RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16313
(1018 letters)
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 196 bits (500), Expect = 6e-56
Identities = 49/264 (18%), Positives = 89/264 (33%), Gaps = 37/264 (14%)
Query: 325 EFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKS 384
+F+Q L G ELR + + GI +R + WK + P + R +RK
Sbjct: 28 KFKQLLA--GPNTDLEELRRLSW-SGIPKPVRPMTWKLLSGYLPANVD--RRPATLQRKQ 82
Query: 385 EEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNIL 444
+EY+ + + D + D+ R + IL
Sbjct: 83 KEYFAFIEHYYDSRNDEVH----QDTYRQIHIDIPRMSPEALIL----QPKVTEIFERIL 134
Query: 445 TTYALNHPAVSYCQGMSDLASPLLVTMSN------------------------EAHAYIC 480
+A+ HPA Y QG++DL +P V EA Y C
Sbjct: 135 FIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWC 194
Query: 481 FCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEM 540
L+ + N+ + + + L + + + + +L H+ L + +RW+ +
Sbjct: 195 MSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLL 254
Query: 541 KREFAFNDALIMLEVMWSSLPPNP 564
RE + + + S
Sbjct: 255 MREVPLRCTIRLWDTYQSEPDGFS 278
Score = 50.3 bits (120), Expect = 2e-06
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 3 LEKEKADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNP 46
L++ + L + +RW+ + RE + + + S
Sbjct: 235 LDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFS 278
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 185 bits (470), Expect = 2e-51
Identities = 53/266 (19%), Positives = 100/266 (37%), Gaps = 40/266 (15%)
Query: 325 EFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKS 384
+F L II ++LR + + GI R VVWK ++ P ++ K + + +RK
Sbjct: 10 KFDNILKD-KTIINQQDLRQISW-NGIPKIHRPVVWKLLIGYLP--VNTKRQEGFLQRKR 65
Query: 385 EEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNIL 444
+EY + + D+ RT+ H Y SL IL
Sbjct: 66 KEYRDSLKHTFSDQHSRDIP-----TWHQIEIDIPRTNPHIPLYQFKS---VQNSLQRIL 117
Query: 445 TTYALNHPAVSYCQGMSDLASPLLVTM----------------------------SNEAH 476
+A+ HPA Y QG++DL +P T EA
Sbjct: 118 YLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEAD 177
Query: 477 AYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWL 536
+ C L+ ++ N++ + ++ ++L+ ++ Y + ++ + + + +RW+
Sbjct: 178 TFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWM 237
Query: 537 LLEMKREFAFNDALIMLEVMWSSLPP 562
+ REF + M + S
Sbjct: 238 NCLLMREFQMGTVIRMWDTYLSETSQ 263
Score = 50.0 bits (119), Expect = 2e-06
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 3 LEKEKADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPP 44
+ E + + + +RW+ + REF + M + S
Sbjct: 222 FQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQ 263
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 112 bits (281), Expect = 6e-27
Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 11/208 (5%)
Query: 335 QIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTW 394
+ SR++R + + GI PS+R VW + E E + +++E ++ T
Sbjct: 34 TMWCSRKVRDLWW-QGIPPSVRGKVWSLAIGN--ELNITHELFDICLARAKERWRSLSTG 90
Query: 395 KDLLKRGQM---VGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNH 451
++ D +++ D+ RT + + L +IL Y
Sbjct: 91 GSEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQ--QGGPYHDMLHSILGAYTCYR 148
Query: 452 PAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLG-RNFLVDGITMTQRFQHLADGL 510
P V Y QGMS +A+ L++ + + A A+I F L+ + F + + +
Sbjct: 149 PDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVF 207
Query: 511 -EYYHPKFYEYLKSHQADDLLYCYRWLL 537
E PK + + K + +Y W+
Sbjct: 208 FEENLPKLFAHFKKNNLTPDIYLIDWIF 235
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 106 bits (267), Expect = 3e-25
Identities = 37/202 (18%), Positives = 75/202 (37%), Gaps = 29/202 (14%)
Query: 338 QSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDL 397
+ + L T++ G+ +LR VW+ + + + + Y+ L
Sbjct: 22 RPKGLSTLVK-SGVPEALRAEVWQLLAGCH------------DNQAMLDRYR------IL 62
Query: 398 LKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYC 457
+ + ++ +D+ RT H ++ + SL+ I Y++ + YC
Sbjct: 63 ITKDSAQ------ESVITRDIHRTFPAHDYFKDTGGD-GQESLYKICKAYSVYDEDIGYC 115
Query: 458 QGMSDLASPLLVTMSNEAHAYICFCALMRRLG-RNFLVDGITMTQRFQ-HLADGLEYYHP 515
QG S LA+ LL+ M E A+ +M G R+ + L ++ P
Sbjct: 116 QGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLP 174
Query: 516 KFYEYLKSHQADDLLYCYRWLL 537
+ + + +Y +W L
Sbjct: 175 DLHSHFSDLNLEAHMYASQWFL 196
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 105 bits (263), Expect = 1e-24
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 21/203 (10%)
Query: 337 IQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKD 396
++ + + G+ R +WK + + + + +K+
Sbjct: 47 FDMEKMHSAVG-QGVPRHHRGEIWKFLAEQF----------HLKHQFPSKQQPKDVPYKE 95
Query: 397 LLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSY 456
LLK+ + D+ RT H +++ +SL+NIL Y+L V Y
Sbjct: 96 LLKQLTSQ------QHAILIDLGRTFPTHPYFSAQLGA-GQLSLYNILKAYSLLDQEVGY 148
Query: 457 CQGMSDLASPLLVTMSNEAHAYICFCALMRRLG-RNFLVDGITMTQRFQ-HLADGLEYYH 514
CQG+S +A LL+ M +E A+ LM +G R + + Q L+ L YH
Sbjct: 149 CQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH 207
Query: 515 PKFYEYLKSHQADDLLYCYRWLL 537
Y +L+ H+ LY W L
Sbjct: 208 RDLYNHLEEHEIGPSLYAAPWFL 230
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 100 bits (249), Expect = 3e-23
Identities = 27/225 (12%), Positives = 63/225 (28%), Gaps = 29/225 (12%)
Query: 334 GQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDT 393
+ + +L T + R +VWK +L + P + + + E+Y +
Sbjct: 35 DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILP--PHHESHAKVMMYRKEQYLDVLHA 92
Query: 394 WKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPA 453
K VR T + V+ + L + + + P
Sbjct: 93 LKV-----------------VRFVSDATPQAEVYLR-------MYQLESGKLPRSPSFPL 128
Query: 454 VSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYY 513
+ +A + + + Y + +L + + + F+ L
Sbjct: 129 EPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY---LNLE 185
Query: 514 HPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWS 558
+ +L+ A L W + + + + S
Sbjct: 186 DGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVS 230
Score = 38.5 bits (89), Expect = 0.007
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 944 FGGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYESY 1003
G L+F+ + +L +M ++ E F + + + + ++++A + +
Sbjct: 229 VSGSCKILVFVAVEILLTFKIKVMA--LNSAEKITKFLENIPQDSSDAIVSKAIDLWHKH 286
Query: 1004 LSA-FHLS 1010
H S
Sbjct: 287 CGTPVHSS 294
Score = 32.7 bits (74), Expect = 0.52
Identities = 5/38 (13%), Positives = 9/38 (23%)
Query: 3 LEKEKADDLLYCYRWLLLEMKREFAFNDALIMLEVMWS 40
L A L W + + + + S
Sbjct: 193 LRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVS 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 4e-11
Identities = 85/611 (13%), Positives = 161/611 (26%), Gaps = 190/611 (31%)
Query: 499 MTQRFQHLADGLEYYHPKFYE-------------YLKSHQADDLL-------YCYR--WL 536
+ D L + F + L + D ++ R W
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 537 LL----EMKREFAFNDAL-IMLEVMWSSL--PPNPPQGELPLYDVKFEPPC-DPAPNSPS 588
LL EM ++F + L I + + S + P +Y + + D +
Sbjct: 71 LLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 589 PSPRENQYTKVCAIRRQTTSATSSPFKLNATLD------ESPLAQRRKQDSAKSRTYPCV 642
R Y K +R+ + N +D ++ +A D S C
Sbjct: 130 NVSRLQPYLK---LRQALLELRPAK---NVLIDGVLGSGKTWVAL----DVCLSYKVQCK 179
Query: 643 NETKI--ISTNGILKSCASGPQSPQQSMVQKFTQLTKDNIHKSLEKIN-SQGTEYANHVL 699
+ KI ++ LK+C S P++ + + + Q+ + +S N L
Sbjct: 180 MDFKIFWLN----LKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 700 NRRGSLKMQTAATSTKIVRN------LNEFLNFSKKIAL---NREIREAEDHLVKKIESM 750
R LK + ++ N N F N S KI L +++ + S+
Sbjct: 235 RRL--LKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 751 NSQVKLLVESSPEDDDSSEYF-------------------PMTCS-ITQELRLELENLNR 790
+ L D+ P S I + +R + L
Sbjct: 292 DHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR---DGLAT 343
Query: 791 --NVLQDPEPQLADDIESGFESTNSSHAQYHLTGDEIF-------------IWENPLDET 835
N +L IES + + +F IW + +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 836 KDSALPESCSAHSIASNKSSFESDNDMTQSYSSTTSGADSIHSGDSSQQIREVAHSSFES 895
+ + S E + I
Sbjct: 404 VMVVVNKLH-------KYSLVEKQPKESTIS---------IP------------------ 429
Query: 896 DNDMTQSYSSTTSGADSIHSGDSSQQIREVAHVINSRQSRVGLPPPNEFGGGNPFLMFLC 955
+ ++H + I + ++ + S L PP +
Sbjct: 430 --SIYLELKVKLENEYALH-----RSIVDHYNIPKTFDSD-DLIPPYLDQ-------YFY 474
Query: 956 ISVLCQHSEHIMNHHMDYNEMA--------IYFD------KMVR-------KHNVHKVLN 994
HI HH+ E ++ D K+ ++ L
Sbjct: 475 --------SHIG-HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 995 EARKRYESYLS 1005
+ + Y+ Y+
Sbjct: 526 QLKF-YKPYIC 535
Score = 55.2 bits (132), Expect = 1e-07
Identities = 92/570 (16%), Positives = 170/570 (29%), Gaps = 142/570 (24%)
Query: 301 GALSYMEDNMAALYLPPRSPLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVW 360
G Y ++ +++ +++ + + D I+ E+ +I R+ W
Sbjct: 12 GEHQYQYKDILSVFEDAF--VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 361 KHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLR 420
L E M ++ +E R Y L K ++ M+ + Y+ ++D L
Sbjct: 70 --TLLSKQEEMV-QKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRM-YIE---QRDRLY 120
Query: 421 TDRHHVFYAGADDNCNVISLFNILTTYALN---HPAVSYCQGM-----SDLAS------P 466
D + VF A N + + + L L V G+ + +A
Sbjct: 121 ND-NQVF---AKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSGKTWVALDVCLSYK 175
Query: 467 LLVTMSNEAHAYICFCALMRRLGRNFLVDGI-TMTQRFQHLAD--GLEYYHPKFYEYLKS 523
+ M + ++ L + + M Q+ + D L+
Sbjct: 176 VQCKMDFKIF-WL-------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 524 HQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVK-FEPPCDP 582
H L R LL + + L++L + ++ F C
Sbjct: 228 HSIQAEL---RRLLKSKP----YENCLLVLLNVQNA------------KAWNAFNLSC-- 266
Query: 583 APNSPSPSPRENQYTKVCAIRR-----------QTTSATSSPFKLNATLDESPLAQRRKQ 631
K+ R TT + + T DE + K
Sbjct: 267 ---------------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKY 310
Query: 632 DSAKSRTYPCVNETKIIS---TNGILKSCASGPQSPQQSMVQKFTQLTKDNIHKSLEKIN 688
+ + P E + + I +S G + + + D + +E
Sbjct: 311 LDCRPQDLP--REVLTTNPRRLSIIAESIRDGL-----ATWDNWKHVNCDKLTTIIES-- 361
Query: 689 SQGTEYANHVLNRRGSLKMQTAATSTKIVRNLNEFLNFSKKI---AL----NREIREAED 741
SL + A K+ L+ F S I L I+
Sbjct: 362 ---------------SLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVM 405
Query: 742 HLVKKIESMNSQVKLLVESSPEDDDSSEYFPMTCSITQELRLELEN---LNRNVLQDPEP 798
+V K+ LVE P++ S SI EL+++LEN L+R+++
Sbjct: 406 VVVNKLHK-----YSLVEKQPKESTISIP-----SIYLELKVKLENEYALHRSIVDHYNI 455
Query: 799 QLADDIESGFESTNS----SHAQYHLTGDE 824
D + SH +HL E
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Score = 45.2 bits (106), Expect = 1e-04
Identities = 82/550 (14%), Positives = 155/550 (28%), Gaps = 149/550 (27%)
Query: 156 QQSECRKFSVDPQITSYEVLYSLLAKAF----DVRKEFSICYRVLDDCNQETFLPLLSDY 211
Q+ +KF + +Y+ L S + + + + L + NQ + + Y
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-----VFAKY 129
Query: 212 ---------ELDAAIQNASDP--------------CL----CLRIDFVDTLSSG---LDQ 241
+L A+ + CL + L+
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN- 188
Query: 242 DVAECVQPESSLSLMSFTQTKVPLKLQGLIKNQVSIPCSF------IQMLLKT------- 288
+ C PE+ L ++ ++ + +I ++ LLK+
Sbjct: 189 -LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 289 -------DTQVEKTFNI---------FKG-ALSYMEDNMAALYL-PPRSPLNDTEFRQ-F 329
+ + FN+ FK + L L E +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 330 LDPVGQIIQS--RELRTV--IYYGGIEPSLRRVV-----WKHILNVYPEGMSGKERMEYT 380
L + Q RE+ T I S+R + WKH+ +++
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---------NCDKLTTI 358
Query: 381 RRKSEEY---YKLRDTWKDLLKRGQMVGDLAYVTGMVRKDV-LRTDRHHVFYAGADDNCN 436
S + R + L + + T + + +
Sbjct: 359 IESSLNVLEPAEYRKMFDRL--------------SVFPPSAHIPTILLSLIWFDVIKSD- 403
Query: 437 VISLFNILTTYAL--NHPAVSYCQGMSDLASPLLVTMSNEA--HAYICFCALMRRLGRNF 492
V+ + N L Y+L P S + + L V + NE H I + + F
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDH---YNIPKTF 459
Query: 493 LVDGITMTQR----FQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFND 548
D + + H+ +H LK+ + + + +R + L +F F +
Sbjct: 460 DSDDLIPPYLDQYFYSHIG-----HH------LKNIEHPERMTLFRMVFL----DFRFLE 504
Query: 549 ALIMLEVMWSSLPPNPPQGELP-LYDVKFEPP--CDPAPNSPSPSPRENQYTKVCAIRRQ 605
I S N L L +KF P CD N P N + +
Sbjct: 505 QKIRH----DSTAWNASGSILNTLQQLKFYKPYICD---NDPKYERLVNAILDF--LPKI 555
Query: 606 TTSATSSPFK 615
+ S +
Sbjct: 556 EENLICSKYT 565
Score = 31.4 bits (70), Expect = 2.3
Identities = 33/292 (11%), Positives = 77/292 (26%), Gaps = 102/292 (34%)
Query: 3 LEKEKADDLLYCYRWLLLEMKREFAFN-DALIM---LEVMWSSLPPNPPQGELPLYDVKF 58
L + + + L F A I L ++W + + +
Sbjct: 363 LNVLEPAEYRKMFDRL-------SVFPPSAHIPTILLSLIWFDVIKSDVMVVV------- 408
Query: 59 EPPCDPAPNSPSPSPRENQYTKVCAIRRQTTSATSS----PFKLNATLDESPLAQRRKQD 114
N+ K + +Q +T S +L L+ R D
Sbjct: 409 -----------------NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 115 SAKSRTYPCVNETKIISTNGILKSCASGPQSPQQSMKY---------DGMQQSECRKFSV 165
Y N K ++ ++ Y ++ E + ++
Sbjct: 452 H-----Y---NIPKTFDSDDLIPPYLDQ---------YFYSHIGHHLKNIEHPE--RMTL 492
Query: 166 DPQI---------------TSYEVLYSLLAKAFDVRKEFSICYR--VLDDCNQETFLPLL 208
+ T++ S+L ++ Y+ + D+ + L+
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-----YKPYICDNDP--KYERLV 545
Query: 209 SDYELDAAIQNASDPCLCLRIDFVDTLSSGLDQDVAECVQPESSLSLMSFTQ 260
+ LD + + + + D L L + + ++ + Q
Sbjct: 546 NAI-LDFLPKIEEN---LICSKYTDLLRIAL-------MAEDEAIFEEAHKQ 586
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 3e-07
Identities = 83/513 (16%), Positives = 129/513 (25%), Gaps = 193/513 (37%)
Query: 3 LEKEKADDLLYCYRWLLLEMKREF-AFND--ALIMLEVMWSSLPPNPPQGELPLYDV--- 56
+E K L E + + ND AL + L + ++
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA------AKLLQENDTTLVKTKELIKN 125
Query: 57 ------KFEPPCDPAPNSP-SPSPRENQYTKVCAIRRQTTSATSSPF----KLNATLDES 105
+ P D NS + E ++ AI F + +E
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGN-AQLVAI-----------FGGQGNTDDYFEE- 172
Query: 106 PLAQRRKQDSAKSRTYPCVNETKIISTNGILKSCASGPQSPQQ----------------- 148
L +TY + I + L ++
Sbjct: 173 -LRDL-------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 149 ------------SMKYDGMQQ-----SECRKFSVDPQ----------------IT----- 170
S G+ Q + P +T
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 171 ---SYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNAS------ 221
S+E + + KA + F I R C E + P S L +I S
Sbjct: 285 ETDSWESFFVSVRKA--ITVLFFIGVR----C-YEAY-PNTS---LPPSILEDSLENNEG 333
Query: 222 DPCLCLRIDFVDTLSSGLDQDVAECV-------QPES---SLSLM----SFTQTKVPLKL 267
P L I S L Q+ + P +SL+ + + P L
Sbjct: 334 VPSPMLSI-------SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 268 QGLI-----------KNQVSIPCSFIQMLLKTDTQVEKTFNIFKGAL--------SYMED 308
GL +Q IP F + LK + F L +
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIP--FSERKLKFSNR-------F---LPVASPFHSHLLVP 434
Query: 309 NMAALYLPPRSPLNDTEFR--QFLDPVGQIIQSRELRTVIYYGGIEPSL------RRVVW 360
A+ + N+ F PV +LR G I + V W
Sbjct: 435 --ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV--LSGSISERIVDCIIRLPVKW 490
Query: 361 K--------HILNVYPEGMSGKERMEYTRRKSE 385
+ HIL+ P G SG + T R +
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVL--THRNKD 521
Score = 53.1 bits (127), Expect = 5e-07
Identities = 63/455 (13%), Positives = 116/455 (25%), Gaps = 178/455 (39%)
Query: 642 VNETKIISTNGILKSCASGPQSPQQSMVQKFTQ--LTKDNIH---KSLEKINSQGTE--- 693
V +K+ + +L + +F L ++IH L + N
Sbjct: 72 VEPSKVGQFDQVLNL-----------CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 694 -----Y--ANHVLNRRGSLKMQTA---ATSTKIVR---------NLNEFLNFSKKIALNR 734
Y A + R K +A A + N +++
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF---------E 171
Query: 735 EIRE---AEDHLVKK-IESMNSQVKLLVESSPEDDDSSEYFPMTCSITQELRLELENLNR 790
E+R+ LV I+ + L E D+ + F +I +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSA---ETLSELIRTTLDAEKVFTQGLNILE----------- 217
Query: 791 NVLQDPEPQLADDIESGFESTNSSHAQYHLTGDEIFIWENPLDETKDSALPESC------ 844
L++P P + S P SC
Sbjct: 218 -WLENPSNT-------------------------------PDKDYLLSI-PISCPLIGVI 244
Query: 845 -SAHSIASNKSSFESDNDMTQSYSSTTSGADSIHSGDSSQQIREVAHSSFESDNDMTQSY 903
AH + + K + ++ T + + V
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL-----------VT-------------- 279
Query: 904 SSTTSGADSIHS-GDSSQQIREVAHVINSR-Q---SRVGLPPPN-----EFGGGNPFLMF 953
+ + DS S S ++ V I R LPP E G P M
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 954 LCISV-LCQHSEHI--MNHHMDYNEMAIY---------------------FDKMVRK--- 986
++ Q +++ N H+ + + + +RK
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGK-QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 987 ---HNVHKVLNEARKR--YESYL--SA-FHLSCPL 1013
+ ++ RK +L ++ FH L
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFH--SHL 431
Score = 46.6 bits (110), Expect = 5e-05
Identities = 39/262 (14%), Positives = 79/262 (30%), Gaps = 84/262 (32%)
Query: 791 NVLQD------PEP--QLADDIESGFESTNSSHAQYHLTGDEIFIWENPLDETKDSALPE 842
+ LQ+ PEP A D E + ++ L ++ + ++ +K +
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDE--PTTPAELVGKF-LG----YV-SSLVEPSKVGQFDQ 82
Query: 843 SCSAHSIASNKSSFESDNDMTQSYSSTTSGADSIHSGDSSQQIREVAHSSFESDNDMTQS 902
+ ++ + ND IH+ +A + +ND T
Sbjct: 83 -VLNLCLTEFENCYLEGND--------------IHA---------LA-AKLLQENDTTLV 117
Query: 903 ---------YSSTTSGADSIHSGDSSQQIREVAHVINSRQSRVGLPPPNEFGG-GN---- 948
++ +S R V +++ FGG GN
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAV----GEGNAQLVA----IFGGQGNTDDY 169
Query: 949 ------------PFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEA 996
+ L I + ++ +D + F + + N+ + L
Sbjct: 170 FEELRDLYQTYHVLVGDL-IKFSAETLSELIRTTLDAEK---VFTQGL---NILEWLENP 222
Query: 997 RKR-YESYLSAFHLSCPLSISL 1017
+ YL + +SCPL I +
Sbjct: 223 SNTPDKDYLLSIPISCPL-IGV 243
Score = 38.9 bits (90), Expect = 0.012
Identities = 58/413 (14%), Positives = 115/413 (27%), Gaps = 155/413 (37%)
Query: 200 NQETFLPLLSDYELDAAIQNASDPCLCLRIDFVDTLSSGLDQDVAECVQPES----SLSL 255
N + + EL + + D + + L + + + E L++
Sbjct: 165 NTDDYFE-----EL-RDLYQTYHVLV---GDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 256 MSFTQT--KVPLKLQGLIKNQVSIP-------CSFIQMLLKTDTQVEKTFNIFKGALSYM 306
+ + + P L+ +S P ++ + + KGA +
Sbjct: 216 LEWLENPSNTP-DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 307 EDNMAALYLPPRSPLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNV 366
+ + A+ + + + E F V + I TV+++ G+
Sbjct: 275 QGLVTAVAI---AETDSWE--SFFVSVRKAI------TVLFFIGVR-CYE---------A 313
Query: 367 YPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQ---MVGDLAYVTGM----VRKDVL 419
YP +E + +E G M L+ ++ + V+ V
Sbjct: 314 YPNTSLPPSILEDSLENNE---------------GVPSPM---LS-ISNLTQEQVQDYVN 354
Query: 420 RTDRH-----HVFYAGADDNCNVISLFN-----ILTTYALNHPAVSYCQGMSDLASPLLV 469
+T+ H V ISL N +++ P L
Sbjct: 355 KTNSHLPAGKQVE----------ISLVNGAKNLVVS----GPPQ--------SLYG---- 388
Query: 470 TMSNEAHAYICFCALMRRLGRNFLVD--GITMTQRFQHLADGLEYYHPKFY-EYLK---- 522
+R+ +D I ++R KF +L
Sbjct: 389 -----------LNLTLRKAKAPSGLDQSRIPFSER-----------KLKFSNRFLPVASP 426
Query: 523 --SHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYD 573
SH LL + D L+ V + N ++P+YD
Sbjct: 427 FHSH------------LLVPASDLINKD-LVKNNVSF-----NAKDIQIPVYD 461
Score = 35.8 bits (82), Expect = 0.082
Identities = 90/601 (14%), Positives = 153/601 (25%), Gaps = 210/601 (34%)
Query: 337 IQSRELRT-VIYYGGIEPSL------------RRVVWKHILNVYPEGMSGKER------- 376
+ + R + +G +E L + + IL EG + +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 377 ----MEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAG-- 430
+ Y E K GQ L L + H A
Sbjct: 61 VGKFLGYVSSLVEP-----------SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 431 ADDNCNVISLFNILTTY-----ALNHPAVSYCQGMSDLASPLL-VTMSNEAHAYICFCAL 484
+++ ++ ++ Y P S L A F
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSN------SALFRAVGEGNAQLVAIF--- 160
Query: 485 MRRLGRNFLVDGITMTQRFQHLADG-LEYYHPKFYEYLKSHQADDLLYC-YRWLLLEMKR 542
G G Q G + Y F E L+ LY Y L+
Sbjct: 161 ----G------G-------Q----GNTDDY---FEE-LRD------LYQTYHVLV----G 185
Query: 543 EFAFNDALIMLEVMWSSLPPNPPQGELPLY----DVK--FEPPCDPAPNSP----SP-S- 590
+ + L L E ++ ++ E P P+ P S
Sbjct: 186 DL-IKFSAETLS----ELIRTTLDAE-KVFTQGLNILEWLENP-SNTPDKDYLLSIPISC 238
Query: 591 P-----RENQYTKVCAIR-------RQTTSATSSPFK--LNATLDESPLAQRRKQDSAKS 636
P + Y + R + + + A +A+ DS +S
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA----IAE---TDSWES 291
Query: 637 RTYPCVNET-KIISTNGILKSCASGPQSPQQSMVQKFTQLTKDNIHKSLEKINSQGTEYA 695
+ V + ++ G+ A S S+++ SLE N++G
Sbjct: 292 -FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED-----------SLE--NNEGV--P 335
Query: 696 NHVLNRRGSLKMQTAATSTKIVRNLNEFLNFSKKI---------------------ALNR 734
+ +L+ + Q V N L K++ LN
Sbjct: 336 SPMLSISNLTQEQV----QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 735 EIRE--AEDHL-VKKIESMNSQVKLLVESSPEDDDSSEYFPMTC---SITQELRLELENL 788
+R+ A L +I S+ KL S+ + P+ S L
Sbjct: 392 TLRKAKAPSGLDQSRIPF--SERKLKF--------SNRFLPVASPFHS---HL------- 431
Query: 789 NRNVLQDPEPQLADDIESGFESTNSSHAQ---YHLTGDEIFIWENPLDETKDSALPESCS 845
L + D+ S N+ Q Y T D + L S
Sbjct: 432 ----LVPASDLINKDLVKNNVSFNAKDIQIPVYD-TFD----GSD-LRVLSGSISERIVD 481
Query: 846 A 846
Sbjct: 482 C 482
Score = 34.6 bits (79), Expect = 0.21
Identities = 31/162 (19%), Positives = 43/162 (26%), Gaps = 63/162 (38%)
Query: 142 GPQSPQQSMKYDGMQQSECRKFSVDPQITSYEVLYSLLAKAFDVRKE----------FSI 191
G Q Q M GM LY A DV FSI
Sbjct: 1625 GSQE--QGM---GMD------------------LYKTSKAAQDVWNRADNHFKDTYGFSI 1661
Query: 192 CYRVLDDCNQETFLP-------LLSDYELDAAIQNASDPCLCLRIDFVDTLSSGLDQDVA 244
V+++ T + +Y + D L F + +++
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENY-SAMIFETIVDGKLKTEKIFKE-----INEHST 1715
Query: 245 ECV--QPESSLSLMSFTQTKVP------------LKLQGLIK 272
+ LS FTQ P LK +GLI
Sbjct: 1716 SYTFRSEKGLLSATQFTQ---PALTLMEKAAFEDLKSKGLIP 1754
Score = 32.3 bits (73), Expect = 1.0
Identities = 47/275 (17%), Positives = 86/275 (31%), Gaps = 74/275 (26%)
Query: 621 DESPLAQR--RKQDSAKSRTYPCVNETKIISTNGILKSCASGPQSPQQSMVQKFTQLTKD 678
S AQ + D+ TY + I+ N + + G + ++ + + ++ + +
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYG-FSILDIVINNPVNLTIHFGGEKGKR-IRENYSAMIFE 1694
Query: 679 NI---HKSLEKINSQGTEYANHVLNR--RGSLKMQTAATSTKIVRNLNEFLNFSKKIALN 733
I EKI + E++ R +G L T T + L A
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQPAL------TL-ME--KAAF 1744
Query: 734 REIREA----ED-----H-------LVKKIESMN--SQVKLL-------VESSPEDDDSS 768
+++ D H L + M+ S V+++ + P D+
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 769 EYFPMTCSITQELRLELENLNRNVLQDPEPQLADDIESGFEST---------NSSHAQYH 819
+ M +I N R + L +E + T N + QY
Sbjct: 1805 SNYGM-IAI---------NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 820 LTGD----EIFIWENPLDETKD-----SALPESCS 845
GD + N L+ K L +S S
Sbjct: 1855 AAGDLRALDTVT--NVLNFIKLQKIDIIELQKSLS 1887
>3ult_A ICE recrystallization inhibition protein-like Pro; beta-solenoid,
beta-roll, ICE-binding, antifreeze, extracellular,
antifreeze protein; HET: EDO; 1.40A {Lolium perenne}
Length = 133
Score = 34.7 bits (79), Expect = 0.040
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 857 ESDNDMTQSYSSTTSGADSIHSGDSSQQIREVAHSSFESDNDMTQSYSSTTSGADSIHSG 916
E N ++ S ++ SG+ ++ +G+ + I +S S+N + +T +G++ + SG
Sbjct: 3 EQPNTISGSNNTVRSGSKNVLAGNDNTVISGDNNSVSGSNNTVVSGNDNTVTGSNHVVSG 62
Query: 917 DSSQ 920
+
Sbjct: 63 TNHI 66
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.28
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 740 EDHLVKKIESMNSQVKLLV-ESSP 762
E +KK++ + +KL +S+P
Sbjct: 18 EKQALKKLQ---ASLKLYADDSAP 38
Score = 29.9 bits (66), Expect = 2.2
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 300 KGALSYMEDNMAALYLPPRSP---LNDT 324
K AL ++ ++ LY +P + T
Sbjct: 19 KQALKKLQASLK-LYADDSAPALAIKAT 45
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 33.2 bits (77), Expect = 0.40
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 959 LCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYE 1001
+ + E+++ + D EM K + K V E E
Sbjct: 175 VFESLENLLPKYFDK-EMVAEVQKSLEKQAVIFHFEETVLGIE 216
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 33.3 bits (77), Expect = 0.41
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 959 LCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYE 1001
L + + + D ++ K + +H + E K
Sbjct: 222 LIDVVDTCLAGYYDR-DLTDLMAKNMEEHGIQLAFGETVKEVA 263
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 33.2 bits (77), Expect = 0.41
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 959 LCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYE 1001
L E ++ + D E K H V+ VL +E
Sbjct: 177 LIDGHERVLYKYFDK-EFTDILAKDYEAHGVNLVLGSKVAAFE 218
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 32.8 bits (76), Expect = 0.53
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 959 LCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYE 1001
+ + + ++D E + + +N+ E +RYE
Sbjct: 177 VIDILDRPLGVYLDK-EFTDVLTEEMEANNITIATGETVERYE 218
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 32.5 bits (75), Expect = 0.66
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 959 LCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYE 1001
+ + ++ IM ++ + K++V E R E
Sbjct: 188 VVELADQIMPGFTSK-SLSQMLRHDLEKNDVVVHTGEKVVRLE 229
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl
lysine, regulator, developmental protein, metal-binding,
nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB:
2r57_A* 2r5a_A* 2r5m_A*
Length = 265
Score = 31.9 bits (72), Expect = 0.95
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 822 GDEIFIWENPLDETKDSALPESCSAHSIASNKSSFE 857
G F W+ L+ET A P C + + F+
Sbjct: 1 GAMAFDWDAYLEETGSEAAPAKCFKQAQNPPNNDFK 36
>3vbh_A EV71, genome polyprotein, capsid protein VP1; hand-foot-and-mouth
disease, enterovirus uncoating, P factor,
adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71}
PDB: 3vbf_A* 3vbo_A 3vbs_A* 4aed_A* 3vbr_A 3vbu_A
Length = 297
Score = 31.0 bits (69), Expect = 1.8
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 822 GDEIF-IWENPLDETKDSALPESCSAHSIA-SNKSSFESDNDMTQSYSSTTSGADSIHSG 879
GD + + E+ + ++ AL + A + + SS D + + GA S S
Sbjct: 1 GDRVADVIESSIGDSVSRALTHALPAPTGQNTQVSSHRLDTGKVPALQAAEIGASSNASD 60
Query: 880 DSSQQIREVA--HSSFESD 896
+S + R V HS+ E+
Sbjct: 61 ESMIETRCVLNSHSTAETT 79
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle,
signal transduction, methyl-accepting receptor; 2.5A
{Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Length = 309
Score = 30.7 bits (70), Expect = 2.2
Identities = 8/77 (10%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 860 NDMTQSYSSTTSGADSIHSGDSSQQIREVAHSSFESDND----MTQSYSSTTSGADSIHS 915
+++ + + A + Q ++A + ++ +S + S
Sbjct: 61 EEISSATKNIADSAQQAA--SFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVES 118
Query: 916 -GDSSQQIREVAHVINS 931
+++I IN+
Sbjct: 119 FQKGAEEITSFVETINA 135
>2wnk_A Sporosag, sporozoite-specific SAG protein; membrane protein; 1.55A
{Toxoplasma gondii} PDB: 2x28_A
Length = 238
Score = 30.2 bits (67), Expect = 3.0
Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 7/105 (6%)
Query: 56 VKFEPPCDPAPNSPSPSPRENQYTKVCAIRRQTTSATSSPFKLNATLDESPLAQRRKQDS 115
V+F C P+ TKVC TT+ S+ L L + LAQ
Sbjct: 24 VRFN--CPSTLEEIKPAYEAGDSTKVC-----TTADCSNEAALKDVLKSASLAQAEGSGP 76
Query: 116 AKSRTYPCVNETKIISTNGILKSCASGPQSPQQSMKYDGMQQSEC 160
+ + + + + C S + +C
Sbjct: 77 SGGNDFTLTVDALPEAETSVFFLCQRTGASRSARRLGTAVPSDKC 121
Score = 30.2 bits (67), Expect = 3.2
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 574 VKFEPPCDPAPNSPSPSPRENQYTKVCAIRRQTTSATSSPFKLNATLDESPLAQRRKQDS 633
V+F C P+ TKVC TT+ S+ L L + LAQ
Sbjct: 24 VRFN--CPSTLEEIKPAYEAGDSTKVC-----TTADCSNEAALKDVLKSASLAQAEGSGP 76
Query: 634 AKSRTY 639
+ +
Sbjct: 77 SGGNDF 82
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 29.2 bits (64), Expect = 6.1
Identities = 20/192 (10%), Positives = 51/192 (26%), Gaps = 24/192 (12%)
Query: 665 QQSMVQKFTQLTKDNIHKSLEKINSQGTEYANHVLNRRGSLKMQTAATSTKIVRNLNEFL 724
+ F L ++ ++ Q E N +++ T+ ++ I + +
Sbjct: 15 HPKSGKYFHNLHARDLSNIYQQCYKQIDETINQLVD-------STSPSTIGIEEQVADIT 67
Query: 725 NFSKKIALNREIREAEDHLVKKIESMNSQVKLLVESSPEDDDSSEYFPMTCSITQELRLE 784
+ K + + + I+ + K ++ P+ D S+ +
Sbjct: 68 STYKLL---STYESESNSFDEHIKDLKKNFKQSSDACPQIDLST--------------WD 110
Query: 785 LENLNRNVLQDPEPQLADDIESGFESTNSSHAQYHLTGDEIFIWENPLDETKDSALPESC 844
+ + ++ + +IW +P D P
Sbjct: 111 KYRTGELTAPKLSELYLNMPTPEPATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADE 170
Query: 845 SAHSIASNKSSF 856
I K
Sbjct: 171 DDLQIEGGKIEL 182
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 28.8 bits (65), Expect = 9.3
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 161 RKFSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLD 197
R F DP + A+A R+ +R++
Sbjct: 64 RAFRFDPGPLNRAFFQGRFARALRRRQGLGESHRLVH 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.385
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,783,788
Number of extensions: 862780
Number of successful extensions: 1566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1538
Number of HSP's successfully gapped: 46
Length of query: 1018
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 915
Effective length of database: 3,825,930
Effective search space: 3500725950
Effective search space used: 3500725950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.3 bits)