 85 ~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 85 PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred CCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 57899999997644 34455799997443 23333432 4566677899999999987764444
Q ss_pred HHH
Q psy16312 81 LYE 83 (245)
Q Consensus 81 ~~~ 83 (245)
...
T Consensus 165 ~~~ 167 (205)
T COG0293 165 FED 167 (205)
T ss_pred HHH
Confidence 333
No 218
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=87.56 E-value=1 Score=43.19 Aligned_cols=74 Identities=15% Similarity=0.054 Sum_probs=49.6
Q ss_pred CcChHHHHHhhCCCCC--C-CCceeEEEcCCCCCCCC--CCccceeeecccccc-c---CChhHHHHHHHhhhc---CCc
Q psy16312 2 CDNCESILSQAEPPED--T-EVIYEKKFVDEEHLPFA--ENSVDLLISNLALHW-V---NNLPGCFQQVLKCLR---QDG 69 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~-~~~i~f~~~D~~~l~~~--~~~FD~Vis~~~l~~-~---~d~~~~l~~i~r~Lk---pGG 69 (245)
+|+++.|++.|++++. + ...++|.++|+.+++.. .++||+|++|-=..- + .+...+..++.+.|+ ||+
T Consensus 262 ~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~ 341 (702)
T PRK11783 262 SDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGW 341 (702)
T ss_pred EECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCC
Confidence 6999999999999753 2 23589999999988654 357999999832211 1 123344444445554 888
Q ss_pred EEEEEe
Q psy16312 70 VFLASI 75 (245)
Q Consensus 70 ~l~~~~ 75 (245)
.+++.+
T Consensus 342 ~~~llt 347 (702)
T PRK11783 342 NAALFS 347 (702)
T ss_pred eEEEEe
Confidence 876654
No 219
>KOG3420|consensus
Probab=87.02 E-value=0.4 Score=36.19 Aligned_cols=48 Identities=17% Similarity=0.046 Sum_probs=40.0
Q ss_pred CcChHHHHHhhCCCCCC-CCceeEEEcCCCCCCCCCCccceeeeccccc
Q psy16312 2 CDNCESILSQAEPPEDT-EVIYEKKFVDEEHLPFAENSVDLLISNLALH 49 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~ 49 (245)
+|+.|..|+.+++++.. ..++.++++|+.++.+..+.||.++.+--+.
T Consensus 77 fDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 77 FDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred eecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 69999999999998763 3568999999999988889999998776554
No 220
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.73 E-value=0.36 Score=38.05 Aligned_cols=43 Identities=19% Similarity=0.051 Sum_probs=34.8
Q ss_pred CCcChHHHHHhhCCCCCC-CCceeEEEcCCCCCCCCCCccceeeecc
Q psy16312 1 MCDNCESILSQAEPPEDT-EVIYEKKFVDEEHLPFAENSVDLLISNL 46 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~l~~~~~~FD~Vis~~ 46 (245)
++|+.+++++.|++++.. ..++.|.++|+.+.. +.||.|+.|=
T Consensus 73 ~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNP 116 (198)
T COG2263 73 AVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNP 116 (198)
T ss_pred EEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECC
Confidence 479999999999998763 357999999999886 5688777753
No 221
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=86.63 E-value=0.24 Score=39.66 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=42.5
Q ss_pred CcChHHHHHhhCCCCC---CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEE
Q psy16312 2 CDNCESILSQAEPPED---TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~---~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~ 72 (245)
+|++|..++..++... -..++...++|+..+.. .+.||.|+++.- ..-...|..+.+++++||.+-
T Consensus 131 ~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 131 VDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred ecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence 5788887777766432 12458889999988765 589999998642 233468888999999999864
No 222
>KOG1663|consensus
Probab=86.17 E-value=1.1 Score=36.41 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=38.2
Q ss_pred CceeEEEcCCCC-CC-----CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEE
Q psy16312 20 VIYEKKFVDEEH-LP-----FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 20 ~~i~f~~~D~~~-l~-----~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
..|+++++++.+ |+ .+.++||+|+.- +|=.+....+.++.++||+||.+++.
T Consensus 125 ~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 125 HKITFIEGPALESLDELLADGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ceeeeeecchhhhHHHHHhcCCCCceeEEEEc---cchHHHHHHHHHHHhhcccccEEEEe
Confidence 468999998854 32 346899999752 23233447788999999999999886
No 223
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=85.88 E-value=0.66 Score=34.11 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=32.2
Q ss_pred CceeEEEcCCCC-CCCCCCccceeeecccccccCCh----hHHHHHHHhhhcCCcEEE
Q psy16312 20 VIYEKKFVDEEH-LPFAENSVDLLISNLALHWVNNL----PGCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 20 ~~i~f~~~D~~~-l~~~~~~FD~Vis~~~l~~~~d~----~~~l~~i~r~LkpGG~l~ 72 (245)
..++...+|+.+ ++--...||+|+-- .+---.+| ..++++++++++|||.+.
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylD-gFsP~~nPelWs~e~~~~l~~~~~~~~~l~ 87 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLD-GFSPAKNPELWSEELFKKLARLSKPGGTLA 87 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE--SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEec-CCCCcCCcccCCHHHHHHHHHHhCCCcEEE
Confidence 346677788864 33223789999853 22222344 378999999999998766
No 224
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=85.81 E-value=1.2 Score=38.93 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=45.7
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCC---CCCCccceeee----c--ccc------cccCC----------h
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLP---FAENSVDLLIS----N--LAL------HWVNN----------L 54 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~---~~~~~FD~Vis----~--~~l------~~~~d----------~ 54 (245)
+|.|+.=+...+.+.. +..|+...+.|...++ ...+.||.|.. + .++ -|-.. .
T Consensus 188 ~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ 267 (355)
T COG0144 188 VDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQ 267 (355)
T ss_pred EcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHH
Confidence 4667755555554332 1245778888877654 22235999983 2 122 12211 2
Q ss_pred hHHHHHHHhhhcCCcEEEEEec
Q psy16312 55 PGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 55 ~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
...|....+.|||||.++.++.
T Consensus 268 ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 268 KEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred HHHHHHHHHhcCCCCEEEEEcc
Confidence 2578899999999999988864
No 225
>KOG1500|consensus
Probab=85.24 E-value=1.2 Score=38.45 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=45.9
Q ss_pred HHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeeccc-ccccC-ChhHHHHHHHhhhcCCcEEEEE
Q psy16312 6 ESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLA-LHWVN-NLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 6 ~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~-l~~~~-d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
.+|.+.|++..++ ..+|.++-+-+|++.++ +..|+|||--+ -..+. ..-...-..++.|+|.|..+-+
T Consensus 209 S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 209 SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 4688888775432 25688999999998887 78999998432 22221 1223344567999999987643
No 226
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=83.80 E-value=1.3 Score=37.31 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=41.5
Q ss_pred CCcChHHHHHhhCCCCCCCCcee---EEEcCC-CCCCCCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEE
Q psy16312 1 MCDNCESILSQAEPPEDTEVIYE---KKFVDE-EHLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~~~~i~---f~~~D~-~~l~~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~ 74 (245)
++|.|+.|++.++.-.....+.. +..... +..++. ..|+|+++++|.-+++ ...+++.+.+.+.+ .+++.
T Consensus 63 ~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlV 138 (274)
T PF09243_consen 63 CVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLV 138 (274)
T ss_pred eecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEE
Confidence 47999999998877443211111 111111 112332 3399999999999987 12344444444444 77666
Q ss_pred ecC
Q psy16312 75 IFG 77 (245)
Q Consensus 75 ~~~ 77 (245)
..|
T Consensus 139 EpG 141 (274)
T PF09243_consen 139 EPG 141 (274)
T ss_pred cCC
Confidence 543
No 227
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=83.07 E-value=0.75 Score=40.52 Aligned_cols=70 Identities=7% Similarity=0.073 Sum_probs=52.4
Q ss_pred CcChHHHHHhhCCCCCC--CCceeEEEcCCCCCC-CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPEDT--EVIYEKKFVDEEHLP-FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~--~~~i~f~~~D~~~l~-~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|+++..++.++++... ..++.+.+.|+..+- .....||+|..-- + ..+...+..+.+.+++||.+.++.
T Consensus 75 nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 75 NDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 68999999999886542 235788888887642 1235799998743 2 355689999999999999999884
No 228
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=78.92 E-value=0.89 Score=38.67 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=37.7
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCCCCCCCccceeeeccccccc
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHLPFAENSVDLLISNLALHWV 51 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~ 51 (245)
+|+++.|++.+++++.. ..+++++++|+...+++ .||+|++|.-.++.
T Consensus 64 vEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlPY~Is 114 (294)
T PTZ00338 64 IEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVPYQIS 114 (294)
T ss_pred EECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCCcccC
Confidence 79999999999886531 35799999999887653 68999998665544
No 229
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=77.40 E-value=13 Score=30.62 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=39.1
Q ss_pred CcChHHHHHhhCCCCCC-CCceeEEEcCCCC-CCCC-CCccceeeec--ccccccCChhHHHHHHHhhhcCCc-EEEEEe
Q psy16312 2 CDNCESILSQAEPPEDT-EVIYEKKFVDEEH-LPFA-ENSVDLLISN--LALHWVNNLPGCFQQVLKCLRQDG-VFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~-~~~i~f~~~D~~~-l~~~-~~~FD~Vis~--~~l~~~~d~~~~l~~i~r~LkpGG-~l~~~~ 75 (245)
+|+.+.+++.-++.+.. +.+|+.++.|+.. ||-. .++||++++. .++ .-...++.+....||.-| ..++..
T Consensus 73 vDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~---~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 73 VDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYTP---EGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp E-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SSH---HHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred EEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCCH---HHHHHHHHHHHHHhCCCCceEEEEE
Confidence 68889888887764431 2459999999975 5522 4899999872 121 123467888889999666 555553
No 230
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=77.38 E-value=1.3 Score=38.87 Aligned_cols=63 Identities=8% Similarity=0.047 Sum_probs=43.0
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCC-C-CC--------------CCccceeeecccccccCChh------HH
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHL-P-FA--------------ENSVDLLISNLALHWVNNLP------GC 57 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l-~-~~--------------~~~FD~Vis~~~l~~~~d~~------~~ 57 (245)
+|.|+.|++.|++++. +..+++|.++|+.+. + +. ...||+|+. ||. .+
T Consensus 234 vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~l--------DPPR~G~~~~~ 305 (362)
T PRK05031 234 TEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFV--------DPPRAGLDDET 305 (362)
T ss_pred EECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEE--------CCCCCCCcHHH
Confidence 7999999999998653 234799999999763 1 10 125899986 333 33
Q ss_pred HHHHHhhhcCCcEEEEEe
Q psy16312 58 FQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 58 l~~i~r~LkpGG~l~~~~ 75 (245)
++.+ .+|++.+++++
T Consensus 306 l~~l---~~~~~ivyvSC 320 (362)
T PRK05031 306 LKLV---QAYERILYISC 320 (362)
T ss_pred HHHH---HccCCEEEEEe
Confidence 3433 34788888886
No 231
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=76.06 E-value=5.1 Score=31.07 Aligned_cols=42 Identities=24% Similarity=0.432 Sum_probs=24.9
Q ss_pred CccceeeecccccccCC----h-------hHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 37 NSVDLLISNLALHWVNN----L-------PGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 37 ~~FD~Vis~~~l~~~~d----~-------~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
+.||+|+|-.+.....+ . ..++.-+...|+|||.+++-.+..
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 68999999774333322 1 134555567899999998877654
No 232
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=75.09 E-value=2.4 Score=38.11 Aligned_cols=66 Identities=15% Similarity=0.074 Sum_probs=48.1
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCCC---CCccceeeecccccccCChh-----HHHHHHHhhhcCCcEE
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPFA---ENSVDLLISNLALHWVNNLP-----GCFQQVLKCLRQDGVF 71 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~~---~~~FD~Vis~~~l~~~~d~~-----~~l~~i~r~LkpGG~l 71 (245)
+++++++++.|++++. +..|++|..++++..... ...||.|+. ||. ..+-+....++|-..+
T Consensus 321 vEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l~~~~p~~Iv 392 (432)
T COG2265 321 VEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV--------DPPRAGADREVLKQLAKLKPKRIV 392 (432)
T ss_pred EecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE--------CCCCCCCCHHHHHHHHhcCCCcEE
Confidence 6899999999998654 346799999999986533 257899986 443 2333444556788888
Q ss_pred EEEe
Q psy16312 72 LASI 75 (245)
Q Consensus 72 ~~~~ 75 (245)
++++
T Consensus 393 YVSC 396 (432)
T COG2265 393 YVSC 396 (432)
T ss_pred EEeC
Confidence 9986
No 233
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=74.68 E-value=1.4 Score=38.44 Aligned_cols=63 Identities=6% Similarity=0.007 Sum_probs=42.2
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCCCC-----------C-----CCccceeeecccccccCChh------HH
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHLPF-----------A-----ENSVDLLISNLALHWVNNLP------GC 57 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l~~-----------~-----~~~FD~Vis~~~l~~~~d~~------~~ 57 (245)
+|+|+.|++.|++++. +..+++|+++|++++-- . ...||+|+. ||. .+
T Consensus 225 vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~l--------DPPR~G~~~~~ 296 (353)
T TIGR02143 225 TEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFV--------DPPRAGLDPDT 296 (353)
T ss_pred EECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEE--------CCCCCCCcHHH
Confidence 7999999999998753 23478999999976311 0 013788775 332 33
Q ss_pred HHHHHhhhcCCcEEEEEe
Q psy16312 58 FQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 58 l~~i~r~LkpGG~l~~~~ 75 (245)
++. +++|++.+++++
T Consensus 297 l~~---l~~~~~ivYvsC 311 (353)
T TIGR02143 297 CKL---VQAYERILYISC 311 (353)
T ss_pred HHH---HHcCCcEEEEEc
Confidence 333 345888888886
No 234
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=74.60 E-value=5.9 Score=32.36 Aligned_cols=62 Identities=10% Similarity=-0.071 Sum_probs=36.8
Q ss_pred CCcChHHHHHh-hCCCCCCCCce-eEEEcCCCCC-----CCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEE
Q psy16312 1 MCDNCESILSQ-AEPPEDTEVIY-EKKFVDEEHL-----PFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLA 73 (245)
Q Consensus 1 ~iD~S~~ml~~-A~~~~~~~~~i-~f~~~D~~~l-----~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~ 73 (245)
.+|+|++|+.. .++.. ++ .+...|+..+ +..-..||+++++.+ ..+..+.+.|+| |.+++
T Consensus 103 avD~~~~~l~~~l~~~~----~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 103 GVDVGYNQLAEKLRQDE----RVKVLERTNIRYVTPADIFPDFATFDVSFISLI--------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred EEeCCHHHHHHHHhcCC----CeeEeecCCcccCCHhHcCCCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEE
Confidence 37999988876 33322 22 2333344432 222246786666543 258899999999 87665
Q ss_pred Ee
Q psy16312 74 SI 75 (245)
Q Consensus 74 ~~ 75 (245)
-.
T Consensus 170 L~ 171 (228)
T TIGR00478 170 LF 171 (228)
T ss_pred Ec
Confidence 53
No 235
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=73.64 E-value=17 Score=25.41 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHhCCCeeeEEEEEeEEEeC
Q psy16312 106 FTQIRDVGSLLTRAGFNMLTIDVDEIVIHY 135 (245)
Q Consensus 106 ~~~~~~~~~~l~~aGF~~~~~~~~~~~~~~ 135 (245)
......+.+.+.++||++...+.....+++
T Consensus 60 ~~~e~~l~~~l~~~g~~~~r~~ris~gFY~ 89 (97)
T PF07109_consen 60 PHREEDLRRALAAAGWRIGRTERISSGFYI 89 (97)
T ss_pred EeCHHHHHHHHHhCCCeeeecccccCcChH
Confidence 356788999999999998766655444444
No 236
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=71.92 E-value=4.8 Score=32.74 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=43.1
Q ss_pred CcChH----HHHHhhCCCCCCCCceeEEEcCCCCCC----CCCCccceeeecccccccCC-hhHHHHHHHhhhcCCcEEE
Q psy16312 2 CDNCE----SILSQAEPPEDTEVIYEKKFVDEEHLP----FAENSVDLLISNLALHWVNN-LPGCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~----~ml~~A~~~~~~~~~i~f~~~D~~~l~----~~~~~FD~Vis~~~l~~~~d-~~~~l~~i~r~LkpGG~l~ 72 (245)
++.|+ .+++.|++| +||-=+..|+..-. +- +..|+|++--+ -+| ..-++.++..-||+||.++
T Consensus 104 VEfs~r~~rdL~~la~~R----~NIiPIl~DAr~P~~Y~~lv-~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 104 VEFSPRSMRDLLNLAKKR----PNIIPILEDARHPEKYRMLV-EMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp EESSHHHHHHHHHHHHHS----TTEEEEES-TTSGGGGTTTS---EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEecchhHHHHHHHhccC----CceeeeeccCCChHHhhccc-ccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEE
Confidence 34555 667777766 46777888987421 32 48999987543 123 3356778889999999999
Q ss_pred EEe
Q psy16312 73 ASI 75 (245)
Q Consensus 73 ~~~ 75 (245)
++.
T Consensus 176 i~i 178 (229)
T PF01269_consen 176 ISI 178 (229)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 237
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=69.33 E-value=10 Score=30.46 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=48.9
Q ss_pred CcChHHHHHhhCCCCC---CCCceeEEEcCCC-CCCCCCCccceeee-cccccccCChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 2 CDNCESILSQAEPPED---TEVIYEKKFVDEE-HLPFAENSVDLLIS-NLALHWVNNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~---~~~~i~f~~~D~~-~l~~~~~~FD~Vis-~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+|++++-++.|+++.. ...+++++++|.. .++.. +..|.|+- -++-.- ....|.+....++..-.|++.
T Consensus 27 ~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~-e~~d~ivIAGMGG~l---I~~ILe~~~~~~~~~~~lILq-- 100 (205)
T PF04816_consen 27 VDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG-EDVDTIVIAGMGGEL---IIEILEAGPEKLSSAKRLILQ-- 100 (205)
T ss_dssp EESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG-G---EEEEEEE-HHH---HHHHHHHTGGGGTT--EEEEE--
T ss_pred EeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC-CCCCEEEEecCCHHH---HHHHHHhhHHHhccCCeEEEe--
Confidence 6899999999988543 2356899999854 44432 22576554 333211 234444444555444455555
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeeeE
Q psy16312 77 GGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLT 125 (245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~ 125 (245)
|......++++|.+.||.++.
T Consensus 101 ----------------------------P~~~~~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 101 ----------------------------PNTHAYELRRWLYENGFEIID 121 (205)
T ss_dssp ----------------------------ESS-HHHHHHHHHHTTEEEEE
T ss_pred ----------------------------CCCChHHHHHHHHHCCCEEEE
Confidence 222356788889999998753
No 238
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=68.26 E-value=2.3 Score=33.95 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=19.7
Q ss_pred ChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 53 NLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 53 d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
-....+.+++|+|||||.+++.+
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~~ 56 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIFI 56 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhcCCCeeEEEEe
Confidence 35788999999999999988765
No 239
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=68.15 E-value=12 Score=29.41 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=31.8
Q ss_pred CCCCccceeeecccccccC------------ChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 34 FAENSVDLLISNLALHWVN------------NLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 34 ~~~~~FD~Vis~~~l~~~~------------d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
+..+..|+|+.|++|+-+. +.++.+..+..+|+|+-.+++.+-
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt 100 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTA 100 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecC
Confidence 4567899999999997663 344566677777778888887753
No 240
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=68.07 E-value=2.7 Score=35.77 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=39.2
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCC--CCCC--ccceeeecccc--cccCChhHH
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLP--FAEN--SVDLLISNLAL--HWVNNLPGC 57 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~--~~~~--~FD~Vis~~~l--~~~~d~~~~ 57 (245)
+|.++.|++.|++++....+++++++|+.++. +..+ +||.|++.... +.+.++++-
T Consensus 50 iD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLGvSs~Qld~~~RG 111 (296)
T PRK00050 50 IDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLGVSSPQLDDAERG 111 (296)
T ss_pred EcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEECCCccccccCCCcCC
Confidence 79999999999987643357999999998764 2222 79999985543 233454443
No 241
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=67.60 E-value=8.3 Score=30.63 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=47.6
Q ss_pred CcChHHHHHhhCCC--CCCCCceeEEEcCCCCCCCCCCccceeeecccccc--cCChhHHHHHHHhhhcCCcEEE
Q psy16312 2 CDNCESILSQAEPP--EDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHW--VNNLPGCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~~ml~~A~~~--~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~--~~d~~~~l~~i~r~LkpGG~l~ 72 (245)
|+..|.-...|.++ .++..|++.+++|+.+..| ..-|+|+|-+.=-- ....-.++..+..-||-.|.++
T Consensus 60 iE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 60 IEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred EecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 34455555666665 4456789999999999998 46799998543111 1233467888888888888776
No 242
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=66.87 E-value=4.9 Score=34.39 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.2
Q ss_pred ChhHHHHHHHhhhcCCcEEEEEecC
Q psy16312 53 NLPGCFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 53 d~~~~l~~i~r~LkpGG~l~~~~~~ 77 (245)
....+|..+..+|+|||++++.+|.
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecC
Confidence 4568899999999999999887654
No 243
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=66.85 E-value=4 Score=32.23 Aligned_cols=73 Identities=5% Similarity=-0.088 Sum_probs=44.3
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCC-CC-C-CCC-ccceeeecccccccCChhHHHHHHH--hhhcCCcEEE
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEH-LP-F-AEN-SVDLLISNLALHWVNNLPGCFQQVL--KCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~-l~-~-~~~-~FD~Vis~~~l~~~~d~~~~l~~i~--r~LkpGG~l~ 72 (245)
+|.++.+++.++++... ..+++++++|+.. +. + ... .||+|+.-=-... .....++..+. .+|+++|.++
T Consensus 78 vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv 156 (189)
T TIGR00095 78 EEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIV 156 (189)
T ss_pred EeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEE
Confidence 68899999888876431 1368899999944 22 2 122 4777776222111 12334444443 4688999888
Q ss_pred EEe
Q psy16312 73 ASI 75 (245)
Q Consensus 73 ~~~ 75 (245)
+..
T Consensus 157 ~E~ 159 (189)
T TIGR00095 157 VEE 159 (189)
T ss_pred EEe
Confidence 874
No 244
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=66.78 E-value=15 Score=31.20 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=31.1
Q ss_pred ceeEEEcCCC-CCC----CCCCccceeee-cccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 21 IYEKKFVDEE-HLP----FAENSVDLLIS-NLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 21 ~i~f~~~D~~-~l~----~~~~~FD~Vis-~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
.|+|+-.|.. .|+ + .+.||+|+. ..+.|.+. |. +.++++|||.+++.+
T Consensus 201 kVhFLPld~~~~L~~K~ky-~~~Fd~ifvs~s~vh~L~-p~-----l~~~~a~~A~LvvEt 254 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKY-QNFFDLIFVSCSMVHFLK-PE-----LFQALAPDAVLVVET 254 (289)
T ss_pred EEEEeCchHHHHHhhHHhh-cCCCCEEEEhhhhHhhcc-hH-----HHHHhCCCCEEEEEc
Confidence 4556554432 233 2 378998885 44555553 32 778999999999886
No 245
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=65.98 E-value=5.1 Score=34.07 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.1
Q ss_pred ChhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 53 NLPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 53 d~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
..+.+|..+.++|+|||++++.+|..
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 56789999999999999998877543
No 246
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=65.81 E-value=4.2 Score=34.60 Aligned_cols=74 Identities=11% Similarity=-0.010 Sum_probs=43.0
Q ss_pred CcChHHHHHhhCCCC--CC--CCceeEEEcCCCCCCCC--CCccceeeeccccccc--C------Ch-------------
Q psy16312 2 CDNCESILSQAEPPE--DT--EVIYEKKFVDEEHLPFA--ENSVDLLISNLALHWV--N------NL------------- 54 (245)
Q Consensus 2 iD~S~~ml~~A~~~~--~~--~~~i~f~~~D~~~l~~~--~~~FD~Vis~~~l~~~--~------d~------------- 54 (245)
+|+++.++..|+.+. .+ ..+.....+|.-..+.. ...||+|+++--+.-. . +.
T Consensus 83 ~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (311)
T PF02384_consen 83 IEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE 162 (311)
T ss_dssp EES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH
T ss_pred ecCcHHHHHHHHhhhhhhccccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchh
Confidence 477787777775432 11 23345777887554432 4789999986432211 0 10
Q ss_pred hHHHHHHHhhhcCCcEEEEEe
Q psy16312 55 PGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 55 ~~~l~~i~r~LkpGG~l~~~~ 75 (245)
-.++..+.+.|++||++++.+
T Consensus 163 ~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 163 YAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp HHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhHHHHHhhcccccceeEEe
Confidence 147889999999999987765
No 247
>KOG3191|consensus
Probab=65.60 E-value=13 Score=29.43 Aligned_cols=76 Identities=22% Similarity=0.180 Sum_probs=44.3
Q ss_pred CCcChHHHHHhhCCCCC-CCCceeEEEcCCCCCCCCCCccceeeecc---------------ccccc--CC----hhHHH
Q psy16312 1 MCDNCESILSQAEPPED-TEVIYEKKFVDEEHLPFAENSVDLLISNL---------------ALHWV--NN----LPGCF 58 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~-~~~~i~f~~~D~~~l~~~~~~FD~Vis~~---------------~l~~~--~d----~~~~l 58 (245)
++|++|..++...+.+. +..++..++.|..+--- .++.|+++-|- .+-|. .| .++.+
T Consensus 73 atDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~-~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll 151 (209)
T KOG3191|consen 73 ATDINPEALEATLETARCNRVHIDVVRTDLLSGLR-NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLL 151 (209)
T ss_pred EecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc-cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHH
Confidence 47899988877554322 12346777777754211 26677666442 22233 12 23556
Q ss_pred HHHHhhhcCCcEEEEEecC
Q psy16312 59 QQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 59 ~~i~r~LkpGG~l~~~~~~ 77 (245)
..+-..|.|.|+|++....
T Consensus 152 ~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 152 PQVPDILSPRGVFYLVALR 170 (209)
T ss_pred hhhhhhcCcCceEEeeehh
Confidence 6666777888888877533
No 248
>KOG1099|consensus
Probab=65.02 E-value=13 Score=30.53 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=41.2
Q ss_pred CceeEEEcCCCCCC--------CCCCccceeeecc-----cccccCC------hhHHHHHHHhhhcCCcEEEEEecCCC
Q psy16312 20 VIYEKKFVDEEHLP--------FAENSVDLLISNL-----ALHWVNN------LPGCFQQVLKCLRQDGVFLASIFGGE 79 (245)
Q Consensus 20 ~~i~f~~~D~~~l~--------~~~~~FD~Vis~~-----~l~~~~d------~~~~l~~i~r~LkpGG~l~~~~~~~~ 79 (245)
+.|.-+++|+.+.. |..+.-|+|+|-. .+|-++. .-.+|.-...+|||||.|+.-.+...
T Consensus 89 ~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 89 EGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred CceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 34666778887643 5556899999854 5665533 12567777899999999987665443
No 249
>KOG2539|consensus
Probab=63.44 E-value=15 Score=33.26 Aligned_cols=75 Identities=21% Similarity=0.158 Sum_probs=45.0
Q ss_pred CCcChHHHHHhhCCCCCCCC-ceeEEEcC--C--CCCCCC-CCccceeeecccccccCChhH---H-HHHHHhhhcCCcE
Q psy16312 1 MCDNCESILSQAEPPEDTEV-IYEKKFVD--E--EHLPFA-ENSVDLLISNLALHWVNNLPG---C-FQQVLKCLRQDGV 70 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~~~-~i~f~~~D--~--~~l~~~-~~~FD~Vis~~~l~~~~d~~~---~-l~~i~r~LkpGG~ 70 (245)
+||.|..|+........++. +-...+.. + .-+|.. ...||+|+|.+.++.+.+... + -.-+....++||.
T Consensus 231 ~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~ 310 (491)
T KOG2539|consen 231 LVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYF 310 (491)
T ss_pred eeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCce
Confidence 47889999988876443210 11111111 1 124443 345999999999999876552 2 2345566778888
Q ss_pred EEEEe
Q psy16312 71 FLASI 75 (245)
Q Consensus 71 l~~~~ 75 (245)
+++..
T Consensus 311 lViIe 315 (491)
T KOG2539|consen 311 LVIIE 315 (491)
T ss_pred EEEEe
Confidence 77654
No 250
>KOG1562|consensus
Probab=63.26 E-value=9.3 Score=32.49 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=45.9
Q ss_pred CcChHHHHHhhCCCCC------CCCceeEEEcCCCCC--CCCCCccceeeecccccccCC----hhHHHHHHHhhhcCCc
Q psy16312 2 CDNCESILSQAEPPED------TEVIYEKKFVDEEHL--PFAENSVDLLISNLALHWVNN----LPGCFQQVLKCLRQDG 69 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~------~~~~i~f~~~D~~~l--~~~~~~FD~Vis~~~l~~~~d----~~~~l~~i~r~LkpGG 69 (245)
+|+....++..++-++ .++++....+|.-.+ ....+.||+|+.-.+=.-.+- ....+.-+.+.|||||
T Consensus 151 ~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dg 230 (337)
T KOG1562|consen 151 CEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDG 230 (337)
T ss_pred ehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCc
Confidence 4555555555555332 247788888887543 133589999996433111110 2356778999999999
Q ss_pred EEEEE
Q psy16312 70 VFLAS 74 (245)
Q Consensus 70 ~l~~~ 74 (245)
+++..
T Consensus 231 v~~~q 235 (337)
T KOG1562|consen 231 VVCTQ 235 (337)
T ss_pred EEEEe
Confidence 98876
No 251
>KOG1499|consensus
Probab=62.75 E-value=5.9 Score=34.29 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=39.1
Q ss_pred ceeEEEcCCCCCCCCCCccceeeecccccccC---ChhHHHHHHHhhhcCCcEEE
Q psy16312 21 IYEKKFVDEEHLPFAENSVDLLISNLALHWVN---NLPGCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 21 ~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~---d~~~~l~~i~r~LkpGG~l~ 72 (245)
-|++..+.++++.++-...|+|+|-++=+|+- =.+.+|-.=-+.|+|||.++
T Consensus 110 ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 110 VITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 48899999998766568999999977665551 24455556668999999875
No 252
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=61.23 E-value=15 Score=33.85 Aligned_cols=45 Identities=13% Similarity=0.035 Sum_probs=25.4
Q ss_pred CcChHHHHHhhCCCCCCC--CceeEEEcCCCCC-----CCCCCccceeeecc
Q psy16312 2 CDNCESILSQAEPPEDTE--VIYEKKFVDEEHL-----PFAENSVDLLISNL 46 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~--~~i~f~~~D~~~l-----~~~~~~FD~Vis~~ 46 (245)
+|+++..+..|+.++... ..+...+.|.... .-..+.||+|++|=
T Consensus 69 ~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 69 ADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNP 120 (524)
T ss_pred echhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccCcccEEEeCC
Confidence 688888888887654321 1233444443221 11125799999863
No 253
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=61.01 E-value=7.3 Score=33.20 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.1
Q ss_pred ChhHHHHHHHhhhcCCcEEEEEecC
Q psy16312 53 NLPGCFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 53 d~~~~l~~i~r~LkpGG~l~~~~~~ 77 (245)
....+|..+..+|+|||++++.+|.
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfH 238 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFH 238 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecC
Confidence 4568899999999999999887654
No 254
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=57.91 E-value=27 Score=33.31 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=33.4
Q ss_pred ceeEEEcCCCC-CCCCCCccceeee-cccccccCC--hhHHHHHHHhhhcCCcEEEE
Q psy16312 21 IYEKKFVDEEH-LPFAENSVDLLIS-NLALHWVNN--LPGCFQQVLKCLRQDGVFLA 73 (245)
Q Consensus 21 ~i~f~~~D~~~-l~~~~~~FD~Vis-~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~ 73 (245)
+++...+|+.+ ++--...||+++. .++-.--++ -..+++.++++++|||.++-
T Consensus 148 ~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 148 TLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 45567788864 3322256999985 222211111 14789999999999999873
No 255
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=57.74 E-value=8.4 Score=33.01 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.1
Q ss_pred ChhHHHHHHHhhhcCCcEEEEEecC
Q psy16312 53 NLPGCFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 53 d~~~~l~~i~r~LkpGG~l~~~~~~ 77 (245)
....+|..+..+|+|||++++.+|.
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEec
Confidence 3568899999999999999888754
No 256
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=57.32 E-value=5.8 Score=34.01 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=45.7
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEE
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~ 72 (245)
+|+|..-|.....-+. .+++.+-..+..+...-...|+||..-.+---..|..+.+++...+|||..++
T Consensus 197 ld~n~~rl~~ldd~f~--~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 197 LDLNIDRLRQLDDLFG--GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EecCHHHHhhhhHhhC--ceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 3455444444433333 24555554444443222478999988777777889999999999999999876
No 257
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=55.61 E-value=34 Score=26.40 Aligned_cols=50 Identities=26% Similarity=0.395 Sum_probs=35.5
Q ss_pred EcCCCCCC----CCCCccceeeecccccccC----C-----------hhHHHHHHHhhhcCCcEEEEEecC
Q psy16312 26 FVDEEHLP----FAENSVDLLISNLALHWVN----N-----------LPGCFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 26 ~~D~~~l~----~~~~~FD~Vis~~~l~~~~----d-----------~~~~l~~i~r~LkpGG~l~~~~~~ 77 (245)
-.|+..+. ...+.||.|+-|+- |.. + ...+++.+..+|+++|.+.++...
T Consensus 59 ~VDat~l~~~~~~~~~~FDrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 59 GVDATKLHKHFRLKNQRFDRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred CCCCCcccccccccCCcCCEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 35776664 34688999998753 332 0 225688999999999999998643
No 258
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=53.85 E-value=7.5 Score=27.10 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=34.6
Q ss_pred CceeEEEcCCCCC-C-CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEE
Q psy16312 20 VIYEKKFVDEEHL-P-FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 20 ~~i~f~~~D~~~l-~-~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
.+++++.++..+. + +..++||+|+--. -|..+.....+..+...|+|||.+++.
T Consensus 49 ~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 49 DRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp BTEEEEES-THHHHHHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CeEEEEEcCcHHHHHHcCCCCEEEEEECC-CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4688999988643 2 2247899998533 222234456788899999999999876
No 259
>PRK04148 hypothetical protein; Provisional
Probab=53.25 E-value=32 Score=25.62 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=44.0
Q ss_pred CCcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCC-CCccceeeecccccccCChhHHHHHHHhhhcCCc-EEEEEecCC
Q psy16312 1 MCDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFA-ENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDG-VFLASIFGG 78 (245)
Q Consensus 1 ~iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~-~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG-~l~~~~~~~ 78 (245)
.+|+++..++.|+.. .++++++|+.+-++. ...+|+|.|.. -|.....-+.++-+.=| -+++..++.
T Consensus 44 aIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~y~~a~liysir------pp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 44 VIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEIYKNAKLIYSIR------PPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred EEECCHHHHHHHHHh-----CCeEEECcCCCCCHHHHhcCCEEEEeC------CCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 379999999888655 367899999876654 46799999854 23344444444444333 466665444
No 260
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=52.97 E-value=34 Score=26.23 Aligned_cols=47 Identities=21% Similarity=0.380 Sum_probs=32.2
Q ss_pred ceeEEEcCCCCCCCC-CCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 21 IYEKKFVDEEHLPFA-ENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 21 ~i~f~~~D~~~l~~~-~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
..+.+.+|-...+.. .+.+|++++. |+ ..+......|+|||.+++..
T Consensus 39 ~~~vris~~~~~~~~~~~~~Dilv~l-------~~-~~~~~~~~~l~~~g~vi~ns 86 (173)
T PF01558_consen 39 VSHVRISDEPIIPSPPVGEADILVAL-------DP-EALERHLKGLKPGGVVIINS 86 (173)
T ss_dssp EEEEEEESS--SSSS-TSSESEEEES-------SH-HHHHHCGTTCETTEEEEEET
T ss_pred EEEEEEecCcCccCcccCCCCEEEEc-------CH-HHHHHHhcCcCcCeEEEEEC
Confidence 355566664233333 3799999986 44 45558888899999999986
No 261
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=52.75 E-value=1.5 Score=34.48 Aligned_cols=73 Identities=10% Similarity=0.094 Sum_probs=45.6
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCC-CC---CCCCccceeeecccccccCC--hhHHHHHHH--hhhcCCcE
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEH-LP---FAENSVDLLISNLALHWVNN--LPGCFQQVL--KCLRQDGV 70 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~-l~---~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~--r~LkpGG~ 70 (245)
||.++..+...+++... ..++..++.|+.. ++ .....||+|++-=- +-.+ ...++..+. .+|+++|.
T Consensus 71 VE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPP--Y~~~~~~~~~l~~l~~~~~l~~~~~ 148 (183)
T PF03602_consen 71 VEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPP--YAKGLYYEELLELLAENNLLNEDGL 148 (183)
T ss_dssp EES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--S--TTSCHHHHHHHHHHHHTTSEEEEEE
T ss_pred EECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCC--cccchHHHHHHHHHHHCCCCCCCEE
Confidence 57777777777775431 2357788888643 32 13578999987321 1112 256777776 78999999
Q ss_pred EEEEec
Q psy16312 71 FLASIF 76 (245)
Q Consensus 71 l~~~~~ 76 (245)
+++...
T Consensus 149 ii~E~~ 154 (183)
T PF03602_consen 149 IIIEHS 154 (183)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 998863
No 262
>KOG0820|consensus
Probab=51.26 E-value=9.2 Score=32.17 Aligned_cols=46 Identities=13% Similarity=0.025 Sum_probs=35.7
Q ss_pred CcChHHHHHhhCCCCCCC---CceeEEEcCCCCCCCCCCccceeeeccccc
Q psy16312 2 CDNCESILSQAEPPEDTE---VIYEKKFVDEEHLPFAENSVDLLISNLALH 49 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~---~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~ 49 (245)
+++.+.|++...++..+. ..+++.++|....+++ .||.+|+|.-.+
T Consensus 86 ~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNlPyq 134 (315)
T KOG0820|consen 86 VEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNLPYQ 134 (315)
T ss_pred EecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeeccCCcc
Confidence 577889998888876542 4688999999888775 799999976443
No 263
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=47.66 E-value=16 Score=28.89 Aligned_cols=74 Identities=7% Similarity=-0.051 Sum_probs=44.1
Q ss_pred CcChHHHHHhhCCCCC---CCCceeEEEcCCCCC-C-CC-CCccceeeecccccc-cCChhHHHHH--HHhhhcCCcEEE
Q psy16312 2 CDNCESILSQAEPPED---TEVIYEKKFVDEEHL-P-FA-ENSVDLLISNLALHW-VNNLPGCFQQ--VLKCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~---~~~~i~f~~~D~~~l-~-~~-~~~FD~Vis~~~l~~-~~d~~~~l~~--i~r~LkpGG~l~ 72 (245)
||.+...+...+++.. ...++.++..|+... + .. .+.||+|+.-=-.++ +-+....+.. -..+|+|+|.++
T Consensus 72 vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv 151 (187)
T COG0742 72 VEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIV 151 (187)
T ss_pred EecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEE
Confidence 5666666666666533 125678888888743 1 22 135999987322221 1122333333 457799999999
Q ss_pred EEe
Q psy16312 73 ASI 75 (245)
Q Consensus 73 ~~~ 75 (245)
+..
T Consensus 152 ~E~ 154 (187)
T COG0742 152 VEH 154 (187)
T ss_pred EEe
Confidence 986
No 264
>KOG2730|consensus
Probab=47.57 E-value=10 Score=30.95 Aligned_cols=43 Identities=12% Similarity=-0.126 Sum_probs=30.4
Q ss_pred CcChHHHHHhhCCCCCC---CCceeEEEcCCCCC----CCCCCccceeee
Q psy16312 2 CDNCESILSQAEPPEDT---EVIYEKKFVDEEHL----PFAENSVDLLIS 44 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~---~~~i~f~~~D~~~l----~~~~~~FD~Vis 44 (245)
||++|--|+.|+.++.- ..+|+|.++|..++ .+....+|+|+.
T Consensus 122 IdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 122 IDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred EeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 78999999999988752 34799999998764 333334555543
No 265
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.33 E-value=1.5e+02 Score=25.34 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=59.4
Q ss_pred ceeEEEcCCCCCC---------CCCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEEecCCCcHHH-HHHHH
Q psy16312 21 IYEKKFVDEEHLP---------FAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASIFGGETLYE-LRSAV 88 (245)
Q Consensus 21 ~i~f~~~D~~~l~---------~~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~~~~~~~~~~-~~~~~ 88 (245)
..+++..|+++-. |..+.--++++-.++++++. ..+++..|..++.||-.+++....+..... .....
T Consensus 144 ~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~ 223 (297)
T COG3315 144 HRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPA 223 (297)
T ss_pred eEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchh
Confidence 5888999998432 22344457889999999964 447899999999999888887531211111 00000
Q ss_pred HHHHHHhcC-CCCCcccCCCCHHHHHHHHHhCCCee
Q psy16312 89 HLAEMERRG-GVASHISPFTQIRDVGSLLTRAGFNM 123 (245)
Q Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGF~~ 123 (245)
....+.... .............++...+.+.||..
T Consensus 224 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~ 259 (297)
T COG3315 224 ARKTMRGEDLDRGELVYFGDDPAEIETWLAERGWRS 259 (297)
T ss_pred hhhhccccccccccceeccCCHHHHHHHHHhcCEEE
Confidence 000000000 00011111234788999999999875
No 266
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=46.77 E-value=92 Score=25.05 Aligned_cols=73 Identities=14% Similarity=-0.028 Sum_probs=46.2
Q ss_pred cChHHHHHhhCCCCC-CCCceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEE-EEEecCCC
Q psy16312 3 DNCESILSQAEPPED-TEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVF-LASIFGGE 79 (245)
Q Consensus 3 D~S~~ml~~A~~~~~-~~~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l-~~~~~~~~ 79 (245)
|+.|...+..+-+.+ +..++.|...|.-. .+..||+|++..++..-+-..+++. +.+.|+..|.. ++-.++..
T Consensus 109 d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 109 DIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred CCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 455555555555444 23567777777655 4578999999887765444556666 78888877754 44444433
No 267
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=46.69 E-value=46 Score=29.25 Aligned_cols=49 Identities=22% Similarity=0.118 Sum_probs=32.3
Q ss_pred CCCCCCCCCCccceeeecccccccCCh---hHHHHHHHhhhcCCcEEEEEecC
Q psy16312 28 DEEHLPFAENSVDLLISNLALHWVNNL---PGCFQQVLKCLRQDGVFLASIFG 77 (245)
Q Consensus 28 D~~~l~~~~~~FD~Vis~~~l~~~~d~---~~~l~~i~r~LkpGG~l~~~~~~ 77 (245)
|-.++|.. ..|++|+...-|-...+. ...++.+..++.|||.|++...|
T Consensus 176 dRl~lp~a-d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 176 DRLSLPAA-DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hccCCCcc-ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 33344443 678888775555444332 24788899999999999887643
No 268
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=45.73 E-value=25 Score=30.02 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=46.5
Q ss_pred ceeEEEcCCCCCCC--CCCccceeeecccccccCC--hhHHHHHHHhhhcCCcEEEEEec
Q psy16312 21 IYEKKFVDEEHLPF--AENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 21 ~i~f~~~D~~~l~~--~~~~FD~Vis~~~l~~~~d--~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
++..+.+|+.++-- +-++.|.++...+-.|++| ...++.++.+-+.||.+++|-+.
T Consensus 308 RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRta 367 (414)
T COG5379 308 RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTA 367 (414)
T ss_pred heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecc
Confidence 57888888876532 4578999999999999986 56899999999999999998753
No 269
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=45.57 E-value=1.1e+02 Score=23.62 Aligned_cols=53 Identities=21% Similarity=0.363 Sum_probs=26.4
Q ss_pred HHHHHHHhhhcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHhCCCeee
Q psy16312 56 GCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNML 124 (245)
Q Consensus 56 ~~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~ 124 (245)
.+++-+++.|.|||+++++...+. +....+. .+.++ ....+...|..+||+..
T Consensus 67 ~l~~~~~~~l~pg~~lfVeY~~D~---eT~~~L~-------~G~pp------~~TrLG~~Ll~~GFtwf 119 (170)
T PF06557_consen 67 ELYKLFSRYLEPGGRLFVEYVEDR---ETRRQLQ-------RGVPP------AETRLGFSLLKAGFTWF 119 (170)
T ss_dssp HHHHHHHTT----SEEEEE-TT-H---HHHHHHH-------TT--G------GGSHHHHHHHTTT--EE
T ss_pred HHHHHHHHHhhhcCeEEEEEecCH---HHHHHHH-------cCCCc------ccchhHHHHHhCCcEEE
Confidence 678889999999999999964431 2111111 11111 12356778889999863
No 270
>KOG1122|consensus
Probab=44.22 E-value=38 Score=30.39 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=36.6
Q ss_pred CceeEEEcCCCCCC---CCCCccceee----ecc--------cccccCC----------hhHHHHHHHhhhcCCcEEEEE
Q psy16312 20 VIYEKKFVDEEHLP---FAENSVDLLI----SNL--------ALHWVNN----------LPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 20 ~~i~f~~~D~~~l~---~~~~~FD~Vi----s~~--------~l~~~~d----------~~~~l~~i~r~LkpGG~l~~~ 74 (245)
.+.-....|..++| ++ ++||-|. |+. ++-|... ..++|-.....++|||+|+-+
T Consensus 292 ~ntiv~n~D~~ef~~~~~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 292 TNTIVSNYDGREFPEKEFP-GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred CceEEEccCcccccccccC-cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEE
Confidence 45556777887766 44 4899987 333 1222221 235677888999999999887
Q ss_pred ec
Q psy16312 75 IF 76 (245)
Q Consensus 75 ~~ 76 (245)
+.
T Consensus 371 TC 372 (460)
T KOG1122|consen 371 TC 372 (460)
T ss_pred ee
Confidence 53
No 271
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=42.73 E-value=44 Score=26.37 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=23.2
Q ss_pred CccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 37 NSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 37 ~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+..|+|++.. +.. +......|||||.+++..
T Consensus 67 ~~~D~lva~d-------~~~-~~~~~~~lk~gg~ii~n~ 97 (197)
T PRK06853 67 GKADLLLAFE-------PLE-ALRYLPYLKKGGKVVVNT 97 (197)
T ss_pred CCCCEEEEeC-------HHH-HHHHHHhcCCCcEEEEEC
Confidence 4799999864 333 446667899999999874
No 272
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=42.61 E-value=19 Score=30.03 Aligned_cols=45 Identities=9% Similarity=-0.090 Sum_probs=36.4
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCCC-ccceeeecc
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAEN-SVDLLISNL 46 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~~-~FD~Vis~~ 46 (245)
+++.+.|++..+++.....|++.+.+|+...+++.- .++.|++|.
T Consensus 58 iEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 58 IEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANL 103 (259)
T ss_pred EEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcC
Confidence 577888999988887655789999999999888632 688898874
No 273
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=42.08 E-value=23 Score=31.09 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=47.9
Q ss_pred CcChHHHHHhhCCCCCC--CCceeEEEcCCCCCCCC-CCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPEDT--EVIYEKKFVDEEHLPFA-ENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~--~~~i~f~~~D~~~l~~~-~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
-|+||..++..+.+... ..+......|+..+=.. ...||+|= +.=+-.|...+....+.++.||.+.++.
T Consensus 82 NDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID----iDPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 82 NDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID----IDPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred ccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe----cCCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 48999999999886542 23445555666554222 36788773 2222357789999999999999998875
No 274
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=41.29 E-value=19 Score=29.84 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=34.7
Q ss_pred CceeEEEcCCCC-CCC-CCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCC
Q psy16312 20 VIYEKKFVDEEH-LPF-AENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGG 78 (245)
Q Consensus 20 ~~i~f~~~D~~~-l~~-~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~ 78 (245)
.++.++.+.+.+ +|- +...+-++ ..=..|...-..+|..++..|.|||.+++..++.
T Consensus 157 ~~v~~vkG~F~dTLp~~p~~~IAll--~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 157 DNVRFVKGWFPDTLPDAPIERIALL--HLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TTEEEEES-HHHHCCC-TT--EEEE--EE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred ccEEEECCcchhhhccCCCccEEEE--EEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 579999999854 552 22333222 2222222234478999999999999999997654
No 275
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=39.19 E-value=38 Score=29.04 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=23.5
Q ss_pred CccceeeecccccccCChhHHHHHHHhhhcCCcEEEEE
Q psy16312 37 NSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 37 ~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
+.||+|+-... . ...+....++|+|||+++..
T Consensus 234 g~~D~vid~~G-----~-~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 234 GYFDVSFEVSG-----H-PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CCCCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEE
Confidence 35898876433 1 34678888999999998765
No 276
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=38.81 E-value=1.2e+02 Score=21.44 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=22.4
Q ss_pred hhHHHHHHHhhhcCCcEEEEEecCCCcHHHHHH
Q psy16312 54 LPGCFQQVLKCLRQDGVFLASIFGGETLYELRS 86 (245)
Q Consensus 54 ~~~~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~ 86 (245)
.+..++++...|+||...+|..........+..
T Consensus 41 ~d~~~~ev~~~L~~GssAl~~lv~~~~~d~v~~ 73 (102)
T PF06897_consen 41 DDEFIKEVGEALKPGSSALFLLVDEATEDKVDA 73 (102)
T ss_pred CHHHHHHHHhhcCCCceEEEEEeccCCHHHHHH
Confidence 457899999999999876665443434333333
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=36.25 E-value=51 Score=28.70 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=39.9
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEc-CCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFV-DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~-D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+|.|++=++.|++--+. .++.. |.+..+.-.+.||+|+.... ...+....+.|++||++++.-
T Consensus 196 ~~~~~~K~e~a~~lGAd----~~i~~~~~~~~~~~~~~~d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 196 ITRSEEKLELAKKLGAD----HVINSSDSDALEAVKEIADAIIDTVG-------PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EeCChHHHHHHHHhCCc----EEEEcCCchhhHHhHhhCcEEEECCC-------hhhHHHHHHHHhcCCEEEEEC
Confidence 57777777777665331 23332 22222211234999987532 567888899999999988764
No 278
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=35.47 E-value=91 Score=24.22 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=22.8
Q ss_pred CCccceeeecccccccCChhHHHH-HHHhhhcCCcEEEEEe
Q psy16312 36 ENSVDLLISNLALHWVNNLPGCFQ-QVLKCLRQDGVFLASI 75 (245)
Q Consensus 36 ~~~FD~Vis~~~l~~~~d~~~~l~-~i~r~LkpGG~l~~~~ 75 (245)
....|++++.. +..+-. ++..-|+|||.+++..
T Consensus 64 ~~~~D~lva~~-------~~~~~~~~~~~~l~~gg~vi~ns 97 (181)
T PRK08534 64 IYEPDYVIVQD-------PTLLDSVDVTSGLKKDGIIIINT 97 (181)
T ss_pred CCCCCEEEEcC-------HHHhcchhHhcCcCCCcEEEEEC
Confidence 35789998853 333322 4567799999999884
No 279
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=35.38 E-value=1.2e+02 Score=23.78 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 36 ENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 36 ~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
.+..|+++|. |+... ......|+|||.+++.+
T Consensus 65 ~~~~D~lva~-------d~~~~-~~~~~~l~~gg~ii~ns 96 (197)
T PRK06274 65 EGQADLLLAL-------EPAEV-ARNLHFLKKGGKIIVNA 96 (197)
T ss_pred CCCCCEEEEc-------CHHHH-HHHHhhcCCCcEEEEEC
Confidence 4789999986 34443 45567899999998874
No 280
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=35.33 E-value=15 Score=32.54 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=46.7
Q ss_pred CcChHHHHHhhCCCCC--C-CC-ceeEEEcCCCCCC-CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 2 CDNCESILSQAEPPED--T-EV-IYEKKFVDEEHLP-FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~-~~-~i~f~~~D~~~l~-~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
-|+|+..++..+++.. + .. .++..+.|+..+= .....||+|=. .=+-.|..+|....+.++.||.+.++.
T Consensus 80 NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl----DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 80 NDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL----DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe----CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 3899999998888642 2 12 4778888887642 24578999942 222357789999999999999999885
No 281
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=35.29 E-value=1.3e+02 Score=23.15 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=22.3
Q ss_pred CccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 37 NSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 37 ~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
...|++++. |+..+ .....-|+|||.+++..
T Consensus 66 ~~~D~lval-------~~~~~-~~~~~~l~~~g~vi~n~ 96 (177)
T PRK08537 66 ISPDILVAM-------SQEAY-DKYLDDLKEGGTVIVDP 96 (177)
T ss_pred CCCCEEEEe-------CHHHH-HHHHhccCCCeEEEEEC
Confidence 468988885 33333 35567899999999874
No 282
>KOG0822|consensus
Probab=34.96 E-value=40 Score=31.25 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=41.1
Q ss_pred CceeEEEcCCCCCCCCCCccceeeecccccccCC---hhHHHHHHHhhhcCCcEEEE
Q psy16312 20 VIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN---LPGCFQQVLKCLRQDGVFLA 73 (245)
Q Consensus 20 ~~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d---~~~~l~~i~r~LkpGG~l~~ 73 (245)
.+|+.+-.||..++.+....|++||-. |.-+.| -...|..+-+.|||.|..+=
T Consensus 421 ~~Vtii~~DMR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 421 NRVTIISSDMRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred CeeEEEeccccccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 568999999999986568899998743 333434 23789999999999998763
No 283
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=34.89 E-value=1.3e+02 Score=22.08 Aligned_cols=59 Identities=14% Similarity=0.023 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCeeeEEEEEeEEEeCCCHHHHHHHHhccccccccccCCCCCCHHHHHHHHHHHHH
Q psy16312 111 DVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMGESNACVNRSLHFPLELQYASAAIYEK 175 (245)
Q Consensus 111 ~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (245)
-+...|+.+||+++.... +.+++++.+.....++...-.........+...++.+.+++
T Consensus 21 iv~~~l~~~GfeVi~lg~------~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 21 VIATAYADLGFDVDVGPL------FQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDK 79 (132)
T ss_pred HHHHHHHhCCcEEEECCC------CCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHh
Confidence 356677788888754442 35667777776665543322211122234445555555554
No 284
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=34.46 E-value=6.6 Score=30.33 Aligned_cols=44 Identities=16% Similarity=0.008 Sum_probs=27.7
Q ss_pred CcChHHHHHhhCCCCC---CCCceeEEEcCCCCCC--CCCCc-cceeeec
Q psy16312 2 CDNCESILSQAEPPED---TEVIYEKKFVDEEHLP--FAENS-VDLLISN 45 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~---~~~~i~f~~~D~~~l~--~~~~~-FD~Vis~ 45 (245)
||+++..++.|+.++. -..+|+|+++|..++. +.... ||+|+++
T Consensus 27 idid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 27 IDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 7899999999988654 2358999999997642 22122 7888764
No 285
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=34.04 E-value=70 Score=22.02 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=22.5
Q ss_pred CccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEec
Q psy16312 37 NSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIF 76 (245)
Q Consensus 37 ~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~ 76 (245)
.+||++|.... +-+ ...+|..+...++-||.+++.++
T Consensus 10 ~e~~~~i~d~~-~g~--~pnal~a~~gtv~gGGllill~p 46 (92)
T PF08351_consen 10 QEFDLLIFDAF-EGF--DPNALAALAGTVRGGGLLILLLP 46 (92)
T ss_dssp --BSSEEEE-S-S-----HHHHHHHHTTB-TT-EEEEEES
T ss_pred CccCEEEEEcc-CCC--CHHHHHHHhcceecCeEEEEEcC
Confidence 57888886431 111 24678889999999999988864
No 286
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=33.22 E-value=77 Score=19.08 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCeeeEEEEEeEEEeCCC
Q psy16312 110 RDVGSLLTRAGFNMLTIDVDEIVIHYPS 137 (245)
Q Consensus 110 ~~~~~~l~~aGF~~~~~~~~~~~~~~~~ 137 (245)
.++.++|+.+||+.....-....+..+.
T Consensus 2 ~el~k~L~~~G~~~~r~~GSH~~~~~~~ 29 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQKGSHHIFRHPG 29 (56)
T ss_dssp HHHHHHHHHTT-EEEEEETTEEEEE-TT
T ss_pred hHHHHHHHHCCCEEecCCCCEEEEEeCC
Confidence 4678899999999876544455555544
No 287
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=31.26 E-value=60 Score=26.09 Aligned_cols=55 Identities=7% Similarity=-0.123 Sum_probs=31.4
Q ss_pred CceeEEEcCCCCCC----CC----CCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 20 VIYEKKFVDEEHLP----FA----ENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 20 ~~i~f~~~D~~~l~----~~----~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
++|+++++|..+.. .. ...-.+|+ --+=|.-.+.-+.|+....+|.||+++++..
T Consensus 85 ~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 85 PRITFIQGDSIDPEIVDQVRELASPPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp TTEEEEES-SSSTHHHHTSGSS----SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CceEEEECCCCCHHHHHHHHHhhccCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 68999999987642 11 12333444 3333444566788999999999999998873
No 288
>KOG2915|consensus
Probab=31.05 E-value=1.2e+02 Score=25.76 Aligned_cols=50 Identities=16% Similarity=-0.001 Sum_probs=38.5
Q ss_pred CceeEEEcCCCCCCCC--CCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEE
Q psy16312 20 VIYEKKFVDEEHLPFA--ENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 20 ~~i~f~~~D~~~l~~~--~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
.++++.+-|+....|. +..+|.|+. -++.|..++..++.+||-+|.-+.+
T Consensus 157 ~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 157 DNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cceEEEEeecccCCccccccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEe
Confidence 6899999999876544 577888875 3567888999999999988854433
No 289
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=30.71 E-value=81 Score=24.05 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=22.3
Q ss_pred CccceeeecccccccCChh---HHHHHHHhhhcCCcEEEEEe
Q psy16312 37 NSVDLLISNLALHWVNNLP---GCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 37 ~~FD~Vis~~~l~~~~d~~---~~l~~i~r~LkpGG~l~~~~ 75 (245)
..||.||- .|-.... -.|..+...|++||.+++.-
T Consensus 68 ~~~D~vvl----y~PKaK~e~~~lL~~l~~~L~~g~~i~vVG 105 (155)
T PF08468_consen 68 QDFDTVVL----YWPKAKAEAQYLLANLLSHLPPGTEIFVVG 105 (155)
T ss_dssp TT-SEEEE----E--SSHHHHHHHHHHHHTTS-TT-EEEEEE
T ss_pred cCCCEEEE----EccCcHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 56898874 4555544 35889999999999988774
No 290
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=30.52 E-value=3.2e+02 Score=22.85 Aligned_cols=104 Identities=19% Similarity=0.167 Sum_probs=44.3
Q ss_pred ccceeeecccccccCChhHHHHHHHhhhc-CCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCCCCcccCCCCH----HHH
Q psy16312 38 SVDLLISNLALHWVNNLPGCFQQVLKCLR-QDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQI----RDV 112 (245)
Q Consensus 38 ~FD~Vis~~~l~~~~d~~~~l~~i~r~Lk-pGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 112 (245)
..|+|+...++ .-+.++.|+|+ |+|.+++...+..--..+..... . +............-++. +++
T Consensus 7 ~m~lVlf~~ai-------~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa-~-i~~~~~~~i~~~~~y~~~~f~~dL 77 (268)
T PF12780_consen 7 KMNLVLFDEAI-------EHIARISRVLSQPRGHALLVGVGGSGRQSLARLAA-F-ICGYEVFQIEITKGYSIKDFKEDL 77 (268)
T ss_dssp -------HHHH-------HHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHH-H-HTTEEEE-TTTSTTTHHHHHHHHH
T ss_pred ccceeeHHHHH-------HHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHH-H-HhccceEEEEeeCCcCHHHHHHHH
Confidence 35666655444 44577888885 89987766443211111111111 0 11111111112222333 456
Q ss_pred HHHHHhCCCeeeE--EEEEeEEEeCCCHHHHHHHHhcccc
Q psy16312 113 GSLLTRAGFNMLT--IDVDEIVIHYPSMFELMWDLKGMGE 150 (245)
Q Consensus 113 ~~~l~~aGF~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~ 150 (245)
+.++..+|.+... +-..+..+..+...+.+..+-..|.
T Consensus 78 k~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGe 117 (268)
T PF12780_consen 78 KKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGE 117 (268)
T ss_dssp HHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS
T ss_pred HHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCC
Confidence 6777888987532 2222223333444566666666664
No 291
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.50 E-value=2.2e+02 Score=21.11 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCeeeEEEEEeEEEeCCCHHHHHHHHhccccccccccCCCCCCHHHHHHHHHHHHH
Q psy16312 111 DVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMGESNACVNRSLHFPLELQYASAAIYEK 175 (245)
Q Consensus 111 ~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (245)
-+..+|+++||+++..-. ..+++++++......+.......-...+...+.++.+.+++
T Consensus 20 iv~~~l~~~GfeVi~LG~------~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~ 78 (134)
T TIGR01501 20 ILDHAFTNAGFNVVNLGV------LSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDE 78 (134)
T ss_pred HHHHHHHHCCCEEEECCC------CCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHH
Confidence 345677778887754442 34566777666554432211111112233445555555554
No 292
>PRK10556 hypothetical protein; Provisional
Probab=29.44 E-value=80 Score=22.05 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=17.7
Q ss_pred CHHHHHHHHHhCCCeeeEEEEE
Q psy16312 108 QIRDVGSLLTRAGFNMLTIDVD 129 (245)
Q Consensus 108 ~~~~~~~~l~~aGF~~~~~~~~ 129 (245)
.++++.+.|+++||+...+...
T Consensus 4 RPDEVArVLe~aGF~~D~vt~~ 25 (111)
T PRK10556 4 RPDEVARVLEKAGFTVDVVTQK 25 (111)
T ss_pred ChHHHHHHHHhcCceEEEeech
Confidence 4788999999999998766543
No 293
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=29.01 E-value=2e+02 Score=22.46 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=29.0
Q ss_pred eeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 22 YEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 22 i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
.+.+.+|+.+.-.+.+..|++++. |+..+. +....|+|||.+++..
T Consensus 48 s~vris~i~sp~~~~~~~Dilval-------d~~~~~-~~~~~l~~~g~ii~n~ 93 (189)
T TIGR03334 48 NHIRIGEVYGSMIPEGGADLLLAF-------EPLEAL-RYLPYLSEGGEVILNT 93 (189)
T ss_pred EEEEEccccCCccCCCCCCEEEEe-------CHHHHH-HHHHhcCCCcEEEEeC
Confidence 455566622211234788999986 444444 4556799999988774
No 294
>KOG2198|consensus
Probab=27.90 E-value=69 Score=28.18 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=19.9
Q ss_pred HHHHHHHhhhcCCcEEEEEecCCCc
Q psy16312 56 GCFQQVLKCLRQDGVFLASIFGGET 80 (245)
Q Consensus 56 ~~l~~i~r~LkpGG~l~~~~~~~~~ 80 (245)
..|.+-.++||+||+++-++..-++
T Consensus 277 ~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 277 RILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeccCCCc
Confidence 4688889999999999988754433
No 295
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=27.89 E-value=63 Score=27.46 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=40.4
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCC-CCCC-CCccceeeecccccccCChhHHHHHHH-------hhhcCC--
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEH-LPFA-ENSVDLLISNLALHWVNNLPGCFQQVL-------KCLRQD-- 68 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~-l~~~-~~~FD~Vis~~~l~~~~d~~~~l~~i~-------r~LkpG-- 68 (245)
+|+.+..|..-.+-+. +..|++..+.|+.. +|-. .+.||+++. ||...+..+. ..||--
T Consensus 181 vDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT--------DPpeTi~alk~FlgRGI~tLkg~~~ 252 (354)
T COG1568 181 VDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT--------DPPETIKALKLFLGRGIATLKGEGC 252 (354)
T ss_pred EechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec--------CchhhHHHHHHHHhccHHHhcCCCc
Confidence 6788877766654332 23568888999875 4411 378998864 6665444443 344433
Q ss_pred -cEEEEEe
Q psy16312 69 -GVFLASI 75 (245)
Q Consensus 69 -G~l~~~~ 75 (245)
|+|.++.
T Consensus 253 aGyfgiT~ 260 (354)
T COG1568 253 AGYFGITR 260 (354)
T ss_pred cceEeeee
Confidence 6677764
No 296
>KOG0024|consensus
Probab=27.31 E-value=1.5e+02 Score=25.86 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=43.6
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCC---------CCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEE
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLP---------FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFL 72 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~---------~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~ 72 (245)
+|+++.-|+.|++ ++. ..........+.+ +....||+++.-..+ +..++.....||+||.++
T Consensus 200 ~d~~~~Rle~Ak~-~Ga--~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 200 TDLVANRLELAKK-FGA--TVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVV 270 (354)
T ss_pred eecCHHHHHHHHH-hCC--eEEeeccccccHHHHHHHHHhhccccCCCeEEEccCc------hHHHHHHHHHhccCCEEE
Confidence 6899999999988 542 1111111111111 223458888876554 456777789999999988
Q ss_pred EEecCCC
Q psy16312 73 ASIFGGE 79 (245)
Q Consensus 73 ~~~~~~~ 79 (245)
+..++..
T Consensus 271 lvg~g~~ 277 (354)
T KOG0024|consen 271 LVGMGAE 277 (354)
T ss_pred EeccCCC
Confidence 7776653
No 297
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=26.66 E-value=1e+02 Score=21.80 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=16.1
Q ss_pred CHHHHHHHHHhCCCeeeEEEE
Q psy16312 108 QIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 108 ~~~~~~~~l~~aGF~~~~~~~ 128 (245)
.++++.+.|+.+||+...+..
T Consensus 4 rpdeva~vle~~gf~~d~v~~ 24 (111)
T PF09400_consen 4 RPDEVARVLEKAGFERDYVTD 24 (111)
T ss_dssp -HHHHHHHHHHTT-EEEEEET
T ss_pred ChHHHHHHHHhcCceEEEeec
Confidence 478899999999999876663
No 298
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=26.62 E-value=1.1e+02 Score=23.87 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=21.8
Q ss_pred Cccceeeeccc-cccc---CChhHHHHHHHhhhcCCcEEEEE
Q psy16312 37 NSVDLLISNLA-LHWV---NNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 37 ~~FD~Vis~~~-l~~~---~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
..||+||...+ ...+ .-....++.+++..+.||-|++.
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmi 107 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMI 107 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEE
Confidence 58999986442 1111 11345578888888888877766
No 299
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=26.54 E-value=1.2e+02 Score=26.27 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=40.1
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCC------CCCCC-CccceeeecccccccCChhHHHHHHHhhhcCCcEEEEE
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEH------LPFAE-NSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~------l~~~~-~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
+|.++.-++.|++..+. +...-..++ +.... ..||+|+=... ...++..+.++++|||.+.+.
T Consensus 199 ~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 199 VDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVVIEAVG------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred eCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999885442 111111111 11222 36999985544 245899999999999987655
No 300
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=26.10 E-value=1.9e+02 Score=18.66 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhCCCeeeEEEEEeEEEeCCC
Q psy16312 107 TQIRDVGSLLTRAGFNMLTIDVDEIVIHYPS 137 (245)
Q Consensus 107 ~~~~~~~~~l~~aGF~~~~~~~~~~~~~~~~ 137 (245)
....++.++|+..||..+...-....+.+++
T Consensus 7 ~~~ke~ik~Le~~Gf~~vrqkGSH~q~kHp~ 37 (66)
T COG1724 7 MKAKEVIKALEKDGFQLVRQKGSHRQYKHPD 37 (66)
T ss_pred CCHHHHHHHHHhCCcEEEEeecceeEEEcCC
Confidence 3567889999999999987776666666665
No 301
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=25.15 E-value=43 Score=27.77 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=41.9
Q ss_pred CcChHHHHHhhCCCCCCCCceeEEEcCCCCCCCCC---CccceeeecccccccCChhHHHHHHHhhhcC
Q psy16312 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAE---NSVDLLISNLALHWVNNLPGCFQQVLKCLRQ 67 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~~~~~i~f~~~D~~~l~~~~---~~FD~Vis~~~l~~~~d~~~~l~~i~r~Lkp 67 (245)
+|+++.+++..++++...++++++.+|+..+.... +....|++|.-. .+ -...+.++...-+.
T Consensus 58 vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 58 VEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp EESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred ecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 57788888888887665578999999999987653 355677776443 11 23566666664344
No 302
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=24.85 E-value=98 Score=28.63 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=28.2
Q ss_pred CccceeeecccccccCChhHHHHHHHhhhcCCcEEEEE
Q psy16312 37 NSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 37 ~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
..+|+||.......-+.|....+++.+.+||||+++..
T Consensus 247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 36999998766544334544569999999999997754
No 303
>PRK08441 oorC 2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed
Probab=24.71 E-value=2.3e+02 Score=22.06 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=22.4
Q ss_pred CccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 37 NSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 37 ~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+..|++++. |+... .....-|+|||.+++..
T Consensus 67 ~~~D~lval-------~~~~~-~~~~~~l~~gg~ii~n~ 97 (183)
T PRK08441 67 GEIDFMLST-------AQISY-NQFKSGVKEGGIIVVEP 97 (183)
T ss_pred CCCCEEEEC-------CHHHH-HHHHhhcCCCeEEEEcC
Confidence 678999963 44443 45566799999998764
No 304
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=24.39 E-value=2.4e+02 Score=21.98 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=23.3
Q ss_pred CCCccceeeecccccccCChhHHHH-HHHhhhcCCcEEEEEe
Q psy16312 35 AENSVDLLISNLALHWVNNLPGCFQ-QVLKCLRQDGVFLASI 75 (245)
Q Consensus 35 ~~~~FD~Vis~~~l~~~~d~~~~l~-~i~r~LkpGG~l~~~~ 75 (245)
..+.+|+++|.. +...-. +....|+|||.+++..
T Consensus 63 ~~~~~Dilva~~-------~~~~~~~~~~~~l~~~g~vi~n~ 97 (185)
T PRK14029 63 QIYEPDVVVVLD-------PSLLDTVDVTAGLKDGGIVIVNT 97 (185)
T ss_pred ccCCCCEEEEcC-------HHHhhhchHhhCcCCCcEEEEEC
Confidence 457899999863 222211 3467799999999874
No 305
>PRK14755 transcriptional regulatory protein PufK; Provisional
Probab=23.94 E-value=52 Score=16.28 Aligned_cols=14 Identities=36% Similarity=0.530 Sum_probs=11.0
Q ss_pred HHHHHhhhcCCcEE
Q psy16312 58 FQQVLKCLRQDGVF 71 (245)
Q Consensus 58 l~~i~r~LkpGG~l 71 (245)
-+.++.+|+.||..
T Consensus 9 hqhvasvlrsgg~~ 22 (26)
T PRK14755 9 HQHVASVLRSGGXX 22 (26)
T ss_pred HHHHHHHHHcCCcc
Confidence 45688999999864
No 306
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=23.64 E-value=1.6e+02 Score=18.54 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=16.3
Q ss_pred hHHHHHHHhhhcCCcEEEEE
Q psy16312 55 PGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 55 ~~~l~~i~r~LkpGG~l~~~ 74 (245)
..-++++.+.+..||.+++.
T Consensus 50 ~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 50 PEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred hHHHHHHHHHHHcCCEEEEe
Confidence 46677889999999998875
No 307
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=23.54 E-value=3.2e+02 Score=22.20 Aligned_cols=104 Identities=22% Similarity=0.264 Sum_probs=60.4
Q ss_pred ceeeecccccccC-ChhHHHHHHHhhhcCCcEEEEEecCCCcHHHHHHHHHHHHHHhcC-------CCCCcccCCCCHHH
Q psy16312 40 DLLISNLALHWVN-NLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEMERRG-------GVASHISPFTQIRD 111 (245)
Q Consensus 40 D~Vis~~~l~~~~-d~~~~l~~i~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 111 (245)
-+|+|...+..-+ +-...+..++..-..||...+-..+-.++.+++.... +.-.| ....++. ++..+
T Consensus 16 glIVSCQal~~~pl~~~~iv~~mA~Aa~~gGAvgiR~~gv~dIkai~~~v~---vPIIGIiKrd~~~s~v~IT--ptlke 90 (229)
T COG3010 16 GLIVSCQALPGEPLDSPEIVAAMALAAEQGGAVGIRIEGVEDIKAIRAVVD---VPIIGIIKRDYPDSPVRIT--PTLKE 90 (229)
T ss_pred CeEEEeecCCCCCCcchhHHHHHHHHHHhCCcceEeecchhhHHHHHhhCC---CCeEEEEecCCCCCCceec--ccHHH
Confidence 4566665554433 3346777888888899998887644444444333221 11111 1111222 34677
Q ss_pred HHHHHHhCCCeeeEEEEEeEEEeCCCHHHHHHHHhccc
Q psy16312 112 VGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMG 149 (245)
Q Consensus 112 ~~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~~l~~~g 149 (245)
+.++. ++|-+++-++......+-.+..+++...+..|
T Consensus 91 Vd~L~-~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~ 127 (229)
T COG3010 91 VDALA-EAGADIIAFDATDRPRPDGDLEELIARIKYPG 127 (229)
T ss_pred HHHHH-HCCCcEEEeecccCCCCcchHHHHHHHhhcCC
Confidence 77655 58999988886555544447778887766555
No 308
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=23.46 E-value=1e+02 Score=26.84 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=25.6
Q ss_pred CccceeeecccccccCC---hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 37 NSVDLLISNLALHWVNN---LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 37 ~~FD~Vis~~~l~~~~d---~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
..||+|+.. |-.. ..-.|..+.+.|+|||.+++.-
T Consensus 75 ~~~d~~~~~----~pk~k~~~~~~l~~~~~~l~~g~~i~~~G 112 (342)
T PRK09489 75 ADCDTLIYY----WPKNKQEAQFQLMNLLSLLPVGTDIFVVG 112 (342)
T ss_pred CCCCEEEEE----CCCCHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 578888643 3333 3356899999999999988774
No 309
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=23.07 E-value=3.8e+02 Score=21.50 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=16.6
Q ss_pred ChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 53 NLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 53 d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
.+..+++.+.+.++||..+++..
T Consensus 172 ~~~~~~~~v~~~~~~g~IiLlHd 194 (224)
T TIGR02884 172 GWQYAYKQIMKKIHPGAILLLHA 194 (224)
T ss_pred CHHHHHHHHHhcCCCCcEEEEEC
Confidence 34566777777888888777764
No 310
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=22.97 E-value=2.7e+02 Score=21.31 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=23.0
Q ss_pred CccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 37 NSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 37 ~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+..|++++. |+.. +......|+|||.+++.+
T Consensus 63 ~~~D~lval-------~~~~-~~~~~~~l~~~g~vi~n~ 93 (170)
T PRK08338 63 TKADVLVAL-------HQLG-YETAKSSLKEDGLLIIDT 93 (170)
T ss_pred CCCCEEEEc-------CHHH-HHHHhcccCCCeEEEEeC
Confidence 568999875 4433 455667799999999874
No 311
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.87 E-value=3.2e+02 Score=20.63 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCeeeEEEEEeEEEeCCCHHHHHHHHhccccccccccCCCCCCHHHHHHHHHHHHHH
Q psy16312 109 IRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMGESNACVNRSLHFPLELQYASAAIYEKY 176 (245)
Q Consensus 109 ~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (245)
..-+.++|++.||+++..- .+.++.+..+....-.....-......-..++...+.+.+++.
T Consensus 29 akvia~~l~d~GfeVi~~g------~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~ 90 (143)
T COG2185 29 AKVIARALADAGFEVINLG------LFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREA 90 (143)
T ss_pred hHHHHHHHHhCCceEEecC------CcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHh
Confidence 3457888999999886544 2456666666542211111101111233456667777666653
No 312
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=22.51 E-value=1.3e+02 Score=23.13 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=27.7
Q ss_pred eEEEcCCCC---CC--CCCCccceeeecccccccCC-hhHHHHHHHhhhcCCcEEEEEe
Q psy16312 23 EKKFVDEEH---LP--FAENSVDLLISNLALHWVNN-LPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 23 ~f~~~D~~~---l~--~~~~~FD~Vis~~~l~~~~d-~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
.|+.-|... +| + .++||+|++==-+ ...+ ..+....+.-++|+++.+++.+
T Consensus 67 ~F~fyD~~~p~~~~~~l-~~~~d~vv~DPPF-l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 67 EFVFYDYNEPEELPEEL-KGKFDVVVIDPPF-LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred ceEECCCCChhhhhhhc-CCCceEEEECCCC-CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 455555543 22 3 4789999872221 1111 1234455556667878888774
No 313
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=22.43 E-value=1.5e+02 Score=22.07 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=27.7
Q ss_pred CccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 37 NSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 37 ~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
..|++||.-...+. .....+.+.+..+-||.++++.
T Consensus 52 ~~y~~vi~P~~~~~---~~~~~~~l~~~v~~GG~li~~~ 87 (154)
T cd03143 52 SGYKLVVLPDLYLL---SDATAAALRAYVENGGTLVAGP 87 (154)
T ss_pred ccCCEEEECchhcC---CHHHHHHHHHHHHCCCEEEEec
Confidence 37999998776543 2577888889999999888763
No 314
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=22.41 E-value=1.3e+02 Score=26.19 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=27.4
Q ss_pred Cccceeeeccc---------------ccccCChhHHHHHHHhhhcCCcEEEEE
Q psy16312 37 NSVDLLISNLA---------------LHWVNNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 37 ~~FD~Vis~~~---------------l~~~~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
..+|+|+-... |+-..+....+.++.+.|+|+|+++..
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 36898886432 112245677899999999999998765
No 315
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=22.24 E-value=1.6e+02 Score=23.41 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=23.7
Q ss_pred ceeEEEcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEe
Q psy16312 21 IYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 21 ~i~f~~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~ 75 (245)
+++|+..+. ++ ..|.+|+.-.... -.+...+.+.+..+-||.++++.
T Consensus 45 ~vDvv~~~~---dL--~~Ykllv~P~~~~---l~~~~~~~L~~yV~~GG~li~~~ 91 (207)
T PF08532_consen 45 PVDVVSPDD---DL--SGYKLLVLPSLYI---LSPEFAERLRAYVENGGTLILTP 91 (207)
T ss_dssp -EEEE-TTS-------TT-SEEEES--SC-----HHH---HHHHHT-SS-EEE-T
T ss_pred ceEEecCcC---Cc--ccCcEEEEeeEEE---EChHHHHHHHHHHHCCCEEEEEc
Confidence 455555443 44 3599999876643 23577888999999999999875
No 316
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=21.44 E-value=2.1e+02 Score=21.99 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCccceeeecccccccCChhHHHH--HHHhhhcCCcEEEEEe
Q psy16312 36 ENSVDLLISNLALHWVNNLPGCFQ--QVLKCLRQDGVFLASI 75 (245)
Q Consensus 36 ~~~FD~Vis~~~l~~~~d~~~~l~--~i~r~LkpGG~l~~~~ 75 (245)
....|+++|.. + .++. +....|+|||.+++..
T Consensus 64 ~~~~D~lva~~-------~-~~~~~~~~~~~l~~gg~ii~d~ 97 (177)
T TIGR02175 64 IYEPDYVVVLD-------P-TLLKTVNVTAGLKEDGILIVNT 97 (177)
T ss_pred cCCCCEEEEcC-------H-HHhCccchhhCcCCCeEEEEEC
Confidence 35789998853 2 2232 2557799999999874
No 317
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=21.30 E-value=37 Score=29.64 Aligned_cols=31 Identities=16% Similarity=-0.003 Sum_probs=20.6
Q ss_pred CcChHHHHHhhCCCCC--CCCceeEEEcCCCCC
Q psy16312 2 CDNCESILSQAEPPED--TEVIYEKKFVDEEHL 32 (245)
Q Consensus 2 iD~S~~ml~~A~~~~~--~~~~i~f~~~D~~~l 32 (245)
+|+++.|++.|++++. +..|++|..++++++
T Consensus 224 vE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 224 VEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp EES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred eeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 6889999999988654 346899999887654
No 318
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=20.92 E-value=1.4e+02 Score=21.68 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHhCCCeeeEEEE
Q psy16312 107 TQIRDVGSLLTRAGFNMLTIDV 128 (245)
Q Consensus 107 ~~~~~~~~~l~~aGF~~~~~~~ 128 (245)
++++.+..++.++||+++....
T Consensus 96 y~~~~~~~l~~~aGl~~~~~w~ 117 (127)
T PF10017_consen 96 YSPEEFEALAEQAGLEVEKRWT 117 (127)
T ss_pred cCHHHHHHHHHHCCCeeEEEEE
Confidence 5789999999999999876664
No 319
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=20.59 E-value=1.3e+02 Score=24.37 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=38.8
Q ss_pred HHHHhhCCCCCCCCceeEEEcCCCCCC----CCCCccceeeecccccccCChh-HHHHHHHhhhcCCcEEEEEe
Q psy16312 7 SILSQAEPPEDTEVIYEKKFVDEEHLP----FAENSVDLLISNLALHWVNNLP-GCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 7 ~ml~~A~~~~~~~~~i~f~~~D~~~l~----~~~~~FD~Vis~~~l~~~~d~~-~~l~~i~r~LkpGG~l~~~~ 75 (245)
++|..|++| +|+-=+..|+..-. +- +..|+|++--+ -+|.. -+..++..-||+||.++++.
T Consensus 115 eLl~~a~~R----~Ni~PIL~DA~~P~~Y~~~V-e~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 115 ELLDVAEKR----PNIIPILEDARKPEKYRHLV-EKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred HHHHHHHhC----CCceeeecccCCcHHhhhhc-ccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 456666665 46666778886432 22 45788876322 12322 45778899999999877765
No 320
>PRK05844 pyruvate flavodoxin oxidoreductase subunit gamma; Validated
Probab=20.49 E-value=2.3e+02 Score=22.05 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=21.3
Q ss_pred ccceeeecccccccCChhHHH-HHHHhhhcCCcEEEEEe
Q psy16312 38 SVDLLISNLALHWVNNLPGCF-QQVLKCLRQDGVFLASI 75 (245)
Q Consensus 38 ~FD~Vis~~~l~~~~d~~~~l-~~i~r~LkpGG~l~~~~ 75 (245)
..|++++.. +..+. ..+..-|+|||.+++.+
T Consensus 66 ~~Dilv~ld-------~~~~~~~~~~~~l~~~g~iiins 97 (186)
T PRK05844 66 QPDYVLVID-------PGLVFIENIFANEKEDTKYIITT 97 (186)
T ss_pred CCCEEEEec-------HHHhccccHhcCcCCCeEEEEEC
Confidence 789999853 22221 24578899999997764
No 321
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=20.47 E-value=24 Score=25.19 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEE
Q psy16312 36 ENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS 74 (245)
Q Consensus 36 ~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~ 74 (245)
.+.||+|+-... . .....+..+.++| |||+++..
T Consensus 17 ~~~~D~ViD~~g-~---~~~~~~~~~~~~l-~~G~~v~i 50 (127)
T PF13602_consen 17 PGGVDVVIDTVG-Q---TGESLLDASRKLL-PGGRVVSI 50 (127)
T ss_dssp TS-EEEEEESS--C---CHHHCGGGCCCTE-EEEEEEEE
T ss_pred CCCceEEEECCC-C---ccHHHHHHHHHHC-CCCEEEEE
Confidence 578999986544 2 2344557778889 99997444
No 322
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=20.34 E-value=3.3e+02 Score=20.82 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=36.0
Q ss_pred EcCCCCCCCCCCccceeeecccccccCChhHHHHHHHhhhcCCcEEEEEecCCCc
Q psy16312 26 FVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGET 80 (245)
Q Consensus 26 ~~D~~~l~~~~~~FD~Vis~~~l~~~~d~~~~l~~i~r~LkpGG~l~~~~~~~~~ 80 (245)
+.++++.+-....||+|+.-+....- .++.-++++..-|+..-+++|.+.+..+
T Consensus 27 ~~~~~~~~~~~~~yD~i~lG~w~d~G-~~d~~~~~fl~~l~~KkV~lF~T~G~~~ 80 (160)
T PF12641_consen 27 IVSVEEPPEDLEDYDLIFLGFWIDKG-TPDKDMKEFLKKLKGKKVALFGTAGAGP 80 (160)
T ss_pred eEeccccccCCCCCCEEEEEcCccCC-CCCHHHHHHHHHccCCeEEEEEecCCCC
Confidence 34444444323689999987766554 5666666777778877788888866543
No 323
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=20.12 E-value=1.6e+02 Score=24.80 Aligned_cols=51 Identities=18% Similarity=0.058 Sum_probs=28.0
Q ss_pred EEEcCCCCCCCCCCccceeeecccc---ccc----CCh----hHHHHHHHhhhcCCcEEEEEe
Q psy16312 24 KKFVDEEHLPFAENSVDLLISNLAL---HWV----NNL----PGCFQQVLKCLRQDGVFLASI 75 (245)
Q Consensus 24 f~~~D~~~l~~~~~~FD~Vis~~~l---~~~----~d~----~~~l~~i~r~LkpGG~l~~~~ 75 (245)
...+|...+..+ ..||+|+|-+.= ..+ .+. .-+..-+...|+=||.+++-+
T Consensus 108 ~~~~Dc~t~~~~-~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKi 169 (299)
T PF06460_consen 108 SIVGDCRTYMPP-DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKI 169 (299)
T ss_dssp EEES-GGGEEES-S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeccccccCCC-CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEe
Confidence 355666655554 899999996541 111 011 234556778899999988754
Done!