RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16312
(245 letters)
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 97.0 bits (242), Expect = 2e-24
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 26/202 (12%)
Query: 3 DNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVL 62
D +L+QA+ V + D E LP ++S DL++SNLAL W ++L ++
Sbjct: 65 DISAGMLAQAKTKLSENVQFICG--DAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELA 122
Query: 63 KCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFN 122
+ L+ G+ S FG TL+ELR + H + + ++ +LL + F
Sbjct: 123 RVLKPGGLLAFSTFGPGTLHELRQSFGQ-----------HGLRYLSLDELKALL-KNSFE 170
Query: 123 MLTIDVDEIVIHYPSMFELMWDLKGMGESNACVNRSLHFPLELQYASAAIYEKYYGKPND 182
+LT++ + I + + +++ LK G +N + + E
Sbjct: 171 LLTLEEELITLSFDDPLDVLRHLKKTG-ANGLSSGRTSRKQLKAFLERYEQEF------- 222
Query: 183 DKNGGGTCVPATFQIIYLVAWK 204
+P T+ ++Y +A K
Sbjct: 223 ----QPDGLPLTYHVVYGIAKK 240
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 52.7 bits (127), Expect = 3e-09
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFL 72
D E LPF + S D+++S+L LH + + +++ + L+ G +
Sbjct: 47 DAEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 44.0 bits (104), Expect = 9e-06
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 19 EVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGG 78
+ D DL+ + L + + P QQ+ + L+ GV L S
Sbjct: 55 AAVLIFSLFDAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLISTPLA 114
Query: 79 ETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFN 122
+ L + H HIS +++ + LL +AGF
Sbjct: 115 DDDARLFANWHYLRPRNT-----HISFYSE-ESLKRLLEKAGFE 152
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 42.8 bits (101), Expect = 2e-05
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
+ L +NS D++ISN L+ + + +++++ L+ GV + S L EL +
Sbjct: 65 ELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPV--LLSELPAL 122
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAG 120
+ GV + + ++L AG
Sbjct: 123 L-EDLERLYAGVLEG---AIGKKKLLTILREAG 151
>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.
Length = 251
Score = 43.6 bits (103), Expect = 3e-05
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
D E LP A + DL SNLA+ W NL +++ + +R GV + +L EL A
Sbjct: 93 DIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQA 152
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKG 147
++ R A+ P I + G+ + I + + M LKG
Sbjct: 153 --WQAVDERPH-ANRFLPPDAIEQALN-----GWRY-QHHIQPITLWFDDALSAMRSLKG 203
Query: 148 MG 149
+G
Sbjct: 204 IG 205
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 37.6 bits (88), Expect = 0.003
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 30 EHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS--IFGGETLYELRSA 87
E LP A+NSVD++ISN ++ + F++ + L+ G F S + GE E+R+
Sbjct: 138 EALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRND 197
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDL 145
L A ++ Q + ++L AGF +TI P E + D
Sbjct: 198 AEL--------YAGCVAGALQEEEYLAMLAEAGFVDITIQPKR-EYRIPDAREFLEDW 246
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 33.6 bits (77), Expect = 0.021
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 29 EEHLPFAENSVDLLISNLALHWVNNLPGCF-QQVLKCLRQDGVFLASIF 76
EE P A+ S D++IS+ LH + F ++ + L+ GV + ++
Sbjct: 57 EELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLV 105
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 33.4 bits (77), Expect = 0.078
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 3 DNCESILSQAEPPEDTEVIYEKKFV--DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQ 60
D ES+L A + + +FV D E+LPF +NS D + + L V ++ ++
Sbjct: 82 DISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKE 141
Query: 61 VLKCLRQDGVFL 72
+ + L+ G L
Sbjct: 142 MYRVLKPGGRLL 153
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 30.8 bits (70), Expect = 0.15
Identities = 7/47 (14%), Positives = 21/47 (44%)
Query: 25 KFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVF 71
+ + + S D+++++ LH + + + + + L+ GV
Sbjct: 52 RLDVLDAIDLDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional.
Length = 226
Score = 30.4 bits (69), Expect = 0.56
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 30 EHLPFAENSVDLLISNLALHWVNNL 54
E LPF + S D+++S+ ALH +N+
Sbjct: 102 EALPFRDKSFDVVMSSFALHASDNI 126
>gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function
prediction only].
Length = 257
Score = 29.7 bits (67), Expect = 1.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 35 AENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGV 70
E DLL +N L W+ + P +++ L GV
Sbjct: 89 PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGV 124
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 28 DEEHLPFAE-NSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRS 86
LPF + S DL+IS L LH + +++L+ L+ G + S + L E R
Sbjct: 108 LGGVLPFEDSASFDLVISLLVLHLLPPAKA-LRELLRVLKPGGRLVLSDLLRDGLLEGRL 166
Query: 87 AVHLAEMER 95
A L +
Sbjct: 167 AALLGFGDP 175
>gnl|CDD|238586 cd01181, IPT_plexin_repeat3, Third repeat of the IPT domain of
Plexins and Cell Surface Receptors (PCSR) . Plexins are
involved in the regulation of cell proliferation and of
cellular adhesion and repulsion receptors. In general,
there are three copies of the IPT domain present
preceeded by SEMA (semaphorin) and PSI (plexin,
semaphorin, integrin) domains.
Length = 99
Score = 27.8 bits (62), Expect = 2.0
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 103 ISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFE 140
I P G+ +T G N+ T+ I + Y + +
Sbjct: 6 IEPEWSFLSGGTPITVTGTNLNTVQEPRIRVKYGGVEK 43
>gnl|CDD|219802 pfam08341, Fb_signal, Fibronectin-binding protein signal sequence.
This domain is found near the N-terminus of
fibronectin-binding proteins in Streptococcus where it
functions as a signal sequence.
Length = 69
Score = 26.1 bits (58), Expect = 3.9
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 154 CVNRSLHFPLELQYASAAIYEKYYGK 179
C N HFP + + Y+K G
Sbjct: 32 CFNLKKHFPPKSESVGKNWYKKIDGS 57
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate
in most catabolic and anabolic reactions.
Length = 448
Score = 28.0 bits (63), Expect = 4.9
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 35 AENSVDLLISNLALHWVN----NLPGCF--QQVLKCLRQDGV 70
+NS+D +I++LA +P F QQ L G
Sbjct: 31 LDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGA 72
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.419
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,764,203
Number of extensions: 1215048
Number of successful extensions: 976
Number of sequences better than 10.0: 1
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 17
Length of query: 245
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 151
Effective length of database: 6,768,326
Effective search space: 1022017226
Effective search space used: 1022017226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)