RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16313
         (1018 letters)



>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 194

 Score = 96.5 bits (239), Expect = 2e-23
 Identities = 44/197 (22%), Positives = 71/197 (36%), Gaps = 40/197 (20%)

Query: 325 EFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKS 384
           +F   L     II  ++LR + +  GI    R VVWK ++   P  ++ K +  + +RK 
Sbjct: 9   KFDNILKD-KTIINQQDLRQISW-NGIPKIHRPVVWKLLIGYLP--VNTKRQEGFLQRKR 64

Query: 385 EEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNIL 444
           +EY                          +  D+ RT+ H   Y          SL  IL
Sbjct: 65  KEYRDSLKHTFSDQHSRD-----IPTWHQIEIDIPRTNPHIPLY---QFKSVQNSLQRIL 116

Query: 445 TTYALNHPAVSYCQGMSDLASPLLVTMSN----------------------------EAH 476
             +A+ HPA  Y QG++DL +P   T                               EA 
Sbjct: 117 YLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEAD 176

Query: 477 AYICFCALMRRLGRNFL 493
            + C   L+ ++  N++
Sbjct: 177 TFWCLTKLLEQITDNYI 193


>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 53.3 bits (127), Expect = 2e-08
 Identities = 12/99 (12%), Positives = 33/99 (33%)

Query: 499 MTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWS 558
           + ++ ++L+  ++      Y + ++   + + + +RW+   + REF     + M +   S
Sbjct: 5   ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS 64

Query: 559 SLPPNPPQGELPLYDVKFEPPCDPAPNSPSPSPRENQYT 597
                         +    P     P   S       + 
Sbjct: 65  ETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQ 103



 Score = 37.9 bits (87), Expect = 0.002
 Identities = 11/77 (14%), Positives = 22/77 (28%)

Query: 3   LEKEKADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEPPC 62
            + E  + + + +RW+   + REF     + M +   S              +    P  
Sbjct: 27  FQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVT 86

Query: 63  DPAPNSPSPSPRENQYT 79
              P   S       + 
Sbjct: 87  PTEPRVASFVTPTKDFQ 103


>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus
           amyloliquefaciens [TaxId: 1390]}
          Length = 89

 Score = 28.2 bits (63), Expect = 1.1
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 161 RKFSVD-PQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETF 204
           +K  ++  QI S   L+  L K   + + +      L DC     
Sbjct: 1   KKAVINGEQIRSISDLHQTLKKELALPEYYGENLDALWDCLTGWV 45


>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
          Length = 85

 Score = 27.8 bits (62), Expect = 1.5
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 721 NEFLNFSKKIALNREIREAEDHLVKKIESMN---SQVKLLVESSPEDDDSSE 769
            EF    + I       + +D  ++   S+    S   L+      +D S E
Sbjct: 13  TEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPEGNNDGSPE 64


>d2cx6a1 c.9.1.1 (A:1-90) Hypothetical protein YhcO {Escherichia
           coli [TaxId: 562]}
          Length = 90

 Score = 27.8 bits (62), Expect = 1.6
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 161 RKFSVD-PQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPL 207
             ++ D  +I S E  Y   ++ F + K+       L D      LPL
Sbjct: 2   NIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMNDVLPL 49


>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B,
            ScpB {Chlorobium tepidum [TaxId: 1097]}
          Length = 85

 Score = 26.6 bits (59), Expect = 3.6
 Identities = 4/39 (10%), Positives = 15/39 (38%)

Query: 971  MDYNEMAIYFDKMVRKHNVHKVLNEARKRYESYLSAFHL 1009
            ++   ++           + + ++E  + YE+    F +
Sbjct: 23   VNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRI 61


>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 226

 Score = 27.2 bits (59), Expect = 9.2
 Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 27/210 (12%)

Query: 350 GIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLA- 408
           G+  S   V    +L V+   +      +          ++ D     +  G+     A 
Sbjct: 15  GLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGAS 74

Query: 409 YVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLL 468
            +TG+ + ++    R       A      +                             L
Sbjct: 75  EITGLSKAELEVQGRQRFDDNLAILLRAFLQRQP---------------------QPCCL 113

Query: 469 VTMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADD 528
           V  + + + +      + RL     +DG         L    +   P      KS+    
Sbjct: 114 VAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 173

Query: 529 LLYCYRWLLLEMKREF--AFNDALIMLEVM 556
           +   Y  L  +   +   A  D L +L + 
Sbjct: 174 I---YTRLYWQAPTDSHTAEGDVLTLLSIC 200


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0436    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,607,176
Number of extensions: 167917
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 15
Length of query: 1018
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 924
Effective length of database: 1,116,976
Effective search space: 1032085824
Effective search space used: 1032085824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)