BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16314
(854 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/320 (39%), Positives = 175/320 (54%), Gaps = 35/320 (10%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F D+F K H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA +
Sbjct: 10 AFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGL-----DKRNYSRATTS 64
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
Q+C+RAGGKHNDL++VG HHTFFE+L S D F + +
Sbjct: 65 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNF-----SFGDYFKLDAILFAWLLLTSEKW 119
Query: 274 DRIGGGRNAADLVNQDDPAYK-----ADLLPSKLTRLENQRSM---KDNFWEMGETGPCG 325
+ R + DD AY+ + ++ R+ + + DNFW+MG+TGPCG
Sbjct: 120 FALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCG 179
Query: 326 PCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCG 382
PC+E+ YD I GG + +D +EIWN+VF+Q+NR+ DG+++PLPK +D G
Sbjct: 180 PCTEIFYDHGDHIWGGPPGSP--EEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTG 237
Query: 383 MGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADH 442
MG ER+ +V+Q SNYD D+F L +A+ K TGA + + RV+ADH
Sbjct: 238 MGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK-----------SLRVIADH 286
Query: 443 ARTLTIALADGGRPDNTGRG 462
R+ +ADG P N RG
Sbjct: 287 IRSCAFLIADGVMPSNENRG 306
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 71/105 (67%), Gaps = 6/105 (5%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF K H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA +Q
Sbjct: 12 LDFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGL-----DKRNYSRATTSQ 65
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
+C+RAGGKHNDL++VG HHTFFEMLGN+SFGDYFK I
Sbjct: 66 RCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFA 110
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 96/216 (44%), Gaps = 50/216 (23%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
++PLPK +D GMG ER+ +++Q SNYD D+F
Sbjct: 226 MEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLF-------------------------- 259
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
RTL A+A + G D + + RV+ADH R+ +ADG P N
Sbjct: 260 ----RTLIQAVA---------KVTGATDLS--NKSLRVIADHIRSCAFLIADGVMPSNEN 304
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLLS----QGKGATIEDTIGLDI 638
RGYVLRRI+RRAVR+G LGAK F LV ++D++ + + + A +E + +
Sbjct: 305 RGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEE 363
Query: 639 HSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEF 674
RG+ D+ DT DG F
Sbjct: 364 EQFARTLERGLALLDEE----LAKLSGDTLDGETAF 395
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G LGAK F LV ++D++G +L + + ++ EEEQ
Sbjct: 307 YVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQ 365
Query: 830 FLKTLSRGRSLLNRNESHLA 849
F +TL RG +LL+ + L+
Sbjct: 366 FARTLERGLALLDEELAKLS 385
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 215 bits (547), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 174/320 (54%), Gaps = 35/320 (10%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F D+F K H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA +
Sbjct: 10 AFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGL-----DKRNYSRATTS 64
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
Q+C+RAGGKHNDL++VG HHTFFE+L S D F + +
Sbjct: 65 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNF-----SFGDYFKLDAILFAWLLLTSEKW 119
Query: 274 DRIGGGRNAADLVNQDDPAYK-----ADLLPSKLTRLENQRSM---KDNFWEMGETGPCG 325
+ R + DD AY+ + ++ R+ + + DNFW+MG+TGPCG
Sbjct: 120 FALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCG 179
Query: 326 PCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCG 382
PC+E+ YD I GG + +D +EIWN+VF+Q+NR+ DG+++PLPK +D
Sbjct: 180 PCTEIFYDHGDHIWGGPPGSP--EEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTA 237
Query: 383 MGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADH 442
MG ER+ +V+Q SNYD D+F L +A+ K TGA + + RV+ADH
Sbjct: 238 MGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK-----------SLRVIADH 286
Query: 443 ARTLTIALADGGRPDNTGRG 462
R+ +ADG P N RG
Sbjct: 287 IRSCAFLIADGVMPSNENRG 306
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 71/105 (67%), Gaps = 6/105 (5%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF K H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA +Q
Sbjct: 12 LDFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGL-----DKRNYSRATTSQ 65
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
+C+RAGGKHNDL++VG HHTFFEMLGN+SFGDYFK I
Sbjct: 66 RCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFA 110
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 95/217 (43%), Gaps = 52/217 (23%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
++PLPK +D MG ER+ +++Q SNYD D+F
Sbjct: 226 MEPLPKPSVDTAMGLERIAAVLQHVNSNYDIDLF-------------------------- 259
Query: 523 ADHARTLTIALAD-GGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNT 581
RTL A+A G D + + + RV+ADH R+ +ADG P N
Sbjct: 260 ----RTLIQAVAKVTGATDLSNKSL------------RVIADHIRSCAFLIADGVMPSNE 303
Query: 582 GRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLLS----QGKGATIEDTIGLD 637
RGYVLRRI+RRAVR+G LGAK F LV ++D++ + + + A +E + +
Sbjct: 304 NRGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTE 362
Query: 638 IHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEF 674
RG+ D+ DT DG F
Sbjct: 363 EEQFARTLERGLALLDEE----LAKLSGDTLDGETAF 395
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G LGAK F LV ++D++G +L + + ++ EEEQ
Sbjct: 307 YVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQ 365
Query: 830 FLKTLSRGRSLLNRNESHLA 849
F +TL RG +LL+ + L+
Sbjct: 366 FARTLERGLALLDEELAKLS 385
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 170/316 (53%), Gaps = 43/316 (13%)
Query: 156 FGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +F KK H V S+ ++P +DPTLLF NAGM +K +FLG + RA + Q
Sbjct: 12 FLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGL-----EKRPYKRATSCQ 66
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSEL 271
KC+R GKHNDL+ VG HHTFFE+L K+ WE P +L
Sbjct: 67 KCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKL 126
Query: 272 HYDRIGGGRNAADLVNQDDPAYKA-----DLLPSKLTRLENQRSMKDNFWEMGETGPCGP 326
+ + D+ AY+ + ++ RL + DNFW+MG+ GPCGP
Sbjct: 127 Y----------VSVYKDDEEAYRIWNEHIGIPSERIWRLGEE----DNFWQMGDVGPCGP 172
Query: 327 CSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFE 386
SE++ DR G + D LEIWNLVF+QYNR+ +G L PLP +ID GMG E
Sbjct: 173 SSEIYVDR---GEEY-----EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 224
Query: 387 RLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTL 446
R+ SV+Q K SN++ D+ PL + ++ +G + GE K D+A RV+ADH R +
Sbjct: 225 RIASVLQGKNSNFEIDIIFPLIQFGEEVSGK-----KYGE--KFETDVALRVIADHLRAI 277
Query: 447 TIALADGGRPDNTGRG 462
T A++DG P N GRG
Sbjct: 278 TFAISDGVIPSNEGRG 293
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 66/99 (66%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F +KK H V S+ ++P +DPTLLF NAGM +K +FLG + RA + QKC+
Sbjct: 15 FFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGL-----EKRPYKRATSCQKCL 69
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
R GKHNDL+ VG HHTFFEMLGN+SFGDYFK + I
Sbjct: 70 RVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAI 108
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 53/182 (29%)
Query: 99 YKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 158
+K +FLG + RA + QKC+R GKHNDL+ VG HHTFFEMLGN+SFGD
Sbjct: 47 FKNVFLGL-----EKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGD 101
Query: 159 YFKKQH-----DYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
YFKK+ ++V +P + L+ + YK +
Sbjct: 102 YFKKEAIEYAWEFVTEVLKLPKEK---LYVSV----YK--------------------DD 134
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
++ R +H +G +P I +DNFW+MG+ GPCGP SE++
Sbjct: 135 EEAYRIWNEH-----IG-----------IPSERIWRLGEEDNFWQMGDVGPCGPSSEIYV 178
Query: 274 DR 275
DR
Sbjct: 179 DR 180
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 52/165 (31%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEE-------DKEGI 515
L PLP +ID GMG ER+ S++Q K SN++ D+ P Q GEE +K
Sbjct: 209 LTPLPHPNIDTGMGLERIASVLQGKNSNFEIDII---FPLIQ--FGEEVSGKKYGEKFET 263
Query: 516 DMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADG 575
D+A RV+ADH R +T A++DG P N G
Sbjct: 264 DVALRVIADHLRAITFAISDGVIPSNEG-------------------------------- 291
Query: 576 GRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYV+RRILRRA+R+G KLG + V+ VVD++
Sbjct: 292 -------RGYVIRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIM 328
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YV+RRILRRA+R+G KLG + V+ VVD++ + +PEL + + I+ EE++
Sbjct: 294 YVIRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKR 352
Query: 830 FLKTLSRGRSLLN 842
F+KTL G +
Sbjct: 353 FIKTLKAGMEYIQ 365
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPA 762
E +AWE +T V K+P ++LYV+ + E A
Sbjct: 106 EAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEA 137
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 170/316 (53%), Gaps = 43/316 (13%)
Query: 156 FGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +F KK H V S+ ++P +DPTLLF NAGM +K +FLG + RA + Q
Sbjct: 11 FLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGL-----EKRPYKRATSCQ 65
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSEL 271
KC+R GKHNDL+ VG HHTFFE+L K+ WE P +L
Sbjct: 66 KCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKL 125
Query: 272 HYDRIGGGRNAADLVNQDDPAYKA-----DLLPSKLTRLENQRSMKDNFWEMGETGPCGP 326
+ + D+ AY+ + ++ RL + DNFW+MG+ GPCGP
Sbjct: 126 Y----------VSVYKDDEEAYRIWNEHIGIPSERIWRLGEE----DNFWQMGDVGPCGP 171
Query: 327 CSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFE 386
SE++ DR G + D LEIWNLVF+QYNR+ +G L PLP +ID GMG E
Sbjct: 172 SSEIYVDR---GEEY-----EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 223
Query: 387 RLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTL 446
R+ SV+Q K SN++ D+ PL + ++ +G + GE K D+A RV+ADH R +
Sbjct: 224 RIASVLQGKNSNFEIDIIFPLIQFGEEVSGK-----KYGE--KFETDVALRVIADHLRAI 276
Query: 447 TIALADGGRPDNTGRG 462
T A++DG P N GRG
Sbjct: 277 TFAISDGVIPSNEGRG 292
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 66/99 (66%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F +KK H V S+ ++P +DPTLLF NAGM +K +FLG + RA + QKC+
Sbjct: 14 FFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGL-----EKRPYKRATSCQKCL 68
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
R GKHNDL+ VG HHTFFEMLGN+SFGDYFK + I
Sbjct: 69 RVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAI 107
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 53/182 (29%)
Query: 99 YKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 158
+K +FLG + RA + QKC+R GKHNDL+ VG HHTFFEMLGN+SFGD
Sbjct: 46 FKNVFLGL-----EKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGD 100
Query: 159 YFKKQ-----HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
YFKK+ ++V +P + L+ + YK +
Sbjct: 101 YFKKEAIEYAWEFVTEVLKLPKEK---LYVSV----YK--------------------DD 133
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
++ R +H +G +P I +DNFW+MG+ GPCGP SE++
Sbjct: 134 EEAYRIWNEH-----IG-----------IPSERIWRLGEEDNFWQMGDVGPCGPSSEIYV 177
Query: 274 DR 275
DR
Sbjct: 178 DR 179
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 52/165 (31%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEE-------DKEGI 515
L PLP +ID GMG ER+ S++Q K SN++ D+ P Q GEE +K
Sbjct: 208 LTPLPHPNIDTGMGLERIASVLQGKNSNFEIDII---FPLIQ--FGEEVSGKKYGEKFET 262
Query: 516 DMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADG 575
D+A RV+ADH R +T A++DG P N G
Sbjct: 263 DVALRVIADHLRAITFAISDGVIPSNEG-------------------------------- 290
Query: 576 GRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYV+RRILRRA+R+G KLG + V+ VVD++
Sbjct: 291 -------RGYVIRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIM 327
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YV+RRILRRA+R+G KLG + V+ VVD++ + +PEL + + I+ EE++
Sbjct: 293 YVIRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKR 351
Query: 830 FLKTLSRGRSLLN 842
F+KTL G +
Sbjct: 352 FIKTLKAGMEYIQ 364
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPA 762
E +AWE +T V K+P ++LYV+ + E A
Sbjct: 105 EAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEA 136
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 163/311 (52%), Gaps = 33/311 (10%)
Query: 156 FGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +F KK H V S+ ++P +DPTLLF NAG +K +FLG + RA + Q
Sbjct: 12 FLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGXVPFKNVFLGL-----EKRPYKRATSCQ 66
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSEL 271
KC+R GKHNDL+ VG HHTFFE L K+ WE P +L
Sbjct: 67 KCLRVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKL 126
Query: 272 HYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELH 331
+ A + N+ + ++ RL + DNFW+ G+ GPCGP SE++
Sbjct: 127 YVSVYKDDEEAYRIWNEH-----IGIPSERIWRLGEE----DNFWQXGDVGPCGPSSEIY 177
Query: 332 YDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSV 391
DR G + D LEIWNLVF QYNR+ +G L PLP +ID G G ER+ SV
Sbjct: 178 VDR---GEEY-----EGDERYLEIWNLVFXQYNRDENGVLTPLPHPNIDTGXGLERIASV 229
Query: 392 IQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALA 451
+Q K SN++ D+ PL + ++ +G + GE K D+A RV+ADH R +T A++
Sbjct: 230 LQGKNSNFEIDIIFPLIQFGEEVSGK-----KYGE--KFETDVALRVIADHLRAITFAIS 282
Query: 452 DGGRPDNTGRG 462
DG P N GRG
Sbjct: 283 DGVIPSNEGRG 293
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 64/99 (64%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F +KK H V S+ ++P +DPTLLF NAG +K +FLG + RA + QKC+
Sbjct: 15 FFEKKGHTRVKSAPLVPENDPTLLFVNAGXVPFKNVFLGL-----EKRPYKRATSCQKCL 69
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
R GKHNDL+ VG HHTFFE LGN+SFGDYFK + I
Sbjct: 70 RVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGDYFKKEAI 108
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 84/182 (46%), Gaps = 53/182 (29%)
Query: 99 YKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 158
+K +FLG + RA + QKC+R GKHNDL+ VG HHTFFE LGN+SFGD
Sbjct: 47 FKNVFLGL-----EKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGD 101
Query: 159 YFKKQ-----HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
YFKK+ ++V +P + L+ + YK +
Sbjct: 102 YFKKEAIEYAWEFVTEVLKLPKEK---LYVSV----YK--------------------DD 134
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
++ R +H +G +P I +DNFW+ G+ GPCGP SE++
Sbjct: 135 EEAYRIWNEH-----IG-----------IPSERIWRLGEEDNFWQXGDVGPCGPSSEIYV 178
Query: 274 DR 275
DR
Sbjct: 179 DR 180
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 12/90 (13%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEE-------DKEGI 515
L PLP +ID G G ER+ S++Q K SN++ D+ P Q GEE +K
Sbjct: 209 LTPLPHPNIDTGXGLERIASVLQGKNSNFEIDII---FPLIQ--FGEEVSGKKYGEKFET 263
Query: 516 DMAYRVLADHARTLTIALADGGRPDNTGRG 545
D+A RV+ADH R +T A++DG P N GRG
Sbjct: 264 DVALRVIADHLRAITFAISDGVIPSNEGRG 293
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 786 KLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLN 842
KLG + V+ VVD+ + +PEL + + I+ EE++F+KTL G +
Sbjct: 309 KLGIENPFLYKGVDLVVDIXKEPYPELELSREFVKGIVKGEEKRFIKTLKAGXEYIQ 365
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPA 762
E +AWE +T V K+P ++LYV+ + E A
Sbjct: 106 EAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEA 137
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 125/339 (36%), Gaps = 67/339 (19%)
Query: 460 GRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVG-EEDKEGIDMA 518
G P+ K +D G G ERLV + Q + YD V G P + G E+ E I M
Sbjct: 236 GEKYIPMETKVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKKMAGIEKIDEKILME 294
Query: 519 YRVLADHARTLTIALADGGRPDNTGR-GVGEEDKEGIDMAYRVL---ADHARTLTIALAD 574
LA + R R G+ E+ E Y ++ ADH + LT LAD
Sbjct: 295 NSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLAD 354
Query: 575 GGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRL-----------------FSSLVNTVV 617
G P N GY+ R ++R+++R+ E LG + L F + + ++
Sbjct: 355 GVVPSNVKAGYLARLLIRKSIRHLRE-LGLEVPLSEIVALHIKELHKTFPEFKEMEDIIL 413
Query: 618 DLLLLSQGKGA-TIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEP 676
+++ L + K A T+ L I L+ +G+ + + T + E
Sbjct: 414 EMIELEEKKYAETLRRGSDLVRREIAKLKKKGIKEIPVEKLVTFYESHGLTPEIVKEIAE 473
Query: 677 CEGTVVGLRYN------------------------------------------KQFVDSV 694
EG V + N K+F V
Sbjct: 474 KEGVKVNIPDNFYSMVAKEAERTKEEKGEELVDFELLKDLPDTRRLYYEDPFMKEFDAKV 533
Query: 695 SSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVC 733
+ ++LD + FY E GGQ YD G +I E++V
Sbjct: 534 LRVIKDWVILDATAFYPEGGGQPYDTGVLIVNGREVKVT 572
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 124/360 (34%), Gaps = 112/360 (31%)
Query: 155 SFGDYFKKQHDYVHSSC----VIPSDDPTLLFANAGMNQYKP-IFLGTVDPNSDMAKLVR 209
F +F+K Y H V+P +L A + ++P + G DP ++
Sbjct: 65 KFLRFFEKHEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPAN-----P 119
Query: 210 AVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCS 269
V +Q IR D+D+VG H T FE++ H K +W M ET
Sbjct: 120 LVISQPSIR----FTDIDNVGITGRHFTIFEMMA-HHAFNYPGKPIYW-MDET------V 167
Query: 270 ELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSE 329
EL ++ +L + K+N W G G GP E
Sbjct: 168 ELAFE----------------------FFTKELKMKPEDITFKENPWAGG--GNAGPAFE 203
Query: 330 LHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLK------------PLPKK 377
+ Y LE+ LVF+QY + + + + P+ K
Sbjct: 204 VLYRG------------------LEVATLVFMQYKKAPENAPQDQVVVIKGEKYIPMETK 245
Query: 378 HIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDK-------- 429
+D G G ERLV + Q + YD V + E ++K G ++ E+
Sbjct: 246 VVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKKMAGIEKIDEKILMENSRLAGMFDI 304
Query: 430 ---------------------EGIDMAYR------VLADHARTLTIALADGGRPDNTGRG 462
E ++ A R +ADH + LT LADG P N G
Sbjct: 305 EDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVKAG 364
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
Y+ R ++R+++R+ E LG + L S +V + L TFPE + I+++I+ EE++
Sbjct: 365 YLARLLIRKSIRHLRE-LGLEVPL-SEIVALHIKELHKTFPEFKEMEDIILEMIELEEKK 422
Query: 830 FLKTLSRGRSLLNRNESHLAQCPIQ 854
+ +TL RG L+ R + L + I+
Sbjct: 423 YAETLRRGSDLVRREIAKLKKKGIK 447
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 1 MDFFMKKK--QHDYVHSSCVIPSDDPTLLFANAGMNQYKP-IFLGTVDPNSDMAKLVRAV 57
+ FF K + H V V+P +L A + ++P + G DP ++ V
Sbjct: 67 LRFFEKHEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPAN-----PLV 121
Query: 58 NTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIF 103
+Q IR D+D+VG H T FEM+ + +F + KPI+
Sbjct: 122 ISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFN--YPGKPIY 161
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
Length = 752
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 6/146 (4%)
Query: 460 GRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVG-EEDKEGIDMA 518
G P+ +D G G ERLV + Q + YD V G P G E+ E I M
Sbjct: 236 GEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILME 294
Query: 519 YRVLADHARTLTIALADGGRPDNTGR-GVGEEDKEGIDMAYRVL---ADHARTLTIALAD 574
LA + R R G+ E+ E Y ++ ADH + LT LAD
Sbjct: 295 NSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLAD 354
Query: 575 GGRPDNTGRGYVLRRILRRAVRYGTE 600
G P N GY+ R ++R+++R+ E
Sbjct: 355 GVVPSNVXAGYLARLLIRKSIRHLRE 380
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
Y+ R ++R+++R+ E LG + L S +V + L TFPE + I+++I+ EE+
Sbjct: 365 YLARLLIRKSIRHLRE-LGLEVPL-SEIVALHIXELHKTFPEFXEMEDIILEMIELEEKX 422
Query: 830 FLKTLSRGRSLLNRNESHLAQCPIQ 854
+ +TL RG L+ R + L + I+
Sbjct: 423 YAETLRRGSDLVRREIAKLKKKGIK 447
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 702 ILLDKSNFYAEQGGQIYDEGFMIGVNDELEVC 733
++LD + FY E GGQ YD G +I E+ V
Sbjct: 541 VILDATAFYPEGGGQPYDTGVLIVNGREVXVT 572
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 131/618 (21%), Positives = 206/618 (33%), Gaps = 152/618 (24%)
Query: 143 YHHTFFEMLGNWSFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNS 202
Y+ FFE G H + V+ + A + ++P V P
Sbjct: 68 YYLNFFERRG-----------HGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPP 116
Query: 203 DMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGET 262
+ +Q CIR +DLD VG+ H T FE H K+ +W+ ET
Sbjct: 117 ANPLTI----SQPCIRL----DDLDSVGRTGRHLTLFEXXAH-HAFNYPGKEIYWK-NET 166
Query: 263 GPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETG 322
C+EL + G D+V +++P W G G
Sbjct: 167 --VAYCTELLNEL---GVKKEDIVYKEEP------------------------WAGG--G 195
Query: 323 PCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKH---- 378
GPC E I GG LE+ LVF +G ++ ++
Sbjct: 196 NAGPCLEA----IVGG--------------LEVATLVFXNLEEHPEGDIEIKGARYRKXD 237
Query: 379 ---IDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMA 435
+D G G ER V + + YD +F + + I + ED +
Sbjct: 238 NYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVS-----FNRED----ERV 287
Query: 436 YRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHID-CGMGFERLVSIIQDKRSNYDTD 494
R++A+ ++ I + G L L K D G+ E L I+ Y
Sbjct: 288 RRIVAESSKLAGIX------GELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYS-- 339
Query: 495 VFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRG--------- 545
LADH R + L DG P N G G
Sbjct: 340 ---------------------------LADHTRCILFXLGDGLVPSNAGAGYLARLXIRR 372
Query: 546 ---VGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILR-RAVRYGTEK 601
+ EE + G+D+ Y ++ H + L P +T ++ IL RY T
Sbjct: 373 SLRLAEELELGLDL-YDLVEXHKKILGFEF---DVPLST-----VQEILELEKERYRT-T 422
Query: 602 LGAKPRLFSSLVNTVV-----DLLLLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSP 656
+ RL LV DL+ L G +E +G+ +++ + +
Sbjct: 423 VSKGTRLVERLVERKKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEXPKDIYAELAK 482
Query: 657 KY-RYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGG 715
++ + Q E+ E +F V ++L++S FY E GG
Sbjct: 483 RHSKAEKVQEKKITLQNEYPATEKLYYDDPTLLEFEAEVIGVEGDFVILNRSAFYPESGG 542
Query: 716 QIYDEGFMIGVNDELEVC 733
Q D G++I + EV
Sbjct: 543 QDNDVGYLIANGGKFEVV 560
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 749 DRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKL-GAKPRLFSSL 797
D L GG PA EP +DYV+ +I R+ EK GA RL + +
Sbjct: 333 DELMNDITGGRTPASFEPSIDYVVTKI----PRFNFEKFAGANDRLTTQM 378
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 749 DRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKL-GAKPRLFSSL 797
D L GG PA EP +DYV+ +I R+ EK GA RL + +
Sbjct: 333 DELMNDITGGRTPASFEPSIDYVVTKI----PRFNFEKFAGANDRLTTQM 378
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 749 DRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKL-GAKPRLFSSL 797
D L GG PA EP +DYV+ +I R+ EK GA RL + +
Sbjct: 333 DELMNDITGGRTPASFEPSIDYVVTKI----PRFNFEKFAGANDRLTTQM 378
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,594,215
Number of Sequences: 62578
Number of extensions: 1423797
Number of successful extensions: 3019
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2917
Number of HSP's gapped (non-prelim): 72
length of query: 854
length of database: 14,973,337
effective HSP length: 107
effective length of query: 747
effective length of database: 8,277,491
effective search space: 6183285777
effective search space used: 6183285777
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)