Query psy16313
Match_columns 1018
No_of_seqs 476 out of 1626
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 18:11:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2058|consensus 100.0 1.8E-38 4E-43 358.6 14.7 226 337-584 144-371 (436)
2 smart00164 TBC Domain in Tre-2 100.0 2E-37 4.4E-42 314.3 18.2 195 348-561 2-198 (199)
3 KOG4567|consensus 100.0 2.3E-34 5E-39 309.3 18.2 265 325-602 11-340 (370)
4 KOG2223|consensus 100.0 1.2E-33 2.6E-38 312.2 10.4 273 325-608 276-560 (586)
5 COG5210 GTPase-activating prot 100.0 8E-33 1.7E-37 320.6 16.1 245 319-581 179-428 (496)
6 KOG2224|consensus 100.0 3.8E-33 8.3E-38 306.9 12.5 243 320-564 404-678 (781)
7 KOG2197|consensus 100.0 7.1E-31 1.5E-35 303.3 9.5 246 316-563 143-389 (488)
8 KOG1092|consensus 100.0 2.6E-30 5.6E-35 286.4 12.6 216 335-559 174-414 (484)
9 PF00566 RabGAP-TBC: Rab-GTPas 100.0 3.2E-30 6.8E-35 261.9 12.0 148 410-561 46-194 (214)
10 KOG2222|consensus 99.9 5.9E-26 1.3E-30 252.7 10.5 219 337-576 157-377 (848)
11 KOG4347|consensus 99.9 4.3E-26 9.3E-31 263.2 5.9 250 323-597 173-426 (671)
12 KOG4436|consensus 99.9 6.1E-23 1.3E-27 240.0 12.6 237 323-579 549-790 (948)
13 KOG1102|consensus 99.8 6.6E-22 1.4E-26 224.6 6.8 217 337-577 133-350 (397)
14 KOG1093|consensus 99.8 1.1E-20 2.4E-25 215.8 12.8 257 324-632 332-591 (725)
15 KOG2221|consensus 99.8 1E-21 2.2E-26 203.9 2.1 190 323-536 75-267 (267)
16 KOG1091|consensus 99.8 5E-20 1.1E-24 210.6 12.0 204 354-562 28-311 (625)
17 KOG2595|consensus 99.6 1.7E-15 3.7E-20 166.0 10.1 199 337-564 46-251 (395)
18 KOG4436|consensus 99.4 3.4E-13 7.4E-18 159.4 9.5 217 337-572 172-397 (948)
19 KOG2197|consensus 98.8 7.5E-10 1.6E-14 129.6 1.1 56 2-57 346-401 (488)
20 KOG3636|consensus 98.8 1.1E-08 2.3E-13 116.0 9.1 149 412-565 68-218 (669)
21 KOG2224|consensus 98.8 1.1E-09 2.4E-14 123.0 -0.5 50 7-56 639-688 (781)
22 KOG1648|consensus 98.7 6.4E-10 1.4E-14 126.5 -5.0 217 320-561 530-746 (813)
23 cd06403 PB1_Par6 The PB1 domai 97.6 0.00022 4.9E-09 65.2 7.1 70 156-230 7-78 (80)
24 smart00666 PB1 PB1 domain. Pho 97.2 0.00093 2E-08 59.9 6.9 75 145-229 2-80 (81)
25 cd06402 PB1_p62 The PB1 domain 96.9 0.0027 5.8E-08 59.4 7.3 81 147-231 3-86 (87)
26 KOG2801|consensus 96.4 0.0078 1.7E-07 66.6 7.2 213 338-574 31-250 (559)
27 cd05992 PB1 The PB1 domain is 95.9 0.027 5.8E-07 50.3 6.9 68 158-229 9-80 (81)
28 PF00564 PB1: PB1 domain; Int 95.7 0.031 6.7E-07 50.2 6.7 69 158-231 10-83 (84)
29 cd06408 PB1_NoxR The PB1 domai 95.0 0.049 1.1E-06 51.1 5.7 61 156-222 9-69 (86)
30 cd06398 PB1_Joka2 The PB1 doma 94.7 0.089 1.9E-06 49.7 6.7 76 147-231 3-88 (91)
31 cd06407 PB1_NLP A PB1 domain i 94.5 0.097 2.1E-06 48.5 6.4 57 157-218 8-66 (82)
32 KOG1648|consensus 93.9 0.047 1E-06 64.1 3.7 53 947-1000 750-802 (813)
33 cd06396 PB1_NBR1 The PB1 domai 93.4 0.15 3.2E-06 47.5 5.4 75 145-229 1-76 (81)
34 COG5210 GTPase-activating prot 91.5 0.053 1.1E-06 64.6 -0.1 56 2-57 367-422 (496)
35 KOG4567|consensus 90.0 0.22 4.7E-06 56.4 2.9 39 3-41 269-307 (370)
36 cd06401 PB1_TFG The PB1 domain 88.6 0.96 2.1E-05 42.2 5.6 68 157-230 8-79 (81)
37 PF00566 RabGAP-TBC: Rab-GTPas 84.5 0.46 9.9E-06 48.9 1.3 41 2-42 154-194 (214)
38 cd06404 PB1_aPKC PB1 domain is 82.4 2.8 6.1E-05 39.4 5.4 64 145-218 1-66 (83)
39 cd06409 PB1_MUG70 The MUG70 pr 76.1 7.9 0.00017 36.7 6.3 62 163-229 15-83 (86)
40 cd06406 PB1_P67 A PB1 domain i 75.4 7.3 0.00016 36.5 5.8 60 167-230 18-78 (80)
41 KOG1092|consensus 74.8 4.1 8.9E-05 48.1 5.0 56 938-998 412-471 (484)
42 PF14961 BROMI: Broad-minded p 69.7 10 0.00022 49.9 7.1 141 440-581 1086-1245(1296)
43 KOG3606|consensus 53.8 20 0.00044 40.4 5.1 72 156-232 25-98 (358)
44 KOG1091|consensus 51.3 7.1 0.00015 47.6 1.2 36 12-47 278-314 (625)
45 cd06397 PB1_UP1 Uncharacterize 46.6 33 0.00071 32.4 4.5 63 148-220 4-67 (82)
46 KOG1093|consensus 46.6 15 0.00033 45.1 3.0 56 943-1001 536-591 (725)
47 cd06411 PB1_p51 The PB1 domain 42.1 71 0.0015 30.0 5.9 61 167-229 14-75 (78)
48 cd06410 PB1_UP2 Uncharacterize 34.9 1.2E+02 0.0027 29.3 6.6 59 158-218 22-80 (97)
49 PF09379 FERM_N: FERM N-termin 34.4 47 0.001 29.5 3.5 50 157-208 5-56 (80)
50 PF03296 Pox_polyA_pol: Poxvir 31.3 31 0.00068 35.5 2.0 31 982-1012 24-54 (149)
51 PRK00587 hypothetical protein; 23.9 50 0.0011 32.1 1.9 43 136-184 29-74 (99)
52 PRK14629 hypothetical protein; 20.0 65 0.0014 31.4 1.8 47 133-184 28-77 (99)
No 1
>KOG2058|consensus
Probab=100.00 E-value=1.8e-38 Score=358.60 Aligned_cols=226 Identities=23% Similarity=0.248 Sum_probs=195.0
Q ss_pred cCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCchHHHHhHhhh
Q psy16313 337 IQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRK 416 (1018)
Q Consensus 337 id~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~~~~Dl~~i~~qIeK 416 (1018)
...++|+++| ++|||+++|+.||..+.|... ....++.|+.+.... ...-..+.++|+.
T Consensus 144 ~~s~elk~li-RkGiP~~~R~~VW~~~~g~~~-----------~~~~~~~yq~ll~~~---------~~~~~~~~~qI~~ 202 (436)
T KOG2058|consen 144 PRSDELKRLI-RKGIPPELRGEVWWVLSGARR-----------QLNYPGYYQELLRKG---------DEKKSPVVKQIKL 202 (436)
T ss_pred CCcHHHHHHH-HcCCChhhhhHHHHHHhcchh-----------hccCchhHHHHHhcC---------CCccchHHHHHHh
Confidence 3468999999 599999999999999998431 111166777776531 1111135689999
Q ss_pred hcccccccc-cccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHHHHHHHHHhhhccc-C
Q psy16313 417 DVLRTDRHH-VFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFL-V 494 (1018)
Q Consensus 417 DV~RTfp~~-~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWcF~~LMer~~~nF~-~ 494 (1018)
|+.||||++ ++|... +..++..|+|||.|||.+||+||||||||+|||++|++|+.|++|||||+.+++++.+.|+ .
T Consensus 203 DL~RTfP~n~~~~~~~-~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~ 281 (436)
T KOG2058|consen 203 DLPRTFPDNFKGFDSE-DSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTP 281 (436)
T ss_pred ccccccCCCcccCCCC-CchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhcCc
Confidence 999999999 788876 4566899999999999999999999999999999999999788999999999999997777 4
Q ss_pred CChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcCCCCCCCCccccccc
Q psy16313 495 DGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDV 574 (1018)
Q Consensus 495 d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~~~~~~feL~L~~l 574 (1018)
+..|......+|+.||+..+|+|+.||...+++..++++.||+++|+..+|.+++|||||++|..+....+++.++++..
T Consensus 282 nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~ 361 (436)
T KOG2058|consen 282 NLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKK 361 (436)
T ss_pred hhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66788888889999999999999999999999999999999999999999999999999999999999889999999998
Q ss_pred cCCCCCCCCC
Q psy16313 575 KFEPPCDPAP 584 (1018)
Q Consensus 575 ~fd~il~a~~ 584 (1018)
.-+.++....
T Consensus 362 ~ee~il~~~~ 371 (436)
T KOG2058|consen 362 HEEEILKEDS 371 (436)
T ss_pred hHHHHhcCCC
Confidence 8777755443
No 2
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=2e-37 Score=314.32 Aligned_cols=195 Identities=34% Similarity=0.562 Sum_probs=170.2
Q ss_pred hCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCchHHHHhHhhhhcccccccccc
Q psy16313 348 YGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVF 427 (1018)
Q Consensus 348 rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~~~~Dl~~i~~qIeKDV~RTfp~~~f 427 (1018)
++|||+++|+.||+.++|+.+...+ .....|.++++++... . ....++|++||.||+|++++
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~------~---~~~~~~I~~Dv~Rt~~~~~~ 63 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPK------D---KSIVHQIEKDLRRTFPEHSF 63 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCC------C---hhhHHHHhcccCCCCCCchh
Confidence 6999999999999999999854321 1367888888764321 1 11457999999999999999
Q ss_pred cccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHHHHHHHHHhhhcccC-CChHHHHHHHHH
Q psy16313 428 YAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFLV-DGITMTQRFQHL 506 (1018)
Q Consensus 428 F~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWcF~~LMer~~~nF~~-d~~gm~~~L~vL 506 (1018)
|+.. ..++++.|.|||.+|+.+||++||||||++|||+||+++.+|++|||||+++|++....|+. +..++...+..+
T Consensus 64 f~~~-~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 142 (199)
T smart00164 64 FQDK-EGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQL 142 (199)
T ss_pred hcCC-CcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHH
Confidence 9864 34789999999999999999999999999999999999988999999999999999877654 344677888999
Q ss_pred HHHHHhhCHHHHHHHHH-cCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcCC
Q psy16313 507 ADGLEYYHPKFYEYLKS-HQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLP 561 (1018)
Q Consensus 507 e~LLk~~DPeLy~HLkk-~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~ 561 (1018)
+.+|+.++|+||+||++ .|+++.+|+++||+++|+++||++.++||||++|..|.
T Consensus 143 ~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 143 DRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999996 99999999999999999999999999999999999874
No 3
>KOG4567|consensus
Probab=100.00 E-value=2.3e-34 Score=309.29 Aligned_cols=265 Identities=23% Similarity=0.389 Sum_probs=208.8
Q ss_pred HHHhhhccCCCccCHHHHHHHHHhCCCC--chhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhc--
Q psy16313 325 EFRQFLDPVGQIIQSRELRTVIYYGGIE--PSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKR-- 400 (1018)
Q Consensus 325 eW~k~Ld~~Griid~ekLR~lI~rgGIP--~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~-- 400 (1018)
....++..-...++.++||+.++ .|+| .++|+.+|++|||++|++... |...+++++..|.++.++--.-...
T Consensus 11 ~~edvl~~~~~~id~kelr~~~~-~g~p~~~~lR~~~WkllL~Yl~~er~~--w~s~La~~R~~Y~q~i~e~v~epg~~~ 87 (370)
T KOG4567|consen 11 SIEDVLNPADDTIDLKELRKLCF-YGVPDDASLRPLVWKLLLGYLPPERSK--WTSFLAKKRSLYKQFIEEIVDEPGKKD 87 (370)
T ss_pred hHHHhhccccchhhHHHHHHHhh-cCCCCccchhHhHHHHHHhhcChhhhh--hHHHHHHHHHHHHHHHHHhccCccccc
Confidence 44555655555588999999996 9999 689999999999999887554 5588999999999887652111100
Q ss_pred --------c------C---CCCch------HHHHhHhhhhcccccccccccccCCcch----------------------
Q psy16313 401 --------G------Q---MVGDL------AYVTGMVRKDVLRTDRHHVFYAGADDNC---------------------- 435 (1018)
Q Consensus 401 --------~------~---~~~Dl------~~i~~qIeKDV~RTfp~~~fF~g~ddn~---------------------- 435 (1018)
. . ...++ .++..||++||.||.|...+|+....-+
T Consensus 88 ~~~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~ 167 (370)
T KOG4567|consen 88 NSKKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRL 167 (370)
T ss_pred cccccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhccc
Confidence 0 0 01112 2466899999999999999998743222
Q ss_pred --hHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcC----------chHHHHHHHHHHHHHhhhcccC--C--ChHH
Q psy16313 436 --NVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMS----------NEAHAYICFCALMRRLGRNFLV--D--GITM 499 (1018)
Q Consensus 436 --~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~----------dEaDAFWcF~~LMer~~~nF~~--d--~~gm 499 (1018)
......|||+.||..||+||||||||.|+|||++|+. .|+|||+||..||..++++|.. | +.|+
T Consensus 168 gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI 247 (370)
T KOG4567|consen 168 GLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGI 247 (370)
T ss_pred chhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccch
Confidence 1224578999999999999999999999999999983 4899999999999999999973 2 4466
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcCCCCCCCCccccccccCCCC
Q psy16313 500 TQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEPP 579 (1018)
Q Consensus 500 ~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~~~~~~feL~L~~l~fd~i 579 (1018)
...+..+..+|+.+|-+||.||+..++.|.+|++||+.+|++.|||+++|+||||.++++ +.+|++. -.+
T Consensus 248 ~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD----~~rfd~L------l~i 317 (370)
T KOG4567|consen 248 HFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD----PQRFDFL------LYI 317 (370)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC----hhhhHHH------HHH
Confidence 666889999999999999999999999999999999999999999999999999999875 3334331 125
Q ss_pred CCCCCCCCCCCCcccccccchhh
Q psy16313 580 CDPAPNSPSPSPRENQYTKVCAI 602 (1018)
Q Consensus 580 l~a~~~S~~~~l~eN~f~svc~i 602 (1018)
|.++..-....++++.|+..--+
T Consensus 318 Ccsmlil~Re~il~~DF~~nmkL 340 (370)
T KOG4567|consen 318 CCSMLILVRERILEGDFTVNMKL 340 (370)
T ss_pred HHHHHHHHHHHHHhcchHHHHHH
Confidence 66666666667888888754433
No 4
>KOG2223|consensus
Probab=100.00 E-value=1.2e-33 Score=312.24 Aligned_cols=273 Identities=22% Similarity=0.278 Sum_probs=224.9
Q ss_pred HHHh-hhccCCCccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccC-
Q psy16313 325 EFRQ-FLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQ- 402 (1018)
Q Consensus 325 eW~k-~Ld~~Griid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~- 402 (1018)
.|.. ++.+|....+..++|.+. |.|||+.+||+||....|.. .+.|.+-....+.+..+. .|++..++..
T Consensus 276 vW~~eILpnWe~m~~SrR~relW-wQGiP~~VRGkvW~laIGNe-l~it~elfd~~la~Aker------~ak~~aeq~~~ 347 (586)
T KOG2223|consen 276 VWENEILPNWEDMLKSRRVRELW-WQGIPPSVRGKVWSLAIGNE-LNITYELFDIALARAKER------EAKSLAEQMSN 347 (586)
T ss_pred HHHHHhccchHHHHhhHHHHHHH-HccCChhhcchhhHhhhCcc-cccCHHHHHHHHHHHHHH------HHHHHHhhccc
Confidence 4544 677777777788899875 79999999999999999986 445544332222222111 1444333322
Q ss_pred CCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHHHH
Q psy16313 403 MVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFC 482 (1018)
Q Consensus 403 ~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWcF~ 482 (1018)
...+.+.-..+|+.|+.||||+..+|+. +++..+.|..||.||+.|.|+|||+|||++|||+||+.| ++++||.||.
T Consensus 348 sa~~re~sv~~i~LDisrTfpsl~iFqk--~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiafA 424 (586)
T KOG2223|consen 348 SAADREASVELIKLDISRTFPSLSIFQK--GGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAFA 424 (586)
T ss_pred chhhhhcchhheeechhccCcceeeecc--CCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHHH
Confidence 2334455568999999999999999997 579999999999999999999999999999999999999 6779999999
Q ss_pred HHHHHhh--hcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcC
Q psy16313 483 ALMRRLG--RNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSL 560 (1018)
Q Consensus 483 ~LMer~~--~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl 560 (1018)
+|+++.+ ..|..+...|...+..|+..|+...|+|+.||++.++.|.+|.+.|+.++|+..+|++.++||||+|+-++
T Consensus 425 NLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdg 504 (586)
T KOG2223|consen 425 NLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDG 504 (586)
T ss_pred HHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecc
Confidence 9999976 66778999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCC--------ccccccccCCCCCCCCCCCCCCCCcccccccchhhhhcccc
Q psy16313 561 PPNPPQG--------ELPLYDVKFEPPCDPAPNSPSPSPRENQYTKVCAIRRQTTS 608 (1018)
Q Consensus 561 ~~~~~~f--------eL~L~~l~fd~il~a~~~S~~~~l~eN~f~svc~ir~qsss 608 (1018)
..+.++. +-.|+.++|++++.+....|....-+..|.++..+.|||++
T Consensus 505 eeFlfr~~lgIlklyepkLl~mDf~~~~qfLtklp~dL~~eelF~~i~~~~~~sr~ 560 (586)
T KOG2223|consen 505 EEFLFRTALGILKLYEPKLLVMDFIHVAQFLTKLPEDLTPEELFMHIAYIQMQSRS 560 (586)
T ss_pred hHHHHHHHHHHHHHccchHhhhhHHHHHHHHHhCcccCCHHHHHHHHHHHhhhhhc
Confidence 7765443 44667778888888888888777778899999999998655
No 5
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=8e-33 Score=320.56 Aligned_cols=245 Identities=24% Similarity=0.377 Sum_probs=202.5
Q ss_pred CCCCHHHHHhhhccCCC---ccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHH
Q psy16313 319 SPLNDTEFRQFLDPVGQ---IIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWK 395 (1018)
Q Consensus 319 pPLteeeW~k~Ld~~Gr---iid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwk 395 (1018)
++.....|.++++..+. .....+++.+++ .|||+.+|+.||.+++|+.+.. ......|..+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~gip~~~r~~vw~~~~~~~~~~----------~~~~~~y~~~~~~~~ 247 (496)
T COG5210 179 ELAADKLWISYLDPNPLSFLPVQLSKLRELIR-KGIPNELRGDVWEFLLGIGFDL----------DKNPGLYERLLNLHR 247 (496)
T ss_pred hhHHHHHHHHHHhcccchhhhhhHHHHHHHHH-hcCChHhhhhhHHHHhccchhh----------ccCchHHHHHHHHHH
Confidence 56677888888887665 246789999995 8899999999999999998543 234556766665443
Q ss_pred HhhhccCCCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchH
Q psy16313 396 DLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEA 475 (1018)
Q Consensus 396 s~~~~~~~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEa 475 (1018)
.... .. .....+|++||.||+|.+..|+... ......|+|||.+|+.+||++|||||||+||||||++|..|+
T Consensus 248 ~~~~----~~--~~~~~~i~~Dl~rt~~~~~~f~~~~-s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee 320 (496)
T COG5210 248 EAKI----PT--QEIISQIEKDLSRTFPDNSLFQTEI-SIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEE 320 (496)
T ss_pred hcCC----Cc--HHHHHHHHccccccccccccccCcc-cccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhH
Confidence 2211 11 1356899999999999999998652 233346999999999999999999999999999999999788
Q ss_pred HHHHHHHHHHHHh-h-hcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHH
Q psy16313 476 HAYICFCALMRRL-G-RNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIML 553 (1018)
Q Consensus 476 DAFWcF~~LMer~-~-~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIW 553 (1018)
+|||||++||+.. . ..|..+..|+...+.++..+++..+|+||+||...++...+|+++||+++|.++||++.++|||
T Consensus 321 ~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriw 400 (496)
T COG5210 321 QAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIW 400 (496)
T ss_pred HHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999943 3 5666788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCccccccccCCCCCC
Q psy16313 554 EVMWSSLPPNPPQGELPLYDVKFEPPCD 581 (1018)
Q Consensus 554 Dvfwasl~~~~~~feL~L~~l~fd~il~ 581 (1018)
|++|..+.....++.+.++...-..++.
T Consensus 401 D~lf~eg~~~l~~~~~~~l~~~~~~l~~ 428 (496)
T COG5210 401 DCLFLEGSSMLFQLALAILKLLRDKLLK 428 (496)
T ss_pred HHHHHhccHHHHHHHHHHHHhhhhhhhc
Confidence 9999999887766666666655555433
No 6
>KOG2224|consensus
Probab=100.00 E-value=3.8e-33 Score=306.95 Aligned_cols=243 Identities=34% Similarity=0.596 Sum_probs=204.4
Q ss_pred CCCHHHHHh-hhccCCCccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHH-Hh
Q psy16313 320 PLNDTEFRQ-FLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWK-DL 397 (1018)
Q Consensus 320 PLteeeW~k-~Ld~~Griid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwk-s~ 397 (1018)
.++...|-. .+++.|++.+--+||+.||.|||..++|+.||++||.+|...+|.++|...+..++++|+++.++-. +.
T Consensus 404 ki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysm 483 (781)
T KOG2224|consen 404 KIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSM 483 (781)
T ss_pred hhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 566677766 7888899998889999999999999999999999999999999999999999999999998876432 11
Q ss_pred hhccCCCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHH
Q psy16313 398 LKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHA 477 (1018)
Q Consensus 398 ~~~~~~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDA 477 (1018)
.++ +.-.-++.+.-.++|||.||+++++||.|. ++++.+.++|||..||.|||.+||.|||++++||+|.-..+|.++
T Consensus 484 spe-eh~~fwknvq~tvdkdvvrtdrnn~ff~gd-dnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqneset 561 (781)
T KOG2224|consen 484 SPE-EHIAFWKNVQFTVDKDVVRTDRNNPFFCGD-DNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESET 561 (781)
T ss_pred CHH-HHHHHHhheEEEEecceeeccCCCCcccCC-CCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccch
Confidence 111 111223334456899999999999999996 689999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHhh--------------------------hccc--CCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCc-
Q psy16313 478 YICFCALMRRLG--------------------------RNFL--VDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADD- 528 (1018)
Q Consensus 478 FWcF~~LMer~~--------------------------~nF~--~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p- 528 (1018)
||||+.||..+. ..|. .....|...+..+.+|++...|.+|+||.++|-+.
T Consensus 562 fwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~l 641 (781)
T KOG2224|consen 562 FWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGL 641 (781)
T ss_pred hhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchh
Confidence 888888887431 1111 22345777888999999999999999999998664
Q ss_pred -ccchHHHHHHHcCCCCChHHHHHHHHHHhhcCCCCC
Q psy16313 529 -LLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNP 564 (1018)
Q Consensus 529 -~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~~~~ 564 (1018)
++||.||++++|+|+||-..++|||+..|+++..+-
T Consensus 642 ellfchrwlllcfkref~ea~airiweacwa~y~tdy 678 (781)
T KOG2224|consen 642 ELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYLTDY 678 (781)
T ss_pred hHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhHHH
Confidence 689999999999999999999999999999987553
No 7
>KOG2197|consensus
Probab=99.97 E-value=7.1e-31 Score=303.25 Aligned_cols=246 Identities=34% Similarity=0.628 Sum_probs=221.0
Q ss_pred CCCCCCCHHHHHhhhccCCCccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHH
Q psy16313 316 PPRSPLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWK 395 (1018)
Q Consensus 316 ~~kpPLteeeW~k~Ld~~Griid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwk 395 (1018)
.+.|.++.++|......++++......+..++++|+-+.+|+.+|+.++++++++.+..++...... ...|.+++.+|.
T Consensus 143 ~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~ 221 (488)
T KOG2197|consen 143 NRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWS 221 (488)
T ss_pred CCCCcchhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhhe
Confidence 4556689999999998888887666666688889998899999999999999999998887777666 889999999998
Q ss_pred HhhhccCC-CCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCch
Q psy16313 396 DLLKRGQM-VGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNE 474 (1018)
Q Consensus 396 s~~~~~~~-~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dE 474 (1018)
.....+.. ..........|.+||.||++.+.+|.+.++ ++...|.+||.+|+.+|+++||||||+++++|++.++++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n-~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de 300 (488)
T KOG2197|consen 222 STSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEEN-PHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDE 300 (488)
T ss_pred eccccccccccchhhhhhhhhhhccccchhhhhhhcccc-cCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCc
Confidence 76654221 111334557899999999999999998754 7799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHH
Q psy16313 475 AHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLE 554 (1018)
Q Consensus 475 aDAFWcF~~LMer~~~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWD 554 (1018)
++|||||+.+|++..++|..++.+|..++..+..+++..||.||+||++.+.+..+||+||++.+|.|||.++++++||+
T Consensus 301 ~~aFwcFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWE 380 (488)
T KOG2197|consen 301 VEAFWCFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWE 380 (488)
T ss_pred hHHHHHHHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCC
Q psy16313 555 VMWSSLPPN 563 (1018)
Q Consensus 555 vfwasl~~~ 563 (1018)
++|+..++.
T Consensus 381 vlw~~~~~~ 389 (488)
T KOG2197|consen 381 VLWTDLPSP 389 (488)
T ss_pred HHHhcCccc
Confidence 999998776
No 8
>KOG1092|consensus
Probab=99.96 E-value=2.6e-30 Score=286.37 Aligned_cols=216 Identities=24% Similarity=0.434 Sum_probs=193.7
Q ss_pred CccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCchHHHHhHh
Q psy16313 335 QIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMV 414 (1018)
Q Consensus 335 riid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~~~~Dl~~i~~qI 414 (1018)
..++.++||+.+ ++|||..+|+.+|++|+|+.|.+.. -|...++.++.+|..++.++......+ ++-....+||
T Consensus 174 ~~id~~~Lr~l~-w~Gvp~~~Rp~~Wkll~gylp~n~~--rr~~~l~~Kr~eY~~~v~~~~~~~~~~---~~~~d~~rQI 247 (484)
T KOG1092|consen 174 PIIDLEKLRKLC-WNGVPSKMRPIVWKLLSGYLPPNSD--RREGTLQRKRKEYVDSVVQYFDSLTNG---DEDQDTWRQI 247 (484)
T ss_pred ccccHHHHHHHc-cCCCCccccCccceeeecccCcchh--hhhhhHHHHHHHHHHHHHHHhccCCCc---cccCcccccc
Confidence 456889999999 5999999999999999999998754 455788999999999998876553321 1112245899
Q ss_pred hhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhc-----------------------
Q psy16313 415 RKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTM----------------------- 471 (1018)
Q Consensus 415 eKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm----------------------- 471 (1018)
..|+.||.|..++|.. ...++.|.|||+.+|.+||-.||+||.|+++.|++.++
T Consensus 248 ~id~prm~p~~~l~q~---~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~ 324 (484)
T KOG1092|consen 248 PIDIPRMNPHIPLFQQ---KIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAEN 324 (484)
T ss_pred ccCCCCCCccccchhh---HHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHH
Confidence 9999999999999995 37889999999999999999999999999999998775
Q ss_pred --CchHHHHHHHHHHHHHhhhcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHH
Q psy16313 472 --SNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDA 549 (1018)
Q Consensus 472 --~dEaDAFWcF~~LMer~~~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedV 549 (1018)
.-|+|||||+..|++.+.+||...++|+..+...|+.|++..|+.|++||+++|++-..|+|||+-|||.||||+..+
T Consensus 325 ~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~ 404 (484)
T KOG1092|consen 325 AEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCT 404 (484)
T ss_pred HhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhH
Confidence 248999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q psy16313 550 LIMLEVMWSS 559 (1018)
Q Consensus 550 LRIWDvfwas 559 (1018)
+||||.+++.
T Consensus 405 iRlWDTY~aE 414 (484)
T KOG1092|consen 405 IRLWDTYLAE 414 (484)
T ss_pred HHHHHHhhcC
Confidence 9999999997
No 9
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.96 E-value=3.2e-30 Score=261.92 Aligned_cols=148 Identities=29% Similarity=0.498 Sum_probs=127.8
Q ss_pred HHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHHHHHHHHHhh
Q psy16313 410 VTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLG 489 (1018)
Q Consensus 410 i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWcF~~LMer~~ 489 (1018)
..++|++||.||+++...+. ...++..|.+||.+|+.++|++||||||++|++++++++.+|++|||||+++|....
T Consensus 46 ~~~~I~~Dv~rt~~~~~~~~---~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~ 122 (214)
T PF00566_consen 46 IFEQIDKDVNRTFPNSFLFK---NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYL 122 (214)
T ss_dssp CHHHHHHHHCTSSTSCCCST---THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHG
T ss_pred HHHHHHHhhhhhcccchhhh---hcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccc
Confidence 35799999999999655554 358899999999999999999999999999999999888899999999999994444
Q ss_pred -hcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcCC
Q psy16313 490 -RNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLP 561 (1018)
Q Consensus 490 -~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~ 561 (1018)
..|..+..++...+..++.+|+.++|+|++||++.|+++..|+++||+++|++++|++.++||||+++ .+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD~l~-~g~ 194 (214)
T PF00566_consen 123 PDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWDFLL-EGY 194 (214)
T ss_dssp GGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHHHHH-HCT
T ss_pred cccccccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHHHHH-cCC
Confidence 44445557788888899999999999999999999999999999999999999999999999999555 544
No 10
>KOG2222|consensus
Probab=99.93 E-value=5.9e-26 Score=252.71 Aligned_cols=219 Identities=19% Similarity=0.311 Sum_probs=182.5
Q ss_pred cCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCchHHHHhHhhh
Q psy16313 337 IQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRK 416 (1018)
Q Consensus 337 id~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~~~~Dl~~i~~qIeK 416 (1018)
...++++.++..||||+++|..+|+-|.|.... .+.....|+..+.+.. .|.-.+..||++
T Consensus 157 ~ktdk~~~llkeggiphslr~~lw~rlsga~~k----------kk~ae~sy~~ilk~~a---------ndk~~~~~qiek 217 (848)
T KOG2222|consen 157 LKTDKFEELLKEGGIPHSLRAFLWMRLSGALAK----------KKDAETSYEDILKACA---------NDKLMIGKQIEK 217 (848)
T ss_pred cchHHHHHHHHcCCCCcchhHHHHHHhhhhhhh----------hccccccHHHHHHHhc---------ccccchhHHHHH
Confidence 456899999988999999999999999998621 1222345777665432 122235579999
Q ss_pred hcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHHHHHHHHHhh-hcccC-
Q psy16313 417 DVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLG-RNFLV- 494 (1018)
Q Consensus 417 DV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWcF~~LMer~~-~nF~~- 494 (1018)
|+.|+.|++..|... ++.+...|+|||+..|+..|++||||||.-|+|.||++|.+| .|||++..+++.+. ++||.
T Consensus 218 dllr~lpnn~cf~k~-n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~ee-~afwmmaaiiedilp~nfysq 295 (848)
T KOG2222|consen 218 DLLRILPNNACFSKK-NGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCEEE-NAFWMMAAIIEDILPANFYSQ 295 (848)
T ss_pred HHHHhCCCcceeeCC-CCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhcch-hHHHHHHHHHHHhcCchhhhh
Confidence 999999999999876 568999999999999999999999999999999999999766 99999999999987 67774
Q ss_pred CChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcCCCCCCCCccccccc
Q psy16313 495 DGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDV 574 (1018)
Q Consensus 495 d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~~~~~~feL~L~~l 574 (1018)
...|+...-.+...|++.+.|.|-+.|+.+++...+.+..||+|+|...|..-..+||||.||.++-...++.-+.++.+
T Consensus 296 tllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~i~ilkm 375 (848)
T KOG2222|consen 296 TLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLIIGILKM 375 (848)
T ss_pred hHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHHHHHHHh
Confidence 34566666668889999999999999999999999999999999999999999999999999988766655555555555
Q ss_pred cC
Q psy16313 575 KF 576 (1018)
Q Consensus 575 ~f 576 (1018)
.-
T Consensus 376 ke 377 (848)
T KOG2222|consen 376 KE 377 (848)
T ss_pred hH
Confidence 33
No 11
>KOG4347|consensus
Probab=99.92 E-value=4.3e-26 Score=263.20 Aligned_cols=250 Identities=18% Similarity=0.215 Sum_probs=215.8
Q ss_pred HHHHHhhhccCCCccC---HHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy16313 323 DTEFRQFLDPVGQIIQ---SRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLK 399 (1018)
Q Consensus 323 eeeW~k~Ld~~Griid---~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~ 399 (1018)
...|.+++...|+-.+ ..++++.++ .|||...|+++|.++.|.. ..+..+.++|.++.+....
T Consensus 173 ~k~W~~~f~~~G~~~~~~qt~~~~Klv~-~gipe~~rgeiW~l~sGav----------~~~l~~~Geygkll~~~~G--- 238 (671)
T KOG4347|consen 173 EKFWKKYFIKDGPNMNQIQTILLRKLLY-NGFPEDPRGEIWYLASGAV----------ASLLLNPGEYGKLLHSVTG--- 238 (671)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHH-HhcCCChHHHHHHhhhHHH----------HHhhcCcHHhhhhhhcccC---
Confidence 4569999988887654 578999996 9999999999999999975 3455678899988865321
Q ss_pred ccCCCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHH
Q psy16313 400 RGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYI 479 (1018)
Q Consensus 400 ~~~~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFW 479 (1018)
......+.|++|+.|..|+|+-|+.+ ++...|+|||.|||+.||+|||||-||-+++.+|+++.+| .|||
T Consensus 239 ------~~~~a~eEIE~Dl~rsLpEhpA~Q~e---~gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~EE-eafw 308 (671)
T KOG4347|consen 239 ------KRSVATEEIEPDLGRSLPEHPAFQSE---PGIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCKEE-EAFW 308 (671)
T ss_pred ------CcccccccccCCCCCCCCcchhhhCC---CchhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhccc-hHHH
Confidence 11223467999999999999999964 7899999999999999999999999999999999999777 9999
Q ss_pred HHHHHHHHhhhcccC-CChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhh
Q psy16313 480 CFCALMRRLGRNFLV-DGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWS 558 (1018)
Q Consensus 480 cF~~LMer~~~nF~~-d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwa 558 (1018)
+++.+++.+.+.|+. ...|......+++.|++.+.|.|++|+...+ ...+....||+++|...+|++..+||.|+||-
T Consensus 309 ll~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~ 387 (671)
T KOG4347|consen 309 LLSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFY 387 (671)
T ss_pred HHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhh
Confidence 999999999988884 4556677777899999999999999999999 77789999999999999999999999999999
Q ss_pred cCCCCCCCCccccccccCCCCCCCCCCCCCCCCcccccc
Q psy16313 559 SLPPNPPQGELPLYDVKFEPPCDPAPNSPSPSPRENQYT 597 (1018)
Q Consensus 559 sl~~~~~~feL~L~~l~fd~il~a~~~S~~~~l~eN~f~ 597 (1018)
.|+-..++.++++++.+-+.||.+.++...-.++.|-|.
T Consensus 388 eG~rvlFqiaLail~~N~~~il~~~dDge~~~vl~~y~~ 426 (671)
T KOG4347|consen 388 EGPRVLFQIALAILKQNAERILSATDDGEAMMVLGNYFD 426 (671)
T ss_pred cccHHHHHHHHHHHHhhHHHhcccCCchHHHHHHHHHHH
Confidence 999999999999999999999999988877444444433
No 12
>KOG4436|consensus
Probab=99.88 E-value=6.1e-23 Score=240.05 Aligned_cols=237 Identities=22% Similarity=0.332 Sum_probs=192.9
Q ss_pred HHHHHhhhccCCCc---cCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy16313 323 DTEFRQFLDPVGQI---IQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLK 399 (1018)
Q Consensus 323 eeeW~k~Ld~~Gri---id~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~ 399 (1018)
.+.|++++.. +++ .+++.+-..+ +.|||.+-|+.+|.++.--+..+.-... ..+...--|+.+..+..
T Consensus 549 ~~~wek~~e~-~~~~~k~d~ed~~~~l-~~gvprsrrgeiwtflA~q~~~~~~l~~---~kr~~~~p~~~llkqLt---- 619 (948)
T KOG4436|consen 549 IETWEKILER-TRIKIKKDMEDLHSAL-RTGVPRSRRGEIWTFLAEQHSLNHALPD---KKRPPDFPYKELLKQLT---- 619 (948)
T ss_pred HHHHHHHHHH-hhhcccccHHHHHHHH-HccCchhhhHHHHHHHHHHHHHhccCCc---ccCCCCCChHHHHHHHH----
Confidence 4679999877 444 3788999888 5999999999999998633211100000 00000012333333321
Q ss_pred ccCCCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHH
Q psy16313 400 RGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYI 479 (1018)
Q Consensus 400 ~~~~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFW 479 (1018)
+....|..|+-||||+|++|... -+.++..|+|+|.+|+..+|++|||||..++|++||+.|.+| .||-
T Consensus 620 ---------e~qhAi~idlgrtfp~h~~~~~q-lg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~e~-~afe 688 (948)
T KOG4436|consen 620 ---------EQQHAILIDLGRTFPTHPYFSDQ-LGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMSEE-NAFE 688 (948)
T ss_pred ---------HHHHHHHHhhccccCCCHHHHhh-ccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcchh-hHHH
Confidence 22357999999999999999965 468899999999999999999999999999999999999655 9999
Q ss_pred HHHHHHHHhh--hcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHh
Q psy16313 480 CFCALMRRLG--RNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMW 557 (1018)
Q Consensus 480 cF~~LMer~~--~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfw 557 (1018)
++..||-... ..|..++..+..+++++.++++.+.+.||+||++++|.|.+|+.+||+++|+.-||...+.|++|.+|
T Consensus 689 llk~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~f 768 (948)
T KOG4436|consen 689 LLKFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIF 768 (948)
T ss_pred HHHHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHH
Confidence 9999998654 78888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCccccccccCCCC
Q psy16313 558 SSLPPNPPQGELPLYDVKFEPP 579 (1018)
Q Consensus 558 asl~~~~~~feL~L~~l~fd~i 579 (1018)
-.+-...+.+.+.|+..+-..|
T Consensus 769 lq~tevifK~a~~llsv~k~~l 790 (948)
T KOG4436|consen 769 LQGTEVIFKVALSLLSVHKQLL 790 (948)
T ss_pred hhccchhhhhHHHHHHhhHHHH
Confidence 9988888888888888765544
No 13
>KOG1102|consensus
Probab=99.85 E-value=6.6e-22 Score=224.56 Aligned_cols=217 Identities=24% Similarity=0.377 Sum_probs=170.4
Q ss_pred cCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCchHHHHhHhhh
Q psy16313 337 IQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRK 416 (1018)
Q Consensus 337 id~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~~~~Dl~~i~~qIeK 416 (1018)
....++...+. .|||..+|+.+|..+++.-- ........++ ...++. . ....+ ..+| +
T Consensus 133 ~~~~~l~~~~~-~gip~~~r~~~W~l~~~~~~---------~~~~~~~~~l--~~~~~~----~-~~~~~----~~~~-~ 190 (397)
T KOG1102|consen 133 RRPLKLSRRVL-VGIPDELRGLVWQLLLYAVE---------ESLFDSLDEL--YRLQLD----E-PEPHE----SEII-R 190 (397)
T ss_pred ccHHHHHHHhh-ccccHHHHHHHHHHhcccHh---------hhhhhhHHHH--HHHhhc----c-CCCch----hHHH-h
Confidence 35678888884 99999999999999998620 0000000111 111110 0 11222 2456 9
Q ss_pred hcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHHHHHHHHHhh-hcccCC
Q psy16313 417 DVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLG-RNFLVD 495 (1018)
Q Consensus 417 DV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWcF~~LMer~~-~nF~~d 495 (1018)
|+.||||.+..|... -+.++.+|++||.+|+.++|++||||||..+|++++.++. |++|||.++.+|.... +.|...
T Consensus 191 d~~Rt~~~~~~f~~~-~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~lv~l~~~~~~~~~~~~ 268 (397)
T KOG1102|consen 191 DLSRTFPAHLLFRKR-YGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPLLVKLMKNYGLDLLSPG 268 (397)
T ss_pred hccCcCcchhhhhhh-cCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-hhhhhhhhhhhhhccchhccccc
Confidence 999999999999974 4688999999999999999999999999999999999998 5599999999999885 444344
Q ss_pred ChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcCCCCCCCCcccccccc
Q psy16313 496 GITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVK 575 (1018)
Q Consensus 496 ~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~~~~~~feL~L~~l~ 575 (1018)
..++...+.++..+++...|.++.|+...++...+|+.+|++++|...+|++.++|+||+++..+......+.++++...
T Consensus 269 ~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i~~~~~~~l~~~~ 348 (397)
T KOG1102|consen 269 FSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSILFRFSLALLKHK 348 (397)
T ss_pred CCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHHHHHHHHHHhhhh
Confidence 55677778899999999999999999999999999999999999999999999999999999988555555555555443
Q ss_pred CC
Q psy16313 576 FE 577 (1018)
Q Consensus 576 fd 577 (1018)
-+
T Consensus 349 ~~ 350 (397)
T KOG1102|consen 349 AD 350 (397)
T ss_pred hH
Confidence 33
No 14
>KOG1093|consensus
Probab=99.83 E-value=1.1e-20 Score=215.76 Aligned_cols=257 Identities=16% Similarity=0.278 Sum_probs=195.8
Q ss_pred HHHHhhhccCCCccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccCC
Q psy16313 324 TEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQM 403 (1018)
Q Consensus 324 eeW~k~Ld~~Griid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~~ 403 (1018)
..+..+++ |-......+.+.. ++|+|+-+|+.+|..|||+.- + ....|..+ .++.+
T Consensus 332 ~~~d~Ll~--g~~~k~~qI~r~a-~vdvpp~~R~~iW~aLL~l~e-~------------~~a~y~~I--------Dk~Ts 387 (725)
T KOG1093|consen 332 LLFDRLLD--GYPKKRLQILREA-YVDVPPLYRGFIWAALLQLEE-N------------HTAFYTLI--------DKGTS 387 (725)
T ss_pred HHHHHhhc--cchHHHHHHHHHh-ccCCChhHhHHHHHHHhcCcc-c------------cchhhhhh--------hcCCC
Confidence 34444554 2223344555555 499999999999999998852 1 11223222 12222
Q ss_pred CCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhh-cCchHHHHHHHH
Q psy16313 404 VGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVT-MSNEAHAYICFC 482 (1018)
Q Consensus 404 ~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlV-m~dEaDAFWcF~ 482 (1018)
.. ...||+.|++|.......... ..+.+.|+|+|.||+..+|...|.||+..+|+|||+. +++|+-||-|+.
T Consensus 388 ~~----tdrqievdiprchQyd~~lsS---p~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~ 460 (725)
T KOG1093|consen 388 HS----TDRQIEVDIPRCHQYDELLSS---PKGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIA 460 (725)
T ss_pred Cc----chhhhhcccchhhhcccccCC---HHHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHH
Confidence 21 236899999999887777664 4789999999999999999999999999999998754 688999999999
Q ss_pred HHHHHhhhccc-CCC-hHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcC
Q psy16313 483 ALMRRLGRNFL-VDG-ITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSL 560 (1018)
Q Consensus 483 ~LMer~~~nF~-~d~-~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl 560 (1018)
.++-+++.+|+ .|. ..+...+..|..++..+||+|++||..+|+.+.+|+..||+|+|+++||.+..+.+||.++.+.
T Consensus 461 ~fi~kycq~fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~ 540 (725)
T KOG1093|consen 461 TFIPKYCQHFFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGH 540 (725)
T ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence 99999997666 434 4566678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCcccccccchhhhhcccccccCCccccCCCCchhHHHhhhhc
Q psy16313 561 PPNPPQGELPLYDVKFEPPCDPAPNSPSPSPRENQYTKVCAIRRQTTSATSSPFKLNATLDESPLAQRRKQD 632 (1018)
Q Consensus 561 ~~~~~~feL~L~~l~fd~il~a~~~S~~~~l~eN~f~svc~ir~qsss~~l~~l~~n~slde~~~~~~~~~~ 632 (1018)
.+++.--+++++.. ....++.+.|+ .|.+.- +|+- +++.|..|.....-..
T Consensus 541 ~SFplmi~vAil~~------------lR~~LLa~nfn-e~illf-------~d~p-dldId~~Ires~~l~e 591 (725)
T KOG1093|consen 541 SSFPLMIGVAILIQ------------LRDPLLACNFN-ECILLF-------SDLP-DLDIDVCIRESYHLME 591 (725)
T ss_pred CccHHHHHHHHHHH------------hhhhhhhCCch-hheeee-------ccCC-cccHHHHHHHHhhhhh
Confidence 88876545543333 22335566664 565544 5665 8888888877665443
No 15
>KOG2221|consensus
Probab=99.83 E-value=1e-21 Score=203.90 Aligned_cols=190 Identities=23% Similarity=0.435 Sum_probs=158.7
Q ss_pred HHHHHhhhccCCCcc--CHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q psy16313 323 DTEFRQFLDPVGQII--QSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKR 400 (1018)
Q Consensus 323 eeeW~k~Ld~~Grii--d~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~ 400 (1018)
+.+|-.++++|.... .-++++..| ++|||+++|+..|++|.|.+... .+++..|..+..
T Consensus 75 eskwL~mldnw~~~m~kk~~~ir~rc-rkgippslr~Raw~ylsGa~~~~----------~~np~~~~~~~~-------- 135 (267)
T KOG2221|consen 75 ESKWLHMLDNWHEEMRKKQKKIRPRC-RKGIPPSLRGRAWRYLSGAPSPP----------PKNPVVFDELGP-------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHhccccccchh-hcCCCcccchhHHHhhcCCCCCC----------CCCcchhhhccC--------
Confidence 688999999886432 346789998 59999999999999999987322 224445544431
Q ss_pred cCCCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHH
Q psy16313 401 GQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYIC 480 (1018)
Q Consensus 401 ~~~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWc 480 (1018)
.+++.. ..+-|++|++|.||.|.+|... +..+++.|+|+|.+|..++|+.||||+-.-||+++|+.|+.| +||||
T Consensus 136 --~pG~p~-t~e~i~kdl~rqfp~hemf~s~-~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp~r-daf~~ 210 (267)
T KOG2221|consen 136 --APGDPK-TAEGIHKDLHRQFPFHEMFGSS-GKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMPAR-DAFWC 210 (267)
T ss_pred --CCCCCc-chhhhccccccCCCcccccccc-cccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcccHH-HHHHH
Confidence 222221 3467999999999999999975 567899999999999999999999999999999999999887 99999
Q ss_pred HHHHHHHhhhcccCCChH-HHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHH
Q psy16313 481 FCALMRRLGRNFLVDGIT-MTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWL 536 (1018)
Q Consensus 481 F~~LMer~~~nF~~d~~g-m~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWF 536 (1018)
|+.+++.+.+.|+..+.. +...-.+|..|++..+|..|.||...++++.+|...||
T Consensus 211 ~vqicekylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 211 FVQICEKYLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 999999999999877654 44456699999999999999999999999999999997
No 16
>KOG1091|consensus
Probab=99.81 E-value=5e-20 Score=210.56 Aligned_cols=204 Identities=26% Similarity=0.323 Sum_probs=151.3
Q ss_pred hhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhc--cCCCCc--------------------hHHHH
Q psy16313 354 SLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKR--GQMVGD--------------------LAYVT 411 (1018)
Q Consensus 354 sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~--~~~~~D--------------------l~~i~ 411 (1018)
.+|+.+|+++||+.|.+.+ .|...+++.+..|..++..+...... +....+ ..+..
T Consensus 28 ~~Rgv~Wrl~L~vLp~~~s--s~id~~~~~ra~~r~~r~~~L~dPh~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL~ 105 (625)
T KOG1091|consen 28 NLRGVRWRLLLGVLPSENS--SWIDNLRRLRANYRRLRRRLLIDPHNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAELE 105 (625)
T ss_pred hhhhHHHHHhheecCCCch--hHHHHHHHHhhhhhccccccccCccccccccCCCcccCCccccCCCchhhhhcCcHHHH
Confidence 3799999999999987644 45577788888888875543221110 000000 13467
Q ss_pred hHhhhhcccccccc-cccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcC------------------
Q psy16313 412 GMVRKDVLRTDRHH-VFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMS------------------ 472 (1018)
Q Consensus 412 ~qIeKDV~RTfp~~-~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~------------------ 472 (1018)
+.|.+||.||||.+ .||+. ...+..|++||..||.-||.+||-|||++|.||+++|..
T Consensus 106 ~~i~qDvsRtfPe~~~fFqs---~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~ 182 (625)
T KOG1091|consen 106 KTIDQDVSRTFPEHSLFFQS---PEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLG 182 (625)
T ss_pred HhhcchhhccCcchhhhhcC---chhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcC
Confidence 89999999999999 66764 368899999999999999999999999999999999872
Q ss_pred -chH-----------HHH--HHHHHHHHHhhhccc------C------------------CChHHHHHHHHHHHHHHhhC
Q psy16313 473 -NEA-----------HAY--ICFCALMRRLGRNFL------V------------------DGITMTQRFQHLADGLEYYH 514 (1018)
Q Consensus 473 -dEa-----------DAF--WcF~~LMer~~~nF~------~------------------d~~gm~~~L~vLe~LLk~~D 514 (1018)
+|. +++ -+|+.+|......|. . .-..+......+..+|...|
T Consensus 183 f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D 262 (625)
T KOG1091|consen 183 FEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVD 262 (625)
T ss_pred cchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhcc
Confidence 122 223 245555543221111 0 01124445567889999999
Q ss_pred HHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHH-HHhhcCCC
Q psy16313 515 PKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLE-VMWSSLPP 562 (1018)
Q Consensus 515 PeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWD-vfwasl~~ 562 (1018)
+.|+.||.+.|+.|.+|..||+..||-||||+.++|.+|| +++.+.+.
T Consensus 263 ~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr 311 (625)
T KOG1091|consen 263 KSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPR 311 (625)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCch
Confidence 9999999999999999999999999999999999999999 76666543
No 17
>KOG2595|consensus
Probab=99.60 E-value=1.7e-15 Score=165.98 Aligned_cols=199 Identities=19% Similarity=0.254 Sum_probs=149.9
Q ss_pred cCHHHHHHHHHhC-C-CCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCchHHHHhHh
Q psy16313 337 IQSRELRTVIYYG-G-IEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMV 414 (1018)
Q Consensus 337 id~ekLR~lI~rg-G-IP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~~~~Dl~~i~~qI 414 (1018)
.+.+.||...... | +.+++|+.||..|+|..-..... ..|.... +.+.| .+|+
T Consensus 46 ~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~~-----------~~~~~~~----------q~hkd----~nQV 100 (395)
T KOG2595|consen 46 KDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLDA-----------TSTLTPV----------QKHKD----YNQV 100 (395)
T ss_pred ccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCcc-----------cccCChh----------hhCcc----cceE
Confidence 4667788776432 2 57899999999999975222111 1111111 12223 2589
Q ss_pred hhhcccccccccc---cccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHHHHHHHHHhhhc
Q psy16313 415 RKDVLRTDRHHVF---YAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRN 491 (1018)
Q Consensus 415 eKDV~RTfp~~~f---F~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWcF~~LMer~~~n 491 (1018)
..||.|++...+- +.. ....+..|..++...-..+|.+.|.||.+|||..+|+++.+ .+|+-+...|-.....+
T Consensus 101 ~LDv~RSl~rfppg~p~~~--R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~gE-~~Al~l~E~L~~~~lrd 177 (395)
T KOG2595|consen 101 ILDVERSLGRFPPGIPKEL--RLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVGE-LEALSLMEELSTLHLRD 177 (395)
T ss_pred EEehhhhhccCCCCCCHHH--HHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhhh-HhhhHHHHHHHHHHHHH
Confidence 9999999765442 111 12456677777777777899999999999999999999974 49998888887766666
Q ss_pred ccC-CChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCC-hHHHHHHHHHHhhcCCCCC
Q psy16313 492 FLV-DGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFA-FNDALIMLEVMWSSLPPNP 564 (1018)
Q Consensus 492 F~~-d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefP-fedVLRIWDvfwasl~~~~ 564 (1018)
|+. ...+...++..+..+++..+|+||+.|++..+++ +|+..|++|||++.+. +..++|++|+|.++.+-.+
T Consensus 178 fM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~p 251 (395)
T KOG2595|consen 178 FMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLP 251 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchh
Confidence 663 4455677888999999999999999999998876 7999999999999996 8999999999999887644
No 18
>KOG4436|consensus
Probab=99.42 E-value=3.4e-13 Score=159.42 Aligned_cols=217 Identities=18% Similarity=0.226 Sum_probs=172.6
Q ss_pred cCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCchHHHHhHhhh
Q psy16313 337 IQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRK 416 (1018)
Q Consensus 337 id~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~~~~Dl~~i~~qIeK 416 (1018)
....+|+.+| .+|+|+..|-.+|++|+.... . + .....+.|.+++..- ...+-..+...|.+
T Consensus 172 ~s~~~l~e~V-e~~~p~~frli~~qlLssatd--~---~----q~~I~e~~sdl~~~s--------~~~Ek~~~~~~Irr 233 (948)
T KOG4436|consen 172 KSLHKLKELV-EGGIPMHFRLIRWQLLSSATD--R---E----QALIFEDYSDLAPCS--------SQQEKELHIGIIRR 233 (948)
T ss_pred hchhhhHHHH-hcCCchHHHHHHHHHhccccc--c---h----hhHHHHHHHHHhhhc--------chhhhhHHHHHHHH
Confidence 3568899999 599999999999999987641 1 1 011234455554321 11112234568999
Q ss_pred hcccccccccccccCCcc------hhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHHHHHHHHHhh-
Q psy16313 417 DVLRTDRHHVFYAGADDN------CNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLG- 489 (1018)
Q Consensus 417 DV~RTfp~~~fF~g~ddn------~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWcF~~LMer~~- 489 (1018)
|+.||.|.|.+|++.+.. -+++.|+|+..+|....-++|||||=+++++.+++.|+.| .+|..++.+|..++
T Consensus 234 di~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~~E-~assv~~~lm~~~rl 312 (948)
T KOG4436|consen 234 DIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMPVE-EASSVKVQLMILYRL 312 (948)
T ss_pred HhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCcHH-HHHHHHHHHHHhhcc
Confidence 999999999999975311 2589999999999999999999999999999999999877 99999999999876
Q ss_pred -hcccCCChHHHHHHHHHHHHHHhhCH-HHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcCCCCCCCC
Q psy16313 490 -RNFLVDGITMTQRFQHLADGLEYYHP-KFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQG 567 (1018)
Q Consensus 490 -~nF~~d~~gm~~~L~vLe~LLk~~DP-eLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~~~~~~f 567 (1018)
..+...+..+...+..++...+...| .++.|+.+.+++..+|...||++.|...||+...-|+.|.|-..++...++.
T Consensus 313 ~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk~fr~ 392 (948)
T KOG4436|consen 313 RELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGLLKRFRD 392 (948)
T ss_pred cccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccHHHHHhh
Confidence 45555666677678899999999999 9999999999999999999999999999999999999998877766554444
Q ss_pred ccccc
Q psy16313 568 ELPLY 572 (1018)
Q Consensus 568 eL~L~ 572 (1018)
.+++.
T Consensus 393 ~ia~~ 397 (948)
T KOG4436|consen 393 SIAYL 397 (948)
T ss_pred hHHHH
Confidence 44333
No 19
>KOG2197|consensus
Probab=98.83 E-value=7.5e-10 Score=129.63 Aligned_cols=56 Identities=38% Similarity=0.679 Sum_probs=51.9
Q ss_pred cccccCCCCeeehhHHHHHHhhcccChhHHHHHHHHHhhcCCCCCCCccccccccc
Q psy16313 2 VLEKEKADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVK 57 (1018)
Q Consensus 2 ~l~~~~~~~l~F~~r~lL~~fkref~~~d~~~lwE~~w~~~~~~~~~~~~~l~~~~ 57 (1018)
||++.|++|+||||||+++||||||.++|++.|||++|+.+++.+|+..++.+--.
T Consensus 346 hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~~~~~l~ 401 (488)
T KOG2197|consen 346 HLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYVAPAILN 401 (488)
T ss_pred hccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHHHHhhhh
Confidence 89999999999999999999999999999999999999999999888877766544
No 20
>KOG3636|consensus
Probab=98.81 E-value=1.1e-08 Score=115.96 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=111.3
Q ss_pred hHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCcccc--CchhhHHHHHhhcCchHHHHHHHHHHHHHhh
Q psy16313 412 GMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQ--GMSDLASPLLVTMSNEAHAYICFCALMRRLG 489 (1018)
Q Consensus 412 ~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQ--GMNdIAApLLlVm~dEaDAFWcF~~LMer~~ 489 (1018)
.+|++|..|---.... ..++..+....|..++.-||. +..+.|.. |.-.|+-||+..--.-++.|-||.++++.+.
T Consensus 68 ~~lr~DC~~~~d~l~n-~ee~~v~vv~dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYI 145 (669)
T KOG3636|consen 68 CALRNDCRKLADGLKN-KEEDKVPVVSDLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYI 145 (669)
T ss_pred hHHHHHHHHHHhhcCC-chhhccchhHhhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhccc
Confidence 3566776655322211 111123455678899999987 44556664 4457788887776667799999999999987
Q ss_pred hcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcCCCCCC
Q psy16313 490 RNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPP 565 (1018)
Q Consensus 490 ~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~~~~~ 565 (1018)
+.=... -..-|..|.-||++|+|+|..||....+.|.+|+..||-+||+.+.+.+.+.-+||.++-..-++..
T Consensus 146 Pkdcrp---kg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~v 218 (669)
T KOG3636|consen 146 PKDCRP---KGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLV 218 (669)
T ss_pred CCCCCC---CCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceeh
Confidence 533321 1223567888999999999999999999999999999999999999999999999999987765543
No 21
>KOG2224|consensus
Probab=98.76 E-value=1.1e-09 Score=123.00 Aligned_cols=50 Identities=32% Similarity=0.522 Sum_probs=47.2
Q ss_pred CCCCeeehhHHHHHHhhcccChhHHHHHHHHHhhcCCCCCCCcccccccc
Q psy16313 7 KADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDV 56 (1018)
Q Consensus 7 ~~~~l~F~~r~lL~~fkref~~~d~~~lwE~~w~~~~~~~~~~~~~l~~~ 56 (1018)
|+..|+|||||||++|||||+-..++++||++|+.|.++-|++|+-||=+
T Consensus 639 d~lellfchrwlllcfkref~ea~airiweacwa~y~tdyfhlficlaii 688 (781)
T KOG2224|consen 639 DGLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYLTDYFHLFICLAII 688 (781)
T ss_pred chhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999987744
No 22
>KOG1648|consensus
Probab=98.70 E-value=6.4e-10 Score=126.53 Aligned_cols=217 Identities=26% Similarity=0.350 Sum_probs=160.5
Q ss_pred CCCHHHHHhhhccCCCccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy16313 320 PLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLK 399 (1018)
Q Consensus 320 PLteeeW~k~Ld~~Griid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~ 399 (1018)
-+++.-|.++..+. .+....-++..+ ++|+....|+.+|+.+++-+..++...+...........|.+....|....
T Consensus 530 glt~~~W~qy~~d~-t~~e~~~l~~~~-~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~~~- 606 (813)
T KOG1648|consen 530 GLTEKFWKQYRADP-TIEEWRVLEAEV-RGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFRAN- 606 (813)
T ss_pred cccHHHHHHHhcCC-chHHHHHHHHHH-hcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHhhh-
Confidence 39999999998653 333334455554 699999999999999999988777766555555566778988877776431
Q ss_pred ccCCCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHH
Q psy16313 400 RGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYI 479 (1018)
Q Consensus 400 ~~~~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFW 479 (1018)
...|+||+.|..++..+|... .++++ +++..+|--.|-+-||.|||.++.+|++..+++|+-+--
T Consensus 607 -----------~~~~~kd~e~~~~~~~~fs~~---~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e 671 (813)
T KOG1648|consen 607 -----------LHRIDKDVERCDRNLMFFSNK---DNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLE 671 (813)
T ss_pred -----------eeeecchhhhCcchheeecCC---cchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccC
Confidence 246999999999999999864 45666 888899999999999999999999999999999888888
Q ss_pred HHHHHHHHhhhcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhc
Q psy16313 480 CFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSS 559 (1018)
Q Consensus 480 cF~~LMer~~~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwas 559 (1018)
||.-+|-+.+..|. ...+|..-+-.+. +++..+|-. .-+... .-..|+||+.-|.++++.+.+..+|+++|+.
T Consensus 672 ~~s~~~~~q~~~~~-q~~~~~~~l~~~r-~~~v~~~l~-s~id~~----qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~ 744 (813)
T KOG1648|consen 672 CFSLLMLRQRGKFP-QRPGMSKCLLNLR-LIQVVDPLI-SDIDYA----QALSFRWFLLDFKRELSYECTYKVWEVIWAA 744 (813)
T ss_pred CCcHHHHHhcccCC-CCCCccccccccc-chhhhcchh-cchhhh----hhcceeeeccCcccccCCCCcceeeEeeccc
Confidence 88888877665553 1222222222222 555566622 112111 2234899999999999999999999999986
Q ss_pred CC
Q psy16313 560 LP 561 (1018)
Q Consensus 560 l~ 561 (1018)
-.
T Consensus 745 ~~ 746 (813)
T KOG1648|consen 745 QR 746 (813)
T ss_pred cc
Confidence 54
No 23
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=97.56 E-value=0.00022 Score=65.18 Aligned_cols=70 Identities=29% Similarity=0.448 Sum_probs=61.8
Q ss_pred CcccccccccCCC-CCcHHHHHHHHHHHhcc-CCCeeEEEEeecCCCCccccccCCchhhHHHhhhcCCCceEeeee
Q psy16313 156 QQSECRKFSVDPQ-ITSYEVLYSLLAKAFDV-RKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRID 230 (1018)
Q Consensus 156 ~~~e~r~f~vdp~-it~~~~l~~~l~~af~~-~~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s~p~l~l~v~ 230 (1018)
...|||.||+|.. .++||.++++|.+.+.| +-+|.|+|-..|.+ -||..+|=++--|+.+| .|.|+|=|-
T Consensus 7 fdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gD----LLPInNDdNf~kAlssa-~plLRl~iq 78 (80)
T cd06403 7 FDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGD----LLPINNDDNFLKALSSA-NPLLRIFIQ 78 (80)
T ss_pred cCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCC----EecccCcHHHHHHHHcC-CCceEEEEE
Confidence 4579999999996 89999999999999999 56799999877433 69999999999999977 999999764
No 24
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=97.21 E-value=0.00093 Score=59.95 Aligned_cols=75 Identities=31% Similarity=0.460 Sum_probs=62.2
Q ss_pred cceecccccccCcccccccccCCCCCcHHHHHHHHHHHhccC-CCeeEEEEeecCCCCccccccCCchhhHHHhhhcC--
Q psy16313 145 SPQQSMKYDGMQQSECRKFSVDPQITSYEVLYSLLAKAFDVR-KEFSICYRVLDDCNQETFLPLLSDYELDAAIQNAS-- 221 (1018)
Q Consensus 145 v~~~~kk~~~~~~~e~r~f~vdp~it~~~~l~~~l~~af~~~-~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s-- 221 (1018)
++||| .| ..+.|.|.|++ -++|+.|.+.+.+.|.+. ..|.|+|+ |+.|. .++|.||=||..|+-.+.
T Consensus 2 ~~vK~-~~----~~~~~~~~~~~-~~s~~dL~~~i~~~~~~~~~~~~l~Y~--Dedgd--~v~l~sd~Dl~~a~~~~~~~ 71 (81)
T smart00666 2 VDVKL-RY----GGETRRLSVPR-DISFEDLRSKVAKRFGLDNQSFTLKYQ--DEDGD--LVSLTSDEDLEEAIEEYDSL 71 (81)
T ss_pred ccEEE-EE----CCEEEEEEECC-CCCHHHHHHHHHHHhCCCCCCeEEEEE--CCCCC--EEEecCHHHHHHHHHHHHHc
Confidence 56666 34 35899999988 556999999999999996 57999999 77787 669999999999999776
Q ss_pred -CCceEeee
Q psy16313 222 -DPCLCLRI 229 (1018)
Q Consensus 222 -~p~l~l~v 229 (1018)
.+.|+|.|
T Consensus 72 ~~~~l~l~v 80 (81)
T smart00666 72 GSKKLRLHV 80 (81)
T ss_pred CCceEEEEe
Confidence 57888765
No 25
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=96.93 E-value=0.0027 Score=59.44 Aligned_cols=81 Identities=26% Similarity=0.383 Sum_probs=65.3
Q ss_pred eecccccccCcccccccccCCCC-CcHHHHHHHHHHHhcc--CCCeeEEEEeecCCCCccccccCCchhhHHHhhhcCCC
Q psy16313 147 QQSMKYDGMQQSECRKFSVDPQI-TSYEVLYSLLAKAFDV--RKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDP 223 (1018)
Q Consensus 147 ~~~kk~~~~~~~e~r~f~vdp~i-t~~~~l~~~l~~af~~--~~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s~p 223 (1018)
||+=.-.+...+|+|.|++|-.. +||+.|+..+++.|.. ..+|+|.|. |..|.. +.+-||=||.-|+.++.+|
T Consensus 3 vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~--DeeGDl--vtIssdeEL~~A~~~~~~~ 78 (87)
T cd06402 3 VKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWK--DEEGDL--VAFSSDEELVMALGSLNDD 78 (87)
T ss_pred EEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEE--CCCCCE--EeecCHHHHHHHHHcCCCC
Confidence 44433345678999999999777 7999999999999954 448999997 555554 5778999999999999999
Q ss_pred ceEeeeec
Q psy16313 224 CLCLRIDF 231 (1018)
Q Consensus 224 ~l~l~v~~ 231 (1018)
.++|=|..
T Consensus 79 ~~RlyI~~ 86 (87)
T cd06402 79 TFRIYIKE 86 (87)
T ss_pred cEEEEEEe
Confidence 99987753
No 26
>KOG2801|consensus
Probab=96.37 E-value=0.0078 Score=66.58 Aligned_cols=213 Identities=15% Similarity=0.161 Sum_probs=127.6
Q ss_pred CHHHHHHHHHhCCC---CchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCchHHHHhHh
Q psy16313 338 QSRELRTVIYYGGI---EPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMV 414 (1018)
Q Consensus 338 d~ekLR~lI~rgGI---P~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~~~~Dl~~i~~qI 414 (1018)
...+|+++.+ .|- .+.+|+.|+..|..-.|...- .-....|..+..+--. +.....-.+. +.+
T Consensus 31 elqelkqlar-qgywaqshalrgkvyqrlirdipcrtv--------tpdasvysdivgkivg--khsssclplp---efv 96 (559)
T KOG2801|consen 31 ELQELKQLAR-QGYWAQSHALRGKVYQRLIRDIPCRTV--------TPDASVYSDIVGKIVG--KHSSSCLPLP---EFV 96 (559)
T ss_pred hHHHHHHHHh-cchHHhhhhhhhHHHHHHHhcCCcccc--------CCchhHHHHHHHHHhc--cCCcccccch---hhc
Confidence 4678888884 664 567999999988876654311 1122345554432110 0000000000 001
Q ss_pred hhhcccc-cccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHHHHHHHHHhhhccc
Q psy16313 415 RKDVLRT-DRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFL 493 (1018)
Q Consensus 415 eKDV~RT-fp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWcF~~LMer~~~nF~ 493 (1018)
..| .|.... +..+....+.||...|...|+|++|..+..+++.+|.+.-+|+++|--.|.++.---++-.
T Consensus 97 ----dntqvpsycl-----nargegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrr 167 (559)
T KOG2801|consen 97 ----DNTQVPSYCL-----NARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRR 167 (559)
T ss_pred ----ccCcCchhhh-----cCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchh
Confidence 111 111111 1245567899999999999999999999999999999998999988766665432211110
Q ss_pred -CCCh--HHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcCCCCCCCCccc
Q psy16313 494 -VDGI--TMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELP 570 (1018)
Q Consensus 494 -~d~~--gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~~~~~~feL~ 570 (1018)
.++. .....+..|..|+..+.-..++.+....-+.......|-.-+| .++|+.-..|++|+|+..+.....+..++
T Consensus 168 lidqsflafesscmtfgdlvnkycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegykvlyrvala 246 (559)
T KOG2801|consen 168 LIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGYKVLYRVALA 246 (559)
T ss_pred hhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecchHHHHHHHHH
Confidence 1111 2222345677777776666666555444444444445655444 68999999999999999887776666665
Q ss_pred cccc
Q psy16313 571 LYDV 574 (1018)
Q Consensus 571 L~~l 574 (1018)
++..
T Consensus 247 ilkf 250 (559)
T KOG2801|consen 247 ILKF 250 (559)
T ss_pred HHHH
Confidence 5543
No 27
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=95.85 E-value=0.027 Score=50.33 Aligned_cols=68 Identities=31% Similarity=0.445 Sum_probs=56.7
Q ss_pred ccccccccCCCCCcHHHHHHHHHHHhccC-CCeeEEEEeecCCCCccccccCCchhhHHHhhhcC---CCceEeee
Q psy16313 158 SECRKFSVDPQITSYEVLYSLLAKAFDVR-KEFSICYRVLDDCNQETFLPLLSDYELDAAIQNAS---DPCLCLRI 229 (1018)
Q Consensus 158 ~e~r~f~vdp~it~~~~l~~~l~~af~~~-~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s---~p~l~l~v 229 (1018)
.+.|.|.|.|.-+||+.|...|.+.|.+. ..|.|.|. |+.| =.++|.||=||..|+-.+. ...|+|-|
T Consensus 9 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~--D~e~--d~v~l~sd~Dl~~a~~~~~~~~~~~l~l~v 80 (81)
T cd05992 9 GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP--DEDG--DLVTISSDEDLEEAIEEARRSGSKKLRLFV 80 (81)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee--CCCC--CEEEeCCHHHHHHHHHHHhhcCCccEEEEe
Confidence 57899999999999999999999999997 56777776 5666 4589999999999999876 56666654
No 28
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=95.70 E-value=0.031 Score=50.23 Aligned_cols=69 Identities=25% Similarity=0.453 Sum_probs=54.2
Q ss_pred ccccc-cccCCCCCcHHHHHHHHHHHhccC-CCeeEEEEeecCCCCccccccCCchhhHHHhhhcC---CCceEeeeec
Q psy16313 158 SECRK-FSVDPQITSYEVLYSLLAKAFDVR-KEFSICYRVLDDCNQETFLPLLSDYELDAAIQNAS---DPCLCLRIDF 231 (1018)
Q Consensus 158 ~e~r~-f~vdp~it~~~~l~~~l~~af~~~-~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s---~p~l~l~v~~ 231 (1018)
.+.|. |.+.+++ +|+.|+..+++.|.+. .+|.|.|+ |+.|. .+++.||=||..|+-.+. .-.|+|.|.-
T Consensus 10 ~~~~~~~~~~~~~-s~~~L~~~i~~~~~~~~~~~~l~Y~--D~dgD--~V~i~sd~Dl~~a~~~~~~~~~~~lrl~v~~ 83 (84)
T PF00564_consen 10 GDIRRIISLPSDV-SFDDLRSKIREKFGLLDEDFQLKYK--DEDGD--LVTISSDEDLQEAIEQAKESGSKTLRLFVQD 83 (84)
T ss_dssp TEEEEEEEECSTS-HHHHHHHHHHHHHTTSTSSEEEEEE--ETTSS--EEEESSHHHHHHHHHHHHHCTTSCEEEEEEE
T ss_pred CeeEEEEEcCCCC-CHHHHHHHHHHHhCCCCccEEEEee--CCCCC--EEEeCCHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 35556 8998888 9999999999999996 78999997 66663 567788888888887552 2377777754
No 29
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=95.01 E-value=0.049 Score=51.12 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=54.4
Q ss_pred CcccccccccCCCCCcHHHHHHHHHHHhccCCCeeEEEEeecCCCCccccccCCchhhHHHhhhcCC
Q psy16313 156 QQSECRKFSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASD 222 (1018)
Q Consensus 156 ~~~e~r~f~vdp~it~~~~l~~~l~~af~~~~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s~ 222 (1018)
.+.+.|-+.|+|.|+ |+.|..=++.-|.++..|+|.|.-- | -+..+.|+=|||.||.+|..
T Consensus 9 ~~~Dv~~i~v~~~i~-f~dL~~kIrdkf~~~~~~~iKykDE---G--D~iti~sq~DLd~Ai~~a~~ 69 (86)
T cd06408 9 AQDDTRYIMIGPDTG-FADFEDKIRDKFGFKRRLKIKMKDD---G--DMITMGDQDDLDMAIDTARS 69 (86)
T ss_pred ecCcEEEEEcCCCCC-HHHHHHHHHHHhCCCCceEEEEEcC---C--CCccccCHHHHHHHHHHHHH
Confidence 356799999999987 9999999999999999999999744 5 78999999999999998763
No 30
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=94.72 E-value=0.089 Score=49.73 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=60.0
Q ss_pred eecccccccCcccccccccCCC----CCcHHHHHHHHHHHhccC--CCeeEEEEeecCCCCccccccCCchhhHHHhhhc
Q psy16313 147 QQSMKYDGMQQSECRKFSVDPQ----ITSYEVLYSLLAKAFDVR--KEFSICYRVLDDCNQETFLPLLSDYELDAAIQNA 220 (1018)
Q Consensus 147 ~~~kk~~~~~~~e~r~f~vdp~----it~~~~l~~~l~~af~~~--~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~ 220 (1018)
||| +|+ .+.|.|.++.. =.+++.|+.-+++.|.|. .+|.|.|+- +.| =|+.|.+|=||.-|+..+
T Consensus 3 vKv-~y~----~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D--edg--d~V~l~~D~DL~~a~~~~ 73 (91)
T cd06398 3 VKV-KYG----GTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD--EDG--DVVTLVDDNDLTDAIQYF 73 (91)
T ss_pred EEE-EeC----CEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC--CCC--CEEEEccHHHHHHHHHHH
Confidence 566 444 46899999864 479999999999999996 589998874 444 388999999999999976
Q ss_pred ----CCCceEeeeec
Q psy16313 221 ----SDPCLCLRIDF 231 (1018)
Q Consensus 221 ----s~p~l~l~v~~ 231 (1018)
..=.|+|-|.+
T Consensus 74 ~~~~~~~~lrl~v~~ 88 (91)
T cd06398 74 CSGSRLNPLRIDVTV 88 (91)
T ss_pred hccCCCceEEEEEEE
Confidence 55566666554
No 31
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=94.53 E-value=0.097 Score=48.53 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=49.3
Q ss_pred cccccccccCCCCCcHHHHHHHHHHHhccC--CCeeEEEEeecCCCCccccccCCchhhHHHhh
Q psy16313 157 QSECRKFSVDPQITSYEVLYSLLAKAFDVR--KEFSICYRVLDDCNQETFLPLLSDYELDAAIQ 218 (1018)
Q Consensus 157 ~~e~r~f~vdp~it~~~~l~~~l~~af~~~--~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~ 218 (1018)
..+.+.|.|.|.+ +|+.|+..+++.|.+. +.|.|+|+-- .| =+..|.||=||+.|+-
T Consensus 8 ~~d~~r~~l~~~~-~~~~L~~~i~~r~~~~~~~~f~LkY~Dd--eg--d~v~ltsd~DL~eai~ 66 (82)
T cd06407 8 GEEKIRFRLPPSW-GFTELKQEIAKRFKLDDMSAFDLKYLDD--DE--EWVLLTCDADLEECID 66 (82)
T ss_pred CCeEEEEEcCCCC-CHHHHHHHHHHHhCCCCCCeeEEEEECC--CC--CeEEeecHHHHHHHHH
Confidence 4578999999988 6999999999999996 6899999844 44 4788999999999986
No 32
>KOG1648|consensus
Probab=93.91 E-value=0.047 Score=64.14 Aligned_cols=53 Identities=21% Similarity=0.581 Sum_probs=47.4
Q ss_pred CCchHHHHHHHHHHHhHHHHHHcCCChhHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy16313 947 GNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRY 1000 (1018)
Q Consensus 947 gnpf~lf~~l~ll~~~r~~i~~~~~d~~~~~~~f~~~~~~h~~~~vl~~ar~l~ 1000 (1018)
-.-|-+|.-+++ -.|-|+.+.|+.||+||++||++|+++|+-.|.++-||.-+
T Consensus 750 ~~~~~i~~g~~~-~~~~~~~~t~~~~~t~~i~~~~~~~e~~~c~r~~~~~~~~~ 802 (813)
T KOG1648|consen 750 TDDFAIFFGLAT-TNYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSSARTHV 802 (813)
T ss_pred CcchhhhhhhHH-HhhHHHHhhcccchHHHHHHHHHHHhhhhhHHHHhcCcchH
Confidence 345679999998 88999999999999999999999999999999999887543
No 33
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=93.45 E-value=0.15 Score=47.45 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=57.5
Q ss_pred cceecccccccCcccccccccCCC-CCcHHHHHHHHHHHhccCCCeeEEEEeecCCCCccccccCCchhhHHHhhhcCCC
Q psy16313 145 SPQQSMKYDGMQQSECRKFSVDPQ-ITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDP 223 (1018)
Q Consensus 145 v~~~~kk~~~~~~~e~r~f~vdp~-it~~~~l~~~l~~af~~~~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s~p 223 (1018)
|+||| . ...|.+.|.++|. -++++.|+.-+++-|.|. .|+|.|+ |+.|..+ .|.||=||..|+=.+.+-
T Consensus 1 V~vKa-t----y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~-~f~lKYl--Dde~e~v--~lssd~eLeE~~rl~~~~ 70 (81)
T cd06396 1 VNLKV-T----YNGESQSFLVSDSENTTWASVEAMVKVSFGLN-DIQIKYV--DEENEEV--SVNSQGEYEEALKSAVRQ 70 (81)
T ss_pred CEEEE-E----ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC-cceeEEE--cCCCCEE--EEEchhhHHHHHHHHHhC
Confidence 57777 3 3457889999994 456999999999999999 8999996 7777765 557899999999755443
Q ss_pred ceEeee
Q psy16313 224 CLCLRI 229 (1018)
Q Consensus 224 ~l~l~v 229 (1018)
==.||+
T Consensus 71 ~~~l~~ 76 (81)
T cd06396 71 GNLLQM 76 (81)
T ss_pred CCEEEE
Confidence 333333
No 34
>COG5210 GTPase-activating protein [General function prediction only]
Probab=91.54 E-value=0.053 Score=64.58 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=49.5
Q ss_pred cccccCCCCeeehhHHHHHHhhcccChhHHHHHHHHHhhcCCCCCCCccccccccc
Q psy16313 2 VLEKEKADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVK 57 (1018)
Q Consensus 2 ~l~~~~~~~l~F~~r~lL~~fkref~~~d~~~lwE~~w~~~~~~~~~~~~~l~~~~ 57 (1018)
||+..+.....|++||+|.+|.++|+.+.++++|+.+|...+..-++..++++..-
T Consensus 367 hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~ 422 (496)
T COG5210 367 HLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLL 422 (496)
T ss_pred HHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 67788899999999999999999999999999999999988877787777766543
No 35
>KOG4567|consensus
Probab=89.97 E-value=0.22 Score=56.37 Aligned_cols=39 Identities=26% Similarity=0.647 Sum_probs=32.8
Q ss_pred ccccCCCCeeehhHHHHHHhhcccChhHHHHHHHHHhhc
Q psy16313 3 LEKEKADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSS 41 (1018)
Q Consensus 3 l~~~~~~~l~F~~r~lL~~fkref~~~d~~~lwE~~w~~ 41 (1018)
|+..+-.-=||.|||+.+.+..||.+.||+++|..+.++
T Consensus 269 L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD 307 (370)
T KOG4567|consen 269 LEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD 307 (370)
T ss_pred HHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC
Confidence 444445556899999999999999999999999988865
No 36
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=88.64 E-value=0.96 Score=42.24 Aligned_cols=68 Identities=19% Similarity=0.336 Sum_probs=54.5
Q ss_pred cccccccccCCCCCcHHHHHHHHHHHhccC----CCeeEEEEeecCCCCccccccCCchhhHHHhhhcCCCceEeeee
Q psy16313 157 QSECRKFSVDPQITSYEVLYSLLAKAFDVR----KEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRID 230 (1018)
Q Consensus 157 ~~e~r~f~vdp~it~~~~l~~~l~~af~~~----~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s~p~l~l~v~ 230 (1018)
-.+.|.|.+.-+-.+|..|..++.+.|..+ .+|.|.|+..|+. .+.+.|+=||.-|+.++ +.|+|+|-
T Consensus 8 g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGD----lVTIts~~dL~~A~~~~--~~~~l~~~ 79 (81)
T cd06401 8 GDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGD----LITIFDSSDLSFAIQCS--RILKLTLF 79 (81)
T ss_pred CCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEECCCCC----EEEeccHHHHHHHHhcC--cceEEEEe
Confidence 457888998876678999999999999987 7899999865543 57889999999997777 45666553
No 37
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=84.47 E-value=0.46 Score=48.85 Aligned_cols=41 Identities=22% Similarity=0.534 Sum_probs=33.6
Q ss_pred cccccCCCCeeehhHHHHHHhhcccChhHHHHHHHHHhhcC
Q psy16313 2 VLEKEKADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSL 42 (1018)
Q Consensus 2 ~l~~~~~~~l~F~~r~lL~~fkref~~~d~~~lwE~~w~~~ 42 (1018)
+|++.+.....|+++|++.+|.|++++++++++|..++.++
T Consensus 154 ~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD~l~~g~ 194 (214)
T PF00566_consen 154 HLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWDFLLEGY 194 (214)
T ss_dssp HHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHCT
T ss_pred hhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHHHHHcCC
Confidence 45667777778999999999999999999999999887543
No 38
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=82.39 E-value=2.8 Score=39.40 Aligned_cols=64 Identities=22% Similarity=0.381 Sum_probs=49.2
Q ss_pred cceecccccccCcccccccccCCCCCcHHHHHHHHHHHhccC--CCeeEEEEeecCCCCccccccCCchhhHHHhh
Q psy16313 145 SPQQSMKYDGMQQSECRKFSVDPQITSYEVLYSLLAKAFDVR--KEFSICYRVLDDCNQETFLPLLSDYELDAAIQ 218 (1018)
Q Consensus 145 v~~~~kk~~~~~~~e~r~f~vdp~it~~~~l~~~l~~af~~~--~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~ 218 (1018)
|+||+ .+.| +.+-+.+||.+| ||.|..-++..|.+. ..|+|.|+ |+.|.-+ .+-||=+|+.||-
T Consensus 1 i~~K~-~y~g----di~it~~d~~~s-~e~L~~~v~~~c~~~~~q~ft~kw~--DEEGDp~--tiSS~~EL~EA~r 66 (83)
T cd06404 1 VRVKA-AYNG----DIMITSIDPSIS-LEELCNEVRDMCRFHNDQPFTLKWI--DEEGDPC--TISSQMELEEAFR 66 (83)
T ss_pred CeEEE-EecC----cEEEEEcCCCcC-HHHHHHHHHHHhCCCCCCcEEEEEE--CCCCCce--eecCHHHHHHHHH
Confidence 45665 4444 457789999655 999999999999994 47999996 6666544 5679999999985
No 39
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=76.13 E-value=7.9 Score=36.67 Aligned_cols=62 Identities=27% Similarity=0.365 Sum_probs=46.8
Q ss_pred cccCCCCCcHHHHHHHHHHHhccC----CCeeEEEEeecCCCCccccccCCchhhHHHhh---hcCCCceEeee
Q psy16313 163 FSVDPQITSYEVLYSLLAKAFDVR----KEFSICYRVLDDCNQETFLPLLSDYELDAAIQ---NASDPCLCLRI 229 (1018)
Q Consensus 163 f~vdp~it~~~~l~~~l~~af~~~----~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~---~~s~p~l~l~v 229 (1018)
|.+.| --+++.|+..+++-|.+. +.|.|+|+ |+.|.- +.|.+|=||-+|+. ++-.-.+.|-|
T Consensus 15 f~~~~-s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl--DDEgD~--VllT~D~DL~e~v~iar~~g~~~v~L~v 83 (86)
T cd06409 15 FRLRP-SESLEELRTLISQRLGDDDFETHLYALSYV--DDEGDI--VLITSDSDLVAAVLVARSAGLKKLDLHL 83 (86)
T ss_pred EEecC-CCCHHHHHHHHHHHhCCccccCCcccEEEE--cCCCCE--EEEeccchHHHHHHHHHHcCCCEEEEEE
Confidence 44555 458999999999999886 57999997 777764 56789999999987 33344444444
No 40
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=75.43 E-value=7.3 Score=36.52 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=50.7
Q ss_pred CCCCcHHHHHHHHHHHhcc-CCCeeEEEEeecCCCCccccccCCchhhHHHhhhcCCCceEeeee
Q psy16313 167 PQITSYEVLYSLLAKAFDV-RKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRID 230 (1018)
Q Consensus 167 p~it~~~~l~~~l~~af~~-~~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s~p~l~l~v~ 230 (1018)
|.=-+|..|+..|++-+.| .....+||+..+..+ +.+| ||=||+.|+-.+.+=||.|--+
T Consensus 18 p~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~---~v~l-~d~dle~aws~~~~~~lTLwC~ 78 (80)
T cd06406 18 ARGLSYATLLQKISSKLELPAEHITLSYKSEASGE---DVIL-SDTNMEDVWSQAKDGCLTLWCT 78 (80)
T ss_pred CCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCC---ccCc-ChHHHHHHHHhhcCCeEEEEEe
Confidence 4455899999999999999 666999998776655 4677 9999999999999999998644
No 41
>KOG1092|consensus
Probab=74.85 E-value=4.1 Score=48.11 Aligned_cols=56 Identities=25% Similarity=0.624 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhHHHHHHcCCChhHHHHHHHHHhhhc----CHHHHHHHHHH
Q psy16313 938 LPPPNEFGGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKH----NVHKVLNEARK 998 (1018)
Q Consensus 938 lp~p~~~g~gnpf~lf~~l~ll~~~r~~i~~~~~d~~~~~~~f~~~~~~h----~~~~vl~~ar~ 998 (1018)
+--|+-| |=|.+|+|.|+|..+|+.|| .|||.+++||-+.+--+| .+.-+|..|..
T Consensus 412 ~aE~dgf---~~FhvYvcAAFL~kW~~eL~--e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~ 471 (484)
T KOG1092|consen 412 LAEPDGF---NEFHVYVCAAFLLKWSSELM--ENDFQELILFLQNLPTHNWSDREIELLLSEAFR 471 (484)
T ss_pred hcCccch---HHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Confidence 4445544 78999999999999999999 899999999999888776 34556666643
No 42
>PF14961 BROMI: Broad-minded protein
Probab=69.73 E-value=10 Score=49.91 Aligned_cols=141 Identities=13% Similarity=0.085 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCCCccccCchhhHHHHHhhc-CchHHHHHHHHHHHHHhhhccc----------CCC----hHHH----
Q psy16313 440 LFNILTTYALNHPAVSYCQGMSDLASPLLVTM-SNEAHAYICFCALMRRLGRNFL----------VDG----ITMT---- 500 (1018)
Q Consensus 440 LrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm-~dEaDAFWcF~~LMer~~~nF~----------~d~----~gm~---- 500 (1018)
-.+||+.|..+...-+|. |-.-.|+.++++| .+-..+.-.+..|-......|. ... .|+.
T Consensus 1086 ~l~~~~~~~~~~~~~~y~-g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~~ 1164 (1296)
T PF14961_consen 1086 SLHILFEFIHFCLQGSYP-GHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVYF 1164 (1296)
T ss_pred hhHHHhhhhcccCCCCCC-CchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchhh
Confidence 344555555555555665 7777777776666 4433555444444433322221 001 1211
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcCCCCCCCCccccccccCCCCC
Q psy16313 501 QRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEPPC 580 (1018)
Q Consensus 501 ~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~~~~~~feL~L~~l~fd~il 580 (1018)
.-+..++.+|+...|.+|.-|.-.|..+...|.+|+.-+|=..+++..++...=+..--|+.+-.-+.++++.--...|+
T Consensus 1165 ~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkHlq~~il 1244 (1296)
T PF14961_consen 1165 CSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKHLQPEIL 1244 (1296)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHHhhHHHH
Confidence 13468999999999999999999999999999999999999999998877653333333333333334444444333444
Q ss_pred C
Q psy16313 581 D 581 (1018)
Q Consensus 581 ~ 581 (1018)
.
T Consensus 1245 q 1245 (1296)
T PF14961_consen 1245 Q 1245 (1296)
T ss_pred H
Confidence 3
No 43
>KOG3606|consensus
Probab=53.77 E-value=20 Score=40.44 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=58.8
Q ss_pred CcccccccccCCCC-CcHHHHHHHHHHHhcc-CCCeeEEEEeecCCCCccccccCCchhhHHHhhhcCCCceEeeeecc
Q psy16313 156 QQSECRKFSVDPQI-TSYEVLYSLLAKAFDV-RKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRIDFV 232 (1018)
Q Consensus 156 ~~~e~r~f~vdp~i-t~~~~l~~~l~~af~~-~~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s~p~l~l~v~~~ 232 (1018)
.-.|||.|+++-.- .+||..++|+...-.| +.||.|+|-..- | =.||+.-|=.+--|+-+| .|.|+|=|.-|
T Consensus 25 FdaEfRRfsl~r~~~~~f~~F~~Lv~~~H~i~nvdvllgY~d~h--g--DLLPinNDDn~~ka~~sa-~PlLR~~iQkr 98 (358)
T KOG3606|consen 25 FDAEFRRFSLPRHSASSFDEFYSLVEHLHHIPNVDVLLGYADTH--G--DLLPINNDDNLHKALSSA-RPLLRLLIQKR 98 (358)
T ss_pred ccchhheecccccCcccHHHHHHHHHHHhcCCCceEEEEEecCC--C--ceecccCchhHHHHhhcc-Cchhhhhhhhh
Confidence 45799999998542 3899999999999999 889999997554 3 369999999999988655 78888877655
No 44
>KOG1091|consensus
Probab=51.34 E-value=7.1 Score=47.61 Aligned_cols=36 Identities=33% Similarity=0.586 Sum_probs=31.8
Q ss_pred eehhHHHHHHhhcccChhHHHHHHH-HHhhcCCCCCC
Q psy16313 12 LYCYRWLLLEMKREFAFNDALIMLE-VMWSSLPPNPP 47 (1018)
Q Consensus 12 ~F~~r~lL~~fkref~~~d~~~lwE-~~w~~~~~~~~ 47 (1018)
+|--||+=+.|=|||...|+|-+|. ++-.++|....
T Consensus 278 ifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~L 314 (625)
T KOG1091|consen 278 IFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGIL 314 (625)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHH
Confidence 8899999999999999999999999 77777766553
No 45
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=46.65 E-value=33 Score=32.43 Aligned_cols=63 Identities=27% Similarity=0.443 Sum_probs=49.8
Q ss_pred ecccccccCcccccccccCCCCCcHHHHHHHHHHHhccCC-CeeEEEEeecCCCCccccccCCchhhHHHhhhc
Q psy16313 148 QSMKYDGMQQSECRKFSVDPQITSYEVLYSLLAKAFDVRK-EFSICYRVLDDCNQETFLPLLSDYELDAAIQNA 220 (1018)
Q Consensus 148 ~~kk~~~~~~~e~r~f~vdp~it~~~~l~~~l~~af~~~~-~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~ 220 (1018)
|| ||.| ..|.|+ .|.+-+++-|++-|..-|.|.. .|+|+|. |+.|.+| .|-||=||--|+--+
T Consensus 4 Kv-~~~g----~~RRf~-~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi--DeD~D~I--Tlssd~eL~d~~~~~ 67 (82)
T cd06397 4 KS-SFLG----DTRRIV-FPDIPTWEALASKLENLYNLPEIKVGVTYI--DNDNDEI--TLSSNKELQDFYRLS 67 (82)
T ss_pred EE-EeCC----ceEEEe-cCCCccHHHHHHHHHHHhCCChhHeEEEEE--cCCCCEE--EecchHHHHHHHHhc
Confidence 55 5554 579988 7789999999999999999974 3999996 5566665 567999998887643
No 46
>KOG1093|consensus
Probab=46.60 E-value=15 Score=45.06 Aligned_cols=56 Identities=16% Similarity=0.367 Sum_probs=48.4
Q ss_pred CCCCCCchHHHHHHHHHHHhHHHHHHcCCChhHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy16313 943 EFGGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYE 1001 (1018)
Q Consensus 943 ~~g~gnpf~lf~~l~ll~~~r~~i~~~~~d~~~~~~~f~~~~~~h~~~~vl~~ar~l~~ 1001 (1018)
-|-+||-|.|++.+|+|.+-||..+.+| |||++-+|-.+- .-+...++.+.+.||.
T Consensus 536 lml~~~SFplmi~vAil~~lR~~LLa~n--fne~illf~d~p-dldId~~Ires~~l~e 591 (725)
T KOG1093|consen 536 LMLGHSSFPLMIGVAILIQLRDPLLACN--FNECILLFSDLP-DLDIDVCIRESYHLME 591 (725)
T ss_pred HhcCCCccHHHHHHHHHHHhhhhhhhCC--chhheeeeccCC-cccHHHHHHHHhhhhh
Confidence 3678999999999999999999999976 789998887665 7788899998888874
No 47
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=42.11 E-value=71 Score=30.05 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=50.8
Q ss_pred CCCCcHHHHHHHHHHHhccCCC-eeEEEEeecCCCCccccccCCchhhHHHhhhcCCCceEeee
Q psy16313 167 PQITSYEVLYSLLAKAFDVRKE-FSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRI 229 (1018)
Q Consensus 167 p~it~~~~l~~~l~~af~~~~~-f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s~p~l~l~v 229 (1018)
|-=.+|-.|+.+|.+++.+..+ -.+||+..|+.|+- +++.-+=||..|.-.+.+-||-|..
T Consensus 14 ~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~--v~l~~e~~me~aW~~v~~~~ltLwc 75 (78)
T cd06411 14 PRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHW--VPISGEESLQRAWQDVADGPRGLQL 75 (78)
T ss_pred cCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccE--eecCcchHHHHHHHhccCCceEEEE
Confidence 3457899999999999999665 88999999988654 5555588999999999999988864
No 48
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=34.93 E-value=1.2e+02 Score=29.28 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=51.4
Q ss_pred ccccccccCCCCCcHHHHHHHHHHHhccCCCeeEEEEeecCCCCccccccCCchhhHHHhh
Q psy16313 158 SECRKFSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQ 218 (1018)
Q Consensus 158 ~e~r~f~vdp~it~~~~l~~~l~~af~~~~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~ 218 (1018)
-|.|--+||-+ +|+..|.+=|...|.+..++.|.|+..++.-. .-++|.+|=||...+-
T Consensus 22 G~tr~i~V~r~-~s~~el~~kl~~~~~~~~~~~lky~Lp~edld-~Lisv~~DeDl~~M~~ 80 (97)
T cd06410 22 GETRIVSVDRS-ISFKELVSKLSELFGAGVVVTLKYQLPDEDLD-ALISVSNDEDLKNMME 80 (97)
T ss_pred CceEEEEEcCC-CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcc-eeEEecCcHHHHHHHH
Confidence 47788999999 79999999999999997779999999986654 8899999999998775
No 49
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=34.39 E-value=47 Score=29.52 Aligned_cols=50 Identities=24% Similarity=0.466 Sum_probs=36.0
Q ss_pred cccccccccCCCCCcHHHHHHHHHHHhccC--CCeeEEEEeecCCCCccccccC
Q psy16313 157 QSECRKFSVDPQITSYEVLYSLLAKAFDVR--KEFSICYRVLDDCNQETFLPLL 208 (1018)
Q Consensus 157 ~~e~r~f~vdp~it~~~~l~~~l~~af~~~--~~f~i~y~~~d~~g~~~yl~l~ 208 (1018)
..+.+.|.||+.-|--+.+..|-.+ ..|+ --|++.| ..|..|...||.+-
T Consensus 5 D~~~~~~~v~~~~t~~~l~~~v~~~-l~l~e~~~FgL~~-~~~~~~~~~wL~~~ 56 (80)
T PF09379_consen 5 DGTTKTFEVDPKTTGQDLLEQVCDK-LGLKEKEYFGLQY-QVDKDGEHHWLDLD 56 (80)
T ss_dssp SEEEEEEEEETTSBHHHHHHHHHHH-HTTSSGGGEEEEE--EBTTSSEEEE-SS
T ss_pred CCCcEEEEEcCCCcHHHHHHHHHHH-cCCCCccEEEEEE-eecCCCcceeccCc
Confidence 3456789999999977777766554 4884 3499999 77888888887653
No 50
>PF03296 Pox_polyA_pol: Poxvirus poly(A) polymerase nucleotidyltransferase domain; InterPro: IPR024231 Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This entry represents the nucleotidyltransferase domain of the catalytic subunit [].; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=31.27 E-value=31 Score=35.53 Aligned_cols=31 Identities=32% Similarity=0.572 Sum_probs=20.1
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHhhcccCCc
Q psy16313 982 KMVRKHNVHKVLNEARKRYESYLSAFHLSCP 1012 (1018)
Q Consensus 982 ~~~~~h~~~~vl~~ar~l~~~yl~~~~~~~~ 1012 (1018)
+--+|||++....-..+|..+||+.|+.+|-
T Consensus 24 ~~~grh~vS~lV~~V~klmeEyLrrhNk~Ci 54 (149)
T PF03296_consen 24 KVMGRHNVSDLVENVNKLMEEYLRRHNKSCI 54 (149)
T ss_dssp ---------THHHHHHHHHHHHHHH-TTTEE
T ss_pred cccccccCcHHHHHHHHHHHHHHHhhCCCeE
Confidence 5568999999999999999999999999994
No 51
>PRK00587 hypothetical protein; Provisional
Probab=23.94 E-value=50 Score=32.12 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=35.3
Q ss_pred cccccCCCccceecccccccCcccccccccCCCCC---cHHHHHHHHHHHhc
Q psy16313 136 LKSCASGPQSPQQSMKYDGMQQSECRKFSVDPQIT---SYEVLYSLLAKAFD 184 (1018)
Q Consensus 136 ~~~~~s~~~v~~~~kk~~~~~~~e~r~f~vdp~it---~~~~l~~~l~~af~ 184 (1018)
.++.+ +..|.|.+ +..-|.++..|||.+- +.|.|+.++.-||.
T Consensus 29 v~g~~-gGlVkV~~-----nG~~~i~~i~Idp~lld~eD~E~LeDLI~aA~N 74 (99)
T PRK00587 29 FDFDY-KKYILIKI-----KGNLNIEKIEINKELIDPEDKETLQDMLREAIN 74 (99)
T ss_pred EEEEc-CCeEEEEE-----EcCccEEEEEECHHHcCCccHHHHHHHHHHHHH
Confidence 34565 88888887 4566889999999996 79999999999874
No 52
>PRK14629 hypothetical protein; Provisional
Probab=20.04 E-value=65 Score=31.39 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=38.1
Q ss_pred ccccccccCCCccceecccccccCcccccccccCCCCCc---HHHHHHHHHHHhc
Q psy16313 133 NGILKSCASGPQSPQQSMKYDGMQQSECRKFSVDPQITS---YEVLYSLLAKAFD 184 (1018)
Q Consensus 133 ~~~~~~~~s~~~v~~~~kk~~~~~~~e~r~f~vdp~it~---~~~l~~~l~~af~ 184 (1018)
+...+|-+.+..|.|.+ ++.-+.++..|||.+-+ .|+|+.++.-||.
T Consensus 28 ~~~veg~aggGlVkV~~-----nG~~~v~~i~Idp~lld~eD~e~LeDLI~aAvN 77 (99)
T PRK14629 28 QIVVCGRAGSDVVVVEM-----NGEFNVKKVSIKEEFFDDLDNEALEHMIKSAFN 77 (99)
T ss_pred ccEEEEEecCCEEEEEE-----EcCccEEEEEECHHHcCcccHHHHHHHHHHHHH
Confidence 34456777888898887 45667899999999975 8999999999984
Done!