Query psy16313
Match_columns 1018
No_of_seqs 476 out of 1626
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 18:12:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfz_A TBC1 domain family memb 100.0 3.9E-42 1.3E-46 377.5 22.0 230 320-562 23-276 (345)
2 2qq8_A TBC1 domain family memb 100.0 7.9E-43 2.7E-47 382.7 14.7 255 321-580 19-278 (334)
3 1fkm_A Protein (GYP1P), ORF YO 100.0 9.2E-42 3.1E-46 383.0 23.1 226 323-560 8-261 (396)
4 3qye_A TBC1 domain family memb 100.0 1.3E-42 4.4E-47 378.9 6.6 242 320-580 27-273 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1.6E-41 5.4E-46 367.6 8.6 231 323-580 5-239 (310)
6 4hl4_A TBC1 domain family memb 100.0 1.4E-37 4.7E-42 334.9 9.1 229 323-580 20-253 (292)
7 3qwl_A TBC1 domain family memb 100.0 2.1E-31 7.1E-36 289.5 9.3 223 324-579 27-251 (294)
8 1wmh_B Partitioning defective- 97.8 2.1E-05 7E-10 71.8 5.6 77 144-230 6-84 (86)
9 2kkc_A Sequestosome-1; P62, PB 96.8 0.0026 8.8E-08 59.8 7.3 84 143-230 2-100 (102)
10 4hl4_A TBC1 domain family memb 96.8 0.0008 2.7E-08 72.4 4.4 59 945-1003 231-289 (292)
11 1fkm_A Protein (GYP1P), ORF YO 96.7 0.00069 2.4E-08 76.4 3.9 55 948-1004 325-383 (396)
12 3qwl_A TBC1 domain family memb 96.4 0.0028 9.6E-08 69.1 5.7 58 945-1005 230-288 (294)
13 1vd2_A Protein kinase C, IOTA 96.3 0.0093 3.2E-07 54.8 7.9 79 141-229 3-86 (89)
14 2ktr_A Sequestosome-1; autopha 96.3 0.0082 2.8E-07 57.7 7.6 71 155-229 32-114 (117)
15 2qfz_A TBC1 domain family memb 96.2 0.0032 1.1E-07 69.1 5.1 59 944-1003 271-336 (345)
16 3qye_A TBC1 domain family memb 95.6 0.0018 6.2E-08 70.6 -0.2 40 2-41 213-252 (331)
17 2qq8_A TBC1 domain family memb 95.1 0.013 4.3E-07 64.4 4.2 54 945-1000 256-309 (334)
18 3hzj_A Rabgap1L, RAB GTPase-ac 93.8 0.053 1.8E-06 58.6 5.4 53 945-999 217-274 (310)
19 1wj6_A KIAA0049 protein, RSGI 87.4 0.67 2.3E-05 43.5 5.2 89 134-232 4-93 (101)
20 1oey_A P67-PHOX, neutrophil cy 86.3 0.94 3.2E-05 41.2 5.4 60 167-230 21-81 (83)
21 2bkf_A Zinc-finger protein NBR 82.4 1.4 4.9E-05 40.3 4.8 80 142-231 4-84 (87)
22 1q1o_A Cell division control p 79.8 2 7E-05 40.1 5.0 59 158-221 22-86 (98)
23 1pqs_A Cell division control p 64.5 6.7 0.00023 35.1 4.4 57 159-220 2-64 (77)
24 3u2b_C Transcription factor SO 23.5 2.3E+02 0.008 23.9 7.3 56 947-1007 7-67 (79)
No 1
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=3.9e-42 Score=377.46 Aligned_cols=230 Identities=21% Similarity=0.342 Sum_probs=200.3
Q ss_pred CCCHHHHHhhhccCCCccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy16313 320 PLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLK 399 (1018)
Q Consensus 320 PLteeeW~k~Ld~~Griid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~ 399 (1018)
.-..++|.++++.+ .++.++||++++ +|||+.+|+.||++|||++|.+ ..+|...+.++++.|..++++|.....
T Consensus 23 ~~r~~kw~~~l~~~--~~d~~~Lr~l~~-~GiP~~~R~~vW~~llg~~p~~--~~~~~~~l~~~~~~Y~~l~~~~~~~~~ 97 (345)
T 2qfz_A 23 ASRLDKFKQLLAGP--NTDLEELRRLSW-SGIPKPVRPMTWKLLSGYLPAN--VDRRPATLQRKQKEYFAFIEHYYDSRN 97 (345)
T ss_dssp -CHHHHHHHHHHCS--BCCHHHHHHHHT-TCCCGGGHHHHHHHHTTSSCSB--GGGHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHcCC--CCCHHHHHHHHH-CCCCHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 34468999999854 478999999995 9999999999999999999875 456778888999999999998754321
Q ss_pred ccCCCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcC-------
Q psy16313 400 RGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMS------- 472 (1018)
Q Consensus 400 ~~~~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~------- 472 (1018)
. .......++|++||.||+|+ ++|+. ..+++.|+|||.+||.+||++|||||||+||||||+++.
T Consensus 98 ~----~~~~~~~~~I~~Dv~RT~p~-~~F~~---~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~ 169 (345)
T 2qfz_A 98 D----EVHQDTYRQIHIDIPRMSPE-ALILQ---PKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAE 169 (345)
T ss_dssp -------CHHHHHHHHHHGGGCSCH-HHHTS---HHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC--
T ss_pred c----cchHHHHHHHHHhCcccCCc-cccCC---chHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccc
Confidence 1 11233568999999999999 99985 367889999999999999999999999999999998763
Q ss_pred -----------------chHHHHHHHHHHHHHhhhcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHH
Q psy16313 473 -----------------NEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRW 535 (1018)
Q Consensus 473 -----------------dEaDAFWcF~~LMer~~~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RW 535 (1018)
.|++|||||++||+++.++|..+..++...+.+++.+|+.++|+||+||++.|+.+.+|+++|
T Consensus 170 ~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W 249 (345)
T 2qfz_A 170 EVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRW 249 (345)
T ss_dssp ---CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHH
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 288999999999999988888888999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCChHHHHHHHHHHhhcCCC
Q psy16313 536 LLLEMKREFAFNDALIMLEVMWSSLPP 562 (1018)
Q Consensus 536 FLTLFsrefPfedVLRIWDvfwasl~~ 562 (1018)
|+++|+++||+++++||||++|+.+..
T Consensus 250 ~~~lF~~~~p~~~~lrlWD~~l~~g~~ 276 (345)
T 2qfz_A 250 MNNLLMREVPLRCTIRLWDTYQSEPDG 276 (345)
T ss_dssp HHTTTTTTSCHHHHHHHHHHHTTSTTT
T ss_pred HHHHHcccCCHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998754
No 2
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.9e-43 Score=382.73 Aligned_cols=255 Identities=20% Similarity=0.241 Sum_probs=201.5
Q ss_pred CCHHHHH-hhhccCCCccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy16313 321 LNDTEFR-QFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLK 399 (1018)
Q Consensus 321 LteeeW~-k~Ld~~Griid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~ 399 (1018)
-...+|. .++.+|+...+.++||++++ +|||+++|+.||++++|+. ...+...+...+++....|..+...+.....
T Consensus 19 ~~~~~W~~~il~~w~~~~~~~~lr~l~~-~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~ 96 (334)
T 2qq8_A 19 NAVLTWNNEILPNWETMWCSRKVRDLWW-QGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVEN 96 (334)
T ss_dssp CHHHHHHHTTGGGCC--CCCHHHHHHHH-TCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHhHHhccChHHHHHHHH-CCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCcc
Confidence 3468998 59999999889999999985 9999999999999999986 3455555656666666666655443321110
Q ss_pred cc--CCCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHH
Q psy16313 400 RG--QMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHA 477 (1018)
Q Consensus 400 ~~--~~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDA 477 (1018)
.. ....+.....++|++||.||||++++|+. ++++++.|+|||.+||.+||++|||||||+|||+||++++ |++|
T Consensus 97 ~d~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~--~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~-E~~a 173 (334)
T 2qq8_A 97 EDAGFSAADREASLELIKLDISRTFPNLCIFQQ--GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLD-TADA 173 (334)
T ss_dssp ----------CCHHHHHHHHHHTSSGGGCSSST--TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSC-HHHH
T ss_pred cccccccccchhHHHHHHHHHhhcCCCchhhcC--CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCC-HHHH
Confidence 00 00011123468999999999999999986 3478999999999999999999999999999999999995 6699
Q ss_pred HHHHHHHHHHhh--hcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHH
Q psy16313 478 YICFCALMRRLG--RNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEV 555 (1018)
Q Consensus 478 FWcF~~LMer~~--~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDv 555 (1018)
||||++||+++. ..|..+..++...+..++.+|+.++|+||+||++.|+.+.+|+++||+++|+++||+++++||||+
T Consensus 174 F~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~ 253 (334)
T 2qq8_A 174 FIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDV 253 (334)
T ss_dssp HHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHH
Confidence 999999999874 445567788888899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCccccccccCCCCC
Q psy16313 556 MWSSLPPNPPQGELPLYDVKFEPPC 580 (1018)
Q Consensus 556 fwasl~~~~~~feL~L~~l~fd~il 580 (1018)
||+.+......+.++++...-+.|+
T Consensus 254 ~l~eg~~~l~~valaiL~~~~~~Ll 278 (334)
T 2qq8_A 254 FCRDGEEFLFRTALGILKLFEDILT 278 (334)
T ss_dssp HHHHCHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 9999876666667777766555543
No 3
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=9.2e-42 Score=383.04 Aligned_cols=226 Identities=23% Similarity=0.413 Sum_probs=202.3
Q ss_pred HHHHHhhhccCCCccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccC
Q psy16313 323 DTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQ 402 (1018)
Q Consensus 323 eeeW~k~Ld~~Griid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~ 402 (1018)
.++|.++++.++ .++.++||++++ +|||+.+|+.||++|||++|.+. .+|...+.++++.|..++++|...
T Consensus 8 ~~kw~~lL~~~~-~~d~~~Lr~l~~-~GIP~~lR~~vW~~LLg~~~~~~--~~~~~~l~~~~~~Y~~l~~~~~~~----- 78 (396)
T 1fkm_A 8 ISKFDNILKDKT-IINQQDLRQISW-NGIPKIHRPVVWKLLIGYLPVNT--KRQEGFLQRKRKEYRDSLKHTFSD----- 78 (396)
T ss_dssp HHHHHHHHSSCS-BCCHHHHHHHHT-TCCCGGGHHHHHHHHTTCSCSBG--GGHHHHHHHHHHHHHHHHHHTSSS-----
T ss_pred HHHHHHHHcCCC-CCCHHHHHHHHH-cCCCHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHHHHHHHHHHhhc-----
Confidence 479999998754 478999999985 89999999999999999998764 456778889999999999886531
Q ss_pred CCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcC----------
Q psy16313 403 MVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMS---------- 472 (1018)
Q Consensus 403 ~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~---------- 472 (1018)
.........++|++||.||+|++++|+. ..+++.|+|||.+||.+||++|||||||+||||||+++.
T Consensus 79 ~~~~~~~~~~qI~~Dv~RT~p~~~~F~~---~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~ 155 (396)
T 1fkm_A 79 QHSRDIPTWHQIEIDIPRTNPHIPLYQF---KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID 155 (396)
T ss_dssp SCSTHHHHHHHHHHHGGGSSTTSGGGGS---HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred cCcccHHHHHHHHHHhhhhCCCcccccC---chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccc
Confidence 1222345678999999999999999995 478999999999999999999999999999999998751
Q ss_pred --------c----------hHHHHHHHHHHHHHhhhcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHH
Q psy16313 473 --------N----------EAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYR 534 (1018)
Q Consensus 473 --------d----------EaDAFWcF~~LMer~~~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~R 534 (1018)
+ |++|||||++||+++.++|..++.++...+..++.||+.++|+||+||++.|+.+.+|+++
T Consensus 156 ~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r 235 (396)
T 1fkm_A 156 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFR 235 (396)
T ss_dssp GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHH
T ss_pred cccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 1 8899999999999998888888899999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhhcC
Q psy16313 535 WLLLEMKREFAFNDALIMLEVMWSSL 560 (1018)
Q Consensus 535 WFLTLFsrefPfedVLRIWDvfwasl 560 (1018)
||+++|+++||+++++||||+||+.+
T Consensus 236 W~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 236 WMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp HHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999975
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.3e-42 Score=378.88 Aligned_cols=242 Identities=21% Similarity=0.327 Sum_probs=203.5
Q ss_pred CCCHHHHHhhhccCCC---ccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHH
Q psy16313 320 PLNDTEFRQFLDPVGQ---IIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKD 396 (1018)
Q Consensus 320 PLteeeW~k~Ld~~Gr---iid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks 396 (1018)
+-..++|.++++.+|+ ..+.++||++++ +|||+.+|+.||++|+|+++...+..++ ...+...|.++..++
T Consensus 27 ~e~~~~W~~~l~~~~~~~~~~~~~~l~~~~~-~GIP~~lR~~vW~~Llg~~~~~~~~~~~---~~~~~~~Y~~l~~~~-- 100 (331)
T 3qye_A 27 KEVTTVWEKMLSTPGRSKIKFDMEKMHSAVG-QGVPRHHRGEIWKFLAEQFHLKHQFPSK---QQPKDVPYKELLKQL-- 100 (331)
T ss_dssp HHHHHHHHHHHTCTTGGGCCCCHHHHHHHHH-TCCCGGGHHHHHHHHHHHHHHHCCCCSS---SCCCCCCHHHHTTSC--
T ss_pred HHHHHHHHHHhccCCCCcccCCHHHHHHHHH-cCCCHHHHHHHHHHHhCcchhhhcchhh---hhhchHHHHHHHHhc--
Confidence 3367899999998887 457899999996 9999999999999999987432111110 122445677766432
Q ss_pred hhhccCCCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHH
Q psy16313 397 LLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAH 476 (1018)
Q Consensus 397 ~~~~~~~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaD 476 (1018)
..+ .++|++||.||+|++++|... .+++++.|+|||.+|+.+||++|||||||+|||+||++++ |++
T Consensus 101 -------~~~----~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~-E~~ 167 (331)
T 3qye_A 101 -------TSQ----QHAILIDLGRTFPTHPYFSAQ-LGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS-EEE 167 (331)
T ss_dssp -------CTT----HHHHHHHHTTSSTTSTTTCST-TCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSC-HHH
T ss_pred -------CCc----hhHHHHhhcccCCCchhhcCC-CcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhh-HHH
Confidence 111 368999999999999999975 3588999999999999999999999999999999999995 559
Q ss_pred HHHHHHHHHHHh--hhcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHH
Q psy16313 477 AYICFCALMRRL--GRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLE 554 (1018)
Q Consensus 477 AFWcF~~LMer~--~~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWD 554 (1018)
|||||+.||+++ ...|..+..++...+.++..+|+.++|+||+||++.|+.+.+|+++||+++|+++||++.++||||
T Consensus 168 aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD 247 (331)
T 3qye_A 168 AFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFD 247 (331)
T ss_dssp HHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHH
Confidence 999999999985 466667888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCccccccccCCCCC
Q psy16313 555 VMWSSLPPNPPQGELPLYDVKFEPPC 580 (1018)
Q Consensus 555 vfwasl~~~~~~feL~L~~l~fd~il 580 (1018)
+||+.+......+.++++...-+.|+
T Consensus 248 ~~l~~g~~~l~~valaiL~~~~~~ll 273 (331)
T 3qye_A 248 MIFLQGTEVIFKVALSLLGSHKPLIL 273 (331)
T ss_dssp HHHHHCTTHHHHHHHHHHHHTHHHHH
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHh
Confidence 99999987777777777777666553
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=367.64 Aligned_cols=231 Identities=18% Similarity=0.282 Sum_probs=194.7
Q ss_pred HHHHHhhhccCCCcc--CHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q psy16313 323 DTEFRQFLDPVGQII--QSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKR 400 (1018)
Q Consensus 323 eeeW~k~Ld~~Grii--d~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~ 400 (1018)
.++|.+++++|++.. +.++||++++ +|||+.+|+.||+.|+|+.+. ....+.|..+..+
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~l~~l~~-~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~------- 65 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKGLSTLVK-SGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITK------- 65 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTTHHHHHH-HCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHHHH-CCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhc-------
Confidence 468999999887654 6789999995 999999999999999999852 1233567665431
Q ss_pred cCCCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHH
Q psy16313 401 GQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYIC 480 (1018)
Q Consensus 401 ~~~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWc 480 (1018)
..+ ..++|++||.||+|++++|... ++.+++.|+|||.+||.+||++|||||||+|||+||+++ +|++||||
T Consensus 66 --~~~----~~~~I~~Dv~Rt~p~~~~f~~~-~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~ 137 (310)
T 3hzj_A 66 --DSA----QESVITRDIHRTFPAHDYFKDT-GGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCV 137 (310)
T ss_dssp --CCT----THHHHHHHHTTSSTTSTTTSST-TSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred --cCC----cHHHHHHHHHhhCCCchhhcCC-CchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHH
Confidence 111 1368999999999999999975 357899999999999999999999999999999999999 56699999
Q ss_pred HHHHHHHh--hhcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhh
Q psy16313 481 FCALMRRL--GRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWS 558 (1018)
Q Consensus 481 F~~LMer~--~~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwa 558 (1018)
|+++|+++ ...|..+..++...+.+++.+|+.++|+||+||.+.|+++.+|+++||+++|+++||+++++||||++|+
T Consensus 138 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~ 217 (310)
T 3hzj_A 138 LVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLC 217 (310)
T ss_dssp HHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 99999974 3555555667888889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccccccCCCCC
Q psy16313 559 SLPPNPPQGELPLYDVKFEPPC 580 (1018)
Q Consensus 559 sl~~~~~~feL~L~~l~fd~il 580 (1018)
.+........++++...-+.|+
T Consensus 218 ~g~~~l~~v~lail~~~~~~Ll 239 (310)
T 3hzj_A 218 EGLNIIFHVALALLKTSKEDLL 239 (310)
T ss_dssp HCTTHHHHHHHHHHHHTHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHH
Confidence 9887666666766666555543
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=1.4e-37 Score=334.88 Aligned_cols=229 Identities=18% Similarity=0.208 Sum_probs=181.6
Q ss_pred HHHHHhhhccCCCccCHHHHHHHHHhC-C-CCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q psy16313 323 DTEFRQFLDPVGQIIQSRELRTVIYYG-G-IEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKR 400 (1018)
Q Consensus 323 eeeW~k~Ld~~Griid~ekLR~lI~rg-G-IP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~ 400 (1018)
.++++..+. ...++.++||++++.+ | +|+++|+.||+.|+|+.+...... |......
T Consensus 20 ~~~i~~~l~--~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~------------~~~~~~~------- 78 (292)
T 4hl4_A 20 VAEIHQALN--SDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI------------SGKNLRQ------- 78 (292)
T ss_dssp HHHHHHHHT--SSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSC------------CCTTHHH-------
T ss_pred HHHHHHHHc--CCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCc------------hhhhhcc-------
Confidence 355666664 3457899999999753 3 789999999999999997653321 2111100
Q ss_pred cCCCCchHHHHhHhhhhcccccccccccccC-CcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHH
Q psy16313 401 GQMVGDLAYVTGMVRKDVLRTDRHHVFYAGA-DDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYI 479 (1018)
Q Consensus 401 ~~~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~-ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFW 479 (1018)
... ..++|++||.||+|+++.|... ....+++.|+|||.+|+.+||++|||||||+|||+||++++ |++|||
T Consensus 79 --~~~----~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~-e~~aF~ 151 (292)
T 4hl4_A 79 --MSK----DYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVG-ERLATS 151 (292)
T ss_dssp --HCT----THHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHC-HHHHHH
T ss_pred --cch----hHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcC-HHHHHH
Confidence 011 2468999999999999987532 12467789999999999999999999999999999999995 559999
Q ss_pred HHHHHHHHhhhccc-CCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCC-hHHHHHHHHHHh
Q psy16313 480 CFCALMRRLGRNFL-VDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFA-FNDALIMLEVMW 557 (1018)
Q Consensus 480 cF~~LMer~~~nF~-~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefP-fedVLRIWDvfw 557 (1018)
||+++|+...+.|+ .+..++...+.+++.+|+.++|+||+||++.++ ..+|+++||+|+|++++| +++++||||++|
T Consensus 152 ~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l 230 (292)
T 4hl4_A 152 LVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFL 230 (292)
T ss_dssp HHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence 99999998776665 455577777889999999999999999999999 579999999999999996 999999999999
Q ss_pred hcCCCCCCCCccccccccCCCCC
Q psy16313 558 SSLPPNPPQGELPLYDVKFEPPC 580 (1018)
Q Consensus 558 asl~~~~~~feL~L~~l~fd~il 580 (1018)
+.++.......++++...-+.|+
T Consensus 231 ~~g~~~~~~v~~ail~~~~~~Ll 253 (292)
T 4hl4_A 231 ACHPLMPIYFAAVIVLYREQEVL 253 (292)
T ss_dssp HSCTTHHHHHHHHHHHHTHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHHHH
Confidence 99876555556666666555543
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=289.50 Aligned_cols=223 Identities=11% Similarity=0.060 Sum_probs=170.7
Q ss_pred HHHHhhhccCCCccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccCC
Q psy16313 324 TEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQM 403 (1018)
Q Consensus 324 eeW~k~Ld~~Griid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~~ 403 (1018)
..+..++. +.++|.++||+++++||||+.+|+.||++|||+.|.+.+. |...+++++++|..++++...
T Consensus 27 ~~~~~ll~--~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~~~~------- 95 (294)
T 3qwl_A 27 KSLEILLK--DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHALKV------- 95 (294)
T ss_dssp HHHHHHTT--SSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhc--CCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHhhhh-------
Confidence 56777776 5789999999999866799999999999999999987554 678899999999999987321
Q ss_pred CCchHHHHhHhhhhcccccccccccccCCcchhHHHHHH--HHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHHH
Q psy16313 404 VGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFN--ILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICF 481 (1018)
Q Consensus 404 ~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrR--IL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWcF 481 (1018)
.++|+.+.++ +..|-.. . .+.+ ...+|. .+++. ++|||..||+++++++.+|++|||||
T Consensus 96 -------~r~I~~~tP~----~~vfl~~----~--~~~~~~l~~~~~-~~~~~-~~~~~~~Iaa~ll~l~~~E~dAFW~f 156 (294)
T 3qwl_A 96 -------VRFVSDATPQ----AEVYLRM----Y--QLESGKLPRSPS-FPLEP-DDEVFLAIAKAMEEMVEDSVDCYWIT 156 (294)
T ss_dssp -------TTSCCTTSCH----HHHHHHH----H--HHHHTCCCSSTT-SCCCH-HHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred -------hhhhhccCch----HHHHHHH----H--Hccccccccccc-CCccc-chhhHHHHHHHHHHHhCCHHHHHHHH
Confidence 2344443222 1111110 0 0000 111221 13443 55999999999999999999999999
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcCC
Q psy16313 482 CALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLP 561 (1018)
Q Consensus 482 ~~LMer~~~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~ 561 (1018)
++||+++.++|..++.|+... ++.||+.++|+||+||++.|+.+.+++.+||+++|+++||+++++||||++|+.+.
T Consensus 157 ~~Lm~~l~~~f~~~~~gl~~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~ 233 (294)
T 3qwl_A 157 RRFVNQLNTKYRDSLPQLPKA---FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSC 233 (294)
T ss_dssp HHHHHHHHTTTTTTGGGHHHH---HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhCCChhHHHHH---HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCc
Confidence 999999888888888888654 48999999999999999999998888789999999999999999999999999665
Q ss_pred CCCCCCccccccccCCCC
Q psy16313 562 PNPPQGELPLYDVKFEPP 579 (1018)
Q Consensus 562 ~~~~~feL~L~~l~fd~i 579 (1018)
......+++++...-+.|
T Consensus 234 ~~l~~valAiL~~~r~~L 251 (294)
T 3qwl_A 234 KILVFVAVEILLTFKIKV 251 (294)
T ss_dssp THHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444445566666554443
No 8
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=97.80 E-value=2.1e-05 Score=71.83 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=64.3
Q ss_pred ccceecccccccCcccccccccCCC-CCcHHHHHHHHHHHhccC-CCeeEEEEeecCCCCccccccCCchhhHHHhhhcC
Q psy16313 144 QSPQQSMKYDGMQQSECRKFSVDPQ-ITSYEVLYSLLAKAFDVR-KEFSICYRVLDDCNQETFLPLLSDYELDAAIQNAS 221 (1018)
Q Consensus 144 ~v~~~~kk~~~~~~~e~r~f~vdp~-it~~~~l~~~l~~af~~~-~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s 221 (1018)
.|-||+ | ...|+|.||+|+. .++||.|+.++.+.|.|. .+|.|+|.-. .| =.||..+|=+|--|+.+|
T Consensus 6 ~l~vKs-k----f~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~--dG--DLlpInnDdnl~~Al~~a- 75 (86)
T 1wmh_B 6 IVEVKS-K----FDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDA--HG--DLLPLTNDDSLHRALASG- 75 (86)
T ss_dssp EEEEEE-E----ETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECT--TS--CEEECCSHHHHHHHTTSS-
T ss_pred EEEEEe-e----cCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECC--CC--CEeeecCHHHHHHHHHhC-
Confidence 466666 3 4579999999976 789999999999999994 4899999954 34 379999999999999977
Q ss_pred CCceEeeee
Q psy16313 222 DPCLCLRID 230 (1018)
Q Consensus 222 ~p~l~l~v~ 230 (1018)
+|+|+|-|-
T Consensus 76 ~plLRl~Iq 84 (86)
T 1wmh_B 76 PPPLRLLVQ 84 (86)
T ss_dssp SSCEEEEEE
T ss_pred CCcEEEEEE
Confidence 888888764
No 9
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=96.77 E-value=0.0026 Score=59.83 Aligned_cols=84 Identities=26% Similarity=0.286 Sum_probs=62.7
Q ss_pred Cccceeccccc---ccCcccccccccCCC----C------CcHHHHHHHHHHHhc-cC-CCeeEEEEeecCCCCcccccc
Q psy16313 143 PQSPQQSMKYD---GMQQSECRKFSVDPQ----I------TSYEVLYSLLAKAFD-VR-KEFSICYRVLDDCNQETFLPL 207 (1018)
Q Consensus 143 ~~v~~~~kk~~---~~~~~e~r~f~vdp~----i------t~~~~l~~~l~~af~-~~-~~f~i~y~~~d~~g~~~yl~l 207 (1018)
++-.+.||-|= .....|+|.|++|.+ - +||+.|+..+.+.|. |+ .+|.|+|+ |..|.-| ++
T Consensus 2 ~~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~--DedGDlI--ti 77 (102)
T 2kkc_A 2 PHMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR--AERGDLV--AF 77 (102)
T ss_dssp -CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTTCCEE--EE
T ss_pred CCceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEE--CCCCCEE--Ee
Confidence 34445565453 234689999999743 2 589999999999994 55 47999998 6777654 56
Q ss_pred CCchhhHHHhhhcCCCceEeeee
Q psy16313 208 LSDYELDAAIQNASDPCLCLRID 230 (1018)
Q Consensus 208 ~sdwdldaa~~~~s~p~l~l~v~ 230 (1018)
-||=||--|+.++.+-.|+|-|.
T Consensus 78 SsDeEL~~Al~~~~~~~lRlyVk 100 (102)
T 2kkc_A 78 SSDEELTMAMSYVKDDIFRIYIK 100 (102)
T ss_dssp CSHHHHHHHHHHCCSSEEEEEEE
T ss_pred cCHHHHHHHHHhcCCCeEEEEEE
Confidence 79999999999988667766653
No 10
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=96.76 E-value=0.0008 Score=72.41 Aligned_cols=59 Identities=3% Similarity=0.187 Sum_probs=54.6
Q ss_pred CCCCchHHHHHHHHHHHhHHHHHHcCCChhHHHHHHHHHhhhcCHHHHHHHHHHHHHHH
Q psy16313 945 GGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYESY 1003 (1018)
Q Consensus 945 g~gnpf~lf~~l~ll~~~r~~i~~~~~d~~~~~~~f~~~~~~h~~~~vl~~ar~l~~~y 1003 (1018)
..|.-|++|+|+|+|..+|+.||+...|++++..+++++-...|+..|+.+|..||.+|
T Consensus 231 ~~g~~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~ 289 (292)
T 4hl4_A 231 ACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQF 289 (292)
T ss_dssp HSCTTHHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHS
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHC
Confidence 34556999999999999999999999999999999999999999999999999999876
No 11
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=96.75 E-value=0.00069 Score=76.36 Aligned_cols=55 Identities=27% Similarity=0.516 Sum_probs=50.7
Q ss_pred CchHHHHHHHHHHHhHHHHHHcCCChhHHHHHHHHHhhhc----CHHHHHHHHHHHHHHHH
Q psy16313 948 NPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKH----NVHKVLNEARKRYESYL 1004 (1018)
Q Consensus 948 npf~lf~~l~ll~~~r~~i~~~~~d~~~~~~~f~~~~~~h----~~~~vl~~ar~l~~~yl 1004 (1018)
+.|++|+|+|+|..+|+.||+ |||.++.++++++-.+| ++..+|.+|..+...|=
T Consensus 325 ~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~ 383 (396)
T 1fkm_A 325 NEFHVFVCAAFLIKWSDQLME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYK 383 (396)
T ss_dssp HHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHh
Confidence 689999999999999999996 99999999999998864 99999999999888773
No 12
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=96.40 E-value=0.0028 Score=69.13 Aligned_cols=58 Identities=10% Similarity=0.350 Sum_probs=51.9
Q ss_pred CCCCchHHHHHHHHHHHhHHHHHHcCCCh-hHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHh
Q psy16313 945 GGGNPFLMFLCISVLCQHSEHIMNHHMDY-NEMAIYFDKMVRKHNVHKVLNEARKRYESYLS 1005 (1018)
Q Consensus 945 g~gnpf~lf~~l~ll~~~r~~i~~~~~d~-~~~~~~f~~~~~~h~~~~vl~~ar~l~~~yl~ 1005 (1018)
.+|..|++|+|+|+|..||+.||+ +|+ .+|.++++.+-. .|+..||++|..|+.+|-.
T Consensus 230 ~~~~~~l~~valAiL~~~r~~Ll~--~~~~~~il~~Lq~lp~-~di~~ll~~A~~l~~~~~~ 288 (294)
T 3qwl_A 230 SGSCKILVFVAVEILLTFKIKVMA--LNSAEKITKFLENIPQ-DSSDAIVSKAIDLWHKHCG 288 (294)
T ss_dssp TTCSTHHHHHHHHHHHHTHHHHHH--CCSHHHHHHHHTTCCS-TTHHHHHHHHHHHHHHHHC
T ss_pred hCCchHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999997 666 899999998874 5799999999999999854
No 13
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.35 E-value=0.0093 Score=54.79 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=60.6
Q ss_pred CCCccceecccccccCcccccccccCCCCCcHHHHHHHHHHHhcc--CCCeeEEEEeecCCCCccccccCCchhhHHHhh
Q psy16313 141 SGPQSPQQSMKYDGMQQSECRKFSVDPQITSYEVLYSLLAKAFDV--RKEFSICYRVLDDCNQETFLPLLSDYELDAAIQ 218 (1018)
Q Consensus 141 s~~~v~~~~kk~~~~~~~e~r~f~vdp~it~~~~l~~~l~~af~~--~~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~ 218 (1018)
|+.+|+||| -+. .+.|.|.|+|.| +|+.|+.-++..|.+ +..|+|.|. |+.|. +..+.||=||+.||-
T Consensus 3 ~~~~vkvK~-~~~----gdi~~~~v~~~i-~~~~L~~kv~~~~~~~~~~~f~lky~--DEeGD--~itisSd~EL~eAl~ 72 (89)
T 1vd2_A 3 LGSQVRVKA-YYR----GDIMITHFEPSI-SFEGLCNEVRDMCSFDNEQLFTMKWI--DEEGD--PCTVSSQLELEEAFR 72 (89)
T ss_dssp CSSCEEEEE-ESS----SCEEEEEECTTC-CHHHHHHHHHHHTTCCSSCCEEEEEC--CSSSC--CEECCSHHHHHHHHH
T ss_pred CCCeEEEEE-EeC----CeEEEEECCCCC-CHHHHHHHHHHHhCCCCCCeEEEEEE--CCCCC--cccccCHHHHHHHHH
Confidence 455677777 333 459999999975 899999999999998 466999998 55554 678899999999997
Q ss_pred ---hcCCCceEeee
Q psy16313 219 ---NASDPCLCLRI 229 (1018)
Q Consensus 219 ---~~s~p~l~l~v 229 (1018)
.-.+.=|.|-|
T Consensus 73 l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 73 LYELNKDSELLIHV 86 (89)
T ss_dssp HHHHTSCCCEEEEE
T ss_pred HHHccCCCCEEEEE
Confidence 34455454443
No 14
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=96.31 E-value=0.0082 Score=57.70 Aligned_cols=71 Identities=30% Similarity=0.364 Sum_probs=57.1
Q ss_pred cCcccccccccC----CCC------CcHHHHHHHHHHHh-ccCC-CeeEEEEeecCCCCccccccCCchhhHHHhhhcCC
Q psy16313 155 MQQSECRKFSVD----PQI------TSYEVLYSLLAKAF-DVRK-EFSICYRVLDDCNQETFLPLLSDYELDAAIQNASD 222 (1018)
Q Consensus 155 ~~~~e~r~f~vd----p~i------t~~~~l~~~l~~af-~~~~-~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s~ 222 (1018)
....|+|.|++| |.. .||+.|+..+.+.| .|++ +|.|+|+ |..|.-| ++-||=+|--|+.++.+
T Consensus 32 ~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~Yk--DEdGDlI--tISsDeEL~~Al~~~~~ 107 (117)
T 2ktr_A 32 EAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYR--AERGDLV--AFSSDEELTMAMSYVKD 107 (117)
T ss_dssp SCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTTCCEE--EECSHHHHHHHHHHCCS
T ss_pred CCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEE--CCCCCEE--EecCHHHHHHHHHhcCC
Confidence 356899999996 333 69999999999999 7764 7999998 6677654 56799999999998875
Q ss_pred CceEeee
Q psy16313 223 PCLCLRI 229 (1018)
Q Consensus 223 p~l~l~v 229 (1018)
-.|+|-|
T Consensus 108 ~~lRlyV 114 (117)
T 2ktr_A 108 DIFRIYI 114 (117)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 5666655
No 15
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=96.23 E-value=0.0032 Score=69.12 Aligned_cols=59 Identities=17% Similarity=0.468 Sum_probs=52.3
Q ss_pred CCCCCc---hHHHHHHHHHHHhHHHHHHcCCChhHHHHHHHHHhhhc----CHHHHHHHHHHHHHHH
Q psy16313 944 FGGGNP---FLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKH----NVHKVLNEARKRYESY 1003 (1018)
Q Consensus 944 ~g~gnp---f~lf~~l~ll~~~r~~i~~~~~d~~~~~~~f~~~~~~h----~~~~vl~~ar~l~~~y 1003 (1018)
|..|++ |++|+|+|+|..+|+.||+ .+||.++.++++++-..+ ++..+|++|..+...|
T Consensus 271 l~~g~~~~~~~~~v~~AiL~~~~~~ll~-~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~~~ 336 (345)
T 2qfz_A 271 QSEPDGFSHFHLYVCAAFLVRWRKEILE-EKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAF 336 (345)
T ss_dssp TTSTTTTTTHHHHHHHHHHHHTHHHHHH-CCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCChhHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHHHH
Confidence 455665 8999999999999999998 489999999999988764 7999999999999887
No 16
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=95.65 E-value=0.0018 Score=70.62 Aligned_cols=40 Identities=18% Similarity=0.397 Sum_probs=37.3
Q ss_pred cccccCCCCeeehhHHHHHHhhcccChhHHHHHHHHHhhc
Q psy16313 2 VLEKEKADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSS 41 (1018)
Q Consensus 2 ~l~~~~~~~l~F~~r~lL~~fkref~~~d~~~lwE~~w~~ 41 (1018)
||++.+....+||+||++.+|.++|++++++++|+++|+.
T Consensus 213 hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~ 252 (331)
T 3qye_A 213 HLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ 252 (331)
T ss_dssp HHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC
Confidence 5777888888999999999999999999999999999986
No 17
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=95.09 E-value=0.013 Score=64.42 Aligned_cols=54 Identities=15% Similarity=0.308 Sum_probs=49.9
Q ss_pred CCCCchHHHHHHHHHHHhHHHHHHcCCChhHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy16313 945 GGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRY 1000 (1018)
Q Consensus 945 g~gnpf~lf~~l~ll~~~r~~i~~~~~d~~~~~~~f~~~~~~h~~~~vl~~ar~l~ 1000 (1018)
..|..|++++|+|||..+|+.||+ ||+.+|.+|++++-...++..++..|.+++
T Consensus 256 ~eg~~~l~~valaiL~~~~~~Ll~--~d~~~il~~L~~lp~~~d~~~l~~~a~~l~ 309 (334)
T 2qq8_A 256 RDGEEFLFRTALGILKLFEDILTK--MDFIHMAQFLTRLPEDLPAEELFASIATIQ 309 (334)
T ss_dssp HHCHHHHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHSCCTTCCHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHhCCCcCCHHHHHHHHHHcc
Confidence 457899999999999999999997 699999999999999899999999998865
No 18
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=93.83 E-value=0.053 Score=58.58 Aligned_cols=53 Identities=13% Similarity=0.397 Sum_probs=45.5
Q ss_pred CCCCchHHHHHHHHHHHhHHHHHHcCCChhHHHHHHH-HHhhh----cCHHHHHHHHHHH
Q psy16313 945 GGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFD-KMVRK----HNVHKVLNEARKR 999 (1018)
Q Consensus 945 g~gnpf~lf~~l~ll~~~r~~i~~~~~d~~~~~~~f~-~~~~~----h~~~~vl~~ar~l 999 (1018)
..|..|++++|+|+|..+|+.||+ +|+.++.++|. .+-.. .|+..+++.|..+
T Consensus 217 ~~g~~~l~~v~lail~~~~~~Ll~--~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 217 CEGLNIIFHVALALLKTSKEDLLQ--ADFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp HHCTTHHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred HCCcHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 457899999999999999999998 59999999997 44443 4789999999766
No 19
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=87.41 E-value=0.67 Score=43.49 Aligned_cols=89 Identities=24% Similarity=0.325 Sum_probs=71.2
Q ss_pred cccccccCCCccceecccccccCccccccccc-CCCCCcHHHHHHHHHHHhccCCCeeEEEEeecCCCCccccccCCchh
Q psy16313 134 GILKSCASGPQSPQQSMKYDGMQQSECRKFSV-DPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYE 212 (1018)
Q Consensus 134 ~~~~~~~s~~~v~~~~kk~~~~~~~e~r~f~v-dp~it~~~~l~~~l~~af~~~~~f~i~y~~~d~~g~~~yl~l~sdwd 212 (1018)
|+..-++-.+.|.+|| ....|.+.|-| |+.-+++|.|...+..-|+|. +|.|.|. |+.|.+| .+.|+=+
T Consensus 4 ~~~~~~~m~~~v~lkV-----~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~-~~~IkY~--DEenD~V--~i~Sq~E 73 (101)
T 1wj6_A 4 GSSGPHSMEPQVTLNV-----TFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-TIQIKYL--DEENEEV--SINSQGE 73 (101)
T ss_dssp SSCCCCSSCSCEEEEE-----EETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS-SBCCEEE--CTTSCEE--CCCSHHH
T ss_pred CCCCccccCccEEEEE-----EEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC-ceEEEEe--cCCCCEE--EEecHHH
Confidence 3344456677888998 56778999999 999999999999999999997 7999996 7777775 6689999
Q ss_pred hHHHhhhcCCCceEeeeecc
Q psy16313 213 LDAAIQNASDPCLCLRIDFV 232 (1018)
Q Consensus 213 ldaa~~~~s~p~l~l~v~~~ 232 (1018)
+..|+-.|-+.==+|++.+.
T Consensus 74 ~eEAlkva~k~~n~L~m~V~ 93 (101)
T 1wj6_A 74 YEEALKMAVKQGNQLQMQVH 93 (101)
T ss_dssp HHHHHHHHHHHTSEEEEECC
T ss_pred HHHHHHHhccCCCEEEEEEe
Confidence 99999877774444666553
No 20
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.33 E-value=0.94 Score=41.15 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=49.8
Q ss_pred CCCCcHHHHHHHHHHHhccC-CCeeEEEEeecCCCCccccccCCchhhHHHhhhcCCCceEeeee
Q psy16313 167 PQITSYEVLYSLLAKAFDVR-KEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRID 230 (1018)
Q Consensus 167 p~it~~~~l~~~l~~af~~~-~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s~p~l~l~v~ 230 (1018)
|.=.+|..|+..|.+.+.+. ..-.+||+..| .|+ +. +++|=||+.|...+.+.+|.|.++
T Consensus 21 p~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~-s~~--~v-i~~d~dl~~aw~~~~n~~LtL~C~ 81 (83)
T 1oey_A 21 QPGLPYSQVRDMVSKKLELRLEHTKLSYRPRD-SNE--LV-PLSEDSMKDAWGQVKNYCLTLWCE 81 (83)
T ss_dssp CTTCCHHHHHHHHHHHTTCCGGGCCEEECCTT-CSS--CE-ECCTTTHHHHHTTCBTTEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHhCCCcceeEEEeeCCC-CCC--ee-ccChHHHHHHHHhccCCcEEEEEe
Confidence 55568999999999999994 45889998873 333 33 999999999999999999999875
No 21
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=82.43 E-value=1.4 Score=40.34 Aligned_cols=80 Identities=25% Similarity=0.368 Sum_probs=63.6
Q ss_pred CCccceecccccccCccccccccc-CCCCCcHHHHHHHHHHHhccCCCeeEEEEeecCCCCccccccCCchhhHHHhhhc
Q psy16313 142 GPQSPQQSMKYDGMQQSECRKFSV-DPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNA 220 (1018)
Q Consensus 142 ~~~v~~~~kk~~~~~~~e~r~f~v-dp~it~~~~l~~~l~~af~~~~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~ 220 (1018)
.+.|.+|| ....|.+.|-| |+.-++++.|...+..-|+|. +|.|.|. |+.|.+| .+.|+=++..|+-.|
T Consensus 4 ~~~v~lkV-----~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~-~~~ikY~--DEenD~v--~i~Sq~E~eEAlkva 73 (87)
T 2bkf_A 4 EPQVTLNV-----TFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-TIQIKYL--DEENEEV--SINSQGEYEEALKMA 73 (87)
T ss_dssp CCCEEEEE-----EETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-SEEEEEE--CTTSCEE--EECSHHHHHHHHHHH
T ss_pred CceEEEEE-----EEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC-ceEEEEE--cCCCCEE--EEecHHHHHHHHHHh
Confidence 45677777 45678899999 999999999999999999997 7999995 7777775 568999999999877
Q ss_pred CCCceEeeeec
Q psy16313 221 SDPCLCLRIDF 231 (1018)
Q Consensus 221 s~p~l~l~v~~ 231 (1018)
-++==+|++.+
T Consensus 74 ~k~~n~L~m~v 84 (87)
T 2bkf_A 74 VKQGNQLQMQV 84 (87)
T ss_dssp HHTTTEEEEEE
T ss_pred ccCCCEEEEEE
Confidence 66433354443
No 22
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=79.85 E-value=2 Score=40.11 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=49.1
Q ss_pred ccccccccCCCCCcHHHHHHHHHHHhccC------CCeeEEEEeecCCCCccccccCCchhhHHHhhhcC
Q psy16313 158 SECRKFSVDPQITSYEVLYSLLAKAFDVR------KEFSICYRVLDDCNQETFLPLLSDYELDAAIQNAS 221 (1018)
Q Consensus 158 ~e~r~f~vdp~it~~~~l~~~l~~af~~~------~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~s 221 (1018)
.+++..-|-|+|+ |..|..-+.+-|.+. ..+.|.|+-- .| =|+.|.||=||+-||.++.
T Consensus 22 ~d~~~i~V~~~i~-f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDE--dG--D~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 22 SEIFTLLVEKVWN-FDDLIMAINSKISNTHNNNISPITKIKYQDE--DG--DFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp CEEEEEEECTTCC-HHHHHHHHHHHHHHHCSSCCCCCCCEEEECS--SS--CEEEECSHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCC-HHHHHHHHHHHHcCCccccccceeEEEEEcC--CC--CEEEEcCHHHHHHHHHHHH
Confidence 6899999999997 888888888888874 4578999764 44 5899999999999999753
No 23
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=64.46 E-value=6.7 Score=35.06 Aligned_cols=57 Identities=18% Similarity=0.114 Sum_probs=46.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHHhccC------CCeeEEEEeecCCCCccccccCCchhhHHHhhhc
Q psy16313 159 ECRKFSVDPQITSYEVLYSLLAKAFDVR------KEFSICYRVLDDCNQETFLPLLSDYELDAAIQNA 220 (1018)
Q Consensus 159 e~r~f~vdp~it~~~~l~~~l~~af~~~------~~f~i~y~~~d~~g~~~yl~l~sdwdldaa~~~~ 220 (1018)
+++..-|-|+|| |..|..-+.+-|.+. ..+.|.|+-. .| =|+.|.||=||+-|+.++
T Consensus 2 D~~~i~V~~~i~-f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDE--dG--D~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 2 EIFTLLVEKVWN-FDDLIMAINSKISNTHNNNISPITKIKYQDE--DG--DFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp CEEEEECTTCCC-SHHHHHHHHHHTTTTTSSCSCSTTCCEEEET--TT--EEEECCSTTHHHHHHHHH
T ss_pred CEEEEEeCCCCC-HHHHHHHHHHHHcccccccccceeEEEEEcC--CC--CEEEEcCHHHHHHHHHHH
Confidence 345566778877 888888888888875 6799999866 44 699999999999999975
No 24
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=23.50 E-value=2.3e+02 Score=23.95 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=38.1
Q ss_pred CCchHHHHHHHHHHHhHHHHHHc--CCChhHHHHHHHHHhhhcCH---HHHHHHHHHHHHHHHhhc
Q psy16313 947 GNPFLMFLCISVLCQHSEHIMNH--HMDYNEMAIYFDKMVRKHNV---HKVLNEARKRYESYLSAF 1007 (1018)
Q Consensus 947 gnpf~lf~~l~ll~~~r~~i~~~--~~d~~~~~~~f~~~~~~h~~---~~vl~~ar~l~~~yl~~~ 1007 (1018)
-|+|+||. .++|+.|... ++..+||.+.--+|=+.-.. ..-..+|..+-.+|.+.+
T Consensus 7 ~naf~lf~-----~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~ 67 (79)
T 3u2b_C 7 MNAFMVWS-----QIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADY 67 (79)
T ss_dssp CCHHHHHH-----HHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHH-----HHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 38999995 4888888865 68889988776665443221 234566777777776654
Done!