BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16314
(854 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VLM8|SYAC_DROME Alanine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster
GN=Aats-ala PE=2 SV=1
Length = 966
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/326 (67%), Positives = 244/326 (74%), Gaps = 35/326 (10%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
++ D+FK+Q H YVHSS IP DDPTLLFANAGMNQ+KPIFLGT DPNS+M+K VR NT
Sbjct: 12 AYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRVANT 71
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF--------WEMGETGPC 265
QKCIRAGGKHNDLDDVGKDVYHHTFFE+L S D F WE
Sbjct: 72 QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGN-----WSFGDYFKKEICSWAWEFLTQRLA 126
Query: 266 GPCSELHYDRIGGGRNAADLVNQD--------DPAYKAD-LLPSKLTRLENQRSMKDNFW 316
P L+ GG +AA + D D K + +LP SMKDNFW
Sbjct: 127 LPKDRLYVTYFGG--DAASGLEPDLECKQMWLDLGLKPEHILPG---------SMKDNFW 175
Query: 317 EMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPK 376
EMGETGPCGPCSELH+DRI GGR+ +LVN DDPDVLEIWNLVFIQYNRE+DGSLK LPK
Sbjct: 176 EMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPK 234
Query: 377 KHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAY 436
KHIDCGMGFERLVSVIQ+KRSNYDTD+FVPLF+AIQ GTGAPPYQGRVG +D +GIDMAY
Sbjct: 235 KHIDCGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAY 294
Query: 437 RVLADHARTLTIALADGGRPDNTGRG 462
RVLADHART+TIALADGG PDNTGRG
Sbjct: 295 RVLADHARTITIALADGGTPDNTGRG 320
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 122/200 (61%), Gaps = 44/200 (22%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++KPIFLGT DPNS+M+K VR NTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG
Sbjct: 47 QFKPIFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 106
Query: 158 DYFKKQ-----HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
DYFKK+ +++ +P D Y F G
Sbjct: 107 DYFKKEICSWAWEFLTQRLALPKD-----------RLYVTYFGGDA-------------- 141
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEI-LPESHIIPGSMKDNFWEMGETGPCGPCSEL 271
A G DL+ + ++ L HI+PGSMKDNFWEMGETGPCGPCSEL
Sbjct: 142 ------ASGLEPDLE------CKQMWLDLGLKPEHILPGSMKDNFWEMGETGPCGPCSEL 189
Query: 272 HYDRIGGGRNAADLVNQDDP 291
H+DRI GGR+ +LVN DDP
Sbjct: 190 HFDRI-GGRSVPELVNMDDP 208
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/168 (61%), Positives = 111/168 (66%), Gaps = 48/168 (28%)
Query: 462 GLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVF---------GTGAPPYQGRVGEEDK 512
LK LPKKHIDCGMGFERLVS+IQ+KRSNYDTD+F GTGAPPYQGRVG +D
Sbjct: 228 SLKQLPKKHIDCGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDV 287
Query: 513 EGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIAL 572
+GIDMAYRVLADHART+TIALADGG PDNTG
Sbjct: 288 DGIDMAYRVLADHARTITIALADGGTPDNTG----------------------------- 318
Query: 573 ADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRILRRAVRY TEKL AKP F++LVNTVVDLL
Sbjct: 319 ----------RGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLL 356
Score = 182 bits (463), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 82/98 (83%), Positives = 89/98 (90%), Gaps = 1/98 (1%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF K+++H YVHSS IP DDPTLLFANAGMNQ+KPIFLGT DPNS+M+K VR NTQ
Sbjct: 14 LDFF-KEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRVANTQ 72
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK
Sbjct: 73 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 110
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 621 LLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGT 680
+LSQGKGA+ + I LD+H+I+ LQ +GVPPT+D+ KY+Y D D AY + C
Sbjct: 449 VLSQGKGASKIEEINLDVHAISQLQEQGVPPTNDTFKYKYEAVS-DERDSAYNYGVCNSK 507
Query: 681 VVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDE 729
+V LR+ QFV+ ++SG +AGI+LDK+NFYAE GGQIYD+G ++ VNDE
Sbjct: 508 IVALRFENQFVNEITSGQKAGIVLDKTNFYAESGGQIYDQGALVKVNDE 556
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 67/79 (84%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRILRRAVRY TEKL AKP F++LVNTVVDLLGD FPE+ KDPQ I+DII+EEE Q
Sbjct: 321 YVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVKKDPQHIIDIINEEELQ 380
Query: 830 FLKTLSRGRSLLNRNESHL 848
FLKTL+RGR+LLNR L
Sbjct: 381 FLKTLTRGRNLLNRTIEKL 399
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 30/39 (76%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLD 769
E+C+WAWE LT +P DRLYVTYFGG +GLEPDL+
Sbjct: 112 EICSWAWEFLTQRLALPKDRLYVTYFGGDAASGLEPDLE 150
>sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1
SV=3
Length = 968
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/327 (66%), Positives = 240/327 (73%), Gaps = 39/327 (11%)
Query: 156 FGDYFKK-QHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +YFK+ +H YVHSS IP DDPTLLFANAGMNQ+KPIFL TVDP+ MAKL RA NTQ
Sbjct: 14 FINYFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTVDPSHPMAKLSRAANTQ 73
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYD 274
KCIRAGGKHNDLDDVGKDVYHHTFFE+L S D F E+ C EL
Sbjct: 74 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGS-----WSFGDYFKELA----CKMALELLTQ 124
Query: 275 RIG-----------GGRNAADL--------VNQDDPAYKADLLPSKLTRLENQRSMKDNF 315
G GG AA L + Q+ +A +LP +MKDNF
Sbjct: 125 EFGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNLGLDEAKILPG---------NMKDNF 175
Query: 316 WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLP 375
WEMG+TGPCGPCSE+HYDRIGG R+AA LVNQDDP+VLEIWNLVFIQYNRE+DG LKPLP
Sbjct: 176 WEMGDTGPCGPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLP 234
Query: 376 KKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMA 435
KK ID GMG ERLVSV+Q+K SNYDTD+FVP FEAIQKGTGA PY G+VG ED +GIDMA
Sbjct: 235 KKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDTDGIDMA 294
Query: 436 YRVLADHARTLTIALADGGRPDNTGRG 462
YRVLADHART+T+ALADGGRPDNTGRG
Sbjct: 295 YRVLADHARTITVALADGGRPDNTGRG 321
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/194 (54%), Positives = 124/194 (63%), Gaps = 32/194 (16%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++KPIFL TVDP+ MAKL RA NTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLG+WSFG
Sbjct: 48 QFKPIFLNTVDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFG 107
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ +C + + T F Y F G
Sbjct: 108 DYFKEL------ACKMALELLTQEFGIPVERLYVTYFGGD-------------------- 141
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIG 277
A G DL+ + ++ + L E+ I+PG+MKDNFWEMG+TGPCGPCSE+HYDRI
Sbjct: 142 EAAGLEPDLE--CRQIWQNLG---LDEAKILPGNMKDNFWEMGDTGPCGPCSEIHYDRI- 195
Query: 278 GGRNAADLVNQDDP 291
GGR+AA LVNQDDP
Sbjct: 196 GGRDAAHLVNQDDP 209
Score = 176 bits (445), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/95 (82%), Positives = 84/95 (88%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
+ K+ +H YVHSS IP DDPTLLFANAGMNQ+KPIFL TVDP+ MAKL RA NTQKCI
Sbjct: 17 YFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTVDPSHPMAKLSRAANTQKCI 76
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
RAGGKHNDLDDVGKDVYHHTFFEMLG+WSFGDYFK
Sbjct: 77 RAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFK 111
Score = 160 bits (405), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 101/167 (60%), Gaps = 48/167 (28%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVF---------GTGAPPYQGRVGEEDKE 513
LKPLPKK ID GMG ERLVS++Q+K SNYDTD+F GTGA PY G+VG ED +
Sbjct: 230 LKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDTD 289
Query: 514 GIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALA 573
GIDMAYRVLADHART+T+ALADGGRPDNTG
Sbjct: 290 GIDMAYRVLADHARTITVALADGGRPDNTG------------------------------ 319
Query: 574 DGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRILRRAVRY EKL A F++LV+ VV L
Sbjct: 320 ---------RGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSL 357
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 4/111 (3%)
Query: 621 LLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGT 680
L SQGKGA ED I LDI++I +L+ +G+ TDDSPKY Y + G+Y FE T
Sbjct: 450 LKSQGKGAGGEDLIMLDIYAIEELRAKGLEATDDSPKYNYH----SDSSGSYVFECTVAT 505
Query: 681 VVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELE 731
V+ LR K FVD V +G E G++LDK+ FYAEQGGQI+DEG+++ V+D E
Sbjct: 506 VLALRREKMFVDEVVTGQECGVVLDKTCFYAEQGGQIFDEGYLVKVDDSSE 556
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 59/82 (71%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRILRRAVRY EKL A F++LV+ VV LGD FPEL KDP + DII+EEE Q
Sbjct: 322 YVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQ 381
Query: 830 FLKTLSRGRSLLNRNESHLAQC 851
FLKTLSRGR +L+R L C
Sbjct: 382 FLKTLSRGRRILDRKIQSLGDC 403
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 28/37 (75%)
Query: 733 CTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLD 769
C A ELLT + IP +RLYVTYFGG E AGLEPDL+
Sbjct: 115 CKMALELLTQEFGIPVERLYVTYFGGDEAAGLEPDLE 151
>sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2
Length = 968
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/326 (65%), Positives = 242/326 (74%), Gaps = 37/326 (11%)
Query: 156 FGDYFKK-QHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F D+FK+ +H YVHSS IP DDPTLLFANAGMNQ+KPIFL T+DP+ MAKL RA NTQ
Sbjct: 14 FIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQ 73
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYD 274
KCIRAGGKHNDLDDVGKDVYHHTFFE+L S D F E+ C EL
Sbjct: 74 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGS-----WSFGDYFKELA----CKMALELLTQ 124
Query: 275 RIG-----------GGRNAADLVNQDDPAYKADLLPSKLTR---LENQR----SMKDNFW 316
G GG AA L +ADL ++ + L++ + +MKDNFW
Sbjct: 125 EFGIPIERLYVTYFGGDEAAGL--------EADLECKQIWQNLGLDDTKILPGNMKDNFW 176
Query: 317 EMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPK 376
EMG+TGPCGPCSE+HYDRIGG R+AA LVNQDDP+VLEIWNLVFIQYNRE DG LKPLPK
Sbjct: 177 EMGDTGPCGPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPK 235
Query: 377 KHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAY 436
K ID GMG ERLVSV+Q+K SNYDTD+FVP FEAIQKGTGA PY G+VG ED +GIDMAY
Sbjct: 236 KSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAY 295
Query: 437 RVLADHARTLTIALADGGRPDNTGRG 462
RVLADHART+T+ALADGGRPDNTGRG
Sbjct: 296 RVLADHARTITVALADGGRPDNTGRG 321
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 124/194 (63%), Gaps = 32/194 (16%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++KPIFL T+DP+ MAKL RA NTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLG+WSFG
Sbjct: 48 QFKPIFLNTIDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFG 107
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ +C + + T F Y F G
Sbjct: 108 DYFKEL------ACKMALELLTQEFGIPIERLYVTYFGGD-------------------- 141
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIG 277
A G DL+ K ++ + L ++ I+PG+MKDNFWEMG+TGPCGPCSE+HYDRI
Sbjct: 142 EAAGLEADLE--CKQIWQNLG---LDDTKILPGNMKDNFWEMGDTGPCGPCSEIHYDRI- 195
Query: 278 GGRNAADLVNQDDP 291
GGR+AA LVNQDDP
Sbjct: 196 GGRDAAHLVNQDDP 209
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/98 (81%), Positives = 87/98 (88%), Gaps = 1/98 (1%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF K+ +H YVHSS IP DDPTLLFANAGMNQ+KPIFL T+DP+ MAKL RA NTQ
Sbjct: 15 IDFF-KRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQ 73
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
KCIRAGGKHNDLDDVGKDVYHHTFFEMLG+WSFGDYFK
Sbjct: 74 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFK 111
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 101/167 (60%), Gaps = 48/167 (28%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVF---------GTGAPPYQGRVGEEDKE 513
LKPLPKK ID GMG ERLVS++Q+K SNYDTD+F GTGA PY G+VG ED +
Sbjct: 230 LKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDAD 289
Query: 514 GIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALA 573
GIDMAYRVLADHART+T+ALADGGRPDNTG
Sbjct: 290 GIDMAYRVLADHARTITVALADGGRPDNTG------------------------------ 319
Query: 574 DGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRILRRAVRY EKL A F++LV+ VV L
Sbjct: 320 ---------RGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSL 357
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 79/111 (71%), Gaps = 4/111 (3%)
Query: 621 LLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGT 680
L SQGKGA ED I LDI++I +L+ RG+ TDDSPKY Y D++ G+Y FE T
Sbjct: 450 LKSQGKGAGGEDLIMLDIYAIEELRARGLEVTDDSPKYNY---HLDSS-GSYVFENTVAT 505
Query: 681 VVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELE 731
V+ LR K FV+ VS+G E G++LDK+ FYAEQGGQIYDEG+++ V+D E
Sbjct: 506 VMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSE 556
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 58/79 (73%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRILRRAVRY EKL A F++LV+ VV LGD FPEL KDP + DII+EEE Q
Sbjct: 322 YVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQ 381
Query: 830 FLKTLSRGRSLLNRNESHL 848
FLKTLSRGR +L+R L
Sbjct: 382 FLKTLSRGRRILDRKIQSL 400
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 27/38 (71%)
Query: 732 VCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLD 769
C A ELLT + IP +RLYVTYFGG E AGLE DL+
Sbjct: 114 ACKMALELLTQEFGIPIERLYVTYFGGDEAAGLEADLE 151
>sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1
Length = 968
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/327 (64%), Positives = 240/327 (73%), Gaps = 39/327 (11%)
Query: 156 FGDYFKK-QHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F ++F++ +H YVHSS IP DDPTLLFANAGMNQ+KPIFL T+DP+ MAKL RA NTQ
Sbjct: 14 FINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQ 73
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYD 274
KCIRAGGKHNDLDDVGKDVYHHTFFE+L S D F E+ C EL
Sbjct: 74 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGS-----WSFGDYFKELA----CKMALELLTQ 124
Query: 275 RIG-----------GGRNAADL--------VNQDDPAYKADLLPSKLTRLENQRSMKDNF 315
G GG AA L + Q+ +A +LP +MKDNF
Sbjct: 125 EFGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNLGLDEARILPG---------NMKDNF 175
Query: 316 WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLP 375
WEMG+TGPCGPCSE+HYDRIGG R+AA LVNQDDP+VLEIWNLVFIQYNRE+DG LKPLP
Sbjct: 176 WEMGDTGPCGPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLP 234
Query: 376 KKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMA 435
KK ID GMG ERLVSV+Q+K SNYDTD+F+P FEAIQKGTGA PY G+VG ED +GIDMA
Sbjct: 235 KKSIDTGMGLERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMA 294
Query: 436 YRVLADHARTLTIALADGGRPDNTGRG 462
YRVLADHART+T+ALADGGRPDNTGRG
Sbjct: 295 YRVLADHARTITVALADGGRPDNTGRG 321
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 124/194 (63%), Gaps = 32/194 (16%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++KPIFL T+DP+ MAKL RA NTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLG+WSFG
Sbjct: 48 QFKPIFLNTIDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFG 107
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ +C + + T F Y F G
Sbjct: 108 DYFKEL------ACKMALELLTQEFGIPVERLYVTYFGGD-------------------- 141
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIG 277
A G DL+ + ++ + L E+ I+PG+MKDNFWEMG+TGPCGPCSE+HYDRI
Sbjct: 142 EAAGLEPDLE--CRQIWQNLG---LDEARILPGNMKDNFWEMGDTGPCGPCSEIHYDRI- 195
Query: 278 GGRNAADLVNQDDP 291
GGR+AA LVNQDDP
Sbjct: 196 GGRDAAHLVNQDDP 209
Score = 176 bits (445), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 84/95 (88%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F ++ +H YVHSS IP DDPTLLFANAGMNQ+KPIFL T+DP+ MAKL RA NTQKCI
Sbjct: 17 FFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQKCI 76
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
RAGGKHNDLDDVGKDVYHHTFFEMLG+WSFGDYFK
Sbjct: 77 RAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFK 111
Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 101/167 (60%), Gaps = 48/167 (28%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVF---------GTGAPPYQGRVGEEDKE 513
LKPLPKK ID GMG ERLVS++Q+K SNYDTD+F GTGA PY G+VG ED +
Sbjct: 230 LKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDAD 289
Query: 514 GIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALA 573
GIDMAYRVLADHART+T+ALADGGRPDNTG
Sbjct: 290 GIDMAYRVLADHARTITVALADGGRPDNTG------------------------------ 319
Query: 574 DGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRILRRAVRY EKL A F++LV+ VV L
Sbjct: 320 ---------RGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSL 357
Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 79/111 (71%), Gaps = 4/111 (3%)
Query: 621 LLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGT 680
L SQGKGA ED I LDI++I +L+ +G+ TDDSPKY Y Q D++ G+Y FE T
Sbjct: 450 LKSQGKGAGDEDLIMLDIYAIEELRAKGLEATDDSPKYNY---QSDSS-GSYVFECTVAT 505
Query: 681 VVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELE 731
V+ LR K FVD V +G E G++LDK+ FYAEQGGQIYDEG+++ V+D E
Sbjct: 506 VLALRREKMFVDEVVTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSE 556
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 60/82 (73%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRILRRAVRY EKL A F++LV+ VV LGD FPEL KDP+ + DII+EEE Q
Sbjct: 322 YVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPEMVKDIINEEEVQ 381
Query: 830 FLKTLSRGRSLLNRNESHLAQC 851
FLKTLSRGR +L+R L C
Sbjct: 382 FLKTLSRGRRILDRKIQSLGDC 403
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 28/38 (73%)
Query: 732 VCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLD 769
C A ELLT + IP +RLYVTYFGG E AGLEPDL+
Sbjct: 114 ACKMALELLTQEFGIPVERLYVTYFGGDEAAGLEPDLE 151
>sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1
Length = 968
Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/323 (65%), Positives = 239/323 (73%), Gaps = 31/323 (9%)
Query: 156 FGDYFKK-QHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F D+FK+ +H Y+HSS IP DDPTLLFANAGMNQ+KPIFL T+DP+ MAK RA NTQ
Sbjct: 14 FIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKPSRAANTQ 73
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYD 274
KCIRAGGKHNDLDDVGKDVYHHTFFE+L S D F E+ C EL
Sbjct: 74 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGS-----WSFGDYFKELA----CKMALELLTQ 124
Query: 275 RIG-----------GGRNAADLVNQDDPAYKADLLPSKLTRLENQR----SMKDNFWEMG 319
G GG AA L +P + + L L++ + +MKDNFWEMG
Sbjct: 125 EFGIPIERLYVTYFGGDEAAGL----EPDLECKQIWQNLG-LDDTKILPGNMKDNFWEMG 179
Query: 320 ETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHI 379
+TGPCGPCSE+HYDRIGG R+AA LVNQDDP+VLEIWNLVFIQYNRE DG LKPLPKK I
Sbjct: 180 DTGPCGPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSI 238
Query: 380 DCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVL 439
D GMG ERLVSV+Q+K SNYDTD+FVP FEAIQKGTGA PY G+VG ED +GIDMAYRVL
Sbjct: 239 DTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVL 298
Query: 440 ADHARTLTIALADGGRPDNTGRG 462
ADHART+T+ALADGGRPDNTGRG
Sbjct: 299 ADHARTITVALADGGRPDNTGRG 321
Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/194 (53%), Positives = 123/194 (63%), Gaps = 32/194 (16%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++KPIFL T+DP+ MAK RA NTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLG+WSFG
Sbjct: 48 QFKPIFLNTIDPSHPMAKPSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFG 107
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ +C + + T F Y F G
Sbjct: 108 DYFKEL------ACKMALELLTQEFGIPIERLYVTYFGGD-------------------- 141
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIG 277
A G DL+ K ++ + L ++ I+PG+MKDNFWEMG+TGPCGPCSE+HYDRI
Sbjct: 142 EAAGLEPDLE--CKQIWQNLG---LDDTKILPGNMKDNFWEMGDTGPCGPCSEIHYDRI- 195
Query: 278 GGRNAADLVNQDDP 291
GGR+AA LVNQDDP
Sbjct: 196 GGRDAAHLVNQDDP 209
Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/98 (79%), Positives = 86/98 (87%), Gaps = 1/98 (1%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF K+ +H Y+HSS IP DDPTLLFANAGMNQ+KPIFL T+DP+ MAK RA NTQ
Sbjct: 15 IDFF-KRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKPSRAANTQ 73
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
KCIRAGGKHNDLDDVGKDVYHHTFFEMLG+WSFGDYFK
Sbjct: 74 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFK 111
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 101/167 (60%), Gaps = 48/167 (28%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVF---------GTGAPPYQGRVGEEDKE 513
LKPLPKK ID GMG ERLVS++Q+K SNYDTD+F GTGA PY G+VG ED +
Sbjct: 230 LKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDAD 289
Query: 514 GIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALA 573
GIDMAYRVLADHART+T+ALADGGRPDNTG
Sbjct: 290 GIDMAYRVLADHARTITVALADGGRPDNTG------------------------------ 319
Query: 574 DGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRILRRAVRY EKL A F++LV+ VV L
Sbjct: 320 ---------RGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSL 357
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 76/111 (68%), Gaps = 4/111 (3%)
Query: 621 LLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGT 680
L SQGKGA ED I LDI++I +L+ R + TDDSPKY Y + G+Y FE T
Sbjct: 450 LKSQGKGAGGEDLIMLDIYAIEELRARDLEVTDDSPKYNYHLD----SSGSYVFENTVAT 505
Query: 681 VVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELE 731
V+ LR K FV+ VS+G E G++LDK+ FYAEQGGQIYDEG+++ V+D E
Sbjct: 506 VMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSE 556
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 58/79 (73%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRILRRAVRY EKL A F++LV+ VV LGD FPEL KDP + DII+EEE Q
Sbjct: 322 YVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQ 381
Query: 830 FLKTLSRGRSLLNRNESHL 848
FLKTLSRGR +L+R L
Sbjct: 382 FLKTLSRGRRILDRKIQSL 400
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 28/38 (73%)
Query: 732 VCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLD 769
C A ELLT + IP +RLYVTYFGG E AGLEPDL+
Sbjct: 114 ACKMALELLTQEFGIPIERLYVTYFGGDEAAGLEPDLE 151
>sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars
PE=2 SV=1
Length = 968
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/327 (64%), Positives = 238/327 (72%), Gaps = 39/327 (11%)
Query: 156 FGDYFKK-QHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F ++F++ +H YVHSS IP DDPTLLFANAGMNQ+KPIFL T+DP+ +AKL RA NTQ
Sbjct: 14 FINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAKLSRAANTQ 73
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYD 274
KCIRAGGKHNDLDDVGKDVYHHTFFE+L S D F E+ C EL
Sbjct: 74 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGS-----WSFGDYFKELA----CKMALELLTQ 124
Query: 275 RIG-----------GGRNAADL--------VNQDDPAYKADLLPSKLTRLENQRSMKDNF 315
GG AA L + Q+ A +LP +MKDNF
Sbjct: 125 EFAIPVERLYVTYFGGDEAAGLEPDLECKQIWQNLGLDDAKILPG---------NMKDNF 175
Query: 316 WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLP 375
WEMG+TGPCGPCSE+HYDRI GGR+AA LVNQDDP+VLEIWNLVFIQYNRETDG LKPLP
Sbjct: 176 WEMGDTGPCGPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGLLKPLP 234
Query: 376 KKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMA 435
KK ID GMG ERLVSV+Q+K SNYDTD+FVP FEAIQKGTGA PY G+VG ED +GIDMA
Sbjct: 235 KKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMA 294
Query: 436 YRVLADHARTLTIALADGGRPDNTGRG 462
YRVLADHART+T+ALADGGRPDNTGRG
Sbjct: 295 YRVLADHARTITVALADGGRPDNTGRG 321
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 125/194 (64%), Gaps = 32/194 (16%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++KPIFL T+DP+ +AKL RA NTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLG+WSFG
Sbjct: 48 QFKPIFLNTIDPSHPLAKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFG 107
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ +C + + T FA Y F G
Sbjct: 108 DYFKEL------ACKMALELLTQEFAIPVERLYVTYFGGD-------------------- 141
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIG 277
A G DL+ K ++ + L ++ I+PG+MKDNFWEMG+TGPCGPCSE+HYDRI
Sbjct: 142 EAAGLEPDLE--CKQIWQNLG---LDDAKILPGNMKDNFWEMGDTGPCGPCSEIHYDRI- 195
Query: 278 GGRNAADLVNQDDP 291
GGR+AA LVNQDDP
Sbjct: 196 GGRDAAHLVNQDDP 209
Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 84/95 (88%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F ++ +H YVHSS IP DDPTLLFANAGMNQ+KPIFL T+DP+ +AKL RA NTQKCI
Sbjct: 17 FFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAKLSRAANTQKCI 76
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
RAGGKHNDLDDVGKDVYHHTFFEMLG+WSFGDYFK
Sbjct: 77 RAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFK 111
Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 101/167 (60%), Gaps = 48/167 (28%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVF---------GTGAPPYQGRVGEEDKE 513
LKPLPKK ID GMG ERLVS++Q+K SNYDTD+F GTGA PY G+VG ED +
Sbjct: 230 LKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDAD 289
Query: 514 GIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALA 573
GIDMAYRVLADHART+T+ALADGGRPDNTG
Sbjct: 290 GIDMAYRVLADHARTITVALADGGRPDNTG------------------------------ 319
Query: 574 DGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRILRRAVRY EKL A F++LV+ VV L
Sbjct: 320 ---------RGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSL 357
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 76/111 (68%), Gaps = 4/111 (3%)
Query: 621 LLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGT 680
L SQGKGA ED I LDI++I +L+ +G+ TDDSPKY Y + GAY FE T
Sbjct: 450 LKSQGKGAGGEDLIMLDIYAIEELRAKGLEATDDSPKYNYH----SDSSGAYVFECTVAT 505
Query: 681 VVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELE 731
V+ LR K FV+ V +G E G++LDK+ FYAEQGGQIYDEG+++ V+D E
Sbjct: 506 VLALRREKMFVEEVVTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSE 556
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 59/82 (71%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRILRRAVRY EKL A F++LV+ VV LGD FPEL KDP + DII+EEE Q
Sbjct: 322 YVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQ 381
Query: 830 FLKTLSRGRSLLNRNESHLAQC 851
FLKTLSRGR +L+R L C
Sbjct: 382 FLKTLSRGRRILDRKIQSLGDC 403
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 28/37 (75%)
Query: 733 CTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLD 769
C A ELLT + IP +RLYVTYFGG E AGLEPDL+
Sbjct: 115 CKMALELLTQEFAIPVERLYVTYFGGDEAAGLEPDLE 151
>sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=ALA1 PE=1 SV=1
Length = 969
Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust.
Identities = 256/592 (43%), Positives = 337/592 (56%), Gaps = 81/592 (13%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F DYFKKQ H YV SS V+P +DPTLLFANAGMNQYKPIFLGTVDP SD A L RA N+
Sbjct: 32 TFLDYFKKQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFASLKRAANS 91
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHI---IPGSMKDNFWEMGETGPCGPCSE 270
QKCIRAGGKHNDL+DVG+D YHHTFFE+L D WE+ T G +
Sbjct: 92 QKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWEL-LTKVYGLQED 150
Query: 271 LHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQ---RSMKDNFWEMGETGPCGPC 327
Y GG L +P +A K+ E+ S++DNFWEMG+ GPCGPC
Sbjct: 151 RLYVTYFGGDEKQGL----EPDLEAKNFWLKVGVPEDHILPGSVEDNFWEMGDQGPCGPC 206
Query: 328 SELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFER 387
SE+HYDRIGG RNA+ LVN DDP+VLE+WN+VFIQYNRE DG+L+ LP KHID GMGFER
Sbjct: 207 SEIHYDRIGG-RNASALVNMDDPNVLEVWNVVFIQYNREADGNLRTLPNKHIDTGMGFER 265
Query: 388 LVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLT 447
LVS++Q+K SNYDTDVF+P+F+ I++ TG PY G+ G EDK+GID AYRV+ADH RTLT
Sbjct: 266 LVSILQNKYSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHVRTLT 325
Query: 448 IALADGGRPDNTGRGL---------KPLPKKHIDCGMG--FERLVSIIQDKRSNYDTDVF 496
A+ DGG P+N GRG +K+++ +G F++LV ++ ++ ++
Sbjct: 326 FAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFPEI- 384
Query: 497 GTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDM 556
+GA + + EE+ A+TL RG E +
Sbjct: 385 SSGAQDLKEILNEEE-----------LSFAKTLD-------------RG------EKLFE 414
Query: 557 AYRVLADHARTLTIALADGGRP-DNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNT 615
Y ++A T++ D R D G L R++ ++ G + S
Sbjct: 415 QYAIIASKTPEQTLSGKDVWRLYDTYGFPVDLTRLMAEEAGLKIDEEGFERAKEESRE-- 472
Query: 616 VVDLLLLSQGKGATIEDT-IGLDIHSITDL-QTRGVPPTDDSPKYRYTPTQPDTADGAYE 673
S+G G T + LD+H++++L Q +P T+D KY
Sbjct: 473 ------ASKGSGTKDGKTLVKLDVHALSELDQNDAIPKTNDEFKYG-------------- 512
Query: 674 FEPCEGTVVGLRYNKQFVDSVSS-GTEAGILLDKSNFYAEQGGQIYDEGFMI 724
E + VVG+ +FVDS+ + GILLDK+ FYAEQGGQ YD G ++
Sbjct: 513 LENVKAKVVGIYDGSKFVDSIEDPSIQYGILLDKTPFYAEQGGQEYDTGKLV 564
Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 123/198 (62%), Gaps = 40/198 (20%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
+YKPIFLGTVDP SD A L RA N+QKCIRAGGKHNDL+DVG+D YHHTFFEMLGNWSFG
Sbjct: 67 QYKPIFLGTVDPASDFASLKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFG 126
Query: 158 DYFKKQH-DYVHSSCVIPSDDPTLLFANAGMNQ---YKPIFLGTVDPNSDMAKLVRAVNT 213
DYFKK+ DY LL G+ + Y F G D + + A N
Sbjct: 127 DYFKKEAIDYSWE----------LLTKVYGLQEDRLYVTYFGG--DEKQGLEPDLEAKNF 174
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
++ G +PE HI+PGS++DNFWEMG+ GPCGPCSE+HY
Sbjct: 175 --WLKVG---------------------VPEDHILPGSVEDNFWEMGDQGPCGPCSEIHY 211
Query: 274 DRIGGGRNAADLVNQDDP 291
DRI GGRNA+ LVN DDP
Sbjct: 212 DRI-GGRNASALVNMDDP 228
Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/102 (78%), Positives = 89/102 (87%), Gaps = 1/102 (0%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+D+F KK+QH YV SS V+P +DPTLLFANAGMNQYKPIFLGTVDP SD A L RA N+Q
Sbjct: 34 LDYF-KKQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFASLKRAANSQ 92
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
KCIRAGGKHNDL+DVG+D YHHTFFEMLGNWSFGDYFK + I
Sbjct: 93 KCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAI 134
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 740 LTTVYKIPADRLYVTYFGGHEPAGLEPDLD---YVLRRILRRAVRYGTEKLGAKP--RLF 794
+ T Y++ AD + F + G P+ + YVLRRILRR RY K P F
Sbjct: 310 IDTAYRVIADHVRTLTFAICD--GGVPNNEGRGYVLRRILRRGSRY-VRKYMNYPIGGFF 366
Query: 795 SSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLAQCPIQ 854
LV+ V++ + FPE++ Q + +I++EEE F KTL RG L + ++ P Q
Sbjct: 367 QQLVDVVIEQNKEIFPEISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQ 426
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 29/39 (74%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLD 769
E ++WELLT VY + DRLYVTYFGG E GLEPDL+
Sbjct: 132 EAIDYSWELLTKVYGLQEDRLYVTYFGGDEKQGLEPDLE 170
>sp|P21894|SYAC_BOMMO Alanine--tRNA ligase, cytoplasmic OS=Bombyx mori PE=1 SV=1
Length = 967
Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/331 (62%), Positives = 234/331 (70%), Gaps = 45/331 (13%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F D+F KK H YVHSS IP DDPTLLFANAGMNQ+KPIFLG+VDPNSDMA+ +R VNT
Sbjct: 13 TFIDFFIKKGHKYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGSVDPNSDMAQYIRVVNT 72
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGE---TGPCGPCSE 270
QKCIRAGGKHNDLDDVGKDVYHHTFFE++ W G+ C E
Sbjct: 73 QKCIRAGGKHNDLDDVGKDVYHHTFFEMMGN------------WSFGDYFKKEICAWAWE 120
Query: 271 LHYDRIGGGRNAADLVN-QDDPAY------------------KADLLPSKLTRLENQRSM 311
L D R + + DP+ +A +LP SM
Sbjct: 121 LLTDVFKLSRERLYVTYFEGDPSSGLEPDLECRNIWLNLGVPEAHILPG---------SM 171
Query: 312 KDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSL 371
KDNFWEMGETGPCGPCSELHYDRIG R AA LVN DDPDVLEIWNLVFIQ+NRETDGSL
Sbjct: 172 KDNFWEMGETGPCGPCSELHYDRIGD-REAAHLVNMDDPDVLEIWNLVFIQFNRETDGSL 230
Query: 372 KPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEG 431
K LP KHIDCG+G ERLVSVIQ+KR+NYDTD F+P+F+AI+ TG PY G+VG +D +G
Sbjct: 231 KLLPTKHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGVDDVDG 290
Query: 432 IDMAYRVLADHARTLTIALADGGRPDNTGRG 462
IDMAYRVLADHARTLTIAL+DGG PDNTGRG
Sbjct: 291 IDMAYRVLADHARTLTIALSDGGCPDNTGRG 321
Score = 209 bits (533), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 110/194 (56%), Positives = 127/194 (65%), Gaps = 32/194 (16%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++KPIFLG+VDPNSDMA+ +R VNTQKCIRAGGKHNDLDDVGKDVYHHTFFEM+GNWSFG
Sbjct: 48 QFKPIFLGSVDPNSDMAQYIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFG 107
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFKK+ C + T +F + Y F G DP+S + + N +
Sbjct: 108 DYFKKE------ICAWAWELLTDVFKLSRERLYVTYFEG--DPSSGLEPDLECRNI--WL 157
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIG 277
G +PE+HI+PGSMKDNFWEMGETGPCGPCSELHYDRI
Sbjct: 158 NLG---------------------VPEAHILPGSMKDNFWEMGETGPCGPCSELHYDRI- 195
Query: 278 GGRNAADLVNQDDP 291
G R AA LVN DDP
Sbjct: 196 GDREAAHLVNMDDP 209
Score = 186 bits (471), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 89/118 (75%), Positives = 99/118 (83%), Gaps = 2/118 (1%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF+KK H YVHSS IP DDPTLLFANAGMNQ+KPIFLG+VDPNSDMA+ +R VNTQ
Sbjct: 15 IDFFIKKG-HKYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGSVDPNSDMAQYIRVVNTQ 73
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVR 118
KCIRAGGKHNDLDDVGKDVYHHTFFEM+GNWSFGDYFK K I + +D+ KL R
Sbjct: 74 KCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFK-KEICAWAWELLTDVFKLSR 130
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 103/171 (60%), Gaps = 48/171 (28%)
Query: 459 TGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVF---------GTGAPPYQGRVGE 509
T LK LP KHIDCG+G ERLVS+IQ+KR+NYDTD F TG PY G+VG
Sbjct: 226 TDGSLKLLPTKHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGV 285
Query: 510 EDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLT 569
+D +GIDMAYRVLADHARTLTIAL+DGG PDNTG
Sbjct: 286 DDVDGIDMAYRVLADHARTLTIALSDGGCPDNTG-------------------------- 319
Query: 570 IALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRILRRAVRY +EKL AKP F SLV TVV+LL
Sbjct: 320 -------------RGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVELL 357
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 621 LLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGT 680
L+SQGK A ED I LD+H+I+ LQ G+P TDDSPKY Y P+ D D Y F PC
Sbjct: 450 LVSQGKAAGQEDLIALDVHAISHLQDTGIPATDDSPKYNYLPSSTD-KDALYTFAPCTAK 508
Query: 681 VVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDE 729
+V LR NK+FV +SSG E G++LD+++FYAEQGGQI+DEG+M+ ++DE
Sbjct: 509 IVALRKNKEFVSEISSGQECGVILDRTSFYAEQGGQIFDEGYMVKIDDE 557
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 62/79 (78%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRILRRAVRY +EKL AKP F SLV TVV+LLGD FPE+ KDP SIV +I+EEE Q
Sbjct: 322 YVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVELLGDVFPEIKKDPDSIVHVINEEEVQ 381
Query: 830 FLKTLSRGRSLLNRNESHL 848
FLKTL RGR+LL R L
Sbjct: 382 FLKTLLRGRNLLYRTIEKL 400
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLD 769
E+C WAWELLT V+K+ +RLYVTYF G +GLEPDL+
Sbjct: 113 EICAWAWELLTDVFKLSRERLYVTYFEGDPSSGLEPDLE 151
>sp|O01541|SYAC_CAEEL Alanine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=aars-2 PE=2 SV=1
Length = 968
Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/321 (62%), Positives = 240/321 (74%), Gaps = 24/321 (7%)
Query: 155 SFGDYF--KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
+F ++F KK+H YVHSS VIP DDPTLLFANAGMNQ+KP+FLG DPNSD+AKL RAVN
Sbjct: 12 TFINFFREKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLAKLKRAVN 71
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF--------WEMGETGP 264
TQKCIRAGGKHNDLDDVGKDVYHHT+FE+L S D F WE+ T
Sbjct: 72 TQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGN-----WSFGDYFKKEIITWAWELLTTVY 126
Query: 265 CGPCSELHYDRIGGGRNAADLVNQDDPA---YKADLLPSKLTRLENQRSMKDNFWEMGET 321
P L+ GG + A+ V D A +++ +P + R+ N MKDNFWEMG+
Sbjct: 127 GIPAERLYVSVFGG--DEANGVPADSEARDIWRSVGVPDE--RILN-FGMKDNFWEMGDV 181
Query: 322 GPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDC 381
GPCGPCSE+HYDRIG R+A+ LVN DDP V+EIWNLVFIQ+NRE G LKPLP KHIDC
Sbjct: 182 GPCGPCSEIHYDRIGN-RDASHLVNADDPMVVEIWNLVFIQFNREEGGVLKPLPAKHIDC 240
Query: 382 GMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLAD 441
G+G ERL++V+QDK SNYDTD+F P+FEAI KG+G Y G +G+EDK+G+DMAYRV+AD
Sbjct: 241 GLGLERLIAVMQDKTSNYDTDIFQPIFEAIHKGSGVRAYTGFIGDEDKDGVDMAYRVVAD 300
Query: 442 HARTLTIALADGGRPDNTGRG 462
H RTLTIAL+DGGRPDN+GRG
Sbjct: 301 HVRTLTIALSDGGRPDNSGRG 321
Score = 189 bits (481), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 93/102 (91%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
++FF +KK+H YVHSS VIP DDPTLLFANAGMNQ+KP+FLG DPNSD+AKL RAVNTQ
Sbjct: 14 INFFREKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLAKLKRAVNTQ 73
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
KCIRAGGKHNDLDDVGKDVYHHT+FEMLGNWSFGDYFK + I
Sbjct: 74 KCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEII 115
Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 102/167 (61%), Gaps = 48/167 (28%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVF---------GTGAPPYQGRVGEEDKE 513
LKPLP KHIDCG+G ERL++++QDK SNYDTD+F G+G Y G +G+EDK+
Sbjct: 230 LKPLPAKHIDCGLGLERLIAVMQDKTSNYDTDIFQPIFEAIHKGSGVRAYTGFIGDEDKD 289
Query: 514 GIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALA 573
G+DMAYRV+ADH RTLTIAL+DGGRPDN+G
Sbjct: 290 GVDMAYRVVADHVRTLTIALSDGGRPDNSG------------------------------ 319
Query: 574 DGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRILRR VRY +EKL A+P F+SLV V+ +L
Sbjct: 320 ---------RGYVLRRILRRGVRYASEKLNAQPGFFASLVPVVISIL 357
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 77/107 (71%), Gaps = 2/107 (1%)
Query: 623 SQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVV 682
S G G DT+ LD+H++ +LQ +GVP TDDSPKY YT T + +D Y+FEPC G ++
Sbjct: 454 SAGTG-KFRDTLDLDVHALAELQQKGVPTTDDSPKYAYTFT-GEGSDAVYKFEPCVGKIL 511
Query: 683 GLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDE 729
+R + +FVD +++G E ILLD++NFYAEQGGQIYD G + VNDE
Sbjct: 512 AIRRDGKFVDQLAAGEEGAILLDRTNFYAEQGGQIYDVGVLTKVNDE 558
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 62/74 (83%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRILRR VRY +EKL A+P F+SLV V+ +LG+TFPEL++DP +++DII++EE+Q
Sbjct: 322 YVLRRILRRGVRYASEKLNAQPGFFASLVPVVISILGETFPELSRDPVTVMDIINDEEKQ 381
Query: 830 FLKTLSRGRSLLNR 843
FLKTLSRGR L R
Sbjct: 382 FLKTLSRGRVLFQR 395
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 29/37 (78%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPD 767
E+ TWAWELLTTVY IPA+RLYV+ FGG E G+ D
Sbjct: 113 EIITWAWELLTTVYGIPAERLYVSVFGGDEANGVPAD 149
>sp|P40825|SYA_YEAST Alanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ALA1 PE=1 SV=3
Length = 983
Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/315 (63%), Positives = 226/315 (71%), Gaps = 13/315 (4%)
Query: 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F DYFK K+H +V SS V+P DDPTLLFANAGMNQYKPIFLGTVDP SD L RA N+
Sbjct: 42 TFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTLKRAYNS 101
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH- 272
QKCIRAGGKHNDL+DVGKD YHHTFFE+L S D F + T +E++
Sbjct: 102 QKCIRAGGKHNDLEDVGKDSYHHTFFEMLGN-----WSFGDYFKKEAITYSWTLLTEVYG 156
Query: 273 --YDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQR---SMKDNFWEMGETGPCGPC 327
DR+ D +P +A L + ++ + KDNFWEMG+ GPCGPC
Sbjct: 157 IPKDRLYVTYFEGDEKLGLEPDTEARELWKNVGVPDDHILPGNAKDNFWEMGDQGPCGPC 216
Query: 328 SELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFER 387
SE+HYDRIGG RNAA LVN DDPDVLE+WNLVFIQ+NRE DGSLKPLP KHID GMGFER
Sbjct: 217 SEIHYDRIGG-RNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMGFER 275
Query: 388 LVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLT 447
LVSV+QD RSNYDTDVF PLFE IQ+ T PY G GE DK+GID AYRVLADH RTLT
Sbjct: 276 LVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVRTLT 335
Query: 448 IALADGGRPDNTGRG 462
ALADGG P+N GRG
Sbjct: 336 FALADGGVPNNEGRG 350
Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/102 (77%), Positives = 87/102 (85%), Gaps = 1/102 (0%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+D+F K K+H +V SS V+P DDPTLLFANAGMNQYKPIFLGTVDP SD L RA N+Q
Sbjct: 44 LDYF-KSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTLKRAYNSQ 102
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
KCIRAGGKHNDL+DVGKD YHHTFFEMLGNWSFGDYFK + I
Sbjct: 103 KCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAI 144
Score = 132 bits (333), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 87/165 (52%), Gaps = 49/165 (29%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFG---------TGAPPYQGRVGEEDKE 513
LKPLP KHID GMGFERLVS++QD RSNYDTDVF T PY G GE DK+
Sbjct: 259 LKPLPAKHIDTGMGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKD 318
Query: 514 GIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALA 573
GID AYRVLADH RTLT ALADGG P+N G
Sbjct: 319 GIDTAYRVLADHVRTLTFALADGGVPNNEG------------------------------ 348
Query: 574 DGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKP-RLFSSLVNTVV 617
RGYVLRRILRR RY + + FS+L T++
Sbjct: 349 ---------RGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLI 384
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 740 LTTVYKIPADRLYVTYFGGHEPAGLEPDLD---YVLRRILRRAVRYGTEKLGAKP-RLFS 795
+ T Y++ AD + F + G P+ + YVLRRILRR RY + + FS
Sbjct: 320 IDTAYRVLADHVRTLTFALAD--GGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFS 377
Query: 796 SLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLAQC 851
+L T++ + D FPEL KDP + +I+DEEE F KTL RG L + S ++
Sbjct: 378 TLAPTLISQVQDIFPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKT 433
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 15/94 (15%)
Query: 632 DTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFV 691
D I L++H +++L VP T+D KY +A+ EGT++ L FV
Sbjct: 494 DLIKLNVHELSELNDAKVPKTNDEFKY-------GSAN-------VEGTILKLHDGTNFV 539
Query: 692 DSVSS-GTEAGILLDKSNFYAEQGGQIYDEGFMI 724
D ++ G + GI+LDK+ FYAEQGGQ YD G ++
Sbjct: 540 DEITEPGKKYGIILDKTCFYAEQGGQEYDTGKIV 573
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 28/39 (71%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLD 769
E T++W LLT VY IP DRLYVTYF G E GLEPD +
Sbjct: 142 EAITYSWTLLTEVYGIPKDRLYVTYFEGDEKLGLEPDTE 180
>sp|P36428|SYA_ARATH Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3
Length = 1003
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/311 (59%), Positives = 222/311 (71%), Gaps = 8/311 (2%)
Query: 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
++ D+F+ K H + SS V+P +DPTLLFANAGMNQYKPIFLGT DPN++++KL RA NT
Sbjct: 67 TYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRACNT 126
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSE 270
QKCIRAGGKHNDLDDVGKD YHHTFFE+L K+ WE+ P
Sbjct: 127 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLPTDR 186
Query: 271 LHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSEL 330
++ GG A + + +LPS KDNFWEMG+TGPCGPC+E+
Sbjct: 187 IYATYFGGDEKAGLQPDNEARDIWLKVLPSGRVL---PFGCKDNFWEMGDTGPCGPCTEI 243
Query: 331 HYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVS 390
HYDRIG R+AA LVN DDP LEIWNLVFIQ+NRE+DGSLKPLP KH+D GMGFERL S
Sbjct: 244 HYDRIGN-RDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERLTS 302
Query: 391 VIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIAL 450
V+Q+K SNYDTDVF+P+F+ IQK TGA PY G+VG ED + +DMAYRV+ADH RTL+ A+
Sbjct: 303 VLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSFAI 362
Query: 451 ADGGRPDNTGR 461
ADG RP N GR
Sbjct: 363 ADGSRPGNEGR 373
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 122/199 (61%), Gaps = 43/199 (21%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
+YKPIFLGT DPN++++KL RA NTQKCIRAGGKHNDLDDVGKD YHHTFFEMLGNWSFG
Sbjct: 102 QYKPIFLGTADPNTELSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG 161
Query: 158 DYFKKQH-----DYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
DYFKK+ + + +P+D Y F G D + +
Sbjct: 162 DYFKKEAIEWAWELLTKVYGLPTD-----------RIYATYFGG--DEKAGLQP------ 202
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH 272
D+ +D++ ++LP ++P KDNFWEMG+TGPCGPC+E+H
Sbjct: 203 --------------DNEARDIW----LKVLPSGRVLPFGCKDNFWEMGDTGPCGPCTEIH 244
Query: 273 YDRIGGGRNAADLVNQDDP 291
YDRI G R+AA LVN DDP
Sbjct: 245 YDRI-GNRDAASLVNNDDP 262
Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/102 (76%), Positives = 88/102 (86%), Gaps = 1/102 (0%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF + K H + SS V+P +DPTLLFANAGMNQYKPIFLGT DPN++++KL RA NTQ
Sbjct: 69 VDFF-RGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRACNTQ 127
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
KCIRAGGKHNDLDDVGKD YHHTFFEMLGNWSFGDYFK + I
Sbjct: 128 KCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAI 169
Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 95/167 (56%), Gaps = 48/167 (28%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVF---------GTGAPPYQGRVGEEDKE 513
LKPLP KH+D GMGFERL S++Q+K SNYDTDVF TGA PY G+VG ED +
Sbjct: 283 LKPLPAKHVDTGMGFERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVD 342
Query: 514 GIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALA 573
+DMAYRV+ADH RTL+ A+ADG RP N
Sbjct: 343 RVDMAYRVVADHIRTLSFAIADGSRPGN-------------------------------- 370
Query: 574 DGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
GR YVLRRILRRAVRYG E L A+ F+ LV++V+ ++
Sbjct: 371 -------EGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVM 410
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 743 VYKIPADRLYVTYFG---GHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVN 799
Y++ AD + F G P +YVLRRILRRAVRYG E L A+ F+ LV+
Sbjct: 347 AYRVVADHIRTLSFAIADGSRPGN--EGREYVLRRILRRAVRYGKEILKAEEGFFNGLVS 404
Query: 800 TVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRG 837
+V+ ++GD F EL + + I DII EEE F KTL++G
Sbjct: 405 SVIRVMGDVFTELKEHEKKITDIIKEEEASFCKTLAKG 442
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 28/37 (75%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPD 767
E WAWELLT VY +P DR+Y TYFGG E AGL+PD
Sbjct: 167 EAIEWAWELLTKVYGLPTDRIYATYFGGDEKAGLQPD 203
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 633 TIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVD 692
I +D + + L GV TDDS KY + F+ E + + F++
Sbjct: 515 AIVMDADATSTLHKAGVSATDDSFKYIW-------------FQDHESELKAIYTGSTFLE 561
Query: 693 SVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVC 733
S ++ G++L ++FYAEQGGQI+D G + G VC
Sbjct: 562 SSAASDNVGLVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVC 602
>sp|Q5AQL1|SYA_EMENI Alanine--tRNA ligase OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ala1 PE=3 SV=2
Length = 961
Score = 358 bits (919), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 188/313 (60%), Positives = 218/313 (69%), Gaps = 9/313 (2%)
Query: 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F YF+ K H +V SS V P DPTLLF NAGMNQ+K IFLGTV+PNSD A+L AVN+
Sbjct: 19 TFLQYFQGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQLKSAVNS 78
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSE 270
QKCIRAGGKHNDLDDVGKD YHHTFFE+L K+ WE+
Sbjct: 79 QKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQYSWELLTQVYGLDPGR 138
Query: 271 LHYDRIGGGRNAADLVNQDDPA-YKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSE 329
L+ G + + + A +KA +P N MKDNFWEMG+ GPCGPCSE
Sbjct: 139 LYVTYFEGNKEGGLQPDLEAKALWKAVGVPEDHILPGN---MKDNFWEMGDQGPCGPCSE 195
Query: 330 LHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLV 389
+HYDRIGG RNAA LVNQDDP+VLEIWN VFIQYNRE DGSL+ LP KH+D GMGFERLV
Sbjct: 196 IHYDRIGG-RNAASLVNQDDPNVLEIWNNVFIQYNRENDGSLRSLPNKHVDTGMGFERLV 254
Query: 390 SVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIA 449
SV+QDK SNYDTDVF P+F+ IQ TGA YQGR G +D +GID AYRV+ADH RTL A
Sbjct: 255 SVLQDKSSNYDTDVFGPIFQTIQVITGAREYQGRFGTDDSDGIDTAYRVVADHVRTLMFA 314
Query: 450 LADGGRPDNTGRG 462
++DG P+N GRG
Sbjct: 315 ISDGVVPNNEGRG 327
Score = 201 bits (510), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 127/198 (64%), Gaps = 40/198 (20%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K IFLGTV+PNSD A+L AVN+QKCIRAGGKHNDLDDVGKD YHHTFFEMLGNWSFG
Sbjct: 54 QFKSIFLGTVNPNSDFAQLKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFG 113
Query: 158 DYFKKQHDYVHSSCVIPSD----DPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
DYFKK+ + S + + DP L+ + ++ G + P+ + L +AV
Sbjct: 114 DYFKKEA--IQYSWELLTQVYGLDPGRLY----VTYFEGNKEGGLQPDLEAKALWKAVG- 166
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
+PE HI+PG+MKDNFWEMG+ GPCGPCSE+HY
Sbjct: 167 ----------------------------VPEDHILPGNMKDNFWEMGDQGPCGPCSEIHY 198
Query: 274 DRIGGGRNAADLVNQDDP 291
DRI GGRNAA LVNQDDP
Sbjct: 199 DRI-GGRNAASLVNQDDP 215
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/99 (74%), Positives = 82/99 (82%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
+ + K H +V SS V P DPTLLF NAGMNQ+K IFLGTV+PNSD A+L AVN+QKCI
Sbjct: 23 YFQGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQLKSAVNSQKCI 82
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
RAGGKHNDLDDVGKD YHHTFFEMLGNWSFGDYFK + I
Sbjct: 83 RAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAI 121
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 93/159 (58%), Gaps = 31/159 (19%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L+ LP KH+D GMGFERLVS++QDK SNYDTDVFG P +Q
Sbjct: 236 LRSLPNKHVDTGMGFERLVSVLQDKSSNYDTDVFG---PIFQ------------------ 274
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
TI + G R + GR G +D +GID AYRV+ADH RTL A++DG P+N G
Sbjct: 275 -------TIQVITGAR-EYQGR-FGTDDSDGIDTAYRVVADHVRTLMFAISDGVVPNNEG 325
Query: 583 RGYVLRRILRRAVRYGTEKLGAKP-RLFSSLVNTVVDLL 620
RGYV+RR+LRR RY + + FS +V TVV+ L
Sbjct: 326 RGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTVVEQL 364
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 740 LTTVYKIPADRLYVTYFGGHEPAGLEPDLD---YVLRRILRRAVRYGTEKLGAKP-RLFS 795
+ T Y++ AD + F + G+ P+ + YV+RR+LRR RY + + FS
Sbjct: 297 IDTAYRVVADHVRTLMFAISD--GVVPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFS 354
Query: 796 SLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRG 837
+V TVV+ LGD FPEL + Q +++I++EEE F KTL RG
Sbjct: 355 KIVPTVVEQLGDMFPELKQKQQDVIEILNEEEISFAKTLDRG 396
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 19/116 (16%)
Query: 623 SQGKGATIEDTIGLDIHSITDLQ-TRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTV 681
S+G+ T ++ LD+H + L+ GVP TDDS K+ E +
Sbjct: 461 SKGQKKTTTGSVKLDVHDLGKLEKMNGVPKTDDSAKF--------------EIGNVTAQI 506
Query: 682 VGLRYNKQFVDSVSS---GTEAGILLDKSNFYAEQGGQIYDEG-FMIGVNDELEVC 733
+ + K F S + + GI+LD++NFYAEQGGQ D G +I ELEV
Sbjct: 507 KAIYHGKTFHSSTQNLDDSEQIGIILDRTNFYAEQGGQENDTGRIVIDGQAELEVV 562
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLD 769
E ++WELLT VY + RLYVTYF G++ GL+PDL+
Sbjct: 119 EAIQYSWELLTQVYGLDPGRLYVTYFEGNKEGGLQPDLE 157
>sp|O13914|SYA_SCHPO Alanine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ala1 PE=1 SV=1
Length = 959
Score = 357 bits (916), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 186/315 (59%), Positives = 225/315 (71%), Gaps = 13/315 (4%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F YF+ H V SS VIP DDPTLLFANAGMNQ+KPIFLGTVDP+SD AKL RA ++
Sbjct: 18 TFLKYFEDHGHTIVPSSSVIPYDDPTLLFANAGMNQFKPIFLGTVDPSSDFAKLKRACDS 77
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSE 270
QKCIRAGGKHNDL+DVGKD YHHT FE+L K+ W++ T G +
Sbjct: 78 QKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIAMAWDL-LTNVYGLKKD 136
Query: 271 LHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQR---SMKDNFWEMGETGPCGPC 327
Y GG + L +P +A L + E++ S+KDNFWEMG+ GPCGPC
Sbjct: 137 QLYVTYFGGHEESGL----EPDLEARQLWLDIGIDESRVIPGSLKDNFWEMGDQGPCGPC 192
Query: 328 SELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFER 387
SE+HYDRIG R +LVN DDP+VLEIWN+VFIQ+NRE DGSL+PLP +H+D GMGFER
Sbjct: 193 SEIHYDRIGN-RTVPELVNMDDPNVLEIWNIVFIQFNREKDGSLRPLPNRHVDTGMGFER 251
Query: 388 LVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLT 447
LVSVIQ+K SNYDTDVF P+F IQ+ T A PY G++G+ED +GID AYRV+ADH RTLT
Sbjct: 252 LVSVIQNKTSNYDTDVFSPIFAKIQELTNARPYTGKMGDEDVDGIDTAYRVVADHVRTLT 311
Query: 448 IALADGGRPDNTGRG 462
A++DGG P+N GRG
Sbjct: 312 FAISDGGVPNNEGRG 326
Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 121/198 (61%), Gaps = 40/198 (20%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++KPIFLGTVDP+SD AKL RA ++QKCIRAGGKHNDL+DVGKD YHHT FEMLGNWSFG
Sbjct: 53 QFKPIFLGTVDPSSDFAKLKRACDSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFG 112
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGT----VDPNSDMAKLVRAVNT 213
DYFKK+ + + D T ++ Y F G ++P+ + +L
Sbjct: 113 DYFKKE------AIAMAWDLLTNVYGLKKDQLYVTYFGGHEESGLEPDLEARQLWL---- 162
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
D+G D ES +IPGS+KDNFWEMG+ GPCGPCSE+HY
Sbjct: 163 --------------DIGID-----------ESRVIPGSLKDNFWEMGDQGPCGPCSEIHY 197
Query: 274 DRIGGGRNAADLVNQDDP 291
DRI G R +LVN DDP
Sbjct: 198 DRI-GNRTVPELVNMDDP 214
Score = 163 bits (412), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/96 (78%), Positives = 82/96 (85%)
Query: 10 HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKH 69
H V SS VIP DDPTLLFANAGMNQ+KPIFLGTVDP+SD AKL RA ++QKCIRAGGKH
Sbjct: 28 HTIVPSSSVIPYDDPTLLFANAGMNQFKPIFLGTVDPSSDFAKLKRACDSQKCIRAGGKH 87
Query: 70 NDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
NDL+DVGKD YHHT FEMLGNWSFGDYFK + I +
Sbjct: 88 NDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIAMA 123
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 92/168 (54%), Gaps = 49/168 (29%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFG---------TGAPPYQGRVGEEDKE 513
L+PLP +H+D GMGFERLVS+IQ+K SNYDTDVF T A PY G++G+ED +
Sbjct: 235 LRPLPNRHVDTGMGFERLVSVIQNKTSNYDTDVFSPIFAKIQELTNARPYTGKMGDEDVD 294
Query: 514 GIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALA 573
GID AYRV+ADH RTLT A++DGG P+N G
Sbjct: 295 GIDTAYRVVADHVRTLTFAISDGGVPNNEG------------------------------ 324
Query: 574 DGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKP-RLFSSLVNTVVDLL 620
RGYVLRRILRR RY +K G FS L TVV+ +
Sbjct: 325 ---------RGYVLRRILRRGARYVRKKFGVPIGNFFSRLSLTVVEQM 363
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 740 LTTVYKIPADRLYVTYFGGHEPAGLEPDLD---YVLRRILRRAVRYGTEKLGAKP-RLFS 795
+ T Y++ AD + F + G P+ + YVLRRILRR RY +K G FS
Sbjct: 296 IDTAYRVVADHVRTLTFAISD--GGVPNNEGRGYVLRRILRRGARYVRKKFGVPIGNFFS 353
Query: 796 SLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLAQCP 852
L TVV+ +GD FPEL + + +++DEEEE F +TL RG + + + + P
Sbjct: 354 RLSLTVVEQMGDFFPELKRKVDDVRELLDEEEESFSRTLDRGEKMFEQYAAAAKKTP 410
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 30/39 (76%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLD 769
E AW+LLT VY + D+LYVTYFGGHE +GLEPDL+
Sbjct: 118 EAIAMAWDLLTNVYGLKKDQLYVTYFGGHEESGLEPDLE 156
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 20/108 (18%)
Query: 627 GATIEDTIGLDIHSITDL-QTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLR 685
G++ +D + LD+H++ L + +P TDD K+ + + G+
Sbjct: 467 GSSGDDLLVLDVHALGALSKMDDIPETDDVFKHNSVSLK--------------SVIKGIY 512
Query: 686 YNKQFVDSV---SSGTEAGILLDKSNFYAEQGGQIYDEGFMI--GVND 728
+ F S +SG + G+LLD++NFYAEQGGQ YD G ++ GV D
Sbjct: 513 HKGGFQKSTEGFNSGEQLGLLLDRTNFYAEQGGQEYDTGHIVIDGVAD 560
>sp|Q54Y20|SYAC_DICDI Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=alaS PE=2 SV=1
Length = 946
Score = 349 bits (895), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 179/318 (56%), Positives = 222/318 (69%), Gaps = 18/318 (5%)
Query: 155 SFGDYFKK--QHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
+F D+F++ +H +V SS VIP DDPTLLFANAGMNQ+KPIFLG V+P S+ AKL RAVN
Sbjct: 9 TFIDFFREKCEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQAKLKRAVN 68
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH 272
+QKCIRAGGKHNDLDDVGKD YHHTFFE+L S + F + T +E++
Sbjct: 69 SQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-----WSFGNYFKKEAITWAWELLTEVY 123
Query: 273 YDRIGGGRNAADLVNQD-DPAYKADLLPSKL--TRLENQR----SMKDNFWEMGETGPCG 325
++ R D + +ADL L L +R MK+NFWEMG+ GPCG
Sbjct: 124 --KLDKERLYVTYFRGDPEKGLEADLEAKNLWLQYLPEERVLPFGMKENFWEMGDQGPCG 181
Query: 326 PCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGF 385
PCSE+HYD++ G R+ A VN DDP ++EIWNLVFIQYNRE D SL+PLP+KH+D GMG
Sbjct: 182 PCSEIHYDKVEG-RDGASFVNADDPTLIEIWNLVFIQYNREADKSLRPLPQKHVDTGMGL 240
Query: 386 ERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAP-PYQGRVGEEDKEGIDMAYRVLADHAR 444
ERL S+IQ +NYDTDVF+P+F AIQ+ TG P PY G+VG ED + +DMAYRV+ADH R
Sbjct: 241 ERLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAEDTQQVDMAYRVIADHIR 300
Query: 445 TLTIALADGGRPDNTGRG 462
TLT ++ADG P GRG
Sbjct: 301 TLTFSIADGAAPSVDGRG 318
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 116/194 (59%), Gaps = 33/194 (17%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++KPIFLG V+P S+ AKL RAVN+QKCIRAGGKHNDLDDVGKD YHHTFFEMLGNWSFG
Sbjct: 45 QFKPIFLGQVNPKSEQAKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG 104
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
+YFKK+ + + T ++ Y F G DP + + A N
Sbjct: 105 NYFKKE------AITWAWELLTEVYKLDKERLYVTYFRG--DPEKGLEADLEAKN----- 151
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIG 277
+ + LPE ++P MK+NFWEMG+ GPCGPCSE+HYD++
Sbjct: 152 -------------------LWLQYLPEERVLPFGMKENFWEMGDQGPCGPCSEIHYDKV- 191
Query: 278 GGRNAADLVNQDDP 291
GR+ A VN DDP
Sbjct: 192 EGRDGASFVNADDP 205
Score = 176 bits (447), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 79/102 (77%), Positives = 89/102 (87%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF +K +H +V SS VIP DDPTLLFANAGMNQ+KPIFLG V+P S+ AKL RAVN+Q
Sbjct: 11 IDFFREKCEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQAKLKRAVNSQ 70
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
KCIRAGGKHNDLDDVGKD YHHTFFEMLGNWSFG+YFK + I
Sbjct: 71 KCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAI 112
Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 91/167 (54%), Gaps = 49/167 (29%)
Query: 461 RGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFG---------TGAP-PYQGRVGEE 510
+ L+PLP+KH+D GMG ERL SIIQ +NYDTDVF TG P PY G+VG E
Sbjct: 224 KSLRPLPQKHVDTGMGLERLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAE 283
Query: 511 DKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTI 570
D + +DMAYRV+ADH RTLT ++ADG P +D
Sbjct: 284 DTQQVDMAYRVIADHIRTLTFSIADGAAP-------------SVD--------------- 315
Query: 571 ALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVV 617
GRG VLRRILRRAVRYG +KL A FS LV+ V+
Sbjct: 316 -----------GRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDVVI 351
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 744 YKIPADRLYVTYFGGHEPAGLEPDLD---YVLRRILRRAVRYGTEKLGAKPRLFSSLVNT 800
Y++ AD + F + G P +D VLRRILRRAVRYG +KL A FS LV+
Sbjct: 292 YRVIADHIRTLTFSIAD--GAAPSVDGRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDV 349
Query: 801 VVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRG 837
V+ G+ FPEL K P+ I ++ EE+ F KTL +G
Sbjct: 350 VIANFGEFFPELRKKPEHIKMVLTREEDMFNKTLEKG 386
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 18/105 (17%)
Query: 626 KGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLR 685
K +E T+G + ++ L+ + PTDDS KY+ Q +V+
Sbjct: 453 KEKKVELTLGAEANAW--LKNNDIKPTDDSFKYKQHEIQ---------------SVIKAI 495
Query: 686 YN-KQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDE 729
+N K+FVD+ GT G++L+ SNFYAEQGGQIYD G + ++D+
Sbjct: 496 WNGKEFVDTAPKGTLIGVVLENSNFYAEQGGQIYDIGQLSFIDDQ 540
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 28/39 (71%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLD 769
E TWAWELLT VYK+ +RLYVTYF G GLE DL+
Sbjct: 110 EAITWAWELLTEVYKLDKERLYVTYFRGDPEKGLEADLE 148
>sp|Q3ATN3|SYA_CHLCH Alanine--tRNA ligase OS=Chlorobium chlorochromatii (strain CaD3)
GN=alaS PE=3 SV=1
Length = 886
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/322 (50%), Positives = 200/322 (62%), Gaps = 44/322 (13%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
SF D+F +K H V S+ VIP+DDPTLLF NAGMNQ+K +FL D S VRA +T
Sbjct: 9 SFLDFFAQKGHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFL---DKGS--RPYVRAADT 63
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF--------WEMGETGPC 265
QKCIRA GKHNDL+DVG+D YHHTFFE+L S D + WE+
Sbjct: 64 QKCIRASGKHNDLEDVGRDTYHHTFFEMLGN-----WSFGDYYKLEAITWAWELFTVVWK 118
Query: 266 GPCSELHYDRIGGGRNAADLVNQDDPAYK-----ADLLPSKLTRLENQRSMKDNFWEMGE 320
P L+ A + DD +++ D+ P + R + KDNFWEMGE
Sbjct: 119 LPKERLY----------ATVYQDDDESFQIWKEQTDINPDHILRFGD----KDNFWEMGE 164
Query: 321 TGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHID 380
TGPCGPCSE+H D G + +LVN D V+E+WNLVFIQYNR++DG L+PLPKKH+D
Sbjct: 165 TGPCGPCSEIHIDLTPDG-SGKELVNVGDYRVIELWNLVFIQYNRQSDGHLEPLPKKHVD 223
Query: 381 CGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLA 440
GMGFER+V+V+Q K SNYD+DVF PLF+ I + TG R G D+A RV+A
Sbjct: 224 TGMGFERIVAVMQGKGSNYDSDVFQPLFDKITEITGV-----RYGASLDAPNDIAMRVIA 278
Query: 441 DHARTLTIALADGGRPDNTGRG 462
DHARTLT AL+DG P N GRG
Sbjct: 279 DHARTLTFALSDGAMPSNEGRG 300
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 78/102 (76%), Gaps = 6/102 (5%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF +K H V S+ VIP+DDPTLLF NAGMNQ+K +FL D S VRA +TQ
Sbjct: 11 LDFFAQKG-HTIVRSAPVIPADDPTLLFTNAGMNQFKDVFL---DKGS--RPYVRAADTQ 64
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
KCIRA GKHNDL+DVG+D YHHTFFEMLGNWSFGDY+K + I
Sbjct: 65 KCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKLEAI 106
Score = 120 bits (300), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 89/174 (51%), Gaps = 39/174 (22%)
Query: 117 VRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKQHDYVHSSCVIPSD 176
VRA +TQKCIRA GKHNDL+DVG+D YHHTFFEMLGNWSFGDY+K + + +
Sbjct: 58 VRAADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKLE------AITWAWE 111
Query: 177 DPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHH 236
T+++ Y ++ D + + K +N +R G
Sbjct: 112 LFTVVWKLPKERLYATVYQDD-DESFQIWKEQTDINPDHILRFGD--------------- 155
Query: 237 TFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDD 290
KDNFWEMGETGPCGPCSE+H D G + +LVN D
Sbjct: 156 ----------------KDNFWEMGETGPCGPCSEIHIDLTPDG-SGKELVNVGD 192
Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 129/315 (40%), Gaps = 77/315 (24%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQG-------RVGEEDKEGI 515
L+PLPKKH+D GMGFER+V+++Q K SNYD+DVF P + R G
Sbjct: 214 LEPLPKKHVDTGMGFERIVAVMQGKGSNYDSDVF---QPLFDKITEITGVRYGASLDAPN 270
Query: 516 DMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAY-RVLADHARTL-----T 569
D+A RV+ADHARTLT AL+DG P N GRG + Y R L H L T
Sbjct: 271 DIAMRVIADHARTLTFALSDGAMPSNEGRGYVLRRILRRALRYSRNLGYHQPILHQLVGT 330
Query: 570 IALADGGR-PDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLLSQGKGA 628
+ALA G P+ R + I++ L LFS LV L S GK
Sbjct: 331 LALAMGEVFPELVQRQEAVSAIIKAEEESFIVTLDRGIDLFSELVEK----LRASNGKVI 386
Query: 629 TIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYE-----FEPC----EG 679
D L T G P + T+ AD +E FE C +
Sbjct: 387 AGSDAFRL-------YDTYGFP---------FDLTRLMAADEGFEVDGEGFEHCMQEQKN 430
Query: 680 TVVGLRYNKQFVDS----------------------VSSGTEAGI---------LLDKSN 708
R KQ VD V S T GI +LD +
Sbjct: 431 RARSDRREKQRVDDDGAKWQWFSDVRASQFVGYDHLVHSATITGIRQGNGKLLLVLDATP 490
Query: 709 FYAEQGGQIYDEGFM 723
FYAE GGQ D G++
Sbjct: 491 FYAESGGQTGDNGWL 505
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 729 ELEVCTWAWELLTTVYKIPADRLYVTYF 756
+LE TWAWEL T V+K+P +RLY T +
Sbjct: 102 KLEAITWAWELFTVVWKLPKERLYATVY 129
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 784 TEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLN 842
+ LG + LV T+ +G+ FPEL + +++ II EEE F+ TL RG L +
Sbjct: 314 SRNLGYHQPILHQLVGTLALAMGEVFPELVQRQEAVSAIIKAEEESFIVTLDRGIDLFS 372
>sp|Q3B1I7|SYA_PELLD Alanine--tRNA ligase OS=Pelodictyon luteolum (strain DSM 273)
GN=alaS PE=3 SV=1
Length = 887
Score = 280 bits (716), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 154/314 (49%), Positives = 196/314 (62%), Gaps = 28/314 (8%)
Query: 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
SF D+F K H V S+ VIP+DDPTLLF NAGMNQ+K +FL RA +T
Sbjct: 9 SFLDFFAAKSHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLA-----KGTRPYTRAADT 63
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
QKCIRA GKHNDL+DVG+D YHHTFFE+L S D + E + +E+
Sbjct: 64 QKCIRASGKHNDLEDVGRDTYHHTFFEMLGN-----WSFGDYYKEEAISWAWELLTEVW- 117
Query: 274 DRIGGGRNAADLVNQDDP-----AYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCS 328
++ R A + + DD A K + PS + R + KDNFWEMGETGPCGPCS
Sbjct: 118 -KLPADRLYATVYHDDDESARIWAEKTSIEPSHILRFGD----KDNFWEMGETGPCGPCS 172
Query: 329 ELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERL 388
E+H D G + +LVN D +E+WNLVFIQY+R+ DG L+PLP++H+D GMGFER+
Sbjct: 173 EIHIDLTPDG-SGKELVNAGDHRAIELWNLVFIQYDRQPDGRLEPLPQRHVDTGMGFERV 231
Query: 389 VSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTI 448
+V+Q K SNYDTDVF+PLF+ + + TG G + D+A RV+ADHARTLT
Sbjct: 232 CAVMQSKASNYDTDVFLPLFQRLSELTGVTYGASMDGRQ-----DIAMRVIADHARTLTF 286
Query: 449 ALADGGRPDNTGRG 462
AL+DG P N GRG
Sbjct: 287 ALSDGAMPSNEGRG 300
Score = 136 bits (342), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 74/102 (72%), Gaps = 6/102 (5%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF K H V S+ VIP+DDPTLLF NAGMNQ+K +FL RA +TQ
Sbjct: 11 LDFF-AAKSHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLA-----KGTRPYTRAADTQ 64
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
KCIRA GKHNDL+DVG+D YHHTFFEMLGNWSFGDY+K + I
Sbjct: 65 KCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAI 106
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 86/158 (54%), Gaps = 36/158 (22%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L+PLP++H+D GMGFER+ +++Q K SNYDTDVF P +Q R+ E
Sbjct: 214 LEPLPQRHVDTGMGFERVCAVMQSKASNYDTDVF---LPLFQ-RLSE------------- 256
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
TG G D+A RV+ADHARTLT AL+DG P N G
Sbjct: 257 ------------------LTGVTYGASMDGRQDIAMRVIADHARTLTFALSDGAMPSNEG 298
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRILRRA+RY + LG + LV T+ D +
Sbjct: 299 RGYVLRRILRRALRY-SRDLGCSGPILHQLVGTLADSM 335
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYF 756
E +WAWELLT V+K+PADRLY T +
Sbjct: 104 EAISWAWELLTEVWKLPADRLYATVY 129
Score = 40.4 bits (93), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 787 LGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLL 841
LG + LV T+ D +GD F EL ++ II EEE F+ TL RG +
Sbjct: 317 LGCSGPILHQLVGTLADSMGDVFGELRDRRDAVERIIRAEEESFITTLDRGMEIF 371
>sp|A4SGJ6|SYA_PROVI Alanine--tRNA ligase OS=Prosthecochloris vibrioformis (strain DSM
265) GN=alaS PE=3 SV=2
Length = 885
Score = 280 bits (716), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 155/314 (49%), Positives = 195/314 (62%), Gaps = 28/314 (8%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
SF D+F K H V S+ VIP+DDPTLLF NAGMNQ+K +FL RA +T
Sbjct: 9 SFLDFFVGKSHAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLA-----KGTRSYSRAADT 63
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
QKCIRA GKHNDL+DVG+D YHHTFFE+L S D + E T + +
Sbjct: 64 QKCIRASGKHNDLEDVGRDTYHHTFFEMLGN-----WSFGDYYKEEAITWAWELLTVVW- 117
Query: 274 DRIGGGRNAADLVNQDDPAY-----KADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCS 328
++ R A + + DD ++ K + P + R + KDNFWEMGETGPCGPCS
Sbjct: 118 -KLPEERLYATVYHDDDESFRIWEEKTSIRPDHILRFGD----KDNFWEMGETGPCGPCS 172
Query: 329 ELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERL 388
E+H D G A LVN DDP +E+WNLVFIQY+R+ DG L+PLP++H+D GMGFER+
Sbjct: 173 EIHIDLTPDGSGRA-LVNADDPQAIELWNLVFIQYDRQVDGRLEPLPQRHVDTGMGFERV 231
Query: 389 VSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTI 448
+V+Q K SNYDTDVF PLF+ I + TG G + D+A RV+ADHARTL+
Sbjct: 232 CAVMQGKSSNYDTDVFRPLFDTITELTGV-----EYGASMHDPQDIAMRVIADHARTLSF 286
Query: 449 ALADGGRPDNTGRG 462
AL+DG P N GRG
Sbjct: 287 ALSDGAMPSNEGRG 300
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 75/102 (73%), Gaps = 6/102 (5%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF+ K H V S+ VIP+DDPTLLF NAGMNQ+K +FL RA +TQ
Sbjct: 11 LDFFVGKS-HAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLA-----KGTRSYSRAADTQ 64
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
KCIRA GKHNDL+DVG+D YHHTFFEMLGNWSFGDY+K + I
Sbjct: 65 KCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAI 106
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 88/158 (55%), Gaps = 36/158 (22%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L+PLP++H+D GMGFER+ +++Q K SNYDTDVF R L
Sbjct: 214 LEPLPQRHVDTGMGFERVCAVMQGKSSNYDTDVF-----------------------RPL 250
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
D T+T + TG G + D+A RV+ADHARTL+ AL+DG P N G
Sbjct: 251 FD---TIT---------ELTGVEYGASMHDPQDIAMRVIADHARTLSFALSDGAMPSNEG 298
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRILRRA+RY + LG + LV TV D +
Sbjct: 299 RGYVLRRILRRALRYAKD-LGYNKPILHRLVATVADSM 335
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%)
Query: 787 LGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLN 842
LG + LV TV D +GD FPEL ++ I+ EEE FL TL RG + N
Sbjct: 317 LGYNKPILHRLVATVADSMGDVFPELRDRQDAVARIVKAEEESFLVTLDRGIEIFN 372
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYF 756
E TWAWELLT V+K+P +RLY T +
Sbjct: 104 EAITWAWELLTVVWKLPEERLYATVY 129
>sp|Q8KG04|SYA_CHLTE Alanine--tRNA ligase OS=Chlorobium tepidum (strain ATCC 49652 / DSM
12025 / TLS) GN=alaS PE=3 SV=1
Length = 885
Score = 275 bits (704), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 154/318 (48%), Positives = 197/318 (61%), Gaps = 36/318 (11%)
Query: 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
SF D+F K+H V S+ VIP++DPTLLF NAGMNQ+K +FLG + RA +T
Sbjct: 9 SFLDFFAGKEHRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLG-----KGTREYTRAADT 63
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGE---TGPCGPCSE 270
QKCIRA GKHNDL+DVG+D YHHTFFE+L W G+ G E
Sbjct: 64 QKCIRASGKHNDLEDVGRDTYHHTFFEMLGN------------WSFGDYYKKEAIGWAWE 111
Query: 271 LHYD--RIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMK----DNFWEMGETGPC 324
L + ++ R A + + D+ ++K L T +E+ +K DNFWEMGETGPC
Sbjct: 112 LMTEVWKLPKERLYATVYHDDEESFK---LWQSETDIEHSHILKFGDKDNFWEMGETGPC 168
Query: 325 GPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMG 384
GPCSE+H D G + LVN D V+E+WNLVFIQY+R+ DG+L PLP+KH+D GMG
Sbjct: 169 GPCSEIHIDLTPDG-SGGPLVNVGDHRVIELWNLVFIQYDRQADGTLVPLPQKHVDTGMG 227
Query: 385 FERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHAR 444
FER+ +V+Q K SNYD+DVF PLF+ I + TG Y + D+A RV+ADH R
Sbjct: 228 FERVAAVLQGKSSNYDSDVFAPLFDRITELTGT-VYTASLDSPS----DIAMRVIADHCR 282
Query: 445 TLTIALADGGRPDNTGRG 462
TLT AL+DG P N GRG
Sbjct: 283 TLTFALSDGAMPGNEGRG 300
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 77/102 (75%), Gaps = 6/102 (5%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF K+H V S+ VIP++DPTLLF NAGMNQ+K +FLG + RA +TQ
Sbjct: 11 LDFF-AGKEHRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLG-----KGTREYTRAADTQ 64
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
KCIRA GKHNDL+DVG+D YHHTFFEMLGNWSFGDY+K + I
Sbjct: 65 KCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAI 106
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 141/337 (41%), Gaps = 121/337 (35%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L PLP+KH+D GMGFER+ +++Q K SNYD+DVF P R+ E
Sbjct: 214 LVPLPQKHVDTGMGFERVAAVLQGKSSNYDSDVFA----PLFDRITE------------- 256
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
T T+ A P D+A RV+ADH RTLT AL+DG P N G
Sbjct: 257 ----LTGTVYTASLDSPS--------------DIAMRVIADHCRTLTFALSDGAMPGNEG 298
Query: 583 RGYVLRRILRRAVRYGTEKLGAKP---RLFSSLVNTVVDLL------------------- 620
RGYVLRRILRRAVRY +P ++ LV T+ D+
Sbjct: 299 RGYVLRRILRRAVRYAGTLGCHEPIIYKMVEVLVRTMGDVFPELEKQQATVEKIIRAEEE 358
Query: 621 --LLSQGKGATI------------------------EDTIG--LDI-------------- 638
L++ G+G I DT G LD+
Sbjct: 359 SFLVTLGRGTEIFNEVVADMKTAGSTTISGADAFKLYDTFGFPLDLTRLMAAEVGLGIDE 418
Query: 639 ----HSITDLQTRG-------VPPTDDSPKYR-YTPTQPDTADGAYEFEPCEGTVVGLRY 686
H + + +TR + DD +++ + P P T G Y+ E T+V R
Sbjct: 419 AGFEHCMMEQKTRARMDRKGKMQMQDDGGEWQWFAPEAPTTFVG-YDMLETEATLVAARV 477
Query: 687 NKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 723
SG + ++LD++ FYAE GGQ+ D G +
Sbjct: 478 ---------SGDKLLMVLDQTPFYAESGGQVGDHGTL 505
Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 51/66 (77%), Gaps = 5/66 (7%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG + RA +TQKCIRA GKHNDL+DVG+D YHHTFFEMLGNWSFG
Sbjct: 44 QFKDVFLG-----KGTREYTRAADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFG 98
Query: 158 DYFKKQ 163
DY+KK+
Sbjct: 99 DYYKKE 104
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRILRRAVRY LG + +V +V +GD FPEL K ++ II EEE
Sbjct: 301 YVLRRILRRAVRYAG-TLGCHEPIIYKMVEVLVRTMGDVFPELEKQQATVEKIIRAEEES 359
Query: 830 FLKTLSRGRSLLN 842
FL TL RG + N
Sbjct: 360 FLVTLGRGTEIFN 372
Score = 40.0 bits (92), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYF 756
E WAWEL+T V+K+P +RLY T +
Sbjct: 104 EAIGWAWELMTEVWKLPKERLYATVY 129
>sp|A0LXX3|SYA_GRAFK Alanine--tRNA ligase OS=Gramella forsetii (strain KT0803) GN=alaS
PE=3 SV=1
Length = 871
Score = 246 bits (628), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 142/321 (44%), Positives = 187/321 (58%), Gaps = 34/321 (10%)
Query: 156 FGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F ++FK K H V S+ ++ DDPTL+F NAGM Q+K FLG + +AK R +TQ
Sbjct: 10 FLEFFKSKSHTIVPSAPMVLKDDPTLMFTNAGMVQFKEFFLG-----NSVAKSNRVTDTQ 64
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH-- 272
KC+R GKHNDL++VG D YHHT FE+L S D F E + +E++
Sbjct: 65 KCLRVSGKHNDLEEVGHDTYHHTMFEMLGN-----WSFGDYFKEEAISWAWELLTEVYKI 119
Query: 273 -----YDRIGGGRNAADLVNQDDPAYK--ADLLPSKLTRLENQRSMKDNFWEMGETGPCG 325
Y + G + D + D A + ++P + N+ KDNFWEMG+ GPCG
Sbjct: 120 SPENLYVSVFEGSDDRDDLGLDTEALELWKKIVPEERIIYGNK---KDNFWEMGDQGPCG 176
Query: 326 PCSELHYDRIGGGRNAA----DLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDC 381
PCSE+H D A DLVN D P V+EIWNLVF+QYNR+ +G L+ LP KHID
Sbjct: 177 PCSEIHIDIRSEEEKAKTPGRDLVNMDHPQVVEIWNLVFMQYNRKANGDLEELPAKHIDT 236
Query: 382 GMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLAD 441
GMGFERL V+Q+ +SNYDTDVF PL I++ TG G+ ++ I M RV+AD
Sbjct: 237 GMGFERLCMVLQNTQSNYDTDVFTPLVGEIEEITGVT-----YGKSEENNIAM--RVIAD 289
Query: 442 HARTLTIALADGGRPDNTGRG 462
H R + ++ADG P NTG G
Sbjct: 290 HVRAVAFSIADGQLPSNTGAG 310
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 105/199 (52%), Gaps = 42/199 (21%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K FLG + +AK R +TQKC+R GKHNDL++VG D YHHT FEMLGNWSFG
Sbjct: 44 QFKEFFLG-----NSVAKSNRVTDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK++ + + T ++ + N Y +F G+
Sbjct: 99 DYFKEE------AISWAWELLTEVYKISPENLYVSVFEGS-------------------- 132
Query: 218 RAGGKHNDLDDVGKDVYHHTFF-EILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRI 276
+D DD+G D + +I+PE II G+ KDNFWEMG+ GPCGPCSE+H D
Sbjct: 133 ------DDRDDLGLDTEALELWKKIVPEERIIYGNKKDNFWEMGDQGPCGPCSEIHIDIR 186
Query: 277 GGGRNAA----DLVNQDDP 291
A DLVN D P
Sbjct: 187 SEEEKAKTPGRDLVNMDHP 205
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 69/99 (69%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F K K H V S+ ++ DDPTL+F NAGM Q+K FLG + +AK R +TQKC+
Sbjct: 13 FFKSKSHTIVPSAPMVLKDDPTLMFTNAGMVQFKEFFLG-----NSVAKSNRVTDTQKCL 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
R GKHNDL++VG D YHHT FEMLGNWSFGDYFK + I
Sbjct: 68 RVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAI 106
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 144/355 (40%), Gaps = 54/355 (15%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGE------EDKEGID 516
L+ LP KHID GMGFERL ++Q+ +SNYDTDVF P G + E E +
Sbjct: 226 LEELPAKHIDTGMGFERLCMVLQNTQSNYDTDVF----TPLVGEIEEITGVTYGKSEENN 281
Query: 517 MAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHAR---TLTIALA 573
+A RV+ADH R + ++ADG P NTG G + Y + + +
Sbjct: 282 IAMRVIADHVRAVAFSIADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFIYKLVPV 341
Query: 574 DGGRPDNT-----GRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLLSQGKGA 628
G+ T + ++ ++R L L +L+ D +S K
Sbjct: 342 LSGQMGATFQELKSQQNLIENVIREEEASFLRTLDQGLILLENLMKESKD-KTISGEKAF 400
Query: 629 TIEDTIG--LDIHSIT------DLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPC-EG 679
+ DT G +D+ ++ DL +G K R +A E P E
Sbjct: 401 ELYDTFGFPIDLTALILKENGYDLDEKGFEAELKKQKDRSREATAVSAGDWIELNPVDEE 460
Query: 680 TVVGL----------RYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDE 729
+ VG RY K V+S G ++L+K+ FY E GGQ+ D+G ++ + E
Sbjct: 461 SFVGYDKLEADAKIARYRK--VESKKKGEMFQVVLNKTPFYPEGGGQVGDKGILMSSDGE 518
Query: 730 LEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGT 784
+ V + + +F + P E + + I+ + RY T
Sbjct: 519 ----------VVDVVDTKKENNQIIHFTKNLPKNTEAE----FKAIVNKTERYNT 559
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGG---HEPAGLEPDLDYVLRRIL-RRAVRYGTEK 786
E +WAWELLT VYKI + LYV+ F G + GL+ + + ++I+ + YG +K
Sbjct: 104 EAISWAWELLTEVYKISPENLYVSVFEGSDDRDDLGLDTEALELWKKIVPEERIIYGNKK 163
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 41/72 (56%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YV+RRILRRA+RYG L K LV + +G TF EL I ++I EEE
Sbjct: 311 YVIRRILRRAIRYGFTFLNTKEPFIYKLVPVLSGQMGATFQELKSQQNLIENVIREEEAS 370
Query: 830 FLKTLSRGRSLL 841
FL+TL +G LL
Sbjct: 371 FLRTLDQGLILL 382
>sp|A5FIP9|SYA_FLAJ1 Alanine--tRNA ligase OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=alaS PE=3 SV=1
Length = 879
Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/317 (43%), Positives = 179/317 (56%), Gaps = 18/317 (5%)
Query: 156 FGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F D+F+ K H V S+ ++ DDPTL+F N+GM Q+K FLG P S R +TQ
Sbjct: 10 FLDFFESKGHTIVPSAPIVLKDDPTLMFNNSGMAQFKEFFLGNGTPKSP-----RIADTQ 64
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSEL 271
KC+R GKHNDL++VG D YHHT FE+L K+ WE+ P L
Sbjct: 65 KCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKIPKENL 124
Query: 272 HYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELH 331
+ G + +Q+ L+ L N+ KDNFWEMG+ GPCGPCSE+H
Sbjct: 125 YVSVFEGSKEDNVPFDQEAWDIWKTLIDEDRIILGNK---KDNFWEMGDQGPCGPCSEIH 181
Query: 332 YDRIGGGRNA----ADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFER 387
D A LVN D P V+EIWN VF+++NR+ DGSL+ LP +H+D GMGFER
Sbjct: 182 VDLRSAEEKALVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMGFER 241
Query: 388 LVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVG--EEDKEGIDMAYRVLADHART 445
L +Q K SNYDTDVF+PL I+ TGA V E++ +++A RV+ADH R
Sbjct: 242 LCMALQGKTSNYDTDVFMPLIREIETITGAKYTTNDVTGISEEQNKMNIAIRVVADHVRA 301
Query: 446 LTIALADGGRPDNTGRG 462
+ A+ADG P NTG G
Sbjct: 302 VAFAIADGQLPSNTGAG 318
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 97/198 (48%), Gaps = 41/198 (20%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K FLG P S R +TQKC+R GKHNDL++VG D YHHT FEMLGNWSFG
Sbjct: 44 QFKEFFLGNGTPKSP-----RIADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFKK+ + + T ++ N Y +F G+ + N
Sbjct: 99 DYFKKE------AINWAWELLTEVYKIPKENLYVSVFEGSKEDNV--------------- 137
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIG 277
D D++ ++ E II G+ KDNFWEMG+ GPCGPCSE+H D
Sbjct: 138 -------PFDQEAWDIWK----TLIDEDRIILGNKKDNFWEMGDQGPCGPCSEIHVDLRS 186
Query: 278 GGRNA----ADLVNQDDP 291
A LVN D P
Sbjct: 187 AEEKALVSGKSLVNNDHP 204
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 70/102 (68%), Gaps = 6/102 (5%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF + K H V S+ ++ DDPTL+F N+GM Q+K FLG P S R +TQ
Sbjct: 11 LDFF-ESKGHTIVPSAPIVLKDDPTLMFNNSGMAQFKEFFLGNGTPKSP-----RIADTQ 64
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
KC+R GKHNDL++VG D YHHT FEMLGNWSFGDYFK + I
Sbjct: 65 KCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAI 106
Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 83/158 (52%), Gaps = 28/158 (17%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L+ LP +H+D GMGFERL +Q K SNYDTDVF P L
Sbjct: 225 LEKLPAQHVDTGMGFERLCMALQGKTSNYDTDVF---MP--------------------L 261
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
T+T A N G+ EE + +++A RV+ADH R + A+ADG P NTG
Sbjct: 262 IREIETITGA----KYTTNDVTGISEEQNK-MNIAIRVVADHVRAVAFAIADGQLPSNTG 316
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
GYV+RRILRRA+RYG LG K LV T+ + +
Sbjct: 317 AGYVIRRILRRAIRYGFTFLGTKEPFIYKLVETLSEQM 354
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YV+RRILRRA+RYG LG K LV T+ + +GD+FPE+ ++I EEE
Sbjct: 319 YVIRRILRRAIRYGFTFLGTKEPFIYKLVETLSEQMGDSFPEIRTQKALCSNVIREEENS 378
Query: 830 FLKTLSRGRSLLN 842
FLKTL +G LL+
Sbjct: 379 FLKTLDQGLILLD 391
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGG 758
E WAWELLT VYKIP + LYV+ F G
Sbjct: 104 EAINWAWELLTEVYKIPKENLYVSVFEG 131
>sp|Q8A0M6|SYA_BACTN Alanine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=alaS
PE=3 SV=1
Length = 872
Score = 243 bits (621), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 148/340 (43%), Positives = 192/340 (56%), Gaps = 39/340 (11%)
Query: 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
SF ++F+ K H V S+ ++ DDPTL+F NAGMNQ+K I LG + AK R ++
Sbjct: 10 SFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILG-----NHPAKYHRVADS 64
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF--------WE-MGETGP 264
QKC+R GKHNDL++VG D YHHT FE+L S D F WE + E
Sbjct: 65 QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGN-----WSFGDYFKKEAINWAWEYLVEVLK 119
Query: 265 CGPCSELHYDRIGGGRNAADLVNQDDPA-YKADLLPSKLTRLENQRSMKDNFWEMGETGP 323
P E Y + G L D+ A Y LP N+ DNFWEMG+TGP
Sbjct: 120 LNP--EHLYATVFEGSPEEGLSRDDEAASYWEQYLPKDHIINGNKH---DNFWEMGDTGP 174
Query: 324 CGPCSELHYDRIGGGRNAA----DLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHI 379
CGPCSE+H D A DLVN D P V+EIWNLVF+QYNR+ DGSL+PLP K I
Sbjct: 175 CGPCSEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVI 234
Query: 380 DCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVL 439
D GMGFERL +Q K SNYDTDVF P+ +AI +G G++ ++ D+A RV+
Sbjct: 235 DTGMGFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGT-----EYGKDKQQ--DIAMRVI 287
Query: 440 ADHARTLTIALADGGRPDNTGRG--LKPLPKKHIDCGMGF 477
ADH RT+ ++ DG P N G ++ + ++ + G F
Sbjct: 288 ADHIRTIAFSITDGQLPSNAKAGYVIRRILRRAVRYGYTF 327
Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 104/200 (52%), Gaps = 45/200 (22%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K I LG + AK R ++QKC+R GKHNDL++VG D YHHT FEMLGNWSFG
Sbjct: 45 QFKDIILG-----NHPAKYHRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFG 99
Query: 158 DYFKKQH-DYVHSSCV-IPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQK 215
DYFKK+ ++ V + +P L+A +F G+ P +++
Sbjct: 100 DYFKKEAINWAWEYLVEVLKLNPEHLYAT--------VFEGS--PEEGLSR--------- 140
Query: 216 CIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDR 275
DD + + LP+ HII G+ DNFWEMG+TGPCGPCSE+H D
Sbjct: 141 -----------DDEAASYWE----QYLPKDHIINGNKHDNFWEMGDTGPCGPCSEIHIDL 185
Query: 276 IGGGRNAA----DLVNQDDP 291
A DLVN D P
Sbjct: 186 RPAEERAKISGRDLVNHDHP 205
Score = 120 bits (300), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 69/99 (69%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + K H V S+ ++ DDPTL+F NAGMNQ+K I LG + AK R ++QKC+
Sbjct: 14 FFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILG-----NHPAKYHRVADSQKCL 68
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
R GKHNDL++VG D YHHT FEMLGNWSFGDYFK + I
Sbjct: 69 RVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAI 107
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 72/159 (45%), Gaps = 43/159 (27%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEE---DKEGIDMAY 519
L+PLP K ID GMGFERL +Q K SNYDTDVF G E DK+ D+A
Sbjct: 226 LEPLPAKVIDTGMGFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQ-DIAM 284
Query: 520 RVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPD 579
RV+ADH RT+ ++ DG P
Sbjct: 285 RVIADHIRTIAFSITDGQLP---------------------------------------S 305
Query: 580 NTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD 618
N GYV+RRILRRAVRYG LG K L+ ++D
Sbjct: 306 NAKAGYVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLID 344
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YV+RRILRRAVRYG LG K L+ ++D +GD +PEL I +I EEEE
Sbjct: 311 YVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLIDNMGDAYPELIAQKGLIEKVIKEEEEA 370
Query: 830 FLKTLSRGRSLLNR 843
FL+TL G LL++
Sbjct: 371 FLRTLETGIRLLDK 384
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPD 767
E WAWE L V K+ + LY T F G GL D
Sbjct: 105 EAINWAWEYLVEVLKLNPEHLYATVFEGSPEEGLSRD 141
>sp|Q7MV54|SYA_PORGI Alanine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=alaS PE=3 SV=1
Length = 876
Score = 243 bits (621), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 162/411 (39%), Positives = 212/411 (51%), Gaps = 48/411 (11%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
SF +F K H V S+ ++ DPTL+F NAGMNQ+K I LG + AK R ++
Sbjct: 10 SFKTFFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTE-----AKYTRVADS 64
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF--------WEMGETGPC 265
QKC+R GKHNDL++VG D YHHT FE+L S D F WE T
Sbjct: 65 QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGN-----WSFGDYFKKEAIEWAWEYLVT-VL 118
Query: 266 GPCSELHYDRIGGGRNAADLVNQDDPA--YKADLLPSKLTRLENQRSMKDNFWEMGETGP 323
G + Y + G N + +++D+ A Y A LP + R+ N DNFWEMG+TGP
Sbjct: 119 GLDPQRLYATVFEG-NPEEGLDRDNEAASYWAQFLPEE--RIINGNK-HDNFWEMGDTGP 174
Query: 324 CGPCSELHYD-RIGGGR---NAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHI 379
CGPCSE+H D R R N +L+N+ P V+EIWNLVF+QYNR+ D SL PLP K I
Sbjct: 175 CGPCSEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADASLTPLPHKVI 234
Query: 380 DCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVL 439
D GMGFERL +Q K SNYDTDVF PL + TG +G + D+A RV+
Sbjct: 235 DTGMGFERLCMALQGKTSNYDTDVFQPLIRTLATMTG-------IGYGEDSTSDIAMRVV 287
Query: 440 ADHARTLTIALADGGRPDNTGRG--LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFG 497
ADH RT+ A+ DG P N G ++ + ++ + G F + D G
Sbjct: 288 ADHIRTIAFAITDGQLPSNAKAGYVIRRILRRAVRYGYTFLHCREAFMYRLLPTLIDTMG 347
Query: 498 TGAPPYQG------RVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNT 542
P Q RV +E++E R L R L +AD +T
Sbjct: 348 DAYPELQAQRELISRVIKEEEESF---LRTLETGIRLLEKKIADNKATGST 395
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 104/200 (52%), Gaps = 45/200 (22%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K I LG + AK R ++QKC+R GKHNDL++VG D YHHT FEMLGNWSFG
Sbjct: 45 QFKDIILGNTE-----AKYTRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFG 99
Query: 158 DYFKKQH-DYVHSSCV-IPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQK 215
DYFKK+ ++ V + DP L+A +F G +P +
Sbjct: 100 DYFKKEAIEWAWEYLVTVLGLDPQRLYAT--------VFEG--NPEEGL----------- 138
Query: 216 CIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYD- 274
D D+ + + LPE II G+ DNFWEMG+TGPCGPCSE+H D
Sbjct: 139 ---------DRDNEAASYWA----QFLPEERIINGNKHDNFWEMGDTGPCGPCSEIHIDL 185
Query: 275 RIGGGR---NAADLVNQDDP 291
R R N +L+N+ P
Sbjct: 186 RSDEERAQINGLELINKSHP 205
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 67/99 (67%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F K H V S+ ++ DPTL+F NAGMNQ+K I LG + AK R ++QKC+
Sbjct: 14 FFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTE-----AKYTRVADSQKCL 68
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
R GKHNDL++VG D YHHT FEMLGNWSFGDYFK + I
Sbjct: 69 RVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAI 107
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 77/158 (48%), Gaps = 37/158 (23%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L PLP K ID GMGFERL +Q K SNYDTDVF P
Sbjct: 226 LTPLPHKVIDTGMGFERLCMALQGKTSNYDTDVF----QPL------------------- 262
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
RTL TG G GE+ D+A RV+ADH RT+ A+ DG P N
Sbjct: 263 ---IRTLATM---------TGIGYGEDSTS--DIAMRVVADHIRTIAFAITDGQLPSNAK 308
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
GYV+RRILRRAVRYG L + L+ T++D +
Sbjct: 309 AGYVIRRILRRAVRYGYTFLHCREAFMYRLLPTLIDTM 346
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YV+RRILRRAVRYG L + L+ T++D +GD +PEL + I +I EEEE
Sbjct: 311 YVIRRILRRAVRYGYTFLHCREAFMYRLLPTLIDTMGDAYPELQAQRELISRVIKEEEES 370
Query: 830 FLKTLSRGRSLLNRN 844
FL+TL G LL +
Sbjct: 371 FLRTLETGIRLLEKK 385
Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPD 767
E WAWE L TV + RLY T F G+ GL+ D
Sbjct: 105 EAIEWAWEYLVTVLGLDPQRLYATVFEGNPEEGLDRD 141
>sp|A6LEZ8|SYA_PARD8 Alanine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC
8503 / DSM 20701 / NCTC 11152) GN=alaS PE=3 SV=1
Length = 873
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 150/340 (44%), Positives = 193/340 (56%), Gaps = 39/340 (11%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
SF +F K+H V S+ ++ DPTL+F NAGMNQ+K I LG V P K R ++
Sbjct: 10 SFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNV-PR----KYPRVADS 64
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF--------WE-MGETGP 264
QKC+R GKHNDL++VG D YHHT FE+L S D F WE + E
Sbjct: 65 QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGN-----WSFGDYFKKEAINWAWEYLVEVLK 119
Query: 265 CGPCSELHYDRIGGGRNAADLVNQDDPA-YKADLLPSKLTRLENQRSMKDNFWEMGETGP 323
P E Y + G A L ++ A Y LP N+ DNFWEMG+TGP
Sbjct: 120 LNP--ERLYATVFEGSPAEGLDRDNEAAGYWEQYLPKDHILNGNKH---DNFWEMGDTGP 174
Query: 324 CGPCSELHYD-RIGGGRNA---ADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHI 379
CGPCSE+H D R R A AD+VN+D P V+EIWNLVF+Q+NR+ DGSL+PLP K I
Sbjct: 175 CGPCSEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVI 234
Query: 380 DCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVL 439
D GMGFERL +Q K SNYDTDVF P+ + I G Y G + ++ D+A RV+
Sbjct: 235 DTGMGFERLCMALQGKTSNYDTDVFQPIIKVI-AGMAGTTY----GTDKQQ--DIAMRVI 287
Query: 440 ADHARTLTIALADGGRPDNTGRG--LKPLPKKHIDCGMGF 477
ADH RT+ A+ DG P N G ++ + ++ + G F
Sbjct: 288 ADHIRTIAFAITDGQLPSNAKAGYVIRRILRRAVRYGYTF 327
Score = 129 bits (325), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 107/200 (53%), Gaps = 45/200 (22%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K I LG V P K R ++QKC+R GKHNDL++VG D YHHT FEMLGNWSFG
Sbjct: 45 QFKDIILGNV-PR----KYPRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFG 99
Query: 158 DYFKKQH-DYVHSSCV-IPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQK 215
DYFKK+ ++ V + +P L+A +F G+
Sbjct: 100 DYFKKEAINWAWEYLVEVLKLNPERLYAT--------VFEGS------------------ 133
Query: 216 CIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYD- 274
A G D + G Y + LP+ HI+ G+ DNFWEMG+TGPCGPCSE+H D
Sbjct: 134 --PAEGLDRDNEAAG---YWEQY---LPKDHILNGNKHDNFWEMGDTGPCGPCSEIHIDL 185
Query: 275 RIGGGRNA---ADLVNQDDP 291
R R A AD+VN+D P
Sbjct: 186 RSDEERAAVSGADMVNKDHP 205
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F K+H V S+ ++ DPTL+F NAGMNQ+K I LG V P K R ++QKC+
Sbjct: 14 FFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNV-PR----KYPRVADSQKCL 68
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
R GKHNDL++VG D YHHT FEMLGNWSFGDYFK + I
Sbjct: 69 RVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAI 107
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 77/158 (48%), Gaps = 37/158 (23%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L+PLP K ID GMGFERL +Q K SNYDTDVF +V+
Sbjct: 226 LEPLPAKVIDTGMGFERLCMALQGKTSNYDTDVFQP-------------------IIKVI 266
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
A A G G + ++ D+A RV+ADH RT+ A+ DG P N
Sbjct: 267 AGMA----------------GTTYGTDKQQ--DIAMRVIADHIRTIAFAITDGQLPSNAK 308
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
GYV+RRILRRAVRYG L K L+ +++ +
Sbjct: 309 AGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETM 346
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YV+RRILRRAVRYG L K L+ +++ +GD +PEL I +I EEEE
Sbjct: 311 YVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKTLIEKVIKEEEES 370
Query: 830 FLKTLSRGRSLLNR 843
FL+TL G LL++
Sbjct: 371 FLRTLETGIRLLDK 384
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPD 767
E WAWE L V K+ +RLY T F G GL+ D
Sbjct: 105 EAINWAWEYLVEVLKLNPERLYATVFEGSPAEGLDRD 141
Score = 37.7 bits (86), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 672 YEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELE 731
Y+ CE ++ R KQ + I+LD++ FYAE GGQ+ D G++I +++++
Sbjct: 467 YDLFECEAEILRYRQIKQ-----KNKVLYQIVLDQTPFYAEMGGQVGDTGWLIADDEKID 521
Query: 732 V 732
V
Sbjct: 522 V 522
>sp|Q1IJG7|SYA_KORVE Alanine--tRNA ligase OS=Koribacter versatilis (strain Ellin345)
GN=alaS PE=3 SV=1
Length = 1098
Score = 240 bits (612), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 179/472 (37%), Positives = 242/472 (51%), Gaps = 58/472 (12%)
Query: 156 FGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F D+F K H VHSS ++P++DPTLLF NAGMNQ+K +FLG + + RA +Q
Sbjct: 24 FLDFFISKGHKEVHSSSLVPANDPTLLFTNAGMNQFKDVFLGVEKRDYN-----RATTSQ 78
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGP--CGPCS 269
KC+RAGGKHNDL++VG HHTFFE+L KD WE+ T P G
Sbjct: 79 KCVRAGGKHNDLENVGFTNRHHTFFEMLGNFSFGDYFKKDAIAYAWEL-VTSPDWYGMQQ 137
Query: 270 ELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSE 329
+ Y I G N V +DD AY+ L + MKDNFW MG+TGPCGPCSE
Sbjct: 138 DKLYATIFKGENG---VPRDDEAYQLWLDVGVPKERVFEMGMKDNFWAMGDTGPCGPCSE 194
Query: 330 LHYDRIGGGRNAADLVNQDDPD-----------VLEIWNLVFIQYNRETDGSLKPLPKKH 378
LHYD G ++D N + +EIWNLVF+Q++R+ G+L PLPK
Sbjct: 195 LHYDM---GVASSDKKNPECAAGECKFPCECGRYVEIWNLVFMQFDRDASGTLNPLPKPS 251
Query: 379 IDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRV 438
ID G G ER+ +V+Q SNYDTD+F PL + + T + E + + RV
Sbjct: 252 IDTGAGLERVTAVMQGVVSNYDTDLFTPLIKRAAELTDVDEKREEAKESQSKSA-ASLRV 310
Query: 439 LADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDT----- 493
+ADH+R T ++DG P N GRG + +K I G+ RL+ Q+K +D
Sbjct: 311 IADHSRAATFLISDGVIPANEGRGY--VLRKIIRRGIRHGRLLG--QNKPFLHDMVYAVR 366
Query: 494 DVFGTGAPPYQGRVGEEDKEGID-MAYRVLADHAR---TLTIALA----DGGRPDNTGRG 545
D+ P E KE D +A VLA+ R TL I L D T R
Sbjct: 367 DLMQDAYP--------ELKETADRVAKTVLAEETRFANTLDIGLKKLDEDLASLAETTRE 418
Query: 546 VGE---EDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRA 594
+G E+ + ++ A + +A H + L+ G D G G++LRR + RA
Sbjct: 419 LGRLSWEEPKPVEFALKEVARHVFVVAQMLSPGMTFDTPGHGFLLRRGIYRA 470
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 75/102 (73%), Gaps = 6/102 (5%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF+ K H VHSS ++P++DPTLLF NAGMNQ+K +FLG + + RA +Q
Sbjct: 25 LDFFISKG-HKEVHSSSLVPANDPTLLFTNAGMNQFKDVFLGVEKRDYN-----RATTSQ 78
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
KC+RAGGKHNDL++VG HHTFFEMLGN+SFGDYFK I
Sbjct: 79 KCVRAGGKHNDLENVGFTNRHHTFFEMLGNFSFGDYFKKDAI 120
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 75/158 (47%), Gaps = 32/158 (20%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L PLPK ID G G ER+ +++Q SNYDTD+F P R E L
Sbjct: 244 LNPLPKPSIDTGAGLERVTAVMQGVVSNYDTDLF----TPLIKRAAE------------L 287
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
D D R + +E + + RV+ADH+R T ++DG P N G
Sbjct: 288 TD---------VDEKREE------AKESQSKSAASLRVIADHSRAATFLISDGVIPANEG 332
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLR+I+RR +R+G LG +V V DL+
Sbjct: 333 RGYVLRKIIRRGIRHG-RLLGQNKPFLHDMVYAVRDLM 369
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLR+I+RR +R+G LG +V V DL+ D +PEL + + + EE +
Sbjct: 335 YVLRKIIRRGIRHG-RLLGQNKPFLHDMVYAVRDLMQDAYPELKETADRVAKTVLAEETR 393
Query: 830 FLKTLSRGRSLLNRNESHLAQC 851
F TL G L+ + + LA+
Sbjct: 394 FANTLDIGLKKLDEDLASLAET 415
Score = 34.3 bits (77), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 679 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 723
TV+ + N V ++ G A ++LD + FY+E GGQI D G++
Sbjct: 680 ATVLAIISNGASVAQLAPGDVAEMVLDYTPFYSESGGQIGDTGWL 724
>sp|A6H0Y3|SYA_FLAPJ Alanine--tRNA ligase OS=Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511) GN=alaS PE=3 SV=1
Length = 887
Score = 237 bits (604), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/315 (42%), Positives = 172/315 (54%), Gaps = 27/315 (8%)
Query: 162 KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGG 221
K H V S+ ++ DDPTL+F N+GM Q+K FLG P S R +TQKC+R G
Sbjct: 17 KGHLIVPSAPIVLKDDPTLMFNNSGMAQFKEYFLGNGTPKSP-----RIADTQKCLRVSG 71
Query: 222 KHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF--------WEMGETGPCGPCSELHY 273
KHNDL+DVG D YHHT FE+L S D F WE+ P L+
Sbjct: 72 KHNDLEDVGFDTYHHTMFEMLGN-----WSFGDYFKKEAINWAWELLTEVYKIPKQNLYV 126
Query: 274 DRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHYD 333
G + +Q+ L+ L N+ KDNFWEMG+ GPCGPCSE+H D
Sbjct: 127 SVFEGSKEDNVPFDQEAWDIWKGLIDEDRIILGNK---KDNFWEMGDQGPCGPCSEIHVD 183
Query: 334 RIGGGRNAA----DLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLV 389
A LVN D P V+EIWN VF+++NR+ DGSL+ LP +H+D GMGFERL
Sbjct: 184 LRTPEEKAQVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243
Query: 390 SVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVG--EEDKEGIDMAYRVLADHARTLT 447
+Q K SNYDTDVF PL E + + TG V E++ ++A RV+ DH R +
Sbjct: 244 MALQGKTSNYDTDVFTPLIEKVTQITGYKYTSNEVKNISEEQNKTNIAIRVIVDHVRAVA 303
Query: 448 IALADGGRPDNTGRG 462
A+ADG P NTG G
Sbjct: 304 FAIADGQLPSNTGAG 318
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 97/198 (48%), Gaps = 41/198 (20%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K FLG P S R +TQKC+R GKHNDL+DVG D YHHT FEMLGNWSFG
Sbjct: 44 QFKEYFLGNGTPKSP-----RIADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFKK+ + + T ++ N Y +F G+ + N
Sbjct: 99 DYFKKE------AINWAWELLTEVYKIPKQNLYVSVFEGSKEDNV--------------- 137
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIG 277
D D++ ++ E II G+ KDNFWEMG+ GPCGPCSE+H D
Sbjct: 138 -------PFDQEAWDIWKG----LIDEDRIILGNKKDNFWEMGDQGPCGPCSEIHVDLRT 186
Query: 278 GGRNA----ADLVNQDDP 291
A LVN D P
Sbjct: 187 PEEKAQVSGKSLVNNDHP 204
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 67/99 (67%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + K H V S+ ++ DDPTL+F N+GM Q+K FLG P S R +TQKC+
Sbjct: 13 FFESKGHLIVPSAPIVLKDDPTLMFNNSGMAQFKEYFLGNGTPKSP-----RIADTQKCL 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
R GKHNDL+DVG D YHHT FEMLGNWSFGDYFK + I
Sbjct: 68 RVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAI 106
Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 79/151 (52%), Gaps = 28/151 (18%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L+ LP +H+D GMGFERL +Q K SNYDTDVF P +V + Y+
Sbjct: 225 LEKLPAQHVDTGMGFERLCMALQGKTSNYDTDVF----TPLIEKVTQ------ITGYKYT 274
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
++ + ++ E++ ++A RV+ DH R + A+ADG P NTG
Sbjct: 275 SNEVKNIS------------------EEQNKTNIAIRVIVDHVRAVAFAIADGQLPSNTG 316
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLV 613
GYV+RRILRRA+RYG L K + LV
Sbjct: 317 AGYVIRRILRRAIRYGFTFLDTKEPFITKLV 347
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YV+RRILRRA+RYG L K + LV + +G+ FPE+ Q + ++I EEE
Sbjct: 319 YVIRRILRRAIRYGFTFLDTKEPFITKLVAVLASQMGEFFPEIKSQQQLVTNVIREEEAS 378
Query: 830 FLKTLSRGRSLLNR 843
FL+TL +G LL++
Sbjct: 379 FLRTLEQGLQLLDK 392
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 19/28 (67%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGG 758
E WAWELLT VYKIP LYV+ F G
Sbjct: 104 EAINWAWELLTEVYKIPKQNLYVSVFEG 131
Score = 33.1 bits (74), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 691 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVND 728
V+S G I+LD + FY E GGQ+ D+G ++ ND
Sbjct: 488 VNSKKDGILYQIVLDNTPFYPEGGGQVGDKGTLVSAND 525
>sp|Q0AZQ1|SYA_SYNWW Alanine--tRNA ligase OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=alaS PE=3 SV=1
Length = 880
Score = 236 bits (601), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 140/319 (43%), Positives = 183/319 (57%), Gaps = 37/319 (11%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F +YF+++ H V SS ++P +DPTLLF NAGMNQ+K +FLG D K VRA ++
Sbjct: 10 TFLEYFEERGHSVVESSSLVPVNDPTLLFTNAGMNQFKDVFLGL-----DKRKYVRATSS 64
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
QKC+RAGGKHNDLD VG+ HHTFFE+L S D F + G E
Sbjct: 65 QKCVRAGGKHNDLDTVGRTPRHHTFFEMLGNF-----SFGDYF----KREAIGYAWEFLT 115
Query: 274 DRIGGGRNAADLVNQDDPAYKADLLPS-------KLTRLENQRSMKDNFWEMGETGPCGP 326
+ +G + D ADL P ++ RL KDNFW MG+TGPCGP
Sbjct: 116 EVVGLPEEKLWVTIYQDDDEAADLWPEISGIDPGRIVRL----GEKDNFWSMGDTGPCGP 171
Query: 327 CSELHYDR-IGGGRNAADL-VNQDDPD-VLEIWNLVFIQYNRETDGSLKPLPKKHIDCGM 383
CSE+ YDR I A D + D D LEIWNLVF+Q+NR+ G + PLP+ ID GM
Sbjct: 172 CSEILYDRGIEYSCGAPDCGIGVCDCDRWLEIWNLVFMQFNRDESGEMTPLPRPSIDTGM 231
Query: 384 GFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHA 443
G ERL S++Q SN+DTD+F+P+ + I++ TG QG G +RV+ADH+
Sbjct: 232 GLERLSSILQGVDSNFDTDLFIPIIKRIEELTGKAYEQGERG--------FPFRVIADHS 283
Query: 444 RTLTIALADGGRPDNTGRG 462
R + +ADG P N GRG
Sbjct: 284 RACSFLIADGVLPSNDGRG 302
Score = 129 bits (325), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 74/99 (74%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
+ +++ H V SS ++P +DPTLLF NAGMNQ+K +FLG D K VRA ++QKC+
Sbjct: 14 YFEERGHSVVESSSLVPVNDPTLLFTNAGMNQFKDVFLGL-----DKRKYVRATSSQKCV 68
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
RAGGKHNDLD VG+ HHTFFEMLGN+SFGDYFK + I
Sbjct: 69 RAGGKHNDLDTVGRTPRHHTFFEMLGNFSFGDYFKREAI 107
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 92/183 (50%), Gaps = 53/183 (28%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D K VRA ++QKC+RAGGKHNDLD VG+ HHTFFEMLGN+SFG
Sbjct: 45 QFKDVFLGL-----DKRKYVRATSSQKCVRAGGKHNDLDTVGRTPRHHTFFEMLGNFSFG 99
Query: 158 DYFKKQH-----DYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
DYFK++ +++ +P + L+ + D +D+ + ++
Sbjct: 100 DYFKREAIGYAWEFLTEVVGLPEEK---LWVTIYQDD---------DEAADLWPEISGID 147
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH 272
+ +R G KDNFW MG+TGPCGPCSE+
Sbjct: 148 PGRIVRLG-------------------------------EKDNFWSMGDTGPCGPCSEIL 176
Query: 273 YDR 275
YDR
Sbjct: 177 YDR 179
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 457 DNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVF---GTGAPPYQGRVGEEDKE 513
D +G + PLP+ ID GMG ERL SI+Q SN+DTD+F G+ E+ +
Sbjct: 214 DESGE-MTPLPRPSIDTGMGLERLSSILQGVDSNFDTDLFIPIIKRIEELTGKAYEQGER 272
Query: 514 GIDMAYRVLADHARTLTIALADGGRPDNTGRG 545
G +RV+ADH+R + +ADG P N GRG
Sbjct: 273 G--FPFRVIADHSRACSFLIADGVLPSNDGRG 302
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 787 LGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRG 837
LG + V+ V D++ + +PEL + I ++I EEE+FL TL+ G
Sbjct: 319 LGIEGSFLYKNVDVVCDIMQEAYPELLEKQDFIKEVIRLEEERFLLTLNDG 369
Score = 33.1 bits (74), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 672 YEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIG------ 725
YE E ++ + + +D +G E ++ ++ FYAE GGQ+ D G + G
Sbjct: 465 YENSRDESVLLAIIKGSELMDKALNGEEVILITARTPFYAESGGQVADCGIIKGQEGLLR 524
Query: 726 VNDELEVCTW 735
V D ++ W
Sbjct: 525 VQDVKKLSAW 534
>sp|B1ZZ40|SYA_OPITP Alanine--tRNA ligase OS=Opitutus terrae (strain DSM 11246 / PB90-1)
GN=alaS PE=3 SV=1
Length = 937
Score = 234 bits (598), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 166/429 (38%), Positives = 215/429 (50%), Gaps = 58/429 (13%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDM------AKL 207
SF D+F +Q H V SS ++P D P LLF NAGMNQ+ PIFLG P+ AK
Sbjct: 9 SFLDFFARQGHTIVPSSSLLP-DSPGLLFTNAGMNQFVPIFLGDRAPDVSKWAGARPAKD 67
Query: 208 VRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGP 264
RA +TQKCIRAGGKHNDL+DVG D YHHT FE+L K++ WE+
Sbjct: 68 TRAADTQKCIRAGGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKESITWGWELITKVW 127
Query: 265 CGPCSELHYDRIGGGRNAADLVNQDDPAY--------KADLLPSKLTRLENQRSMKDNFW 316
P L ++ D + D AY K L P+ N+ KDNFW
Sbjct: 128 GIPAKRLFATVYSPDKSKNDPSDFDQEAYDIWAGVFKKEGLDPAVHIVHGNK---KDNFW 184
Query: 317 EMGETGPCGPCSELHYDRIGG-----GRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSL 371
MG+TGPCGPCSE+H++ + GR LVN P +EIWN VFIQ+N DG+
Sbjct: 185 MMGDTGPCGPCSEIHFNLLPSDDEVEGRK---LVNAGVPRCIEIWNHVFIQFNANADGTF 241
Query: 372 KPLPKKHIDCGMGFERLVSVIQDKR---------SNYDTDVFVPLFEAIQKGTGAPPYQG 422
PL KH+D GMGFER+ + + SNY+ DVF PLF I++ Y G
Sbjct: 242 SPLAAKHVDTGMGFERVAGIYATTKGFKDFSRDPSNYNADVFAPLFAKIEE-LSKKTYNG 300
Query: 423 RV-----GEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGF 477
V G ++E ID+A+RVLADHAR ++ A+AD P N GR + ++ + G
Sbjct: 301 TVPTRREGLGEQENIDIAFRVLADHARCVSCAIADNILPGNEGRNY--VIRRILRRG--- 355
Query: 478 ERLVSIIQDKRSNYDTDVFGTGAPPY---QGRVGEEDKEGIDMAYRVLADHARTLTIALA 534
I+ K+ N T F P G V E KE D+ RV+ + L
Sbjct: 356 -----ILYGKKLNLATGFFEQLVAPVVESLGAVFPELKERQDIIRRVIRSEEESFGRTLE 410
Query: 535 DGGRPDNTG 543
G + N G
Sbjct: 411 KGLQLFNEG 419
Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 77/111 (69%), Gaps = 8/111 (7%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDM------AKLV 54
+DFF ++ H V SS ++P D P LLF NAGMNQ+ PIFLG P+ AK
Sbjct: 11 LDFFARQG-HTIVPSSSLLP-DSPGLLFTNAGMNQFVPIFLGDRAPDVSKWAGARPAKDT 68
Query: 55 RAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
RA +TQKCIRAGGKHNDL+DVG D YHHT FEMLGNWSFGDYFK + I G
Sbjct: 69 RAADTQKCIRAGGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKESITWG 119
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 36/167 (21%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKR---------SNYDTDVFGTGAPPYQGRVGEEDKE 513
PL KH+D GMGFER+ I + SNY+ DVF P ++ E K+
Sbjct: 241 FSPLAAKHVDTGMGFERVAGIYATTKGFKDFSRDPSNYNADVFA----PLFAKIEELSKK 296
Query: 514 GIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALA 573
+ G G+GE+ E ID+A+RVLADHAR ++ A+A
Sbjct: 297 TYN--------------------GTVPTRREGLGEQ--ENIDIAFRVLADHARCVSCAIA 334
Query: 574 DGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
D P N GR YV+RRILRR + YG +KL F LV VV+ L
Sbjct: 335 DNILPGNEGRNYVIRRILRRGILYG-KKLNLATGFFEQLVAPVVESL 380
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 769 DYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEE 828
+YV+RRILRR + YG +KL F LV VV+ LG FPEL + I +I EEE
Sbjct: 345 NYVIRRILRRGILYG-KKLNLATGFFEQLVAPVVESLGAVFPELKERQDIIRRVIRSEEE 403
Query: 829 QFLKTLSRGRSLLNRNESHL 848
F +TL +G L N L
Sbjct: 404 SFGRTLEKGLQLFNEGAKLL 423
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYF 756
E TW WEL+T V+ IPA RL+ T +
Sbjct: 114 ESITWGWELITKVWGIPAKRLFATVY 139
>sp|A8ZY67|SYA_DESOH Alanine--tRNA ligase OS=Desulfococcus oleovorans (strain DSM 6200 /
Hxd3) GN=alaS PE=3 SV=1
Length = 876
Score = 227 bits (579), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 183/332 (55%), Gaps = 50/332 (15%)
Query: 150 MLGNW---SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMA 205
M GN +F DYF+ Q H V SS ++P DPTLLF NAGM Q+K +F+G +
Sbjct: 1 MTGNEARKTFLDYFENQGHRVVRSSSLVPQADPTLLFVNAGMVQFKRVFMG-----EEKR 55
Query: 206 KLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPC 265
A +QKC+RAGGKHNDL++VG HHTFFE+L S D F E
Sbjct: 56 DYTTATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNF-----SFGDYFKER------ 104
Query: 266 GPCSELHYDRIGGG------RNAADLVNQDDPAY-----KADLLPSKLTRLENQRSMKDN 314
EL +D + G + + + ++DD A+ + L S++ RL KDN
Sbjct: 105 --AIELAWDLLLNGYKLPEDKLSVSVFHEDDEAFSIWKDRIGLAESRIARLGE----KDN 158
Query: 315 FWEMGETGPCGPCSELHYDR---IGGGRNAADLVNQDDPD-VLEIWNLVFIQYNRETDGS 370
FW MG+TGPCGPCSE++ DR G GR D D D +EIWN+VF+QYNR+ G
Sbjct: 159 FWSMGDTGPCGPCSEIYMDRGEKYGCGR--PDCAPGCDCDRFMEIWNMVFMQYNRQASGE 216
Query: 371 LKPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKE 430
L PLP ID GMG ER+ +VIQD+ +NY+TD+F+P+ I+ +G Q
Sbjct: 217 LTPLPHPSIDTGMGLERICAVIQDRDTNYETDLFIPIIRGIEAASGKTYGQA-------P 269
Query: 431 GIDMAYRVLADHARTLTIALADGGRPDNTGRG 462
+D+ +V+ADH+R + DG P N G+G
Sbjct: 270 DMDVCMKVIADHSRAAAFLIGDGVLPSNEGKG 301
Score = 116 bits (291), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 71/105 (67%), Gaps = 6/105 (5%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+D+F + + H V SS ++P DPTLLF NAGM Q+K +F+G + A +Q
Sbjct: 11 LDYF-ENQGHRVVRSSSLVPQADPTLLFVNAGMVQFKRVFMG-----EEKRDYTTATTSQ 64
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
KC+RAGGKHNDL++VG HHTFFEMLGN+SFGDYFK + I L
Sbjct: 65 KCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKERAIELA 109
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 83/186 (44%), Gaps = 59/186 (31%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +F+G + A +QKC+RAGGKHNDL++VG HHTFFEMLGN+SFG
Sbjct: 44 QFKRVFMG-----EEKRDYTTATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ RA+ +
Sbjct: 99 DYFKE----------------------------------------------RAIELAWDL 112
Query: 218 RAGGKHNDLDDVGKDVYHH--TFFEI------LPESHIIPGSMKDNFWEMGETGPCGPCS 269
G D + V+H F I L ES I KDNFW MG+TGPCGPCS
Sbjct: 113 LLNGYKLPEDKLSVSVFHEDDEAFSIWKDRIGLAESRIARLGEKDNFWSMGDTGPCGPCS 172
Query: 270 ELHYDR 275
E++ DR
Sbjct: 173 EIYMDR 178
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 124/309 (40%), Gaps = 43/309 (13%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKE-----GIDM 517
L PLP ID GMG ER+ ++IQD+ +NY+TD+F P +G K +D+
Sbjct: 217 LTPLPHPSIDTGMGLERICAVIQDRDTNYETDLF---IPIIRGIEAASGKTYGQAPDMDV 273
Query: 518 AYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYR--------VLADHARTLT 569
+V+ADH+R + DG P N G+G + Y L+ A T+
Sbjct: 274 CMKVIADHSRAAAFLIGDGVLPSNEGKGYVLRRILRRAIRYGRQLGLTRPFLSRTAGTVF 333
Query: 570 IALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVN------------TVV 617
+A+ ++ + VR+ +E L RL S ++ V+
Sbjct: 334 EVMAEPYPELKENASFITNVLENEEVRF-SETLDNGLRLLSETLDGMAAKGESVIPGGVI 392
Query: 618 DLLLLSQG------KGATIEDTIGLDIHSI------TDLQTRGVPPTDDSPK-YR-YTPT 663
L + G + E IGLD+ ++R V P+ YR +
Sbjct: 393 FKLYDTYGFPVDIVRDVVREKMIGLDMEGFDAAMAEQKAKSRSVVDFSKQPEAYRNLSAK 452
Query: 664 QPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 723
T Y + TV+ L +++ ++G E I+ D + FY GGQ+ D G +
Sbjct: 453 GMKTGFVGYAGLAAQATVLALVNGGSELETATAGQEIEIVTDTTPFYGASGGQMGDVGVI 512
Query: 724 IGVNDELEV 732
E+ V
Sbjct: 513 TADGLEITV 521
Score = 37.7 bits (86), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRILRRA+RYG +LG S TV +++ + +PEL ++ I ++++ EE +
Sbjct: 302 YVLRRILRRAIRYG-RQLGLTRPFLSRTAGTVFEVMAEPYPELKENASFITNVLENEEVR 360
Query: 830 FLKTLSRGRSLLNRNESHLA 849
F +TL G LL+ +A
Sbjct: 361 FSETLDNGLRLLSETLDGMA 380
>sp|A0L3J9|SYA_MAGSM Alanine--tRNA ligase OS=Magnetococcus sp. (strain MC-1) GN=alaS
PE=3 SV=1
Length = 878
Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 193/340 (56%), Gaps = 37/340 (10%)
Query: 156 FGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +F++ H +V SS ++P +DPTLLF NAGM Q+K +FLG + D + RAV+ Q
Sbjct: 10 FVAFFQQHGHTHVESSSLVPRNDPTLLFTNAGMVQFKSLFLG--EERRDYS---RAVSAQ 64
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMG-ETGPCGPCSELHY 273
KC+RAGGKHNDL++VG+ HHTFFE+L S D F E G +L
Sbjct: 65 KCVRAGGKHNDLENVGRTARHHTFFEMLGNF-----SFGDYFKEEAIRLGWRFVTEDLGI 119
Query: 274 DRIGGGRNAADLVNQDDPAY-----KADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCS 328
D R + ++DD AY + L K+ R+ DNFW MG+TGPCGPCS
Sbjct: 120 D---AQRLLVTVYSEDDEAYAIWTQQIGLPADKVIRIPT----TDNFWSMGDTGPCGPCS 172
Query: 329 ELHYD---RIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGF 385
E+ YD + GG ++ ++D +EIWNLVF+QY+R +DG+L PLPK ID G G
Sbjct: 173 EIFYDYGDTVAGGPPGSE--DEDGDRFVEIWNLVFMQYDRSSDGTLTPLPKPSIDTGAGL 230
Query: 386 ERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHART 445
ERL SV+Q K +NYDTD+F PL +A G + ++ RV+ADH R+
Sbjct: 231 ERLASVLQGKTNNYDTDLFQPLIKAAAALAGVDDTTCSAEQL------VSLRVIADHIRS 284
Query: 446 LTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQ 485
++ +ADG P N GRG + ++ + GM RL+ + Q
Sbjct: 285 VSFLIADGVLPSNEGRGY--VLRRIMRRGMRHGRLLGLEQ 322
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 85/124 (68%), Gaps = 9/124 (7%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F ++ H +V SS ++P +DPTLLF NAGM Q+K +FLG + D + RAV+ QKC+
Sbjct: 13 FFQQHGHTHVESSSLVPRNDPTLLFTNAGMVQFKSLFLG--EERRDYS---RAVSAQKCV 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG----TVDPNSDMAKLVRA 119
RAGGKHNDL++VG+ HHTFFEMLGN+SFGDYFK + I LG T D D +L+
Sbjct: 68 RAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIRLGWRFVTEDLGIDAQRLLVT 127
Query: 120 VNTQ 123
V ++
Sbjct: 128 VYSE 131
Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 91/181 (50%), Gaps = 51/181 (28%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG + D + RAV+ QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG
Sbjct: 44 QFKSLFLG--EERRDYS---RAVSAQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLG----TVDPNSDMAKLVRAVNT 213
DYFK++ I LG T D D +L+ V +
Sbjct: 99 DYFKEE----------------------------AIRLGWRFVTEDLGIDAQRLLVTVYS 130
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
+ DD ++ LP +I DNFW MG+TGPCGPCSE+ Y
Sbjct: 131 E------------DDEAYAIWTQQIG--LPADKVIRIPTTDNFWSMGDTGPCGPCSEIFY 176
Query: 274 D 274
D
Sbjct: 177 D 177
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 71/161 (44%), Gaps = 43/161 (26%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGID---MAY 519
L PLPK ID G G ERL S++Q K +NYDTD+F G +D ++
Sbjct: 216 LTPLPKPSIDTGAGLERLASVLQGKTNNYDTDLFQPLIKAAAALAGVDDTTCSAEQLVSL 275
Query: 520 RVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPD 579
RV+ADH R+++ +ADG P N G
Sbjct: 276 RVIADHIRSVSFLIADGVLPSNEG------------------------------------ 299
Query: 580 NTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRI+RR +R+G LG + LV T+ L+
Sbjct: 300 ---RGYVLRRIMRRGMRHG-RLLGLEQPFMHKLVETLGALM 336
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RR +R+G LG + LV T+ L+GDT+PELT +++ +I+ EE++
Sbjct: 302 YVLRRIMRRGMRHG-RLLGLEQPFMHKLVETLGALMGDTYPELTAQRKTLAMVIETEEKR 360
Query: 830 FLKTLSRG 837
F TL G
Sbjct: 361 FAATLGTG 368
Score = 40.0 bits (92), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 670 GAYEF-----EPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 723
GA EF E +VV L N V+S+++G E ++ +++ FY E GGQ+ D G +
Sbjct: 455 GASEFLGYVHESASASVVALIKNGAEVESLTAGDEGSVVCNQTPFYGESGGQVGDRGVI 513
>sp|Q0AHX2|SYA_NITEC Alanine--tRNA ligase OS=Nitrosomonas eutropha (strain C91) GN=alaS
PE=3 SV=1
Length = 863
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 178/319 (55%), Gaps = 44/319 (13%)
Query: 156 FGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F D+F+ H V SS ++P +DPTLLF NAGM Q+K +FLG D VRAV+ Q
Sbjct: 10 FLDFFETHGHVVVPSSPLVPGNDPTLLFTNAGMVQFKDVFLG-----QDKRPYVRAVSAQ 64
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF--------WEMGETGPCG 266
+C+RAGGKHNDL++VG HHTFFE+L S D F WE TGP
Sbjct: 65 RCVRAGGKHNDLENVGYTARHHTFFEMLGNF-----SFGDYFKRNAILFAWEF-LTGPL- 117
Query: 267 PCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGP 326
+ D++ A D D + + PS+L R+ + DNFW+MGETGPCGP
Sbjct: 118 ---NIPKDKLWATVYAEDDEAADIWLNEVKIAPSRLVRI----ATSDNFWQMGETGPCGP 170
Query: 327 CSELHYD---RIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGM 383
CSE+ YD + GG ++ + D +EIWNLVF+QYNR+T G L PLPK +D GM
Sbjct: 171 CSEIFYDHGPEVAGGPPGSE--DADGDRYVEIWNLVFMQYNRDTSGELHPLPKPSVDTGM 228
Query: 384 GFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHA 443
G ER+ +V+Q SNY+ D+F L EA + T GE+D + + +V+ADH
Sbjct: 229 GLERIAAVMQQVHSNYEIDLFRCLIEAAARVT---------GEQDLS--NNSLKVIADHI 277
Query: 444 RTLTIALADGGRPDNTGRG 462
R + DG P N GRG
Sbjct: 278 RACAFLITDGVIPGNEGRG 296
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 72/105 (68%), Gaps = 6/105 (5%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF + H V SS ++P +DPTLLF NAGM Q+K +FLG D VRAV+ Q
Sbjct: 11 LDFF-ETHGHVVVPSSPLVPGNDPTLLFTNAGMVQFKDVFLG-----QDKRPYVRAVSAQ 64
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
+C+RAGGKHNDL++VG HHTFFEMLGN+SFGDYFK I
Sbjct: 65 RCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRNAILFA 109
Score = 117 bits (292), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 94/177 (53%), Gaps = 43/177 (24%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D VRAV+ Q+C+RAGGKHNDL++VG HHTFFEMLGN+SFG
Sbjct: 44 QFKDVFLG-----QDKRPYVRAVSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ +LFA G ++ D KL V +
Sbjct: 99 DYFKRN---------------AILFA-------WEFLTGPLNIPKD--KLWATVYAE--- 131
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYD 274
DD D++ + +I P S ++ + DNFW+MGETGPCGPCSE+ YD
Sbjct: 132 ---------DDEAADIWLNE-VKIAP-SRLVRIATSDNFWQMGETGPCGPCSEIFYD 177
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 81/164 (49%), Gaps = 43/164 (26%)
Query: 457 DNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGID 516
D +G L PLPK +D GMG ER+ +++Q SNY+ D+F
Sbjct: 211 DTSGE-LHPLPKPSVDTGMGLERIAAVMQQVHSNYEIDLF-------------------- 249
Query: 517 MAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGG 576
R L + A +T GE+D + + +V+ADH R + DG
Sbjct: 250 ---RCLIEAAARVT----------------GEQDLS--NNSLKVIADHIRACAFLITDGV 288
Query: 577 RPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
P N GRGYVLRRILRRA+R+G +LG K F LV+ +VD++
Sbjct: 289 IPGNEGRGYVLRRILRRAIRHGY-RLGQKQSFFHLLVDDLVDVM 331
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 786 KLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNE 845
+LG K F LV+ +VD++G +PEL + ++ +I +EEE+F +TL G +L E
Sbjct: 312 RLGQKQSFFHLLVDDLVDVMGQAYPELMAAKKHVIAVIRQEEERFAETLENGMGVL---E 368
Query: 846 SHLAQ 850
+ LA+
Sbjct: 369 AALAR 373
Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 672 YEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 724
YE E ++ L VD + +G EA ++LD++ FYAE GGQ D G ++
Sbjct: 448 YETLQHEAHILVLYKEGSHVDFIEAGDEAVVVLDQTPFYAESGGQAGDSGELL 500
>sp|B0TFY7|SYA_HELMI Alanine--tRNA ligase OS=Heliobacterium modesticaldum (strain ATCC
51547 / Ice1) GN=alaS PE=3 SV=1
Length = 883
Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/320 (43%), Positives = 182/320 (56%), Gaps = 41/320 (12%)
Query: 156 FGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +YF +K H V SS ++P +DPTLLF+NAGMNQ+K +FLG + +RA +Q
Sbjct: 12 FLEYFEQKGHTIVASSSLVPHNDPTLLFSNAGMNQFKDVFLGF-----EKRPYLRATTSQ 66
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCG-PCSE 270
KC+RAGGKHNDLD VG+ HHTFFE+L KD WE T CG P +
Sbjct: 67 KCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAIRYAWEF-LTDVCGLPKDK 125
Query: 271 LHYDRIGGGRNAADLVNQDDPAYK-----ADLLPSKLTRLENQRSMKDNFWEMGETGPCG 325
L+ A + DD A+ L +++ RL KDNFW MG+TGPCG
Sbjct: 126 LY----------ATVYLDDDEAFALWRDMIGLPEARILRLGE----KDNFWAMGDTGPCG 171
Query: 326 PCSELHYDRIGGGRNAAD--LVNQDDPD-VLEIWNLVFIQYNRETDGSLKPLPKKHIDCG 382
PCSE+ DR R A+ + + D D LEIWNLVF+QYNR+ +G++ PLP+ ID G
Sbjct: 172 PCSEILIDRGEHLRCKAEECAIGKCDCDRWLEIWNLVFMQYNRDENGTMTPLPRPSIDTG 231
Query: 383 MGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADH 442
MG ER+ SV+Q SNYDTD+ PL +++ G+V D G +RV+ADH
Sbjct: 232 MGLERVTSVLQKVGSNYDTDLLRPLIAFVEQ------LCGQVYHRDDRGF--PFRVIADH 283
Query: 443 ARTLTIALADGGRPDNTGRG 462
R+ T + DG P N GRG
Sbjct: 284 IRSCTFLITDGVLPSNEGRG 303
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 72/99 (72%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
+ ++K H V SS ++P +DPTLLF+NAGMNQ+K +FLG + +RA +QKC+
Sbjct: 15 YFEQKGHTIVASSSLVPHNDPTLLFSNAGMNQFKDVFLGF-----EKRPYLRATTSQKCV 69
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
RAGGKHNDLD VG+ HHTFFEMLGN+SFGDYFK I
Sbjct: 70 RAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAI 108
Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 93/183 (50%), Gaps = 53/183 (28%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG + +RA +QKC+RAGGKHNDLD VG+ HHTFFEMLGN+SFG
Sbjct: 46 QFKDVFLGF-----EKRPYLRATTSQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFG 100
Query: 158 DYFKK-----QHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
DYFKK +++ C +P D Y ++L D + A L R
Sbjct: 101 DYFKKDAIRYAWEFLTDVCGLPKD-----------KLYATVYL---DDDEAFA-LWR--- 142
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH 272
D +G LPE+ I+ KDNFW MG+TGPCGPCSE+
Sbjct: 143 --------------DMIG-----------LPEARILRLGEKDNFWAMGDTGPCGPCSEIL 177
Query: 273 YDR 275
DR
Sbjct: 178 IDR 180
Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 71/161 (44%), Gaps = 45/161 (27%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFG---TGAPPYQGRVGEEDKEGIDMAY 519
+ PLP+ ID GMG ER+ S++Q SNYDTD+ G+V D G +
Sbjct: 220 MTPLPRPSIDTGMGLERVTSVLQKVGSNYDTDLLRPLIAFVEQLCGQVYHRDDRGF--PF 277
Query: 520 RVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPD 579
RV+ADH R+ T + DG P N G
Sbjct: 278 RVIADHIRSCTFLITDGVLPSNEG------------------------------------ 301
Query: 580 NTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRILRRAVR+G + LG +V VV+L+
Sbjct: 302 ---RGYVLRRILRRAVRFG-KVLGIDKPFMYEIVPVVVELM 338
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 25/166 (15%)
Query: 676 PCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIY---DEGFMIGV-NDELE 731
P T +GL + V S + +L F + GQ+Y D GF V D +
Sbjct: 226 PSIDTGMGLERVTSVLQKVGSNYDTDLLRPLIAFVEQLCGQVYHRDDRGFPFRVIADHIR 285
Query: 732 VCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKP 791
CT+ L T +P++ E G YVLRRILRRAVR+G + LG
Sbjct: 286 SCTF----LITDGVLPSN----------EGRG------YVLRRILRRAVRFG-KVLGIDK 324
Query: 792 RLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRG 837
+V VV+L+G+ +P++ + + +I EEE+F +TL G
Sbjct: 325 PFMYEIVPVVVELMGEAYPDIREKQDFVCKVIKIEEERFHETLHDG 370
>sp|A8H1T6|SYA_SHEPA Alanine--tRNA ligase OS=Shewanella pealeana (strain ATCC 700345 /
ANG-SQ1) GN=alaS PE=3 SV=1
Length = 875
Score = 224 bits (570), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 179/328 (54%), Gaps = 53/328 (16%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F +YF+ H V SS ++P++DPTLLF NAGMNQ+K +FLG +D RA ++
Sbjct: 11 AFLEYFRTNGHQVVDSSSLVPANDPTLLFTNAGMNQFKDVFLG-----ADKRSYSRATSS 65
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
Q+C+RAGGKHNDLD+VG HHTFFE+L S D F E +H+
Sbjct: 66 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNF-----SFGDYFKE----------EAIHF 110
Query: 274 D--------RIGGGRNAADLVNQDDPAY-----KADLLPSKLTRLENQRSM---KDNFWE 317
++ R + + DD A+ K + + R+ + + DNFW+
Sbjct: 111 AWTFLTEELKLPKERLCVTIYDTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQ 170
Query: 318 MGETGPCGPCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPL 374
MG+TGPCGPCSE+ YD I GGR +D +EIWN+VF+QYNR+ DG +KPL
Sbjct: 171 MGDTGPCGPCSEIFYDHGDHIWGGRPGTP--EEDGDRFIEIWNIVFMQYNRQADGEMKPL 228
Query: 375 PKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDM 434
PK +D GMG ER+ +++Q SNY+ D+F L + A G E+K
Sbjct: 229 PKPSVDTGMGIERIAAIMQGVHSNYEIDIFQALIKK------AAAILGVTDLENK----- 277
Query: 435 AYRVLADHARTLTIALADGGRPDNTGRG 462
+ RV+ADH R+ +ADG P N GRG
Sbjct: 278 SLRVIADHIRSCAFLIADGVMPSNEGRG 305
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 72/99 (72%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
+ + H V SS ++P++DPTLLF NAGMNQ+K +FLG +D RA ++Q+C+
Sbjct: 15 YFRTNGHQVVDSSSLVPANDPTLLFTNAGMNQFKDVFLG-----ADKRSYSRATSSQRCV 69
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
RAGGKHNDLD+VG HHTFFEMLGN+SFGDYFK + I
Sbjct: 70 RAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAI 108
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 95/186 (51%), Gaps = 39/186 (20%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG +D RA ++Q+C+RAGGKHNDLD+VG HHTFFEMLGN+SFG
Sbjct: 46 QFKDVFLG-----ADKRSYSRATSSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFG 100
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK++ +H + +++ L + Y T D ++ V + I
Sbjct: 101 DYFKEE--AIHFAWTFLTEELKLPKERLCVTIYD-----TDDEAFEIWNKKIGVAAENII 153
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY---D 274
R G D+ G DNFW+MG+TGPCGPCSE+ Y D
Sbjct: 154 RIG------DNKG------------------AAYASDNFWQMGDTGPCGPCSEIFYDHGD 189
Query: 275 RIGGGR 280
I GGR
Sbjct: 190 HIWGGR 195
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 77/165 (46%), Gaps = 42/165 (25%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
+KPLPK +D GMG ER+ +I+Q SNY+ D+F +G D E
Sbjct: 225 MKPLPKPSVDTGMGIERIAAIMQGVHSNYEIDIFQALIKKAAAILGVTDLE--------- 275
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
+ + RV+ADH R+ +ADG P N G
Sbjct: 276 --------------------------------NKSLRVIADHIRSCAFLIADGVMPSNEG 303
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLLSQGKG 627
RGYVLRRI+RRAVR+G KLGA F LV T+++++ KG
Sbjct: 304 RGYVLRRIIRRAVRHGN-KLGATESFFYKLVPTLIEVMGADAAKG 347
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVD-IIDEEEE 828
YVLRRI+RRAVR+G KLGA F LV T+++++G + ++ Q+IV+ + EEE
Sbjct: 306 YVLRRIIRRAVRHGN-KLGATESFFYKLVPTLIEVMGADAAKGLQETQAIVEKSLKAEEE 364
Query: 829 QFLKTLSRGRSLLNRNESHLA 849
QF +TL RG +L+ + LA
Sbjct: 365 QFARTLERGLGILDAALNELA 385
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 678 EGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVC 733
+ TV + + VDS+ +G + I+LD + FY E GGQ DEG +I E V
Sbjct: 466 QATVTAIFKAGESVDSIVAGDDVVIVLDNTPFYGESGGQCGDEGVLIADGIEFTVT 521
>sp|Q5F7C4|SYA_NEIG1 Alanine--tRNA ligase OS=Neisseria gonorrhoeae (strain ATCC 700825 /
FA 1090) GN=alaS PE=3 SV=1
Length = 874
Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 181/322 (56%), Gaps = 40/322 (12%)
Query: 156 FGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +F+ K H V SS ++P DDPTLLF NAGMNQ+K +FLG D RA Q
Sbjct: 10 FLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGF-----DKRPYSRATTAQ 64
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSEL 271
KC+RAGGKHNDL++VG HHTFFE++ +D WE T P
Sbjct: 65 KCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEF-LTSP------- 116
Query: 272 HYDRIGGGRNAADLVNQDDPAYKADL----LPS-KLTRLENQRSMK---DNFWEMGETGP 323
+ I + A + +DD AY L +PS ++ R+ + + K DNFW+MG+TGP
Sbjct: 117 EWLNIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGP 176
Query: 324 CGPCSELHYD---RIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHID 380
CGPCSE+ YD I GG + +D +EIWN VF+Q+NR+ G++ PLPK +D
Sbjct: 177 CGPCSEIFYDHGKEIWGGIPGSP--EEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVD 234
Query: 381 CGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLA 440
GMG ER+ +V+Q SNY+ D+F L +A+ + TGAP EE + +V+A
Sbjct: 235 TGMGLERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSM----EEP------SLKVIA 284
Query: 441 DHARTLTIALADGGRPDNTGRG 462
DH R+ + +ADG P N GRG
Sbjct: 285 DHIRSCSFLIADGVLPSNEGRG 306
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + K H V SS ++P DDPTLLF NAGMNQ+K +FLG D RA QKC+
Sbjct: 13 FFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGF-----DKRPYSRATTAQKCV 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
RAGGKHNDL++VG HHTFFEM+GN+SFGDYFK I
Sbjct: 68 RAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAI 106
Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 90/184 (48%), Gaps = 48/184 (26%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D RA QKC+RAGGKHNDL++VG HHTFFEM+GN+SFG
Sbjct: 44 QFKDVFLGF-----DKRPYSRATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ D +H + L + +N K L TV D A +
Sbjct: 99 DYFKR--DAIHFAW-------EFLTSPEWLNIPKDKLLATVYAEDDEAYNIW-------- 141
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHII-------PGSMKDNFWEMGETGPCGPCSE 270
L+++G +P I+ DNFW+MG+TGPCGPCSE
Sbjct: 142 --------LNEIG-----------MPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182
Query: 271 LHYD 274
+ YD
Sbjct: 183 IFYD 186
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 129/334 (38%), Gaps = 104/334 (31%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
+ PLPK +D GMG ER+ +++Q SNY+ D+F
Sbjct: 225 MNPLPKPSVDTGMGLERMAAVMQHVHSNYEIDLF-------------------------- 258
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
+ L A+A TG E+ + +V+ADH R+ + +ADG P N G
Sbjct: 259 ----QDLLKAVAR-----ETGAPFSMEEP-----SLKVIADHIRSCSFLIADGVLPSNEG 304
Query: 583 RGYVLRRILRRAVRYG------------------TEKLGAKPRL---------------- 608
RGYVLRRI+RRAVR+G E GA P L
Sbjct: 305 RGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKNEES 364
Query: 609 -FSSLVNTVVDLLLLSQGKGAT---------IEDTIGLDIHSITDL-QTRGVPPTD---- 653
F+ + T + LL + KG + DT G D+ + R + P +
Sbjct: 365 RFAQTLETGMALLENALAKGGKTLGGEIIFKLYDTYGFPYDLTADICRERNIEPDEAGFE 424
Query: 654 -----------DSPKYRYTPTQP----DTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGT 698
+ ++ P DT Y E V+ L + + V ++ G
Sbjct: 425 REMEAQRARARAAQSFKANAQLPYDGQDTEFKGYSERQTESKVLALYKDGEQVVELNEGD 484
Query: 699 EAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEV 732
+++D + FYAE GGQ+ D G++ + EV
Sbjct: 485 SGAVVIDFTPFYAESGGQVGDVGYIFAGENRFEV 518
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLG F LV +V +G +PEL + I + + EE +
Sbjct: 307 YVLRRIIRRAVRHGY-KLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKNEESR 365
Query: 830 FLKTLSRGRSLL 841
F +TL G +LL
Sbjct: 366 FAQTLETGMALL 377
>sp|Q82TF8|SYA_NITEU Alanine--tRNA ligase OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=alaS PE=3 SV=1
Length = 863
Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 181/326 (55%), Gaps = 58/326 (17%)
Query: 156 FGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F ++F+ + H V SS ++P +DPTLLF NAGM Q+K +FLG D VRAV++Q
Sbjct: 10 FLEFFEARGHVIVPSSPLVPGNDPTLLFTNAGMVQFKDVFLG-----QDKRPYVRAVSSQ 64
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF--------WEMGETGPCG 266
+C+RAGGKHNDL++VG HHTFFE+L S D F WE TG G
Sbjct: 65 RCVRAGGKHNDLENVGYTARHHTFFEMLGNF-----SFGDYFKRKAILFAWEF-LTGSLG 118
Query: 267 PCSELHYDRIGGGRNAADLVNQDDPAYKADLL-------PSKLTRLENQRSMKDNFWEMG 319
E + A + +DD A AD+ PS+L R+ + DNFW+MG
Sbjct: 119 IPREKLW---------ATVYAEDDEA--ADIWLNEVGIDPSRLVRI----ATSDNFWQMG 163
Query: 320 ETGPCGPCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPK 376
+TGPCGPCSE+ YD + GG ++ N + +EIWNLVF+QYNR+ G L PLPK
Sbjct: 164 DTGPCGPCSEIFYDHGPAVAGGPPGSE--NAEGDRYIEIWNLVFMQYNRDASGELHPLPK 221
Query: 377 KHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAY 436
+D GMG ER+ +V+Q SNY+ D+F L EA + TG+ K+ + +
Sbjct: 222 PSVDTGMGLERIAAVMQQVHSNYEIDLFRSLIEAAARVTGS-----------KDLSNNSL 270
Query: 437 RVLADHARTLTIALADGGRPDNTGRG 462
+V+ADH R + DG P N GRG
Sbjct: 271 KVIADHIRACAFLITDGVIPGNEGRG 296
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 5/102 (4%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + + H V SS ++P +DPTLLF NAGM Q+K +FLG D VRAV++Q+C+
Sbjct: 13 FFEARGHVIVPSSPLVPGNDPTLLFTNAGMVQFKDVFLG-----QDKRPYVRAVSSQRCV 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
RAGGKHNDL++VG HHTFFEMLGN+SFGDYFK K I
Sbjct: 68 RAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRKAILFA 109
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 93/182 (51%), Gaps = 53/182 (29%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D VRAV++Q+C+RAGGKHNDL++VG HHTFFEMLGN+SFG
Sbjct: 44 QFKDVFLG-----QDKRPYVRAVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFG 98
Query: 158 DYFKKQH-----DYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
DYFK++ +++ S IP + TV D A +
Sbjct: 99 DYFKRKAILFAWEFLTGSLGIPREK----------------LWATVYAEDDEAADIW--- 139
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH 272
L++VG D S ++ + DNFW+MG+TGPCGPCSE+
Sbjct: 140 -------------LNEVGID-----------PSRLVRIATSDNFWQMGDTGPCGPCSEIF 175
Query: 273 YD 274
YD
Sbjct: 176 YD 177
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 78/158 (49%), Gaps = 42/158 (26%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L PLPK +D GMG ER+ +++Q SNY+ D+F + I+ A RV
Sbjct: 216 LHPLPKPSVDTGMGLERIAAVMQQVHSNYEIDLF---------------RSLIEAAARV- 259
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
TG K+ + + +V+ADH R + DG P N G
Sbjct: 260 -------------------TG------SKDLSNNSLKVIADHIRACAFLITDGVIPGNEG 294
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRILRRA+R+G +LG K F LV+ +VD++
Sbjct: 295 RGYVLRRILRRAIRHGY-RLGQKQPFFYLLVDDLVDVM 331
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 786 KLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNE 845
+LG K F LV+ +VD++G +PELT+ + + +I +EEE+F +TL G +L
Sbjct: 312 RLGQKQPFFYLLVDDLVDVMGPAYPELTRARKHVAGVIRQEEERFAETLENGMEVLEAAL 371
Query: 846 SH 847
SH
Sbjct: 372 SH 373
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 678 EGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 724
E ++ L VD + + EA ++LD++ FYAE GGQ D G ++
Sbjct: 454 EAQILALYKQGSRVDFIEADDEAVVVLDQTPFYAESGGQAGDSGELL 500
>sp|Q9JYG6|SYA_NEIMB Alanine--tRNA ligase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=alaS PE=3 SV=1
Length = 874
Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 182/322 (56%), Gaps = 40/322 (12%)
Query: 156 FGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +F+ K H V SS ++P DDPTLLF NAGMNQ+K +FLG D RA Q
Sbjct: 10 FLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGF-----DKRPYSRATTAQ 64
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSEL 271
KC+RAGGKHNDL++VG HHTFFE++ +D WE T P
Sbjct: 65 KCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEF-LTSP------- 116
Query: 272 HYDRIGGGRNAADLVNQDDPAYKADL----LPS-KLTRLENQRSMK---DNFWEMGETGP 323
+ I + A + +DD AY L +PS ++ R+ + + K DNFW+MG+TGP
Sbjct: 117 EWLNIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGP 176
Query: 324 CGPCSELHYD---RIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHID 380
CGPCSE+ YD I GG + +D +EIWN VF+Q+NR+ G++ PLPK +D
Sbjct: 177 CGPCSEIFYDHGEEIWGGIPGSP--EEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVD 234
Query: 381 CGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLA 440
GMG ER+ +V+Q SNY+ D+F L +A+ + TGAP R+ E + +V+A
Sbjct: 235 TGMGLERIAAVMQHVHSNYEIDLFQDLLKAVARETGAPF---RMEEP-------SLKVIA 284
Query: 441 DHARTLTIALADGGRPDNTGRG 462
DH R+ + +ADG P N GRG
Sbjct: 285 DHIRSCSFLIADGVLPSNEGRG 306
Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + K H V SS ++P DDPTLLF NAGMNQ+K +FLG D RA QKC+
Sbjct: 13 FFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGF-----DKRPYSRATTAQKCV 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
RAGGKHNDL++VG HHTFFEM+GN+SFGDYFK I
Sbjct: 68 RAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAI 106
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 90/184 (48%), Gaps = 48/184 (26%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D RA QKC+RAGGKHNDL++VG HHTFFEM+GN+SFG
Sbjct: 44 QFKDVFLGF-----DKRPYSRATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ D +H + L + +N K L TV D A +
Sbjct: 99 DYFKR--DAIHFAW-------EFLTSPEWLNIPKDKLLATVYAEDDEAYNIW-------- 141
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHII-------PGSMKDNFWEMGETGPCGPCSE 270
L+++G +P I+ DNFW+MG+TGPCGPCSE
Sbjct: 142 --------LNEIG-----------MPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182
Query: 271 LHYD 274
+ YD
Sbjct: 183 IFYD 186
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 130/334 (38%), Gaps = 104/334 (31%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
+ PLPK +D GMG ER+ +++Q SNY+ D+F
Sbjct: 225 MNPLPKPSVDTGMGLERIAAVMQHVHSNYEIDLF-------------------------- 258
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
+ L A+A TG E+ + +V+ADH R+ + +ADG P N G
Sbjct: 259 ----QDLLKAVAR-----ETGAPFRMEEP-----SLKVIADHIRSCSFLIADGVLPSNEG 304
Query: 583 RGYVLRRILRRAVRYG------------------TEKLGAKPRL---------------- 608
RGYVLRRI+RRAVR+G E GA P L
Sbjct: 305 RGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKNEES 364
Query: 609 -FSSLVNTVVDLLLLSQGKGAT---------IEDTIGLDIHSITDL-QTRGVPPTD---- 653
F+ + T + LL + KG + DT G D+ + R + P +
Sbjct: 365 RFAQTLETGMALLENALVKGGKTLGGEIIFKLYDTYGFPYDLTADICRERNIEPDEAGFE 424
Query: 654 -----------DSPKYRYTPTQP----DTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGT 698
+ ++ P DT Y E V+ L + + V+ ++ G
Sbjct: 425 REMEAQRARARAAQSFKANAQLPYDGQDTEFKGYSERQTESKVLALYKDGEQVNELNEGD 484
Query: 699 EAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEV 732
+++D + FYAE GGQ+ D G++ + EV
Sbjct: 485 SGAVVIDFTPFYAESGGQVGDVGYIFSGENRFEV 518
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLG F LV +V +G +PEL + I + + EE +
Sbjct: 307 YVLRRIIRRAVRHGY-KLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKNEESR 365
Query: 830 FLKTLSRGRSLL 841
F +TL G +LL
Sbjct: 366 FAQTLETGMALL 377
>sp|B0VAI3|SYA_ACIBY Alanine--tRNA ligase OS=Acinetobacter baumannii (strain AYE)
GN=alaS PE=3 SV=1
Length = 878
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 176/320 (55%), Gaps = 35/320 (10%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F YF+ Q H V SS ++P++DPTLLF NAGMNQ+K FLG + VRA +
Sbjct: 9 AFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGL-----EKRDYVRATTS 63
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEM--GETGPCGPC 268
QKC+RAGGKHNDLD+VG HHTFFE+L +D WE E P
Sbjct: 64 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 123
Query: 269 SELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMK---DNFWEMGETGPCG 325
+L+ A D+ N++ L P ++ R+ + + K DNFW MG+TGPCG
Sbjct: 124 DKLYVTVYHTDDEAYDIWNKE-----IGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCG 178
Query: 326 PCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCG 382
PCSE+ +D I GG + +D +EIWN VF+Q+NR DG L PLP +D G
Sbjct: 179 PCSEIFFDHGEHIWGGLPGSP--EEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTG 236
Query: 383 MGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADH 442
MG ER+ +V+Q SNYD D+F L +A +G ED EG + RV+ADH
Sbjct: 237 MGLERISAVLQHVNSNYDIDLFQHLLKAAAN---------IIGIED-EG-QPSLRVVADH 285
Query: 443 ARTLTIALADGGRPDNTGRG 462
AR+ +ADG P N GRG
Sbjct: 286 ARSCCFLIADGVNPSNEGRG 305
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 69/95 (72%), Gaps = 5/95 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
+ + + H V SS ++P++DPTLLF NAGMNQ+K FLG + VRA +QKC+
Sbjct: 13 YFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGL-----EKRDYVRATTSQKCV 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
RAGGKHNDLD+VG HHTFFEMLGN+SFGDYFK
Sbjct: 68 RAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFK 102
Score = 106 bits (265), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 90/177 (50%), Gaps = 34/177 (19%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K FLG + VRA +QKC+RAGGKHNDLD+VG HHTFFEMLGN+SFG
Sbjct: 44 QFKDCFLGL-----EKRDYVRATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ D + + + + L + Y ++ T D D+ + ++ I
Sbjct: 99 DYFKR--DALKFAWEFLTSEQWLALPKDKL--YVTVY-HTDDEAYDIWNKEIGLAPERII 153
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYD 274
R G D+ G+ DNFW MG+TGPCGPCSE+ +D
Sbjct: 154 RIG------DNKGEKY------------------ASDNFWAMGDTGPCGPCSEIFFD 186
Score = 99.8 bits (247), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 129/328 (39%), Gaps = 109/328 (33%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L PLP +D GMG ER+ +++Q SNYD D+F +G ED+
Sbjct: 225 LHPLPAPSVDTGMGLERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDE---------- 274
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
G+P + RV+ADHAR+ +ADG P N G
Sbjct: 275 --------------GQP-----------------SLRVVADHARSCCFLIADGVNPSNEG 303
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD-------------------LLLLS 623
RGYVLRRI+RRAVR+G KLGA F ++ +++ L+
Sbjct: 304 RGYVLRRIIRRAVRHGN-KLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIREE 362
Query: 624 QGKGATIEDTIGLDIHSITDLQTRGVP-------------PTD----------------- 653
+ T+E + L + L+ + +P PTD
Sbjct: 363 EQFAKTLEQGLKLLEGELAQLKDKTIPGATVFKLYDTYGFPTDLTADIARERGFIIDEAG 422
Query: 654 -------------DSPKYRYTPTQPDTADGAYEFE-----PCEGTVVGLRYNKQFVDSVS 695
D+ K+ +G +F+ +G +V + + VD VS
Sbjct: 423 FEVEMAAQRQRARDAGKFAVDYNNIVKVEGETQFDGYTNTTGQGQIVAIYKDGVQVDEVS 482
Query: 696 SGTEAGILLDKSNFYAEQGGQIYDEGFM 723
G EA I+L+++ FYAE GGQI D G
Sbjct: 483 EGDEALIVLNQTPFYAESGGQIGDTGIF 510
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLGA F ++ +++++G +PEL + I + EEEQ
Sbjct: 306 YVLRRIIRRAVRHGN-KLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIREEEQ 364
Query: 830 FLKTLSRGRSLLNRNESHLAQ 850
F KTL +G LL E LAQ
Sbjct: 365 FAKTLEQGLKLL---EGELAQ 382
>sp|A3M3W2|SYA_ACIBT Alanine--tRNA ligase OS=Acinetobacter baumannii (strain ATCC 17978
/ NCDC KC 755) GN=alaS PE=3 SV=2
Length = 878
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 176/320 (55%), Gaps = 35/320 (10%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F YF+ Q H V SS ++P++DPTLLF NAGMNQ+K FLG + VRA +
Sbjct: 9 AFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGL-----EKRDYVRATTS 63
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEM--GETGPCGPC 268
QKC+RAGGKHNDLD+VG HHTFFE+L +D WE E P
Sbjct: 64 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 123
Query: 269 SELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMK---DNFWEMGETGPCG 325
+L+ A D+ N++ L P ++ R+ + + K DNFW MG+TGPCG
Sbjct: 124 DKLYVTVYHTDDEAYDIWNKE-----IGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCG 178
Query: 326 PCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCG 382
PCSE+ +D I GG + +D +EIWN VF+Q+NR DG L PLP +D G
Sbjct: 179 PCSEIFFDHGEHIWGGLPGSP--EEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTG 236
Query: 383 MGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADH 442
MG ER+ +V+Q SNYD D+F L +A +G ED EG + RV+ADH
Sbjct: 237 MGLERISAVLQHVNSNYDIDLFQHLLKAAAN---------IIGIED-EG-QPSLRVVADH 285
Query: 443 ARTLTIALADGGRPDNTGRG 462
AR+ +ADG P N GRG
Sbjct: 286 ARSCCFLIADGVNPSNEGRG 305
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 69/95 (72%), Gaps = 5/95 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
+ + + H V SS ++P++DPTLLF NAGMNQ+K FLG + VRA +QKC+
Sbjct: 13 YFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGL-----EKRDYVRATTSQKCV 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
RAGGKHNDLD+VG HHTFFEMLGN+SFGDYFK
Sbjct: 68 RAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFK 102
Score = 106 bits (265), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 90/177 (50%), Gaps = 34/177 (19%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K FLG + VRA +QKC+RAGGKHNDLD+VG HHTFFEMLGN+SFG
Sbjct: 44 QFKDCFLGL-----EKRDYVRATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ D + + + + L + Y ++ T D D+ + ++ I
Sbjct: 99 DYFKR--DALKFAWEFLTSEQWLALPKDKL--YVTVY-HTDDEAYDIWNKEIGLAPERII 153
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYD 274
R G D+ G+ DNFW MG+TGPCGPCSE+ +D
Sbjct: 154 RIG------DNKGEKY------------------ASDNFWAMGDTGPCGPCSEIFFD 186
Score = 99.8 bits (247), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 129/328 (39%), Gaps = 109/328 (33%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L PLP +D GMG ER+ +++Q SNYD D+F +G ED+
Sbjct: 225 LHPLPAPSVDTGMGLERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDE---------- 274
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
G+P + RV+ADHAR+ +ADG P N G
Sbjct: 275 --------------GQP-----------------SLRVVADHARSCCFLIADGVNPSNEG 303
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD-------------------LLLLS 623
RGYVLRRI+RRAVR+G KLGA F ++ +++ L+
Sbjct: 304 RGYVLRRIIRRAVRHGN-KLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIREE 362
Query: 624 QGKGATIEDTIGLDIHSITDLQTRGVP-------------PTD----------------- 653
+ T+E + L + L+ + +P PTD
Sbjct: 363 EQFAKTLEQGLKLLEGELAQLKDKTIPGATVFKLYDTYGFPTDLTADIARERGFIIDEAG 422
Query: 654 -------------DSPKYRYTPTQPDTADGAYEFE-----PCEGTVVGLRYNKQFVDSVS 695
D+ K+ +G +F+ +G +V + + VD VS
Sbjct: 423 FEVEMAAQRQRARDAGKFAVDYNNIVKVEGETQFDGYTNTTGQGQIVAIYKDGVQVDEVS 482
Query: 696 SGTEAGILLDKSNFYAEQGGQIYDEGFM 723
G EA I+L+++ FYAE GGQI D G
Sbjct: 483 EGDEALIVLNQTPFYAESGGQIGDTGIF 510
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLGA F ++ +++++G +PEL + I + EEEQ
Sbjct: 306 YVLRRIIRRAVRHGN-KLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIREEEQ 364
Query: 830 FLKTLSRGRSLLNRNESHLAQ 850
F KTL +G LL E LAQ
Sbjct: 365 FAKTLEQGLKLL---EGELAQ 382
>sp|B2HWK7|SYA_ACIBC Alanine--tRNA ligase OS=Acinetobacter baumannii (strain ACICU)
GN=alaS PE=3 SV=2
Length = 878
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 176/320 (55%), Gaps = 35/320 (10%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F YF+ Q H V SS ++P++DPTLLF NAGMNQ+K FLG + VRA +
Sbjct: 9 AFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGL-----EKRDYVRATTS 63
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEM--GETGPCGPC 268
QKC+RAGGKHNDLD+VG HHTFFE+L +D WE E P
Sbjct: 64 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 123
Query: 269 SELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMK---DNFWEMGETGPCG 325
+L+ A D+ N++ L P ++ R+ + + K DNFW MG+TGPCG
Sbjct: 124 DKLYVTVYHTDDEAYDIWNKE-----IGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCG 178
Query: 326 PCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCG 382
PCSE+ +D I GG + +D +EIWN VF+Q+NR DG L PLP +D G
Sbjct: 179 PCSEIFFDHGEHIWGGLPGSP--EEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTG 236
Query: 383 MGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADH 442
MG ER+ +V+Q SNYD D+F L +A +G ED EG + RV+ADH
Sbjct: 237 MGLERISAVLQHVNSNYDIDLFQHLLKAAAN---------IIGIED-EG-QPSLRVVADH 285
Query: 443 ARTLTIALADGGRPDNTGRG 462
AR+ +ADG P N GRG
Sbjct: 286 ARSCCFLIADGVNPSNEGRG 305
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 69/95 (72%), Gaps = 5/95 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
+ + + H V SS ++P++DPTLLF NAGMNQ+K FLG + VRA +QKC+
Sbjct: 13 YFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGL-----EKRDYVRATTSQKCV 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
RAGGKHNDLD+VG HHTFFEMLGN+SFGDYFK
Sbjct: 68 RAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFK 102
Score = 106 bits (265), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 90/177 (50%), Gaps = 34/177 (19%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K FLG + VRA +QKC+RAGGKHNDLD+VG HHTFFEMLGN+SFG
Sbjct: 44 QFKDCFLGL-----EKRDYVRATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ D + + + + L + Y ++ T D D+ + ++ I
Sbjct: 99 DYFKR--DALKFAWEFLTSEQWLALPKDKL--YVTVY-HTDDEAYDIWNKEIGLAPERII 153
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYD 274
R G D+ G+ DNFW MG+TGPCGPCSE+ +D
Sbjct: 154 RIG------DNKGEKY------------------ASDNFWAMGDTGPCGPCSEIFFD 186
Score = 99.8 bits (247), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 129/328 (39%), Gaps = 109/328 (33%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L PLP +D GMG ER+ +++Q SNYD D+F +G ED+
Sbjct: 225 LHPLPAPSVDTGMGLERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDE---------- 274
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
G+P + RV+ADHAR+ +ADG P N G
Sbjct: 275 --------------GQP-----------------SLRVVADHARSCCFLIADGVNPSNEG 303
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD-------------------LLLLS 623
RGYVLRRI+RRAVR+G KLGA F ++ +++ L+
Sbjct: 304 RGYVLRRIIRRAVRHGN-KLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIREE 362
Query: 624 QGKGATIEDTIGLDIHSITDLQTRGVP-------------PTD----------------- 653
+ T+E + L + L+ + +P PTD
Sbjct: 363 EQFAKTLEQGLKLLEGELAQLKDKTIPGATVFKLYDTYGFPTDLTADIARERGFIIDEAG 422
Query: 654 -------------DSPKYRYTPTQPDTADGAYEFE-----PCEGTVVGLRYNKQFVDSVS 695
D+ K+ +G +F+ +G +V + + VD VS
Sbjct: 423 FEVEMAAQRQRARDAGKFAVDYNNIVKVEGETQFDGYTNTTGQGQIVAIYKDGVQVDEVS 482
Query: 696 SGTEAGILLDKSNFYAEQGGQIYDEGFM 723
G EA I+L+++ FYAE GGQI D G
Sbjct: 483 EGDEALIVLNQTPFYAESGGQIGDTGIF 510
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLGA F ++ +++++G +PEL + I + EEEQ
Sbjct: 306 YVLRRIIRRAVRHGN-KLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIREEEQ 364
Query: 830 FLKTLSRGRSLLNRNESHLAQ 850
F KTL +G LL E LAQ
Sbjct: 365 FAKTLEQGLKLL---EGELAQ 382
>sp|Q9JTG4|SYA_NEIMA Alanine--tRNA ligase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=alaS PE=3 SV=1
Length = 874
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 179/322 (55%), Gaps = 40/322 (12%)
Query: 156 FGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +F+ K H V SS ++P DDPTLLF NAGMNQ+K +FLG D RA Q
Sbjct: 10 FLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGF-----DKRPYSRATTAQ 64
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSEL 271
KC+RAGGKHNDL++VG HHTFFE++ +D WE T P
Sbjct: 65 KCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEF-LTSP------- 116
Query: 272 HYDRIGGGRNAADLVNQDDPAYKADL----LPS-KLTRLENQRSMK---DNFWEMGETGP 323
+ I + A + +DD AY L +PS ++ R+ + + K DNFW+MG+TGP
Sbjct: 117 EWLNIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGP 176
Query: 324 CGPCSELHYD---RIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHID 380
CGPCSE+ YD I GG + +D +EIWN VF+Q+NR+ G++ PLPK +D
Sbjct: 177 CGPCSEIFYDHGEEIWGGIPGSP--EEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVD 234
Query: 381 CGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLA 440
GMG ER+ +V+Q SNY+ D+F L +A+ + TGA + + +V+A
Sbjct: 235 TGMGLERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMD----------EPSLKVIA 284
Query: 441 DHARTLTIALADGGRPDNTGRG 462
DH R+ + +ADG P N GRG
Sbjct: 285 DHIRSCSFLIADGVLPSNEGRG 306
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + K H V SS ++P DDPTLLF NAGMNQ+K +FLG D RA QKC+
Sbjct: 13 FFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGF-----DKRPYSRATTAQKCV 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
RAGGKHNDL++VG HHTFFEM+GN+SFGDYFK I
Sbjct: 68 RAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAI 106
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 91/184 (49%), Gaps = 48/184 (26%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D RA QKC+RAGGKHNDL++VG HHTFFEM+GN+SFG
Sbjct: 44 QFKDVFLGF-----DKRPYSRATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ D +H + L + +N K L TV D A +
Sbjct: 99 DYFKR--DAIHFAW-------EFLTSPEWLNIPKDKLLATVYAEDDEAYNIW-------- 141
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHII-------PGSMKDNFWEMGETGPCGPCSE 270
L+++G +P I+ + DNFW+MG+TGPCGPCSE
Sbjct: 142 --------LNEIG-----------MPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPCSE 182
Query: 271 LHYD 274
+ YD
Sbjct: 183 IFYD 186
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 123/337 (36%), Gaps = 110/337 (32%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
+ PLPK +D GMG ER+ +++Q SNY+ D+F
Sbjct: 225 MNPLPKPSVDTGMGLERMAAVMQHVHSNYEIDLF-------------------------- 258
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDM---AYRVLADHARTLTIALADGGRPD 579
+ + V E M + +V+ADH R+ + +ADG P
Sbjct: 259 -----------------QDLLKAVARETGAAFSMDEPSLKVIADHIRSCSFLIADGVLPS 301
Query: 580 NTGRGYVLRRILRRAVRYG------------------TEKLGAKPRL------------- 608
N GRGYVLRRI+RRAVR+G E GA P L
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361
Query: 609 ----FSSLVNTVVDLLLLSQGKGAT---------IEDTIGLDIHSITDLQTRGVPPTDDS 655
F+ + T + LL + KG + DT G D+ D++
Sbjct: 362 EESRFAQTLETGMALLENALAKGGKTLDGEIIFKLYDTYGFPYDLTADICRERNIELDEA 421
Query: 656 ----------------PKYRYTPTQP----DTADGAYEFEPCEGTVVGLRYNKQFVDSVS 695
++ P DT Y E V+ L + + V+ ++
Sbjct: 422 GFEREMEAQRARARAAQSFKANAQLPYDGQDTEFKGYSERQTESKVLALYKDGEQVNELN 481
Query: 696 SGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEV 732
G +++D + FYAE GGQ+ D G++ + EV
Sbjct: 482 EGDSGAVVIDFTPFYAESGGQVGDVGYIFSSENRFEV 518
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLG F LV +V +G +PEL + I + + EE +
Sbjct: 307 YVLRRIIRRAVRHGY-KLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKNEESR 365
Query: 830 FLKTLSRGRSLL 841
F +TL G +LL
Sbjct: 366 FAQTLETGMALL 377
>sp|A9M198|SYA_NEIM0 Alanine--tRNA ligase OS=Neisseria meningitidis serogroup C (strain
053442) GN=alaS PE=3 SV=2
Length = 874
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 179/322 (55%), Gaps = 40/322 (12%)
Query: 156 FGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +F+ K H V SS ++P DDPTLLF NAGMNQ+K +FLG D RA Q
Sbjct: 10 FLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGF-----DKRPYSRATTAQ 64
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSEL 271
KC+RAGGKHNDL++VG HHTFFE++ +D WE T P
Sbjct: 65 KCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEF-LTSP------- 116
Query: 272 HYDRIGGGRNAADLVNQDDPAYKADL----LPS-KLTRLENQRSMK---DNFWEMGETGP 323
+ I + A + +DD AY L +PS ++ R+ + + K DNFW+MG+TGP
Sbjct: 117 EWLNIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGP 176
Query: 324 CGPCSELHYD---RIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHID 380
CGPCSE+ YD I GG + +D +EIWN VF+Q+NR+ G++ PLPK +D
Sbjct: 177 CGPCSEIFYDHGEEIWGGIPGSP--EEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVD 234
Query: 381 CGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLA 440
GMG ER+ +V+Q SNY+ D+F L +A+ + TGA + + +V+A
Sbjct: 235 TGMGLERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMD----------EPSLKVIA 284
Query: 441 DHARTLTIALADGGRPDNTGRG 462
DH R+ + +ADG P N GRG
Sbjct: 285 DHIRSCSFLIADGVLPSNEGRG 306
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + K H V SS ++P DDPTLLF NAGMNQ+K +FLG D RA QKC+
Sbjct: 13 FFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGF-----DKRPYSRATTAQKCV 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
RAGGKHNDL++VG HHTFFEM+GN+SFGDYFK I
Sbjct: 68 RAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAI 106
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 91/184 (49%), Gaps = 48/184 (26%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D RA QKC+RAGGKHNDL++VG HHTFFEM+GN+SFG
Sbjct: 44 QFKDVFLGF-----DKRPYSRATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ D +H + L + +N K L TV D A +
Sbjct: 99 DYFKR--DAIHFAW-------EFLTSPEWLNIPKDKLLATVYAEDDEAYNIW-------- 141
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHII-------PGSMKDNFWEMGETGPCGPCSE 270
L+++G +P I+ + DNFW+MG+TGPCGPCSE
Sbjct: 142 --------LNEIG-----------MPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPCSE 182
Query: 271 LHYD 274
+ YD
Sbjct: 183 IFYD 186
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 123/337 (36%), Gaps = 110/337 (32%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
+ PLPK +D GMG ER+ +++Q SNY+ D+F
Sbjct: 225 MNPLPKPSVDTGMGLERMAAVMQHVHSNYEIDLF-------------------------- 258
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDM---AYRVLADHARTLTIALADGGRPD 579
+ + V E M + +V+ADH R+ + +ADG P
Sbjct: 259 -----------------QDLLKAVARETGAAFSMDEPSLKVIADHIRSCSFLIADGVLPS 301
Query: 580 NTGRGYVLRRILRRAVRYG------------------TEKLGAKPRL------------- 608
N GRGYVLRRI+RRAVR+G E GA P L
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361
Query: 609 ----FSSLVNTVVDLLLLSQGKGAT---------IEDTIGLDIHSITDLQTRGVPPTDDS 655
F+ + T + LL + KG + DT G D+ D++
Sbjct: 362 EESRFAQTLETGMALLENALAKGGKTLDGEIIFKLYDTYGFPYDLTADICRERNIELDEA 421
Query: 656 ----------------PKYRYTPTQP----DTADGAYEFEPCEGTVVGLRYNKQFVDSVS 695
++ P DT Y E V+ L + + V+ ++
Sbjct: 422 GFEREMEAQRARARAAQSFKANAQLPYDGQDTEFKGYSERQTESKVLALYKDGEQVNELN 481
Query: 696 SGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEV 732
G +++D + FYAE GGQ+ D G++ + EV
Sbjct: 482 EGDSGAVVIDFTPFYAESGGQVGDVGYIFSSENRFEV 518
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLG F LV +V +G +PEL + I + + EE +
Sbjct: 307 YVLRRIIRRAVRHGY-KLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKNEESR 365
Query: 830 FLKTLSRGRSLL 841
F +TL G +LL
Sbjct: 366 FAQTLETGMALL 377
>sp|A1KV20|SYA_NEIMF Alanine--tRNA ligase OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=alaS PE=3
SV=1
Length = 874
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 180/322 (55%), Gaps = 40/322 (12%)
Query: 156 FGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +F+ K H V SS ++P DDPTLLF NAGMNQ+K +FLG D RA Q
Sbjct: 10 FLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGF-----DKRPYSRATTAQ 64
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSEL 271
KC+RAGGKHNDL++VG HHTFFE++ +D WE T P
Sbjct: 65 KCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEF-LTSP------- 116
Query: 272 HYDRIGGGRNAADLVNQDDPAYKADL----LPS-KLTRLENQRSMK---DNFWEMGETGP 323
+ I + A + +DD AY L +PS ++ R+ + + K DNFW+MG+TGP
Sbjct: 117 EWLNIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGP 176
Query: 324 CGPCSELHYD---RIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHID 380
CGPCSE+ YD I GG + +D +EIWN VF+Q+NR+ G++ PLPK +D
Sbjct: 177 CGPCSEIFYDHGEEIWGGIPGSP--EEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVD 234
Query: 381 CGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLA 440
GMG ER+ +V+Q SNY+ D+F L +A+ + TGA EE + +V+A
Sbjct: 235 TGMGLERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSM----EEP------SLKVIA 284
Query: 441 DHARTLTIALADGGRPDNTGRG 462
DH R+ + +ADG P N GRG
Sbjct: 285 DHIRSCSFLIADGVLPSNEGRG 306
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + K H V SS ++P DDPTLLF NAGMNQ+K +FLG D RA QKC+
Sbjct: 13 FFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGF-----DKRPYSRATTAQKCV 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
RAGGKHNDL++VG HHTFFEM+GN+SFGDYFK I
Sbjct: 68 RAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAI 106
Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 90/184 (48%), Gaps = 48/184 (26%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D RA QKC+RAGGKHNDL++VG HHTFFEM+GN+SFG
Sbjct: 44 QFKDVFLGF-----DKRPYSRATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFG 98
Query: 158 DYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 217
DYFK+ D +H + L + +N K L TV D A +
Sbjct: 99 DYFKR--DAIHFAW-------EFLTSPEWLNIPKDKLLATVYAEDDEAYNIW-------- 141
Query: 218 RAGGKHNDLDDVGKDVYHHTFFEILPESHII-------PGSMKDNFWEMGETGPCGPCSE 270
L+++G +P I+ DNFW+MG+TGPCGPCSE
Sbjct: 142 --------LNEIG-----------MPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182
Query: 271 LHYD 274
+ YD
Sbjct: 183 IFYD 186
Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 47/158 (29%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDM---AY 519
+ PLPK +D GMG ER+ +++Q SNY+ D+F V E M +
Sbjct: 225 MNPLPKPSVDTGMGLERMAAVMQHVHSNYEIDLF----QDLLKAVARETGAAFSMEEPSL 280
Query: 520 RVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPD 579
+V+ADH R+ + +ADG P N G
Sbjct: 281 KVIADHIRSCSFLIADGVLPSNEG------------------------------------ 304
Query: 580 NTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVV 617
RGYVLRRI+RRAVR+G KLG F LV +V
Sbjct: 305 ---RGYVLRRIIRRAVRHGY-KLGQSKPFFHKLVADLV 338
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLG F LV +V +GD +PEL + I + + EE +
Sbjct: 307 YVLRRIIRRAVRHGY-KLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEALKNEESR 365
Query: 830 FLKTLSRGRSLL 841
F +TL G +LL
Sbjct: 366 FAQTLETGMALL 377
Score = 40.4 bits (93), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 666 DTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIG 725
DT Y E V+ L + + VD ++ G +++D + FYAE GGQ+ D G++
Sbjct: 452 DTEFKGYSERQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGYIFS 511
Query: 726 VNDELEV 732
+ EV
Sbjct: 512 GENRFEV 518
>sp|A3D783|SYA_SHEB5 Alanine--tRNA ligase OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=alaS PE=3 SV=1
Length = 874
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 169/320 (52%), Gaps = 37/320 (11%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F ++F+ H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA
Sbjct: 11 AFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGM-----DKRNYTRATTA 65
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
Q+C+RAGGKHNDLD+VG HHTFFE+L S D F E E G
Sbjct: 66 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNF-----SFGDYFKE--EAIRFGWTFLTET 118
Query: 274 DRIGGGRNAADLVNQDDPAY-----KADLLPSKLTRLENQRSM---KDNFWEMGETGPCG 325
++ R + DD A+ K + + R+ + + DNFW+MG+TGPCG
Sbjct: 119 LKLPKERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCG 178
Query: 326 PCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCG 382
PCSE+ YD I GGR + +D +EIWN+VF+QYNR+ G + PLPK +D G
Sbjct: 179 PCSEIFYDHGDHIWGGRPGSP--EEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTG 236
Query: 383 MGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADH 442
MG ER+ +++Q SNY+ D+F L + G + + RV+ADH
Sbjct: 237 MGIERIAAIMQGVHSNYEIDIFRTLIAKAAEIIGVSDL-----------TEKSLRVIADH 285
Query: 443 ARTLTIALADGGRPDNTGRG 462
R+ +ADG P N GRG
Sbjct: 286 IRSCAFLIADGVMPSNEGRG 305
Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 69/102 (67%), Gaps = 5/102 (4%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA Q+C+
Sbjct: 15 FFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGM-----DKRNYTRATTAQRCV 69
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
RAGGKHNDLD+VG HHTFFEMLGN+SFGDYFK + I G
Sbjct: 70 RAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFG 111
Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 92/191 (48%), Gaps = 49/191 (25%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D RA Q+C+RAGGKHNDLD+VG HHTFFEMLGN+SFG
Sbjct: 46 QFKDVFLGM-----DKRNYTRATTAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFG 100
Query: 158 DYFKKQH-----DYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
DYFK++ ++ + +P + + Y+ T D ++ V
Sbjct: 101 DYFKEEAIRFGWTFLTETLKLPKERLCVTI-------YQ-----TDDEAFEIWNKKIGVA 148
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH 272
+ IR G D+ G DNFW+MG+TGPCGPCSE+
Sbjct: 149 AENIIRIG------DNKG------------------AAYASDNFWQMGDTGPCGPCSEIF 184
Query: 273 Y---DRIGGGR 280
Y D I GGR
Sbjct: 185 YDHGDHIWGGR 195
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 72/156 (46%), Gaps = 42/156 (26%)
Query: 465 PLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLAD 524
PLPK +D GMG ER+ +I+Q SNY+ D+F T +G D + + RV+AD
Sbjct: 227 PLPKPSVDTGMGIERIAAIMQGVHSNYEIDIFRTLIAKAAEIIGVSDL--TEKSLRVIAD 284
Query: 525 HARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRG 584
H R+ +ADG P N G RG
Sbjct: 285 HIRSCAFLIADGVMPSNEG---------------------------------------RG 305
Query: 585 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
YVLRRI+RRAVR+G KLGA F LV +++ ++
Sbjct: 306 YVLRRIIRRAVRHGN-KLGATEAFFYKLVPSLIAVM 340
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLGA F LV +++ ++GD L + + + EEEQ
Sbjct: 306 YVLRRIIRRAVRHGN-KLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAEEEQ 364
Query: 830 FLKTLSRGRSLLN 842
F +TL RG +L+
Sbjct: 365 FARTLERGLGILD 377
>sp|A9KYF8|SYA_SHEB9 Alanine--tRNA ligase OS=Shewanella baltica (strain OS195) GN=alaS
PE=3 SV=1
Length = 874
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 169/320 (52%), Gaps = 37/320 (11%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F ++F+ H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA
Sbjct: 11 AFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGM-----DKRNYTRATTA 65
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
Q+C+RAGGKHNDLD+VG HHTFFE+L S D F E E G
Sbjct: 66 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNF-----SFGDYFKE--EAIRFGWTFLTET 118
Query: 274 DRIGGGRNAADLVNQDDPAY-----KADLLPSKLTRLENQRSM---KDNFWEMGETGPCG 325
++ R + DD A+ K + + R+ + + DNFW+MG+TGPCG
Sbjct: 119 LKLPKERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCG 178
Query: 326 PCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCG 382
PCSE+ YD I GGR + +D +EIWN+VF+QYNR+ G + PLPK +D G
Sbjct: 179 PCSEIFYDHGDHIWGGRPGSP--EEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTG 236
Query: 383 MGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADH 442
MG ER+ +++Q SNY+ D+F L + G + + RV+ADH
Sbjct: 237 MGIERIAAIMQGVHSNYEIDIFRTLIAKAAEIIGVSDL-----------TEKSLRVIADH 285
Query: 443 ARTLTIALADGGRPDNTGRG 462
R+ +ADG P N GRG
Sbjct: 286 IRSCAFLIADGVMPSNEGRG 305
Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 69/102 (67%), Gaps = 5/102 (4%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA Q+C+
Sbjct: 15 FFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGM-----DKRNYTRATTAQRCV 69
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
RAGGKHNDLD+VG HHTFFEMLGN+SFGDYFK + I G
Sbjct: 70 RAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFG 111
Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 92/191 (48%), Gaps = 49/191 (25%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D RA Q+C+RAGGKHNDLD+VG HHTFFEMLGN+SFG
Sbjct: 46 QFKDVFLGM-----DKRNYTRATTAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFG 100
Query: 158 DYFKKQH-----DYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
DYFK++ ++ + +P + + Y+ T D ++ V
Sbjct: 101 DYFKEEAIRFGWTFLTETLKLPKERLCVTI-------YQ-----TDDEAFEIWNKKIGVA 148
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH 272
+ IR G D+ G DNFW+MG+TGPCGPCSE+
Sbjct: 149 AENIIRIG------DNKG------------------AAYASDNFWQMGDTGPCGPCSEIF 184
Query: 273 Y---DRIGGGR 280
Y D I GGR
Sbjct: 185 YDHGDHIWGGR 195
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 72/156 (46%), Gaps = 42/156 (26%)
Query: 465 PLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLAD 524
PLPK +D GMG ER+ +I+Q SNY+ D+F T +G D + + RV+AD
Sbjct: 227 PLPKPSVDTGMGIERIAAIMQGVHSNYEIDIFRTLIAKAAEIIGVSDL--TEKSLRVIAD 284
Query: 525 HARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRG 584
H R+ +ADG P N G RG
Sbjct: 285 HIRSCAFLIADGVMPSNEG---------------------------------------RG 305
Query: 585 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
YVLRRI+RRAVR+G KLGA F LV +++ ++
Sbjct: 306 YVLRRIIRRAVRHGN-KLGATEAFFYKLVPSLIAVM 340
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLGA F LV +++ ++GD L + + + EEEQ
Sbjct: 306 YVLRRIIRRAVRHGN-KLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAEEEQ 364
Query: 830 FLKTLSRGRSLLN 842
F +TL RG +L+
Sbjct: 365 FARTLERGLGILD 377
Score = 41.6 bits (96), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 665 PDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 724
+TA Y + V + N + V ++ +G EA ++LD + FYAE GGQ+ D+G ++
Sbjct: 452 AETAFSGYTELAGQAKVTAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQLV 511
Query: 725 GVNDELEV 732
E V
Sbjct: 512 ANGVEFTV 519
>sp|A5EW88|SYA_DICNV Alanine--tRNA ligase OS=Dichelobacter nodosus (strain VCS1703A)
GN=alaS PE=3 SV=1
Length = 873
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/352 (36%), Positives = 191/352 (54%), Gaps = 47/352 (13%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F +YF + H VHS+ ++P +DPTLLF NAGM +K +F+GT + RA +
Sbjct: 12 AFLNYFSENGHKIVHSASLVPGNDPTLLFTNAGMVPFKELFIGT-----ETRDYRRATSA 66
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
Q+C+RAGGKHNDL++VG HHTFFE+L G+ + E P
Sbjct: 67 QRCVRAGGKHNDLENVGYTARHHTFFEML-------GNFSFGDYFKAEAIPFAWRFLTEV 119
Query: 274 DRIGGGRNAADLVNQDDPAY-----KADLLPSKLTRLENQ----RSMKDNFWEMGETGPC 324
++ + + ++DD AY K L ++ R+ ++ + DNFW MG+TGPC
Sbjct: 120 LQLPAEKLLVTVYHEDDEAYRIWQEKIGLPADRIIRIGDKAGKAKYESDNFWAMGDTGPC 179
Query: 325 GPCSELHYD---RIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDC 381
GPC+E+ YD I GGR + ++D +EIWN+VF+Q+ R+ +G++KPLPK ID
Sbjct: 180 GPCTEIFYDHGAEIFGGRPGS--ADEDGDRFIEIWNIVFMQFERDAEGTMKPLPKPSIDT 237
Query: 382 GMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLAD 441
GMG ER+ +V+Q SNYD D+F+ L +A K G EG + +V+AD
Sbjct: 238 GMGLERIAAVMQGVHSNYDIDLFIHLIDAAAKAVGCK----------NEG-QASLKVIAD 286
Query: 442 HARTLTIALADGGRPDNTGRG--LKPLPKKHI-------DCGMGFERLVSII 484
H R + DG P N GRG L+ + ++ I G+ F +LV+ +
Sbjct: 287 HIRATVFLMVDGVLPSNEGRGYVLRRIMRRAIRHGYKLGQQGLFFHKLVAAL 338
Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 69/99 (69%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
+ + H VHS+ ++P +DPTLLF NAGM +K +F+GT + RA + Q+C+
Sbjct: 16 YFSENGHKIVHSASLVPGNDPTLLFTNAGMVPFKELFIGT-----ETRDYRRATSAQRCV 70
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
RAGGKHNDL++VG HHTFFEMLGN+SFGDYFK + I
Sbjct: 71 RAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKAEAI 109
Score = 106 bits (265), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 93/190 (48%), Gaps = 48/190 (25%)
Query: 99 YKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 158
+K +F+GT + RA + Q+C+RAGGKHNDL++VG HHTFFEMLGN+SFGD
Sbjct: 48 FKELFIGT-----ETRDYRRATSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGD 102
Query: 159 YFKKQH-----DYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
YFK + ++ +P++ + + Y+ I+ + +D
Sbjct: 103 YFKAEAIPFAWRFLTEVLQLPAEKLLVTVYHEDDEAYR-IWQEKIGLPAD---------- 151
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
+ IR G D GK Y DNFW MG+TGPCGPC+E+ Y
Sbjct: 152 -RIIRIG------DKAGKAKYE-----------------SDNFWAMGDTGPCGPCTEIFY 187
Query: 274 D---RIGGGR 280
D I GGR
Sbjct: 188 DHGAEIFGGR 197
Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 123/325 (37%), Gaps = 105/325 (32%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
+KPLPK ID GMG ER+ +++Q SNYD D+F
Sbjct: 227 MKPLPKPSIDTGMGLERIAAVMQGVHSNYDIDLF-------------------------- 260
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
I L D + VG ++ EG + +V+ADH R + DG P N G
Sbjct: 261 --------IHLIDAA-----AKAVGCKN-EG-QASLKVIADHIRATVFLMVDGVLPSNEG 305
Query: 583 RGYVLR----RILRRAVRYG-------------------------------TEKLGAKPR 607
RGYVLR R +R + G TE + +
Sbjct: 306 RGYVLRRIMRRAIRHGYKLGQQGLFFHKLVAALVAEMGEAYPEIIAEQARITETIRKEEL 365
Query: 608 LFSSLVNTVVDLLL--LSQGKGATIE--------DTIGLDIHSITDL-QTRGVP------ 650
F+ + + +L L+ KG I DT G + D+ + RG+
Sbjct: 366 RFAQTLTAGMQILEQDLATLKGTIISGETVFKLYDTYGFPVDLTNDIARERGLTLDEAGY 425
Query: 651 ---------PTDDSPKYRYTPT---QPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGT 698
S +R T TA AY+ E E T+ + +Q D++ G
Sbjct: 426 EALMQAQRERAKASGTFRADKTYTVSGKTAFLAYQQEQTESTIEAIFVQEQAADTLDCGD 485
Query: 699 EAGILLDKSNFYAEQGGQIYDEGFM 723
EA ++L++S FY E GGQI D G +
Sbjct: 486 EAVLVLNQSPFYGESGGQIGDSGVI 510
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRA+R+G KLG + F LV +V +G+ +PE+ + I + I +EE +
Sbjct: 308 YVLRRIMRRAIRHGY-KLGQQGLFFHKLVAALVAEMGEAYPEIIAEQARITETIRKEELR 366
Query: 830 FLKTLSRGRSLLNRNESHL 848
F +TL+ G +L ++ + L
Sbjct: 367 FAQTLTAGMQILEQDLATL 385
>sp|A6WR16|SYA_SHEB8 Alanine--tRNA ligase OS=Shewanella baltica (strain OS185) GN=alaS
PE=3 SV=1
Length = 874
Score = 216 bits (550), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 169/320 (52%), Gaps = 37/320 (11%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F ++F+ H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA
Sbjct: 11 AFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGM-----DKRNYTRATTA 65
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
Q+C+RAGGKHNDLD+VG HHTFFE+L S D F E E G
Sbjct: 66 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNF-----SFGDYFKE--EAIRFGWTFLTET 118
Query: 274 DRIGGGRNAADLVNQDDPAY-----KADLLPSKLTRLENQRSM---KDNFWEMGETGPCG 325
++ R + DD A+ K + + R+ + + DNFW+MG+TGPCG
Sbjct: 119 LKLPKERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCG 178
Query: 326 PCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCG 382
PC+E+ YD I GGR + +D +EIWN+VF+QYNR+ G + PLPK +D G
Sbjct: 179 PCTEIFYDHGDHIWGGRPGSP--EEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTG 236
Query: 383 MGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADH 442
MG ER+ +++Q SNY+ D+F L + G + + RV+ADH
Sbjct: 237 MGIERIAAIMQGVHSNYEIDIFRTLIAKAAEIIGVSDL-----------TEKSLRVIADH 285
Query: 443 ARTLTIALADGGRPDNTGRG 462
R+ +ADG P N GRG
Sbjct: 286 IRSCAFLIADGVMPSNEGRG 305
Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 69/102 (67%), Gaps = 5/102 (4%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA Q+C+
Sbjct: 15 FFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGM-----DKRNYTRATTAQRCV 69
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
RAGGKHNDLD+VG HHTFFEMLGN+SFGDYFK + I G
Sbjct: 70 RAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFG 111
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 90/191 (47%), Gaps = 49/191 (25%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D RA Q+C+RAGGKHNDLD+VG HHTFFEMLGN+SFG
Sbjct: 46 QFKDVFLGM-----DKRNYTRATTAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFG 100
Query: 158 DYFKKQH-----DYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
DYFK++ ++ + +P + + T D ++ V
Sbjct: 101 DYFKEEAIRFGWTFLTETLKLPKERLCVTIYQ------------TDDEAFEIWNKKIGVA 148
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH 272
+ IR G D+ G DNFW+MG+TGPCGPC+E+
Sbjct: 149 AENIIRIG------DNKG------------------AAYASDNFWQMGDTGPCGPCTEIF 184
Query: 273 Y---DRIGGGR 280
Y D I GGR
Sbjct: 185 YDHGDHIWGGR 195
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 72/156 (46%), Gaps = 42/156 (26%)
Query: 465 PLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLAD 524
PLPK +D GMG ER+ +I+Q SNY+ D+F T +G D + + RV+AD
Sbjct: 227 PLPKPSVDTGMGIERIAAIMQGVHSNYEIDIFRTLIAKAAEIIGVSDL--TEKSLRVIAD 284
Query: 525 HARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRG 584
H R+ +ADG P N G RG
Sbjct: 285 HIRSCAFLIADGVMPSNEG---------------------------------------RG 305
Query: 585 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
YVLRRI+RRAVR+G KLGA F LV +++ ++
Sbjct: 306 YVLRRIIRRAVRHGN-KLGATEAFFYKLVPSLIAVM 340
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLGA F LV +++ ++GD L + + + EEEQ
Sbjct: 306 YVLRRIIRRAVRHGN-KLGATEAFFYKLVPSLIAVMGDAAKGLAETQVIVEKALKAEEEQ 364
Query: 830 FLKTLSRGRSLLN 842
F +TL RG +L+
Sbjct: 365 FARTLERGLGILD 377
Score = 41.2 bits (95), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 665 PDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 724
+TA Y + V + N + V ++ +G EA ++LD + FYAE GGQ+ D+G ++
Sbjct: 452 AETAFTGYTELAGQAKVTAIYLNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQLV 511
Query: 725 GVNDELEV 732
E V
Sbjct: 512 ANGIEFTV 519
>sp|A6W1F1|SYA_MARMS Alanine--tRNA ligase OS=Marinomonas sp. (strain MWYL1) GN=alaS PE=3
SV=1
Length = 872
Score = 216 bits (549), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 170/318 (53%), Gaps = 33/318 (10%)
Query: 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
SF YF+ KQH V SS ++P +DPTLLF NAGM Q+K +FLG D+ RA +
Sbjct: 9 SFLSYFESKQHQIVESSSLVPGNDPTLLFTNAGMVQFKDVFLG-----EDIRPYSRATTS 63
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSE 270
Q+C+RAGGKHNDL++VG HHTFFE+L KD WE P +
Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHYAWEFLTVVLKLPTEK 123
Query: 271 LHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRL---ENQRSMKDNFWEMGETGPCGPC 327
L A D+ N+D L K+ R+ + R DNFW MG+TGPCGPC
Sbjct: 124 LLVTVYADDDEAFDIWNKD-----IGLPVEKIIRIGDNKGGRYQSDNFWAMGDTGPCGPC 178
Query: 328 SELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMG 384
+E+ YD I GG + +D +EIWN+VF+Q+NR DG++ LPK +D GMG
Sbjct: 179 TEVFYDHGEHIWGGPPGSP--EEDGDRFIEIWNVVFMQFNRSADGTMASLPKPSVDTGMG 236
Query: 385 FERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHAR 444
ER+ +++Q SNY+ D+F L +A + G + + RV+ADH R
Sbjct: 237 LERIAAILQGVHSNYEIDLFQNLIKAAAQVVGTQDLSAQ-----------SLRVIADHIR 285
Query: 445 TLTIALADGGRPDNTGRG 462
+ + + DG P N GRG
Sbjct: 286 SCSFMIVDGVIPSNEGRG 303
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 70/99 (70%), Gaps = 5/99 (5%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
+ + KQH V SS ++P +DPTLLF NAGM Q+K +FLG D+ RA +Q+C+
Sbjct: 13 YFESKQHQIVESSSLVPGNDPTLLFTNAGMVQFKDVFLG-----EDIRPYSRATTSQRCV 67
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
RAGGKHNDL++VG HHTFFEMLGN+SFGDYFK I
Sbjct: 68 RAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAI 106
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
+ LPK +D GMG ER+ +I+Q SNY+ D+F VG +D + RV+
Sbjct: 223 MASLPKPSVDTGMGLERIAAILQGVHSNYEIDLFQNLIKAAAQVVGTQDLSA--QSLRVI 280
Query: 523 ADHARTLTIALADGGRPDNTGRG 545
ADH R+ + + DG P N GRG
Sbjct: 281 ADHIRSCSFMIVDGVIPSNEGRG 303
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRA+R+G KLG K F LV + +G+ +PELTK + + I+ +EEEQ
Sbjct: 304 YVLRRIIRRAIRHGN-KLGQKGVFFHKLVEALDVEMGEAYPELTKLKERVAAILLKEEEQ 362
Query: 830 FLKTLSRGRSLLNRNESHL 848
F KTL +G +L S L
Sbjct: 363 FAKTLDQGMKILEEAISGL 381
>sp|A1RHG5|SYA_SHESW Alanine--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=alaS
PE=3 SV=2
Length = 874
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 169/321 (52%), Gaps = 39/321 (12%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F ++F+ H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA
Sbjct: 11 AFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGM-----DKRNYTRATTA 65
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
Q+C+RAGGKHNDLD+VG HHTFFE+L S D F E C S L
Sbjct: 66 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNF-----SFGDYF---KEEAICFGWSFLTE 117
Query: 274 D-RIGGGRNAADLVNQDDPAY-----KADLLPSKLTRLENQRSM---KDNFWEMGETGPC 324
++ R + DD A+ K + + R+ + + DNFW+MG+TGPC
Sbjct: 118 TLKLPKERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPC 177
Query: 325 GPCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDC 381
GPC+E+ YD I GGR + +D +EIWN+VF+QYNR G + PLPK +D
Sbjct: 178 GPCTEIFYDHGDHIWGGRPGSP--EEDGDRFIEIWNIVFMQYNRHISGEMLPLPKPSVDT 235
Query: 382 GMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLAD 441
GMG ER+ +++Q SNY+ D+F L + G + + RV+AD
Sbjct: 236 GMGIERIAAIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNK-----------SLRVIAD 284
Query: 442 HARTLTIALADGGRPDNTGRG 462
H R+ +ADG P N GRG
Sbjct: 285 HIRSCAFLVADGVMPSNEGRG 305
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 69/102 (67%), Gaps = 5/102 (4%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA Q+C+
Sbjct: 15 FFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGM-----DKRNYTRATTAQRCV 69
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
RAGGKHNDLD+VG HHTFFEMLGN+SFGDYFK + I G
Sbjct: 70 RAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAICFG 111
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 92/191 (48%), Gaps = 49/191 (25%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D RA Q+C+RAGGKHNDLD+VG HHTFFEMLGN+SFG
Sbjct: 46 QFKDVFLGM-----DKRNYTRATTAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFG 100
Query: 158 DYFKKQH-----DYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
DYFK++ ++ + +P + + T D ++ V
Sbjct: 101 DYFKEEAICFGWSFLTETLKLPKERLCVTIYQ------------TDDEAFEIWNKKIGVA 148
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH 272
+ IR G D+ G P + DNFW+MG+TGPCGPC+E+
Sbjct: 149 AENIIRIG------DNKGA-----------PYA-------SDNFWQMGDTGPCGPCTEIF 184
Query: 273 Y---DRIGGGR 280
Y D I GGR
Sbjct: 185 YDHGDHIWGGR 195
Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 42/158 (26%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
+ PLPK +D GMG ER+ +I+Q SNY+ D+F R L
Sbjct: 225 MLPLPKPSVDTGMGIERIAAIMQGVHSNYEIDIF-----------------------RAL 261
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
A + G D + + + RV+ADH R+ +ADG P N G
Sbjct: 262 IAKAAEII------GVTDLSNK------------SLRVIADHIRSCAFLVADGVMPSNEG 303
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRI+RRAVR+G KLGA F LV T++D++
Sbjct: 304 RGYVLRRIIRRAVRHGN-KLGATEAFFYKLVPTLIDVM 340
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLGA F LV T++D++GD L + + + EEEQ
Sbjct: 306 YVLRRIIRRAVRHGN-KLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAEEEQ 364
Query: 830 FLKTLSRGRSLLNRNESHL 848
F +TL RG +L+ S L
Sbjct: 365 FARTLERGLGILDAALSEL 383
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 665 PDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 724
+TA Y + V + N + V ++ +G EA ++LD + FYAE GGQ+ D+G ++
Sbjct: 452 AETAFCGYTELVGQAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQLV 511
Query: 725 GVNDELEV 732
E V
Sbjct: 512 ANGIEFTV 519
>sp|A4Y931|SYA_SHEPC Alanine--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=alaS PE=3 SV=2
Length = 874
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 169/321 (52%), Gaps = 39/321 (12%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F ++F+ H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA
Sbjct: 11 AFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGM-----DKRNYTRATTA 65
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
Q+C+RAGGKHNDLD+VG HHTFFE+L S D F E C S L
Sbjct: 66 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNF-----SFGDYF---KEEAICFGWSFLTE 117
Query: 274 D-RIGGGRNAADLVNQDDPAY-----KADLLPSKLTRLENQRSM---KDNFWEMGETGPC 324
++ R + DD A+ K + + R+ + + DNFW+MG+TGPC
Sbjct: 118 TLKLPKERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPC 177
Query: 325 GPCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDC 381
GPC+E+ YD I GGR + +D +EIWN+VF+QYNR G + PLPK +D
Sbjct: 178 GPCTEIFYDHGDHIWGGRPGSP--EEDGDRFIEIWNIVFMQYNRHISGEMLPLPKPSVDT 235
Query: 382 GMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLAD 441
GMG ER+ +++Q SNY+ D+F L + G + + RV+AD
Sbjct: 236 GMGIERIAAIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNK-----------SLRVIAD 284
Query: 442 HARTLTIALADGGRPDNTGRG 462
H R+ +ADG P N GRG
Sbjct: 285 HIRSCAFLVADGVMPSNEGRG 305
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 69/102 (67%), Gaps = 5/102 (4%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
F + H V SS ++P +DPTLLF NAGMNQ+K +FLG D RA Q+C+
Sbjct: 15 FFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGM-----DKRNYTRATTAQRCV 69
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
RAGGKHNDLD+VG HHTFFEMLGN+SFGDYFK + I G
Sbjct: 70 RAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAICFG 111
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 92/191 (48%), Gaps = 49/191 (25%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLG D RA Q+C+RAGGKHNDLD+VG HHTFFEMLGN+SFG
Sbjct: 46 QFKDVFLGM-----DKRNYTRATTAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFG 100
Query: 158 DYFKKQH-----DYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
DYFK++ ++ + +P + + T D ++ V
Sbjct: 101 DYFKEEAICFGWSFLTETLKLPKERLCVTIYQ------------TDDEAFEIWNKKIGVA 148
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH 272
+ IR G D+ G P + DNFW+MG+TGPCGPC+E+
Sbjct: 149 AENIIRIG------DNKGA-----------PYA-------SDNFWQMGDTGPCGPCTEIF 184
Query: 273 Y---DRIGGGR 280
Y D I GGR
Sbjct: 185 YDHGDHIWGGR 195
Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 42/158 (26%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
+ PLPK +D GMG ER+ +I+Q SNY+ D+F R L
Sbjct: 225 MLPLPKPSVDTGMGIERIAAIMQGVHSNYEIDIF-----------------------RAL 261
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
A + G D + + + RV+ADH R+ +ADG P N G
Sbjct: 262 IAKAAEII------GVTDLSNK------------SLRVIADHIRSCAFLVADGVMPSNEG 303
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
RGYVLRRI+RRAVR+G KLGA F LV T++D++
Sbjct: 304 RGYVLRRIIRRAVRHGN-KLGATEAFFYKLVPTLIDVM 340
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G KLGA F LV T++D++GD L + + + EEEQ
Sbjct: 306 YVLRRIIRRAVRHGN-KLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAEEEQ 364
Query: 830 FLKTLSRGRSLLNRNESHL 848
F +TL RG +L+ S L
Sbjct: 365 FARTLERGLGILDAALSEL 383
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 665 PDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 724
+TA Y + V + N + V ++ +G EA ++LD + FYAE GGQ+ D+G ++
Sbjct: 452 AETAFCGYTELVGQAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQLV 511
Query: 725 GVNDELEV 732
E V
Sbjct: 512 ANGIEFTV 519
>sp|Q07R87|SYA_RHOP5 Alanine--tRNA ligase OS=Rhodopseudomonas palustris (strain BisA53)
GN=alaS PE=3 SV=2
Length = 891
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/317 (42%), Positives = 181/317 (57%), Gaps = 36/317 (11%)
Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F +YF K H+ V SS ++P +DPTL+F NAGM Q+K +F G V+ ++ RAV++
Sbjct: 10 AFLNYFGKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTG-VEKRAN----PRAVSS 64
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
QKC+RAGGKHNDLD+VG HHTFFE+L + KD+ E+ L
Sbjct: 65 QKCVRAGGKHNDLDNVGYTARHHTFFEMLG-NFSFGDYFKDHAIELAWNLITKEYG-LAK 122
Query: 274 DRIGGGRNAADLVNQDDPAYK-----ADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCS 328
DR+ + ++DD A+ A L SK+ R+ DNFW+MG+TGPCGPCS
Sbjct: 123 DRL-----LVTVFSEDDEAFGLWKKIAGLPDSKIIRIPTS----DNFWQMGDTGPCGPCS 173
Query: 329 EL---HYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGF 385
E+ H D I GG + +D +EIWNLVF+Q+++ GS PLPK ID GMG
Sbjct: 174 EIFFDHGDHIFGGPPGSP--EEDGDRFIEIWNLVFMQFDQVAPGSRNPLPKPSIDTGMGL 231
Query: 386 ERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHART 445
ER+ +V+Q K NY+ D+F L AI TGA P GE+ + RV+ADH R
Sbjct: 232 ERIAAVLQGKHDNYEIDLFQALIRAIADLTGADPQ----GEQKA-----SLRVIADHLRA 282
Query: 446 LTIALADGGRPDNTGRG 462
+ +ADG P N GRG
Sbjct: 283 SSFLIADGVLPSNEGRG 299
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 5/102 (4%)
Query: 4 FMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCI 63
+ K H+ V SS ++P +DPTL+F NAGM Q+K +F G V+ ++ RAV++QKC+
Sbjct: 14 YFGKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTG-VEKRAN----PRAVSSQKCV 68
Query: 64 RAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLG 105
RAGGKHNDLD+VG HHTFFEMLGN+SFGDYFK I L
Sbjct: 69 RAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELA 110
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 81/160 (50%), Gaps = 44/160 (27%)
Query: 118 RAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKQHDYVHSSCVIPSDD 177
RAV++QKC+RAGGKHNDLD+VG HHTFFEMLGN+SFGDYFK D
Sbjct: 60 RAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFK--------------DH 105
Query: 178 PTLLFANAGMNQY---KPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 234
L N +Y K L TV D A K I AG
Sbjct: 106 AIELAWNLITKEYGLAKDRLLVTVFSEDD-----EAFGLWKKI-AG-------------- 145
Query: 235 HHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYD 274
LP+S II DNFW+MG+TGPCGPCSE+ +D
Sbjct: 146 -------LPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFD 178
Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 130/333 (39%), Gaps = 114/333 (34%)
Query: 465 PLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLAD 524
PLPK ID GMG ER+ +++Q K NY+ D+F
Sbjct: 219 PLPKPSIDTGMGLERIAAVLQGKHDNYEIDLF---------------------------- 250
Query: 525 HARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRG 584
+ L A+AD D G E K + RV+ADH R + +ADG P N GRG
Sbjct: 251 --QALIRAIADLTGADPQG-----EQKASL----RVIADHLRASSFLIADGVLPSNEGRG 299
Query: 585 YVLRRILRRAVRYGTEKLGAKP----RLFSSLV--------------NTVVDLLLLSQGK 626
YVLRRI+RRA+R+G + LGA+ RL +LV N + + L L + +
Sbjct: 300 YVLRRIMRRAMRHG-QLLGAREPLMWRLVWALVREMGQAYPELVRAENLIEETLRLEETR 358
Query: 627 -----------------------------GATIEDTIGLDIHSITD-LQTRGVPP----- 651
T+ DT G + D L+ RG+
Sbjct: 359 FRKTLERGLGILDEKSNTLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARGISVDIASF 418
Query: 652 TDDSPKYRYTPTQPDTADG---------------------AYEFEPCEGTVVGLRYNKQF 690
TD + R T G YE E E V L + Q
Sbjct: 419 TDAMDRQRALARASWTGSGDTAAETVWFGLREKLGATEFLGYETETAEAEVAALVKDGQV 478
Query: 691 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 723
VD + +G I+L+++ FYAE GGQ+ D G +
Sbjct: 479 VDQLKTGDSGAIVLNQTPFYAESGGQVGDTGVL 511
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRA+R+G + LGA+ L LV +V +G +PEL + I + + EE +
Sbjct: 300 YVLRRIMRRAMRHG-QLLGAREPLMWRLVWALVREMGQAYPELVRAENLIEETLRLEETR 358
Query: 830 FLKTLSRGRSLLNRNESHLAQ 850
F KTL RG +L+ + L Q
Sbjct: 359 FRKTLERGLGILDEKSNTLKQ 379
>sp|Q129G8|SYA_POLSJ Alanine--tRNA ligase OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=alaS PE=3 SV=1
Length = 878
Score = 213 bits (543), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 178/323 (55%), Gaps = 43/323 (13%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
SF D+F K H V SS ++P +DPTL+F N+GM Q+K +FLGT D VRA +
Sbjct: 18 SFLDFFASKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGT-----DKRSYVRAASV 72
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSE 270
Q C+RAGGKHNDL++VG HHTFFE+L +++ WE+ +
Sbjct: 73 QACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWEL-----LTDVYK 127
Query: 271 LHYDRIGGGRNAADLVNQDDPAY-----KADLLPSKLTRLENQRSMK---DNFWEMGETG 322
L D++ A + DD AY + L P ++ R+ + + K DNFW M +TG
Sbjct: 128 LPADKLW-----ATVYIDDDEAYDIWTKEIGLPPERVVRIGDNKGAKYASDNFWMMADTG 182
Query: 323 PCGPCSELHYD---RIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHI 379
PCGPCSE+ YD I GG + QD +EIWN VF+Q++ + DGS+KPLP +
Sbjct: 183 PCGPCSEIFYDHGPEIAGGPPGSP--EQDGDRYIEIWNNVFMQFDMQPDGSVKPLPAPCV 240
Query: 380 DCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVL 439
D GMG ERL +++Q SNY+ DVF L +A + TG +K+ + + RV+
Sbjct: 241 DTGMGLERLAAILQHVHSNYEIDVFDALIKAAARETG-----------EKDLNNKSLRVI 289
Query: 440 ADHARTLTIALADGGRPDNTGRG 462
ADH R ++DG P N GRG
Sbjct: 290 ADHIRATAFLVSDGVNPSNEGRG 312
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 6/102 (5%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF K H V SS ++P +DPTL+F N+GM Q+K +FLGT D VRA + Q
Sbjct: 20 LDFFASKG-HTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGT-----DKRSYVRAASVQ 73
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
C+RAGGKHNDL++VG HHTFFEMLGNWSFGDYFK + +
Sbjct: 74 ACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESL 115
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 93/190 (48%), Gaps = 49/190 (25%)
Query: 98 KYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 157
++K +FLGT D VRA + Q C+RAGGKHNDL++VG HHTFFEMLGNWSFG
Sbjct: 53 QFKDVFLGT-----DKRSYVRAASVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFG 107
Query: 158 DYFKKQH-----DYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVN 212
DYFK++ + + +P+D L+A ++ D D+ +
Sbjct: 108 DYFKRESLKWAWELLTDVYKLPADK---LWATVYIDD---------DEAYDIWTKEIGLP 155
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELH 272
++ +R G D+ G DNFW M +TGPCGPCSE+
Sbjct: 156 PERVVRIG------DNKGAKY------------------ASDNFWMMADTGPCGPCSEIF 191
Query: 273 YD---RIGGG 279
YD I GG
Sbjct: 192 YDHGPEIAGG 201
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 129/311 (41%), Gaps = 62/311 (19%)
Query: 455 RPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEG 514
+PD + +KPLP +D GMG ERL +I+Q SNY+ DVF GE+D
Sbjct: 227 QPDGS---VKPLPAPCVDTGMGLERLAAILQHVHSNYEIDVFDALIKAAARETGEKDLN- 282
Query: 515 IDMAYRVLADHARTLTIALADGGRPDNTGRGV------------GEEDKEGIDMAYRVLA 562
+ + RV+ADH R ++DG P N GRG G + + ++++A
Sbjct: 283 -NKSLRVIADHIRATAFLVSDGVNPSNEGRGYVQRRIIRRAIRHGYKLGKKTPFFHKLVA 341
Query: 563 DHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLV--NTVVDLL 620
D AR + A R D VL+ + R F +L T++D
Sbjct: 342 DLARLMGDAYPK-LRTDEARITAVLK--------------AEEERFFETLEIGMTILDTA 386
Query: 621 LLSQGK------GATIEDTIGLDIHSITDL-QTRGVPPTDDSPKYRYTPTQPDTADGAYE 673
L K + DT G + D+ + RGV D++ Q + A A +
Sbjct: 387 LAGGAKVLPGDVAFKLHDTYGFPLDLSADVCRERGV-DVDETGFNAAMDRQKNQARAAGK 445
Query: 674 F------------------EPCEGT--VVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQ 713
F E E T +V L + V +++ G ++LD + FYAE
Sbjct: 446 FKMDRALEYAGSGNTFTGYERLEETAKIVALYADGVPVAALTKGQSGVVVLDTTPFYAES 505
Query: 714 GGQIYDEGFMI 724
GGQ+ DEG +I
Sbjct: 506 GGQVGDEGELI 516
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 786 KLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLN 842
KLG K F LV + L+GD +P+L D I ++ EEE+F +TL G ++L+
Sbjct: 328 KLGKKTPFFHKLVADLARLMGDAYPKLRTDEARITAVLKAEEERFFETLEIGMTILD 384
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYF 756
E WAWELLT VYK+PAD+L+ T +
Sbjct: 113 ESLKWAWELLTDVYKLPADKLWATVY 138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 366,306,268
Number of Sequences: 539616
Number of extensions: 17833247
Number of successful extensions: 48559
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 37179
Number of HSP's gapped (non-prelim): 6373
length of query: 854
length of database: 191,569,459
effective HSP length: 126
effective length of query: 728
effective length of database: 123,577,843
effective search space: 89964669704
effective search space used: 89964669704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)