RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16312
(245 letters)
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 69.0 bits (169), Expect = 4e-14
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 6/126 (4%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
D + + +D + SN LHWV + + L+ G F+A G + + A
Sbjct: 108 DARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEA 166
Query: 88 VH--LAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELM--W 143
++ L + A + F I + ++L + GF++ + M W
Sbjct: 167 LYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFNRPTTLAEGEFGMANW 226
Query: 144 DLKGMG 149
++
Sbjct: 227 -IQMFA 231
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 68.0 bits (166), Expect = 7e-14
Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 8/122 (6%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
D LPF + +++ +L W ++ + L+ DG +I G
Sbjct: 106 DLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPREN-- 163
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNML-TIDVDEIVIHYPSMFELMWDLK 146
+ + V + + P + L+ GF ++ I V + ++ + +L DL+
Sbjct: 164 -SYPRLYGKDVVCNTMMP----WEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQLSTDLQ 218
Query: 147 GM 148
Sbjct: 219 QS 220
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 65.6 bits (160), Expect = 5e-13
Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 20/135 (14%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
D + L ++S DL S+LALH+V ++ F+ V + L G F+ S + R
Sbjct: 97 DLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPG 156
Query: 88 VHLAEMERR----------GGVASHISPFTQIR------DVGSLLTRAGFNMLTID---- 127
+ RR G + ++ + L R+GF + ++
Sbjct: 157 WAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEFCP 216
Query: 128 VDEIVIHYPSMFELM 142
D + P + E +
Sbjct: 217 TDAQITARPELAEEL 231
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 65.3 bits (159), Expect = 9e-13
Identities = 19/117 (16%), Positives = 29/117 (24%), Gaps = 10/117 (8%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
D DLL +N WV + Q++ L GV + +
Sbjct: 86 DLATWKP-AQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAM 144
Query: 88 VHLAEMERR----GGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFE 140
A+ G P D + L+ VD Y +
Sbjct: 145 HETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSS-----RVDVWHTVYNHPMK 196
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 60.6 bits (147), Expect = 3e-11
Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 17/179 (9%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
E LPF ++S D++ A H +++ ++V + L+QDG FL L
Sbjct: 77 TAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEF 136
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKG 147
V+ R SH+ + + + ++ + I + I Y S + G
Sbjct: 137 VNHLNRLRD---PSHVRESS-LSEWQAMFSANQLAYQDIQKWNLPIQYDSWIKRG----G 188
Query: 148 MGESNACVNRSLHFPLELQYASAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWKPD 206
+ L +AS + + N + G + + I + K +
Sbjct: 189 TPADREKQIITH-----LNHASDEARDTFCITLNQN----GQPISFCLKAILIQGIKRE 238
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 59.6 bits (144), Expect = 4e-11
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 33/115 (28%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
D +P + SVD+ + L+L N+ ++ + L+ G+
Sbjct: 105 DMAQVPLEDESVDVAVFCLSLMGT-NIRDFLEEANRVLKPGGLLK--------------- 148
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELM 142
+AE+ R F +R +T+ GF +++ D+ S F L
Sbjct: 149 --VAEVSSR---------FEDVRTFLRAVTKLGFKIVSKDLTN------SHFFLF 186
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 58.7 bits (142), Expect = 9e-11
Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 5/109 (4%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASIFGGETLYELR 85
D S+D ++S A H + + + + L + G + +
Sbjct: 97 DFLSFEV-PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYD 155
Query: 86 SAVHLAEMERRGGVASHISP--FTQIRDVGSLLTRAGFNMLTIDVDEIV 132
V A+ +A+ + +T+I + ++ GF++ ++ V
Sbjct: 156 KTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHFV 204
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 57.1 bits (138), Expect = 4e-10
Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
E+LP + S D + + +V++ ++ + L++ G + I E+
Sbjct: 92 TAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFL----G 147
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMF---ELMWD 144
+ + + + F+ ++ L+ +AGF V + + +PS E + +
Sbjct: 148 REYEKNKEKSVFYKNARFFST-EELMDLMRKAGFE--EFKVVQTLFKHPSELSEIEPVKE 204
Query: 145 LKGMG 149
G G
Sbjct: 205 GYGEG 209
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 56.5 bits (136), Expect = 7e-10
Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 20/136 (14%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
E + ++ ++++S+LALH++ + ++V L+ G F+ S+ + R
Sbjct: 98 AIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQD 157
Query: 88 VHLAEMERRGGVASH----ISPFTQ-------------IRDVGSLLTRAGFNMLTI---D 127
+ E + S T + L + GF + ++ +
Sbjct: 158 WYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPE 217
Query: 128 VDEIVIHYPSMFELMW 143
+ P M +
Sbjct: 218 PAPELKDLPEMQDEYR 233
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 53.0 bits (127), Expect = 1e-08
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGET--LYELR 85
D +P + SV +I H V + P + ++ L+ G L E + L+
Sbjct: 94 DARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQ 153
Query: 86 SAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGF 121
E V + +++V L R G
Sbjct: 154 ERWRAFAAEEGFPVERGLHAKR-LKEVEEALRRLGL 188
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 52.1 bits (125), Expect = 2e-08
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 10/123 (8%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
E LPF S D+++ L +V ++ + + LR G + + + +
Sbjct: 85 WGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAAL-- 142
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKG 147
+ +G + + F D+ +LL E V P +
Sbjct: 143 --YRRLGEKGVLPWAQARFLAREDLKALLGPPEA------EGEAVFLAPEAHPPYEEADL 194
Query: 148 MGE 150
G
Sbjct: 195 AGR 197
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 51.3 bits (123), Expect = 4e-08
Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 4/98 (4%)
Query: 27 VDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYE--- 83
E DL+ +N AL ++ + L G + ++ +
Sbjct: 105 QLAEAKVPVGKDYDLICANFALLHQ-DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDY 163
Query: 84 LRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGF 121
+ G F + + L AG
Sbjct: 164 QDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGL 201
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 51.7 bits (124), Expect = 4e-08
Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 6/117 (5%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
D LPF + S D + + +LH + + +++ + LR G + F E
Sbjct: 119 DAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKK 178
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWD 144
+ GGV S + S + +A +I +
Sbjct: 179 EAVDAFRAGGGVLSLGGI----DEYESDVRQAELV--VTSTVDISAQARPSLVKTAE 229
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 51.3 bits (123), Expect = 5e-08
Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 18/178 (10%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
D E +PF + ++ +A H N + + L++ G L
Sbjct: 93 DAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVF 152
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKG 147
+ E ER SH + + D +L AGF + + + + M
Sbjct: 153 YNYVEKERD---YSHHRAWKK-SDWLKMLEEAGFELEELHCFHKTFIFEDWCDRM----N 204
Query: 148 MGESNACVNRSLHFPLELQYASAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWKP 205
+ ++ Y+K+ D G + I + A KP
Sbjct: 205 VTTEKKQELSDF-----IKSKPTEYYQKFKIVVED-----GRVYSFRGESILMKARKP 252
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 50.6 bits (121), Expect = 8e-08
Identities = 17/104 (16%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS-IFGGETLYELRS 86
D ++P +N DL++S ++ + ++ F+++ + L+ G FG + L + S
Sbjct: 101 DVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSIS 160
Query: 87 AVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDE 130
A + + + ++L G + I + +
Sbjct: 161 AEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGD 204
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 48.4 bits (115), Expect = 5e-07
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLAS 74
E+L + SVD +IS LA+H ++L FQ++ + +R + L +
Sbjct: 84 YAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLT 130
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 48.3 bits (115), Expect = 5e-07
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 9/117 (7%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
+P +NS D + S A + FQ+ + L+ GV + E + S
Sbjct: 140 SFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI 199
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWD 144
+ + + + S + SL G T+ + +
Sbjct: 200 QPILDRIKLHDMGS-------LGLYRSLAKECGLV--TLRTFSRPDSLVHHYSKVKA 247
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 47.5 bits (113), Expect = 8e-07
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 15/105 (14%)
Query: 28 DEEHLPFAENSVDLLISNLALHWV--NNLPGCFQQVLKCLRQDGVFLASIFGGETLYELR 85
L + L++ +L + LP + + G L S F G +L +
Sbjct: 92 TITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMY 151
Query: 86 SAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDE 130
V A + ++ L AGF + + D
Sbjct: 152 HPVATAY-------------RWPLPELAQALETAGFQVTSSHWDP 183
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 47.4 bits (112), Expect = 1e-06
Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 7/147 (4%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
E ++SVD++ISN + N F+++ + LR G S
Sbjct: 156 TAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA------DRR 209
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTI-DVDEIVIHYPSMFELMWDLK 146
+ A + + + D L+ AGF + + V + + P + +L+ D++
Sbjct: 210 LSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVSVGPVDVSDPQLRKLVPDVQ 269
Query: 147 GMGESNACVNRSLHFPLELQYASAAIY 173
+ C + Y +A Y
Sbjct: 270 FYSCTFRCFKVATLEATREDYGQSATY 296
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 45.8 bits (109), Expect = 2e-06
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 22 YEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFL 72
++ + +NSVD ++ + H +++ +V + L+ DG +
Sbjct: 59 FDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVI 109
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 45.2 bits (107), Expect = 5e-06
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 12/128 (9%)
Query: 2 CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLIS-NLALHWVNNLPGCFQQ 60
D + +L A V+ E LPF + + +++ L +V N F +
Sbjct: 82 VDPSKEMLEVAREKGVKNVVEA----KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSE 137
Query: 61 VLKCLRQDGVFLASIFGG----ETLYELRSAVHLAEMERR--GGVASHISPFTQIR-DVG 113
+ + L DG+ +A++ + + E + + + V + + F
Sbjct: 138 IRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPE 197
Query: 114 SLLTRAGF 121
L + GF
Sbjct: 198 DLDSLEGF 205
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 44.9 bits (106), Expect = 6e-06
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 11/115 (9%)
Query: 28 DEEHLPFAENSVDLLISNLALHWV--NNLPGCFQQVLKCLRQDGVFLASIF--GGETLYE 83
D + D + L V + ++ V + GV L +
Sbjct: 98 DLFDWTP-DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQ 156
Query: 84 LRSAVHLAEMERRGGVASHISPFTQIRDVGSL---LTRAGFNMLTIDVDEIVIHY 135
+ + R R L LT G+ + VDE+ +
Sbjct: 157 QDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGW---SCSVDEVHPGF 208
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 44.9 bits (106), Expect = 7e-06
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
LPF++ S+D +I A +++ + ++ G + + G L EL+
Sbjct: 138 SSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPRHLMELKGL 190
Query: 88 VHLAEMERRGGVASHISPFTQIR 110
++ E+ A + FT +
Sbjct: 191 IY-NEVHLHAPHAEQLEGFTLQQ 212
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 44.5 bits (105), Expect = 9e-06
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 3/106 (2%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVN--NLPGCFQQVLKCLRQDGVFLASIFGGETL-YEL 84
D LPF + S+ + S + + ++ ++ + L+ G+ + + Y
Sbjct: 79 DIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNK 138
Query: 85 RSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDE 130
+ E + I + + + V E
Sbjct: 139 GEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVVE 184
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 44.3 bits (105), Expect = 9e-06
Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 17/112 (15%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
+E +P +N+VD + H ++ +++ + + + E +
Sbjct: 96 EENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPP 155
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMF 139
+ +VG +L AG + V+ +
Sbjct: 156 EEVYSEW----------------EVGLILEDAGI-RVGRVVEVGKYCFGVYA 190
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 43.4 bits (102), Expect = 2e-05
Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 9/182 (4%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLY---EL 84
+ LPF ++S D + L + + + + K L+ G + Y E
Sbjct: 95 NIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEG 154
Query: 85 RSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWD 144
+ A+ R + R + LL +GF I V+ +++ S + D
Sbjct: 155 KKAIEAWNCLIRVQAYMKGNSLVG-RQIYPLLQESGFE--KIRVEPRMVYIDSSKPELVD 211
Query: 145 LKGMGESNACVNRSLHFPLELQYASAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWK 204
+ V L++Q +EK + + GGT F+ K
Sbjct: 212 GFILKTIIPMVEGVKEQSLKMQIIKEEEWEKGIEELHKTAEHGGTFCYTFFKG---WGTK 268
Query: 205 PD 206
Sbjct: 269 EG 270
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 43.1 bits (101), Expect = 3e-05
Identities = 11/128 (8%), Positives = 40/128 (31%), Gaps = 20/128 (15%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLA------SIFGGETL 81
++ P A+ D ++ +L + + + K + + + +
Sbjct: 112 SDDLGPIADQHFDRVVLAHSLWYFAS-ANALALLFKNMAAVCDHVDVAEWSMQPTALDQI 170
Query: 82 YELRSAVHLAEMERR-----GGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYP 136
L++A+ + + + I+P + + + ++ P
Sbjct: 171 GHLQAAMIQGLLYAIAPSDVANIRTLITP----DTLAQIAHDNTWTY----TAGTIVEDP 222
Query: 137 SMFELMWD 144
++ + W+
Sbjct: 223 TLDDAHWE 230
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 42.1 bits (99), Expect = 5e-05
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 15/108 (13%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFLASIFG---GETLY 82
D F E D+++S L++H + + +++ L++ G+F+ + +
Sbjct: 100 DYSKYDF-EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIE 158
Query: 83 ELRSAVHLAEMERRGGVASHISPFTQIRDV---------GSLLTRAGF 121
L + +E G I+ + + + L AGF
Sbjct: 159 NLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGF 206
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 41.3 bits (97), Expect = 9e-05
Identities = 27/150 (18%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Query: 27 VDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRS 86
++ +P+ E D +I L + + ++V ++Q+GV LASI + + +
Sbjct: 82 IETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI-PNVSHISVLA 140
Query: 87 AVHLAEMERRG---GVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMW 143
+ +HI FT ++ + +AG+++ VD + + + L+
Sbjct: 141 PLLAGNWTYTEYGLLDKTHIRFFTF-NEMLRMFLKAGYSI--SKVDRVYVDHKMYEPLIE 197
Query: 144 DLKGMGESNACVNRSLHFPLELQYASAAIY 173
+L G+ + + + + QY A
Sbjct: 198 ELYGICKKYRLGSGFMAETVVFQYIIEAEK 227
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 39.8 bits (93), Expect = 3e-04
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 28 DEEHLPFAENSVDLLISNLALHWV---NNLPGCFQQVLKCLRQDGVFLASIFGGE 79
D +E DL++S + + + + L DG + G
Sbjct: 97 DLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR 151
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 38.4 bits (89), Expect = 0.001
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVN--NLPGCFQQVLKCLRQDGVFL 72
D L F + + D +I ++ L F++V + L+ G F+
Sbjct: 93 DARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 38.0 bits (88), Expect = 0.001
Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 13/121 (10%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLA-----------SIF 76
D + + D+ I + L + Q+++ +++ G + +
Sbjct: 80 DATEIEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLL 138
Query: 77 GGETLYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYP 136
GE E L ++ + + L+ G + V + V
Sbjct: 139 DGEKQSEFIQLGVLQKLFESDTQRNGKDGNIG-MKIPIYLSELGVKNIECRVSDKVNFLD 197
Query: 137 S 137
S
Sbjct: 198 S 198
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 37.9 bits (88), Expect = 0.001
Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 9/151 (5%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
+ LPF +DL+ S A++ + + K L++ G + E
Sbjct: 104 SMDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLA--------VSECSWF 154
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKG 147
E I + + + +AG+ + + F +
Sbjct: 155 TDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFILPENCWTDHYFTPKVAAQK 214
Query: 148 MGESNACVNRSLHFPLELQYASAAIYEKYYG 178
+ + N+ LQ +Y KY
Sbjct: 215 IFLTKYAGNKIAEEFSMLQSIEEELYHKYKE 245
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 21/152 (13%), Positives = 42/152 (27%), Gaps = 51/152 (33%)
Query: 7 SILSQAEPPEDT------EVI---YEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGC 57
++ ++ DT E+I + + + NS AL
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS--------AL--------- 145
Query: 58 FQQVLKCLRQDGVFLASIFGG-----ETLYELRSAVHLAEMERRGGVASHISPFTQIRDV 112
+ + + L +IFGG + ELR L + + I+
Sbjct: 146 ----FRAVGEGNAQLVAIFGGQGNTDDYFEELRD---LYQTYH-----VLVGDL--IKFS 191
Query: 113 GSLLTRAGFNMLTIDVDEIVIHYPSMFELM-W 143
L+ L + + ++ W
Sbjct: 192 AETLSE-----LIRTTLDAEKVFTQGLNILEW 218
Score = 33.1 bits (75), Expect = 0.080
Identities = 31/226 (13%), Positives = 69/226 (30%), Gaps = 73/226 (32%)
Query: 49 HWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQ 108
H+ + G F +L + + V L FGGE +R + + M V +
Sbjct: 1652 HFKDTY-G-FS-ILDIVINNPVNLTIHFGGEKGKRIRE--NYSAMIFETIVDGKLKTEKI 1706
Query: 109 IRDVGSLLTRAGFN---------------MLTIDVDEIVIHYPSMFELMWDLKGM----- 148
+++ T F + ++ + FE + KG+
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK--------AAFEDLKS-KGLIPADA 1757
Query: 149 -------GESNA--CVNRSLHFP--LEL-----QYASAAIYEKYYGKPNDDKNGGGTCVP 192
GE A + + +E+ A+ P D+ +
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV-------PRDELGRSNYGMI 1810
Query: 193 ATFQIIYLVAWKPDPSQPKPLKRGSGEVSLKDLHRIDDIAKQKGFI 238
A +P + + + +L+ + ++ + K+ G++
Sbjct: 1811 AI-----------NPGR---VAASFSQEALQYV--VERVGKRTGWL 1840
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 36.0 bits (83), Expect = 0.006
Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 19/156 (12%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
++LPF +DL+ S A++ + + K L++ G + E
Sbjct: 104 SMDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIA--------VSEASWF 154
Query: 88 VHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFN-----MLTIDVDEIVIHYPSMFELM 142
E + I + RAG+ +L + P
Sbjct: 155 TSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFILPENCWTEHYFAP-----Q 209
Query: 143 WDLKGMGESNACVNRSLHFPLELQYASAAIYEKYYG 178
+++ N++ ++ Q ++Y KY
Sbjct: 210 DEVRETFMKEHAGNKTAMDFMKGQQYERSLYSKYKD 245
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 35.4 bits (81), Expect = 0.011
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 33 PFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFG 77
+ +D++ + HW + + LR+DG +
Sbjct: 108 SVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYA 151
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 34.8 bits (80), Expect = 0.013
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 16/97 (16%)
Query: 27 VDEEHLPFAENSVDLLISNLALHWV--NNLPGCFQQVLKCLRQDGVFLASIFGGETLYEL 84
H A ++ D + ++ L V + L + + + L+ G+F AS GE
Sbjct: 91 TMLFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEG---- 146
Query: 85 RSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGF 121
++ ++ S +R AG
Sbjct: 147 ------EGRDKLARYYNYPSE-EWLRA---RYAEAGT 173
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 34.4 bits (79), Expect = 0.022
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 16/108 (14%)
Query: 34 FAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEM 93
A D+ A G + + + L+ G+ L G +L + +A+
Sbjct: 99 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML---IGEPYWRQLPATEEIAQA 155
Query: 94 ERRGGVASHISPFTQIRDVGSLLT---RAGFN---MLTIDVDEIVIHY 135
+S + + L+ G++ M+ D + +
Sbjct: 156 C-------GVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYE 196
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 33.1 bits (75), Expect = 0.049
Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 36/125 (28%)
Query: 28 DEEHLPFAENSV-DLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRS 86
+ LP + L++S ++ + D FL
Sbjct: 100 GKGELPAGLGAPFGLIVSRRGPTS------VILRLPELAAPDAHFLY------------- 140
Query: 87 AVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLK 146
+ P + +V L G++++ D ++ H P+ + +
Sbjct: 141 ----------------VGPRLNVPEVPERLAAVGWDIVAEDHVSVLAHAPTWEDWQMRGE 184
Query: 147 GMGES 151
MG+
Sbjct: 185 FMGKL 189
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 33.0 bits (76), Expect = 0.068
Identities = 13/95 (13%), Positives = 22/95 (23%), Gaps = 20/95 (21%)
Query: 53 NLPGCFQQVLKCLRQDGVFLA-SIFGGETLYELRSAVHLAEMERRGGVASHISPFTQ--- 108
N F++ + DG S L+ R F
Sbjct: 172 NYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFI------KFIVTEI 225
Query: 109 --------IRDVGSLLTRAGFNMLTIDVDEIVIHY 135
+ +AGF + + + HY
Sbjct: 226 FPGGRLPSTEMMVEHGEKAGFTV--PEPLSLRPHY 258
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 32.9 bits (76), Expect = 0.074
Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 20/95 (21%)
Query: 53 NLPGCFQQVLKCLRQDGVFLA-SIFGGETLYELRSAVHLAEMERRGGVASHISPFTQ--- 108
F + L DGV L +I G + ++ R F
Sbjct: 146 RYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFL------KFIVTEI 199
Query: 109 --------IRDVGSLLTRAGFNMLTIDVDEIVIHY 135
I V + GF + V + HY
Sbjct: 200 FPGGRLPSIPMVQECASANGFTV--TRVQSLQPHY 232
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 32.2 bits (74), Expect = 0.11
Identities = 13/95 (13%), Positives = 22/95 (23%), Gaps = 20/95 (21%)
Query: 53 NLPGCFQQVLKCLRQDGVFLA-SIFGGETLYELRSAVHLAEMERRGGVASHISPFTQ--- 108
F++ DG L +I + + R F
Sbjct: 161 RYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFI------KFILTEI 214
Query: 109 --------IRDVGSLLTRAGFNMLTIDVDEIVIHY 135
I V + AG+ + I +Y
Sbjct: 215 FPGGRLPRISQVDYYSSNAGWKV--ERYHRIGANY 247
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 32.1 bits (73), Expect = 0.12
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSA 87
+ PF + +V +N + +V+ L F + + L+ G ++ Y S
Sbjct: 175 NMLDTPFDKGAVTASWNNESTMYVD-LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSK 233
Query: 88 VHLAEMERRGGVASHISP-FTQIRDVGSLLTRAGFNMLTID 127
++++ H R+ + TI
Sbjct: 234 -WVSQINA------HFECNIHSRREYLRAMADNRLVPHTIV 267
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 31.6 bits (71), Expect = 0.20
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 28 DEEHLPFAENSVDLLISNLALHWVNN--LPGCFQQVLKCLRQDGVFL 72
E N+ DL++ ++ + F+ + L +G
Sbjct: 148 SMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIF 194
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 31.2 bits (70), Expect = 0.23
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 3 DNCESILSQAE--PPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNN--LPGCF 58
D E L QA+ E+ + + + +S D++ + + + L
Sbjct: 109 DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFL 168
Query: 59 QQVLKCLRQDGVFL 72
++ LR +G+ +
Sbjct: 169 RRCKGSLRPNGIIV 182
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase,
(beta-alpha)8-TIM-barrel, B-cell epitopes, allergen,
banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3
Length = 312
Score = 29.0 bits (64), Expect = 1.3
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 8/111 (7%)
Query: 116 LTRAGFNMLTIDVDEIVIHYPSMFELMWD-------LKGMGESNACVNRSLHFPLELQ-Y 167
L A F + V + Y ++F+ + D G V+ S
Sbjct: 188 LPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESGWPSAGGGAE 247
Query: 168 ASAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWKPDPSQPKPLKRGSG 218
AS + + Y GG P Y+ + + +++ G
Sbjct: 248 ASTSNAQTYNQNLIRHVGGGTPRRPGKEIEAYIFEMFNENQKAGGIEQNFG 298
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 28.8 bits (64), Expect = 1.7
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 58 FQQVLKCLRQDGVFLASIFGGETLYELRSAV 88
F+ + L G+++A+ L +S +
Sbjct: 183 FEHCHRGLAPGGLYVANCGDHSDLRGAKSEL 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 3.1
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 21 IYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGET 80
Y+ D + P E V+ ++ + LP + ++ D + +A + E
Sbjct: 529 FYKPYICDND--PKYERLVNAIL--------DFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 81 LYE 83
++E
Sbjct: 579 IFE 581
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 26.8 bits (58), Expect = 8.6
Identities = 9/63 (14%), Positives = 22/63 (34%)
Query: 171 AIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWKPDPSQPKPLKRGSGEVSLKDLHRIDD 230
+Y ++Y K +D G P ++I + ++ + +R ++
Sbjct: 369 DLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPEN 428
Query: 231 IAK 233
K
Sbjct: 429 THK 431
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.419
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,864,014
Number of extensions: 230357
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 56
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)