RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16312
         (245 letters)



>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 234

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 17/165 (10%)

Query: 40  DLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGV 99
           D++    A H  +++    ++V + L+QDG FL           L   V+     R    
Sbjct: 84  DIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPS- 142

Query: 100 ASHISPFTQIRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMGESNACVNRSL 159
             H+   + + +  ++ +        I    + I Y S  +         +         
Sbjct: 143 --HVRESS-LSEWQAMFSANQLAYQDIQKWNLPIQYDSWIKRGGTPADREKQ-------- 191

Query: 160 HFPLELQYASAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWK 204
                L +AS    + +    N +    G  +    + I +   K
Sbjct: 192 -IITHLNHASDEARDTFCITLNQN----GQPISFCLKAILIQGIK 231


>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
           [TaxId: 562]}
          Length = 245

 Score = 37.6 bits (86), Expect = 7e-04
 Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 10/117 (8%)

Query: 22  YEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQVLKCLRQDGVFLASIFGGETL 81
                 ++     A    D+     A        G  + + + L+  G+ L         
Sbjct: 84  RVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY---- 139

Query: 82  YELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGF---NMLTIDVDEIVIHY 135
              R      E+ +  GV+S  S F  +  +       G+    M+  D +    + 
Sbjct: 140 --WRQLPATEEIAQACGVSST-SDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYE 193


>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
           cereus [TaxId: 1396]}
          Length = 281

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 16/172 (9%)

Query: 2   CDNCESILSQAEPPEDTEVIYEKKFVDEEHLPFAENSVDLLISNLALHWVNNLPGCFQQV 61
            D+ E++L++A           +    +       +  D+ I +  L  +       Q++
Sbjct: 58  IDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKM 117

Query: 62  LKCLRQDGVFLASI--FGGETLYELRSAVHLAEMERRGGVASHISPFTQI--------RD 111
           +  +++ G  +     +       L      +E  + G +       TQ           
Sbjct: 118 IHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMK 177

Query: 112 VGSLLTRAGFNMLTIDVDEIVIHYPS------MFELMWDLKGMGESNACVNR 157
           +   L+  G   +   V + V    S        +L   LK  G +    ++
Sbjct: 178 IPIYLSELGVKNIECRVSDKVNFLDSNMHHNDKNDLYQSLKEEGIAGDPGDK 229


>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase
           (SAMT) {Clarkia breweri [TaxId: 36903]}
          Length = 359

 Score = 28.0 bits (62), Expect = 1.1
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 34  FAENSVDLLISNLALHWVNNLPGC 57
           F  N++  + S+ +L W++ +P  
Sbjct: 135 FPRNTLHFIHSSYSLMWLSQVPIG 158


>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389
           {Thermotoga maritima [TaxId: 2336]}
          Length = 246

 Score = 27.4 bits (59), Expect = 1.4
 Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 24/156 (15%)

Query: 49  HWVNNLPGCFQQVLKCLRQDGVFLASIFGGETLYELRSAVHLAEMERRGGVASHISPFTQ 108
            +V N    F ++ + L  DG+ +A++    T         L +M  +      I+ F +
Sbjct: 114 SYVENKDKAFSEIRRVLVPDGLLIATVDNFYTF--------LQQMIEKDA-WDQITRFLK 164

Query: 109 IRDVGSLLTRAGFNMLTIDVDEIVIHYPSMFELMWDLKGMGESNACVNRSLHFPLELQYA 168
            +      T   FN      +++       FE + D++G+G         + +P E    
Sbjct: 165 TQTTSVGTTLFSFNSYAFKPEDLDSLE--GFETV-DIRGIG--------VMEYPDERISE 213

Query: 169 SAAIYEKYYGKPNDDKNGGGTCVPATFQIIYLVAWK 204
                 +   + + D+N     +     I +++  K
Sbjct: 214 REETIFRLEQELSRDRN----IIWKADHIFFVLKKK 245


>d1q32a2 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesterase TDP1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 237

 Score = 24.7 bits (53), Expect = 9.8
 Identities = 5/47 (10%), Positives = 10/47 (21%)

Query: 81  LYELRSAVHLAEMERRGGVASHISPFTQIRDVGSLLTRAGFNMLTID 127
                         RRG   +H   +       +    A      ++
Sbjct: 110 FKVFYKQDPAMVTRRRGTTPAHSKFYMHCATNSAGPCDASQVFKELE 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 949,681
Number of extensions: 44454
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 7
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.5 bits)